HHsearch alignment for GI: 254781079 and conserved domain: COG5001
>COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].
Probab=99.95 E-value=6.2e-26 Score=217.24 Aligned_cols=161 Identities=30% Similarity=0.497 Sum_probs=133.9
Q ss_pred HHHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHC
Q ss_conf 999610401050204899988877-------0897257554422100011468865444311000000011111000000
Q gi|254781079|r 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 (266)
Q Consensus 101 ~~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~ 173 (266)
T Consensus 225 ~~LAn~DsLTgLpNRr~ffa~Ldarlaaar~~g~rl~lgvIDLDgFKpvND~~GH~~GDrLLi~V~~RL~A~~~ap~~aa 304 (663)
T COG5001 225 DRLANLDSLTGLPNRRRFFAELDARLAAARQSGRRLVLGVIDLDGFKPVNDAFGHATGDRLLIEVGRRLKAFDGAPILAA 304 (663)
T ss_pred HHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 55534322128850667999877887421212871588998256770542001444125899999999876238737888
Q ss_pred CCCCCEEEEECCCCCHHHHH--HHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 13343036501686101234--44589999986315406799568999999998779-9899899999999999999970
Q gi|254781079|r 174 RLGGEEFAAAALGSSEQEAA--ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKS 250 (266)
Q Consensus 174 R~~gdeF~ill~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~ 250 (266)
T Consensus 305 RLGGDEFa~i~p~~~-dDA~rva~a~al~e~L~A-pY~-l~~~~v~vgASiGia~fP~~a~t~EqLf~RADyALYhAK~~ 381 (663)
T COG5001 305 RLGGDEFALIIPALE-DDALRVAGARALCESLQA-PYD-LRGVRVQVGASIGIAPFPSGADTSEQLFERADYALYHAKQN 381 (663)
T ss_pred HHCCCEEEEECCCCC-CHHHHHCCHHHHHHHHCC-CCC-CCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 706871489735789-678875046999998579-734-68862785112445326876652999997666899988752
Q ss_pred CCCEEEECCHHHCC
Q ss_conf 99689994021005
Q gi|254781079|r 251 GRNRVVCFSDIENN 264 (266)
Q Consensus 251 gkn~~~~~~~~~~~ 264 (266)
T Consensus 382 gkG~AvlFda~hE~ 395 (663)
T COG5001 382 GKGAAVLFDARHEA 395 (663)
T ss_pred CCCCEEEECHHHHH
T ss_conf 89856874335788