HHsearch alignment for GI: 254781079 and conserved domain: COG3706
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=100.00 E-value=2.3e-33 Score=273.93 Aligned_cols=169 Identities=37% Similarity=0.539 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 9999999999999610401050204899988877-------089725755442210001146886544431100000001
Q gi|254781079|r 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 (266)
Q Consensus 91 ~~l~~~~~~l~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~ 163 (266)
T Consensus 257 ~~L~~~~~~~~~l~~~D~LTGL~NRR~~~~~L~~~~~ra~~~~~pls~~m~DID~FK~iNDt~GH~~GDevLr~vA~~L~ 336 (435)
T COG3706 257 RQLRESLERLQELALVDGLTGLFNRRYFDEHLADLWKRALREGRPLSLLMLDIDDFKEINDTYGHDVGDEVLRQVARRLR 336 (435)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89999999998753244334766589999999999999985479716999713012413210188418899999999998
Q ss_pred CCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-EEEEEEEEEEEECCCCCC-HHHHHHHHH
Q ss_conf 111100000013343036501686101234445899999863154067995-689999999987799899-899999999
Q gi|254781079|r 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEP-ISTIIYRAD 241 (266)
Q Consensus 164 ~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~t~s~Gia~~~~~~~-~~~ll~~Ad 241 (266)
T Consensus 337 ~~vr~~Dl~aRyGGEEF~vvlp~t~~~~Ai~iaerIr~~i~~~~~~~~~~~~~~~~TiSiGVa~~~p~~~~~~~li~~AD 416 (435)
T COG3706 337 QTVRGLDLVARYGGEEFAVVLPDTDLEAAIAIAERIRQKINELPFVHELSREPLEVTISIGVAEGKPGEDSIEELLKRAD 416 (435)
T ss_pred HHCCCCCCCEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 64323330001277269999448887899999999999974178301466543279999988745778876999999999
Q ss_pred HHHHHHHHCCCCEEEECC
Q ss_conf 999999970996899940
Q gi|254781079|r 242 QALYVAKKSGRNRVVCFS 259 (266)
Q Consensus 242 ~Al~~AK~~gkn~~~~~~ 259 (266)
T Consensus 417 ~aLy~AK~sGRnrv~~~~ 434 (435)
T COG3706 417 KALYKAKASGRNRVVVKR 434 (435)
T ss_pred HHHHHHHHCCCCEEEECC
T ss_conf 998677754964289616