Query gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 266 No_of_seqs 128 out of 12768 Neff 8.5 Searched_HMMs 13730 Date Wed Jun 1 11:35:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781079.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1w25a3 d.58.29.2 (A:294-455) 99.9 6.1E-27 4.4E-31 221.5 9.8 152 109-260 1-161 (162) 2 d1azsa_ d.58.29.1 (A:) Adenyly 90.8 0.077 5.6E-06 30.0 2.9 128 127-257 13-153 (190) 3 d1azsb_ d.58.29.1 (B:) Adenyly 88.9 0.54 3.9E-05 23.6 6.0 127 128-257 6-163 (199) 4 d1fx2a_ d.58.29.1 (A:) Recepto 80.3 1.2 8.9E-05 20.8 4.5 74 126-202 10-84 (235) 5 d1im4a_ e.8.1.7 (A:) DinB homo 75.9 0.62 4.5E-05 23.1 1.9 63 171-251 102-167 (209) 6 d1wc1a_ d.58.29.1 (A:) Adenyla 72.7 2.4 0.00017 18.7 4.3 61 127-187 6-67 (197) 7 d1jx4a2 e.8.1.7 (A:1-240) DinB 54.3 4.5 0.00033 16.5 2.9 63 171-251 98-162 (240) 8 d1zeta2 e.8.1.7 (A:27-299) DNA 36.0 5.3 0.00039 16.0 0.9 27 192-227 150-176 (273) 9 d1xxaa_ d.74.2.1 (A:) C-termin 28.9 7.7 0.00056 14.8 0.7 44 157-201 26-69 (71) 10 d1jiha2 e.8.1.7 (A:1-389) DNA 28.1 6.1 0.00044 15.5 0.1 26 193-227 242-267 (389) 11 d2qfia1 d.52.9.1 (A:209-290) F 23.8 14 0.001 12.7 2.3 48 159-206 14-66 (82) 12 d1lxna_ d.58.48.1 (A:) Hypothe 23.1 15 0.0011 12.6 5.5 76 179-263 5-80 (99) 13 d1iwga2 d.58.44.1 (A:135-181,A 22.3 15 0.0011 12.5 3.5 63 155-217 35-98 (104) 14 d1ps9a1 c.1.4.1 (A:1-330) 2,4- 20.5 13 0.00098 12.9 0.7 56 143-200 180-238 (330) No 1 >d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]} Probab=99.94 E-value=6.1e-27 Score=221.45 Aligned_cols=152 Identities=32% Similarity=0.502 Sum_probs=136.9 Q ss_pred HHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCEEE Q ss_conf 1050204899988877-------089725755442210001146886544431100000001111100000013343036 Q gi|254781079|r 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 (266) Q Consensus 109 LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gdeF~ 181 (266) |||||||++|.+++++ .+.++++++++||+|+.||+.||++.||++|++++++|+..++++++++|+++|+|+ T Consensus 1 LTGL~Nr~~f~~~l~~~l~~~~~~~~~~~l~~i~id~~~~in~~~G~~~~d~ll~~~a~~l~~~~~~~d~~~R~~~~~F~ 80 (162) T d1w25a3 1 LTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFV 80 (162) T ss_dssp TTCCBCHHHHHHHHHHHHHHHHTSSCCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTSCTTSEEEECSSSEEE T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCEEE T ss_conf 98816889999999999999986599789999526311110443321112101356666566304876644414897689 Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCCCEEEECC Q ss_conf 501686101234445899999863154067-99568999999998779-9899899999999999999970996899940 Q gi|254781079|r 182 AAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 (266) Q Consensus 182 ill~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~~~ 259 (266) +++|..+.+++...+.++...+.+.++... ....+.+++|+|++.++ ++.++++++.+|+.||++||++|||+||+++ T Consensus 81 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~siGia~~~~~~~~~~~ll~~A~~AL~~AK~~G~n~v~~~~ 160 (162) T d1w25a3 81 VIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKA 160 (162) T ss_dssp EEETTCCHHHHHHHHHHHHHHHHTSCEECGGGSCEECCCEEEEEEECCSTTCCHHHHHHHHHHHHHHHHHTTSSCEEECC T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 87602320345667777788998640332232211023333765505899999999999999999999982999299826 Q ss_pred H Q ss_conf 2 Q gi|254781079|r 260 D 260 (266) Q Consensus 260 ~ 260 (266) - T Consensus 161 ~ 161 (162) T d1w25a3 161 A 161 (162) T ss_dssp C T ss_pred C T ss_conf 8 No 2 >d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis familiaris) [TaxId: 9615]} Probab=90.81 E-value=0.077 Score=30.00 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=73.2 Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCCC-----CHHHHHHHHHHHH Q ss_conf 972575544221000114688654443110000000111110-0000013343036501686-----1012344458999 Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGS-----SEQEAAILANDLR 200 (266) Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~~-----~~~~~~~~~~~l~ 200 (266) +..