HHsearch results for GI: 254781078 and protein with PDBid: 1uyn_X

>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=98.99  E-value=1.3e-07  Score=59.12  Aligned_cols=169  Identities=14%  Similarity=0.130  Sum_probs=95.4

Q ss_pred             EEEEEEEEEEEEEEEECCCCCC--CCCCCCCC--CCEEEEEEEEEEEE-CCEEEEEEEEEEEECC--CC-----CCCCCC
Q ss_conf             0574446441033222145556--66667667--55047998865544-5779999988674047--77-----643231
Q gi|254781078|r   56 GNYVGLHISRLYETHPLADTIN--RKTYNSLL--PNGLGIELGHNIQL-EDFVFGINCHTTAAKD--DS-----TFYRLK  123 (242)
Q Consensus        56 G~YiG~~~G~~~~~~~~~d~~~--~~~~n~~~--~~g~G~~~GYN~Q~-~~~V~GvE~d~~~~~~--~~-----~~~~~~  123 (242)
                      ++|+-+.+++++.+.++.-...  .....+..  ...+.+.+||+|.+ +++.+-..+.+.+...  +.     ....++
T Consensus       120 ~~~~~~~~~yg~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~l~P~~gl~y~~~~~~~f~E~g~~~~l~  199 (308)
T 1uyn_X          120 IGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWS  199 (308)
T ss_dssp             TEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCE
T ss_pred             CCEEEEEEEEEEEEEEEEEEECCCCCEEEEEECCEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECCCCEEE
T ss_conf             70058988799982179998447861255771116999999877788269638979999899997236604507740048


Q ss_pred             CCCEEEEEEEEEEEE----EEC-CEEEEEEEEEEEEEEECCC--CCCCCCCC-CCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf             010036798999863----314-4034444011457530110--00236666-555543455653037987316673278
Q gi|254781078|r  124 EKYFIYGDVVLKAGY----SVD-SLLIYGMGGFGGAYVIDSS--LEKVESDN-SKNAKGRFDGHGSSVVLGIGLDYMVNY  195 (242)
Q Consensus       124 ~k~~~~Gsvr~r~Gy----a~~-~~l~Y~~gG~A~~~~~~~~--~~~~~~~~-~~~~~~~~d~t~~G~tvGaGVEYait~  195 (242)
                      .+....-+++.++|.    .++ ++-|++..++...-.....  .......+ ........+..+.-+.+|+|+++.+++
T Consensus       200 ~~~~~~~~~~~~~Glr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~  279 (308)
T 1uyn_X          200 GNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGN  279 (308)
T ss_dssp             ECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEEEEET
T ss_pred             ECCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEEEECC
T ss_conf             71674016689999999985477168988878997527998517999964887515773257888459999839999879


Q ss_pred             CEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             76888898887448730003666666442201234138999886209
Q gi|254781078|r  196 DISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       196 nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +|++.++|.+.-                  ..+.+.|.+++||+|+|
T Consensus       280 ~~~~~~~y~~~~------------------~~~~~~~~~~~gl~y~F  308 (308)
T 1uyn_X          280 GWNGLARYSYAG------------------SKQYGNHSGRVGVGYRF  308 (308)
T ss_dssp             TEEEEEEEEEEE------------------ETTEEEEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEE------------------CCCCEEEEEEEEEEEEC
T ss_conf             999999999997------------------77850489999999989