Query         gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 242
No_of_seqs    152 out of 223
Neff          5.0 
Searched_HMMs 33803
Date          Wed Jun  1 22:44:47 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781078.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1p4t_A Outer membrane protein  99.9 3.2E-22 9.5E-27  139.8  19.5  151   55-242     4-155 (155)
  2 >2f1v_A Outer membrane protein  99.9   7E-23 2.1E-27  143.5  15.3  185   53-242     2-191 (197)
  3 >1qjp_A Outer membrane protein  99.9 6.1E-21 1.8E-25  132.8  18.0  165   53-242     3-170 (171)
  4 >2k0l_A Outer membrane protein  99.8 4.6E-19 1.3E-23  122.6  18.4  173   52-242    14-192 (216)
  5 >1orm_A Outer membrane protein  99.8 1.4E-21 4.2E-26  136.3  -4.6  129   86-242    19-148 (148)
  6 >2jmm_A Outer membrane protein  99.8 5.4E-17 1.6E-21  111.3  16.0  146   54-242     4-150 (156)
  7 >1uyn_X NALP; autotransporter,  99.1 2.2E-08 6.6E-13   64.1  18.1  169   56-242   120-308 (308)
  8 >2f1c_X OMPG, outer membrane p  99.1 1.9E-08 5.5E-13   64.5  17.7   53  177-242   228-280 (286)
  9 >2qom_A Serine protease ESPP;   99.1 2.6E-08 7.8E-13   63.7  18.2  168   55-242    92-277 (285)
 10 >3kvn_X Esterase ESTA; beta ba  98.8   4E-06 1.2E-10   51.8  18.3  138   87-242   155-311 (311)
 11 >1i78_A Protease VII; integral  98.4 4.4E-05 1.3E-09   46.1  14.9  151   90-242   113-297 (297)
 12 >2vdf_A OPCA, outer membrane p  97.7  0.0025 7.3E-08   36.5  14.6   18  225-242   236-253 (253)
 13 >2j1n_A Outer membrane protein  97.5  0.0044 1.3E-07   35.1  19.8   52  182-242   295-346 (346)
 14 >2por_A Porin; HET: C8E; 1.80A  97.4  0.0056 1.6E-07   34.6  19.8   43  181-242   259-301 (301)
 15 >1uyn_X NALP; autotransporter,  97.4  0.0064 1.9E-07   34.2  16.4   79  129-208   154-237 (308)
 16 >3kvn_X Esterase ESTA; beta ba  97.2   0.011 3.1E-07   33.0  17.9  111  131-241   156-279 (311)
 17 >3prn_A Porin; integral membra  97.1   0.014   4E-07   32.4  16.6   38  184-242   252-289 (289)
 18 >1pho_A Phosphoporin; outer me  97.0   0.018 5.5E-07   31.7  19.9   49  182-242   282-330 (330)
 19 >2k0l_A Outer membrane protein  96.9  0.0086 2.6E-07   33.5   8.5  133   15-147     6-161 (216)
 20 >2qom_A Serine protease ESPP;   96.8   0.027   8E-07   30.8  18.3  112  129-241   125-244 (285)
 21 >1qjp_A Outer membrane protein  96.6   0.018 5.2E-07   31.8   8.7   10   90-99     78-87  (171)
 22 >2jmm_A Outer membrane protein  96.0   0.053 1.6E-06   29.2   8.2   92   55-146    22-123 (156)
 23 >2zfg_A Outer membrane protein  95.7     0.1   3E-06   27.7  20.0   49  182-242   292-340 (340)
 24 >2f1v_A Outer membrane protein  95.5   0.069   2E-06   28.6   7.2   30  123-152   127-157 (197)
 25 >2fgq_X OMP32, outer membrane   94.8    0.21 6.1E-06   26.0  19.2   62  181-242   270-332 (332)
 26 >3bry_A TBUX; beta barrel, out  94.5    0.25 7.4E-06   25.5  15.9   59  182-242   377-435 (441)
 27 >2o4v_A Porin P; outer membran  94.4    0.26 7.6E-06   25.5  16.7   54  178-242   358-411 (411)
 28 >2erv_A Hypothetical protein P  93.9    0.34   1E-05   24.8  17.5  126   90-240    20-150 (150)
 29 >3dwo_X Probable outer membran  93.7    0.36 1.1E-05   24.7   9.8   54  182-242   336-389 (451)
 30 >3dwn_A Long-chain fatty acid   93.4    0.41 1.2E-05   24.3  10.1   23  184-206   368-390 (427)
 31 >3bs0_A TODX; beta barrel, out  84.0     2.3 6.9E-05   20.2  16.1   60  181-242   374-433 (439)
 32 >2wjr_A Probable N-acetylneura  81.1     3.1 9.1E-05   19.6  18.7   55  177-242   160-214 (214)
 33 >2guf_A Vitamin B12 transporte  74.5     4.9 0.00014   18.5  17.1   50  183-242   412-461 (461)
 34 >2qtk_A Probable porin; outer   68.7     6.7  0.0002   17.7  18.5   18  225-242   371-388 (390)
 35 >3jty_A BENF-like porin; PFL_1  61.3     9.3 0.00028   16.9  16.7   27   90-116   212-238 (402)
 36 >2odj_A Porin D; outer membran  58.6      10 0.00031   16.6  17.5   49  180-242   365-417 (428)
 37 >3efm_A FAUA, ferric alcaligin  51.9      14  0.0004   16.0  13.5   22  183-204   496-517 (550)
 38 >2w16_A FPVA, ferripyoverdine   34.8      26 0.00077   14.5  15.5   56  182-242   609-664 (664)
 39 >3fid_A Putative outer membran  24.9      39  0.0012   13.5  12.7  129   93-242   131-263 (296)
 40 >2hdi_A Colicin I receptor; ou  22.0      45  0.0013   13.2  15.6   10  233-242   495-504 (504)

No 1  
>>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} (A:)
Probab=99.91  E-value=3.2e-22  Score=139.85  Aligned_cols=151  Identities=15%  Similarity=0.146  Sum_probs=113.3

Q ss_pred             EEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEE
Q ss_conf             00574446441033222145556666676675504799886554457799999886740477764323101003679899
Q gi|254781078|r   55 SGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVL  134 (242)
Q Consensus        55 tG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~  134 (242)
                      +|+|||+.+|+.+...+..+.         ....+|+++||  |+++|.+.+|.+........... .   ......+-+
T Consensus         4 ~~~yvg~~~G~~~~~~~~~~~---------~~~~~g~~~GY--~fn~~~~e~~~~~~~~~~~~~~~-~---~~~~~~l~~   68 (155)
T 1p4t_A            4 SGFYVQADAAHAKASSSLGSA---------KGFSPRISAGY--RINDLRFAVDYTRYKNYKAPSTD-F---KLYSIGASA   68 (155)
T ss_dssp             EEEEEEEEEEEEEEECSSCEE---------EEECCEEEEEE--EETTEEEEEEEEEEEESSCCSSC-C---EEEEEEEEE
T ss_pred             CCEEEEEECEEEECCCCCCCC---------CCEEEEEEEEE--ECCCEEEEEEEEEECCCCCCCCE-E---EEEEEEEEE
T ss_conf             642897864176134766778---------85748999999--80799999999995354678702-5---788999999


Q ss_pred             EEEEEE-CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEE
Q ss_conf             986331-4403444401145753011000236666555543455653037987316673278768888988874487300
Q gi|254781078|r  135 KAGYSV-DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSV  213 (242)
Q Consensus       135 r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~  213 (242)
                      +..+.+ +++.||+++|+++.+++.+.          ......+++..+|.+|+|+||+++|||++++||||+++++.  
T Consensus        69 ~~~~~~~~~~~~Y~~~G~~~~~~~~~~----------~~~~~~~~~~~~~~~g~G~~y~i~~~~~~~~~y~y~~~~~~--  136 (155)
T 1p4t_A           69 IYDFDTQSPVKPYLGARLSLNRASVDL----------GGSDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKV--  136 (155)
T ss_dssp             EEECCCSSSEEEEEEEEEEEEEEEEEE----------TTEEEECCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE--
T ss_pred             EEEECCCCCEEEEEEEEEEEEEEEEEC----------CCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEECCCC--
T ss_conf             998436785669999889999998201----------55565566327314731799994589999999999976676--


Q ss_pred             ECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             03666666442201234138999886209
Q gi|254781078|r  214 NNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                                ..+.+.+.|.+++||+|||
T Consensus       137 ----------~~~~~~~~~~~~lGv~Y~F  155 (155)
T 1p4t_A          137 ----------NTVKNVRSGELSAGVRVKF  155 (155)
T ss_dssp             ----------TTEEEEEEEEEEEEEEEEC
T ss_pred             ----------CCCCCEEEEEEEEEEEEEC
T ss_conf             ----------6575200228999999999


No 2  
>>2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A (A:)
Probab=99.91  E-value=7e-23  Score=143.47  Aligned_cols=185  Identities=9%  Similarity=0.007  Sum_probs=121.8

