HHSEARCH alignment of GI: 254781078 and SCOP domain: d1uynx_

Alignment
>d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria meningitidis [TaxId: 487]}
Probab=97.35  E-value=0.0029  Score=33.97  Aligned_cols=151  Identities=12%  Similarity=0.052  Sum_probs=64.6

Q ss_pred             CEEEEEEEEEEEECC-E-EEEEEEEEEEECCCCC-----CCCCCCCC-EEEEEEEEEEEEEEC---C--EEEEEEEEEEE
Q ss_conf             504799886554457-7-9999988674047776-----43231010-036798999863314---4--03444401145
Q gi|254781078|r   87 NGLGIELGHNIQLED-F-VFGINCHTTAAKDDST-----FYRLKEKY-FIYGDVVLKAGYSVD---S--LLIYGMGGFGG  153 (242)
Q Consensus        87 ~g~G~~~GYN~Q~~~-~-V~GvE~d~~~~~~~~~-----~~~~~~k~-~~~Gsvr~r~Gya~~---~--~l~Y~~gG~A~  153 (242)
                      +..++.++..|++++ | |-+ ...+.+.+.+..     ....+.+. ...-.+.+++||.+.   .  +-||  .++.|
T Consensus        96 d~~~~~~y~~~~~~~~~y~~~-~l~~~~~~~~~~R~~~~~~~~~g~~~~~~~~~~~e~Gy~~~~~~~~~l~P~--~~l~y  172 (299)
T d1uynx_          96 DSISLFAGIRHDAGDIGYLKG-LFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVPFAATGDLTVE--GGLRY  172 (299)
T ss_dssp             EEEEEEEEEEEEETTTEEEEE-EEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEECCC---CCEEEEE--EEEEE
T ss_pred             EEEEEEEEEEEECCCCEEEEE-EEEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEEEECCCCEEEEEE--EEEEE
T ss_conf             747999999998488735788-872689732257730566410356731189999998677851896699998--77677


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCE--EEEEEEEEEECCCCEEECC----C---CCCCCCC
Q ss_conf             75301100023666655554345565303798731667327876--8888988874487300036----6---6666442
Q gi|254781078|r  154 AYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDI--SLSASYRYIPHHIHSVNNS----N---AKSDVER  224 (242)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nw--slraEY~Y~d~g~~~~~~~----~---~~~~~~~  224 (242)
                      .+++.+....... ...-...+.+....-..+|.-+++.+..++  .+++.|++ ++........    .   .......
T Consensus       173 ~~~~~d~y~E~g~-~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  250 (299)
T d1uynx_         173 DLLKQDAFAEKGS-ALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVER-DLNGRDYTVTGGFTGATAATGKTGA  250 (299)
T ss_dssp             EEEEECCEEEESC-TTCCEECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEE-ESSCCCCCCCC--------------
T ss_pred             EEEECCCEEEECC-CCCEEECCCCEEEEEEEEEEEEEEECCCCEEEEEEEEEEE-ECCCCCCCEEEEEECCCCCEEEEEC
T ss_conf             7885477077667-5311102653268889744799863377237889999999-7069982058998616875036723


Q ss_pred             CCCCCCEEEEEEEEEEEC
Q ss_conf             201234138999886209
Q gi|254781078|r  225 VDRKGNAHIASLGINMHF  242 (242)
Q Consensus       225 ~~~~~~~h~v~~GinY~F  242 (242)
                      .+.+.+.-.+.+|+++.+
T Consensus       251 ~~~~~~~~~~g~G~~~~~  268 (299)
T d1uynx_         251 RNMPHTRLVAGLGADVEF  268 (299)
T ss_dssp             ---CCEEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEEEEEEE
T ss_conf             578884299998599998


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Autotransporter
family: Autotransporter
domain: Translocator domain of NalP
species: Neisseria meningitidis [TaxId: 487]