RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781078|ref|YP_003065491.1| hypothetical protein
CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62]
         (242 letters)



>d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia
           coli [TaxId: 562]}
          Length = 148

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 11/121 (9%)

Query: 87  NGLGIELGHNIQLEDFVFGINC-HTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLI 145
              G  L +  + ++   G+    T   K  +       K   YG     A    D   I
Sbjct: 20  KMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASI 79

Query: 146 YGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRY 205
           YG+ G G            +   ++    + D        G GL +    +++L  SY  
Sbjct: 80  YGVVGVGYG----------KFQTTEYPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQ 129

Query: 206 I 206
            
Sbjct: 130 S 130


>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane
           domain {Escherichia coli [TaxId: 562]}
          Length = 171

 Score = 34.4 bits (78), Expect = 0.009
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 137 GYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYD 196
           G  + + L Y +      Y          +D   N  G+    G S V   G++Y +  +
Sbjct: 76  GVQLTAKLGYPITDDLDIYTR-LGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEYAITPE 134

Query: 197 ISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242
           I+    Y++           N   D   +  + +  + SLG++  F
Sbjct: 135 IATRLEYQWT----------NNIGDAHTIGTRPDNGMLSLGVSYRF 170


>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria
           meningitidis [TaxId: 487]}
          Length = 155

 Score = 28.9 bits (64), Expect = 0.41
 Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 22/102 (21%)

Query: 141 DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLS 200
             +  Y                             F      + +  G+ Y V  ++ L 
Sbjct: 76  SPVKPYLGARLSLNRA----------SVDLGGSDSFSQTSIGLGVLTGVSYAVTPNVDLD 125

Query: 201 ASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF 242
           A YRY     + +   N   +V        +   S G+ + F
Sbjct: 126 AGYRY-----NYIGKVNTVKNV-------RSGELSAGVRVKF 155


>d1cb8a3 b.30.5.2 (A:336-599) Chondroitinase AC {Pedobacter
           heparinus (Flavobacterium heparinum) [TaxId: 984]}
          Length = 264

 Score = 26.8 bits (59), Expect = 1.6
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 165 ESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIP 207
           ES N +N  GR+   G++ +   G +Y   Y+I     +  IP
Sbjct: 36  ESGNKENLLGRYLSDGATNIQLRGPEY---YNIMPVWEWDKIP 75


>d1hn0a4 b.30.5.2 (A:619-899) Chondroitin ABC lyase I {Proteus
           vulgaris [TaxId: 585]}
          Length = 281

 Score = 26.0 bits (57), Expect = 3.1
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 165 ESDNSKNAKGRFDGHGSSVVLGIGLDYMVNY 195
           E  N  N  GR+  HG + ++  G      Y
Sbjct: 35  EIYNKDNRYGRYQSHGVAQIVSNGSQLSQGY 65


>d1f1sa4 b.30.5.2 (A:620-911) Hyaluronate lyase {Streptococcus
           agalactiae [TaxId: 1311]}
          Length = 292

 Score = 25.7 bits (56), Expect = 3.4
 Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 165 ESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIP 207
           E  N +N +G + G G   +      +  N     + +   + 
Sbjct: 38  EGMNDENTRGWYTGDGMFYIYNSDQSHYSN-HFWPTVNPYKMA 79


>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO)
           protein {Salmonella typhimurium [TaxId: 90371]}
          Length = 238

 Score = 25.4 bits (54), Expect = 4.5
 Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 3/23 (13%)

Query: 112 AAKDDSTFYRLKEKYF---IYGD 131
             + D T+ ++ +KYF   +YGD
Sbjct: 216 ELRQDGTYDKMAKKYFDFNVYGD 238


>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 126

 Score = 24.8 bits (54), Expect = 6.7
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 185 LGIGLDYMVNYDIS--LSASYRYIPHHIHSVNNSNAKSD 221
           L   LD+    +I+  L   Y  I + +  V+ +  +  
Sbjct: 65  LKSFLDHEKGKEIAKNLDTIYTIILNTLVKVDKTKEELQ 103


>d2f2lx1 d.118.1.1 (X:335-499) Peptidoglycan-recognition protein-LC
           {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 165

 Score = 24.3 bits (52), Expect = 8.7
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 204 RYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLG---INMHF 242
           R +  H  +    + +    RV+   + H+ S G   I  +F
Sbjct: 26  RVVISHTAAEGCESREVCSARVNVVQSFHMDSWGWDHIGYNF 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.140    0.414 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 917,792
Number of extensions: 41448
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 16
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)