HHsearch alignment for GI: 254781079 and conserved domain: TIGR02578
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family; InterPro: IPR013408 CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This family is encoded in a conserved gene cluster regularly found near CRISPR repeats and is designated Csm1, for CRISPR/Cas Subtype Mtube Protein 1. A typical example is TM1811 from Thermotoga maritima. .
Probab=93.45 E-value=0.25 Score=29.53 Aligned_cols=116 Identities=25% Similarity=0.276 Sum_probs=75.4
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCC-----CCCHHHCCCCC--------C----------CCCCHH-----------
Q ss_conf 8972575544221000114688654443-----11000000011--------1----------110000-----------
Q gi|254781079|r 126 NEKLSIVFFDIDYFKQINDNFGHPVGDK-----VIAFLSDQLVV--------V----------FGTPMF----------- 171 (266)
Q Consensus 126 ~~~~~l~~idid~fk~iNd~~G~~~gD~-----~L~~va~~l~~--------~----------~~~~~~----------- 171 (266)
T Consensus 651 ~k~l~~Lk~DvDnlG~iF~~g~~~~~~~~~~~sR~a~LS~~l~~FF~~~~~~l~~~~e~~~~~~GWddl~~~G~~~~~~~ 730 (802)
T TIGR02578 651 EKKLGVLKMDVDNLGEIFASGLKRETRSLLAISRLATLSRQLELFFKLELNHLAEDKEIEREDLGWDDLEERGKERRKRN 730 (802)
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 81688864236677899985047643002579999899877878898747997447530121267278987404411685
Q ss_pred HCC--CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 001--334303650168610123444589999986315406799568999999998779989989999999999999997
Q gi|254781079|r 172 VGR--LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 (266)
Q Consensus 172 ~~R--~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~ 249 (266)
T Consensus 731 ~y~VYSGGDD~fl~---G~w~~~~~~a~~~~~~F~~ft~-----~~~~~T~S~G~~~~~~k~P~~~~a~~~Ee~l~~AK~ 802 (802)
T TIGR02578 731 IYVVYSGGDDLFLV---GAWDAVLELASDIREKFEKFTC-----RQDKLTLSAGVVVVSPKFPVRKAARIAEEALEAAKE 802 (802)
T ss_pred EEEEEECCCCCEEE---CCHHHHHHHHHHHHHHHHHHCC-----CCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 37999856421032---6638999999999998887235-----786400034126627884689999998899985069