HHsearch results for GI: 254781078 and protein with PDBid: 1uyn_X
>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=98.99 E-value=1.3e-07 Score=59.12 Aligned_cols=169 Identities=14% Similarity=0.130 Sum_probs=95.4
Q ss_pred EEEEEEEEEEEEEEEECCCCCC--CCCCCCCC--CCEEEEEEEEEEEE-CCEEEEEEEEEEEECC--CC-----CCCCCC
Q ss_conf 0574446441033222145556--66667667--55047998865544-5779999988674047--77-----643231
Q gi|254781078|r 56 GNYVGLHISRLYETHPLADTIN--RKTYNSLL--PNGLGIELGHNIQL-EDFVFGINCHTTAAKD--DS-----TFYRLK 123 (242)
Q Consensus 56 G~YiG~~~G~~~~~~~~~d~~~--~~~~n~~~--~~g~G~~~GYN~Q~-~~~V~GvE~d~~~~~~--~~-----~~~~~~ 123 (242)
++|+-+.+++++.+.++.-... .....+.. ...+.+.+||+|.+ +++.+-..+.+.+... +. ....++
T Consensus 120 ~~~~~~~~~yg~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~l~P~~gl~y~~~~~~~f~E~g~~~~l~ 199 (308)
T 1uyn_X 120 IGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWS 199 (308)
T ss_dssp TEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCE
T ss_pred CCEEEEEEEEEEEEEEEEEEECCCCCEEEEEECCEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECCCCEEE
T ss_conf 70058988799982179998447861255771116999999877788269638979999899997236604507740048
Q ss_pred CCCEEEEEEEEEEEE----EEC-CEEEEEEEEEEEEEEECCC--CCCCCCCC-CCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 010036798999863----314-4034444011457530110--00236666-555543455653037987316673278
Q gi|254781078|r 124 EKYFIYGDVVLKAGY----SVD-SLLIYGMGGFGGAYVIDSS--LEKVESDN-SKNAKGRFDGHGSSVVLGIGLDYMVNY 195 (242)
Q Consensus 124 ~k~~~~Gsvr~r~Gy----a~~-~~l~Y~~gG~A~~~~~~~~--~~~~~~~~-~~~~~~~~d~t~~G~tvGaGVEYait~ 195 (242)
.+....-+++.++|. .++ ++-|++..++...-..... .......+ ........+..+.-+.+|+|+++.+++
T Consensus 200 ~~~~~~~~~~~~~Glr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~ 279 (308)
T 1uyn_X 200 GNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGN 279 (308)
T ss_dssp ECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEEEEET
T ss_pred ECCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEEEECC
T ss_conf 71674016689999999985477168988878997527998517999964887515773257888459999839999879
Q ss_pred CEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 76888898887448730003666666442201234138999886209
Q gi|254781078|r 196 DISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 196 nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
+|++.++|.+.- ..+.+.|.+++||+|+|
T Consensus 280 ~~~~~~~y~~~~------------------~~~~~~~~~~~gl~y~F 308 (308)
T 1uyn_X 280 GWNGLARYSYAG------------------SKQYGNHSGRVGVGYRF 308 (308)
T ss_dssp TEEEEEEEEEEE------------------ETTEEEEEEEEEEEEEC
T ss_pred CEEEEEEEEEEE------------------CCCCEEEEEEEEEEEEC
T ss_conf 999999999997------------------77850489999999989