Query gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 242
No_of_seqs 152 out of 223
Neff 5.0
Searched_HMMs 23785
Date Wed Jun 1 00:59:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781078.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p4t_A Outer membrane protein 99.9 3.5E-22 1.5E-26 138.8 18.2 151 55-242 4-155 (155)
2 2k0l_A Outer membrane protein 99.9 2.2E-20 9.1E-25 129.0 19.1 171 54-242 16-192 (216)
3 1orm_A Outer membrane protein 99.9 4.9E-25 2.1E-29 154.4 -4.8 125 89-242 22-148 (148)
4 1qjp_A Outer membrane protein 99.8 1.7E-18 7.3E-23 118.6 18.8 161 56-242 6-170 (171)
5 2f1v_A Outer membrane protein 99.8 2.9E-19 1.2E-23 122.8 14.3 149 87-242 37-191 (197)
6 2jmm_A Outer membrane protein 99.7 3.5E-15 1.5E-19 100.5 17.0 145 55-242 5-150 (156)
7 1uyn_X NALP; autotransporter, 99.0 1.3E-07 5.4E-12 59.1 18.2 169 56-242 120-308 (308)
8 2x55_A Coagulase/fibrinolysin; 99.0 4.1E-08 1.7E-12 61.8 14.6 64 179-242 221-292 (293)
9 3aeh_A Hemoglobin-binding prot 99.0 1.5E-07 6.4E-12 58.7 17.4 179 46-242 109-306 (308)
10 2qom_A Serine protease ESPP; o 98.9 2.8E-07 1.2E-11 57.2 18.7 167 56-242 93-277 (285)
11 3kvn_X Esterase ESTA; beta bar 98.9 9.1E-07 3.8E-11 54.5 18.7 172 53-242 434-632 (632)
12 3dwo_X Probable outer membrane 98.4 4.5E-05 1.9E-09 45.2 17.1 65 178-242 376-443 (451)
13 3bs0_A TODX; beta barrel, oute 98.3 8.2E-05 3.5E-09 43.7 15.1 59 177-242 328-386 (439)
14 3dwn_A Long-chain fatty acid t 98.2 0.00019 7.9E-09 41.8 17.5 55 183-242 367-421 (427)
15 3dwo_X Probable outer membrane 98.2 0.00019 8E-09 41.7 18.0 146 86-242 209-389 (451)
16 3dwn_A Long-chain fatty acid t 98.1 0.00034 1.4E-08 40.4 17.5 61 175-242 317-377 (427)
17 3kvn_X Esterase ESTA; beta bar 97.6 0.0025 1.1E-07 35.6 18.3 74 130-205 476-556 (632)
18 2fgq_X OMP32, outer membrane p 97.5 0.0033 1.4E-07 35.0 16.5 61 182-242 271-332 (332)
19 1i78_A Protease VII; integral 97.4 0.0044 1.8E-07 34.3 17.2 64 179-242 227-297 (297)
20 3bry_A TBUX; beta barrel, oute 97.3 0.006 2.5E-07 33.5 19.5 59 177-242 330-388 (441)
21 1pho_A Phosphoporin; outer mem 97.3 0.0062 2.6E-07 33.5 17.7 48 183-242 283-330 (330)
22 3bs0_A TODX; beta barrel, oute 97.3 0.0064 2.7E-07 33.4 14.9 59 182-242 375-433 (439)
23 2j1n_A Outer membrane protein 97.2 0.0068 2.8E-07 33.3 19.2 50 184-242 297-346 (346)
24 3aeh_A Hemoglobin-binding prot 96.8 0.019 7.8E-07 30.9 17.3 113 129-242 154-274 (308)
25 2zfg_A Outer membrane protein 96.6 0.026 1.1E-06 30.1 20.2 49 182-242 292-340 (340)
26 1uyn_X NALP; autotransporter, 96.5 0.028 1.2E-06 29.9 15.4 112 128-241 153-276 (308)
27 3bry_A TBUX; beta barrel, oute 96.4 0.033 1.4E-06 29.5 15.3 59 182-242 377-435 (441)
28 1qjp_A Outer membrane protein 96.2 0.027 1.1E-06 30.0 8.5 19 180-198 74-92 (171)
29 2k0l_A Outer membrane protein 96.1 0.033 1.4E-06 29.5 8.3 22 125-146 138-160 (216)
30 2qom_A Serine protease ESPP; o 95.7 0.073 3.1E-06 27.6 18.5 155 86-242 79-245 (285)
31 2f1c_X OMPG, outer membrane pr 95.1 0.12 5E-06 26.4 10.8 49 181-242 232-280 (286)
32 3prn_A Porin; integral membran 93.7 0.25 1.1E-05 24.7 14.5 38 184-242 252-289 (289)
33 3a2s_X Outer membrane protein 90.5 0.65 2.7E-05 22.4 22.2 46 183-242 310-355 (355)
34 2vdf_A OPCA, outer membrane pr 86.8 1.2 5E-05 21.0 21.2 179 59-242 50-253 (253)
35 2por_A Porin; HET: C8E; 1.80A 83.5 1.7 7.3E-05 20.1 22.8 40 184-242 262-301 (301)
36 2erv_A Hypothetical protein PA 45.7 12 0.00051 15.5 17.2 103 90-209 20-128 (150)
37 2guf_A Vitamin B12 transporter 45.0 12 0.00052 15.4 15.3 49 184-242 546-594 (594)
38 3fid_A Putative outer membrane 36.5 17 0.00072 14.6 11.5 54 93-153 131-185 (296)
39 1fep_A FEPA, ferric enterobact 35.1 18 0.00076 14.5 8.5 20 184-203 656-675 (724)
40 2wjr_A Probable N-acetylneuram 33.4 19 0.00081 14.3 15.7 55 177-242 160-214 (214)
41 3dzm_A TTOA, hypothetical cons 26.9 25 0.0011 13.7 16.1 97 142-242 100-214 (214)
42 2o4v_A Porin P; outer membrane 24.4 28 0.0012 13.5 16.6 50 182-242 362-411 (411)
No 1
>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} SCOP: f.4.1.1
Probab=99.90 E-value=3.5e-22 Score=138.79 Aligned_cols=151 Identities=16% Similarity=0.102 Sum_probs=100.1
Q ss_pred EEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEE
Q ss_conf 00574446441033222145556666676675504799886554457799999886740477764323101003679899
Q gi|254781078|r 55 SGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVL 134 (242)
Q Consensus 55 tG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~ 134 (242)
+|||||+++|++....+..+ ..+...++.+|| ||++|. +|+++.+........ ...+. ..-.+.+
T Consensus 4 ~Gfyv~~~~g~~~~~~~~~~---------~~g~~~~~~~GY--~f~~~~--~e~~y~~~~~~~~~~-~~~~~-~~~~l~~ 68 (155)
T 1p4t_A 4 SGFYVQADAAHAKASSSLGS---------AKGFSPRISAGY--RINDLR--FAVDYTRYKNYKAPS-TDFKL-YSIGASA 68 (155)
T ss_dssp EEEEEEEEEEEEEEECSSCE---------EEEECCEEEEEE--EETTEE--EEEEEEEEEESSCCS-SCCEE-EEEEEEE
T ss_pred CCEEEEEEEEEECCCCCCCC---------CCCEEEEEEEEE--ECCCEE--EEEEEEEECCCCCCC-CCEEE-EEEEEEE
T ss_conf 43389687547024467787---------885768999999--827999--999999824556788-63578-9999999
Q ss_pred EEEEE-ECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEE
Q ss_conf 98633-14403444401145753011000236666555543455653037987316673278768888988874487300
Q gi|254781078|r 135 KAGYS-VDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSV 213 (242)
Q Consensus 135 r~Gya-~~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~ 213 (242)
+.-+. .+++.||+++|+++.+++..... ....+.+..+|.+|+|+||++++||++++||||++.++..
T Consensus 69 ~y~~~~~~~~~py~~~G~g~~~~~~~~~~----------~~~~~~~~~~~~~g~G~~y~~~~~~~~~~ey~y~~~~~~~- 137 (155)
T 1p4t_A 69 IYDFDTQSPVKPYLGARLSLNRASVDLGG----------SDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKVN- 137 (155)
T ss_dssp EEECCCSSSEEEEEEEEEEEEEEEEEETT----------EEEECCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEET-
T ss_pred EEEECCCCCEEEEEEEEEEEEEEECCCCC----------CCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEECCCCC-
T ss_conf 99843677577999965789998714333----------0014785060475114999717899999999998767876-
Q ss_pred ECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 03666666442201234138999886209
Q gi|254781078|r 214 NNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
.+.+.+.|.+++||+|||
T Consensus 138 -----------~~~~~~~~~~~~Gl~Y~F 155 (155)
T 1p4t_A 138 -----------TVKNVRSGELSAGVRVKF 155 (155)
T ss_dssp -----------TEEEEEEEEEEEEEEEEC
T ss_pred -----------CCCCEEEEEEEEEEEEEC
T ss_conf -----------674300369999999999
No 2
>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae}
Probab=99.87 E-value=2.2e-20 Score=129.02 Aligned_cols=171 Identities=18% Similarity=0.103 Sum_probs=110.4
Q ss_pred EEEEEEEEEEEEEEEEEECCCCC---CCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCC-CCCCCCCEE-
Q ss_conf 00057444644103322214555---6666676675504799886554457799999886740477764-323101003-
Q gi|254781078|r 54 WSGNYVGLHISRLYETHPLADTI---NRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTF-YRLKEKYFI- 128 (242)
Q Consensus 54 WtG~YiG~~~G~~~~~~~~~d~~---~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~-~~~~~k~~~- 128 (242)
...||||+++|+++......... ......+....++|+++|| |+.++ +++|+.+.+.+..... .....+...