+++++||-+|..+-+.++++.--++|..+-..+...+.+ +..+.++-||.+.+.++.. ..+.+...+..+. T Consensus 13 ~~Vtvlf~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~~~k~~GD~~~a~f~~~~~~~d~~~~a~~~a~~~~ 92 (190) T d1azsa_ 13 DNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDMI 92 (190) T ss_dssp EEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHHHHHHHHHH T ss_pred CCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHH T ss_conf 96899999848736988769999999999999999722000367411102125799996477764321057788888899 Q ss_pred HHHHHCCCCCCCCCEEEEEEEEEEEEC---CC-CCC---HHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 998631540679956899999999877---99-899---8999999999999999709968999 Q gi|254781079|r 201 KIIENSQINISSGPSIHITISAGIAER---CH-KEP---ISTIIYRADQALYVAKKSGRNRVVC 257 (266) Q Consensus 201 ~~l~~~~~~~~~~~~~~~t~s~Gia~~---~~-~~~---~~~ll~~Ad~Al~~AK~~gkn~~~~ 257 (266) +.+............+++.++.|-+.. .. ..+ ..+.+..|..-...++ .+++.+ T Consensus 93 ~~~~~~~~~~~~~l~~riGih~G~v~~g~~G~~~~~~~~~G~~Vn~Aarl~~~a~---~~~ilv 153 (190) T d1azsa_ 93 EAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGK---AGRIHI 153 (190) T ss_dssp HHHHHHHHHHCSCCEEEEEEEEEEEEEEECSSSSCCCEEESHHHHHHHHHHHTCC---TTSEEE T ss_pred HHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEECCCEEHHHHHHCCCC---CCEEEE T ss_conf 9986301124665325777743023455455423224452461016778762588---997998 No 3 >d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=88.92 E-value=0.54 Score=23.57 Aligned_cols=127 Identities=11% Similarity=0.061 Sum_probs=61.5 Q ss_pred CEEEEEEECCCCCCCCCCCCCC-CCCCCCCHHHCC---CCCCC----CCCHHHCCCCCCEEEEECC--CCCH-------- Q ss_conf 7257554422100011468865-444311000000---01111----1000000133430365016--8610-------- Q gi|254781079|r 128 KLSIVFFDIDYFKQINDNFGHP-VGDKVIAFLSDQ---LVVVF----GTPMFVGRLGGEEFAAAAL--GSSE-------- 189 (266) Q Consensus 128 ~~~l~~idid~fk~iNd~~G~~-~gD~~L~~va~~---l~~~~----~~~~~~~R~~gdeF~ill~--~~~~-------- 189 (266) +.++++.||-+|..+-+.++-. .+++++..+-+. +...+ +.+..+-++-||.+.+++. ..+. T Consensus 6 ~vtvlF~Di~gfT~l~~~~~~~~~~~~~~~~Ln~~~~~fd~~~~~~~~~g~~~~k~iGD~~~a~~g~~~~~~~~~a~~~~ 85 (199) T d1azsb_ 6 CVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPE 85 (199) T ss_dssp EEEEEEEECTTHHHHCCCCTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEESSSCC---------- T ss_pred CEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCHH T ss_conf 48999997479738897477546999999999999999999999986368479998357489996688876544421467 Q ss_pred ------HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC---CCC----CCHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf ------12344458999998631540679956899999999877---998----99899999999999999970996899 Q gi|254781079|r 190 ------QEAAILANDLRKIIENSQINISSGPSIHITISAGIAER---CHK----EPISTIIYRADQALYVAKKSGRNRVV 256 (266) Q Consensus 190 ------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~---~~~----~~~~~ll~~Ad~Al~~AK~~gkn~~~ 256 (266) ..+...+..+.+.+.+..........+++.++.|-+.. ... +-..+.+..|..-...+ ..