Query gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 242 No_of_seqs 152 out of 223 Neff 5.0 Searched_HMMs 33803 Date Wed Jun 1 22:44:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781078.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1p4t_A Outer membrane protein 99.9 3.2E-22 9.5E-27 139.8 19.5 151 55-242 4-155 (155) 2 >2f1v_A Outer membrane protein 99.9 7E-23 2.1E-27 143.5 15.3 185 53-242 2-191 (197) 3 >1qjp_A Outer membrane protein 99.9 6.1E-21 1.8E-25 132.8 18.0 165 53-242 3-170 (171) 4 >2k0l_A Outer membrane protein 99.8 4.6E-19 1.3E-23 122.6 18.4 173 52-242 14-192 (216) 5 >1orm_A Outer membrane protein 99.8 1.4E-21 4.2E-26 136.3 -4.6 129 86-242 19-148 (148) 6 >2jmm_A Outer membrane protein 99.8 5.4E-17 1.6E-21 111.3 16.0 146 54-242 4-150 (156) 7 >1uyn_X NALP; autotransporter, 99.1 2.2E-08 6.6E-13 64.1 18.1 169 56-242 120-308 (308) 8 >2f1c_X OMPG, outer membrane p 99.1 1.9E-08 5.5E-13 64.5 17.7 53 177-242 228-280 (286) 9 >2qom_A Serine protease ESPP; 99.1 2.6E-08 7.8E-13 63.7 18.2 168 55-242 92-277 (285) 10 >3kvn_X Esterase ESTA; beta ba 98.8 4E-06 1.2E-10 51.8 18.3 138 87-242 155-311 (311) 11 >1i78_A Protease VII; integral 98.4 4.4E-05 1.3E-09 46.1 14.9 151 90-242 113-297 (297) 12 >2vdf_A OPCA, outer membrane p 97.7 0.0025 7.3E-08 36.5 14.6 18 225-242 236-253 (253) 13 >2j1n_A Outer membrane protein 97.5 0.0044 1.3E-07 35.1 19.8 52 182-242 295-346 (346) 14 >2por_A Porin; HET: C8E; 1.80A 97.4 0.0056 1.6E-07 34.6 19.8 43 181-242 259-301 (301) 15 >1uyn_X NALP; autotransporter, 97.4 0.0064 1.9E-07 34.2 16.4 79 129-208 154-237 (308) 16 >3kvn_X Esterase ESTA; beta ba 97.2 0.011 3.1E-07 33.0 17.9 111 131-241 156-279 (311) 17 >3prn_A Porin; integral membra 97.1 0.014 4E-07 32.4 16.6 38 184-242 252-289 (289) 18 >1pho_A Phosphoporin; outer me 97.0 0.018 5.5E-07 31.7 19.9 49 182-242 282-330 (330) 19 >2k0l_A Outer membrane protein 96.9 0.0086 2.6E-07 33.5 8.5 133 15-147 6-161 (216) 20 >2qom_A Serine protease ESPP; 96.8 0.027 8E-07 30.8 18.3 112 129-241 125-244 (285) 21 >1qjp_A Outer membrane protein 96.6 0.018 5.2E-07 31.8 8.7 10 90-99 78-87 (171) 22 >2jmm_A Outer membrane protein 96.0 0.053 1.6E-06 29.2 8.2 92 55-146 22-123 (156) 23 >2zfg_A Outer membrane protein 95.7 0.1 3E-06 27.7 20.0 49 182-242 292-340 (340) 24 >2f1v_A Outer membrane protein 95.5 0.069 2E-06 28.6 7.2 30 123-152 127-157 (197) 25 >2fgq_X OMP32, outer membrane 94.8 0.21 6.1E-06 26.0 19.2 62 181-242 270-332 (332) 26 >3bry_A TBUX; beta barrel, out 94.5 0.25 7.4E-06 25.5 15.9 59 182-242 377-435 (441) 27 >2o4v_A Porin P; outer membran 94.4 0.26 7.6E-06 25.5 16.7 54 178-242 358-411 (411) 28 >2erv_A Hypothetical protein P 93.9 0.34 1E-05 24.8 17.5 126 90-240 20-150 (150) 29 >3dwo_X Probable outer membran 93.7 0.36 1.1E-05 24.7 9.8 54 182-242 336-389 (451) 30 >3dwn_A Long-chain fatty acid 93.4 0.41 1.2E-05 24.3 10.1 23 184-206 368-390 (427) 31 >3bs0_A TODX; beta barrel, out 84.0 2.3 6.9E-05 20.2 16.1 60 181-242 374-433 (439) 32 >2wjr_A Probable N-acetylneura 81.1 3.1 9.1E-05 19.6 18.7 55 177-242 160-214 (214) 33 >2guf_A Vitamin B12 transporte 74.5 4.9 0.00014 18.5 17.1 50 183-242 412-461 (461) 34 >2qtk_A Probable porin; outer 68.7 6.7 0.0002 17.7 18.5 18 225-242 371-388 (390) 35 >3jty_A BENF-like porin; PFL_1 61.3 9.3 0.00028 16.9 16.7 27 90-116 212-238 (402) 36 >2odj_A Porin D; outer membran 58.6 10 0.00031 16.6 17.5 49 180-242 365-417 (428) 37 >3efm_A FAUA, ferric alcaligin 51.9 14 0.0004 16.0 13.5 22 183-204 496-517 (550) 38 >2w16_A FPVA, ferripyoverdine 34.8 26 0.00077 14.5 15.5 56 182-242 609-664 (664) 39 >3fid_A Putative outer membran 24.9 39 0.0012 13.5 12.7 129 93-242 131-263 (296) 40 >2hdi_A Colicin I receptor; ou 22.0 45 0.0013 13.2 15.6 10 233-242 495-504 (504) No 1 >>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} (A:) Probab=99.91 E-value=3.2e-22 Score=139.85 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=113.3 Q ss_pred EEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEE Q ss_conf 00574446441033222145556666676675504799886554457799999886740477764323101003679899 Q gi|254781078|r 55 SGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVL 134 (242) Q Consensus 55 tG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~ 134 (242) +|+|||+.+|+.+...+..+. ....+|+++|| |+++|.+.+|.+........... . ......+-+ T Consensus 4 ~~~yvg~~~G~~~~~~~~~~~---------~~~~~g~~~GY--~fn~~~~e~~~~~~~~~~~~~~~-~---~~~~~~l~~ 68 (155) T 1p4t_A 4 SGFYVQADAAHAKASSSLGSA---------KGFSPRISAGY--RINDLRFAVDYTRYKNYKAPSTD-F---KLYSIGASA 68 (155) T ss_dssp EEEEEEEEEEEEEEECSSCEE---------EEECCEEEEEE--EETTEEEEEEEEEEEESSCCSSC-C---EEEEEEEEE T ss_pred CCEEEEEECEEEECCCCCCCC---------CCEEEEEEEEE--ECCCEEEEEEEEEECCCCCCCCE-E---EEEEEEEEE T ss_conf 642897864176134766778---------85748999999--80799999999995354678702-5---788999999 Q ss_pred EEEEEE-CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEE Q ss_conf 986331-4403444401145753011000236666555543455653037987316673278768888988874487300 Q gi|254781078|r 135 KAGYSV-DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSV 213 (242) Q Consensus 135 r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~ 213 (242) +..+.+ +++.||+++|+++.+++.+. ......+++..+|.+|+|+||+++|||++++||||+++++. T Consensus 69 ~~~~~~~~~~~~Y~~~G~~~~~~~~~~----------~~~~~~~~~~~~~~~g~G~~y~i~~~~~~~~~y~y~~~~~~-- 136 (155) T 1p4t_A 69 IYDFDTQSPVKPYLGARLSLNRASVDL----------GGSDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKV-- 136 (155) T ss_dssp EEECCCSSSEEEEEEEEEEEEEEEEEE----------TTEEEECCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-- T ss_pred EEEECCCCCEEEEEEEEEEEEEEEEEC----------CCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEECCCC-- T ss_conf 998436785669999889999998201----------55565566327314731799994589999999999976676-- Q ss_pred ECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 03666666442201234138999886209 Q gi|254781078|r 214 NNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 214 ~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) ..+.+.+.|.+++||+||| T Consensus 137 ----------~~~~~~~~~~~~lGv~Y~F 155 (155) T 1p4t_A 137 ----------NTVKNVRSGELSAGVRVKF 155 (155) T ss_dssp ----------TTEEEEEEEEEEEEEEEEC T ss_pred ----------CCCCCEEEEEEEEEEEEEC T ss_conf ----------6575200228999999999 No 2 >>2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A (A:) Probab=99.91 E-value=7e-23 Score=143.47 Aligned_cols=185 Identities=9% Similarity=0.007 Sum_probs=121.8 Q ss_pred EEEEEEEEEEEEEEEEEEECCCCCCCCCC-CCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCC-CC---CCCCCCCCE Q ss_conf 00005744464410332221455566666-76675504799886554457799999886740477-76---432310100 Q gi|254781078|r 53 IWSGNYVGLHISRLYETHPLADTINRKTY-NSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDD-ST---FYRLKEKYF 127 (242) Q Consensus 53 ~WtG~YiG~~~G~~~~~~~~~d~~~~~~~-n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~-~~---~~~~~~k~~ 127 (242) .|+|+|||+++|+.+...+.......... ....+..+++++||+++ .+|-+.+|..+...... .. ...-..... T Consensus 2 ~~~g~Yig~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gy~~~-~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (197) T 2f1v_A 2 EAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTNNTQLGLTFTYMAT-DNIGVELLAATPFRHKIGTRATGDIATVHHLP 80 (197) T ss_dssp CTTCEEEEEEEEEEECCCC---------CCEECCEEEEEEEEEEESS-SSEEEEEEEESCEEEEEEETTTEEEEEEEEEC T ss_pred CCCCEEEEECEEEECCCCCCCCCCCCCCCEEECCCEEEEEEEEEEEE-CCCEEEEEEEEEEEEEECCCCCCCCCCEEEEC T ss_conf 77788999466998864678864367663486787488689999950-67215667656100010124777522045504 Q ss_pred EEEEEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEE Q ss_conf 36798999863314403444401145753011000236666555543455653037987316673278768888988874 Q gi|254781078|r 128 IYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIP 207 (242) Q Consensus 128 ~~Gsvr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d 207 (242) ....