HHSEARCH alignment of GI: 254781078 and SCOP domain: d1qj8a_

Alignment
>d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]}
Probab=99.94  E-value=9.2e-26  Score=157.10  Aligned_cols=127  Identities=17%  Similarity=0.167  Sum_probs=102.1

Q ss_pred             EEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEE-CCEEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf             04799886554457799999886740477764323101003679899986331-44034444011457530110002366
Q gi|254781078|r   88 GLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSV-DSLLIYGMGGFGGAYVIDSSLEKVES  166 (242)
Q Consensus        88 g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~r~Gya~-~~~l~Y~~gG~A~~~~~~~~~~~~~~  166 (242)
                      ..|+.+|||||++++++|+|+++.+...+..............++.++..|.+ ++++||+++|+++.+.+.+..     
T Consensus        21 ~~G~~lgy~y~~~n~~~gvE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~G~a~~~~~~~~~-----   95 (148)
T d1qj8a_          21 MGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEY-----   95 (148)
T ss_dssp             EEEEEEEEEEECTTCSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEET-----
T ss_pred             CCEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEECCC-----
T ss_conf             114999982891791799999999885678304663110158899988889747745498986778999984137-----


Q ss_pred             CCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             6655554345565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  167 DNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       167 ~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                           ...+.+.+.+||++|+|+||++++||++|+||||.+++                  +.+.+.+++||+|||
T Consensus        96 -----~~~~~~~~~~g~~~G~Gvey~l~~n~~~~~eY~~~~~~------------------~~d~~~~~~Gv~YrF  148 (148)
T d1qj8a_          96 -----PTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIR------------------SVDVGTWIAGVGYRF  148 (148)
T ss_dssp             -----TTEEEEEEEEEEEEEEEEEECSSTTEEEEEEEEEEEET------------------TEEEEEEEEEEEEEC
T ss_pred             -----CCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECC------------------CCEEEEEEEEEEEEC
T ss_conf             -----87655645444469621799806887999999997479------------------943306999989889


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: OMPA-like
family: Outer membrane protein
domain: Outer membrane protein X (OMPX)
species: Escherichia coli [TaxId: 562]