HHsearch alignment for GI: 254781079 and conserved domain: smart00267
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=99.97 E-value=1.3e-30 Score=252.85 Aligned_cols=155 Identities=35% Similarity=0.534 Sum_probs=142.5
Q ss_pred HHHHCCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCC
Q ss_conf 99610401050204899988877-------08972575544221000114688654443110000000111110000001
Q gi|254781079|r 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 (266)
Q Consensus 102 ~~a~~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R 174 (266)
T Consensus 1 ~lA~~D~lTgL~Nr~~f~~~l~~~~~~~~~~~~~~~li~i~id~f~~in~~~G~~~gd~~l~~~a~~l~~~~~~~~~~~R 80 (163)
T smart00267 1 RLAFRDPLTGLPNRRYFEEELEQELQRAQRQGSPFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCLRPGDLLAR 80 (163)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf 96888033485209999999999999888509958999998984578875338533566654201011025777778997
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 334303650168610123444589999986315406799568999999998779-9899899999999999999970996
Q gi|254781079|r 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253 (266)
Q Consensus 175 ~~gdeF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~gkn 253 (266)
T Consensus 81 ~~~d~F~ill~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~t~siGia~~~~~~~~~~~ll~~A~~Al~~Ak~~G~n 158 (163)
T smart00267 81 LGGDEFALLLPETSLEEAIALAERILQQLREP--IIIHGIPLYLTISIGVAAYPNPGEDAEDLLKRADTALYQAKKAGRN 158 (163)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH--HHCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 27998999978999999999999999999634--3026954889888999982799999999999999999999985999
Q ss_pred EEEEC
Q ss_conf 89994
Q gi|254781079|r 254 RVVCF 258 (266)
Q Consensus 254 ~~~~~ 258 (266)
T Consensus 159 ~~~~y 163 (163)
T smart00267 159 QVAVY 163 (163)
T ss_pred EEEEC
T ss_conf 79969