++-+.....+++.||+.+|+++++++......... ........++++++|.+|+|++|.|+++|++++||||++ T Consensus 81 ~~~~~~y~~~~~~~~~~py~~~G~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~G~~y~l~~~~~l~~eyry~~ 158 (197) T 2f1v_A 81 PTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGK--EAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMD 158 (197) T ss_dssp CEEEEEEECSCTTCSEEEEEEEEEEEEEEEEEEECHHHH--HTTEEEEEECCEEEEEEEEEEEEECSSSEEEEEEEEEEC T ss_pred CEEEEEEEECCCCCCEEEEEEECCEEEEEEECCCCCCCC--CCCCCCCCCCCCEEEEEECCEEEECCCCEEEEEEEEEEE T ss_conf 248899986177775889997321778996000156776--542212445663838997348999079839999999997 Q ss_pred CCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 48730003666666442201234138999886209 Q gi|254781078|r 208 HHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 208 ~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) +.++....... .....+.+.+.|.+++||+||| T Consensus 159 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~~Y~F 191 (197) T 2f1v_A 159 IDTTANYKLGG--AQQHDSVRLDPWVFMFSAGYRF 191 (197) T ss_dssp CEEEEEEEESS--CCCCEEEECCCEEEEEEEEEEE T ss_pred CCCCEEEECCC--CCCCEEEEECCEEEEEEEEEEE T ss_conf 45515784288--6311048727138999999996 No 3 >>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} (A:) Probab=99.88 E-value=6.1e-21 Score=132.85 Aligned_cols=165 Identities=17% Similarity=0.044 Sum_probs=112.7 Q ss_pred EEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCC---CCCCCCCEEE Q ss_conf 0000574446441033222145556666676675504799886554457799999886740477764---3231010036 Q gi|254781078|r 53 IWSGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTF---YRLKEKYFIY 129 (242) Q Consensus 53 ~WtG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~---~~~~~k~~~~ 129 (242) .|+|+|||+++|+.+...+...+.. ......+..+|+.+|| |+.+. +++|+.+.+....... ...+.+...+ T Consensus 3 ~~~~~yvg~~~g~~~~~~~~~~~~~--~~~~~~~~~~g~~~Gy--~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (171) T 1qjp_A 3 KDNTWYTGAKLGWSQYHDTGLINNN--GPTHENKLGAGAFGGY--QVNPY-VGFEMGYDWLGRMPYKGSVENGAYKAQGV 77 (171) T ss_dssp CTTEEEEEEEEEEEC---------------CCCEEEEEEEEEE--EEETT-EEEEEEEEEEEECCC-------CEEEEEE T ss_pred CCCCEEEEEEEEEEEECCCCCCCCC--CCCCCCCEEEEEEEEE--ECCCC-EEEEEEEEECCCCCCCCCCCCCCEEEEEE T ss_conf 6797999998622995165332677--6315897389999999--91587-89999999658532013454440487889 Q ss_pred EEEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECC Q ss_conf 79899986331440344440114575301100023666655554345565303798731667327876888898887448 Q gi|254781078|r 130 GDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHH 209 (242) Q Consensus 130 Gsvr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g 209 (242) .....+.....++++||+++|+++.+.+... ......+.+..++.+|+|+||.|+++|++++||||+... T Consensus 78 ~~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~----------~~~~~~~~~~~~~~~g~G~~y~l~~~~~i~~e~~~~~~~ 147 (171) T 1qjp_A 78 QLTAKLGYPITDDLDIYTRLGGMVWRADTYS----------NVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNI 147 (171) T ss_dssp EEEEEEEEESSSSEEEEEEEEEEEEEEEEEC----------SSSCEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEC-- T ss_pred EEEEEEEECCCCCCEEEEEEEEEEEEEEEEE----------CCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEECC T ss_conf 9999999814776147678636899621100----------246514467432588827999935997999999999725 Q ss_pred CCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 730003666666442201234138999886209 Q gi|254781078|r 210 IHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) .+.. ..+.+.+.|.+.+||+||| T Consensus 148 ~~~~----------~~~~~~~~~~~~~G~~y~F 170 (171) T 1qjp_A 148 GDAH----------TIGTRPDNGMLSLGVSYRF 170 (171) T ss_dssp ----------------------CEEEEEEEEEC T ss_pred CCCC----------CCCCCCCCCEEEEEEEEEC T ss_conf 8765----------5441112458999999988 No 4 >>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae} (A:) Probab=99.84 E-value=4.6e-19 Score=122.60 Aligned_cols=173 Identities=16% Similarity=0.068 Sum_probs=116.0 Q ss_pred CEEEEEEEEEEEEEEEEEEECCCCCCCC---CCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCC-CCCCCCE Q ss_conf 3000057444644103322214555666---66766755047998865544577999998867404777643-2310100 Q gi|254781078|r 52 GIWSGNYVGLHISRLYETHPLADTINRK---TYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFY-RLKEKYF 127 (242) Q Consensus 52 ~~WtG~YiG~~~G~~~~~~~~~d~~~~~---~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~-~~~~k~~ 127 (242) -.|+++|||+.+|+.+............ +.......++|+.+|| |+.+. +++|+++++...+.... ....+.+ T Consensus 14 ~~~~~~yig~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gY--~~~~~-~~ve~~~~~~~~~~~~~~~~~~~~~ 90 (216) T 2k0l_A 14 PKDNTWYAGGKLGWSQYHDTGFYGNGFQNNNGPTRNDQLGAGAFGGY--QVNPY-LGFEMGYDWLGRMAYKGSVDNGAFK 90 (216) T ss_dssp SCCCCEEEEEEEECSCCCCSCCCCCSCCCSCCCSCCCCCEEEEEEEE--EEETT-EEEEEEEEECCCCCCCCSSCCCSSC T ss_pred CCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEE--EECCC-CCEEEEEEECCCCCCCCCCCCCCEE T ss_conf 87798999999821886066432566545664103786689999997--85144-4348614650420122224576268 Q ss_pred E-EEEEEEEEEEEE-CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEE Q ss_conf 3-679899986331-44034444011457530110002366665555434556530379873166732787688889888 Q gi|254781078|r 128 I-YGDVVLKAGYSV-DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRY 205 (242) Q Consensus 128 ~-~Gsvr~r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y 205 (242) . .-.+.++..+.. +++.||+.+|+++.+.+....... .......+.+.+++.+|+|+||.|+++|++++|||| T Consensus 91 ~~~~~~~~~y~~~~~~~~~~y~~~G~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~G~~y~l~~~~~l~~~~~y 165 (216) T 2k0l_A 91 AQGVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYAS-----TGVSRSEHDTGVSPVFAGGVEWAVTRDIATRLEYQW 165 (216) T ss_dssp CCEEEEEEEEEEESSSSEEEEEEEEEEEEECCCCCSCCC-----SSSCCCCCCEEEEEEEEEEEEEECSSSCEEEEEESS T ss_pred EEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCEEECCC-----CCCCCCCCCCCCCCEECCEEEEEECCCEEEEEEEEE T ss_conf 887889999998620241177774478986011120145-----763211345630313512379983699799999999 Q ss_pred EECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 7448730003666666442201234138999886209 Q gi|254781078|r 206 IPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 206 ~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) ++..+... ..+.+.+.+.+++||+||| T Consensus 166 ~~~~~~~~----------~~~~~~~~~~~~~Gl~Y~F 192 (216) T 2k0l_A 166 VNNIGDAG----------TVGTRPDNGMLSLGVSYRF 192 (216) T ss_dssp CSSCCCCS----------CCCCSSCSCCCEEEEEEEC T ss_pred EECCCCCC----------CCCCCCCCCEEEEEEEEEC T ss_conf 95368655----------5553233678999999999 No 5 >>1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents, lipids, micelles; NMR {Escherichia coli} (A:) Probab=99.78 E-value=1.4e-21 Score=136.34 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=103.8 Q ss_pred CCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEE-CCEEEEEEEEEEEEEEECCCCCCC Q ss_conf 5504799886554457799999886740477764323101003679899986331-440344440114575301100023 Q gi|254781078|r 86 PNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSV-DSLLIYGMGGFGGAYVIDSSLEKV 164 (242) Q Consensus 86 ~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~ 164 (242) ....|+++||+||+.++++++|+.+++.+.............+..++.++..|.+ +++.||+++|+++.+.+.