T Consensus 16 ~~~fYiG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~GY--~f~~~-~~~E~~y~~~~~~~~~~~~~~~~~~~~ 92 (216)
T 2k0l_A 16 DNTWYAGGKLGWSQYHDTGFYGNGFQNNNGPTRNDQLGAGAFGGY--QVNPY-LGFEMGYDWLGRMAYKGSVDNGAFKAQ 92 (216)
T ss_dssp CCCEEEEEEEECSCCCCSCCCCCSCCCSCCCSCCCCCEEEEEEEE--EEETT-EEEEEEEEECCCCCCCCSSCCCSSCCC
T ss_pred CCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEE--EECCC-CEEEEEEEECCCEEEECCCCCCCEEEE
T ss_conf 798999999710886066543566545555313786689999998--94134-107971576484012036776515877
Q ss_pred EEEEEEEEEEEE-CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEE
Q ss_conf 679899986331-4403444401145753011000236666555543455653037987316673278768888988874
Q gi|254781078|r 129 YGDVVLKAGYSV-DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIP 207 (242)
Q Consensus 129 ~Gsvr~r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d 207 (242)
.-++..+..|.+ ..+.+|+++|+++...+....... .....+.+.+.++|.+|+|+||+|++||++++||||++
T Consensus 93 ~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~G~G~~y~l~~~~s~~~ey~y~~ 167 (216)
T 2k0l_A 93 GVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYAS-----TGVSRSEHDTGVSPVFAGGVEWAVTRDIATRLEYQWVN 167 (216)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEEEECCCCCSCCC-----SSSCCCCCCEEEEEEEEEEEEEECSSSCEEEEEESSCS
T ss_pred EEEEEEEEEEEEECCEEEEEEEEEEEEEECCCCCCCC-----CCCCCCCCCCCCCCEECCEEEEEECCCEEEEEEEEEEE
T ss_conf 7899999988510230254100036775101100035-----66443223564131042227997079979999999996
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 48730003666666442201234138999886209
Q gi|254781078|r 208 HHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 208 ~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
... +......+.+.+++++||+|||
T Consensus 168 ~~~----------~~~~~~~~~d~~~~~~Gv~Y~F 192 (216)
T 2k0l_A 168 NIG----------DAGTVGTRPDNGMLSLGVSYRF 192 (216)
T ss_dssp SCC----------CCSCCCCSSCSCCCEEEEEEEC
T ss_pred CCC----------CCCCCCCCCCCCEEEEEEEEEC
T ss_conf 468----------7655452222678999999999
No 3
>1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents, lipids, micelles; NMR {Escherichia coli} SCOP: f.4.1.1 PDB: 1q9f_A 1q9g_A 1qj8_A* 1qj9_A
Probab=99.87 E-value=4.9e-25 Score=154.42 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=95.2
Q ss_pred EEEEEEEEEEECCEEEEEEEEEEEECCCCCCCC-CCCCCEEEEEEEEEEEEEE-CCEEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf 479988655445779999988674047776432-3101003679899986331-44034444011457530110002366
Q gi|254781078|r 89 LGIELGHNIQLEDFVFGINCHTTAAKDDSTFYR-LKEKYFIYGDVVLKAGYSV-DSLLIYGMGGFGGAYVIDSSLEKVES 166 (242)
Q Consensus 89 ~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~-~~~k~~~~Gsvr~r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~~~ 166 (242)
.|+++|||||++++++|+|+++.+.+.+..... ...+.+.. ++.++..|.+ +++++|+++|+++.+.+.+...
T Consensus 22 ~G~~~gy~y~~~~~~~GvE~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~Y~~~G~a~~~~~~~~~~---- 96 (148)
T 1orm_A 22 GGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYY-GITAGPAYRINDWASIYGVVGVGYGKFQTTEYP---- 96 (148)
T ss_dssp CCCCCCBCCCSSSCSCCCCBCCCCCCCCCCSSSCCSCCSCCC-BCCBCCCCCCTTTCCCCCCEECBCCSCSCCSSS----
T ss_pred CEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEEE-EEEEEEEEEECCCEEEEEEEEEEEEEEEECCCC----
T ss_conf 348999718858935999999991247651046742555599-998888998278575999988647887731255----
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 6655554345565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 167 DNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 167 ~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
....+.+.++|++|+|+||++++||++|+||+|.+++ +.+.|.+++||+|||
T Consensus 97 ------~~~~s~~~~~~~~G~Gvey~lt~n~~~~~eY~~~~~~------------------~~d~~~~~vGv~Y~F 148 (148)
T 1orm_A 97 ------TYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIR------------------SVDVGTWIAGVGYRF 148 (148)
T ss_dssp ------SCCCCCCCCCCEECCCCCCCCSSSCBCCCCCCCCCSS------------------SCCCCCCCCCCBCCC
T ss_pred ------CCCCCCCCCCEEEECEEEEEECCCEEEEEEEEEEECC------------------CCCEEEEEEEEEEEC
T ss_conf ------4311355211558130899865887999999997079------------------961216999989989
No 4
>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} SCOP: f.4.1.1 PDB: 1bxw_A* 1g90_A 2ge4_A
Probab=99.82 E-value=1.7e-18 Score=118.58 Aligned_cols=161 Identities=18% Similarity=0.124 Sum_probs=104.3
Q ss_pred EEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCC---CCCCCCCEEEEEE
Q ss_conf 0574446441033222145556666676675504799886554457799999886740477764---3231010036798
Q gi|254781078|r 56 GNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTF---YRLKEKYFIYGDV 132 (242)
Q Consensus 56 G~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~---~~~~~k~~~~Gsv 132 (242)
.||||+++|++..... ... .......-...++++++||+++- . +++|+.+.+.+..... ...+.+.+ .-.+
T Consensus 6 ~wYvG~~~G~~~~~~~-~~~-~~~~~~~~~~~~~g~~~GY~f~~-~--~~~E~~y~~~~~~~~~~~~~~~~~~~~-~~~~ 79 (171)
T 1qjp_A 6 TWYTGAKLGWSQYHDT-GFI-NNNGPTHENKLGAGAFGGYQVNP-Y--VGFEMGYDWLGRMPYKGSVENGAYKAQ-GVQL 79 (171)
T ss_dssp EEEEEEEEEEEC---------------CCCEEEEEEEEEEEEET-T--EEEEEEEEEEEECCC-------CEEEE-EEEE
T ss_pred CEEEEEEECCEEECCC-CCC-CCCCCCCCCCEEEEEEEEEEECC-C--EEEEEEEEECCCCCCCCCCCCCEEEEE-EEEE
T ss_conf 7999998601995265-444-77764457872689999886363-0--999999986586311044544406888-8889
Q ss_pred EEEEEEEEC-CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCC
Q ss_conf 999863314-4034444011457530110002366665555434556530379873166732787688889888744873
Q gi|254781078|r 133 VLKAGYSVD-SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIH 211 (242)
Q Consensus 133 r~r~Gya~~-~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~ 211 (242)
.+|..|.+. ++.||+++|+++.+.+.+. ......+.+..++.+|+|+||.|+++|++++||||++....
T Consensus 80 ~~~~~~~~~~~~~~y~~~G~~~~~~~~~~----------~~~~~~~~~~~~~~~g~G~~y~~~~~~~l~~~y~y~~~~~~ 149 (171)
T 1qjp_A 80 TAKLGYPITDDLDIYTRLGGMVWRADTYS----------NVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGD 149 (171)
T ss_dssp EEEEEEESSSSEEEEEEEEEEEEEEEEEC----------SSSCEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEC----
T ss_pred EEEEEEECCCCEEEEEECCEEEEEEEEEE----------CCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCC
T ss_conf 77899942786149895023899747511----------03663056743458981699992699899999999971587
Q ss_pred EEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 0003666666442201234138999886209
Q gi|254781078|r 212 SVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
......+.+.|.+++||+|||
T Consensus 150 ----------~~~~~~~~~~~~~~lG~~y~F 170 (171)
T 1qjp_A 150 ----------AHTIGTRPDNGMLSLGVSYRF 170 (171)
T ss_dssp --------------------CEEEEEEEEEC
T ss_pred ----------CCCCCCCCCCCEEEEEEEEEC
T ss_conf ----------655442100458999999988
No 5
>2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A
Probab=99.82 E-value=2.9e-19 Score=122.83 Aligned_cols=149 Identities=11% Similarity=0.069 Sum_probs=89.7
Q ss_pred CEEEEEEEEEEEECCEEEEEEEEEEEECCCCC---C---CCCCCCCEEEEEEEEEEEEEECCEEEEEEEEEEEEEEECCC
Q ss_conf 50479988655445779999988674047776---4---32310100367989998633144034444011457530110
Q gi|254781078|r 87 NGLGIELGHNIQLEDFVFGINCHTTAAKDDST---F---YRLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSS 160 (242)
Q Consensus 87 ~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~---~---~~~~~k~~~~Gsvr~r~Gya~~~~l~Y~~gG~A~~~~~~~~ 160 (242)
..+|+.+||+ +.+. +.+|..+.+...... . .............+.+.....+++.||+.+|++++....+.
