RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781078|ref|YP_003065491.1| hypothetical protein
CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62]
         (242 letters)



>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC
           micelles; NMR {Klebsiella pneumoniae} (A:)
          Length = 216

 Score = 48.3 bits (114), Expect = 9e-07
 Identities = 26/192 (13%), Positives = 45/192 (23%), Gaps = 18/192 (9%)

Query: 54  WSGNYVGLHISRLYETHPLADTINRKTYNSLL---PNGLGIELGHNIQLEDFVFGINCHT 110
            +  Y G  +               +  N        G G   G+ +             
Sbjct: 16  DNTWYAGGKLGWSQYHDTGFYGNGFQNNNGPTRNDQLGAGAFGGYQVNPYLGFEMGYDWL 75

Query: 111 TAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSK 170
                  +      K               D L IY   G                 +  
Sbjct: 76  GRMAYKGSVDNGAFKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYASTGVSRS 135

Query: 171 NAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGN 230
                      S V   G+++ V  DI+    Y+++          N   D   V  + +
Sbjct: 136 EHDTGV-----SPVFAGGVEWAVTRDIATRLEYQWV----------NNIGDAGTVGTRPD 180

Query: 231 AHIASLGINMHF 242
             + SLG++  F
Sbjct: 181 NGMLSLGVSYRF 192


>2f1v_A Outer membrane protein W; outer membrane protein beta
           barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A (A:)
          Length = 197

 Score = 45.1 bits (106), Expect = 8e-06
 Identities = 25/197 (12%), Positives = 51/197 (25%), Gaps = 16/197 (8%)

Query: 54  WSGNYVGLHISRLYETHPLADTINRKTYNSLLPNG--LGIELGHNIQLEDFVFGINCHTT 111
               ++    + +      A           + N   LG+   +    ++    +   T 
Sbjct: 3   AGEFFMRAGSATVRP-TEGAGGTLGSLGGFSVTNNTQLGLTFTYMAT-DNIGVELLAATP 60

Query: 112 AAKDDSTFYRLKEKYFIYGDVVLKAGYSV----DSLLIYGMGGFGGAYVIDSSLEKVESD 167
                 T          +    L A +           Y   G       D       +D
Sbjct: 61  FRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFD----NGFND 116

Query: 168 NSKNAKGRFDGHGSSV--VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERV 225
           + K A         S      +G+DY++N D  ++ S  Y+   I +  N       +  
Sbjct: 117 HGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYM--DIDTTANYKLGGAQQHD 174

Query: 226 DRKGNAHIASLGINMHF 242
             + +  +        F
Sbjct: 175 SVRLDPWVFMFSAGYRF 191


>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli}
           (A:)
          Length = 171

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 29/189 (15%), Positives = 50/189 (26%), Gaps = 22/189 (11%)

Query: 54  WSGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAA 113
            +  Y G  +             N  T+ +    G G   G+ +                
Sbjct: 4   DNTWYTGAKLGWSQYHDTGLINNNGPTHEN--KLGAGAFGGYQVNPYVGFEMGYDWLGRM 61

Query: 114 KDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAK 173
               +      K               D L IY   G                D   N  
Sbjct: 62  PYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRA----------DTYSNVY 111

Query: 174 GRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHI 233
           G+    G S V   G++Y +  +I+    Y++           N   D   +  + +  +
Sbjct: 112 GKNHDTGVSPVFAGGVEYAITPEIATRLEYQWT----------NNIGDAHTIGTRPDNGM 161

Query: 234 ASLGINMHF 242
            SLG++  F
Sbjct: 162 LSLGVSYRF 170


>1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents,
           lipids, micelles; NMR {Escherichia coli} (A:)
          Length = 148

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 11/121 (9%)

Query: 87  NGLGIELGHNIQLEDFVFGINC-HTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLI 145
              G  L +  + ++   G+    T   K  +       K   YG     A    D   I
Sbjct: 20  KMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASI 79

Query: 146 YGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRY 205
           YG+ G G                ++    + D        G GL +    +++L  SY  
Sbjct: 80  YGVVGVGYGKF----------QTTEYPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQ 129

