HHSEARCH alignment of GI: 254781078 and SCOP domain: d1osma_

Alignment

Probab=97.16  E-value=0.0048  Score=32.79  Aligned_cols=50  Identities=20%  Similarity=0.345  Sum_probs=34.9

Q ss_pred             EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             98731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .+-+|+||.|+.+..+-+||+|.+...........         ..+..++.+||.|+|
T Consensus       293 ~~~~G~~Y~lsKrt~~Y~~y~~~~~~~~~~~~~~~---------~~~~~~~~~G~r~~F  342 (342)
T d1osma_         293 YVDVGATYYFNKNMSTYVDYKINLLDDNSFTRSAG---------ISTDDVVALGLVYQF  342 (342)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEECCCCCHHHHHHT---------CCCSCEEEEEEEEEC
T ss_pred             EEEEEEEEEECCCEEEEEEEEEECCCCCCCCCCCC---------CCCCCEEEEEEEEEC
T ss_conf             99999999965898999999998156743234467---------666778999999989

SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Porin
domain: Porin
species: Klebsiella pneumoniae [TaxId: 573]