++|. T Consensus 86 ~~~~~~~~av~~a~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~Gv~g~~~~~y~v~Gd~VN~AaRle~~a---~~g~I~ 162 (199) T d1azsb_ 86 RQYMHIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTG---VLDKIQ 162 (199) T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTC---CTTEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC---CCCEEE T ss_conf 78986999999999999876530136899734886640127546122156643325065899999998358---998699 Q ss_pred E Q ss_conf 9 Q gi|254781079|r 257 C 257 (266) Q Consensus 257 ~ 257 (266) + T Consensus 163 v 163 (199) T d1azsb_ 163 V 163 (199) T ss_dssp E T ss_pred E T ss_conf 8 No 4 >d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase {Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]} Probab=80.27 E-value=1.2 Score=20.84 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=46.6 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 8972575544221000114688654443110000000111110-0000013343036501686101234445899999 Q gi|254781079|r 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 (266) Q Consensus 126 ~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~ 202 (266) .++.++++.||.+|..+-+..+.. -.++|...-..+...+.. +..+..+-||-|.++++. +.++...+..+... T Consensus 10 ~~~vtilF~DI~gfT~l~e~~p~~-~~~~l~~~~~~~~~~i~~~~G~~~k~~GD~~l~~F~~--p~~a~~~A~~~q~~ 84 (235) T d1fx2a_ 10 TDPVTLIFTDIESSTALWAAHPDL-MPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKS--PFAAVQLAQELQLC 84 (235) T ss_dssp TSCEEEEEEEETTHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESC--HHHHHHHHHHHHHH T ss_pred CCCEEEEEEECCCHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECC--CCHHHHHHHHHHHH T ss_conf 787999998613859999859999-9999999999999999974988999658827885079--73478999999999 No 5 >d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=75.86 E-value=0.62 Score=23.09 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=41.0 Q ss_pred HHCCCCCCEEEEECCCCC---HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH Q ss_conf 000133430365016861---01234445899999863154067995689999999987799899899999999999999 Q gi|254781079|r 171 FVGRLGGEEFAAAALGSS---EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 (266) Q Consensus 171 ~~~R~~gdeF~ill~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~A 247 (266) .+-+++-||+.+=+.+.. ..++..++++|++.+.+. ..+++|+||+.. -++ |..|...+ T Consensus 102 ~ve~~SiDE~fldlt~~~~~~~~~~~~~a~~ir~~I~~~---------~gl~~SiGIa~n-------k~l--AKias~~~ 163 (209) T d1im4a_ 102 KIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEK---------EKITVTVGVAPN-------KIL--AKIIADKS 163 (209) T ss_dssp EEEEEETTEEEEECTTTTTTCHHHHHHHHHHHHHHHHHH---------HCCCEEEEEESS-------HHH--HHHHHHHT T ss_pred CEEECCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHH---------CCCCEEECCCCC-------HHH--HHHHHHCC T ss_conf 153114441356511431110104899999999999873---------487554430341-------565--89888626 Q ss_pred HHCC Q ss_conf 9709 Q gi|254781079|r 248 KKSG 251 (266) Q Consensus 248 K~~g 251 (266) |..| T Consensus 164 KP~g 167 (209) T d1im4a_ 164 KPNG 167 (209) T ss_dssp CSSC T ss_pred CCCE T ss_conf 9856 No 6 >d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis [TaxId: 118562]} Probab=72.74 E-value=2.4 Score=18.65 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=39.8 Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC-CCCHHHCCCCCCEEEEECCCC Q ss_conf 9725755442210001146886544431100000001111-100000013343036501686 Q gi|254781079|r 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGS 187 (266) Q Consensus 127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~-~~~~~~~R~~gdeF~ill~~~ 187 (266) +..++++.||-+|..+-+.++.+.-=++|..+-..+...+ ..+..+.++-||.+.++++.. T Consensus 6 r~vtvlF~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~~~f~~~ 67 (197) T d1wc1a_ 6 RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAP 67 (197) T ss_dssp EEEEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSS T ss_pred EEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCEEEEEECCC T ss_conf 79999999917878998769999999999999999876676533322122111689983487 No 7 >d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Probab=54.33 E-value=4.5 Score=16.50 Aligned_cols=63 Identities=22% Similarity=0.228 Sum_probs=40.0 Q ss_pred HHCCCCCCEEEEECCCCC--HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHH Q ss_conf 000133430365016861--012344458999998631540679956899999999877998998999999999999999 Q gi|254781079|r 171 FVGRLGGEEFAAAALGSS--EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 (266) Q Consensus 171 ~~~R~~gdeF~ill~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK 248 (266) .