HHSEARCH alignment of GI: 254781078 and SCOP domain: d3prna_

Alignment

Probab=96.78  E-value=0.011  Score=30.88  Aligned_cols=38  Identities=26%  Similarity=0.455  Sum_probs=29.0

Q ss_pred             EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             98731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      ..+.|++|.|+++.++.++|.+.+..                     .-...+||+|.|
T Consensus       252 ~~~lg~~Y~ls~~~~l~a~~~~~~~~---------------------~~~a~~Gv~~~F  289 (289)
T d3prna_         252 AYGIGADYQFAEGVKVSGSVQSGFAN---------------------ETVADVGVRFDF  289 (289)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECTTC---------------------CEEEEEEEEEEC
T ss_pred             EEEEEEEEECCCCEEEEEEEEEEECC---------------------CCEEEEEEEEEC
T ss_conf             89999999849984999999998089---------------------825725657769

SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Porin
domain: Porin
species: Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]