+. T Consensus 19 ~~~~g~~~gy~~~f~~~~~~~E~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Y~~~G~~~~~~~~~~---- 94 (148) T 1orm_A 19 NKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTE---- 94 (148) T ss_dssp CCCCCCCCCBCCCSSSCSCCCCBCCCCCCCCCCSSSCCSCCSCCCBCCBCCCCCCTTTCCCCCCEECBCCSCSCCS---- T ss_pred CCCCEEEEEECEECCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECC---- T ss_conf 8410699996989588169999999954466730346222212899998888960786469999867789844213---- Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 666655554345565303798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 165 ESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 165 ~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) ......+.+.+++.+|+|+||.|+|||++++||||++.+ +.+.+.+++||+||| T Consensus 95 ------~~~~~~~~~~~~~~~g~G~~y~l~~~~~~~~ey~~~~~~------------------d~~~~~~~~Gv~y~F 148 (148) T 1orm_A 95 ------YPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIR------------------SVDVGTWIAGVGYRF 148 (148) T ss_dssp ------SSSCCCCCCCCCCEECCCCCCCCSSSCBCCCCCCCCCSS------------------SCCCCCCCCCCBCCC T ss_pred ------CCCCCCCCCEEEEEEECCEEEECCCCEEEEEEEEEEECC------------------CCEEEEEEEEEEEEC T ss_conf ------776445654043888431799727887999999997469------------------951206999999989 No 6 >>2jmm_A Outer membrane protein A; NMR {Escherichia coli} (A:) Probab=99.76 E-value=5.4e-17 Score=111.26 Aligned_cols=146 Identities=17% Similarity=0.053 Sum_probs=103.9 Q ss_pred EEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEE Q ss_conf 00057444644103322214555666667667550479988655445779999988674047776432310100367989 Q gi|254781078|r 54 WSGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVV 133 (242) Q Consensus 54 WtG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr 133 (242) .+++|||+++|+.+...+ ...++|+.+|| ++.+. +++|+.+.+........... ...+. T Consensus 4 ~~~~yig~~~g~~~~~~~-------------~~~~~g~~~gy--~~~~~-~~~e~~~~~~~~~~~~~~~~-----~~~~~ 62 (156) T 2jmm_A 4 DNTWYTGAKLGWSQYSRE-------------NQLGAGAFGGY--QVNPY-VGFEMGYDWLGRMPRKAQGV-----QLTAK 62 (156) T ss_dssp SSEEEEEEEEEEETTCCS-------------SCCEEEEEEEE--ECSSS-EEEEEEEEEECSSSSCEEEE-----EEEEE T ss_pred CCCEEEEEECCCEEECCC-------------CCCEEEEEEEE--EECCC-EEEEEEEEECCCCCEEEECC-----EEEEE T ss_conf 796879787121214378-------------98587899988--70787-89999788346664154232-----15467 Q ss_pred EEEEEEE-CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCE Q ss_conf 9986331-440344440114575301100023666655554345565303798731667327876888898887448730 Q gi|254781078|r 134 LKAGYSV-DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHS 212 (242) Q Consensus 134 ~r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~ 212 (242) ++.-+.. +++.||+++|+++.+.+.+.. ........+.+.+++.+|+|++|.++++|++++||||+.. T Consensus 63 ~~~~~~~~~~~~~y~~~G~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~G~~y~l~~~~~l~~e~~~~~~---- 131 (156) T 2jmm_A 63 LGYPKLGTDDLDIYTRLGGMVWRADTSDK-------DGNGYISAAEASVSPVFAGGVEYVIRRRITPEIATRLEYQ---- 131 (156) T ss_dssp EEECTTCTTTCEEEEEEEEEEESSBCCCC-------CSSSCCCCCBCCCCEEEEEEEEEECSSSCSSSEEEEEEEE---- T ss_pred EEEEECCCCCEEEEEEEEEEEEEEEEEEC-------CCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEE---- T ss_conf 89997036854298983146998344320-------3677433366762877998999986426473437999999---- Q ss_pred EECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 003666666442201234138999886209 Q gi|254781078|r 213 VNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) ..+.+.+.+.+++||+|+| T Consensus 132 -----------~~d~~~~~~~~~~Gl~Y~F 150 (156) T 2jmm_A 132 -----------WTNNASDNGMLSLGVSYRF 150 (156) T ss_dssp -----------EESSSSCEEEEEEEEEEES T ss_pred -----------EECCCCCCCEEEEEEEEEC T ss_conf -----------8268887777999899998 No 7 >>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} (X:) Probab=99.12 E-value=2.2e-08 Score=64.11 Aligned_cols=169 Identities=14% Similarity=0.125 Sum_probs=102.3 Q ss_pred EEEEEEEEEEEEEEEECCCCCCCC--CCCCC--CCCEEEEEEEEEEEEC-CEEEEEEEEEEEECC--CC-----CCCCCC Q ss_conf 057444644103322214555666--66766--7550479988655445-779999988674047--77-----643231 Q gi|254781078|r 56 GNYVGLHISRLYETHPLADTINRK--TYNSL--LPNGLGIELGHNIQLE-DFVFGINCHTTAAKD--DS-----TFYRLK 123 (242) Q Consensus 56 G~YiG~~~G~~~~~~~~~d~~~~~--~~n~~--~~~g~G~~~GYN~Q~~-~~V~GvE~d~~~~~~--~~-----~~~~~~ 123 (242) ++|+.+.+++++.+.+........ ..... ....+.+.+||+++++ +|.+-..+.+.+... +. ....++ T Consensus 120 ~~~~~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~l~P~~~l~~~~~~~~~~~e~g~~~~~~ 199 (308) T 1uyn_X 120 IGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWS 199 (308) T ss_dssp TEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCE T ss_pred CEEEEEEEEEEEEECCEEEEECCCCCCEEEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECCCEEEE T ss_conf 71379998899980304553113553112662017999999989998269659999987577786245507507741688 Q ss_pred CCCEEEEEEEEEEEEE----EC-CEEEEEEEEEEEEEEECCCCC--CCC-CCCCCCCCCCCCCCCEEEEEEEEEEEECCC Q ss_conf 0100367989998633----14-403444401145753011000--236-666555543455653037987316673278 Q gi|254781078|r 124 EKYFIYGDVVLKAGYS----VD-SLLIYGMGGFGGAYVIDSSLE--KVE-SDNSKNAKGRFDGHGSSVVLGIGLDYMVNY 195 (242) Q Consensus 124 ~k~~~~Gsvr~r~Gya----~~-~~l~Y~~gG~A~~~~~~~~~~--~~~-~~~~~~~~~~~d~t~~G~tvGaGVEYait~ 195 (242) .+......+++++|.. ++ ..-|++..++-..-....... ... ...........+..+....+++|+|+.+++ T Consensus 200 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 279 (308) T 1uyn_X 200 GNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGN 279 (308) T ss_dssp ECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEEEEET T ss_pred ECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEEEECC T ss_conf 62565026668768999752155167989989999706898416999962787515774357887469999969999879 Q ss_pred CEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 76888898887448730003666666442201234138999886209 Q gi|254781078|r 196 DISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 196 nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) +|++.++|.+. ...+.+.|.+.+||+|+| T Consensus 280 ~~~~~~~~~~~------------------~~~~~~~~~~~~gl~~~F 308 (308) T 1uyn_X 280 GWNGLARYSYA------------------GSKQYGNHSGRVGVGYRF 308 (308) T ss_dssp TEEEEEEEEEE------------------EETTEEEEEEEEEEEEEC T ss_pred CEEEEEEEEEE------------------ECCCCCEEEEEEEEEEEC T ss_conf 98999999999------------------777851189999999989 No 8 >>2f1c_X OMPG, outer membrane protein G; beta barrel; HET: C8E; 2.30A {Escherichia coli K12} PDB: 2jqy_A 2iwv_A* 2iww_A* (X:) Probab=99.12 E-value=1.9e-08 Score=64.52 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=42.6 Q ss_pred CCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 565303798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 177 DGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 177 d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) ..++..|++++|+||.++++|++|+||+|-+-.. +.....+.|..++|++|+| T Consensus 228 ~~~~d~~~~~~G~ey~~~~~~~lr~gy~y~~~~~-------------~~~~~~~~~~~~lG~~y~f 280 (286) T 2f1c_X 228 REGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDH-------------DEGDSDKFHYAGVGVNYSF 280 (286) T ss_dssp ----CCEEEEEEEEEECSSSEEEEEEEEEEECC-------------------CCEEEEEEEEEEEE T ss_pred ECCCCCEEEEEEEEEEECCCEEEEEEEEEEECCC-------------CCCCCCEEEEEEEEEEEEE T ss_conf 4057724999999634079669999999997255-------------4788857894788678998 No 9 >>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157} (A:) Probab=99.12 E-value=2.6e-08 Score=63.71 Aligned_cols=168 Identities=13% Similarity=0.117 Sum_probs=103.1 Q ss_pred EEEEEEEEEEEEEEEEECCCCCCCCCCCCCC--CCEEEEEEEEEEEEC-CEEEEEEEEEEEECCCC-------CCCCCCC Q ss_conf 0057444644103322214555666667667--550479988655445-77999998867404777-------6432310 Q gi|254781078|r 55 SGNYVGLHISRLYETHPLADTINRKTYNSLL--PNGLGIELGHNIQLE-DFVFGINCHTTAAKDDS-------TFYRLKE 124 (242) Q Consensus 55 tG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~--~~g~G~~~GYN~Q~~-~~V~GvE~d~~~~~~~~-------~~~~~~~ 124 (242) .