HHsearch alignment of GI: 254781078 and MMDB domain: 1qjp_A_
>1qjp_A (A:) Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli}
Probab=99.88 E-value=6.1e-21 Score=132.85 Aligned_cols=165 Identities=17% Similarity=0.044 Sum_probs=112.7
Q ss_pred EEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCC---CCCCCCCEEE
Q ss_conf 0000574446441033222145556666676675504799886554457799999886740477764---3231010036
Q gi|254781078|r 53 IWSGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTF---YRLKEKYFIY 129 (242)
Q Consensus 53 ~WtG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~---~~~~~k~~~~ 129 (242)
.|+|+|||+++|+.+...+...+.. ......+..+|+.+|| |+.+. +++|+.+.+....... ...+.+...+
T Consensus 3 ~~~~~yvg~~~g~~~~~~~~~~~~~--~~~~~~~~~~g~~~Gy--~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (171)
T 1qjp_A 3 KDNTWYTGAKLGWSQYHDTGLINNN--GPTHENKLGAGAFGGY--QVNPY-VGFEMGYDWLGRMPYKGSVENGAYKAQGV 77 (171)
T ss_dssp CTTEEEEEEEEEEEC---------------CCCEEEEEEEEEE--EEETT-EEEEEEEEEEEECCC-------CEEEEEE
T ss_pred CCCCEEEEEEEEEEEECCCCCCCCC--CCCCCCCEEEEEEEEE--ECCCC-EEEEEEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf 6797999998622995165332677--6315897389999999--91587-89999999658532013454440487889
Q ss_pred EEEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECC
Q ss_conf 79899986331440344440114575301100023666655554345565303798731667327876888898887448
Q gi|254781078|r 130 GDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHH 209 (242)
Q Consensus 130 Gsvr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g 209 (242)
.....+.....++++||+++|+++.+.+... ......+.+..++.+|+|+||.|+++|++++||||+...
T Consensus 78 ~~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~----------~~~~~~~~~~~~~~~g~G~~y~l~~~~~i~~e~~~~~~~ 147 (171)
T 1qjp_A 78 QLTAKLGYPITDDLDIYTRLGGMVWRADTYS----------NVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNI 147 (171)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEEEEEEEEEC----------SSSCEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEC--
T ss_pred EEEEEEEECCCCCCEEEEEEEEEEEEEEEEE----------CCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEECC
T ss_conf 9999999814776147678636899621100----------246514467432588827999935997999999999725
Q ss_pred CCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 730003666666442201234138999886209
Q gi|254781078|r 210 IHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
.+.. ..+.+.+.|.+.+||+|||
T Consensus 148 ~~~~----------~~~~~~~~~~~~~G~~y~F 170 (171)
T 1qjp_A 148 GDAH----------TIGTRPDNGMLSLGVSYRF 170 (171)
T ss_dssp ----------------------CEEEEEEEEEC
T ss_pred CCCC----------CCCCCCCCCEEEEEEEEEC
T ss_conf 8765----------5441112458999999988