Query: 206 I 206
            
Sbjct: 130 S 130


>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A
           {Neisseria meningitidis} (A:)
          Length = 155

 Score = 35.0 bits (80), Expect = 0.009
 Identities = 21/162 (12%), Positives = 43/162 (26%), Gaps = 25/162 (15%)

Query: 81  YNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSV 140
            +     G    +    ++ D  F ++          +      K +  G   +    + 
Sbjct: 19  SSLGSAKGFSPRISAGYRINDLRFAVDYTRYKNYKAPST---DFKLYSIGASAIYDFDTQ 75

Query: 141 DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLS 200
             +  Y                             F      + +  G+ Y V  ++ L 
Sbjct: 76  SPVKPYLGARLSLNRA----------SVDLGGSDSFSQTSIGLGVLTGVSYAVTPNVDLD 125

Query: 201 ASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242
           A YRY  ++I  VN            +   +   S G+ + F
Sbjct: 126 AGYRY--NYIGKVN----------TVKNVRSGELSAGVRVKF 155


>2jmm_A Outer membrane protein A; NMR {Escherichia coli} (A:)
          Length = 156

 Score = 29.6 bits (66), Expect = 0.42
 Identities = 22/157 (14%), Positives = 41/157 (26%), Gaps = 29/157 (18%)

Query: 86  PNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLI 145
             G G   G+ +   +   G         D       K +       +       D L I
Sbjct: 23  QLGAGAFGGYQV---NPYVGFE----MGYDWLGRMPRKAQGVQLTAKLGYPKLGTDDLDI 75

Query: 146 YGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRY 205
           Y   G        S  +     ++            S V   G++Y++   I+   + R 
Sbjct: 76  YTRLGGMVWRADTSDKDGNGYISAAE-------ASVSPVFAGGVEYVIRRRITPEIATRL 128

Query: 206 IPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242
                               +   +  + SLG++  F
Sbjct: 129 EYQWT---------------NNASDNGMLSLGVSYRF 150


>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain,
           DEP domain, DHEX domain, GGL domain, beta propeller,
           signaling protein; 1.95A {Mus musculus} (A:1-113)
          Length = 113

 Score = 28.0 bits (62), Expect = 1.1
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 90  GIELGHNIQLEDFVFGINC-HTTAAKDDSTFYRLKEKYF 127
              LG+ I    +++ +        K DS+ YR +  YF
Sbjct: 72  AQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYF 110


>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding,
          protein-peptide complex, actin-binding, ATP-binding,
          calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
          (A:)
          Length = 141

 Score = 26.5 bits (58), Expect = 3.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 33 KIDLFNEADNNVEYQDDEYGIWSGNYVGLHISRLYETHP 71
          +I     AD   + Q+ + G W  ++ G  I+R  E HP
Sbjct: 18 RIPFIRPADQYKDPQNKKKGWWYAHFDGPWIARQMELHP 56


>1hn0_A Chondroitin ABC lyase I; chondroitinase ABC I, chonroitin
           digestion, mechanism; 1.90A {Proteus vulgaris}
           (A:610-896)
          Length = 287

 Score = 25.6 bits (56), Expect = 6.9
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 165 ESDNSKNAKGRFDGHGSSVVLGIGLDYMVNY 195
           E  N  N  GR+  HG + ++  G      Y
Sbjct: 44  EIYNKDNRYGRYQSHGVAQIVSNGSQLSQGY 74


>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid
           binding protein; HET: LYS; 1.80A {Salmonella
           typhimurium} (A:1-88,A:189-239)
          Length = 139

 Score = 25.3 bits (55), Expect = 7.0
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 106 INCHTTAAKDDSTFYRLKEKYF---IYGD 131
            +   T  + D T+ ++ +KYF   +YGD
Sbjct: 110 FDKALTELRQDGTYDKMAKKYFDFNVYGD 138


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.140    0.414 

Gapped
Lambda     K      H
   0.267   0.0539    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,873,640
Number of extensions: 81200
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 22
Length of query: 242
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 156
Effective length of database: 2,048,819
Effective search space: 319615764
Effective search space used: 319615764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)