HHsearch alignment for GI: 254781079 and conserved domain: COG1353
>COG1353 Predicted CRISPR-associated polymerase [Defense mechanisms].
Probab=96.55 E-value=0.023 Score=37.49 Aligned_cols=79 Identities=25% Similarity=0.315 Sum_probs=62.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHC-CCC
Q ss_conf 3343036501686101234445899999863154067995689999999987799899899999999999999970-996
Q gi|254781079|r 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS-GRN 253 (266)
Q Consensus 175 ~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~-gkn 253 (266)
T Consensus 591 sGGDDvla~g~---~d~vld~a~el~~~F~~~~~~-----~~~~t~SaGi~i~h~k~Pl~~~~~~~~~~e~~AK~~r~k~ 662 (799)
T COG1353 591 SGGDDVLAVGP---WDDVLDFAKELRELFSEFTGK-----NPKLTLSAGIVIVHHKFPLYFALREARELEEEAKENRGKN 662 (799)
T ss_pred ECCCCEEEECC---HHHHHHHHHHHHHHHHHHHCC-----CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 66872478445---889999999999999998445-----8874157789980376809999999999999998740777
Q ss_pred EEEECCHH
Q ss_conf 89994021
Q gi|254781079|r 254 RVVCFSDI 261 (266)
Q Consensus 254 ~~~~~~~~ 261 (266)
T Consensus 663 ~i~~~~r~ 670 (799)
T COG1353 663 AIGLFDRS 670 (799)
T ss_pred EEEEECCC
T ss_conf 07997268