HHsearch alignment of GI: 254781078 and MMDB domain: 1p4t_A_
>1p4t_A (A:) Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis}
Probab=99.91 E-value=3.2e-22 Score=139.85 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=113.3
Q ss_pred EEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEE
Q ss_conf 00574446441033222145556666676675504799886554457799999886740477764323101003679899
Q gi|254781078|r 55 SGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVL 134 (242)
Q Consensus 55 tG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~ 134 (242)
+|+|||+.+|+.+...+..+. ....+|+++|| |+++|.+.+|.+........... . ......+-+
T Consensus 4 ~~~yvg~~~G~~~~~~~~~~~---------~~~~~g~~~GY--~fn~~~~e~~~~~~~~~~~~~~~-~---~~~~~~l~~ 68 (155)
T 1p4t_A 4 SGFYVQADAAHAKASSSLGSA---------KGFSPRISAGY--RINDLRFAVDYTRYKNYKAPSTD-F---KLYSIGASA 68 (155)
T ss_dssp EEEEEEEEEEEEEEECSSCEE---------EEECCEEEEEE--EETTEEEEEEEEEEEESSCCSSC-C---EEEEEEEEE
T ss_pred CCEEEEEECEEEECCCCCCCC---------CCEEEEEEEEE--ECCCEEEEEEEEEECCCCCCCCE-E---EEEEEEEEE
T ss_conf 642897864176134766778---------85748999999--80799999999995354678702-5---788999999
Q ss_pred EEEEEE-CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEE
Q ss_conf 986331-4403444401145753011000236666555543455653037987316673278768888988874487300
Q gi|254781078|r 135 KAGYSV-DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSV 213 (242)
Q Consensus 135 r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~ 213 (242)
+..+.+ +++.||+++|+++.+++.+. ......+++..+|.+|+|+||+++|||++++||||+++++.
T Consensus 69 ~~~~~~~~~~~~Y~~~G~~~~~~~~~~----------~~~~~~~~~~~~~~~g~G~~y~i~~~~~~~~~y~y~~~~~~-- 136 (155)
T 1p4t_A 69 IYDFDTQSPVKPYLGARLSLNRASVDL----------GGSDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKV-- 136 (155)
T ss_dssp EEECCCSSSEEEEEEEEEEEEEEEEEE----------TTEEEECCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE--
T ss_pred EEEECCCCCEEEEEEEEEEEEEEEEEC----------CCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEECCCC--
T ss_conf 998436785669999889999998201----------55565566327314731799994589999999999976676--
Q ss_pred ECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 03666666442201234138999886209
Q gi|254781078|r 214 NNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
..+.+.+.|.+++||+|||
T Consensus 137 ----------~~~~~~~~~~~~lGv~Y~F 155 (155)
T 1p4t_A 137 ----------NTVKNVRSGELSAGVRVKF 155 (155)
T ss_dssp ----------TTEEEEEEEEEEEEEEEEC
T ss_pred ----------CCCCCEEEEEEEEEEEEEC
T ss_conf ----------6575200228999999999