HHsearch alignment for GI: 254781078 and conserved domain: pfam02462
>pfam02462 Opacity Opacity family porin protein. Pathogenic Neisseria spp. possess a repertoire of phase-variable Opacity proteins that mediate various pathogen--host cell interactions. These proteins are integral membrane proteins related to other porins.
Probab=99.37 E-value=8e-12 Score=83.31 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=83.7
Q ss_pred EEEEEECCEEEEEEEEEEEE-CCCCCCCCCCCCCEEEEEEEEEEEEEE---CCEEEEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 86554457799999886740-477764323101003679899986331---44034444011457530110002366665
Q gi|254781078|r 94 GHNIQLEDFVFGINCHTTAA-KDDSTFYRLKEKYFIYGDVVLKAGYSV---DSLLIYGMGGFGGAYVIDSSLEKVESDNS 169 (242)
Q Consensus 94 GYN~Q~~~~V~GvE~d~~~~-~~~~~~~~~~~k~~~~Gsvr~r~Gya~---~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~ 169 (242)
T Consensus 2 GY--dfg~~R~--A~DY~~y~k~~~~~~~~--~~~---SlglsaiYDFdt~s~~kPYvGarv~~~~~~~~~~~~~----- 67 (126)
T pfam02462 2 GY--RFGNLRF--AVDYTRYGKVKANSTDF--KGY---SLGASVIYDFDTQSPVKPYVGARVSTNGFKVTASAEL----- 67 (126)
T ss_pred CC--CCCCEEE--EECHHHHCCCCCCCCCE--EEE---EEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCC-----
T ss_conf 61--3587999--82012315213787535--767---6367899971589952142675676122210355535-----
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 5554345565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 170 KNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 170 ~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
T Consensus 68 -~~~~s~S~~~~g~gv~AGVgyditpnltLD~GYRY~~~G~l-----------e--~tr~~theas~GvRY~F 126 (126)
T pfam02462 68 -GGSDSFSDTRIGLGVLAGVSYKLTPNVDLDTGYRYNRLGKV-----------T--VTNVRSGEASAGVRYKF 126 (126)
T ss_pred -CCCCCCCCCEEEEEEEEEEEEECCCCEEEECCEEEEECCCC-----------C--CCEECCCCEEEEEEEEC
T ss_conf -87556503359998874368832787377125288004641-----------3--43020121368866639