Q ss_pred             EEEEEEEEEEEEEEEEEEECCCCCCCCCC-CCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCC-CC---CCCCCCCCE
Q ss_conf             00005744464410332221455566666-76675504799886554457799999886740477-76---432310100
Q gi|254781078|r   53 IWSGNYVGLHISRLYETHPLADTINRKTY-NSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDD-ST---FYRLKEKYF  127 (242)
Q Consensus        53 ~WtG~YiG~~~G~~~~~~~~~d~~~~~~~-n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~-~~---~~~~~~k~~  127 (242)
                      .|+|+|||+++|+.+...+.......... ....+..+++++||+++ .+|-+.+|..+...... ..   ...-.....
T Consensus         2 ~~~g~Yig~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gy~~~-~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (197)
T 2f1v_A            2 EAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMAT-DNIGVELLAATPFRHKIGTRATGDIATVHHLP   80 (197)
T ss_dssp             CTTCEEEEEEEEEEECCCC---------CCEECCEEEEEEEEEEESS-SSEEEEEEEESCEEEEEEETTTEEEEEEEEEC
T ss_pred             CCCCEEEEECEEEECCCCCCCCCCCCCCCEEECCCEEEEEEEEEEEE-CCCEEEEEEEEEEEEEECCCCCCCCCCEEEEC
T ss_conf             77788999466998864678864367663486787488689999950-67215667656100010124777522045504


Q ss_pred             EEEEEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEE
Q ss_conf             36798999863314403444401145753011000236666555543455653037987316673278768888988874
Q gi|254781078|r  128 IYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIP  207 (242)
Q Consensus       128 ~~Gsvr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d  207 (242)
                      ....++-+.....+++.||+.+|+++++++.........  ........++++++|.+|+|++|.|+++|++++||||++
T Consensus        81 ~~~~~~y~~~~~~~~~~py~~~G~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~G~~y~l~~~~~l~~eyry~~  158 (197)
T 2f1v_A           81 PTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGK--EAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMD  158 (197)
T ss_dssp             CEEEEEEECSCTTCSEEEEEEEEEEEEEEEEEEECHHHH--HTTEEEEEECCEEEEEEEEEEEEECSSSEEEEEEEEEEC
T ss_pred             CEEEEEEEECCCCCCEEEEEEECCEEEEEEECCCCCCCC--CCCCCCCCCCCCEEEEEECCEEEECCCCEEEEEEEEEEE
T ss_conf             248899986177775889997321778996000156776--542212445663838997348999079839999999997


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             48730003666666442201234138999886209
Q gi|254781078|r  208 HHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       208 ~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +.++.......  .....+.+.+.|.+++||+|||
T Consensus       159 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~~Y~F  191 (197)
T 2f1v_A          159 IDTTANYKLGG--AQQHDSVRLDPWVFMFSAGYRF  191 (197)
T ss_dssp             CEEEEEEEESS--CCCCEEEECCCEEEEEEEEEEE
T ss_pred             CCCCEEEECCC--CCCCEEEEECCEEEEEEEEEEE
T ss_conf             45515784288--6311048727138999999996


No 3  
>>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} (A:)
Probab=99.88  E-value=6.1e-21  Score=132.85  Aligned_cols=165  Identities=17%  Similarity=0.044  Sum_probs=112.7

Q ss_pred             EEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCC---CCCCCCCEEE
Q ss_conf             0000574446441033222145556666676675504799886554457799999886740477764---3231010036
Q gi|254781078|r   53 IWSGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTF---YRLKEKYFIY  129 (242)
Q Consensus        53 ~WtG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~---~~~~~k~~~~  129 (242)
                      .|+|+|||+++|+.+...+...+..  ......+..+|+.+||  |+.+. +++|+.+.+.......   ...+.+...+
T Consensus         3 ~~~~~yvg~~~g~~~~~~~~~~~~~--~~~~~~~~~~g~~~Gy--~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~   77 (171)
T 1qjp_A            3 KDNTWYTGAKLGWSQYHDTGLINNN--GPTHENKLGAGAFGGY--QVNPY-VGFEMGYDWLGRMPYKGSVENGAYKAQGV   77 (171)
T ss_dssp             CTTEEEEEEEEEEEC---------------CCCEEEEEEEEEE--EEETT-EEEEEEEEEEEECCC-------CEEEEEE
T ss_pred             CCCCEEEEEEEEEEEECCCCCCCCC--CCCCCCCEEEEEEEEE--ECCCC-EEEEEEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf             6797999998622995165332677--6315897389999999--91587-89999999658532013454440487889


Q ss_pred             EEEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECC
Q ss_conf             79899986331440344440114575301100023666655554345565303798731667327876888898887448
Q gi|254781078|r  130 GDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHH  209 (242)
Q Consensus       130 Gsvr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g  209 (242)
                      .....+.....++++||+++|+++.+.+...          ......+.+..++.+|+|+||.|+++|++++||||+...
T Consensus        78 ~~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~----------~~~~~~~~~~~~~~~g~G~~y~l~~~~~i~~e~~~~~~~  147 (171)
T 1qjp_A           78 QLTAKLGYPITDDLDIYTRLGGMVWRADTYS----------NVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNI  147 (171)
T ss_dssp             EEEEEEEEESSSSEEEEEEEEEEEEEEEEEC----------SSSCEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEC--
T ss_pred             EEEEEEEECCCCCCEEEEEEEEEEEEEEEEE----------CCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEECC
T ss_conf             9999999814776147678636899621100----------246514467432588827999935997999999999725


Q ss_pred             CCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             730003666666442201234138999886209
Q gi|254781078|r  210 IHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .+..          ..+.+.+.|.+.+||+|||
T Consensus       148 ~~~~----------~~~~~~~~~~~~~G~~y~F  170 (171)
T 1qjp_A          148 GDAH----------TIGTRPDNGMLSLGVSYRF  170 (171)
T ss_dssp             ----------------------CEEEEEEEEEC
T ss_pred             CCCC----------CCCCCCCCCEEEEEEEEEC
T ss_conf             8765----------5441112458999999988


No 4  
>>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae} (A:)
Probab=99.84  E-value=4.6e-19  Score=122.60  Aligned_cols=173  Identities=16%  Similarity=0.068  Sum_probs=116.0

Q ss_pred             CEEEEEEEEEEEEEEEEEEECCCCCCCC---CCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCC-CCCCCCE
Q ss_conf             3000057444644103322214555666---66766755047998865544577999998867404777643-2310100
Q gi|254781078|r   52 GIWSGNYVGLHISRLYETHPLADTINRK---TYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFY-RLKEKYF  127 (242)
Q Consensus        52 ~~WtG~YiG~~~G~~~~~~~~~d~~~~~---~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~-~~~~k~~  127 (242)
                      -.|+++|||+.+|+.+............   +.......++|+.+||  |+.+. +++|+++++...+.... ....+.+
T Consensus        14 ~~~~~~yig~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gY--~~~~~-~~ve~~~~~~~~~~~~~~~~~~~~~   90 (216)
T 2k0l_A           14 PKDNTWYAGGKLGWSQYHDTGFYGNGFQNNNGPTRNDQLGAGAFGGY--QVNPY-LGFEMGYDWLGRMAYKGSVDNGAFK   90 (216)
T ss_dssp             SCCCCEEEEEEEECSCCCCSCCCCCSCCCSCCCSCCCCCEEEEEEEE--EEETT-EEEEEEEEECCCCCCCCSSCCCSSC
T ss_pred             CCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEE--EECCC-CCEEEEEEECCCCCCCCCCCCCCEE
T ss_conf             87798999999821886066432566545664103786689999997--85144-4348614650420122224576268


Q ss_pred             E-EEEEEEEEEEEE-CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf             3-679899986331-44034444011457530110002366665555434556530379873166732787688889888
Q gi|254781078|r  128 I-YGDVVLKAGYSV-DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRY  205 (242)
Q Consensus       128 ~-~Gsvr~r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y  205 (242)
                      . .-.+.++..+.. +++.||+.+|+++.+.+.......     .......+.+.+++.+|+|+||.|+++|++++||||
T Consensus        91 ~~~~~~~~~y~~~~~~~~~~y~~~G~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~G~~y~l~~~~~l~~~~~y  165 (216)
T 2k0l_A           91 AQGVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYAS-----TGVSRSEHDTGVSPVFAGGVEWAVTRDIATRLEYQW  165 (216)
T ss_dssp             CCEEEEEEEEEEESSSSEEEEEEEEEEEEECCCCCSCCC-----SSSCCCCCCEEEEEEEEEEEEEECSSSCEEEEEESS
T ss_pred             EEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCEEECCC-----CCCCCCCCCCCCCCEECCEEEEEECCCEEEEEEEEE
T ss_conf             887889999998620241177774478986011120145-----763211345630313512379983699799999999


Q ss_pred             EECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             7448730003666666442201234138999886209
Q gi|254781078|r  206 IPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       206 ~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      ++..+...          ..+.+.+.+.+++||+|||
T Consensus       166 ~~~~~~~~----------~~~~~~~~~~~~~Gl~Y~F  192 (216)
T 2k0l_A          166 VNNIGDAG----------TVGTRPDNGMLSLGVSYRF  192 (216)
T ss_dssp             CSSCCCCS----------CCCCSSCSCCCEEEEEEEC
T ss_pred             EECCCCCC----------CCCCCCCCCEEEEEEEEEC
T ss_conf             95368655----------5553233678999999999


No 5  
>>1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents, lipids, micelles; NMR {Escherichia coli} (A:)
Probab=99.78  E-value=1.4e-21  Score=136.34  Aligned_cols=129  Identities=17%  Similarity=0.161  Sum_probs=103.8

Q ss_pred             CCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEE-CCEEEEEEEEEEEEEEECCCCCCC
Q ss_conf             5504799886554457799999886740477764323101003679899986331-440344440114575301100023
Q gi|254781078|r   86 PNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSV-DSLLIYGMGGFGGAYVIDSSLEKV  164 (242)
Q Consensus        86 ~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~  164 (242)
                      ....|+++||+||+.++++++|+.+++.+.............+..++.++..|.+ +++.||+++|+++.+.+.+.    
T Consensus        19 ~~~~g~~~gy~~~f~~~~~~~E~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Y~~~G~~~~~~~~~~----   94 (148)
T 1orm_A           19 NKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTE----   94 (148)
T ss_dssp             CCCCCCCCCBCCCSSSCSCCCCBCCCCCCCCCCSSSCCSCCSCCCBCCBCCCCCCTTTCCCCCCEECBCCSCSCCS----
T ss_pred             CCCCEEEEEECEECCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECC----
T ss_conf             8410699996989588169999999954466730346222212899998888960786469999867789844213----


