RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62] (242 letters) >d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]} Length = 148 Score = 44.2 bits (104), Expect = 1e-05 Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 11/121 (9%) Query: 87 NGLGIELGHNIQLEDFVFGINC-HTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLI 145 G L + + ++ G+ T K + K YG A D I Sbjct: 20 KMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASI 79 Query: 146 YGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRY 205 YG+ G G + ++ + D G GL + +++L SY Sbjct: 80 YGVVGVGYG----------KFQTTEYPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQ 129 Query: 206 I 206 Sbjct: 130 S 130 >d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]} Length = 171 Score = 34.4 bits (78), Expect = 0.009 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 11/106 (10%) Query: 137 GYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYD 196 G + + L Y + Y +D N G+ G S V G++Y + + Sbjct: 76 GVQLTAKLGYPITDDLDIYTR-LGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEYAITPE 134 Query: 197 ISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 I+ Y++ N D + + + + SLG++ F Sbjct: 135 IATRLEYQWT----------NNIGDAHTIGTRPDNGMLSLGVSYRF 170 >d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]} Length = 155 Score = 28.9 bits (64), Expect = 0.41 Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 22/102 (21%) Query: 141 DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLS 200 + Y F + + G+ Y V ++ L Sbjct: 76 SPVKPYLGARLSLNRA----------SVDLGGSDSFSQTSIGLGVLTGVSYAVTPNVDLD 125 Query: 201 ASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242 A YRY + + N +V + S G+ + F Sbjct: 126 AGYRY-----NYIGKVNTVKNV-------RSGELSAGVRVKF 155 >d1cb8a3 b.30.5.2 (A:336-599) Chondroitinase AC {Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]} Length = 264 Score = 26.8 bits (59), Expect = 1.6 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Query: 165 ESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIP 207 ES N +N GR+ G++ + G +Y Y+I + IP Sbjct: 36 ESGNKENLLGRYLSDGATNIQLRGPEY---YNIMPVWEWDKIP 75 >d1hn0a4 b.30.5.2 (A:619-899) Chondroitin ABC lyase I {Proteus vulgaris [TaxId: 585]} Length = 281 Score = 26.0 bits (57), Expect = 3.1 Identities = 9/31 (29%), Positives = 13/31 (41%) Query: 165 ESDNSKNAKGRFDGHGSSVVLGIGLDYMVNY 195 E N N GR+ HG + ++ G Y Sbjct: 35 EIYNKDNRYGRYQSHGVAQIVSNGSQLSQGY 65 >d1f1sa4 b.30.5.2 (A:620-911) Hyaluronate lyase {Streptococcus agalactiae [TaxId: 1311]} Length = 292 Score = 25.7 bits (56), Expect = 3.4 Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%) Query: 165 ESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIP 207 E N +N +G + G G + + N + + + Sbjct: 38 EGMNDENTRGWYTGDGMFYIYNSDQSHYSN-HFWPTVNPYKMA 79 >d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Length = 238 Score = 25.4 bits (54), Expect = 4.5 Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 3/23 (13%) Query: 112 AAKDDSTFYRLKEKYF---IYGD 131 + D T+ ++ +KYF +YGD Sbjct: 216 ELRQDGTYDKMAKKYFDFNVYGD 238 >d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]} Length = 126 Score = 24.8 bits (54), Expect = 6.7 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%) Query: 185 LGIGLDYMVNYDIS--LSASYRYIPHHIHSVNNSNAKSD 221 L LD+ +I+ L Y I + + V+ + + Sbjct: 65 LKSFLDHEKGKEIAKNLDTIYTIILNTLVKVDKTKEELQ 103 >d2f2lx1 d.118.1.1 (X:335-499) Peptidoglycan-recognition protein-LC {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 165 Score = 24.3 bits (52), Expect = 8.7 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%) Query: 204 RYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLG---INMHF 242 R + H + + + RV+ + H+ S G I +F Sbjct: 26 RVVISHTAAEGCESREVCSARVNVVQSFHMDSWGWDHIGYNF 67 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.140 0.414 Gapped Lambda K H 0.267 0.0504 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 917,792 Number of extensions: 41448 Number of successful extensions: 118 Number of sequences better than 10.0: 1 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 16 Length of query: 242 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 159 Effective length of database: 1,268,006 Effective search space: 201612954 Effective search space used: 201612954 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.3 bits)