++|+-+.+++++.+.+...........+.. ..++.+.+||.+.++ .|.+-..+.+.+..... ....++. T Consensus 92 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~l~P~~~l~y~~~~~~~~~e~~~~~~l~~ 171 (285) T 2qom_A 92 SGAYIDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQGMHLSM 171 (285) T ss_dssp TSEEEEEEEEEEEEEEEEEC---CCCCEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEEEEEEEEC--------CCC T ss_pred CCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCCCEE T ss_conf 65030044677886330143026643222233218874672167980367178678999999996477323577433133 Q ss_pred CCE----EEEEEEEEEEEEEC----CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC Q ss_conf 100----36798999863314----4034444011457530110002366665555434556530379873166732787 Q gi|254781078|r 125 KYF----IYGDVVLKAGYSVD----SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYD 196 (242) Q Consensus 125 k~~----~~Gsvr~r~Gya~~----~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~n 196 (242) +.. +.+.+-.|+.+.+. .+.||+..++.+... ........ .........+..+..+.+++|+++.++++ T Consensus 172 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 248 (285) T 2qom_A 172 KDKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLL--ANGETVLR-DASGEKRIKGEKDSRMLMSVGLNAEIRDN 248 (285) T ss_dssp EEEEEEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEE--ETCTTBCC-CSSSSCCSSSSEEEEEEEEEEEEEEETTT T ss_pred CCCCEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEECC--CCCEEEEE-CCCCCEEECCCCCCEEEEEEEEEEEECCC T ss_conf 0464006888754353011306880799999999997217--88528971-34541350368886799999899998999 Q ss_pred EEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 6888898887448730003666666442201234138999886209 Q gi|254781078|r 197 ISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 197 wslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) |++.++|.+.-- +.+...+.+++||+|+| T Consensus 249 ~~~~~~~~~~~~-----------------~~~~~~~~~~lgl~y~F 277 (285) T 2qom_A 249 VRFGLEFEKSAF-----------------GKYNVDNAVNANFRYSF 277 (285) T ss_dssp EEECEEEEEEES-----------------SSSEEEEEEEECCEEEE T ss_pred EEEEEEEEEEEC-----------------CCCCEEEEEEEEEEEEE T ss_conf 999999999975-----------------88844079999999998 No 10 >>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell outer membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa} (X:322-632) Probab=98.75 E-value=4e-06 Score=51.78 Aligned_cols=138 Identities=13% Similarity=0.129 Sum_probs=83.7 Q ss_pred CEEEEEEEEEEEE---CCEEEEEEEEEEEECC--CC------CCCCCCCCCEEEEEEEEEEEEEE----C-CEEEEEEEE Q ss_conf 5047998865544---5779999988674047--77------64323101003679899986331----4-403444401 Q gi|254781078|r 87 NGLGIELGHNIQL---EDFVFGINCHTTAAKD--DS------TFYRLKEKYFIYGDVVLKAGYSV----D-SLLIYGMGG 150 (242) Q Consensus 87 ~g~G~~~GYN~Q~---~~~V~GvE~d~~~~~~--~~------~~~~~~~k~~~~Gsvr~r~Gya~----~-~~l~Y~~gG 150 (242) -++.+++||++.+ ++|.+--.+.+.+... +. ....++.......++.+++|..+ . .+.|++..+ T Consensus 155 ~~~~~~~g~~~~~~~~~~~~i~P~~~l~~~~~~~~~~~E~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 234 (311) T 3kvn_X 155 WAFSARLGYDIAQQADSPWHLSPFVSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQLFAEYA 234 (311) T ss_dssp EEEEEEEEECSCSCTTCSEEEEEEEEEEEEEEEECCCBCSSCCTTCEEECCEEEEEEEEEEEEEEEEESSSSEEEEEEEE T ss_pred EEEEEEECEEEECCCCCCEEEEEEEEEEEEEEECCCEEECCCCCCCEEECCCCCCEEEEEEEEEEEEECCCCEEEEEEEE T ss_conf 99999935675025668689999999999998537535417872006981664208999999999996188268999999 Q ss_pred EEEEEEECCCCC---CCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCC Q ss_conf 145753011000---23666655554345565303798731667327876888898887448730003666666442201 Q gi|254781078|r 151 FGGAYVIDSSLE---KVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDR 227 (242) Q Consensus 151 ~A~~~~~~~~~~---~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~ 227 (242) +...-....... ........-.....+..+.-..+++|+++.+.++|++.++|.+.- .. T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~------------------~~ 296 (311) T 3kvn_X 235 HEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGGYNWRK------------------GE 296 (311) T ss_dssp EEEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEEEEEEEEEEETTEEEEEEEEEEE------------------ET T ss_pred EEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEEEECCCEEEEEEEEEEE------------------CC T ss_conf 982205897317999973788537884455788689999999999889889999999998------------------88 Q ss_pred CCCEEEEEEEEEEEC Q ss_conf 234138999886209 Q gi|254781078|r 228 KGNAHIASLGINMHF 242 (242) Q Consensus 228 ~~~~h~v~~GinY~F 242 (242) +.+.|.+.+|++|+| T Consensus 297 ~~~~~~~~~g~~~~F 311 (311) T 3kvn_X 297 DDTQQSVSLALSLDF 311 (311) T ss_dssp TEEEEEEEEEEEEEC T ss_pred CCEEEEEEEEEEEEC T ss_conf 968999999999989 No 11 >>1i78_A Protease VII; integral outer membrane protein, beta barrel, hydrolase; HET: BOG; 2.60A {Escherichia coli K12} (A:) Probab=98.36 E-value=4.4e-05 Score=46.06 Aligned_cols=151 Identities=11% Similarity=0.091 Sum_probs=81.1 Q ss_pred EEEEEEEEEEC-CEEEEEEEEEEEECC--------------C---C-------CCCCCCCCCEEEEE-EEEEEEEEECCE Q ss_conf 79988655445-779999988674047--------------7---7-------64323101003679-899986331440 Q gi|254781078|r 90 GIELGHNIQLE-DFVFGINCHTTAAKD--------------D---S-------TFYRLKEKYFIYGD-VVLKAGYSVDSL 143 (242) Q Consensus 90 G~~~GYN~Q~~-~~V~GvE~d~~~~~~--------------~---~-------~~~~~~~k~~~~Gs-vr~r~Gya~~~~ 143 (242) -+.+||++..+ +.-+|+-+-+++... . . ..-.++.++.|.+- +-...-|.++++ T Consensus 113 dl~~g~~fl~~~~~klg~~~Gy~y~~~~~~a~Gg~~~y~~~~~~~~~~g~~p~~~~~i~Y~q~w~~p~iGl~g~y~~~~~ 192 (297) T 1i78_A 113 DLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDIGSFPNGERAIGYKQRFKMPYIGLTGSYRYEDF 192 (297) T ss_dssp EEEEEEEEEECSSEEEEEEEEEEEEEEEEEEECCEEEBCCTTCSSCBCCBCCTTCSEEEEEEEEEEEEEEEEEEEEETTE T ss_pred CCCCEEEEECCCCCHHHHHHCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEECCCCCEEEEEE T ss_conf 52120466158852212220311011468734741686143232011156888421213243136733312242253300 Q ss_pred EEEEEEEE-EEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCE-----EECCC Q ss_conf 34444011-4575301100023666655554345565303798731667327876888898887448730-----00366 Q gi|254781078|r 144 LIYGMGGF-GGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHS-----VNNSN 217 (242) Q Consensus 144 l~Y~~gG~-A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~-----~~~~~ 217 (242) -+.+..=+ .|.+.+....-..-. ......+..+...++-+.+-+.|.+||+|++.+|-+|..+-... ++... T Consensus 193 ~l~~~~~ys~~v~~~~~D~H~lR~--~~~~~~~~~~~~~g~~l~~~~~Y~vt~~~si~v~g~y~~~~~~~g~t~~~~~~~ 270 (297) T 1i78_A 193 ELGGTFKYSGWVESSDNDEHYDPK--GRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNN 270 (297) T ss_dssp EEEEEEEEEEEEEEEEEEEEECSS--SCEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEETTT T ss_pred ECCCEEEEEEEEECCCCCCCCCCC--CCEEEEEECCCCCEEEEEECCCEEECCCCEEEEEEHHHHHCCCCCCCEEECCCC T ss_conf 316357641135637774345887--626763011457437899606568768844998401232003678722031679 Q ss_pred CCCCC--CCCCCCCCEEEEEEEEEEEC Q ss_conf 66664--42201234138999886209 Q gi|254781078|r 218 AKSDV--ERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 218 ~~~~~--~~~~~~~~~h~v~~GinY~F 242 (242) +.... ...-.+....++++||-|+| T Consensus 271 g~~~~~~~~ag~~~~~~~~s~Gl~y~F 297 (297) T 1i78_A 271 NTSDYSKNGAGIENYNFITTAGLKYTF 297 (297) T ss_dssp TEEEEEEEEEEEEEEEEEEEEEEEEEC T ss_pred CCCCCCCCCCCCCCCCEEEECCEEECC T ss_conf 832013477763222416621312229 No 12 >>2vdf_A OPCA, outer membrane protein; invasin, adhesin, beta barrel; 1.95A {Neisseria meningitidis} (A:) Probab=97.69 E-value=0.0025 Score=36.50 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=9.1 Q ss_pred CCCCCCEEEEEEEEEEEC Q ss_conf 201234138999886209 Q gi|254781078|r 225 VDRKGNAHIASLGINMHF 242 (242) Q Consensus 225 ~~~~~~~h~v~~GinY~F 242 (242) ++.