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             666655554345565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  165 ESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       165 ~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                            ......+.+.+++.+|+|+||.|+|||++++||||++.+                  +.+.+.+++||+|||
T Consensus        95 ------~~~~~~~~~~~~~~~g~G~~y~l~~~~~~~~ey~~~~~~------------------d~~~~~~~~Gv~y~F  148 (148)
T 1orm_A           95 ------YPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIR------------------SVDVGTWIAGVGYRF  148 (148)
T ss_dssp             ------SSSCCCCCCCCCCEECCCCCCCCSSSCBCCCCCCCCCSS------------------SCCCCCCCCCCBCCC
T ss_pred             ------CCCCCCCCCEEEEEEECCEEEECCCCEEEEEEEEEEECC------------------CCEEEEEEEEEEEEC
T ss_conf             ------776445654043888431799727887999999997469------------------951206999999989


No 6  
>>2jmm_A Outer membrane protein A; NMR {Escherichia coli} (A:)
Probab=99.76  E-value=5.4e-17  Score=111.26  Aligned_cols=146  Identities=17%  Similarity=0.053  Sum_probs=103.9

Q ss_pred             EEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf             00057444644103322214555666667667550479988655445779999988674047776432310100367989
Q gi|254781078|r   54 WSGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVV  133 (242)
Q Consensus        54 WtG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr  133 (242)
                      .+++|||+++|+.+...+             ...++|+.+||  ++.+. +++|+.+.+...........     ...+.
T Consensus         4 ~~~~yig~~~g~~~~~~~-------------~~~~~g~~~gy--~~~~~-~~~e~~~~~~~~~~~~~~~~-----~~~~~   62 (156)
T 2jmm_A            4 DNTWYTGAKLGWSQYSRE-------------NQLGAGAFGGY--QVNPY-VGFEMGYDWLGRMPRKAQGV-----QLTAK   62 (156)
T ss_dssp             SSEEEEEEEEEEETTCCS-------------SCCEEEEEEEE--ECSSS-EEEEEEEEEECSSSSCEEEE-----EEEEE
T ss_pred             CCCEEEEEECCCEEECCC-------------CCCEEEEEEEE--EECCC-EEEEEEEEECCCCCEEEECC-----EEEEE
T ss_conf             796879787121214378-------------98587899988--70787-89999788346664154232-----15467


Q ss_pred             EEEEEEE-CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCE
Q ss_conf             9986331-440344440114575301100023666655554345565303798731667327876888898887448730
Q gi|254781078|r  134 LKAGYSV-DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHS  212 (242)
Q Consensus       134 ~r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~  212 (242)
                      ++.-+.. +++.||+++|+++.+.+.+..       ........+.+.+++.+|+|++|.++++|++++||||+..    
T Consensus        63 ~~~~~~~~~~~~~y~~~G~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~G~~y~l~~~~~l~~e~~~~~~----  131 (156)
T 2jmm_A           63 LGYPKLGTDDLDIYTRLGGMVWRADTSDK-------DGNGYISAAEASVSPVFAGGVEYVIRRRITPEIATRLEYQ----  131 (156)
T ss_dssp             EEECTTCTTTCEEEEEEEEEEESSBCCCC-------CSSSCCCCCBCCCCEEEEEEEEEECSSSCSSSEEEEEEEE----
T ss_pred             EEEEECCCCCEEEEEEEEEEEEEEEEEEC-------CCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEE----
T ss_conf             89997036854298983146998344320-------3677433366762877998999986426473437999999----


Q ss_pred             EECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             003666666442201234138999886209
Q gi|254781078|r  213 VNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                                 ..+.+.+.+.+++||+|+|
T Consensus       132 -----------~~d~~~~~~~~~~Gl~Y~F  150 (156)
T 2jmm_A          132 -----------WTNNASDNGMLSLGVSYRF  150 (156)
T ss_dssp             -----------EESSSSCEEEEEEEEEEES
T ss_pred             -----------EECCCCCCCEEEEEEEEEC
T ss_conf             -----------8268887777999899998


No 7  
>>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} (X:)
Probab=99.12  E-value=2.2e-08  Score=64.11  Aligned_cols=169  Identities=14%  Similarity=0.125  Sum_probs=102.3

Q ss_pred             EEEEEEEEEEEEEEEECCCCCCCC--CCCCC--CCCEEEEEEEEEEEEC-CEEEEEEEEEEEECC--CC-----CCCCCC
Q ss_conf             057444644103322214555666--66766--7550479988655445-779999988674047--77-----643231
Q gi|254781078|r   56 GNYVGLHISRLYETHPLADTINRK--TYNSL--LPNGLGIELGHNIQLE-DFVFGINCHTTAAKD--DS-----TFYRLK  123 (242)
Q Consensus        56 G~YiG~~~G~~~~~~~~~d~~~~~--~~n~~--~~~g~G~~~GYN~Q~~-~~V~GvE~d~~~~~~--~~-----~~~~~~  123 (242)
                      ++|+.+.+++++.+.+........  .....  ....+.+.+||+++++ +|.+-..+.+.+...  +.     ....++
T Consensus       120 ~~~~~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~l~P~~~l~~~~~~~~~~~e~g~~~~~~  199 (308)
T 1uyn_X          120 IGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWS  199 (308)
T ss_dssp             TEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCE
T ss_pred             CEEEEEEEEEEEEECCEEEEECCCCCCEEEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECCCEEEE
T ss_conf             71379998899980304553113553112662017999999989998269659999987577786245507507741688


Q ss_pred             CCCEEEEEEEEEEEEE----EC-CEEEEEEEEEEEEEEECCCCC--CCC-CCCCCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf             0100367989998633----14-403444401145753011000--236-666555543455653037987316673278
Q gi|254781078|r  124 EKYFIYGDVVLKAGYS----VD-SLLIYGMGGFGGAYVIDSSLE--KVE-SDNSKNAKGRFDGHGSSVVLGIGLDYMVNY  195 (242)
Q Consensus       124 ~k~~~~Gsvr~r~Gya----~~-~~l~Y~~gG~A~~~~~~~~~~--~~~-~~~~~~~~~~~d~t~~G~tvGaGVEYait~  195 (242)
                      .+......+++++|..    ++ ..-|++..++-..-.......  ... ...........+..+....+++|+|+.+++
T Consensus       200 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~  279 (308)
T 1uyn_X          200 GNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGN  279 (308)
T ss_dssp             ECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEEEEET
T ss_pred             ECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEEEECC
T ss_conf             62565026668768999752155167989989999706898416999962787515774357887469999969999879


Q ss_pred             CEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             76888898887448730003666666442201234138999886209
Q gi|254781078|r  196 DISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       196 nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +|++.++|.+.                  ...+.+.|.+.+||+|+|
T Consensus       280 ~~~~~~~~~~~------------------~~~~~~~~~~~~gl~~~F  308 (308)
T 1uyn_X          280 GWNGLARYSYA------------------GSKQYGNHSGRVGVGYRF  308 (308)
T ss_dssp             TEEEEEEEEEE------------------EETTEEEEEEEEEEEEEC
T ss_pred             CEEEEEEEEEE------------------ECCCCCEEEEEEEEEEEC
T ss_conf             98999999999------------------777851189999999989


No 8  
>>2f1c_X OMPG, outer membrane protein G; beta barrel; HET: C8E; 2.30A {Escherichia coli K12} PDB: 2jqy_A 2iwv_A* 2iww_A* (X:)
Probab=99.12  E-value=1.9e-08  Score=64.52  Aligned_cols=53  Identities=19%  Similarity=0.243  Sum_probs=42.6

Q ss_pred             CCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  177 DGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       177 d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      ..++..|++++|+||.++++|++|+||+|-+-..             +.....+.|..++|++|+|
T Consensus       228 ~~~~d~~~~~~G~ey~~~~~~~lr~gy~y~~~~~-------------~~~~~~~~~~~~lG~~y~f  280 (286)
T 2f1c_X          228 REGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDH-------------DEGDSDKFHYAGVGVNYSF  280 (286)
T ss_dssp             ----CCEEEEEEEEEECSSSEEEEEEEEEEECC-------------------CCEEEEEEEEEEEE
T ss_pred             ECCCCCEEEEEEEEEEECCCEEEEEEEEEEECCC-------------CCCCCCEEEEEEEEEEEEE
T ss_conf             4057724999999634079669999999997255-------------4788857894788678998


No 9  
>>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157} (A:)
Probab=99.12  E-value=2.6e-08  Score=63.71  Aligned_cols=168  Identities=13%  Similarity=0.117  Sum_probs=103.1

Q ss_pred             EEEEEEEEEEEEEEEEECCCCCCCCCCCCCC--CCEEEEEEEEEEEEC-CEEEEEEEEEEEECCCC-------CCCCCCC
Q ss_conf             0057444644103322214555666667667--550479988655445-77999998867404777-------6432310
Q gi|254781078|r   55 SGNYVGLHISRLYETHPLADTINRKTYNSLL--PNGLGIELGHNIQLE-DFVFGINCHTTAAKDDS-------TFYRLKE  124 (242)
Q Consensus        55 tG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~--~~g~G~~~GYN~Q~~-~~V~GvE~d~~~~~~~~-------~~~~~~~  124 (242)
                      .++|+-+.+++++.+.+...........+..  ..++.+.+||.+.++ .|.+-..+.+.+.....       ....++.
T Consensus        92 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~l~P~~~l~y~~~~~~~~~e~~~~~~l~~  171 (285)
T 2qom_A           92 SGAYIDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQGMHLSM  171 (285)
T ss_dssp             TSEEEEEEEEEEEEEEEEEC---CCCCEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEEEEEEEEC--------CCC
T ss_pred             CCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCCCEE
T ss_conf             65030044677886330143026643222233218874672167980367178678999999996477323577433133