T Consensus 37 ~~~g~~~gY~--~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pY~g~G~g~~~~~~~~ 113 (197)
T 2f1v_A 37 TQLGLTFTYM--ATDN-IGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNG 113 (197)
T ss_dssp EEEEEEEEEE--SSSS-EEEEEEEESCEEEEEEETTTEEEEEEEEECCEEEEEEECSCTTCSEEEEEEEEEEEEEEEEEE
T ss_pred EEEEEEEEEE--EECC-EEEEEEEEECCCEEECCCCCCCCCEEEECCCEEEEEEEECCCCCCEEEEEEECCEEEEEEEEC
T ss_conf 0887998999--6076-168898775452042344546532177507289999874367872899897202579997310
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 00236666555543455653037987316673278768888988874487300036666664422012341389998862
Q gi|254781078|r 161 LEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINM 240 (242)
Q Consensus 161 ~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY 240 (242)
........ .......++.+||.+|+|+||+|++||++++||||+++++..-...++ .....+.+.+.|.+++||+|
T Consensus 114 ~~~~~~~~--~~~~~~~~~~~g~~~g~G~~Y~i~~~~sl~~eyry~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~Gv~Y 189 (197)
T 2f1v_A 114 FNDHGKEA--GLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGG--AQQHDSVRLDPWVFMFSAGY 189 (197)
T ss_dssp ECHHHHHT--TEEEEEECCEEEEEEEEEEEEECSSSEEEEEEEEEECCEEEEEEEESS--CCCCEEEECCCEEEEEEEEE
T ss_pred CCCCCCCC--CCCCCCCCCCEEEEEECCEEEEECCCEEEEEEEEEEECCCCEEEECCC--CCEEEEEEECCEEEEEEEEE
T ss_conf 35676310--111245466387899624899917983999999999755605784288--62000586372599998999
Q ss_pred EC
Q ss_conf 09
Q gi|254781078|r 241 HF 242 (242)
Q Consensus 241 ~F 242 (242)
||
T Consensus 190 rF 191 (197)
T 2f1v_A 190 RF 191 (197)
T ss_dssp EE
T ss_pred EE
T ss_conf 96
No 6
>2jmm_A Outer membrane protein A; NMR {Escherichia coli}
Probab=99.68 E-value=3.5e-15 Score=100.50 Aligned_cols=145 Identities=18% Similarity=0.093 Sum_probs=91.5
Q ss_pred EEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEE
Q ss_conf 00574446441033222145556666676675504799886554457799999886740477764323101003679899
Q gi|254781078|r 55 SGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVL 134 (242)
Q Consensus 55 tG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~ 134 (242)
.++|||+++|...... -...+.|+++|| ||.++ +++|+.+........ +.+. ..-++.+
T Consensus 5 ~~~YvG~~~G~~~~~~-------------d~~~~~g~~~GY--~fn~~-~~~E~~Y~~~g~~~~----~~~~-~~~~~~~ 63 (156)
T 2jmm_A 5 NTWYTGAKLGWSQYSR-------------ENQLGAGAFGGY--QVNPY-VGFEMGYDWLGRMPR----KAQG-VQLTAKL 63 (156)
T ss_dssp SEEEEEEEEEEETTCC-------------SSCCEEEEEEEE--ECSSS-EEEEEEEEEECSSSS----CEEE-EEEEEEE
T ss_pred CCEEEEEECCCCCCCC-------------CCCCEEEEEEEE--EECCC-EEEEEEEEECCCCCC----CCCC-CEEEEEE
T ss_conf 9798958636412147-------------887433699988--86624-006873660046651----0024-1588999
Q ss_pred EEEEEE-CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEE
Q ss_conf 986331-4403444401145753011000236666555543455653037987316673278768888988874487300
Q gi|254781078|r 135 KAGYSV-DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSV 213 (242)
Q Consensus 135 r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~ 213 (242)
+.-+.. +++.||+++|+++.+.+.... ......+.+.+..++.+|+|+||.++++|++++|+|+.-
T Consensus 64 ~~~~~~~~~~~~y~~~G~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~G~G~~y~~~~~~~~~~~~~~~y------ 130 (156)
T 2jmm_A 64 GYPKLGTDDLDIYTRLGGMVWRADTSDK-------DGNGYISAAEASVSPVFAGGVEYVIRRRITPEIATRLEY------ 130 (156)
T ss_dssp EECTTCTTTCEEEEEEEEEEESSBCCCC-------CSSSCCCCCBCCCCEEEEEEEEEECSSSCSSSEEEEEEE------
T ss_pred EEEECCCCCEEEEEEEEEEEEEEEECCC-------CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEE------
T ss_conf 9876236753398897578998450102-------577620125676384188789997432546355899999------
Q ss_pred ECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 03666666442201234138999886209
Q gi|254781078|r 214 NNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
...+.+.+.|.+++||+|||
T Consensus 131 ---------~~~~~~~d~~~~~~Gl~Y~F 150 (156)
T 2jmm_A 131 ---------QWTNNASDNGMLSLGVSYRF 150 (156)
T ss_dssp ---------EEESSSSCEEEEEEEEEEES
T ss_pred ---------EEECCCCCCCEEEEEEEEEC
T ss_conf ---------98178888767999999999
No 7
>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=98.99 E-value=1.3e-07 Score=59.12 Aligned_cols=169 Identities=14% Similarity=0.130 Sum_probs=95.4
Q ss_pred EEEEEEEEEEEEEEEECCCCCC--CCCCCCCC--CCEEEEEEEEEEEE-CCEEEEEEEEEEEECC--CC-----CCCCCC
Q ss_conf 0574446441033222145556--66667667--55047998865544-5779999988674047--77-----643231
Q gi|254781078|r 56 GNYVGLHISRLYETHPLADTIN--RKTYNSLL--PNGLGIELGHNIQL-EDFVFGINCHTTAAKD--DS-----TFYRLK 123 (242)
Q Consensus 56 G~YiG~~~G~~~~~~~~~d~~~--~~~~n~~~--~~g~G~~~GYN~Q~-~~~V~GvE~d~~~~~~--~~-----~~~~~~ 123 (242)
++|+-+.+++++.+.++.-... .....+.. ...+.+.+||+|.+ +++.+-..+.+.+... +. ....++
T Consensus 120 ~~~~~~~~~yg~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~l~P~~gl~y~~~~~~~f~E~g~~~~l~ 199 (308)
T 1uyn_X 120 IGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWS 199 (308)
T ss_dssp TEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCE
T ss_pred CCEEEEEEEEEEEEEEEEEEECCCCCEEEEEECCEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECCCCEEE
T ss_conf 70058988799982179998447861255771116999999877788269638979999899997236604507740048
Q ss_pred CCCEEEEEEEEEEEE----EEC-CEEEEEEEEEEEEEEECCC--CCCCCCCC-CCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 010036798999863----314-4034444011457530110--00236666-555543455653037987316673278
Q gi|254781078|r 124 EKYFIYGDVVLKAGY----SVD-SLLIYGMGGFGGAYVIDSS--LEKVESDN-SKNAKGRFDGHGSSVVLGIGLDYMVNY 195 (242)
Q Consensus 124 ~k~~~~Gsvr~r~Gy----a~~-~~l~Y~~gG~A~~~~~~~~--~~~~~~~~-~~~~~~~~d~t~~G~tvGaGVEYait~ 195 (242)
.+....-+++.++|. .++ ++-|++..++...-..... .......+ ........+..+.-+.+|+|+++.+++
T Consensus 200 ~~~~~~~~~~~~~Glr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~ 279 (308)
T 1uyn_X 200 GNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGN 279 (308)
T ss_dssp ECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEEEEET
T ss_pred ECCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEEEECC
T ss_conf 71674016689999999985477168988878997527998517999964887515773257888459999839999879
Q ss_pred CEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 76888898887448730003666666442201234138999886209
Q gi|254781078|r 196 DISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 196 nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
+|++.++|.+.- ..+.+.|.+++||+|+|
T Consensus 280 ~~~~~~~y~~~~------------------~~~~~~~~~~~gl~y~F 308 (308)
T 1uyn_X 280 GWNGLARYSYAG------------------SKQYGNHSGRVGVGYRF 308 (308)
T ss_dssp TEEEEEEEEEEE------------------ETTEEEEEEEEEEEEEC
T ss_pred CEEEEEEEEEEE------------------CCCCEEEEEEEEEEEEC
T ss_conf 999999999997------------------77850489999999989
No 8
>2x55_A Coagulase/fibrinolysin; plasminogen activator, transmembrane, aspartyl protease, CEL membrane, omptin, protease, hydrolase,; HET: C8E; 1.85A {Yersinia pestis} PDB: 2x56_A* 2x4m_A*
Probab=98.95 E-value=4.1e-08 Score=61.84 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=44.1
Q ss_pred CCEEEEEEEEEEEECCCCEEEEEEEEEEECCCC-----EEECCCCC---CCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 530379873166732787688889888744873-----00036666---66442201234138999886209
Q gi|254781078|r 179 HGSSVVLGIGLDYMVNYDISLSASYRYIPHHIH-----SVNNSNAK---SDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 179 t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~-----~~~~~~~~---~~~~~~~~~~~~h~v~~GinY~F 242 (242)
...-+-+++++||.+||+|++++||+|..+-.. .++...+. ......-.+.+.++|++||.|+|
T Consensus 221 ~~~~~~~~~~~~Y~vtp~~~l~ve~~~~~~~~~kg~t~~~~~~~G~~~~~~~d~aG~~~~~~tvs~Gl~YrF 292 (293)
T 2x55_A 221 GSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF 292 (293)
T ss_dssp EEEEEEEEEEEEEEEETTEEEEEEEEEEEECC----------------CBCGGGEEEEEEEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEEECCCEEEEEEEEEEEECCCCCCCEEEECCCCCEECCCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 875388877777864788379999999861025786279872677421136775432335569999899977
No 9
>3aeh_A Hemoglobin-binding protease HBP autotransporter; beta-barrel, auto-proteolytic, reaction intermediate, mutant membrane, cell outer membrane; 2.00A {Escherichia coli}
Probab=98.95 E-value=1.5e-07 Score=58.69 Aligned_cols=179 Identities=11% Similarity=0.104 Sum_probs=100.2
Q ss_pred ECCCCCCEE---EEEEEEEEEEEEEEEEECCCCCCCCCCCCC--CCCEEEEEEEEEEEEC-CEEEEEEEEEEEECC--CC
Q ss_conf 037665300---005744464410332221455566666766--7550479988655445-779999988674047--77
Q gi|254781078|r 46 YQDDEYGIW---SGNYVGLHISRLYETHPLADTINRKTYNSL--LPNGLGIELGHNIQLE-DFVFGINCHTTAAKD--DS 117 (242)
Q Consensus 46 ~~~~~~~~W---tG~YiG~~~G~~~~~~~~~d~~~~~~~n~~--~~~g~G~~~GYN~Q~~-~~V~GvE~d~~~~~~--~~ 117 (242)
+..-.|..| .|+|+-+.+++++.+.+...........+. ....+.+.+||+++++ +|.+-..+.+.+... +.