+...|..=+.|.|+| T Consensus 236 ~ep~n~~~~yGv~~~~~F 253 (253) T 2vdf_A 236 TIPKTSIREYGLRVGIKF 253 (253) T ss_dssp CCCCEEEEEEEEEEEEEC T ss_pred ECCCCCCEEEEEEEEEEC T ss_conf 658875225327888759 No 13 >>2j1n_A Outer membrane protein C; beta-barrel, ION transport, non-specific porin, general porin, osmoporin, transmembrane transport; HET: D12; 2.0A {Escherichia coli} PDB: 2j4u_P 2zle_D 2ixx_A* 2ixw_A* 1osm_A* (A:) Probab=97.52 E-value=0.0044 Score=35.12 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=38.9 Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 3798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) --.+..|++|.++++..+.+||.|++....+... .....+...+.+||.|+| T Consensus 295 ~~~~~~g~~Y~~sk~~~~y~~~~~~~~~~~~~~~---------~~~~~~~~~~~vGlr~~F 346 (346) T 2j1n_A 295 LKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTR---------DAGINTDNIVALGLVYQF 346 (346) T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEECCCCCHHHH---------HHTCCCSCEEEEEEEEEC T ss_pred EEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCC---------CCCCCCCCEEEEEEEEEC T ss_conf 6999999999816998999999985356642233---------467766778999999989 No 14 >>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} (A:) Probab=97.44 E-value=0.0056 Score=34.55 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=36.1 Q ss_pred EEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 03798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 181 SSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 181 ~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) .-..+..|++|.++++.++-+||.|.+. +.+...+.+||.|+| T Consensus 259 ~~~~~~~g~~Y~lsk~~~~y~~~~~~~~-------------------~~~~~~~~vG~r~~F 301 (301) T 2por_A 259 DVTYYGLGASYDLGGGASIVGGIADNDL-------------------PNSDMVADLGVKFKF 301 (301) T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEECS-------------------SSCCCEEEEEEEEEC T ss_pred CEEEEEEEEEEECCCCEEEEEEEEEEEC-------------------CCCCEEEEEEEEEEC T ss_conf 6269999999988999799999999966-------------------899737999869989 No 15 >>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} (X:) Probab=97.39 E-value=0.0064 Score=34.24 Aligned_cols=79 Identities=10% Similarity=-0.011 Sum_probs=42.5 Q ss_pred EEEEEEEEEEEEC---CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC--EEEEEEE Q ss_conf 6798999863314---4034444011457530110002366665555434556530379873166732787--6888898 Q gi|254781078|r 129 YGDVVLKAGYSVD---SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYD--ISLSASY 203 (242) Q Consensus 129 ~Gsvr~r~Gya~~---~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~n--wslraEY 203 (242) .-.+..++||.+. ++.+--..|+.|.+++......... .........+.......+|.-+++.+..+ +.++++| T Consensus 154 ~~~~~~~~gy~~~~~~~~~l~P~~~l~~~~~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 232 (308) T 1uyn_X 154 LMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGS-ALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGV 232 (308) T ss_dssp EEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESC-TTCCEECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEE T ss_pred EEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECC-CEEEEECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEE T ss_conf 79999999899982696599999875777862455075077-41688625650266687689997521551679899899 Q ss_pred EEEEC Q ss_conf 88744 Q gi|254781078|r 204 RYIPH 208 (242) Q Consensus 204 ~Y~d~ 208 (242) ++.-. T Consensus 233 ~~~~~ 237 (308) T 1uyn_X 233 ERDLN 237 (308) T ss_dssp EEESS T ss_pred EEECC T ss_conf 99706 No 16 >>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell outer membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa} (X:322-632) Probab=97.21 E-value=0.011 Score=33.04 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=54.1 Q ss_pred EEEEEEEEEE-----CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEE Q ss_conf 9899986331-----44034444011457530110002366665555434556530379873166732787688889888 Q gi|254781078|r 131 DVVLKAGYSV-----DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRY 205 (242) Q Consensus 131 svr~r~Gya~-----~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y 205 (242) .+..++||.+ +++.+.-.+++.|.+++.+...............+.+.......+|.-+++.+...+...++..| T Consensus 156 ~~~~~~g~~~~~~~~~~~~i~P~~~l~~~~~~~~~~~E~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 235 (311) T 3kvn_X 156 AFSARLGYDIAQQADSPWHLSPFVSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQLFAEYAH 235 (311) T ss_dssp EEEEEEEECSCSCTTCSEEEEEEEEEEEEEEEECCCBCSSCCTTCEEECCEEEEEEEEEEEEEEEEESSSSEEEEEEEEE T ss_pred EEEEEECEEEECCCCCCEEEEEEEEEEEEEEECCCEEECCCCCCCEEECCCCCCEEEEEEEEEEEEECCCCEEEEEEEEE T ss_conf 99999356750256686899999999999985375354178720069816642089999999999961882689999999 Q ss_pred EE--CCCCE-EE--C---CCCCCCCCCCCCCCCEEEEEEEEEEE Q ss_conf 74--48730-00--3---66666644220123413899988620 Q gi|254781078|r 206 IP--HHIHS-VN--N---SNAKSDVERVDRKGNAHIASLGINMH 241 (242) Q Consensus 206 ~d--~g~~~-~~--~---~~~~~~~~~~~~~~~~h~v~~GinY~ 241 (242) .. .++.. .. . ++....+...+.+.+.-.+.+|+++. T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 279 (311) T 3kvn_X 236 EREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQK 279 (311) T ss_dssp EEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEEEEEEEEE T ss_pred EEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEEE T ss_conf 82205897317999973788537884455788689999999999 No 17 >>3prn_A Porin; integral membrane protein, pore eyelet mutant; HET: C8E; 1.90A {Rhodopseudomonas blastica} (A:) Probab=97.10 E-value=0.014 Score=32.45 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=32.4 Q ss_pred EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 98731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) .+.+|+||.+++++.+-+||.|.+. +-..+.+||.|+| T Consensus 252 ~~~~g~~Y~l~k~~~~yae~~~~~~---------------------~~~~~~vG~r~~F 289 (289) T 3prn_A 252 AYGIGADYQFAEGVKVSGSVQSGFA---------------------NETVADVGVRFDF 289 (289) T ss_dssp EEEEEEEEEEETTEEEEEEEEECTT---------------------CCEEEEEEEEEEC T ss_pred EEEEEEEEECCCCEEEEEEEEEEEC---------------------CCCEEEEEEEEEC T ss_conf 8999999984898599999999708---------------------9825705757769 No 18 >>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} (A:) Probab=96.96 E-value=0.018 Score=31.71 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=38.3 Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 3798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) -..+.+|++|.+++++++.+||.|.+...... ..+.+...+.+|+.|+| T Consensus 282 ~~~~~~g~~Y~~sk~~~~ya~~~~~~~~~~~~------------~~~~~~~~~~vG~r~~F 330 (330) T 1pho_A 282 VNYIDVGATYYFNKNMSAFVDYKINQLDSDNK------------LNINNDDIVAVGMTYQF 330 (330) T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEECCCSSCT------------TCCCCCCEEEEEEEEEC T ss_pred EEEEEEEEEEEECCCEEEEEEEEEEECCCCCC------------CCCCCCCEEEEEEEEEC T ss_conf 59999999999079989999999982247766------------77666889999999989 No 19 >>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae} (A:) Probab=96.87 E-value=0.0086 Score=33.52 Aligned_cols=133 Identities=8% Similarity=-0.054 Sum_probs=56.1 Q ss_pred HHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCC----CCCEEEEEEEEEEEEEEEEEE---EC-------CCCCCCCC Q ss_conf 98743652023433202543457532110330376----653000057444644103322---21-------45556666 Q gi|254781078|r 15 LSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDD----EYGIWSGNYVGLHISRLYETH---PL-------ADTINRKT 80 (242) Q Consensus 15 ~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~----~~~~WtG~YiG~~~G~~~~~~---~~-------~d~~~~~~ 80 (242) +++++...+++.+.+.-.-.+...+......