HHsearch alignment for GI: 254781078 and conserved domain: pfam06629
>pfam06629 MipA MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.
Probab=97.49 E-value=0.0056 Score=34.91 Aligned_cols=136 Identities=18% Similarity=0.102 Sum_probs=77.6
Q ss_pred EEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEC-CEEEEEEEEEEEEEEECCCCCCCCC--
Q ss_conf 7998865544577999998867404777643231010036798999863314-4034444011457530110002366--
Q gi|254781078|r 90 GIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVD-SLLIYGMGGFGGAYVIDSSLEKVES-- 166 (242)
Q Consensus 90 G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~r~Gya~~-~~l~Y~~gG~A~~~~~~~~~~~~~~-- 166 (242)
T Consensus 86 ~~G~~~~~~~~~~~~~~~~~~dv~~~~---------~G~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~y~~yyyGV~~~ 156 (226)
T pfam06629 86 VGGLKAAYDTGWGTVRAELEQDISNGS---------RGFVADIGLAATYDLGDRLSLSPSLGLSYASRKYNDYYFGVSAA 156 (226)
T ss_pred EEEEEEEEECCCEEEEEEEEEECCCCC---------CCEEEEEEEEEEEECCCCEEEEEEEEEEECCHHHHHHHHCCCHH
T ss_conf 217899999488899999999324673---------88999999999996399779999789998677675655377978
Q ss_pred CCCCC--CCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 66555--54345565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 167 DNSKN--AKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 167 ~~~~~--~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
T Consensus 157 ea~~s~~~~Y~a~~g~~~~~~~~~~~y~l~~~w~~~~~~~~~~L~~~~~dSP-----i--v~~~-~~~~~~~g~~Y~F 226 (226)
T pfam06629 157 ESARSGLAQYNAGAGLWSAGLGLSATYMLTDHWSALGSASYTRLSGDAADSP-----I--VERR-GQPSAGLGVAYRF 226 (226)
T ss_pred HHHHCCCCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEECCCCHHCCC-----C--EEEC-CCEEEEEEEEEEC
T ss_conf 9612378640578770789999999999669999999999998488211499-----5--8867-8789999999989