HHsearch alignment for GI: 254781078 and conserved domain: pfam01617
>pfam01617 Surface_Ag_2 Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.
Probab=92.75 E-value=0.6 Score=23.78 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=69.2
Q ss_pred CEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCC--------------------------CCCCCEEEEEEEEEEEEEE
Q ss_conf 50479988655445779999988674047776432--------------------------3101003679899986331
Q gi|254781078|r 87 NGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYR--------------------------LKEKYFIYGDVVLKAGYSV 140 (242)
Q Consensus 87 ~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~--------------------------~~~k~~~~Gsvr~r~Gya~ 140 (242)
T Consensus 101 ~gfsGaiGYs--~~~~RiE~E~sye~Fdvk~~~~~~~~da~~y~al~r~~~~~~~~~~y~v~kN~gis~~S~m~N~CYD~ 178 (279)
T pfam01617 101 TGFGGAIGYS--MDGPRVELEVSYERFDVKNQGNNYKNDAHKYAALTRDAAIAAADSKYVVLKNDGLTDISLMLNACYDI 178 (279)
T ss_pred CEEEEEEEEC--CCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEEEEEC
T ss_conf 2068999681--49988999987658335899876146615899986002666667746999967788665799999962
Q ss_pred --C--CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEE-CCCCEEE
Q ss_conf --4--403444401145753011000236666555543455653037987316673278768888988874-4873000
Q gi|254781078|r 141 --D--SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIP-HHIHSVN 214 (242)
Q Consensus 141 --~--~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d-~g~~~~~ 214 (242)
T Consensus 179 ~~~~~~i~PY~C~GiG~d~i~---------------~~~~~~~K~aYq~KlGvsY~ls~~i~lF~~gyYHkV~gn~-F~ 241 (279)
T pfam01617 179 AHEGIPVSPYVCAGVGADLIS---------------VFGAINPKFSYQGKAGLSYPITPEISLFAGGHYHKVIGNE-FD 241 (279)
T ss_pred CCCCCCCCCEEEEECCHHHHH---------------HCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCC-CC
T ss_conf 238862044787743774632---------------3267533589999523788738885999988998731775-57