-.++ ....=+++.+|+.+|+-+... ++ .+...... T Consensus 6 ~~~~~~a~~~~~~~yig~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gY~~~~~~~ve~~~~~~~~~~~~~~~~ 85 (216) T 2k0l_A 6 AIFVLNAAPKDNTWYAGGKLGWSQYHDTGFYGNGFQNNNGPTRNDQLGAGAFGGYQVNPYLGFEMGYDWLGRMAYKGSVD 85 (216) T ss_dssp SSCCSSSCSCCCCEEEEEEEECSCCCCSCCCCCSCCCSCCCSCCCCCEEEEEEEEEEETTEEEEEEEEECCCCCCCCSSC T ss_pred HHHHHCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCC T ss_conf 43655077877989999998218860664325665456641037866899999978514443486146504201222245 Q ss_pred CCCCCCCEEEEEEEEEEEEC-CEEE--EEEEEEEEECCCCCC-----CCCCCCCEEEEEEEEEEEEEEC-CEEEEE Q ss_conf 67667550479988655445-7799--999886740477764-----3231010036798999863314-403444 Q gi|254781078|r 81 YNSLLPNGLGIELGHNIQLE-DFVF--GINCHTTAAKDDSTF-----YRLKEKYFIYGDVVLKAGYSVD-SLLIYG 147 (242) Q Consensus 81 ~n~~~~~g~G~~~GYN~Q~~-~~V~--GvE~d~~~~~~~~~~-----~~~~~k~~~~Gsvr~r~Gya~~-~~l~Y~ 147 (242) .....-..+.+.++|.+.+. .+-+ ++-..+...+.+... .....+..+...+-+-+.|.+. ++.+.+ T Consensus 86 ~~~~~~~~~~~~~~y~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y~l~~~~~l~~ 161 (216) T 2k0l_A 86 NGAFKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYASTGVSRSEHDTGVSPVFAGGVEWAVTRDIATRL 161 (216) T ss_dssp CCSSCCCEEEEEEEEEEESSSSEEEEEEEEEEEEECCCCCSCCCSSSCCCCCCEEEEEEEEEEEEEECSSSCEEEE T ss_pred CCCEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCEECCEEEEEECCCEEEEE T ss_conf 7626888788999999862024117777447898601112014576321134563031351237998369979999 No 20 >>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157} (A:) Probab=96.76 E-value=0.027 Score=30.80 Aligned_cols=112 Identities=12% Similarity=0.002 Sum_probs=63.2 Q ss_pred EEEEEEEEEEEE--C-CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC-----CEEEE Q ss_conf 679899986331--4-403444401145753011000236666555543455653037987316673278-----76888 Q gi|254781078|r 129 YGDVVLKAGYSV--D-SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNY-----DISLS 200 (242) Q Consensus 129 ~Gsvr~r~Gya~--~-~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~-----nwslr 200 (242) .-.+..++||.+ + .+.+--.+++.|.+++.+........ ........+....-..+|+-+++.+.. .+.++ T Consensus 125 ~~~~~~~~gy~~~~~~~~~l~P~~~l~y~~~~~~~~~e~~~~-~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 203 (285) T 2qom_A 125 SWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQG-MHLSMKDKDYNPLIGRTGVDVGKSFSGKDWKVTARAG 203 (285) T ss_dssp EEEEEEEEEECEESSSSEEEEEEEEEEEEEEEEEEC---------CCCEEEEEEEEEEEEEEEEEEEEECSSEEEEEEEE T ss_pred EEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCC-CCCEECCCCEEEEEEEEEEEEEEEEECCCEEEEEEEE T ss_conf 188746721679803671786789999999964773235774-3313304640068887543530113068807999999 Q ss_pred EEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEE Q ss_conf 89888744873000366666644220123413899988620 Q gi|254781078|r 201 ASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMH 241 (242) Q Consensus 201 aEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~ 241 (242) +.|++..-++..+...+........+.+.+.-.+.+|+++. T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 244 (285) T 2qom_A 204 LGYQFDLLANGETVLRDASGEKRIKGEKDSRMLMSVGLNAE 244 (285) T ss_dssp EEEEEEEEETCTTBCCCSSSSCCSSSSEEEEEEEEEEEEEE T ss_pred EEEEEECCCCCEEEEECCCCCEEECCCCCCEEEEEEEEEEE T ss_conf 99997217885289713454135036888679999989999 No 21 >>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} (A:) Probab=96.63 E-value=0.018 Score=31.82 Aligned_cols=10 Identities=0% Similarity=-0.004 Sum_probs=4.5 Q ss_pred EEEEEEEEEE Q ss_conf 7998865544 Q gi|254781078|r 90 GIELGHNIQL 99 (242) Q Consensus 90 G~~~GYN~Q~ 99 (242) .+-..|.+.. T Consensus 78 ~~~~~~~~~~ 87 (171) T 1qjp_A 78 QLTAKLGYPI 87 (171) T ss_dssp EEEEEEEEES T ss_pred EEEEEEEECC T ss_conf 9999999814 No 22 >>2jmm_A Outer membrane protein A; NMR {Escherichia coli} (A:) Probab=95.98 E-value=0.053 Score=29.22 Aligned_cols=92 Identities=9% Similarity=-0.105 Sum_probs=35.0 Q ss_pred EEEEEEEEEEEEEEE---EECCCCCCCCCCCCCCCCEEEEEEEEEEEEC-CEEEEEEEEEEEECCC--CCC---CCCCCC Q ss_conf 005744464410332---2214555666667667550479988655445-7799999886740477--764---323101 Q gi|254781078|r 55 SGNYVGLHISRLYET---HPLADTINRKTYNSLLPNGLGIELGHNIQLE-DFVFGINCHTTAAKDD--STF---YRLKEK 125 (242) Q Consensus 55 tG~YiG~~~G~~~~~---~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~-~~V~GvE~d~~~~~~~--~~~---~~~~~k 125 (242) ++.-.|+.+|+-+.. .+..-........+.....+.+.+.|++... +|-.=+.+-+.+...+ ... .....+ T Consensus 22 ~~~~~g~~~gy~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~ 101 (156) T 2jmm_A 22 NQLGAGAFGGYQVNPYVGFEMGYDWLGRMPRKAQGVQLTAKLGYPKLGTDDLDIYTRLGGMVWRADTSDKDGNGYISAAE 101 (156) T ss_dssp SCCEEEEEEEEECSSSEEEEEEEEEECSSSSCEEEEEEEEEEEECTTCTTTCEEEEEEEEEEESSBCCCCCSSSCCCCCB T ss_pred CCCEEEEEEEEEECCCEEEEEEEEECCCCCEEEECCEEEEEEEEEECCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCC T ss_conf 98587899988707878999978834666415423215467899970368542989831469983443203677433366 Q ss_pred CEEEEEEEEEEEEEEC-CEEEE Q ss_conf 0036798999863314-40344 Q gi|254781078|r 126 YFIYGDVVLKAGYSVD-SLLIY 146 (242) Q Consensus 126 ~~~~Gsvr~r~Gya~~-~~l~Y 146 (242) ..+-..+-+-+-|.+. ++.+. T Consensus 102 ~~~~~~~g~G~~y~l~~~~~l~ 123 (156) T 2jmm_A 102 ASVSPVFAGGVEYVIRRRITPE 123 (156) T ss_dssp CCCCEEEEEEEEEECSSSCSSS T ss_pred CCCCEEEEEEEEEEECCCCCCC T ss_conf 7628779989999864264734 No 23 >>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} (A:) Probab=95.75 E-value=0.1 Score=27.65 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=37.7 Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 3798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) -..+..|++|.++++..+-+||.|.+...... ..+.+...+.+||.|+| T Consensus 292 ~~~~~vg~~Y~lsk~~~~y~~~~~~~~~~~~~------------~~~~~~~~~~~G~r~~F 340 (340) T 2zfg_A 292 VNYFEVGATYYFNKNMSTYVDYIINQIDSDNK------------LGVGSDDTVAVGIVYQF 340 (340) T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECCCTTCT------------TCCCCBCEEEEEEEEEC T ss_pred EEEEEEEEEEEECCCEEEEEEEEEECCCCCCC------------CCCCCCCEEEEEEEEEC T ss_conf 38999999999169989999999952357766------------77766879999999989 No 24 >>2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A (A:) Probab=95.50 E-value=0.069 Score=28.58 Aligned_cols=30 Identities=10% Similarity=-0.094 Sum_probs=16.7 Q ss_pred CCCCEEEEEEEEEEEEEEC-CEEEEEEEEEE Q ss_conf 1010036798999863314-40344440114 Q gi|254781078|r 123 KEKYFIYGDVVLKAGYSVD-SLLIYGMGGFG 152 (242) Q Consensus 123 ~~k~~~~Gsvr~r~Gya~~-~~l~Y~~gG~A 152 (242) ..+..+...+.+-+.|.+. ++.+.+.--+. T Consensus 127 ~~~~~~~~~~g~G~~y~l~~~~~l~~eyry~ 157 (197) T 2f1v_A 127 SLKDSWGAAGQVGVDYLINRDWLVNMSVWYM 157 (197) T ss_dssp EECCEEEEEEEEEEEEECSSSEEEEEEEEEE T ss_pred CCCCCEEEEEECCEEEECCCCEEEEEEEEEE T ss_conf 4566383899734899907983999999999 No 25 >>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein; HET: BOG; 1.45A {Delftia acidovorans} (X:) Probab=94.83 E-value=0.21 Score=25.98 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=45.4 Q ss_pred EEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCC-CCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 037987316673278768888988874487300036666-66442201234138999886209 Q gi|254781078|r 181 SSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAK-SDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 181 ~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~-~~~~~~~~~~~~h~v~~GinY~F 242 (242) ..+.+-+|++|.++++..+.+||.|.+............ ..........+...+.+||.