T Consensus 109 ~~~g~Y~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~gy~~~~~~~~~l~P~~~l~y~~~~~~~ 188 (308)
T 3aeh_A 109 WGGGFYASGLFRSGAYFDVIAKYIHNENKYDLNFAGAGKQNFRSHSLYAGAEVGYRYHLTDTTFVEPQAELVWGRLQGQT 188 (308)
T ss_dssp EEEEEEEEEEETTSEEEEEEEEEEEEEEEEEECSTTCEEEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEEEEEEC-
T ss_pred EEEEEEEEEECCCCEEEEEEEEEEEEECEEEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEECCC
T ss_conf 57999999994898289988867897023686025666554221289999996345533887177168899999985375
Q ss_pred -----CCCCCCCCCEEEEEEEEEEEE----EE--CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf -----643231010036798999863----31--4403444401145753011000236666555543455653037987
Q gi|254781078|r 118 -----TFYRLKEKYFIYGDVVLKAGY----SV--DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLG 186 (242)
Q Consensus 118 -----~~~~~~~k~~~~Gsvr~r~Gy----a~--~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvG 186 (242)
....++.+..-.-++++|+|. .+ .+..++..+++.+.+...........+ ........+..+..+.++
T Consensus 189 ~~e~~~~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 267 (308)
T 3aeh_A 189 FNWNDSGMDVSMRRNSVNPLVGRTGVVSGKTFSGKDWSLTARAGLHYEFDLTDSADVHLKD-AAGEHQINGRKDSRMLYG 267 (308)
T ss_dssp --------------CEECCEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEESCC-----------------CEEEEEEEE
T ss_pred EEECCCCCEEEEECCCCCHHHHHHHEEEEEEEECCCEEEEEEEEEEEEEECCCCCEEEEEC-CCCEEEECCCCCCEEEEE
T ss_conf 0104752105740465321221310045589854871599999999998518871599404-554046047788689999
Q ss_pred EEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 31667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 187 IGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 187 aGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
+|+++.+++++++.++|.+.-.+ ...+.+.+++|++|+|
T Consensus 268 lG~~~~~~~~~~l~~~~~~~~g~-----------------~~~~~~~~~~g~ry~F 306 (308)
T 3aeh_A 268 VGLNARFGDNTRLGLEVERSAFG-----------------KYNTDDAINANIRYSF 306 (308)
T ss_dssp EEEEEEETTTEEEEEEEEEEESC-----------------SSEEEEEEEEEEEEEE
T ss_pred EEEEEEECCCEEEEEEEEEEECC-----------------CCCEEEEEEEEEEEEE
T ss_conf 99999988999999999999879-----------------8744179999999996
No 10
>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157}
Probab=98.95 E-value=2.8e-07 Score=57.24 Aligned_cols=167 Identities=13% Similarity=0.108 Sum_probs=92.7
Q ss_pred EEEEEEEEEEEEEEEECCCCCCCCCCCCCC--CCEEEEEEEEEEEEC-CEEEEEEEEEEEECCCC-------CCCCCCCC
Q ss_conf 057444644103322214555666667667--550479988655445-77999998867404777-------64323101
Q gi|254781078|r 56 GNYVGLHISRLYETHPLADTINRKTYNSLL--PNGLGIELGHNIQLE-DFVFGINCHTTAAKDDS-------TFYRLKEK 125 (242)
Q Consensus 56 G~YiG~~~G~~~~~~~~~d~~~~~~~n~~~--~~g~G~~~GYN~Q~~-~~V~GvE~d~~~~~~~~-------~~~~~~~k 125 (242)
++|+-+.+++++.+.+.............. ...+.+.+||+|++. +|.+-..+.+.+..... ....++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~i~P~~~l~y~~~~~~~~~e~~~~~~l~~~ 172 (285)
T 2qom_A 93 GAYIDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQGMHLSMK 172 (285)
T ss_dssp SEEEEEEEEEEEEEEEEEC---CCCCEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEEEEEEEEC--------CCCE
T ss_pred CEEEEEEEEEEEECCCEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEEECCCEEECCCCCCEEEE
T ss_conf 35786656889860423761167532255453001001678877718980782589999999864850103743205881
Q ss_pred CEEEEEEEEE----EEEEEC--C--EEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCE
Q ss_conf 0036798999----863314--4--0344440114575301100023666655554345565303798731667327876
Q gi|254781078|r 126 YFIYGDVVLK----AGYSVD--S--LLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDI 197 (242)
Q Consensus 126 ~~~~Gsvr~r----~Gya~~--~--~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nw 197 (242)
.+-.-++++| +++.+. . +.||+..++.+.-..... . ...... ......+..+..+.+++|+|+.+++++
T Consensus 173 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~lG~~~~~~~~~ 249 (285)
T 2qom_A 173 DKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGE-T-VLRDAS-GEKRIKGEKDSRMLMSVGLNAEIRDNV 249 (285)
T ss_dssp EEEEEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEEETCT-T-BCCCSS-SSCCSSSSEEEEEEEEEEEEEEETTTE
T ss_pred CCCCEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEECCCCCE-E-EECCCC-CEEEECCCCCCEEEEEEEEEEEECCCE
T ss_conf 4750268986411402689738807999999999998278862-9-971566-304512688868999998999989999
Q ss_pred EEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 888898887448730003666666442201234138999886209
Q gi|254781078|r 198 SLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 198 slraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
++.++|.+..-+. ....+.+.+||+|+|
T Consensus 250 ~~~~~~~~~~g~~-----------------~~~~~~~~~glr~~F 277 (285)
T 2qom_A 250 RFGLEFEKSAFGK-----------------YNVDNAVNANFRYSF 277 (285)
T ss_dssp EECEEEEEEESSS-----------------SEEEEEEEECCEEEE
T ss_pred EEEEEEEEEECCC-----------------CCEEEEEEEEEEEEE
T ss_conf 9999999998788-----------------744079999999998
No 11
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell outer membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=98.86 E-value=9.1e-07 Score=54.45 Aligned_cols=172 Identities=12% Similarity=0.091 Sum_probs=93.3
Q ss_pred EEEEEEEEEEEEEEEEEEECCCC------CCCCCCCCCC--CCEEEEEEEEEEEE---CCEEEEEEEEEEEECC--CC--
Q ss_conf 00005744464410332221455------5666667667--55047998865544---5779999988674047--77--
Q gi|254781078|r 53 IWSGNYVGLHISRLYETHPLADT------INRKTYNSLL--PNGLGIELGHNIQL---EDFVFGINCHTTAAKD--DS-- 117 (242)
Q Consensus 53 ~WtG~YiG~~~G~~~~~~~~~d~------~~~~~~n~~~--~~g~G~~~GYN~Q~---~~~V~GvE~d~~~~~~--~~-- 117 (242)
...++|+-+.++++|...+.... .......+.. ..++.+.+||++.+ ++|.+.-.+.+.+... +.
T Consensus 434 ~~~~~~l~~~l~~g~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~gy~~~~~~~~~~~l~P~~~l~y~~~~~~~y~ 513 (632)
T 3kvn_X 434 QENRWWADAALTGGYLDYDDLKRKFALGGGERSEKGDTNGHLWAFSARLGYDIAQQADSPWHLSPFVSADYARVEVDGYS 513 (632)
T ss_dssp EETTEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEECSCSCTTCSEEEEEEEEEEEEEEEECCCB
T ss_pred ECCCEEEEEEEEEEEEECCCEEEEEECCCCCCEEEEEEEEEEEEEEEEECEEEECCCCCCEEEEEEEEEEEEEEECCCEE
T ss_conf 76998999999899863232056662167764058765006999999935675025668689999999999998537535
Q ss_pred ----CCCCCCCCCEEE----EEEEEEEEEEEC-CEEEEEEEEEEEEEEECCC--CCCCCCCCC-CCCCCCCCCCCEEEEE
Q ss_conf ----643231010036----798999863314-4034444011457530110--002366665-5554345565303798
Q gi|254781078|r 118 ----TFYRLKEKYFIY----GDVVLKAGYSVD-SLLIYGMGGFGGAYVIDSS--LEKVESDNS-KNAKGRFDGHGSSVVL 185 (242)
Q Consensus 118 ----~~~~~~~k~~~~----Gsvr~r~Gya~~-~~l~Y~~gG~A~~~~~~~~--~~~~~~~~~-~~~~~~~d~t~~G~tv 185 (242)
....++....-. +.+..|+.+.++ .+.|++..++..-...... ......... .-.....+..+.-+.+
T Consensus 514 E~g~~~~~l~v~~~~~~s~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (632)
T 3kvn_X 514 EKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQLFAEYAHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRV 593 (632)
T ss_dssp CSSCCTTCEEECCEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEE
T ss_pred ECCCCCCCEEECCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEE
T ss_conf 41787200698166420899999999999618826899999998220589731799997378853788445578868999
Q ss_pred EEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 186 GIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 186 GaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
++|+++.++++|++.++|.+. + ..+...|.+.+||.|+|
T Consensus 594 ~lG~~~~~~~~~~l~~~y~~~-~-----------------~~~~~~~~~~~gl~~~F 632 (632)
T 3kvn_X 594 SLGFSQKLAPELSLRGGYNWR-K-----------------GEDDTQQSVSLALSLDF 632 (632)
T ss_dssp EEEEEEEEETTEEEEEEEEEE-E-----------------ETTEEEEEEEEEEEEEC
T ss_pred EEEEEEEECCCEEEEEEEEEE-E-----------------CCCCEEEEEEEEEEEEC
T ss_conf 999999988988999999999-8-----------------88968999999999989
No 12
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=98.43 E-value=4.5e-05 Score=45.18 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=33.0
Q ss_pred CCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCC---CCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 6530379873166732787688889888744873000366666---6442201234138999886209
Q gi|254781078|r 178 GHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKS---DVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 178 ~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~---~~~~~~~~~~~h~v~~GinY~F 242 (242)
..+..+++|+|..+..+++|++.+-|.|.+..+...+..+... .......+.+.+++.++++|||
T Consensus 376 ~~~~~~s~G~gy~~~~~~~~~~d~ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~F 443 (451)
T 3dwo_X 376 GDRYFASLGAGYRFQSMPELSIDAAYSRQFVKEVPLKTVNQDRLGGGRLDGRATSKGQVFSLSATYDF 443 (451)
T ss_dssp CCEEEEEEEEEEECSSSSSEEEEEEEEEEEECCEEECCBCCGGGTSCEEEEEEEEEEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEE
T ss_conf 68779998799997898748999999999737631123465656776113799988899999999997
No 13
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=98.26 E-value=8.2e-05 Score=43.74 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=37.6
Q ss_pred CCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 177 DGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 177 d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
..++..|.+..|+||.++++|++|+-|+|..- .++.... ...-.+.+.+.+.+|+.|++
T Consensus 328 ~~~~d~~~~~~G~ey~~~~~l~lRaGy~y~~~---~~~~~~~----~~~~p~~~~~~~s~G~~~~~ 386 (439)
T 3bs0_A 328 HRYQDITVASIGTAYKYNNDLTLRAGYSYAQQ---ALDSELI----LPVIPAYLKRHVTFGGEYDF 386 (439)
T ss_dssp CCCCCEEEEEEEEEEECSSSEEEEEEEEECC---------CC----CTTSCCCCSEEEEEEEEEES
T ss_pred CCCCCEEEEEEEEEEEECCCEEEEEEEEECCC---CCCCCCC----CCCCCCCCCEEEEEEEEEEC
T ss_conf 13431279998778995798899999997567---7785420----54355778789998899982
No 14
>3dwn_A Long-chain fatty acid transport protein; beta barrel, outer membrane protein, lipid transport, membrane, outer membrane, phage recognition; HET: LDA; 2.50A {Escherichia coli} PDB: 1t16_A* 1t1l_A* 2r4p_A* 2r4n_A* 2r4l_A* 2r4o_A* 2r89_A 2r8a_A* 2r88_A
Probab=98.20 E-value=0.00019 Score=41.77 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=25.6
Q ss_pred EEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 183 VVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 183 ~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
+.+++|+-|.++++|.+.+.|.|...++.+++... ...+.+.+.|++.++++|+|
T Consensus 367 ~~~s~G~~~~~~~~~~id~~y~y~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~y~F 421 (427)
T 3dwn_A 367 FWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGP-----YQFESEGKAWLFGTNFNYAF 421 (427)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEEECCEEEEETT-----EEEEEEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEECCCCEEEEEEEEEEECCCCEECCCC-----EEEEEEEEEEEEEEEEEEEE
T ss_conf 89998898981898099999999985752050674-----15788768999999999996
No 15
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=98.20 E-value=0.00019 Score=41.74 Aligned_cols=146 Identities=16% Similarity=0.086 Sum_probs=74.0
Q ss_pred CCEEEEEEEEEEEEC-CEEEEEEEE----------EEEECCCC----------------------CCCCCCCCCEEEEEE
Q ss_conf 550479988655445-779999988----------67404777----------------------643231010036798
Q gi|254781078|r 86 PNGLGIELGHNIQLE-DFVFGINCH----------TTAAKDDS----------------------TFYRLKEKYFIYGDV 132 (242)
Q Consensus 86 ~~g~G~~~GYN~Q~~-~~V~GvE~d----------~~~~~~~~----------------------~~~~~~~k~~~~Gsv 132 (242)
..+++.++|-.||.. ++-+|+--. +....... .....+.+.+..-.+
T Consensus 209 ~~g~~~~~G~~~~~~~~~~lG~sy~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 288 (451)
T 3dwo_X 209 NTSPGFFAGAVWKPTDRDTLGFAYHAKIRNKLKGHYNLYDHDGGLTEGAIEGGTPGLAYPGLDLRMGASASARLDIPAYA 288 (451)
T ss_dssp EEEEEEEEEEEECSSSSEEEEEEEECCBCCEEEEEEEEEECSTTHHHHHHHTTHHHHHSTTCCCCSEEEEEEECCBCCEE
T ss_pred CCEEEEEEEEEEECCCCCEEEEEECCCCEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEE
T ss_conf 20145788999941337544122215426974442788504665321112467544445665554566421576588689
Q ss_pred EEEEEEEEC-CEEEEEEEEEEEEEEECCCCCCCCCC-CCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCC
Q ss_conf 999863314-40344440114575301100023666-6555543455653037987316673278768888988874487
Q gi|254781078|r 133 VLKAGYSVD-SLLIYGMGGFGGAYVIDSSLEKVESD-NSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHI 210 (242)
Q Consensus 133 r~r~Gya~~-~~l~Y~~gG~A~~~~~~~~~~~~~~~-~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~ 210 (242)
+.=+.|.+. ++++-+. +-| .+.+........ ...........++..|++-+|+||.++++|++|+.|.|-.-..
