HHsearch alignment for GI: 254781079 and conserved domain: PRK11829
>PRK11829 biofilm formation regulator HmsP; Provisional.
Probab=99.96 E-value=1.7e-27 Score=229.16 Aligned_cols=184 Identities=17% Similarity=0.255 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHC------CCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 9999999999999---9999999999996104010502048999888770------897257554422100011468865
Q gi|254781079|r 79 SLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHP 149 (266)
Q Consensus 79 ~~~~~~~~~~~~~---~l~~~~~~l~~~a~~D~LTgL~NR~~f~~~l~~~------~~~~~l~~idid~fk~iNd~~G~~ 149 (266)
T Consensus 272 dde~g~l~~~ynrnqq~l~~~~~~~~~~~~r~p~t~lpn~~l~~~lleq~~~~~~~~~~~~l~~v~~~tl~~~~g~~~~~ 351 (728)
T PRK11829 272 DDELGVLVRNYNRNQQLLADAYADMGRISHRFPVTELPNRSLFISLLEKEIASSTRTDHFHLLVIGIETLQEVSGAMSEA 351 (728)
T ss_pred CCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHCCCCHH
T ss_conf 42365888741534899999999987541148754687178999999999872146773279998546678764223156
Q ss_pred CCCCCCCHHHCCCCCCCCCCHHHCCCCCCEEEEECCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC
Q ss_conf 4443110000000111110000001334303650168-610123444589999986315406799568999999998779
Q gi|254781079|r 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 (266)
Q Consensus 150 ~gD~~L~~va~~l~~~~~~~~~~~R~~gdeF~ill~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~ 228 (266)
T Consensus 352 q~~~Lllt~verl~~ci~~~~~laqls~~eFail~~~~~~P~~A~~lA~ril~~l~eP--~~~~~~~l~~sASIGIAlyP 429 (728)
T PRK11829 352 QHQQLLLTIVQRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLARRIMSQVTQP--LFFDEITLRPSASIGITRYQ 429 (728)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEECCC
T ss_conf 7888999999999852574555666267620220046798077999999999984588--43578734002689997589
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCC
Q ss_conf -989989999999999999997099689994021005
Q gi|254781079|r 229 -HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 (266)
Q Consensus 229 -~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~~~~~~~~ 264 (266)
T Consensus 430 ~DG~taE~LLRnADtAMY~AK~~GRN~~~FF~p~m~~ 466 (728)
T PRK11829 430 AQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIE 466 (728)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHH
T ss_conf 9988999999979999999998389828976888999