HHSEARCH alignment of GI: 254781078 and SCOP domain: d1t16a_

Alignment
>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL {Escherichia coli [TaxId: 562]}
Probab=97.90  E-value=0.00043  Score=38.50  Aligned_cols=136  Identities=13%  Similarity=0.117  Sum_probs=73.2

Q ss_pred             EEEEEEEEEC-CEEEEEEEEEEE-ECCCC-------CCCCCCCCCEEEEEEEEEEEEEE--CCEEEEEEEEEEEEEEECC
Q ss_conf             9988655445-779999988674-04777-------64323101003679899986331--4403444401145753011
Q gi|254781078|r   91 IELGHNIQLE-DFVFGINCHTTA-AKDDS-------TFYRLKEKYFIYGDVVLKAGYSV--DSLLIYGMGGFGGAYVIDS  159 (242)
Q Consensus        91 ~~~GYN~Q~~-~~V~GvE~d~~~-~~~~~-------~~~~~~~k~~~~Gsvr~r~Gya~--~~~l~Y~~gG~A~~~~~~~  159 (242)
                      +.+|.-+++. +|.+.++.+... ...+.       ..........|....+.|+|-.+  .+.|.+ .+|++|...-. 
T Consensus       275 ~~~G~~~~~~~~~~l~~d~~~~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ey~~~~~l~l-R~Gy~y~~~~~-  352 (427)
T d1t16a_         275 WEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTF-RTGIAFDDSPV-  352 (427)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECGGGCCEEEEECTTSCEEEEEECCCCCEEEEEEEEEECCSSSEEE-EEEEEEECCSS-
T ss_pred             EEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEE-EEEEEECCCCC-
T ss_conf             9999999725651688721321110001333345777533322335331489998789983566999-99999746777-


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             00023666655554345565303798731667327876888898887448730003666666442201234138999886
Q gi|254781078|r  160 SLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGIN  239 (242)
Q Consensus       160 ~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~Gin  239 (242)
                           ..+.. .   -......-+.+.+|+.|.+++++++.+-|.|.+..+.+++...-     ....+.+.|++.++++
T Consensus       353 -----~~~~~-~---~~~p~~~~~~~s~G~~~~~~~~~~id~a~~y~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  418 (427)
T d1t16a_         353 -----PAQNR-S---ISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPY-----QFESEGKAWLFGTNFN  418 (427)
T ss_dssp             -----CTTTC-C---SSSCCCCEEEEEEEEEEESSSSEEEEEEEEEEEECCEEEEETTE-----EEEEEEEEEEEEEEEE
T ss_pred             -----CCCCC-C---CCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCC-----EEEEEEEEEEEEEEEE
T ss_conf             -----76554-6---43467898899988989848986999999999747531026730-----0478878999999999


Q ss_pred             EEC
Q ss_conf             209
Q gi|254781078|r  240 MHF  242 (242)
Q Consensus       240 Y~F  242 (242)
                      |+|
T Consensus       419 y~F  421 (427)
T d1t16a_         419 YAF  421 (427)
T ss_dssp             EEC
T ss_pred             EEE
T ss_conf             995


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Outer membrane protein transport protein
domain: Long-chain fatty acid transport protein FadL
species: Escherichia coli [TaxId: 562]