Q ss_pred             CCE----EEEEEEEEEEEEEC----CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf             100----36798999863314----4034444011457530110002366665555434556530379873166732787
Q gi|254781078|r  125 KYF----IYGDVVLKAGYSVD----SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYD  196 (242)
Q Consensus       125 k~~----~~Gsvr~r~Gya~~----~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~n  196 (242)
                      +..    +.+.+-.|+.+.+.    .+.||+..++.+...  ........ .........+..+..+.+++|+++.++++
T Consensus       172 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  248 (285)
T 2qom_A          172 KDKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLL--ANGETVLR-DASGEKRIKGEKDSRMLMSVGLNAEIRDN  248 (285)
T ss_dssp             EEEEEEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEE--ETCTTBCC-CSSSSCCSSSSEEEEEEEEEEEEEEETTT
T ss_pred             CCCCEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEECC--CCCEEEEE-CCCCCEEECCCCCCEEEEEEEEEEEECCC
T ss_conf             0464006888754353011306880799999999997217--88528971-34541350368886799999899998999


Q ss_pred             EEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             6888898887448730003666666442201234138999886209
Q gi|254781078|r  197 ISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       197 wslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      |++.++|.+.--                 +.+...+.+++||+|+|
T Consensus       249 ~~~~~~~~~~~~-----------------~~~~~~~~~~lgl~y~F  277 (285)
T 2qom_A          249 VRFGLEFEKSAF-----------------GKYNVDNAVNANFRYSF  277 (285)
T ss_dssp             EEECEEEEEEES-----------------SSSEEEEEEEECCEEEE
T ss_pred             EEEEEEEEEEEC-----------------CCCCEEEEEEEEEEEEE
T ss_conf             999999999975-----------------88844079999999998


No 10 
>>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell outer membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa} (X:322-632)
Probab=98.75  E-value=4e-06  Score=51.78  Aligned_cols=138  Identities=13%  Similarity=0.129  Sum_probs=83.7

Q ss_pred             CEEEEEEEEEEEE---CCEEEEEEEEEEEECC--CC------CCCCCCCCCEEEEEEEEEEEEEE----C-CEEEEEEEE
Q ss_conf             5047998865544---5779999988674047--77------64323101003679899986331----4-403444401
Q gi|254781078|r   87 NGLGIELGHNIQL---EDFVFGINCHTTAAKD--DS------TFYRLKEKYFIYGDVVLKAGYSV----D-SLLIYGMGG  150 (242)
Q Consensus        87 ~g~G~~~GYN~Q~---~~~V~GvE~d~~~~~~--~~------~~~~~~~k~~~~Gsvr~r~Gya~----~-~~l~Y~~gG  150 (242)
                      -++.+++||++.+   ++|.+--.+.+.+...  +.      ....++.......++.+++|..+    . .+.|++..+
T Consensus       155 ~~~~~~~g~~~~~~~~~~~~i~P~~~l~~~~~~~~~~~E~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  234 (311)
T 3kvn_X          155 WAFSARLGYDIAQQADSPWHLSPFVSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQLFAEYA  234 (311)
T ss_dssp             EEEEEEEEECSCSCTTCSEEEEEEEEEEEEEEEECCCBCSSCCTTCEEECCEEEEEEEEEEEEEEEEESSSSEEEEEEEE
T ss_pred             EEEEEEECEEEECCCCCCEEEEEEEEEEEEEEECCCEEECCCCCCCEEECCCCCCEEEEEEEEEEEEECCCCEEEEEEEE
T ss_conf             99999935675025668689999999999998537535417872006981664208999999999996188268999999


Q ss_pred             EEEEEEECCCCC---CCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCC
Q ss_conf             145753011000---23666655554345565303798731667327876888898887448730003666666442201
Q gi|254781078|r  151 FGGAYVIDSSLE---KVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDR  227 (242)
Q Consensus       151 ~A~~~~~~~~~~---~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~  227 (242)
                      +...-.......   ........-.....+..+.-..+++|+++.+.++|++.++|.+.-                  ..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~------------------~~  296 (311)
T 3kvn_X          235 HEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGGYNWRK------------------GE  296 (311)
T ss_dssp             EEEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEEEEEEEEEEETTEEEEEEEEEEE------------------ET
T ss_pred             EEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEEEECCCEEEEEEEEEEE------------------CC
T ss_conf             982205897317999973788537884455788689999999999889889999999998------------------88


Q ss_pred             CCCEEEEEEEEEEEC
Q ss_conf             234138999886209
Q gi|254781078|r  228 KGNAHIASLGINMHF  242 (242)
Q Consensus       228 ~~~~h~v~~GinY~F  242 (242)
                      +.+.|.+.+|++|+|
T Consensus       297 ~~~~~~~~~g~~~~F  311 (311)
T 3kvn_X          297 DDTQQSVSLALSLDF  311 (311)
T ss_dssp             TEEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEEEC
T ss_conf             968999999999989


No 11 
>>1i78_A Protease VII; integral outer membrane protein, beta barrel, hydrolase; HET: BOG; 2.60A {Escherichia coli K12} (A:)
Probab=98.36  E-value=4.4e-05  Score=46.06  Aligned_cols=151  Identities=11%  Similarity=0.091  Sum_probs=81.1

Q ss_pred             EEEEEEEEEEC-CEEEEEEEEEEEECC--------------C---C-------CCCCCCCCCEEEEE-EEEEEEEEECCE
Q ss_conf             79988655445-779999988674047--------------7---7-------64323101003679-899986331440
Q gi|254781078|r   90 GIELGHNIQLE-DFVFGINCHTTAAKD--------------D---S-------TFYRLKEKYFIYGD-VVLKAGYSVDSL  143 (242)
Q Consensus        90 G~~~GYN~Q~~-~~V~GvE~d~~~~~~--------------~---~-------~~~~~~~k~~~~Gs-vr~r~Gya~~~~  143 (242)
                      -+.+||++..+ +.-+|+-+-+++...              .   .       ..-.++.++.|.+- +-...-|.++++
T Consensus       113 dl~~g~~fl~~~~~klg~~~Gy~y~~~~~~a~Gg~~~y~~~~~~~~~~g~~p~~~~~i~Y~q~w~~p~iGl~g~y~~~~~  192 (297)
T 1i78_A          113 DLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDIGSFPNGERAIGYKQRFKMPYIGLTGSYRYEDF  192 (297)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEEEEEEEEEEECCEEEBCCTTCSSCBCCBCCTTCSEEEEEEEEEEEEEEEEEEEEETTE
T ss_pred             CCCCEEEEECCCCCHHHHHHCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEECCCCCEEEEEE
T ss_conf             52120466158852212220311011468734741686143232011156888421213243136733312242253300


Q ss_pred             EEEEEEEE-EEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCE-----EECCC
Q ss_conf             34444011-4575301100023666655554345565303798731667327876888898887448730-----00366
Q gi|254781078|r  144 LIYGMGGF-GGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHS-----VNNSN  217 (242)
Q Consensus       144 l~Y~~gG~-A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~-----~~~~~  217 (242)
                      -+.+..=+ .|.+.+....-..-.  ......+..+...++-+.+-+.|.+||+|++.+|-+|..+-...     ++...
T Consensus       193 ~l~~~~~ys~~v~~~~~D~H~lR~--~~~~~~~~~~~~~g~~l~~~~~Y~vt~~~si~v~g~y~~~~~~~g~t~~~~~~~  270 (297)
T 1i78_A          193 ELGGTFKYSGWVESSDNDEHYDPK--GRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNN  270 (297)
T ss_dssp             EEEEEEEEEEEEEEEEEEEEECSS--SCEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEETTT
T ss_pred             ECCCEEEEEEEEECCCCCCCCCCC--CCEEEEEECCCCCEEEEEECCCEEECCCCEEEEEEHHHHHCCCCCCCEEECCCC
T ss_conf             316357641135637774345887--626763011457437899606568768844998401232003678722031679


Q ss_pred             CCCCC--CCCCCCCCEEEEEEEEEEEC
Q ss_conf             66664--42201234138999886209
Q gi|254781078|r  218 AKSDV--ERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       218 ~~~~~--~~~~~~~~~h~v~~GinY~F  242 (242)
                      +....  ...-.+....++++||-|+|
T Consensus       271 g~~~~~~~~ag~~~~~~~~s~Gl~y~F  297 (297)
T 1i78_A          271 NTSDYSKNGAGIENYNFITTAGLKYTF  297 (297)
T ss_dssp             TEEEEEEEEEEEEEEEEEEEEEEEEEC
T ss_pred             CCCCCCCCCCCCCCCCEEEECCEEECC
T ss_conf             832013477763222416621312229


No 12 
>>2vdf_A OPCA, outer membrane protein; invasin, adhesin, beta barrel; 1.95A {Neisseria meningitidis} (A:)
Probab=97.69  E-value=0.0025  Score=36.50  Aligned_cols=18  Identities=17%  Similarity=0.191  Sum_probs=9.1

