HHsearch alignment for GI: 254781079 and conserved domain: pfam05165
>pfam05165 GGDN GGDN family. I have named this protein family of unknown function GGDN after the most conserved motif. The proteins are 200-270 amino acids in length.
Probab=95.50 E-value=0.047 Score=35.14 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=70.6
Q ss_pred CCEEEEEEECCCCCC-CCCCCC-CCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 972575544221000-114688-654443110000000111110000001334303650168610123444589999986
Q gi|254781079|r 127 EKLSIVFFDIDYFKQ-INDNFG-HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 (266)
Q Consensus 127 ~~~~l~~idid~fk~-iNd~~G-~~~gD~~L~~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~l~ 204 (266)
T Consensus 126 ~~V~iaH~Dvnd~T~~~Td~~s~~dt~~~I~~~y~~l~~~~~~~g~l~ff~GGDN~m~~~~~~~~~~~~~~i~~i~~~~- 204 (246)
T pfam05165 126 GYVQIAHIDINNITGTITDIVSPVRTYYEVNDVMAKLMKVLEKIGALTQFIGGDNFMAPCNGIDAGIVLDINNSVKETV- 204 (246)
T ss_pred CCEEEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHC-
T ss_conf 7349999855354122204676679999999999999999987498899845866999789865778999999988652-
Q ss_pred HCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 3154067995689999999987799899899999999999999970996899
Q gi|254781079|r 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 (266)
Q Consensus 205 ~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~gkn~~~ 256 (266)
T Consensus 205 ----------~i~lkvGIG~g-----~ta~~A~~~At~aLe~iR~~~~~~~~ 241 (246)
T pfam05165 205 ----------DVDLKAGIGIA-----PTAEDALALADEALEEIRGKIVPGPV 241 (246)
T ss_pred ----------CCEEEEEECCC-----CCHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf ----------95278514568-----88899999999899999726888876