HHsearch alignment for GI: 254781078 and conserved domain: pfam05736
>pfam05736 OprF OprF membrane domain. This domain represents the presumed membrane spanning region of the OprF proteins. This region is involved in channel formation and is thought to form an 8-stranded beta-barrel.
Probab=98.10 E-value=7.4e-05 Score=45.18 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=73.5
Q ss_pred CCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCC-CCCEEEE-EEEEEEEEEE----CCEEEEEEEEEEEEEEECC
Q ss_conf 55047998865544577999998867404777643231-0100367-9899986331----4403444401145753011
Q gi|254781078|r 86 PNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLK-EKYFIYG-DVVLKAGYSV----DSLLIYGMGGFGGAYVIDS 159 (242)
Q Consensus 86 ~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~-~k~~~~G-svr~r~Gya~----~~~l~Y~~gG~A~~~~~~~ 159 (242)
T Consensus 50 g~~~G~~iGY~lTdd-----vsl~l~y~~~~~~r~~~~~g~~~i~g~~~rLDalYHF~~pg~~lrPYvs~G~gh~s~~~~ 124 (184)
T pfam05736 50 GDLPGGSIGYFLTDD-----VELNLSYDETHDTRSTDGTGNQKVGGDLTSLDAQYHFGTPGDGLRPYVSAGFAHQSITNV 124 (184)
T ss_pred CCCCEEEEEEECCCC-----EEEEEEECCCCCHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEECC
T ss_conf 896403652571788-----389988734210001357666103563466777997389876633727731465200022
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 00023666655554345565303798731667327876888898887448730003666666442201234138999886
Q gi|254781078|r 160 SLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGIN 239 (242)
Q Consensus 160 ~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~Gin 239 (242)
T Consensus 125 ~---------~g~~Grd~sT--~~N~G~G~Ky~itdn~~aRa~vra~y----------------~lD~~~~d~~a~vGl~ 177 (184)
T pfam05736 125 A---------DGSQGRDQST--FANIGAGAKYYFTENFYARAGVEAQY----------------GLDNGDWEWAALVGLG 177 (184)
T ss_pred C---------CCCCCCCCCE--EEEECCCEEEEECCCEEEEECHHHHC----------------CCCCCCCCEEEEEEEE
T ss_conf 5---------6877656441--67634526899605447761325310----------------4778861200455249
Q ss_pred EEC
Q ss_conf 209
Q gi|254781078|r 240 MHF 242 (242)
Q Consensus 240 Y~F 242 (242)
T Consensus 178 ~~F 180 (184)
T pfam05736 178 VNF 180 (184)
T ss_pred EEC
T ss_conf 960