Q ss_pred             CCCCCCEEEEEEEEEEEC
Q ss_conf             201234138999886209
Q gi|254781078|r  225 VDRKGNAHIASLGINMHF  242 (242)
Q Consensus       225 ~~~~~~~h~v~~GinY~F  242 (242)
                      ++.+...|..=+.|.|+|
T Consensus       236 ~ep~n~~~~yGv~~~~~F  253 (253)
T 2vdf_A          236 TIPKTSIREYGLRVGIKF  253 (253)
T ss_dssp             CCCCEEEEEEEEEEEEEC
T ss_pred             ECCCCCCEEEEEEEEEEC
T ss_conf             658875225327888759


No 13 
>>2j1n_A Outer membrane protein C; beta-barrel, ION transport, non-specific porin, general porin, osmoporin, transmembrane transport; HET: D12; 2.0A {Escherichia coli} PDB: 2j4u_P 2zle_D 2ixx_A* 2ixw_A* 1osm_A* (A:)
Probab=97.52  E-value=0.0044  Score=35.12  Aligned_cols=52  Identities=17%  Similarity=0.263  Sum_probs=38.9

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             3798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      --.+..|++|.++++..+.+||.|++....+...         .....+...+.+||.|+|
T Consensus       295 ~~~~~~g~~Y~~sk~~~~y~~~~~~~~~~~~~~~---------~~~~~~~~~~~vGlr~~F  346 (346)
T 2j1n_A          295 LKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTR---------DAGINTDNIVALGLVYQF  346 (346)
T ss_dssp             EEEEEEEEEEESSSSEEEEEEEEEECCCCCHHHH---------HHTCCCSCEEEEEEEEEC
T ss_pred             EEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCC---------CCCCCCCCEEEEEEEEEC
T ss_conf             6999999999816998999999985356642233---------467766778999999989


No 14 
>>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} (A:)
Probab=97.44  E-value=0.0056  Score=34.55  Aligned_cols=43  Identities=19%  Similarity=0.313  Sum_probs=36.1

Q ss_pred             EEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             03798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  181 SSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       181 ~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .-..+..|++|.++++.++-+||.|.+.                   +.+...+.+||.|+|
T Consensus       259 ~~~~~~~g~~Y~lsk~~~~y~~~~~~~~-------------------~~~~~~~~vG~r~~F  301 (301)
T 2por_A          259 DVTYYGLGASYDLGGGASIVGGIADNDL-------------------PNSDMVADLGVKFKF  301 (301)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEEEEEECS-------------------SSCCCEEEEEEEEEC
T ss_pred             CEEEEEEEEEEECCCCEEEEEEEEEEEC-------------------CCCCEEEEEEEEEEC
T ss_conf             6269999999988999799999999966-------------------899737999869989


No 15 
>>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} (X:)
Probab=97.39  E-value=0.0064  Score=34.24  Aligned_cols=79  Identities=10%  Similarity=-0.011  Sum_probs=42.5

Q ss_pred             EEEEEEEEEEEEC---CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC--EEEEEEE
Q ss_conf             6798999863314---4034444011457530110002366665555434556530379873166732787--6888898
Q gi|254781078|r  129 YGDVVLKAGYSVD---SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYD--ISLSASY  203 (242)
Q Consensus       129 ~Gsvr~r~Gya~~---~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~n--wslraEY  203 (242)
                      .-.+..++||.+.   ++.+--..|+.|.+++......... .........+.......+|.-+++.+..+  +.++++|
T Consensus       154 ~~~~~~~~gy~~~~~~~~~l~P~~~l~~~~~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  232 (308)
T 1uyn_X          154 LMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGS-ALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGV  232 (308)
T ss_dssp             EEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESC-TTCCEECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEE
T ss_pred             EEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECC-CEEEEECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEE
T ss_conf             79999999899982696599999875777862455075077-41688625650266687689997521551679899899


Q ss_pred             EEEEC
Q ss_conf             88744
Q gi|254781078|r  204 RYIPH  208 (242)
Q Consensus       204 ~Y~d~  208 (242)
                      ++.-.
T Consensus       233 ~~~~~  237 (308)
T 1uyn_X          233 ERDLN  237 (308)
T ss_dssp             EEESS
T ss_pred             EEECC
T ss_conf             99706


No 16 
>>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell outer membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa} (X:322-632)
Probab=97.21  E-value=0.011  Score=33.04  Aligned_cols=111  Identities=13%  Similarity=0.092  Sum_probs=54.1

Q ss_pred             EEEEEEEEEE-----CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf             9899986331-----44034444011457530110002366665555434556530379873166732787688889888
Q gi|254781078|r  131 DVVLKAGYSV-----DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRY  205 (242)
Q Consensus       131 svr~r~Gya~-----~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y  205 (242)
                      .+..++||.+     +++.+.-.+++.|.+++.+...............+.+.......+|.-+++.+...+...++..|
T Consensus       156 ~~~~~~g~~~~~~~~~~~~i~P~~~l~~~~~~~~~~~E~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  235 (311)
T 3kvn_X          156 AFSARLGYDIAQQADSPWHLSPFVSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQLFAEYAH  235 (311)
T ss_dssp             EEEEEEEECSCSCTTCSEEEEEEEEEEEEEEEECCCBCSSCCTTCEEECCEEEEEEEEEEEEEEEEESSSSEEEEEEEEE
T ss_pred             EEEEEECEEEECCCCCCEEEEEEEEEEEEEEECCCEEECCCCCCCEEECCCCCCEEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf             99999356750256686899999999999985375354178720069816642089999999999961882689999999


Q ss_pred             EE--CCCCE-EE--C---CCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf             74--48730-00--3---66666644220123413899988620
Q gi|254781078|r  206 IP--HHIHS-VN--N---SNAKSDVERVDRKGNAHIASLGINMH  241 (242)
Q Consensus       206 ~d--~g~~~-~~--~---~~~~~~~~~~~~~~~~h~v~~GinY~  241 (242)
                      ..  .++.. ..  .   ++....+...+.+.+.-.+.+|+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  279 (311)
T 3kvn_X          236 EREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQK  279 (311)
T ss_dssp             EEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEEEEEEEEE
T ss_pred             EEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEEE
T ss_conf             82205897317999973788537884455788689999999999


No 17 
>>3prn_A Porin; integral membrane protein, pore eyelet mutant; HET: C8E; 1.90A {Rhodopseudomonas blastica} (A:)
Probab=97.10  E-value=0.014  Score=32.45  Aligned_cols=38  Identities=29%  Similarity=0.478  Sum_probs=32.4

Q ss_pred             EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             98731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .+.+|+||.+++++.+-+||.|.+.                     +-..+.+||.|+|
T Consensus       252 ~~~~g~~Y~l~k~~~~yae~~~~~~---------------------~~~~~~vG~r~~F  289 (289)
T 3prn_A          252 AYGIGADYQFAEGVKVSGSVQSGFA---------------------NETVADVGVRFDF  289 (289)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECTT---------------------CCEEEEEEEEEEC
T ss_pred             EEEEEEEEECCCCEEEEEEEEEEEC---------------------CCCEEEEEEEEEC
T ss_conf             8999999984898599999999708---------------------9825705757769


No 18 
>>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} (A:)
Probab=96.96  E-value=0.018  Score=31.71  Aligned_cols=49  Identities=18%  Similarity=0.316  Sum_probs=38.3

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             3798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      -..+.+|++|.+++++++.+||.|.+......            ..+.+...+.+|+.|+|
T Consensus       282 ~~~~~~g~~Y~~sk~~~~ya~~~~~~~~~~~~------------~~~~~~~~~~vG~r~~F  330 (330)
T 1pho_A          282 VNYIDVGATYYFNKNMSAFVDYKINQLDSDNK------------LNINNDDIVAVGMTYQF  330 (330)
T ss_dssp             EEEEEEEEEEESSSSEEEEEEEEEECCCSSCT------------TCCCCCCEEEEEEEEEC
T ss_pred             EEEEEEEEEEEECCCEEEEEEEEEEECCCCCC------------CCCCCCCEEEEEEEEEC
T ss_conf             59999999999079989999999982247766------------77666889999999989


No 19 
>>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae} (A:)
Probab=96.87  E-value=0.0086  Score=33.52  Aligned_cols=133  Identities=8%  Similarity=-0.054  Sum_probs=56.1

Q ss_pred             HHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCC----CCCEEEEEEEEEEEEEEEEEE---EC-------CCCCCCCC
Q ss_conf             98743652023433202543457532110330376----653000057444644103322---21-------45556666
Q gi|254781078|r   15 LSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDD----EYGIWSGNYVGLHISRLYETH---PL-------ADTINRKT   80 (242)
Q Consensus        15 ~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~----~~~~WtG~YiG~~~G~~~~~~---~~-------~d~~~~~~   80 (242)
                      +++++...+++.+.+.-.-.+...+......-.++    ....=+++.+|+.+|+-+...   ++       .+......
T Consensus         6 ~~~~~~a~~~~~~~yig~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gY~~~~~~~ve~~~~~~~~~~~~~~~~   85 (216)
T 2k0l_A            6 AIFVLNAAPKDNTWYAGGKLGWSQYHDTGFYGNGFQNNNGPTRNDQLGAGAFGGYQVNPYLGFEMGYDWLGRMAYKGSVD   85 (216)
T ss_dssp             SSCCSSSCSCCCCEEEEEEEECSCCCCSCCCCCSCCCSCCCSCCCCCEEEEEEEEEEETTEEEEEEEEECCCCCCCCSSC
T ss_pred             HHHHHCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCC
T ss_conf             43655077877989999998218860664325665456641037866899999978514443486146504201222245