|+| T Consensus 270 ~~~~~~~g~~y~l~k~~~~ya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Glr~~F 332 (332) T 2fgq_X 270 KAHQITLGYVHNLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF 332 (332) T ss_dssp EEEEEEEEEEEESSSSEEEEEEEEEEEECTTCCCCCCBTTTBCSCCCTTCEEEEEEEEEEEEC T ss_pred CCEEEEEEEEEECCCCCHHHHEEHHEECCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEC T ss_conf 725999999996466718733024121258774210111002478789987699999999989 No 26 >>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii} (A:) Probab=94.50 E-value=0.25 Score=25.53 Aligned_cols=59 Identities=8% Similarity=0.086 Sum_probs=32.2 Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 3798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) -+++.++++|.++++|++.+.++|+.-..... .+..........+.+...+.++++|+| T Consensus 377 ~~~~~~~~~y~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~y~F 435 (441) T 3bry_A 377 TTSLTGGVSYAIGKNDVIDFALSVALRKTLDN--ASQPNTAVPISVTHSQVNAVIAYQKRF 435 (441) T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECCBC---------------CEEEEEEEEEEEEEEEE T ss_pred CEEEEEEEEEEECCCEEEEEEEEEEECCCCCC--CCCCCCCCCEEEEEEEEEEEEEEEEEE T ss_conf 88999888898089879999999997421013--566777530477899998999999996 No 27 >>2o4v_A Porin P; outer membrane, phosphate, transport, channel, membrane protein; HET: C8E; 1.94A {Pseudomonas aeruginosa PAO1} (A:) Probab=94.44 E-value=0.26 Score=25.45 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=41.9 Q ss_pred CCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 65303798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 178 GHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 178 ~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) ....+..+-+|+.|.+++|+.+++||.+.+....... ....+.+.+++.+.|+| T Consensus 358 ~~~~~~~~~~g~~~~~~~n~~l~~~y~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~F 411 (411) T 2o4v_A 358 GDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKISNA-----------NGDDSGDGLVMRLQYVF 411 (411) T ss_dssp SCEEEEEEEEEEEEECSSSEEEEEEEEEEEEESBCCT-----------TCCCEEEEEEEEEEEEC T ss_pred CCCEEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC-----------CCCCCCCEEEEEEEEEC T ss_conf 7760699999999998089999999999866656667-----------78886558999988889 No 28 >>2erv_A Hypothetical protein PAER03002360; beta barrel, outer membrane, enzyme, hydrolase, lipopolysaccharide, membrane protein; HET: CXE; 2.00A {Pseudomonas aeruginosa} (A:) Probab=93.88 E-value=0.34 Score=24.80 Aligned_cols=126 Identities=10% Similarity=-0.027 Sum_probs=74.1 Q ss_pred EEEEEEEEEE---CCEEEEEEEEEEEE--CCCCCCCCCCCCCEEEEEEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCC Q ss_conf 7998865544---57799999886740--477764323101003679899986331440344440114575301100023 Q gi|254781078|r 90 GIELGHNIQL---EDFVFGINCHTTAA--KDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKV 164 (242) Q Consensus 90 G~~~GYN~Q~---~~~V~GvE~d~~~~--~~~~~~~~~~~k~~~~Gsvr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~ 164 (242) +.+.++++.. +.+-+-.+.++..+ ..+...... ...--+...|..+...+.=+|+.+|++.+........ T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~e~g~G~~~~~~~~~~-- 94 (150) T 2erv_A 20 GLSWDWDKSWWQTSTGRLTGYWDAGYTYWEGGDEGAGK---HSLSFAPVFVYEFAGDSIKPFIEAGIGVAAFSGTRVG-- 94 (150) T ss_dssp EEEEECCCCEEEETTEEEEEEEEEEEEEECCCSSCSSE---EEEEEEEEEEEEECCSSEEEEEEEEEEEEEESSSEET-- T ss_pred EEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCC---EEEEEEEEEEEEECCCCCCEEEEEEECEEEEECCCCC-- T ss_conf 97907980120279853889987888883069966862---0785678999994699836799941044987042027-- Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEE Q ss_conf 6666555543455653037987316673278768888988874487300036666664422012341389998862 Q gi|254781078|r 165 ESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINM 240 (242) Q Consensus 165 ~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY 240 (242) .+.=.++.=+...+|+.|.++++|.+.+-|+++-. + ++..-....|.+.+++|++| T Consensus 95 ---------~~~~G~~f~F~~~lglgy~~~~~~~lgl~~~H~SN---------a--~~~~~NpG~n~~~l~~g~~f 150 (150) T 2erv_A 95 ---------DQNLGSSLNFEDRIGAGLKFANGQSVGVRAIHYSN---------A--GLKQPNDGIESYSLFYKIPI 150 (150) T ss_dssp ---------TEECSCSEEEEEEEEEEEEETTSCEEEEEEEEEEC---------T--TSSTTCCCEEEEEEEEEEEC T ss_pred ---------CCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEC---------C--CCCCCCCCCCEEEEEEECCC T ss_conf ---------98767549873427889996799889999998505---------8--98989999206889996659 No 29 >>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa} (X:) Probab=93.73 E-value=0.36 Score=24.65 Aligned_cols=54 Identities=26% Similarity=0.364 Sum_probs=29.1 Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 3798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) -+.+-++++|.++++|++++.|.|++--...-..... -.....|++.++++|+| T Consensus 336 ~~g~el~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-------~~~~~~~~~~l~~~y~~ 389 (451) T 3dwo_X 336 TWTLAVGGDYKVTDQWTMRAGVAYDQTPTHNATRDPR-------IPDGDRYFASLGAGYRF 389 (451) T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEECCSCCTTTCCSS-------SCCCCEEEEEEEEEEEC T ss_pred CEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCC-------CCCCCCEEEEEEEEEEE T ss_conf 1258888999948978999999966678785431531-------00578779998899997 No 30 >>3dwn_A Long-chain fatty acid transport protein; beta barrel, outer membrane protein, lipid transport, membrane, outer membrane, phage recognition; HET: LDA; 2.50A {Escherichia coli} PDB: 1t16_A* 1t1l_A* 2r4p_A* 2r4n_A* 2r4l_A* 2r4o_A* 2r89_A 2r8a_A* 2r88_A (A:) Probab=93.38 E-value=0.41 Score=24.31 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=11.6 Q ss_pred EEEEEEEEECCCCEEEEEEEEEE Q ss_conf 98731667327876888898887 Q gi|254781078|r 184 VLGIGLDYMVNYDISLSASYRYI 206 (242) Q Consensus 184 tvGaGVEYait~nwslraEY~Y~ 206 (242) ++.+++.|.++++|++.+.-+-+ T Consensus 368 ~~dl~~~y~~~~~~~l~~~v~NL 390 (427) T 3dwn_A 368 WLSAGTTYAFNKDASVDVGVSYM 390 (427) T ss_dssp EEEEEEEEESSSSEEEEEEEEEE T ss_pred EEEEEEEEECCCCEEEEEEEEEE T ss_conf 99987979838986999999999 No 31 >>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A* (A:) Probab=83.99 E-value=2.3 Score=20.19 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=40.5 Q ss_pred EEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 03798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 181 SSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 181 ~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) --+++.+++.|.+.++|++.+.++|..--.... .+....-.........+.+.+.++|.| T Consensus 374 p~~~~~~~~~y~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~ 433 (439) T 3bs0_A 374 LKRHVTFGGEYDFDKDSRINLAISFGLRERVQT--PSYLAGTEMLRQSHSQINAVVSYSKNF 433 (439) T ss_dssp CSEEEEEEEEEESSSSEEEEEEEEEEEEEEEEC--------CCCCEEEEEEEEEEEEEEEEE T ss_pred CCEEEEEEEEEEECCCEEEEEEEEEECCCCCCC--CCCCCCCCCEEEEEEEEEEEEEEEEEE T ss_conf 888999879998089859999999970431013--677777553145667899999999896 No 32 >>2wjr_A Probable N-acetylneuraminic acid outer membrane channel protein NANC; cell membrane, ION transport, transmembrane, porin, transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A* (A:) Probab=81.09 E-value=3.1 Score=19.56 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=35.8 Q ss_pred CCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 565303798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 177 DGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 177 d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) +....-|..-.=+.|.+.++|.--+|+.+++-...+- -..+...-..||||.|.