T Consensus 289 ~~G~~~~~~~~~~l~~d--~~~--~~ws~~~~~~~~~~~~~~~~~~~~~~d~~~~~~G~ey~~~~~l~lRaG~~y~~~p~ 364 (451)
T 3dwo_X 289 SLDWVHQFNDRLSLGAS--ATW--TEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAGVAYDQTPT 364 (451)
T ss_dssp EEEEEEECSSSEEEEEE--EEE--ECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEEEEEEECCSC
T ss_pred EEEEEEEECCCEEEECC--CEE--EEEEEEEECCCCCCCCCCCCCCCEECCCEEEEEEEEEEECCCEEEEEEEEECCCCC
T ss_conf 99899970565478303--056--66420000022468864432310211210488778999389889999999776787
Q ss_pred CEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 30003666666442201234138999886209
Q gi|254781078|r 211 HSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
+. .. ......+.+.+.+.+|+.|+|
T Consensus 365 ~~---~~----~~~~~p~~~~~~~s~G~gy~~ 389 (451)
T 3dwo_X 365 HN---AT----RDPRIPDGDRYFASLGAGYRF 389 (451)
T ss_dssp CT---TT----CCSSSCCCCEEEEEEEEEEEC
T ss_pred CC---CC----CCCCEECCCCEEEEEEEEEEE
T ss_conf 85---43----253001568779998799997
No 16
>3dwn_A Long-chain fatty acid transport protein; beta barrel, outer membrane protein, lipid transport, membrane, outer membrane, phage recognition; HET: LDA; 2.50A {Escherichia coli} PDB: 1t16_A* 1t1l_A* 2r4p_A* 2r4n_A* 2r4l_A* 2r4o_A* 2r89_A 2r8a_A* 2r88_A
Probab=98.08 E-value=0.00034 Score=40.36 Aligned_cols=61 Identities=11% Similarity=0.200 Sum_probs=42.8
Q ss_pred CCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 45565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 175 RFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 175 ~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
....++..|++.+|+||.+++.|++|+.|.|-.-..++-. ....-...+.+.+.+|+.|+|
T Consensus 317 ~~~~~~d~~~~~~G~ey~~~~~l~lRaG~~y~~sp~~~~~-------~~~~~p~~~~~~~s~G~~~~~ 377 (427)
T 3dwn_A 317 KHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQN-------RSISIPDQDRFWLSAGTTYAF 377 (427)
T ss_dssp EECCCCCEEEEEEEEEECCSSSEEEEEEEEEECCCCCGGG-------CCTTSCCCCEEEEEEEEEEES
T ss_pred CCCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCC-------CCCCCCCCCCEEEEEEEEEEC
T ss_conf 4456411589999999992898899999997667878665-------243245679889998898981
No 17
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell outer membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=97.58 E-value=0.0025 Score=35.61 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=35.8
Q ss_pred EEEEEEEEEEE-----CC--EEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEE
Q ss_conf 79899986331-----44--034444011457530110002366665555434556530379873166732787688889
Q gi|254781078|r 130 GDVVLKAGYSV-----DS--LLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSAS 202 (242)
Q Consensus 130 Gsvr~r~Gya~-----~~--~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraE 202 (242)
-.+..++||.+ ++ +.|| .|+.|.+++.+...........-...+.+....-..+|.-+++.+...+.+.++
T Consensus 476 ~~~~~~~gy~~~~~~~~~~~l~P~--~~l~y~~~~~~~y~E~g~~~~~l~v~~~~~~s~~~~~G~~~~~~~~~~~~~~~~ 553 (632)
T 3kvn_X 476 WAFSARLGYDIAQQADSPWHLSPF--VSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQLFAE 553 (632)
T ss_dssp EEEEEEEEECSCSCTTCSEEEEEE--EEEEEEEEEECCCBCSSCCTTCEEECCEEEEEEEEEEEEEEEEESSSSEEEEEE
T ss_pred EEEEEEECEEEECCCCCCEEEEEE--EEEEEEEEECCCEEECCCCCCCEEECCCCCCEEEEEEEEEEEEECCCCEEEEEE
T ss_conf 999999356750256686899999--999999985375354178720069816642089999999999961882689999
Q ss_pred EEE
Q ss_conf 888
Q gi|254781078|r 203 YRY 205 (242)
Q Consensus 203 Y~Y 205 (242)
-.|
T Consensus 554 ~~~ 556 (632)
T 3kvn_X 554 YAH 556 (632)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
No 18
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=97.49 E-value=0.0033 Score=34.95 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=44.1
Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEE-CCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 379873166732787688889888744873000-3666666442201234138999886209
Q gi|254781078|r 182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVN-NSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~-~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
...+.+|+||.|+++..+-+||-|++....+.. .........++..+.+...+.+||.++|
T Consensus 271 ~~~~~lg~~Y~lSKrT~lYa~~~~~~n~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Gmrh~F 332 (332)
T 2fgq_X 271 AHQITLGYVHNLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF 332 (332)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEEECTTCCCCCCBTTTBCSCCCTTCEEEEEEEEEEEEC
T ss_pred CEEEEEEEEEECCCCCHHHHEEHEEECCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEC
T ss_conf 22999999995267715500253042368774210111002478788987599999999989
No 19
>1i78_A Protease VII; integral outer membrane protein, beta barrel, hydrolase; HET: BOG; 2.60A {Escherichia coli K12} SCOP: f.4.4.1
Probab=97.40 E-value=0.0044 Score=34.29 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=43.7
Q ss_pred CCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCE-----EECCCCCCCC--CCCCCCCCEEEEEEEEEEEC
Q ss_conf 5303798731667327876888898887448730-----0036666664--42201234138999886209
Q gi|254781078|r 179 HGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHS-----VNNSNAKSDV--ERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 179 t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~-----~~~~~~~~~~--~~~~~~~~~h~v~~GinY~F 242 (242)
....|-+.+-+.|.+||++++.+|..|..+-+.. ++...+.... ...-.+....++++||-|+|
T Consensus 227 ~~~y~~~~~~agY~vtp~~sl~~e~~y~~~~~~kG~t~~~d~~tg~~~~~~d~aGi~n~~~tvs~GL~Y~F 297 (297)
T 1i78_A 227 DQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYTF 297 (297)
T ss_dssp EEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEEEECCCEEEEEEEEEEEEECCCCCEEEEECCCCEEECCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 87658999998898679879999999999982358609984688614326786460211369999888879
No 20
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=97.29 E-value=0.006 Score=33.54 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=38.7
Q ss_pred CCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 177 DGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 177 d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
..++..|++-+|+||.++++|++|+.|+|..-..+.-.. ...-.+.+.+.+.+|+.|++
T Consensus 330 ~~~~d~~~~~~G~ey~~~~~~~lRaG~~~~~~~~~~~~~-------~~~~~~~~~~~~s~G~g~~~ 388 (441)
T 3bry_A 330 QNYRDISVFGIGAEYRYNAKWTFRGGFHYAQEAIPGNML-------LAVVPATPTTSLTGGVSYAI 388 (441)
T ss_dssp CCCCCEEEEEEEEEEEEETTEEEEEEEEEEEC----------------------CEEEEEEEEEES
T ss_pred CCCCCEEEEEEEEEEEECCCEEEEEEEEECCCCCCCCCC-------CCCCCCCCCEEEEEEEEEEC
T ss_conf 466523799866799967888999999976677777533-------43334568789998998984
No 21
>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1
Probab=97.28 E-value=0.0062 Score=33.48 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=33.5
Q ss_pred EEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 183 VVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 183 ~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
..+-+|+||+++++..+-+||++.+.... +.. ...+..++.+|+.|+|
T Consensus 283 ~~~~vG~~Y~lsk~~~~y~ey~~~~~d~~-----~~~-------~~~~~~~~~vG~r~~F 330 (330)
T 1pho_A 283 NYIDVGATYYFNKNMSAFVDYKINQLDSD-----NKL-------NINNDDIVAVGMTYQF 330 (330)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEECCCSS-----CTT-------CCCCCCEEEEEEEEEC
T ss_pred EEEEEEEEEEECCCEEEEEEEEEEECCCC-----CCC-------CCCCCCEEEEEEEEEC
T ss_conf 99999999991799799999999832577-----667-------6666889999999989
No 22
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=97.26 E-value=0.0064 Score=33.38 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=41.5
Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 3798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
-+.+++|+.|.++++|++.+-|.|...++... ..........+.+.+.+.+.++.+|||
T Consensus 375 ~~~~s~G~~~~~~~~~~idla~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~F 433 (439)
T 3bs0_A 375 KRHVTFGGEYDFDKDSRINLAISFGLRERVQT--PSYLAGTEMLRQSHSQINAVVSYSKNF 433 (439)
T ss_dssp SEEEEEEEEEESSSSEEEEEEEEEEEEEEEEC--------CCCCEEEEEEEEEEEEEEEEE
T ss_pred CEEEEEEEEEECCCCEEEEEEEEEECCCCCCC--CCCCCCCCCEEEEEEEEEEEEEEEEEE
T ss_conf 78999889998289829999999982430014--677777653043246799999999996
No 23
