HHsearch alignment for GI: 254781079 and conserved domain: TIGR02578

>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family; InterPro: IPR013408 CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This family is encoded in a conserved gene cluster regularly found near CRISPR repeats and is designated Csm1, for CRISPR/Cas Subtype Mtube Protein 1. A typical example is TM1811 from Thermotoga maritima. .
Probab=93.45  E-value=0.25  Score=29.53  Aligned_cols=116  Identities=25%  Similarity=0.276  Sum_probs=75.4

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCCC-----CCCHHHCCCCC--------C----------CCCCHH-----------
Q ss_conf             8972575544221000114688654443-----11000000011--------1----------110000-----------
Q gi|254781079|r  126 NEKLSIVFFDIDYFKQINDNFGHPVGDK-----VIAFLSDQLVV--------V----------FGTPMF-----------  171 (266)
Q Consensus       126 ~~~~~l~~idid~fk~iNd~~G~~~gD~-----~L~~va~~l~~--------~----------~~~~~~-----------  171 (266)
T Consensus       651 ~k~l~~Lk~DvDnlG~iF~~g~~~~~~~~~~~sR~a~LS~~l~~FF~~~~~~l~~~~e~~~~~~GWddl~~~G~~~~~~~  730 (802)
T TIGR02578       651 EKKLGVLKMDVDNLGEIFASGLKRETRSLLAISRLATLSRQLELFFKLELNHLAEDKEIEREDLGWDDLEERGKERRKRN  730 (802)
T ss_pred             CCEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCC
T ss_conf             81688864236677899985047643002579999899877878898747997447530121267278987404411685


Q ss_pred             HCC--CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             001--334303650168610123444589999986315406799568999999998779989989999999999999997
Q gi|254781079|r  172 VGR--LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK  249 (266)
Q Consensus       172 ~~R--~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~  249 (266)
T Consensus       731 ~y~VYSGGDD~fl~---G~w~~~~~~a~~~~~~F~~ft~-----~~~~~T~S~G~~~~~~k~P~~~~a~~~Ee~l~~AK~  802 (802)
T TIGR02578       731 IYVVYSGGDDLFLV---GAWDAVLELASDIREKFEKFTC-----RQDKLTLSAGVVVVSPKFPVRKAARIAEEALEAAKE  802 (802)
T ss_pred             EEEEEECCCCCEEE---CCHHHHHHHHHHHHHHHHHHCC-----CCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             37999856421032---6638999999999998887235-----786400034126627884689999998899985069