+..++-||..+=+.+.. ...+..++.+|+..+.+.. .+++|+|++.. -++ |..|...+| T Consensus 98 ~ve~~siDE~~ldl~~~~~~~~~~~~~a~~i~~~i~~~~---------g~~~siGia~n-------k~l--AKlAs~~~K 159 (240) T d1jx4a2 98 KIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKE---------KITVTVGISKN-------KVF--AKIAADMAK 159 (240) T ss_dssp CEEEEETTEEEEECTTTCSSHHHHHHHHHHHHHHHHHHH---------CCCEEEEEESS-------HHH--HHHHHHHHC T ss_pred EEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH---------CCCCCEEECCH-------HHH--HHHHHHHCC T ss_conf 466414202333045641001218999999999898763---------25310134131-------668--888750046 Q ss_pred HCC Q ss_conf 709 Q gi|254781079|r 249 KSG 251 (266) Q Consensus 249 ~~g 251 (266) ..| T Consensus 160 P~g 162 (240) T d1jx4a2 160 PNG 162 (240) T ss_dssp SSC T ss_pred CCE T ss_conf 623 No 8 >d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Probab=35.97 E-value=5.3 Score=15.97 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC Q ss_conf 344458999998631540679956899999999877 Q gi|254781079|r 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 (266) Q Consensus 192 ~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~ 227 (266) +..++++|++.+.+. ..+++|+||+.. T Consensus 150 ~~~~a~~ir~~I~~~---------~g~~~svGIa~n 176 (273) T d1zeta2 150 GSQIAAEMREAMYNQ---------LGLTGCAGVASN 176 (273) T ss_dssp HHHHHHHHHHHHHHH---------HCCCEEEEEESS T ss_pred HHHHHHHHHHHHHHH---------HCCCEEEEECCC T ss_conf 999999999999998---------599758614672 No 9 >d1xxaa_ d.74.2.1 (A:) C-terminal domain of arginine repressor {Escherichia coli [TaxId: 562]} Probab=28.95 E-value=7.7 Score=14.76 Aligned_cols=44 Identities=9% Similarity=0.100 Sum_probs=24.3 Q ss_pred HHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH Q ss_conf 000000111110000001334303650168610123444589999 Q gi|254781079|r 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 (266) Q Consensus 157 ~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~ 201 (266) .+|..|...--++.+++-++||+=+++++ .+.+++..+.++|++ T Consensus 26 ~va~~iD~~~~~e~I~GTiAGdDTvlvi~-~~~~~a~~l~~~i~~ 69 (71) T d1xxaa_ 26 LIARLLDSLGKAEGILGTIAGDDTIFTTP-ANGFTVKDLYEAILE 69 (71) T ss_dssp HHHHHHTTTTTTTTEEEEEECSSEEEEEE-CTTCCHHHHHHHHHT T ss_pred HHHHHHHCCCCCCCEEEEECCCCEEEEEE-CCHHHHHHHHHHHHH T ss_conf 99999972799886899972599999997-888999999999997 No 10 >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=28.10 E-value=6.1 Score=15.53 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=17.7 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC Q ss_conf 44458999998631540679956899999999877 Q gi|254781079|r 193 AILANDLRKIIENSQINISSGPSIHITISAGIAER 227 (266) Q Consensus 193 ~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~ 227 (266) ..++.+|+..+.+. ..+|+|+||+.. T Consensus 242 ~~ia~~IR~~I~~e---------tGlt~S~GIa~N 267 (389) T d1jiha2 242 SQVCKGIRDSIKDI---------LGYTTSCGLSST 267 (389) T ss_dssp HHHHHHHHHHHHHH---------HCCCCEEEEESS T ss_pred HHHHHHHHHHHHHH---------HCCCCEECCCCC T ss_conf 99999999999998---------699843024552 No 11 >d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]} Probab=23.77 E-value=14 Score=12.69 Aligned_cols=48 Identities=15% Similarity=0.046 Sum_probs=31.3 Q ss_pred HCCCCCCCCCCHHHCCCCCCEEEE-----ECCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 000011111000000133430365-----016861012344458999998631 Q gi|254781079|r 159 SDQLVVVFGTPMFVGRLGGEEFAA-----AALGSSEQEAAILANDLRKIIENS 206 (266) Q Consensus 159 a~~l~~~~~~~~~~~R~~gdeF~i-----ll~~~~~~~~~~~~~~l~~~l~~~ 206 (266) +.......