HHsearch alignment for GI: 254781078 and conserved domain: pfam02462

>pfam02462 Opacity Opacity family porin protein. Pathogenic Neisseria spp. possess a repertoire of phase-variable Opacity proteins that mediate various pathogen--host cell interactions. These proteins are integral membrane proteins related to other porins.
Probab=99.37  E-value=8e-12  Score=83.31  Aligned_cols=121  Identities=15%  Similarity=0.168  Sum_probs=83.7

Q ss_pred             EEEEEECCEEEEEEEEEEEE-CCCCCCCCCCCCCEEEEEEEEEEEEEE---CCEEEEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             86554457799999886740-477764323101003679899986331---44034444011457530110002366665
Q gi|254781078|r   94 GHNIQLEDFVFGINCHTTAA-KDDSTFYRLKEKYFIYGDVVLKAGYSV---DSLLIYGMGGFGGAYVIDSSLEKVESDNS  169 (242)
Q Consensus        94 GYN~Q~~~~V~GvE~d~~~~-~~~~~~~~~~~k~~~~Gsvr~r~Gya~---~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~  169 (242)
T Consensus         2 GY--dfg~~R~--A~DY~~y~k~~~~~~~~--~~~---SlglsaiYDFdt~s~~kPYvGarv~~~~~~~~~~~~~-----   67 (126)
T pfam02462         2 GY--RFGNLRF--AVDYTRYGKVKANSTDF--KGY---SLGASVIYDFDTQSPVKPYVGARVSTNGFKVTASAEL-----   67 (126)
T ss_pred             CC--CCCCEEE--EECHHHHCCCCCCCCCE--EEE---EEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCC-----
T ss_conf             61--3587999--82012315213787535--767---6367899971589952142675676122210355535-----


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             5554345565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  170 KNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       170 ~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
T Consensus        68 -~~~~s~S~~~~g~gv~AGVgyditpnltLD~GYRY~~~G~l-----------e--~tr~~theas~GvRY~F  126 (126)
T pfam02462        68 -GGSDSFSDTRIGLGVLAGVSYKLTPNVDLDTGYRYNRLGKV-----------T--VTNVRSGEASAGVRYKF  126 (126)
T ss_pred             -CCCCCCCCCEEEEEEEEEEEEECCCCEEEECCEEEEECCCC-----------C--CCEECCCCEEEEEEEEC
T ss_conf             -87556503359998874368832787377125288004641-----------3--43020121368866639