Q ss_pred             CCCCCCCEEEEEEEEEEEEC-CEEE--EEEEEEEEECCCCCC-----CCCCCCCEEEEEEEEEEEEEEC-CEEEEE
Q ss_conf             67667550479988655445-7799--999886740477764-----3231010036798999863314-403444
Q gi|254781078|r   81 YNSLLPNGLGIELGHNIQLE-DFVF--GINCHTTAAKDDSTF-----YRLKEKYFIYGDVVLKAGYSVD-SLLIYG  147 (242)
Q Consensus        81 ~n~~~~~g~G~~~GYN~Q~~-~~V~--GvE~d~~~~~~~~~~-----~~~~~k~~~~Gsvr~r~Gya~~-~~l~Y~  147 (242)
                      .....-..+.+.++|.+.+. .+-+  ++-..+...+.+...     .....+..+...+-+-+.|.+. ++.+.+
T Consensus        86 ~~~~~~~~~~~~~~y~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y~l~~~~~l~~  161 (216)
T 2k0l_A           86 NGAFKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYASTGVSRSEHDTGVSPVFAGGVEWAVTRDIATRL  161 (216)
T ss_dssp             CCSSCCCEEEEEEEEEEESSSSEEEEEEEEEEEEECCCCCSCCCSSSCCCCCCEEEEEEEEEEEEEECSSSCEEEE
T ss_pred             CCCEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCEECCEEEEEECCCEEEEE
T ss_conf             7626888788999999862024117777447898601112014576321134563031351237998369979999


No 20 
>>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157} (A:)
Probab=96.76  E-value=0.027  Score=30.80  Aligned_cols=112  Identities=12%  Similarity=0.002  Sum_probs=63.2

Q ss_pred             EEEEEEEEEEEE--C-CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC-----CEEEE
Q ss_conf             679899986331--4-403444401145753011000236666555543455653037987316673278-----76888
Q gi|254781078|r  129 YGDVVLKAGYSV--D-SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNY-----DISLS  200 (242)
Q Consensus       129 ~Gsvr~r~Gya~--~-~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~-----nwslr  200 (242)
                      .-.+..++||.+  + .+.+--.+++.|.+++.+........ ........+....-..+|+-+++.+..     .+.++
T Consensus       125 ~~~~~~~~gy~~~~~~~~~l~P~~~l~y~~~~~~~~~e~~~~-~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  203 (285)
T 2qom_A          125 SWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQG-MHLSMKDKDYNPLIGRTGVDVGKSFSGKDWKVTARAG  203 (285)
T ss_dssp             EEEEEEEEEECEESSSSEEEEEEEEEEEEEEEEEEC---------CCCEEEEEEEEEEEEEEEEEEEEECSSEEEEEEEE
T ss_pred             EEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCC-CCCEECCCCEEEEEEEEEEEEEEEEECCCEEEEEEEE
T ss_conf             188746721679803671786789999999964773235774-3313304640068887543530113068807999999


Q ss_pred             EEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf             89888744873000366666644220123413899988620
Q gi|254781078|r  201 ASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMH  241 (242)
Q Consensus       201 aEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~  241 (242)
                      +.|++..-++..+...+........+.+.+.-.+.+|+++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  244 (285)
T 2qom_A          204 LGYQFDLLANGETVLRDASGEKRIKGEKDSRMLMSVGLNAE  244 (285)
T ss_dssp             EEEEEEEEETCTTBCCCSSSSCCSSSSEEEEEEEEEEEEEE
T ss_pred             EEEEEECCCCCEEEEECCCCCEEECCCCCCEEEEEEEEEEE
T ss_conf             99997217885289713454135036888679999989999


No 21 
>>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} (A:)
Probab=96.63  E-value=0.018  Score=31.82  Aligned_cols=10  Identities=0%  Similarity=-0.004  Sum_probs=4.5

Q ss_pred             EEEEEEEEEE
Q ss_conf             7998865544
Q gi|254781078|r   90 GIELGHNIQL   99 (242)
Q Consensus        90 G~~~GYN~Q~   99 (242)
                      .+-..|.+..
T Consensus        78 ~~~~~~~~~~   87 (171)
T 1qjp_A           78 QLTAKLGYPI   87 (171)
T ss_dssp             EEEEEEEEES
T ss_pred             EEEEEEEECC
T ss_conf             9999999814


No 22 
>>2jmm_A Outer membrane protein A; NMR {Escherichia coli} (A:)
Probab=95.98  E-value=0.053  Score=29.22  Aligned_cols=92  Identities=9%  Similarity=-0.105  Sum_probs=35.0

Q ss_pred             EEEEEEEEEEEEEEE---EECCCCCCCCCCCCCCCCEEEEEEEEEEEEC-CEEEEEEEEEEEECCC--CCC---CCCCCC
Q ss_conf             005744464410332---2214555666667667550479988655445-7799999886740477--764---323101
Q gi|254781078|r   55 SGNYVGLHISRLYET---HPLADTINRKTYNSLLPNGLGIELGHNIQLE-DFVFGINCHTTAAKDD--STF---YRLKEK  125 (242)
Q Consensus        55 tG~YiG~~~G~~~~~---~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~-~~V~GvE~d~~~~~~~--~~~---~~~~~k  125 (242)
                      ++.-.|+.+|+-+..   .+..-........+.....+.+.+.|++... +|-.=+.+-+.+...+  ...   .....+
T Consensus        22 ~~~~~g~~~gy~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~  101 (156)
T 2jmm_A           22 NQLGAGAFGGYQVNPYVGFEMGYDWLGRMPRKAQGVQLTAKLGYPKLGTDDLDIYTRLGGMVWRADTSDKDGNGYISAAE  101 (156)
T ss_dssp             SCCEEEEEEEEECSSSEEEEEEEEEECSSSSCEEEEEEEEEEEECTTCTTTCEEEEEEEEEEESSBCCCCCSSSCCCCCB
T ss_pred             CCCEEEEEEEEEECCCEEEEEEEEECCCCCEEEECCEEEEEEEEEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCC
T ss_conf             98587899988707878999978834666415423215467899970368542989831469983443203677433366


Q ss_pred             CEEEEEEEEEEEEEEC-CEEEE
Q ss_conf             0036798999863314-40344
Q gi|254781078|r  126 YFIYGDVVLKAGYSVD-SLLIY  146 (242)
Q Consensus       126 ~~~~Gsvr~r~Gya~~-~~l~Y  146 (242)
                      ..+-..+-+-+-|.+. ++.+.
T Consensus       102 ~~~~~~~g~G~~y~l~~~~~l~  123 (156)
T 2jmm_A          102 ASVSPVFAGGVEYVIRRRITPE  123 (156)
T ss_dssp             CCCCEEEEEEEEEECSSSCSSS
T ss_pred             CCCCEEEEEEEEEEECCCCCCC
T ss_conf             7628779989999864264734


No 23 
>>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} (A:)
Probab=95.75  E-value=0.1  Score=27.65  Aligned_cols=49  Identities=18%  Similarity=0.250  Sum_probs=37.7

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             3798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      -..+..|++|.++++..+-+||.|.+......            ..+.+...+.+||.|+|
T Consensus       292 ~~~~~vg~~Y~lsk~~~~y~~~~~~~~~~~~~------------~~~~~~~~~~~G~r~~F  340 (340)
T 2zfg_A          292 VNYFEVGATYYFNKNMSTYVDYIINQIDSDNK------------LGVGSDDTVAVGIVYQF  340 (340)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECCCTTCT------------TCCCCBCEEEEEEEEEC
T ss_pred             EEEEEEEEEEEECCCEEEEEEEEEECCCCCCC------------CCCCCCCEEEEEEEEEC
T ss_conf             38999999999169989999999952357766------------77766879999999989


No 24 
>>2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A (A:)
Probab=95.50  E-value=0.069  Score=28.58  Aligned_cols=30  Identities=10%  Similarity=-0.094  Sum_probs=16.7

Q ss_pred             CCCCEEEEEEEEEEEEEEC-CEEEEEEEEEE
Q ss_conf             1010036798999863314-40344440114
Q gi|254781078|r  123 KEKYFIYGDVVLKAGYSVD-SLLIYGMGGFG  152 (242)
Q Consensus       123 ~~k~~~~Gsvr~r~Gya~~-~~l~Y~~gG~A  152 (242)
                      ..+..+...+.+-+.|.+. ++.+.+.--+.
T Consensus       127 ~~~~~~~~~~g~G~~y~l~~~~~l~~eyry~  157 (197)
T 2f1v_A          127 SLKDSWGAAGQVGVDYLINRDWLVNMSVWYM  157 (197)
T ss_dssp             EECCEEEEEEEEEEEEECSSSEEEEEEEEEE
T ss_pred             CCCCCEEEEEECCEEEECCCCEEEEEEEEEE
T ss_conf             4566383899734899907983999999999


No 25 
>>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein; HET: BOG; 1.45A {Delftia acidovorans} (X:)
Probab=94.83  E-value=0.21  Score=25.98  Aligned_cols=62  Identities=15%  Similarity=0.129  Sum_probs=45.4

Q ss_pred             EEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCC-CCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             037987316673278768888988874487300036666-66442201234138999886209
Q gi|254781078|r  181 SSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAK-SDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       181 ~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~-~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      ..+.+-+|++|.++++..+.+||.|.+............ ..........+...+.+||.|+|
T Consensus       270 ~~~~~~~g~~y~l~k~~~~ya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Glr~~F  332 (332)
T 2fgq_X          270 KAHQITLGYVHNLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF  332 (332)
T ss_dssp             EEEEEEEEEEEESSSSEEEEEEEEEEEECTTCCCCCCBTTTBCSCCCTTCEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEECCCCCHHHHEEHHEECCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEC
T ss_conf             725999999996466718733024121258774210111002478789987699999999989


