HHsearch alignment of GI: 254781079 and MMDB domain: 1jx4_A_1-10_78-182
>1jx4_A (A:1-10,A:78-182) DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase/DNA complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus}
Probab=92.29 E-value=0.15 Score=30.86 Aligned_cols=90 Identities=21% Similarity=0.218 Sum_probs=60.8
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCCC--CHHHHHHHHHHHHHHHHHCC
Q ss_conf 75544221000114688654443110000000111110-0000013343036501686--10123444589999986315
Q gi|254781079|r 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKIIENSQ 207 (266)
Q Consensus 131 l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~~--~~~~~~~~~~~l~~~l~~~~ 207 (266)
++++|.|..+. -..+++.+.+.+.. ...+-.+|-||+.+=+.+. ...++..++++|++.+.+.
T Consensus 3 ~~~~~~~~~e~-------------Y~~~S~~i~~il~~~~p~ve~~SiDE~fldvt~~~~~~~~~~~~a~~ir~~I~~~- 68 (115)
T 1jx4_A 3 VLFVDFDYKEV-------------YQQVSSRIXNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEK- 68 (115)
T ss_dssp EEEEEETTHHH-------------HHHHHHHHHHHHTTTCSCEEEEETTEEEEECTTTCSSHHHHHHHHHHHHHHHHHH-
T ss_pred EEEEECCCHHH-------------HHHHHHHHHHHHHCCCCCEEECCCCCEEEECCCCHHHCCHHHHHHHHHHHHHHHH-
T ss_conf 99994786899-------------9999999998875469818962897645312442011136999999999999998-
Q ss_pred CCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 40679956899999999877998998999999999999999709
Q gi|254781079|r 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 (266)
Q Consensus 208 ~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~g 251 (266)
..+++|+|++.. ...|..|...+|-+|
T Consensus 69 --------~gl~~SvGIa~n---------k~lAKiAs~~aKP~G 95 (115)
T 1jx4_A 69 --------EKITVTVGISKN---------KVFAKIAADXAKPNG 95 (115)
T ss_dssp --------HCCCEEEEEESS---------HHHHHHHHHHHCSSC
T ss_pred --------HCCCEEEEECCC---------HHHHHHHHHHCCCCC
T ss_conf --------699758852672---------677999997458774