HHSEARCH alignment of GI: 254781079 and SCOP domain: d1w25a3

Alignment
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
Probab=99.94  E-value=6.1e-27  Score=221.45  Aligned_cols=152  Identities=32%  Similarity=0.502  Sum_probs=136.9

Q ss_pred             HHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCEEE
Q ss_conf             1050204899988877-------089725755442210001146886544431100000001111100000013343036
Q gi|254781079|r  109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA  181 (266)
Q Consensus       109 LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gdeF~  181 (266)
                      |||||||++|.+++++       .+.++++++++||+|+.||+.||++.||++|++++++|+..++++++++|+++|+|+
T Consensus         1 LTGL~Nr~~f~~~l~~~l~~~~~~~~~~~l~~i~id~~~~in~~~G~~~~d~ll~~~a~~l~~~~~~~d~~~R~~~~~F~   80 (162)
T d1w25a3           1 LTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFV   80 (162)
T ss_dssp             TTCCBCHHHHHHHHHHHHHHHHTSSCCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTSCTTSEEEECSSSEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCEEE
T ss_conf             98816889999999999999986599789999526311110443321112101356666566304876644414897689


Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             501686101234445899999863154067-99568999999998779-9899899999999999999970996899940
Q gi|254781079|r  182 AAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS  259 (266)
Q Consensus       182 ill~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~~~  259 (266)
                      +++|..+.+++...+.++...+.+.++... ....+.+++|+|++.++ ++.++++++.+|+.||++||++|||+||+++
T Consensus        81 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~siGia~~~~~~~~~~~ll~~A~~AL~~AK~~G~n~v~~~~  160 (162)
T d1w25a3          81 VIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKA  160 (162)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHHHTSCEECGGGSCEECCCEEEEEEECCSTTCCHHHHHHHHHHHHHHHHHTTSSCEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             87602320345667777788998640332232211023333765505899999999999999999999982999299826


Q ss_pred             H
Q ss_conf             2
Q gi|254781079|r  260 D  260 (266)
Q Consensus       260 ~  260 (266)
                      -
T Consensus       161 ~  161 (162)
T d1w25a3         161 A  161 (162)
T ss_dssp             C
T ss_pred             C
T ss_conf             8


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: GGDEF domain
domain: Response regulator PleD, C-terminal domain
species: Caulobacter crescentus [TaxId: 155892]