No 26 
>>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii} (A:)
Probab=94.50  E-value=0.25  Score=25.53  Aligned_cols=59  Identities=8%  Similarity=0.086  Sum_probs=32.2

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             3798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      -+++.++++|.++++|++.+.++|+.-.....  .+..........+.+...+.++++|+|
T Consensus       377 ~~~~~~~~~y~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~y~F  435 (441)
T 3bry_A          377 TTSLTGGVSYAIGKNDVIDFALSVALRKTLDN--ASQPNTAVPISVTHSQVNAVIAYQKRF  435 (441)
T ss_dssp             CEEEEEEEEEESSTTEEEEEEEEEECCBC---------------CEEEEEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEECCCEEEEEEEEEEECCCCCC--CCCCCCCCCEEEEEEEEEEEEEEEEEE
T ss_conf             88999888898089879999999997421013--566777530477899998999999996


No 27 
>>2o4v_A Porin P; outer membrane, phosphate, transport, channel, membrane protein; HET: C8E; 1.94A {Pseudomonas aeruginosa PAO1} (A:)
Probab=94.44  E-value=0.26  Score=25.45  Aligned_cols=54  Identities=15%  Similarity=0.229  Sum_probs=41.9

Q ss_pred             CCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             65303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  178 GHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       178 ~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      ....+..+-+|+.|.+++|+.+++||.+.+.......           ....+.+.+++.+.|+|
T Consensus       358 ~~~~~~~~~~g~~~~~~~n~~l~~~y~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~F  411 (411)
T 2o4v_A          358 GDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKISNA-----------NGDDSGDGLVMRLQYVF  411 (411)
T ss_dssp             SCEEEEEEEEEEEEECSSSEEEEEEEEEEEEESBCCT-----------TCCCEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC-----------CCCCCCCEEEEEEEEEC
T ss_conf             7760699999999998089999999999866656667-----------78886558999988889


No 28 
>>2erv_A Hypothetical protein PAER03002360; beta barrel, outer membrane, enzyme, hydrolase, lipopolysaccharide, membrane protein; HET: CXE; 2.00A {Pseudomonas aeruginosa} (A:)
Probab=93.88  E-value=0.34  Score=24.80  Aligned_cols=126  Identities=10%  Similarity=-0.027  Sum_probs=74.1

Q ss_pred             EEEEEEEEEE---CCEEEEEEEEEEEE--CCCCCCCCCCCCCEEEEEEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCC
Q ss_conf             7998865544---57799999886740--477764323101003679899986331440344440114575301100023
Q gi|254781078|r   90 GIELGHNIQL---EDFVFGINCHTTAA--KDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKV  164 (242)
Q Consensus        90 G~~~GYN~Q~---~~~V~GvE~d~~~~--~~~~~~~~~~~k~~~~Gsvr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~  164 (242)
                      +.+.++++..   +.+-+-.+.++..+  ..+......   ...--+...|..+...+.=+|+.+|++.+........  
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~e~g~G~~~~~~~~~~--   94 (150)
T 2erv_A           20 GLSWDWDKSWWQTSTGRLTGYWDAGYTYWEGGDEGAGK---HSLSFAPVFVYEFAGDSIKPFIEAGIGVAAFSGTRVG--   94 (150)
T ss_dssp             EEEEECCCCEEEETTEEEEEEEEEEEEEECCCSSCSSE---EEEEEEEEEEEEECCSSEEEEEEEEEEEEEESSSEET--
T ss_pred             EEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCC---EEEEEEEEEEEEECCCCCCEEEEEEECEEEEECCCCC--
T ss_conf             97907980120279853889987888883069966862---0785678999994699836799941044987042027--


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf             6666555543455653037987316673278768888988874487300036666664422012341389998862
Q gi|254781078|r  165 ESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINM  240 (242)
Q Consensus       165 ~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY  240 (242)
                               .+.=.++.=+...+|+.|.++++|.+.+-|+++-.         +  ++..-....|.+.+++|++|
T Consensus        95 ---------~~~~G~~f~F~~~lglgy~~~~~~~lgl~~~H~SN---------a--~~~~~NpG~n~~~l~~g~~f  150 (150)
T 2erv_A           95 ---------DQNLGSSLNFEDRIGAGLKFANGQSVGVRAIHYSN---------A--GLKQPNDGIESYSLFYKIPI  150 (150)
T ss_dssp             ---------TEECSCSEEEEEEEEEEEEETTSCEEEEEEEEEEC---------T--TSSTTCCCEEEEEEEEEEEC
T ss_pred             ---------CCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEC---------C--CCCCCCCCCCEEEEEEECCC
T ss_conf             ---------98767549873427889996799889999998505---------8--98989999206889996659


No 29 
>>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa} (X:)
Probab=93.73  E-value=0.36  Score=24.65  Aligned_cols=54  Identities=26%  Similarity=0.364  Sum_probs=29.1

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             3798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      -+.+-++++|.++++|++++.|.|++--...-.....       -.....|++.++++|+|
T Consensus       336 ~~g~el~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-------~~~~~~~~~~l~~~y~~  389 (451)
T 3dwo_X          336 TWTLAVGGDYKVTDQWTMRAGVAYDQTPTHNATRDPR-------IPDGDRYFASLGAGYRF  389 (451)
T ss_dssp             EEEEEEEEEEESSSSEEEEEEEEEECCSCCTTTCCSS-------SCCCCEEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCC-------CCCCCCEEEEEEEEEEE
T ss_conf             1258888999948978999999966678785431531-------00578779998899997


No 30 
>>3dwn_A Long-chain fatty acid transport protein; beta barrel, outer membrane protein, lipid transport, membrane, outer membrane, phage recognition; HET: LDA; 2.50A {Escherichia coli} PDB: 1t16_A* 1t1l_A* 2r4p_A* 2r4n_A* 2r4l_A* 2r4o_A* 2r89_A 2r8a_A* 2r88_A (A:)
Probab=93.38  E-value=0.41  Score=24.31  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=11.6

Q ss_pred             EEEEEEEEECCCCEEEEEEEEEE
Q ss_conf             98731667327876888898887
Q gi|254781078|r  184 VLGIGLDYMVNYDISLSASYRYI  206 (242)
Q Consensus       184 tvGaGVEYait~nwslraEY~Y~  206 (242)
                      ++.+++.|.++++|++.+.-+-+
T Consensus       368 ~~dl~~~y~~~~~~~l~~~v~NL  390 (427)
T 3dwn_A          368 WLSAGTTYAFNKDASVDVGVSYM  390 (427)
T ss_dssp             EEEEEEEEESSSSEEEEEEEEEE
T ss_pred             EEEEEEEEECCCCEEEEEEEEEE
T ss_conf             99987979838986999999999


No 31 
>>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A* (A:)
Probab=83.99  E-value=2.3  Score=20.19  Aligned_cols=60  Identities=10%  Similarity=0.081  Sum_probs=40.5

Q ss_pred             EEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             03798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  181 SSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       181 ~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      --+++.+++.|.+.++|++.+.++|..--....  .+....-.........+.+.+.++|.|
T Consensus       374 p~~~~~~~~~y~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~  433 (439)
T 3bs0_A          374 LKRHVTFGGEYDFDKDSRINLAISFGLRERVQT--PSYLAGTEMLRQSHSQINAVVSYSKNF  433 (439)
T ss_dssp             CSEEEEEEEEEESSSSEEEEEEEEEEEEEEEEC--------CCCCEEEEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEECCCEEEEEEEEEECCCCCCC--CCCCCCCCCEEEEEEEEEEEEEEEEEE
T ss_conf             888999879998089859999999970431013--677777553145667899999999896


No 32 
>>2wjr_A Probable N-acetylneuraminic acid outer membrane channel protein NANC; cell membrane, ION transport, transmembrane, porin, transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A* (A:)
Probab=81.09  E-value=3.1  Score=19.56  Aligned_cols=55  Identities=13%  Similarity=0.146  Sum_probs=35.8

Q ss_pred             CCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  177 DGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       177 d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +....-|..-.=+.|.+.++|.--+|+.+++-...+-           -..+...-..||||.|.|
T Consensus       160 ~~k~~~~e~n~~~~Yk~~~~w~PYvE~g~v~~~~~~~-----------~~~~~~q~r~RvGv~Y~F  214 (214)
T 2wjr_A          160 NHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYN-----------GRDNLSENSYRIGVSFKL  214 (214)
T ss_dssp             TSSSEEEEEEEEEEECSSSSEEEEEEEEECCSCEEET-----------TEEEECCEEEEEEEEECC
T ss_pred             CCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCC-----------CCCCCCCCEEEEEEEEEC
T ss_conf             8877416899999998589732369999841552017-----------764542426999989759


No 33 
>>2guf_A Vitamin B12 transporter BTUB; beta barrel, cubic mesophase, cobalamin, colicin, transport protein; HET: MPG; 1.95A {Escherichia coli} (A:134-594)
Probab=74.47  E-value=4.9  Score=18.46  Aligned_cols=50  Identities=8%  Similarity=0.092  Sum_probs=25.5

Q ss_pred             EEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  183 VVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       183 ~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +++-+.+.|.++++|++.++-+=+-  .+.+..        ....-..--++.+||+|+|
T Consensus       412 ~~~dl~~~y~~~~~~~l~~~v~NL~--d~~y~~--------~~~~~~~gR~~~~~~~~~F  461 (461)
T 2guf_A          412 SLWDLAVAYPVTSHLTVRGKIANLF--DKDYET--------VYGYQTAGREYTLSGSYTF  461 (461)
T ss_dssp             EEEEEEEEEESSSSEEEEEEEESTT--CCCC----------------CCCEEEEEEEEEC
T ss_pred             EEEEEEEEEEECCCEEEEEEEEECC--CCCEEE--------ECCCCCCCEEEEEEEEEEC
T ss_conf             9999999999389879999999489--995130--------2685689979999999989


