HHsearch alignment for GI: 254781079 and conserved domain: PRK09581

>PRK09581 pleD response regulator PleD; Reviewed.
Probab=100.00  E-value=5e-40  Score=324.71  Aligned_cols=167  Identities=35%  Similarity=0.545  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHHHHCCCHHCCCCHHHHHHHHH-------HCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf             9999999999961040105020489998887-------708972575544221000114688654443110000000111
Q gi|254781079|r   93 LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV  165 (266)
Q Consensus        93 l~~~~~~l~~~a~~D~LTgL~NR~~f~~~l~-------~~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~  165 (266)
T Consensus       281 lr~~~~~~~~lA~~D~LTgL~NR~~f~~~L~~~~~~a~r~~~~~all~lDlD~FK~INDt~GH~~GD~lL~~vA~rL~~~  360 (457)
T PRK09581        281 LRQNLEQSIEMAVTDGLTGLHNRRYFDMHLKQLIERANERGKPLSLMMLDIDHFKQVNDTYGHDAGDEVLREFAKRLRKN  360 (457)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99989999987365876671319999999999999999759938999998877428887669537799999999999987


Q ss_pred             CCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC-CEEEEEEEEEEEECC-CCCCHHHHHHHHHHH
Q ss_conf             110000001334303650168610123444589999986315406799-568999999998779-989989999999999
Q gi|254781079|r  166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQA  243 (266)
Q Consensus       166 ~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~A  243 (266)
T Consensus       361 ~R~~D~vaR~GGDEF~ilL~~~~~~~a~~vaeri~~~i~~~pf~~~~~~~~i~vT~SiGia~~~~~~~~~~~Ll~~AD~A  440 (457)
T PRK09581        361 IRGTDLIARYGGEEFVVVMPDTDIEVAIAVAERIRRKIAEEPFAISDGKERLNVTVSIGVAELRPSGESIEALIKRADKA  440 (457)
T ss_pred             CCCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             69877999615706899978999999999999999999747945548988999999999997479989899999999999


Q ss_pred             HHHHHHCCCCEEEECC
Q ss_conf             9999970996899940
Q gi|254781079|r  244 LYVAKKSGRNRVVCFS  259 (266)
Q Consensus       244 l~~AK~~gkn~~~~~~  259 (266)
T Consensus       441 mY~AK~~GRNrVv~~~  456 (457)
T PRK09581        441 LYEAKNTGRNRVVALA  456 (457)
T ss_pred             HHHHHHHCCCEEEECC
T ss_conf             9999962999699667