>2j1n_A Outer membrane protein C; beta-barrel, ION transport, non-specific porin, general porin, osmoporin, transmembrane transport; HET: D12; 2.0A {Escherichia coli} PDB: 2j4u_P 2zle_D 2ixx_A* 2xe1_A* 2xe2_A* 2ixw_A* 2xe5_A* 2xe3_A* 2xg6_A 1osm_A*
Probab=97.24 E-value=0.0068 Score=33.26 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=35.0
Q ss_pred EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 98731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
.+-.|++|.|+.+..+-+||+|-+........... +.+...+.+||.|+|
T Consensus 297 ~~~vG~~Y~lsKrt~~Y~~y~~~~~~~~~~~~~~~---------~~~~~~~~vGlr~~F 346 (346)
T 2j1n_A 297 YVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAG---------INTDNIVALGLVYQF 346 (346)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEECCCCCHHHHHHT---------CCCSCEEEEEEEEEC
T ss_pred EEEEEEEEEECCCEEEEEEEEEECCCCCCCCCCCC---------CCCCCEEEEEEEEEC
T ss_conf 99999999936998999999975356632123468---------766778999999989
No 24
>3aeh_A Hemoglobin-binding protease HBP autotransporter; beta-barrel, auto-proteolytic, reaction intermediate, mutant membrane, cell outer membrane; 2.00A {Escherichia coli}
Probab=96.78 E-value=0.019 Score=30.86 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=53.6
Q ss_pred EEEEEEEEEEEEC---CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECC-----CCEEEE
Q ss_conf 6798999863314---40344440114575301100023666655554345565303798731667327-----876888
Q gi|254781078|r 129 YGDVVLKAGYSVD---SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVN-----YDISLS 200 (242)
Q Consensus 129 ~Gsvr~r~Gya~~---~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait-----~nwslr 200 (242)
.-.+..++||.+. ++.+--.+++.|.+++......... .........+....--.+|.-+++.+. ..+.++
T Consensus 154 ~~~~~~e~gy~~~~~~~~~l~P~~~l~y~~~~~~~~~e~~~-~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 232 (308)
T 3aeh_A 154 SLYAGAEVGYRYHLTDTTFVEPQAELVWGRLQGQTFNWNDS-GMDVSMRRNSVNPLVGRTGVVSGKTFSGKDWSLTARAG 232 (308)
T ss_dssp EEEEEEEEEECEESSSSEEEEEEEEEEEEEEEEC----------------CEECCEEEEEEEEEEEEEECSSEEEEEEEE
T ss_pred EEEEEEEEEEEEECCCCCEEEEEEEEEEEEEECCCEEECCC-CCEEEEECCCCCHHHHHHHEEEEEEEECCCEEEEEEEE
T ss_conf 89999996345533887177168899999985375010475-21057404653212213100455898548715999999
Q ss_pred EEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 898887448730003666666442201234138999886209
Q gi|254781078|r 201 ASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 201 aEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
++|.|.......+............+.+.+.-.+.+|+++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~ 274 (308)
T 3aeh_A 233 LHYEFDLTDSADVHLKDAAGEHQINGRKDSRMLYGVGLNARF 274 (308)
T ss_dssp EEEEEEESCC----------------CEEEEEEEEEEEEEEE
T ss_pred EEEEEECCCCCEEEEECCCCEEEECCCCCCEEEEEEEEEEEE
T ss_conf 999985188715994045540460477886899999999998
No 25
>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} SCOP: f.4.3.1 PDB: 1opf_A* 2omf_A* 2zld_A 3k19_A 3k1b_A 3hw9_A* 3hwb_A* 1hxx_A 3fyx_A* 1bt9_A 1mpf_A* 1gfq_A* 1gfp_A* 1gfm_A* 1gfo_A* 1hxu_A 1hxt_A* 1gfn_A*
Probab=96.59 E-value=0.026 Score=30.10 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=35.8
Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 3798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
-..+.+|++|+|++++.+-+||++.+....... ...+...+.+||.|+|
T Consensus 292 ~~~~~~G~~Y~lsk~~~~y~~y~~~~~d~~~~~------------~~~~~~~~~vGlry~F 340 (340)
T 2zfg_A 292 VNYFEVGATYYFNKNMSTYVDYIINQIDSDNKL------------GVGSDDTVAVGIVYQF 340 (340)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECCCTTCTT------------CCCCBCEEEEEEEEEC
T ss_pred EEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC------------CCCCCCEEEEEEEEEC
T ss_conf 489999999991689899999999802577767------------7777879999999989
No 26
>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=96.52 E-value=0.028 Score=29.85 Aligned_cols=112 Identities=11% Similarity=0.037 Sum_probs=55.7
Q ss_pred EEEEEEEEEEEEEC---CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC--EEEEEE
Q ss_conf 36798999863314---4034444011457530110002366665555434556530379873166732787--688889
Q gi|254781078|r 128 IYGDVVLKAGYSVD---SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYD--ISLSAS 202 (242)
Q Consensus 128 ~~Gsvr~r~Gya~~---~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~n--wslraE 202 (242)
...++.+++||.+. ++.+=-.+|+.|.+++.+....... ...-...+.+....-.++|.-+++.+..+ +.++++
T Consensus 153 ~~~~~~~~~gy~~~~~~~~~l~P~~gl~y~~~~~~~f~E~g~-~~~l~~~~~~~~~~~~~~Glr~~~~~~~~~~~~~~~~ 231 (308)
T 1uyn_X 153 TLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGS-ALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAG 231 (308)
T ss_dssp EEEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESC-TTCCEECCEEEEEEEEEEEEEEEEECSSSEEEEEEEE
T ss_pred CEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECC-CCEEEECCCCCEEEEEEEEEEEEEECCCCEEEEEEEE
T ss_conf 169999998777882696389799998999972366045077-4004871674016689999999985477168988878
Q ss_pred EEEEECCCCEEECCC-------CCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 888744873000366-------666644220123413899988620
Q gi|254781078|r 203 YRYIPHHIHSVNNSN-------AKSDVERVDRKGNAHIASLGINMH 241 (242)
Q Consensus 203 Y~Y~d~g~~~~~~~~-------~~~~~~~~~~~~~~h~v~~GinY~ 241 (242)
|+| +++........ ....+...+.+.+.-.+.+|+++.
T Consensus 232 ~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~G~~~~ 276 (308)
T 1uyn_X 232 VER-DLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVE 276 (308)
T ss_dssp EEE-ESSCCCCCCCC-----------------CCEEEEEEEEEEEE
T ss_pred EEE-ECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEEE
T ss_conf 997-527998517999964887515773257888459999839999
No 27
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=96.42 E-value=0.033 Score=29.52 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=34.6
Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 3798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
-+.+.+|+-|.++++|++.+-|.|...++...+.. ......+..+...+.+.++.+|||
T Consensus 377 ~~~~s~G~g~~~~~~~~ldla~~y~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~F 435 (441)
T 3bry_A 377 TTSLTGGVSYAIGKNDVIDFALSVALRKTLDNASQ--PNTAVPISVTHSQVNAVIAYQKRF 435 (441)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECCBC---------------CEEEEEEEEEEEEEEEE
T ss_pred CEEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCC--CCCCCCEEEEEEEEEEEEEEEEEE
T ss_conf 78999899898489979999999996344234566--677531688889999999999997
No 28
>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} SCOP: f.4.1.1 PDB: 1bxw_A* 1g90_A 2ge4_A
Probab=96.25 E-value=0.027 Score=29.99 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=12.1
Q ss_pred CEEEEEEEEEEEECCCCEE
Q ss_conf 3037987316673278768
Q gi|254781078|r 180 GSSVVLGIGLDYMVNYDIS 198 (242)
Q Consensus 180 ~~G~tvGaGVEYait~nws 198 (242)
..++.+.+...|.++++|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~ 92 (171)
T 1qjp_A 74 AQGVQLTAKLGYPITDDLD 92 (171)
T ss_dssp EEEEEEEEEEEEESSSSEE
T ss_pred EEEEEEEEEEEEECCCCEE
T ss_conf 8888897789994278614
No 29
>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae}
Probab=96.10 E-value=0.033 Score=29.51 Aligned_cols=22 Identities=5% Similarity=-0.112 Sum_probs=11.2
Q ss_pred CCEEEEEEEEEEEEEEC-CEEEE
Q ss_conf 10036798999863314-40344
Q gi|254781078|r 125 KYFIYGDVVLKAGYSVD-SLLIY 146 (242)
Q Consensus 125 k~~~~Gsvr~r~Gya~~-~~l~Y 146 (242)
+..+...+-+-+.|.+. ++.+.
T Consensus 138 ~~~~~~~~G~G~~y~l~~~~s~~ 160 (216)
T 2k0l_A 138 DTGVSPVFAGGVEWAVTRDIATR 160 (216)
T ss_dssp CEEEEEEEEEEEEEECSSSCEEE
T ss_pred CCCCCCEECCEEEEEECCCEEEE
T ss_conf 56413104222799707997999
No 30
>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157}
Probab=95.72 E-value=0.073 Score=27.60 Aligned_cols=155 Identities=11% Similarity=-0.002 Sum_probs=67.2
Q ss_pred CCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCC---CCCCCCC-EEEEEEEEEEEEEE--C-CEEEEEEEEEEEEEEEC
Q ss_conf 5504799886554457799999886740477764---3231010-03679899986331--4-40344440114575301
Q gi|254781078|r 86 PNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTF---YRLKEKY-FIYGDVVLKAGYSV--D-SLLIYGMGGFGGAYVID 158 (242)
Q Consensus 86 ~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~---~~~~~k~-~~~Gsvr~r~Gya~--~-~~l~Y~~gG~A~~~~~~ 158 (242)
...+|+++.|.++-+ |-+-.-+-+++.+.+... ...+.+. ...-++.+++||.+ . ++.+=-.+++.|.+++.