No 34 
>>2qtk_A Probable porin; outer membrane protein, beta barrel, vanillate transport; HET: C8E; 2.80A {Pseudomonas aeruginosa} (A:)
Probab=68.72  E-value=6.7  Score=17.71  Aligned_cols=18  Identities=6%  Similarity=0.015  Sum_probs=12.1

Q ss_pred             CCCCCCEEEEEEEEEEEC
Q ss_conf             201234138999886209
Q gi|254781078|r  225 VDRKGNAHIASLGINMHF  242 (242)
Q Consensus       225 ~~~~~~~h~v~~GinY~F  242 (242)
                      .+.+.+...+|+=|.|+|
T Consensus       371 ~~~~~d~~~~r~~~~Y~f  388 (390)
T 2qtk_A          371 RSFNSDFDQTRLVVSYPL  388 (390)
T ss_dssp             ETTSCCEEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEEEEEE
T ss_conf             678898536999999771


No 35 
>>3jty_A BENF-like porin; PFL_1329, benzoate transporter, efflux pump, structural genomics, PSI-2, protein structure initiative; HET: LDA; 2.58A {Pseudomonas fluorescens pf-5} (A:)
Probab=61.31  E-value=9.3  Score=16.91  Aligned_cols=27  Identities=33%  Similarity=0.356  Sum_probs=14.5

Q ss_pred             EEEEEEEEEECCEEEEEEEEEEEECCC
Q ss_conf             799886554457799999886740477
Q gi|254781078|r   90 GIELGHNIQLEDFVFGINCHTTAAKDD  116 (242)
Q Consensus        90 G~~~GYN~Q~~~~V~GvE~d~~~~~~~  116 (242)
                      ++.+.|.+.++.+-+.+++.+.....+
T Consensus       212 ~~~~~y~~~~~~~~l~~~~~y~~~~~~  238 (402)
T 3jty_A          212 FINLIHSQPLGDWTLGANLGFFYGKED  238 (402)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCCCEEEEEEEEEEECCC
T ss_conf             453567778387128884799996156


No 36 
>>2odj_A Porin D; outer membrane protein, beta-barrel, amino acid transport; HET: C8E; 2.90A {Pseudomonas aeruginosa PAO1} (A:)
Probab=58.64  E-value=10  Score=16.64  Aligned_cols=49  Identities=14%  Similarity=0.219  Sum_probs=25.5

Q ss_pred             CEEEEEEEEEEEECCC----CEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             3037987316673278----76888898887448730003666666442201234138999886209
Q gi|254781078|r  180 GSSVVLGIGLDYMVNY----DISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       180 ~~G~tvGaGVEYait~----nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      ..+.-+.+=+-|.+++    ++++++.|-+++-.              ....+.+...+|+=++|+|
T Consensus       365 ~~~~E~~~~~~Y~~~~g~~K~L~~~~~~~~~~~d--------------~~~~~~d~~~~rl~~~Y~F  417 (428)
T 2odj_A          365 GKHHETNLEAKYVVQSGPAKDLSFRIRQAWHRAN--------------ADQGEGDQNEFRLIVDYPL  417 (428)
T ss_dssp             EEEEEEEEEEEEECCSSTTTTCEEEEEEEEEEEC--------------TTTSSCSBEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEECCCCCCCCEEEEEEEEEECC--------------CCCCCCCCEEEEEEEEEEE
T ss_conf             7415897899999788875783899999999546--------------7657898648999999390


No 37 
>>3efm_A FAUA, ferric alcaligin siderophore receptor; membrane protein, membrane receptor, membrane transporter, membrane, TONB box; 2.33A {Bordetella pertussis} (A:158-707)
Probab=51.94  E-value=14  Score=16.01  Aligned_cols=22  Identities=9%  Similarity=0.161  Sum_probs=14.4

Q ss_pred             EEEEEEEEEECCCCEEEEEEEE
Q ss_conf             7987316673278768888988
Q gi|254781078|r  183 VVLGIGLDYMVNYDISLSASYR  204 (242)
Q Consensus       183 ~tvGaGVEYait~nwslraEY~  204 (242)
                      +++-+.+.|.++++|++.+.-+
T Consensus       496 ~~~dl~~~y~~~~~~~l~~~v~  517 (550)
T 3efm_A          496 ALVSLMARFDFNKKLSATLNVN  517 (550)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEECCCEEEEEEEE
T ss_conf             9999999999599989999999


No 38 
>>2w16_A FPVA, ferripyoverdine receptor; FPVA, iron, membrane, TONB BOX, transport, siderophore, cell membrane; HET: N8E PVE FHO; 2.71A {Pseudomonas aeruginosa} PDB: 2o5p_A* 2iah_A* 2w6t_A* 2w6u_A* 2w75_A* 2w76_A* 2w77_A* 2w78_A* 1xkh_A* (A:109-772)
Probab=34.84  E-value=26  Score=14.49  Aligned_cols=56  Identities=11%  Similarity=0.072  Sum_probs=31.6

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             3798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      =+++-+.+.|.++++|++.++-+=+-- ++-.......    ..-.-..--++.++|+|+|
T Consensus       609 y~~~d~~~~y~~~~~~~l~~~v~Nl~d-~~y~~~~~~~----~~~~~~~gR~~~~~~~~~F  664 (664)
T 2w16_A          609 YWLVDLMARYQITDKLSASVNVNNVFD-KTYYTNIGFY----TSASYGDPRNLMFSTRWDF  664 (664)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEESTTC-CCCEEEECTT----SEEEECCCSEEEEEEEEEC
T ss_pred             EEEEEEEEEEEECCCEEEEEEEEECCC-CHHHCCCCCC----CCCEECCCEEEEEEEEEEC
T ss_conf             799998999996998899999995889-8040035545----6610579989999999989


No 39 
>>3fid_A Putative outer membrane protein (LPXR); lipopolysaccharide-modifying outer membrane enzyme; HET: CXE; 1.90A {Salmonella typhimurium} (A:)
Probab=24.93  E-value=39  Score=13.51  Aligned_cols=129  Identities=11%  Similarity=0.029  Sum_probs=57.7

Q ss_pred             EEEEEEECC-EEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCCC--CCC
Q ss_conf             886554457-79999988674047776432310100367989998633144034444011457530110002366--665
Q gi|254781078|r   93 LGHNIQLED-FVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVES--DNS  169 (242)
Q Consensus        93 ~GYN~Q~~~-~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~~~--~~~  169 (242)
                      -|++.|+.| +++-+..+....-.       .....+.-+++..++-.++++.-|+..|+-+---+.........  ...
T Consensus       131 ~GWd~Qi~ne~~~~l~~e~~~~~~-------~~~~~~~~d~~~~~~~~lGn~~t~a~~G~~~R~G~~l~~~~~~~~~~~~  203 (296)
T 3fid_A          131 PAWQDQIENRYGYTAKGMVSLTPA-------IDILGVNVGFYPEVSAVGGNLFQYLGYGATVALGNDKTFNSDNGFGLLS  203 (296)
T ss_dssp             GGGGGCBCCEEEEEEEEEEEECCE-------EEETTEEEEEEEEEEEEEESSEEEEEEEEEEEEESCHHHHTCCCCGGGC
T ss_pred             CCHHHHCCCCCEEEEEEEEEECCC-------CCCCCCEEEEEEEEEEEECCEEEEEECCEEEEEECCCCCCCCCCCCCCC
T ss_conf             741776676216887766750014-------5667865889888779823246754144599961366666556776546


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCC-CCCCCCCCCEEEEEEEEEEEC
Q ss_conf             5554345565303798731667327876888898887448730003666666-442201234138999886209
Q gi|254781078|r  170 KNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSD-VERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       170 ~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~-~~~~~~~~~~h~v~~GinY~F  242 (242)
                      ............+|-+=+            ++|.+|+.+.-. ++ .+...+ ...++.+.-...+++|+.+++
T Consensus       204 ~~~~~~~~~~~~~~~~f~------------g~~~~~v~~d~~-Ld-Gn~f~~s~~~v~~~~~v~~~~~G~~~~~  263 (296)
T 3fid_A          204 RRGLIHTQKEGLIYKVFA------------GVERREVDKNYT-LQ-GKTLQTKMETVDINKTVDEYRVGATIGY  263 (296)
T ss_dssp             CTTCCCCCCCSEEEEEEE------------EEEEEEEEEEHH-HH-SCBTTTCCCCCCBCSEEEEEEEEEEEEE
T ss_pred             CCCCCCCCCCCCEEEEEE------------EEEEEEEEEEEE-EE-CCCCCCCCCCCCCCEEEEEEEEEEEEEE
T ss_conf             666565688872699999------------416999998779-73-7755788985200102689999999996


No 40 
>>2hdi_A Colicin I receptor; outer membrane, iron transport, TONB BOX, signal transduction, colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli} PDB: 2hdf_A* (A:136-639)
Probab=21.99  E-value=45  Score=13.18  Aligned_cols=10  Identities=10%  Similarity=0.288  Sum_probs=4.7

Q ss_pred             EEEEEEEEEC
Q ss_conf             8999886209
Q gi|254781078|r  233 IASLGINMHF  242 (242)
Q Consensus       233 ~v~~GinY~F  242 (242)
                      ++.++|+|+|
T Consensus       495 ~~~~~~~~~F  504 (504)
T 2hdi_A          495 RYFMAVDYRF  504 (504)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEC
T ss_conf             9999999989


Done!