| T Consensus 160 ~~k~~~~e~n~~~~Yk~~~~w~PYvE~g~v~~~~~~~-----------~~~~~~q~r~RvGv~Y~F 214 (214) T 2wjr_A 160 NHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYN-----------GRDNLSENSYRIGVSFKL 214 (214) T ss_dssp TSSSEEEEEEEEEEECSSSSEEEEEEEEECCSCEEET-----------TEEEECCEEEEEEEEECC T ss_pred CCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCC-----------CCCCCCCCEEEEEEEEEC T ss_conf 8877416899999998589732369999841552017-----------764542426999989759 No 33 >>2guf_A Vitamin B12 transporter BTUB; beta barrel, cubic mesophase, cobalamin, colicin, transport protein; HET: MPG; 1.95A {Escherichia coli} (A:134-594) Probab=74.47 E-value=4.9 Score=18.46 Aligned_cols=50 Identities=8% Similarity=0.092 Sum_probs=25.5 Q ss_pred EEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 183 VVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 183 ~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) +++-+.+.|.++++|++.++-+=+- .+.+.. ....-..--++.+||+|+| T Consensus 412 ~~~dl~~~y~~~~~~~l~~~v~NL~--d~~y~~--------~~~~~~~gR~~~~~~~~~F 461 (461) T 2guf_A 412 SLWDLAVAYPVTSHLTVRGKIANLF--DKDYET--------VYGYQTAGREYTLSGSYTF 461 (461) T ss_dssp EEEEEEEEEESSSSEEEEEEEESTT--CCCC----------------CCCEEEEEEEEEC T ss_pred EEEEEEEEEEECCCEEEEEEEEECC--CCCEEE--------ECCCCCCCEEEEEEEEEEC T ss_conf 9999999999389879999999489--995130--------2685689979999999989 No 34 >>2qtk_A Probable porin; outer membrane protein, beta barrel, vanillate transport; HET: C8E; 2.80A {Pseudomonas aeruginosa} (A:) Probab=68.72 E-value=6.7 Score=17.71 Aligned_cols=18 Identities=6% Similarity=0.015 Sum_probs=12.1 Q ss_pred CCCCCCEEEEEEEEEEEC Q ss_conf 201234138999886209 Q gi|254781078|r 225 VDRKGNAHIASLGINMHF 242 (242) Q Consensus 225 ~~~~~~~h~v~~GinY~F 242 (242) .+.+.+...+|+=|.|+| T Consensus 371 ~~~~~d~~~~r~~~~Y~f 388 (390) T 2qtk_A 371 RSFNSDFDQTRLVVSYPL 388 (390) T ss_dssp ETTSCCEEEEEEEEEEEE T ss_pred CCCCCCCEEEEEEEEEEE T ss_conf 678898536999999771 No 35 >>3jty_A BENF-like porin; PFL_1329, benzoate transporter, efflux pump, structural genomics, PSI-2, protein structure initiative; HET: LDA; 2.58A {Pseudomonas fluorescens pf-5} (A:) Probab=61.31 E-value=9.3 Score=16.91 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=14.5 Q ss_pred EEEEEEEEEECCEEEEEEEEEEEECCC Q ss_conf 799886554457799999886740477 Q gi|254781078|r 90 GIELGHNIQLEDFVFGINCHTTAAKDD 116 (242) Q Consensus 90 G~~~GYN~Q~~~~V~GvE~d~~~~~~~ 116 (242) ++.+.|.+.++.+-+.+++.+.....+ T Consensus 212 ~~~~~y~~~~~~~~l~~~~~y~~~~~~ 238 (402) T 3jty_A 212 FINLIHSQPLGDWTLGANLGFFYGKED 238 (402) T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEC T ss_pred EEEEEEEEECCCCEEEEEEEEEEECCC T ss_conf 453567778387128884799996156 No 36 >>2odj_A Porin D; outer membrane protein, beta-barrel, amino acid transport; HET: C8E; 2.90A {Pseudomonas aeruginosa PAO1} (A:) Probab=58.64 E-value=10 Score=16.64 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=25.5 Q ss_pred CEEEEEEEEEEEECCC----CEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 3037987316673278----76888898887448730003666666442201234138999886209 Q gi|254781078|r 180 GSSVVLGIGLDYMVNY----DISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 180 ~~G~tvGaGVEYait~----nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) ..+.-+.+=+-|.+++ ++++++.|-+++-. ....+.+...+|+=++|+| T Consensus 365 ~~~~E~~~~~~Y~~~~g~~K~L~~~~~~~~~~~d--------------~~~~~~d~~~~rl~~~Y~F 417 (428) T 2odj_A 365 GKHHETNLEAKYVVQSGPAKDLSFRIRQAWHRAN--------------ADQGEGDQNEFRLIVDYPL 417 (428) T ss_dssp EEEEEEEEEEEEECCSSTTTTCEEEEEEEEEEEC--------------TTTSSCSBEEEEEEEEEEE T ss_pred CCEEEEEEEEEEEECCCCCCCCEEEEEEEEEECC--------------CCCCCCCCEEEEEEEEEEE T ss_conf 7415897899999788875783899999999546--------------7657898648999999390 No 37 >>3efm_A FAUA, ferric alcaligin siderophore receptor; membrane protein, membrane receptor, membrane transporter, membrane, TONB box; 2.33A {Bordetella pertussis} (A:158-707) Probab=51.94 E-value=14 Score=16.01 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=14.4 Q ss_pred EEEEEEEEEECCCCEEEEEEEE Q ss_conf 7987316673278768888988 Q gi|254781078|r 183 VVLGIGLDYMVNYDISLSASYR 204 (242) Q Consensus 183 ~tvGaGVEYait~nwslraEY~ 204 (242) +++-+.+.|.++++|++.+.-+ T Consensus 496 ~~~dl~~~y~~~~~~~l~~~v~ 517 (550) T 3efm_A 496 ALVSLMARFDFNKKLSATLNVN 517 (550) T ss_dssp EEEEEEEEEEEETTEEEEEEEE T ss_pred EEEEEEEEEEECCCEEEEEEEE T ss_conf 9999999999599989999999 No 38 >>2w16_A FPVA, ferripyoverdine receptor; FPVA, iron, membrane, TONB BOX, transport, siderophore, cell membrane; HET: N8E PVE FHO; 2.71A {Pseudomonas aeruginosa} PDB: 2o5p_A* 2iah_A* 2w6t_A* 2w6u_A* 2w75_A* 2w76_A* 2w77_A* 2w78_A* 1xkh_A* (A:109-772) Probab=34.84 E-value=26 Score=14.49 Aligned_cols=56 Identities=11% Similarity=0.072 Sum_probs=31.6 Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 3798731667327876888898887448730003666666442201234138999886209 Q gi|254781078|r 182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242) =+++-+.+.|.++++|++.++-+=+-- ++-....... ..-.-..--++.++|+|+| T Consensus 609 y~~~d~~~~y~~~~~~~l~~~v~Nl~d-~~y~~~~~~~----~~~~~~~gR~~~~~~~~~F 664 (664) T 2w16_A 609 YWLVDLMARYQITDKLSASVNVNNVFD-KTYYTNIGFY----TSASYGDPRNLMFSTRWDF 664 (664) T ss_dssp EEEEEEEEEEEEETTEEEEEEEESTTC-CCCEEEECTT----SEEEECCCSEEEEEEEEEC T ss_pred EEEEEEEEEEEECCCEEEEEEEEECCC-CHHHCCCCCC----CCCEECCCEEEEEEEEEEC T ss_conf 799998999996998899999995889-8040035545----6610579989999999989 No 39 >>3fid_A Putative outer membrane protein (LPXR); lipopolysaccharide-modifying outer membrane enzyme; HET: CXE; 1.90A {Salmonella typhimurium} (A:) Probab=24.93 E-value=39 Score=13.51 Aligned_cols=129 Identities=11% Similarity=0.029 Sum_probs=57.7 Q ss_pred EEEEEEECC-EEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCCC--CCC Q ss_conf 886554457-79999988674047776432310100367989998633144034444011457530110002366--665 Q gi|254781078|r 93 LGHNIQLED-FVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVES--DNS 169 (242) Q Consensus 93 ~GYN~Q~~~-~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~~~--~~~ 169 (242) -|++.|+.| +++-+..+....-. .....+.-+++..++-.++++.-|+..|+-+---+......... ... T Consensus 131 ~GWd~Qi~ne~~~~l~~e~~~~~~-------~~~~~~~~d~~~~~~~~lGn~~t~a~~G~~~R~G~~l~~~~~~~~~~~~ 203 (296) T 3fid_A 131 PAWQDQIENRYGYTAKGMVSLTPA-------IDILGVNVGFYPEVSAVGGNLFQYLGYGATVALGNDKTFNSDNGFGLLS 203 (296) T ss_dssp GGGGGCBCCEEEEEEEEEEEECCE-------EEETTEEEEEEEEEEEEEESSEEEEEEEEEEEEESCHHHHTCCCCGGGC T ss_pred CCHHHHCCCCCEEEEEEEEEECCC-------CCCCCCEEEEEEEEEEEECCEEEEEECCEEEEEECCCCCCCCCCCCCCC T ss_conf 741776676216887766750014-------5667865889888779823246754144599961366666556776546 Q ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCC-CCCCCCCCCEEEEEEEEEEEC Q ss_conf 5554345565303798731667327876888898887448730003666666-442201234138999886209 Q gi|254781078|r 170 KNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSD-VERVDRKGNAHIASLGINMHF 242 (242) Q Consensus 170 ~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~-~~~~~~~~~~h~v~~GinY~F 242 (242) ............+|-+=+ ++|.+|+.+.-. ++ .+...+ ...++.+.-...+++|+.+++ T Consensus 204 ~~~~~~~~~~~~~~~~f~------------g~~~~~v~~d~~-Ld-Gn~f~~s~~~v~~~~~v~~~~~G~~~~~ 263 (296) T 3fid_A 204 RRGLIHTQKEGLIYKVFA------------GVERREVDKNYT-LQ-GKTLQTKMETVDINKTVDEYRVGATIGY 263 (296) T ss_dssp CTTCCCCCCCSEEEEEEE------------EEEEEEEEEEHH-HH-SCBTTTCCCCCCBCSEEEEEEEEEEEEE T ss_pred CCCCCCCCCCCCEEEEEE------------EEEEEEEEEEEE-EE-CCCCCCCCCCCCCCEEEEEEEEEEEEEE T ss_conf 666565688872699999------------416999998779-73-7755788985200102689999999996 No 40 >>2hdi_A Colicin I receptor; outer membrane, iron transport, TONB BOX, signal transduction, colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli} PDB: 2hdf_A* (A:136-639) Probab=21.99 E-value=45 Score=13.18 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=4.7 Q ss_pred EEEEEEEEEC Q ss_conf 8999886209 Q gi|254781078|r 233 IASLGINMHF 242 (242) Q Consensus 233 ~v~~GinY~F 242 (242) ++.++|+|+| T Consensus 495 ~~~~~~~~~F 504 (504) T 2hdi_A 495 RYFMAVDYRF 504 (504) T ss_dssp EEEEEEEEEC T ss_pred EEEEEEEEEC T ss_conf 9999999989 Done!