HHsearch alignment for GI: 254781079 and conserved domain: PRK09581
>PRK09581 pleD response regulator PleD; Reviewed.
Probab=100.00 E-value=5e-40 Score=324.71 Aligned_cols=167 Identities=35% Similarity=0.545 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHCCCHHCCCCHHHHHHHHH-------HCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 9999999999961040105020489998887-------708972575544221000114688654443110000000111
Q gi|254781079|r 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 (266)
Q Consensus 93 l~~~~~~l~~~a~~D~LTgL~NR~~f~~~l~-------~~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~ 165 (266)
T Consensus 281 lr~~~~~~~~lA~~D~LTgL~NR~~f~~~L~~~~~~a~r~~~~~all~lDlD~FK~INDt~GH~~GD~lL~~vA~rL~~~ 360 (457)
T PRK09581 281 LRQNLEQSIEMAVTDGLTGLHNRRYFDMHLKQLIERANERGKPLSLMMLDIDHFKQVNDTYGHDAGDEVLREFAKRLRKN 360 (457)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99989999987365876671319999999999999999759938999998877428887669537799999999999987
Q ss_pred CCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC-CEEEEEEEEEEEECC-CCCCHHHHHHHHHHH
Q ss_conf 110000001334303650168610123444589999986315406799-568999999998779-989989999999999
Q gi|254781079|r 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQA 243 (266)
Q Consensus 166 ~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~A 243 (266)
T Consensus 361 ~R~~D~vaR~GGDEF~ilL~~~~~~~a~~vaeri~~~i~~~pf~~~~~~~~i~vT~SiGia~~~~~~~~~~~Ll~~AD~A 440 (457)
T PRK09581 361 IRGTDLIARYGGEEFVVVMPDTDIEVAIAVAERIRRKIAEEPFAISDGKERLNVTVSIGVAELRPSGESIEALIKRADKA 440 (457)
T ss_pred CCCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 69877999615706899978999999999999999999747945548988999999999997479989899999999999
Q ss_pred HHHHHHCCCCEEEECC
Q ss_conf 9999970996899940
Q gi|254781079|r 244 LYVAKKSGRNRVVCFS 259 (266)
Q Consensus 244 l~~AK~~gkn~~~~~~ 259 (266)
T Consensus 441 mY~AK~~GRNrVv~~~ 456 (457)
T PRK09581 441 LYEAKNTGRNRVVALA 456 (457)
T ss_pred HHHHHHHCCCEEEECC
T ss_conf 9999962999699667