HHsearch alignment for GI: 254781079 and conserved domain: cd07556
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=97.17 E-value=0.00041 Score=50.81 Aligned_cols=98 Identities=20% Similarity=0.284 Sum_probs=77.6
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 72575544221000114688654443110000000111110-00000133430365016861012344458999998631
Q gi|254781079|r 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 (266)
Q Consensus 128 ~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~ 206 (266)
T Consensus 1 pvtVlF~DI~gfT~l~e~~~~~~~~~~L~~~~~~~~~~v~~~~g~v~k~~GD~~~a~fg~~~~~~a~~~a~~~~~~~~~~ 80 (133)
T cd07556 1 PVTILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSGLDHPAAAVAFAEDMREAVSAL 80 (133)
T ss_pred CEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98999983146238888599999999999999998888874297589970656899637610556999999999999997
Q ss_pred CCCCCCCCEEEEEEEEEEE
Q ss_conf 5406799568999999998
Q gi|254781079|r 207 QINISSGPSIHITISAGIA 225 (266)
Q Consensus 207 ~~~~~~~~~~~~t~s~Gia 225 (266)
T Consensus 81 ~~~~~~~l~iriGi~~G~v 99 (133)
T cd07556 81 NQSEGNPVRVRIGIHTGPV 99 (133)
T ss_pred HHCCCCCCCCCCEEEEEEE
T ss_conf 6301887664210263118