HHsearch alignment for GI: 254781079 and conserved domain: TIGR02578

>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family; InterPro: IPR013408 CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This family is encoded in a conserved gene cluster regularly found near CRISPR repeats and is designated Csm1, for CRISPR/Cas Subtype Mtube Protein 1. A typical example is TM1811 from Thermotoga maritima. .

Probab=95.44  E-value=0.059  Score=34.39  Aligned_cols=123  Identities=16%  Similarity=0.196  Sum_probs=76.1

Q ss_pred             CCCCEEEEEEECCCCCCC-CCCCCCCCCCC---------------CCCHHHCCCCCCCC---CCHHHCCC-----CCCEE
Q ss_conf             089725755442210001-14688654443---------------11000000011111---00000013-----34303
Q gi|254781079|r  125 YNEKLSIVFFDIDYFKQI-NDNFGHPVGDK---------------VIAFLSDQLVVVFG---TPMFVGRL-----GGEEF  180 (266)
Q Consensus       125 ~~~~~~l~~idid~fk~i-Nd~~G~~~gD~---------------~L~~va~~l~~~~~---~~~~~~R~-----~gdeF  180 (266)
T Consensus       289 ~~~~FlLv~gD~sGIQ~FIf~~~~~~~t~~~A~k~LrGRSf~i~LL~e~~a~~il~~l~kalGGdvL~~~N~~~~~GG~F  368 (802)
T TIGR02578       289 NEEKFLLVSGDLSGIQDFIFRQAKAEITSKGALKSLRGRSFYIELLAEVIAKEILEELNKALGGDVLTRTNILFEGGGHF  368 (802)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCEE
T ss_conf             78740788625323468998655555433234564310458899999999999999841330432233222211147727


Q ss_pred             EEECCCCCHHH--HHHHHHHHHHHHHHCCCCCCCC---CEEEEE----EEEEEEECC----CCCC--HHHHHHHHHHHHH
Q ss_conf             65016861012--3444589999986315406799---568999----999998779----9899--8999999999999
Q gi|254781079|r  181 AAAALGSSEQE--AAILANDLRKIIENSQINISSG---PSIHIT----ISAGIAERC----HKEP--ISTIIYRADQALY  245 (266)
Q Consensus       181 ~ill~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~---~~~~~t----~s~Gia~~~----~~~~--~~~ll~~Ad~Al~  245 (266)
T Consensus       369 ~Ll~~nte~~~~~~~~~~~~i~~~l~~~----~~g~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~D~f~~~~~~~~~kl~  444 (802)
T TIGR02578       369 YLLLPNTEEAREALEKLREEIEEELLKE----FRGKIAIDLALSASLELSLGIASVAFSENDLENDRFAKKRKKLHEKLE  444 (802)
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHHHH----CCCCEEEEHHHHCCCCCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             9953788567999999999999999882----464101000110124451035430200110013168999999999999


Q ss_pred             HHHHCC
Q ss_conf             999709
Q gi|254781079|r  246 VAKKSG  251 (266)
Q Consensus       246 ~AK~~g  251 (266)
T Consensus       445 ~~K~~~  450 (802)
T TIGR02578       445 KKKKRR  450 (802)
T ss_pred             HHHCCC
T ss_conf             986155