HHsearch alignment for GI: 254781079 and conserved domain: TIGR02577
>TIGR02577 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 family; InterPro: IPR013407 This entry is encoded within the CRISPR-associated RAMP module, a set of six genes found together in prokaryotic genomes . This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six genes (but not those encoding this entry) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This entry, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2..
Probab=94.44 E-value=0.09 Score=32.95 Aligned_cols=79 Identities=23% Similarity=0.189 Sum_probs=51.3
Q ss_pred HHCCCCCCEEEEECCC-C-CHHHHHHHHHHHHHHHHHCCCCCC-------------------CCCEEEEEEEEEEEECCC
Q ss_conf 0001334303650168-6-101234445899999863154067-------------------995689999999987799
Q gi|254781079|r 171 FVGRLGGEEFAAAALG-S-SEQEAAILANDLRKIIENSQINIS-------------------SGPSIHITISAGIAERCH 229 (266)
Q Consensus 171 ~~~R~~gdeF~ill~~-~-~~~~~~~~~~~l~~~l~~~~~~~~-------------------~~~~~~~t~s~Gia~~~~ 229 (266)
T Consensus 566 ~lvY~GGDDVLA~lP~~~naL~~A~~l~~~F~~~~~~~~~~~~~~~~e~E~~~~Y~~~KPs~~~~~~~~~~SaGl~I~H~ 645 (665)
T TIGR02577 566 VLVYAGGDDVLALLPVDTNALDVAKELRKEFSESLEKELGKERIKPYESEKVVRYQGEKPSEYTSLEEPTLSAGLVIVHH 645 (665)
T ss_pred EEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 78987355134552512568999999999999987530245677745775634426888876433567765267771111
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 89989999999999999997
Q gi|254781079|r 230 KEPISTIIYRADQALYVAKK 249 (266)
Q Consensus 230 ~~~~~~ll~~Ad~Al~~AK~ 249 (266)
T Consensus 646 k~PL~~ale~a~~llk~AK~ 665 (665)
T TIGR02577 646 KEPLYDALELARELLKRAKE 665 (665)
T ss_pred CCCHHHHHHHHHHHHHHHCC
T ss_conf 05589999999999997359