T Consensus 79 ~~~~g~Y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~i~P~~~l~y~~~~~ 157 (285)
T 2qom_A 79 SVGAGLYASAMFDSG-AYIDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSG 157 (285)
T ss_dssp EEEEEEEEEEECTTS-EEEEEEEEEEEEEEEEEC---CCCCEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEEEEEE
T ss_pred EEEEEEEEEEECCCC-EEEEEEEEEEEECCCEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEEEC
T ss_conf 488999999972773-5786656889860423761167532255453001001678877718980782589999999864
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC-----EEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEE
Q ss_conf 10002366665555434556530379873166732787-----6888898887448730003666666442201234138
Q gi|254781078|r 159 SSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYD-----ISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHI 233 (242)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~n-----wslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~ 233 (242)
....... ....-...+.+....-..+|+-+++.+..+ ..++++|+|-..+...+............+.+.+.-.
T Consensus 158 ~~~~e~~-~~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (285)
T 2qom_A 158 KQFAWKD-QGMHLSMKDKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEKRIKGEKDSRML 236 (285)
T ss_dssp EEC---------CCCEEEEEEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEEETCTTBCCCSSSSCCSSSSEEEEEE
T ss_pred CCEEECC-CCCCEEEECCCCEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEECCCCCEEEECCCCCEEEECCCCCCEEE
T ss_conf 8501037-432058814750268986411402689738807999999999998278862997156630451268886899
Q ss_pred EEEEEEEEC
Q ss_conf 999886209
Q gi|254781078|r 234 ASLGINMHF 242 (242)
Q Consensus 234 v~~GinY~F 242 (242)
+.+|+++++
T Consensus 237 ~~lG~~~~~ 245 (285)
T 2qom_A 237 MSVGLNAEI 245 (285)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
T ss_conf 999899998
No 31
>2f1c_X OMPG, outer membrane protein G; beta barrel; HET: C8E; 2.30A {Escherichia coli K12} PDB: 2wvp_A* 2jqy_A 2iwv_A* 2iww_A*
Probab=95.12 E-value=0.12 Score=26.45 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=38.1
Q ss_pred EEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 03798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 181 SSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 181 ~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
...-+|.=++|.|+|.|+|-+||-|-.-..+. + -+.+.|-.+|||+|.|
T Consensus 232 ~~~R~g~~~~Y~i~~~~~l~gEy~ye~~~~~~---~----------~~~~~~~~~vGv~YsF 280 (286)
T 2f1c_X 232 DFNRVGLFYGYDFQNGLSVSLEYAFEWQDHDE---G----------DSDKFHYAGVGVNYSF 280 (286)
T ss_dssp CCEEEEEEEEEECSSSEEEEEEEEEEECC-------------------CCEEEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCCCEEEEEEEEEEEECCCC---C----------CCCEEEEEEEEEEEEE
T ss_conf 52699999811038966999999999961577---8----------8735887888789998
No 32
>3prn_A Porin; integral membrane protein, pore eyelet mutant; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=93.75 E-value=0.25 Score=24.67 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=29.5
Q ss_pred EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 98731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
.+++|++|.|++++++.++|.+.+. +.-...+||+|.|
T Consensus 252 ~~~~g~~Y~l~~~~~l~a~~~~~~~---------------------d~t~~~~Gv~~~F 289 (289)
T 3prn_A 252 AYGIGADYQFAEGVKVSGSVQSGFA---------------------NETVADVGVRFDF 289 (289)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECTT---------------------CCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCEEEEEEEEEECC---------------------CCCCEEEEEEEEC
T ss_conf 8999999976999799999999538---------------------9853603778889
No 33
>3a2s_X Outer membrane protein II; beta barrel, porin, neisseria mening cell membrane, cell outer membrane, ION transport, membrane transmembrane; HET: SUC LDA; 2.20A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X*
Probab=90.52 E-value=0.65 Score=22.41 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=35.1
Q ss_pred EEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 183 VVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 183 ~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
..+..|++|.|+++.++-+||.|++....+ -+.+.-.+.+||.|+|
T Consensus 310 ~~~~lG~~Y~lSKrt~~Y~~~~~~~~~~~~--------------~~~~~~~~~~Glrh~F 355 (355)
T 3a2s_X 310 DQVIVGADYDFSKRTSALVSAGWLKQGKGA--------------GKVEQTASMVGLRHKF 355 (355)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEEESSTT--------------SCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEECCCEEEEEEEEEEECCCCC--------------CCCCEEEEEEEEEEEC
T ss_conf 999999999805873899999999956898--------------8863179999999989
No 34
>2vdf_A OPCA, outer membrane protein; invasin, adhesin, beta barrel; 1.95A {Neisseria meningitidis} SCOP: f.4.4.2 PDB: 1k24_A
Probab=86.79 E-value=1.2 Score=20.95 Aligned_cols=179 Identities=13% Similarity=0.039 Sum_probs=84.1
Q ss_pred EEEEEEEEEEEEECCCCCC-----CCCCCCCCCC-----EEEEEEEEEEEE---CC--EEEEEEEEEEEECCCCC---CC
Q ss_conf 4446441033222145556-----6666766755-----047998865544---57--79999988674047776---43
Q gi|254781078|r 59 VGLHISRLYETHPLADTIN-----RKTYNSLLPN-----GLGIELGHNIQL---ED--FVFGINCHTTAAKDDST---FY 120 (242)
Q Consensus 59 iG~~~G~~~~~~~~~d~~~-----~~~~n~~~~~-----g~G~~~GYN~Q~---~~--~V~GvE~d~~~~~~~~~---~~ 120 (242)
+.+.++++.++.+.-+... .+..+.-.+. ..-+++||-+.. ++ |-.|+..-+........ ..
T Consensus 50 ~r~e~~ysr~K~d~~~~~~~~~~~~k~~g~~~~~G~~~~~~dvyagY~yT~pisd~~~lr~GlGLGYr~lkD~lss~~~~ 129 (253)
T 2vdf_A 50 IRLEAGFGRSKKNIINLETDENKLGKTKNVKLPTGVPENRIDLYTGYTYTQTLSDSLNFRVGAGLGFESSKDSIKTTKHT 129 (253)
T ss_dssp EEEEEEEEEEEEEEEECCCHHHHTSSCCCCCCCCSEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEC------
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEECCCCEEEEEECCHHCCCCC
T ss_conf 27886423455420023232344322256334367741136777667871666655105621341256541010013777
Q ss_pred CCCCCCEEEEEEEEEEEEEECCEEEEEEEEEEE----EEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 231010036798999863314403444401145----7530110002366665555434556530379873166732787
Q gi|254781078|r 121 RLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGG----AYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYD 196 (242)
Q Consensus 121 ~~~~k~~~~Gsvr~r~Gya~~~~l~Y~~gG~A~----~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~n 196 (242)
....++-|+--+-+-+--+++.- .+++.=+++ ..-+.+......+. +. -.....-+|+-+++-++..+++.
T Consensus 130 ~ydr~q~~Yl~i~a~v~~~L~~g-w~l~p~iEyn~~L~Gkq~Sy~s~~~~~---~d-~n~q~~G~G~~lsv~isKql~d~ 204 (253)
T 2vdf_A 130 LHSSRQSWLAKVHADLLSQLGNG-WYINPWSEVKFDLNSRYKLNTGVTNLK---KD-INQKTNGWGFGLGANIGKKLGES 204 (253)
T ss_dssp CEEEEEEEEEEEEEEEEEEEETT-EEEEEEEEEEEEEEEEEEECC----------C-EEEECCEEEEEEEEEEEEECC--
T ss_pred CCCCCEEEEEECCEEEEEECCCC-CEEEEEEEEEEEECCCEEEEECCCCCC---CC-HHHHCCCCEEEEEEEHHHCCCCC
T ss_conf 66720168963145899844898-376106999987335167711123566---75-00103684089988601123641
Q ss_pred EEEEEE--EEEEECCCCEEE-CCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 688889--888744873000-3666666442201234138999886209
Q gi|254781078|r 197 ISLSAS--YRYIPHHIHSVN-NSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 197 wslraE--Y~Y~d~g~~~~~-~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
+++..| |||.++...... ......+....+.+...|-.=+.|.++|
T Consensus 205 ~~I~~ePfyRyW~Ik~S~~~~v~~~~~~~~~~EPkNtt~E~Glrv~~~F 253 (253)
T 2vdf_A 205 ASIEAGPFYKQRTYKESGEFSVTTKSGDVSLTIPKTSIREYGLRVGIKF 253 (253)
T ss_dssp CEEEEEEEEEEEEECCCCCBCC-------CBCCCCEEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEEECCCCCEEEECCCCCEEEECCCCCCEEEEEEEEEEC
T ss_conf 2134410267644226764278615762234557873203118899709
No 35
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=83.54 E-value=1.7 Score=20.08 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=32.6
Q ss_pred EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 98731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
.++.|+||.|++++++.+||.+.+.. .+..++.+||+|+|
T Consensus 262 ~~~lG~~Y~lsk~~~~~~~y~~~~~d-------------------~~~~~~~~G~~~~F 301 (301)
T 2por_A 262 YYGLGASYDLGGGASIVGGIADNDLP-------------------NSDMVADLGVKFKF 301 (301)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEECSS-------------------SCCCEEEEEEEEEC
T ss_pred EEEEEEEEECCCCEEEEEEEEEEECC-------------------CCCEEEEEEEEEEC
T ss_conf 99999999889998999999998168-------------------99647999879989
No 36
>2erv_A Hypothetical protein PAER03002360; beta barrel, outer membrane, enzyme, hydrolase, lipopolysaccharide, membrane protein; HET: CXE; 2.00A {Pseudomonas aeruginosa}
Probab=45.66 E-value=12 Score=15.45 Aligned_cols=103 Identities=15% Similarity=0.045 Sum_probs=50.7
Q ss_pred EEEEEEEE---EECCEEEEEEEEEEEE--CCCCCCCCCCCCCEEEE-EEEEEEEEEECCEEEEEEEEEEEEEEECCCCCC
Q ss_conf 79988655---4457799999886740--47776432310100367-989998633144034444011457530110002
Q gi|254781078|r 90 GIELGHNI---QLEDFVFGINCHTTAA--KDDSTFYRLKEKYFIYG-DVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEK 163 (242)
Q Consensus 90 G~~~GYN~---Q~~~~V~GvE~d~~~~--~~~~~~~~~~~k~~~~G-svr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~ 163 (242)
+++-.++| |.+.|-+..+.++... ..+...... ..+| +..-|.-++-+.+-+|+-+|+..........
