HHsearch alignment for GI: 254781078 and conserved domain: pfam06316
>pfam06316 Ail_Lom Enterobacterial Ail/Lom protein. This family consists of several bacterial and phage Ail/Lom-like proteins. The Yersinia enterocolitica Ail protein is a known virulence factor. Proteins in this family are predicted to consist of eight transmembrane beta-sheets and four cell surface-exposed loops. It is thought that Ail directly promotes invasion and loop 2 contains an active site, perhaps a receptor-binding domain. The phage protein Lom is expressed during lysogeny, and encode host-cell envelope proteins. Lom is found in the bacterial outer membrane, and is homologous to virulence proteins of two other enterobacterial genera. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.
Probab=99.01 E-value=4.7e-08 Score=62.68 Aligned_cols=133 Identities=13% Similarity=0.176 Sum_probs=88.2
Q ss_pred EEEEEEEEEECCEEEEEEEEEEEECCCCCCCCC---------CCCCEEEEEEEEEEEEEECC-EEEEEEEEEEEEEEECC
Q ss_conf 799886554457799999886740477764323---------10100367989998633144-03444401145753011
Q gi|254781078|r 90 GIELGHNIQLEDFVFGINCHTTAAKDDSTFYRL---------KEKYFIYGDVVLKAGYSVDS-LLIYGMGGFGGAYVIDS 159 (242)
Q Consensus 90 G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~---------~~k~~~~Gsvr~r~Gya~~~-~l~Y~~gG~A~~~~~~~ 159 (242)
T Consensus 50 G~NlKYRYE~d~~-lGvIgSfTy~~~~~~~~~~~~~~~~~~~~~~~~-YySlmaGPsyR~Nd~vS~Ygl~G~a~~k~~~~ 127 (199)
T pfam06316 50 GINVKYRYEFTDT-LGLITSFSYANAEDEQKTHYNDTRWHEDSVRNR-WFSVMAGPSVRVNEWFSAYALAGVAYARVSSF 127 (199)
T ss_pred CEEEEEEEECCCC-EEEEEEEEEECCCCCCCEECCCCCCCCCCCCCE-EEEEEECCCEEECCEEEEEEECCEEEEEEEEC
T ss_conf 5388866441798-078999999615653120205762025642203-89997346268511012012123136776402
Q ss_pred CCCCCC--C-----CCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEE
Q ss_conf 000236--6-----665555434556530379873166732787688889888744873000366666644220123413
Q gi|254781078|r 160 SLEKVE--S-----DNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAH 232 (242)
Q Consensus 160 ~~~~~~--~-----~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h 232 (242)
T Consensus 128 ~~d~~~~~~~~~~~~~~~~~s~~~s~s~tsfAyGAGvQfNP~~nvaiD~gYEgS~~------------------~d~~~~ 189 (199)
T pfam06316 128 AGDYFRLTDDEGKKHDHLTGSDDARRSHTALAWGAGVQFNPTENIAVDLAYEASGR------------------GDWRTD 189 (199)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCC------------------CCCEEC
T ss_conf 46503312555654555444444544433224420279715766799987763034------------------870517
Q ss_pred EEEEEEEEEC
Q ss_conf 8999886209
Q gi|254781078|r 233 IASLGINMHF 242 (242)
Q Consensus 233 ~v~~GinY~F 242 (242)
T Consensus 190 gf~vGVGYRF 199 (199)
T pfam06316 190 AFIVGTGYKF 199 (199)
T ss_pred CEEEEEEECC
T ss_conf 5899514409