RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62] (242 letters) >2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae} (A:) Length = 216 Score = 48.3 bits (114), Expect = 9e-07 Identities = 26/192 (13%), Positives = 45/192 (23%), Gaps = 18/192 (9%) Query: 54 WSGNYVGLHISRLYETHPLADTINRKTYNSLL---PNGLGIELGHNIQLEDFVFGINCHT 110 + Y G + + N G G G+ + Sbjct: 16 DNTWYAGGKLGWSQYHDTGFYGNGFQNNNGPTRNDQLGAGAFGGYQVNPYLGFEMGYDWL 75 Query: 111 TAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSK 170 + K D L IY G + Sbjct: 76 GRMAYKGSVDNGAFKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYASTGVSRS 135 Query: 171 NAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGN 230 S V G+++ V DI+ Y+++ N D V + + Sbjct: 136 EHDTGV-----SPVFAGGVEWAVTRDIATRLEYQWV----------NNIGDAGTVGTRPD 180 Query: 231 AHIASLGINMHF 242 + SLG++ F Sbjct: 181 NGMLSLGVSYRF 192 >2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A (A:) Length = 197 Score = 45.1 bits (106), Expect = 8e-06 Identities = 25/197 (12%), Positives = 51/197 (25%), Gaps = 16/197 (8%) Query: 54 WSGNYVGLHISRLYETHPLADTINRKTYNSLLPNG--LGIELGHNIQLEDFVFGINCHTT 111 ++ + + A + N LG+ + ++ + T Sbjct: 3 AGEFFMRAGSATVRP-TEGAGGTLGSLGGFSVTNNTQLGLTFTYMAT-DNIGVELLAATP 60 Query: 112 AAKDDSTFYRLKEKYFIYGDVVLKAGYSV----DSLLIYGMGGFGGAYVIDSSLEKVESD 167 T + L A + Y G D +D Sbjct: 61 FRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFD----NGFND 116 Query: 168 NSKNAKGRFDGHGSSV--VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERV 225 + K A S +G+DY++N D ++ S Y+ I + N + Sbjct: 117 HGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYM--DIDTTANYKLGGAQQHD 174 Query: 226 DRKGNAHIASLGINMHF 242 + + + F Sbjct: 175 SVRLDPWVFMFSAGYRF 191 >1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} (A:) Length = 171 Score = 44.7 bits (105), Expect = 1e-05 Identities = 29/189 (15%), Positives = 50/189 (26%), Gaps = 22/189 (11%) Query: 54 WSGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAA 113 + Y G + N T+ + G G G+ + Sbjct: 4 DNTWYTGAKLGWSQYHDTGLINNNGPTHEN--KLGAGAFGGYQVNPYVGFEMGYDWLGRM 61 Query: 114 KDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAK 173 + K D L IY G D N Sbjct: 62 PYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRA----------DTYSNVY 111 Query: 174 GRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHI 233 G+ G S V G++Y + +I+ Y++ N D + + + + Sbjct: 112 GKNHDTGVSPVFAGGVEYAITPEIATRLEYQWT----------NNIGDAHTIGTRPDNGM 161 Query: 234 ASLGINMHF 242 SLG++ F Sbjct: 162 LSLGVSYRF 170 >1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents, lipids, micelles; NMR {Escherichia coli} (A:) Length = 148 Score = 37.7 bits (87), Expect = 0.001 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 11/121 (9%) Query: 87 NGLGIELGHNIQLEDFVFGINC-HTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLI 145 G L + + ++ G+ T K + K YG A D I Sbjct: 20 KMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASI 79 Query: 146 YGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRY 205 YG+ G G ++ + D G GL + +++L SY Sbjct: 80 YGVVGVGYGKF----------QTTEYPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQ 129 Query: 206 I 206 Sbjct: 130 S 130 >1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} (A:) Length = 155 Score = 35.0 bits (80), Expect = 0.009 Identities = 21/162 (12%), Positives = 43/162 (26%), Gaps = 25/162 (15%) Query: 81 YNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSV 140 + G + ++ D F ++ + K + G + + Sbjct: 19 SSLGSAKGFSPRISAGYRINDLRFAVDYTRYKNYKAPST---DFKLYSIGASAIYDFDTQ 75 Query: 141 DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLS 200 + Y F + + G+ Y V ++ L Sbjct: 76 SPVKPYLGARLSLNRA----------SVDLGGSDSFSQTSIGLGVLTGVSYAVTPNVDLD 125 Query: 201 ASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 A YRY ++I VN + + S G+ + F Sbjct: 126 AGYRY--NYIGKVN----------TVKNVRSGELSAGVRVKF 155 >2jmm_A Outer membrane protein A; NMR {Escherichia coli} (A:) Length = 156 Score = 29.6 bits (66), Expect = 0.42 Identities = 22/157 (14%), Positives = 41/157 (26%), Gaps = 29/157 (18%) Query: 86 PNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLI 145 G G G+ + + G D K + + D L I Sbjct: 23 QLGAGAFGGYQV---NPYVGFE----MGYDWLGRMPRKAQGVQLTAKLGYPKLGTDDLDI 75 Query: 146 YGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRY 205 Y G S + ++ S V G++Y++ I+ + R Sbjct: 76 YTRLGGMVWRADTSDKDGNGYISAAE-------ASVSPVFAGGVEYVIRRRITPEIATRL 128 Query: 206 IPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 + + + SLG++ F Sbjct: 129 EYQWT---------------NNASDNGMLSLGVSYRF 150 >2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, beta propeller, signaling protein; 1.95A {Mus musculus} (A:1-113) Length = 113 Score = 28.0 bits (62), Expect = 1.1 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Query: 90 GIELGHNIQLEDFVFGINC-HTTAAKDDSTFYRLKEKYF 127 LG+ I +++ + K DS+ YR + YF Sbjct: 72 AQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYF 110 >3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A (A:) Length = 141 Score = 26.5 bits (58), Expect = 3.5 Identities = 12/39 (30%), Positives = 19/39 (48%) Query: 33 KIDLFNEADNNVEYQDDEYGIWSGNYVGLHISRLYETHP 71 +I AD + Q+ + G W ++ G I+R E HP Sbjct: 18 RIPFIRPADQYKDPQNKKKGWWYAHFDGPWIARQMELHP 56 >1hn0_A Chondroitin ABC lyase I; chondroitinase ABC I, chonroitin digestion, mechanism; 1.90A {Proteus vulgaris} (A:610-896) Length = 287 Score = 25.6 bits (56), Expect = 6.9 Identities = 9/31 (29%), Positives = 13/31 (41%) Query: 165 ESDNSKNAKGRFDGHGSSVVLGIGLDYMVNY 195 E N N GR+ HG + ++ G Y Sbjct: 44 EIYNKDNRYGRYQSHGVAQIVSNGSQLSQGY 74 >1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} (A:1-88,A:189-239) Length = 139 Score = 25.3 bits (55), Expect = 7.0 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%) Query: 106 INCHTTAAKDDSTFYRLKEKYF---IYGD 131 + T + D T+ ++ +KYF +YGD Sbjct: 110 FDKALTELRQDGTYDKMAKKYFDFNVYGD 138 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.140 0.414 Gapped Lambda K H 0.267 0.0539 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,873,640 Number of extensions: 81200 Number of successful extensions: 147 Number of sequences better than 10.0: 1 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 22 Length of query: 242 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 156 Effective length of database: 2,048,819 Effective search space: 319615764 Effective search space used: 319615764 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (24.6 bits)