HHsearch alignment of GI: 254781079 and MMDB domain: 3icl_A_

>3icl_A (A:) EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=99.92  E-value=1.5e-25  Score=213.79  Aligned_cols=158  Identities=27%  Similarity=0.402  Sum_probs=137.5

Q ss_pred             CCCHHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCC
Q ss_conf             0401050204899988877-------089725755442210001146886544431100000001111100000013343
Q gi|254781079|r  106 IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE  178 (266)
Q Consensus       106 ~D~LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gd  178 (266)
                      .||||||+||++|.+++++       .+++++|+++|||+||.||+.|||+.||++|+.+|++|+..+++++.++|++++
T Consensus         1 ~D~LTGL~Nr~~f~~~l~~~l~~~~~~~~~~~l~~i~id~f~~in~~~G~~~gd~~l~~~a~~l~~~~~~~~~~~r~~~~   80 (171)
T 3icl_A            1 XDTVTGLPNRQLFCDRLLQALAAHERDGNPVVLLFLDVDNFKSINDSLGHLVGDRLLRATAERIRTAVRDGDTVARIGGD   80 (171)
T ss_dssp             CCTTTCCCCHHHHHHHHHHHHHHCCCTTSCCEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHSCTTCEEEEETTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             94413723399999999999999885099289999805178999871199753047887656532035898889982598


Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             03650168610123444589999986315406799568999999998779-98998999999999999999709968999
Q gi|254781079|r  179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC  257 (266)
Q Consensus       179 eF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~  257 (266)
                      +|++++|..+..+......+........+. ..++....+++|+|++.++ ++.++++++.+||.||+.||++|+|++++
T Consensus        81 ~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~g~~~~~~~~~~~~~l~~~A~~Al~~Ak~~g~~~i~~  159 (171)
T 3icl_A           81 KFTILLNGAKDTLNGALVAQKILDGLAQPF-VFGAQQIVISVSIGIAVSPADGETXEQLLRNADTAXYHAKSRGKNNYQF  159 (171)
T ss_dssp             EEEEEESSCTTSTTTHHHHHHHHHHHTSCE-EETTEEECCCEEEEEEETTTTCSSHHHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             899996899868999999999999998764-3202465650689999836999989999999999999999849998999


Q ss_pred             CCHHHCC
Q ss_conf             4021005
Q gi|254781079|r  258 FSDIENN  264 (266)
Q Consensus       258 ~~~~~~~  264 (266)
                      |++--++
T Consensus       160 y~~~~~~  166 (171)
T 3icl_A          160 FSPELEH  166 (171)
T ss_dssp             CCC----
T ss_pred             ECHHHCC
T ss_conf             7757686