BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781078|ref|YP_003065491.1| hypothetical protein
CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62]
(242 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 242
Score = 489 bits (1260), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MNFNGYGALFFVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYGIWSGNYVG 60
MNFNGYGALFFVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYGIWSGNYVG
Sbjct: 1 MNFNGYGALFFVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYGIWSGNYVG 60
Query: 61 LHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFY 120
LHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFY
Sbjct: 61 LHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFY 120
Query: 121 RLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHG 180
RLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHG
Sbjct: 121 RLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHG 180
Query: 181 SSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINM 240
SSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINM
Sbjct: 181 SSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINM 240
Query: 241 HF 242
HF
Sbjct: 241 HF 242
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 26.2 bits (56), Expect = 0.49, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 148 MGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSV 183
+ F G + S+++K+ES ++ + GRFD S V
Sbjct: 366 LNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHV 401
>gi|254781128|ref|YP_003065541.1| hypothetical protein CLIBASIA_05150 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 225
Score = 26.2 bits (56), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 128 IYGDVVLKAGYSVDS--------LLIYGMGGFGGAYVIDSSLEKVES-DNSKNAKGRFDG 178
+ G ++ + G++ D+ LIYG FGGA + ++ VES D +K+
Sbjct: 116 VAGTLLFRTGFTFDNNNSSILQNTLIYG---FGGARI--RNIMSVESADTAKSTIRNIVA 170
Query: 179 HG-SSVVLGIGLDYMVNYDISLSASYRYIPHH 209
+G V+G+G++ + +S+ YRY+ +
Sbjct: 171 NGFLDKVIGVGIEKKLASMLSIRGEYRYVACY 202
>gi|254780967|ref|YP_003065380.1| probable multidrug resistance transporter protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 398
Score = 25.4 bits (54), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 11 FVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYG--IWSGNYVGLHISRLYE 68
FV+ +++++ +SL +D+ LP + +++ ++ YG + S +G I++++
Sbjct: 3 FVIVIAMLMAINSLGIDIILP----CLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFY 58
Query: 69 THPLADTINRK 79
PL+D RK
Sbjct: 59 -GPLSDRFGRK 68
>gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus Liberibacter asiaticus str. psy62]
Length = 473
Score = 23.9 bits (50), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 26 VDLYLP--RKIDLFNEADNNVEYQDDEYGIWSGNYVGLHISRLYETHPLADTINRKTYNS 83
+D+ +P R D FNE ++ + + G G HI LY L++TI+ +
Sbjct: 15 LDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETID-EIIKE 73
Query: 84 LLPNGLG 90
++P L
Sbjct: 74 IVPEILS 80
>gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster
biogenesis [Candidatus Liberibacter asiaticus str.
psy62]
Length = 406
Score = 23.1 bits (48), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 145 IYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYR 204
+YG G GG Y +S L +++ F G GS ++ + D + D+ YR
Sbjct: 227 LYGPSGIGGLYSKESRLNEMDP---------FMG-GSEMIADVTQDMVTYADL----PYR 272
Query: 205 Y---IPHHIHSVNNSNAKSDVERVDRKG 229
+ P ++ A VE++DRK
Sbjct: 273 FEPGTPPISQAIALGVALDYVEKIDRKS 300
>gi|254780741|ref|YP_003065154.1| carboxynorspermidine decarboxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 367
Score = 21.9 bits (45), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 94 GHNIQLEDFVFGINCHTTAAKD-DSTFYRLKEKYFIYGD 131
G+NI +++ GIN T A K+ D T ++E F Y D
Sbjct: 325 GYNINRKNWFNGINMPTIAVKNVDGTIKAIRE--FSYND 361
>gi|254780140|ref|YP_003064553.1| putative ABC transporter, substrate-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 452
Score = 21.9 bits (45), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 52 GIWSGNYVGLHISRLYETHPLADTINR 78
GI G VGL + + Y H LA + R
Sbjct: 62 GIPVGRIVGLFLDQEYPNHSLAKALIR 88
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.140 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,607
Number of Sequences: 1233
Number of extensions: 7624
Number of successful extensions: 22
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 10
length of query: 242
length of database: 328,796
effective HSP length: 71
effective length of query: 171
effective length of database: 241,253
effective search space: 41254263
effective search space used: 41254263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 37 (18.9 bits)