T Consensus 20 ~~~~d~~~~w~~~~~~~l~~~~e~~~~~w~~~~~~~~~----~~lg~~Pv~r~~~~~~~~~~f~E~GiG~~~~s~~~~-- 93 (150)
T 2erv_A 20 GLSWDWDKSWWQTSTGRLTGYWDAGYTYWEGGDEGAGK----HSLSFAPVFVYEFAGDSIKPFIEAGIGVAAFSGTRV-- 93 (150)
T ss_dssp EEEEECCCCEEEETTEEEEEEEEEEEEEECCCSSCSSE----EEEEEEEEEEEEECCSSEEEEEEEEEEEEEESSSEE--
T ss_pred EEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCC----CEEEEEEEEEEEECCCCCCEEEEEEECEEEEECCCC--
T ss_conf 98928880011268842899998888996159977872----168777799998479971679995124398704311--
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECC
Q ss_conf 3666655554345565303798731667327876888898887448
Q gi|254781078|r 164 VESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHH 209 (242)
Q Consensus 164 ~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g 209 (242)
.... =.++.-+.-..|+-|.+.+++.+ +|||..+.
T Consensus 94 -~~~~--------lg~~~qF~~~lg~g~~~~~~~~l--~~~~~H~S 128 (150)
T 2erv_A 94 -GDQN--------LGSSLNFEDRIGAGLKFANGQSV--GVRAIHYS 128 (150)
T ss_dssp -TTEE--------CSCSEEEEEEEEEEEEETTSCEE--EEEEEEEE
T ss_pred -CCCC--------CCCEEEEEEEEEEEEEECCCCEE--EEEEEEEE
T ss_conf -7997--------67539865458899996799789--99999860
No 37
>2guf_A Vitamin B12 transporter BTUB; beta barrel, cubic mesophase, cobalamin, colicin, transport protein; HET: MPG; 1.95A {Escherichia coli} SCOP: f.4.3.3 PDB: 1nqg_A* 1nqh_A* 1ujw_A* 1nqe_A* 2ysu_A 3m8b_A* 3m8d_A* 2gsk_A* 1nqf_A*
Probab=45.01 E-value=12 Score=15.40 Aligned_cols=49 Identities=8% Similarity=0.105 Sum_probs=22.5
Q ss_pred EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 98731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
++-+++.|.++++|++++.-. +.-.+.+..... +-..--.+++||+|+|
T Consensus 546 ~~dl~~~y~~~~~~~l~~~v~--Nl~d~~y~~~~~--------~~~~gR~~~l~~~y~F 594 (594)
T 2guf_A 546 LWDLAVAYPVTSHLTVRGKIA--NLFDKDYETVYG--------YQTAGREYTLSGSYTF 594 (594)
T ss_dssp EEEEEEEEESSSSEEEEEEEE--STTCCCC----------------CCCEEEEEEEEEC
T ss_pred EEEEEEEEEECCCEEEEEEEE--ECCCCCEECCCC--------CCCCCEEEEEEEEEEC
T ss_conf 999999999289879999999--289995111068--------6789989999999989
No 38
>3fid_A Putative outer membrane protein (LPXR); lipopolysaccharide-modifying outer membrane enzyme; HET: CXE; 1.90A {Salmonella typhimurium}
Probab=36.46 E-value=17 Score=14.63 Aligned_cols=54 Identities=9% Similarity=-0.042 Sum_probs=26.6
Q ss_pred EEEEEEECC-EEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCEEEEEEEEEEE
Q ss_conf 886554457-7999998867404777643231010036798999863314403444401145
Q gi|254781078|r 93 LGHNIQLED-FVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGG 153 (242)
Q Consensus 93 ~GYN~Q~~~-~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~r~Gya~~~~l~Y~~gG~A~ 153 (242)
-|++.|+.| +++-++.+....-. .....+..+++..++-.++++.-|+..|+-+
T Consensus 131 ~GWd~Qi~ne~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~lGn~~T~~~~G~~~ 185 (296)
T 3fid_A 131 PAWQDQIENRYGYTAKGMVSLTPA-------IDILGVNVGFYPEVSAVGGNLFQYLGYGATV 185 (296)
T ss_dssp GGGGGCBCCEEEEEEEEEEEECCE-------EEETTEEEEEEEEEEEEEESSEEEEEEEEEE
T ss_pred CCHHHHCCCCHHHHHHHHHHHHHC-------CCCCCCCEEEEEEEEEEECCEEEEECCCEEE
T ss_conf 774786456312223377554211-------3567762678884458701123543166699
No 39
>1fep_A FEPA, ferric enterobactin receptor; outer membrane, iron transport, transport, TONB, signal, membrane protein; 2.40A {Escherichia coli K12} SCOP: f.4.3.3
Probab=35.13 E-value=18 Score=14.51 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=11.2
Q ss_pred EEEEEEEEECCCCEEEEEEE
Q ss_conf 98731667327876888898
Q gi|254781078|r 184 VLGIGLDYMVNYDISLSASY 203 (242)
Q Consensus 184 tvGaGVEYait~nwslraEY 203 (242)
++-+.+.|.++++|++.+.-
T Consensus 656 ~~dl~~~y~~~~~~~l~~~v 675 (724)
T 1fep_A 656 IVGLSATWDVTKNVSLTGGV 675 (724)
T ss_dssp EEEEEEEEECSSSEEEEEEE
T ss_pred EEEEEEEEEECCCEEEEEEE
T ss_conf 99989999959985999999
No 40
>2wjr_A Probable N-acetylneuraminic acid outer membrane channel protein NANC; cell membrane, ION transport, transmembrane, porin, transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=33.37 E-value=19 Score=14.35 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=36.1
Q ss_pred CCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 177 DGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 177 d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
+...+-|..-.-+.|.+.++|.--+|+.+++-... .+ . + .+...-..||||.|.|
T Consensus 160 n~k~~~~ehn~~~~Yk~~~~w~PYvE~g~v~~~~~-~d-------~-~--~~~~q~r~RVGv~Y~F 214 (214)
T 2wjr_A 160 NHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGV-YN-------G-R--DNLSENSYRIGVSFKL 214 (214)
T ss_dssp TSSSEEEEEEEEEEECSSSSEEEEEEEEECCSCEE-ET-------T-E--EEECCEEEEEEEEECC
T ss_pred CCCCCEEEEEEEEEEEECCCCCCEEEEEEEECCCC-CC-------C-C--CCCCCCEEEEEEEEEC
T ss_conf 88774479999999997998521699998505501-08-------8-7--4441327999989769
No 41
>3dzm_A TTOA, hypothetical conserved protein; OMP, beta-barrel, unknown function; HET: C8E; 2.80A {Thermus thermophilus HB27}
Probab=26.86 E-value=25 Score=13.71 Aligned_cols=97 Identities=16% Similarity=0.088 Sum_probs=48.9
Q ss_pred CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEE--EEEECCCCEEEC---C
Q ss_conf 40344440114575301100023666655554345565303798731667327876888898--887448730003---6
Q gi|254781078|r 142 SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASY--RYIPHHIHSVNN---S 216 (242)
Q Consensus 142 ~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY--~Y~d~g~~~~~~---~ 216 (242)
.++||+.+-+..-.-... ...+....-....++...|.=.|.=..|++++|+|+-..- +|+--+.-+... +
T Consensus 100 ~~~~Y~GgRYgmF~a~~t----~~ed~~~~~s~t~sSnafG~G~G~ma~Yal~~nlSLVgDLGvDyyF~~~it~~~~~~~ 175 (214)
T 3dzm_A 100 EVAPYFGVRYNFFSGGYT----DPEDNLTIKAQTISSNQLGLGLGVRAAYPLMPNLSLVGDLGVDYYFQACFTRVEEDDS 175 (214)
T ss_dssp EEEEEEEEEEEEEEEEEE----CCSSSSSSCEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEECCCCEEEEEECSS
T ss_pred EEEEECCCEEEEEECCCC----CCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCEEEECCHHHEECCEEEEECCCCC
T ss_conf 235760510245512010----3677741012046503335350115520026873024304613301140464114688
Q ss_pred C---------CCCCCCCCCC----CCCEEEEEEEEEEEC
Q ss_conf 6---------6666442201----234138999886209
Q gi|254781078|r 217 N---------AKSDVERVDR----KGNAHIASLGINMHF 242 (242)
Q Consensus 217 ~---------~~~~~~~~~~----~~~~h~v~~GinY~F 242 (242)
. +.+.-+.++. -...--+|+|+-|+|
T Consensus 176 g~~~~~s~~pGd~~Y~~vn~~f~~PgtvfKaRvG~k~~F 214 (214)
T 3dzm_A 176 GNKSQSSVCPGDSGYEDVNKFVTQPEWVLKLRLGAAYRF 214 (214)
T ss_dssp CCEEEEEECTTSTTHHHHHHHBCCCSEEEEEEEEEEEEC
T ss_pred CCCCCCEECCCCCCHHHHHCEECCCCEEEEEEEEEEECC
T ss_conf 762333054687211223221547760788875013429
No 42
>2o4v_A Porin P; outer membrane, phosphate, transport, channel, membrane protein; HET: C8E; 1.94A {Pseudomonas aeruginosa PAO1}
Probab=24.44 E-value=28 Score=13.46 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=33.8
Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 3798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r 182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 (242)
Q Consensus 182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F 242 (242)
.-.+.+||.|-+++|..++++|.+.+..... ....+.+.+.+.+.+-|.|
T Consensus 362 ~~~~t~Glny~~~~~~kl~~~Y~~~~~~~~~-----------~~~~~~~~~~~~~r~Q~~F 411 (411)
T 2o4v_A 362 GKTHTLGVNWYANEAVKVSANYVKAKTDKIS-----------NANGDDSGDGLVMRLQYVF 411 (411)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEEEEEESBC-----------CTTCCCEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEECCCEEEEEEEEEEECCCCC-----------CCCCCCCCCEEEEEEEEEC
T ss_conf 6899999999983899999999996366566-----------6688887668999986789
Done!