+-+++-.|..|..+.+ +-++.+..++..+++++.+.+.+. T Consensus 14 i~~~~gV~~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~I~~~ie~~l~~~ 66 (82) T d2qfia1 14 VTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRR 66 (82) T ss_dssp HTTSSSCSCBCCCCCCTTSCCBCCBSCTTSTTTCSCGGGHHHHHHHHHHTTSS T ss_pred HHCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH T ss_conf 97199923454899999689099999999899999999999999999999976 No 12 >d1lxna_ d.58.48.1 (A:) Hypothetical protein MTH1187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=23.08 E-value=15 Score=12.60 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=36.2 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 03650168610123444589999986315406799568999999998779989989999999999999997099689994 Q gi|254781079|r 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 (266) Q Consensus 179 eF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~~ 258 (266) ||+++--++.......+..+..+.+++. |....++ +.|-.. +|+++++++.-...+-...-+.|-+|+... T Consensus 5 ei~v~P~gt~~~svs~yVa~~i~~i~~s------Gl~y~~~-pmgT~I--Eg~d~dev~~~v~~~he~~~~~G~~RV~t~ 75 (99) T d1lxna_ 5 ELTVIPLGTCSTSLSSYVAAAVEALKKL------NVRYEIS-GMGTLL--EAEDLDELMEAVKAAHEAVLQAGSDRVYTT 75 (99) T ss_dssp EEEEEESSCSSSCCHHHHHHHHHHHTTS------SCEEEEE-TTEEEE--EESSHHHHHHHHHHHHHHHHHTTCSEEEEE T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHC------CCCEEEC-CCCCEE--CCCCHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 9999757999987899999999999975------9975746-880353--379899999999999999997799869999 Q ss_pred CHHHC Q ss_conf 02100 Q gi|254781079|r 259 SDIEN 263 (266) Q Consensus 259 ~~~~~ 263 (266) =-+++ T Consensus 76 iKId~ 80 (99) T d1lxna_ 76 LKIDD 80 (99) T ss_dssp EEEEE T ss_pred EEEEC T ss_conf 99760 No 13 >d1iwga2 d.58.44.1 (A:135-181,A:274-330) Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia coli [TaxId: 562]} Probab=22.28 E-value=15 Score=12.49 Aligned_cols=63 Identities=13% Similarity=0.041 Sum_probs=38.3 Q ss_pred CCHHHCCCCCCCCCCHHHCCCCCCEEEEE-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEE Q ss_conf 10000000111110000001334303650-1686101234445899999863154067995689 Q gi|254781079|r 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 (266) Q Consensus 155 L~~va~~l~~~~~~~~~~~R~~gdeF~il-l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 217 (266) |+.||+.=.....+.+..+|+.|..=+.+ +...+...+...++.+++.+.+.+...+.|..+. T Consensus 35 l~DVA~V~~~g~~~~~~~~~~nG~~av~l~I~~~~gaN~i~v~~~V~~~l~el~~~lP~Gv~~~ 98 (104) T d1iwga2 35 TSGVGDVQLFGSQNYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIV 98 (104) T ss_dssp STTCSEEEESSCCCCSCEEEETTEEEEEEEEECCTTCCTHHHHHHHHHHTTTTGGGCCTTEEEE T ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 5584589972655776988652210000113326887699999999999999872098980998 No 14 >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=20.45 E-value=13 Score=12.89 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=29.5 Q ss_pred CCCCCCCCCC--CCCCHHHCCCCCCCCCCH-HHCCCCCCEEEEECCCCCHHHHHHHHHHHH Q ss_conf 1468865444--311000000011111000-000133430365016861012344458999 Q gi|254781079|r 143 NDNFGHPVGD--KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR 200 (266) Q Consensus 143 Nd~~G~~~gD--~~L~~va~~l~~~~~~~~-~~~R~~gdeF~ill~~~~~~~~~~~~~~l~ 200 (266) +|.||-..-+ +++.+|-+.+++.++++- +..|++++|+.- .+.+.++...+++.+. T Consensus 180 tDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~--~g~~~~~~~~~~~~l~ 238 (330) T d1ps9a1 180 SDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVE--DGGTFAETVELAQAIE 238 (330) T ss_dssp CSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCST--TCCCHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC--CCCCHHHHHHHHHHHH T ss_conf 5667724766447799999999997388760575156100146--8888899999999999 Done!