Query         gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 266
No_of_seqs    128 out of 12768
Neff          8.5 
Searched_HMMs 13730
Date          Wed Jun  1 11:35:58 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781079.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1w25a3 d.58.29.2 (A:294-455)   99.9 6.1E-27 4.4E-31  221.5   9.8  152  109-260     1-161 (162)
  2 d1azsa_ d.58.29.1 (A:) Adenyly  90.8   0.077 5.6E-06   30.0   2.9  128  127-257    13-153 (190)
  3 d1azsb_ d.58.29.1 (B:) Adenyly  88.9    0.54 3.9E-05   23.6   6.0  127  128-257     6-163 (199)
  4 d1fx2a_ d.58.29.1 (A:) Recepto  80.3     1.2 8.9E-05   20.8   4.5   74  126-202    10-84  (235)
  5 d1im4a_ e.8.1.7 (A:) DinB homo  75.9    0.62 4.5E-05   23.1   1.9   63  171-251   102-167 (209)
  6 d1wc1a_ d.58.29.1 (A:) Adenyla  72.7     2.4 0.00017   18.7   4.3   61  127-187     6-67  (197)
  7 d1jx4a2 e.8.1.7 (A:1-240) DinB  54.3     4.5 0.00033   16.5   2.9   63  171-251    98-162 (240)
  8 d1zeta2 e.8.1.7 (A:27-299) DNA  36.0     5.3 0.00039   16.0   0.9   27  192-227   150-176 (273)
  9 d1xxaa_ d.74.2.1 (A:) C-termin  28.9     7.7 0.00056   14.8   0.7   44  157-201    26-69  (71)
 10 d1jiha2 e.8.1.7 (A:1-389) DNA   28.1     6.1 0.00044   15.5   0.1   26  193-227   242-267 (389)
 11 d2qfia1 d.52.9.1 (A:209-290) F  23.8      14   0.001   12.7   2.3   48  159-206    14-66  (82)
 12 d1lxna_ d.58.48.1 (A:) Hypothe  23.1      15  0.0011   12.6   5.5   76  179-263     5-80  (99)
 13 d1iwga2 d.58.44.1 (A:135-181,A  22.3      15  0.0011   12.5   3.5   63  155-217    35-98  (104)
 14 d1ps9a1 c.1.4.1 (A:1-330) 2,4-  20.5      13 0.00098   12.9   0.7   56  143-200   180-238 (330)

No 1  
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
Probab=99.94  E-value=6.1e-27  Score=221.45  Aligned_cols=152  Identities=32%  Similarity=0.502  Sum_probs=136.9

Q ss_pred             HHCCCCHHHHHHHHHH-------CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCEEE
Q ss_conf             1050204899988877-------089725755442210001146886544431100000001111100000013343036
Q gi|254781079|r  109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA  181 (266)
Q Consensus       109 LTgL~NR~~f~~~l~~-------~~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~~~~~~R~~gdeF~  181 (266)
                      |||||||++|.+++++       .+.++++++++||+|+.||+.||++.||++|++++++|+..++++++++|+++|+|+
T Consensus         1 LTGL~Nr~~f~~~l~~~l~~~~~~~~~~~l~~i~id~~~~in~~~G~~~~d~ll~~~a~~l~~~~~~~d~~~R~~~~~F~   80 (162)
T d1w25a3           1 LTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFV   80 (162)
T ss_dssp             TTCCBCHHHHHHHHHHHHHHHHTSSCCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTSCTTSEEEECSSSEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCEEE
T ss_conf             98816889999999999999986599789999526311110443321112101356666566304876644414897689


Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             501686101234445899999863154067-99568999999998779-9899899999999999999970996899940
Q gi|254781079|r  182 AAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS  259 (266)
Q Consensus       182 ill~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~t~s~Gia~~~-~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~~~  259 (266)
                      +++|..+.+++...+.++...+.+.++... ....+.+++|+|++.++ ++.++++++.+|+.||++||++|||+||+++
T Consensus        81 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~siGia~~~~~~~~~~~ll~~A~~AL~~AK~~G~n~v~~~~  160 (162)
T d1w25a3          81 VIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKA  160 (162)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHHHTSCEECGGGSCEECCCEEEEEEECCSTTCCHHHHHHHHHHHHHHHHHTTSSCEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             87602320345667777788998640332232211023333765505899999999999999999999982999299826


Q ss_pred             H
Q ss_conf             2
Q gi|254781079|r  260 D  260 (266)
Q Consensus       260 ~  260 (266)
                      -
T Consensus       161 ~  161 (162)
T d1w25a3         161 A  161 (162)
T ss_dssp             C
T ss_pred             C
T ss_conf             8


No 2  
>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis familiaris) [TaxId: 9615]}
Probab=90.81  E-value=0.077  Score=30.00  Aligned_cols=128  Identities=13%  Similarity=0.066  Sum_probs=73.2

Q ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCCC-----CHHHHHHHHHHHH
Q ss_conf             972575544221000114688654443110000000111110-0000013343036501686-----1012344458999
Q gi|254781079|r  127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGS-----SEQEAAILANDLR  200 (266)
Q Consensus       127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~~-----~~~~~~~~~~~l~  200 (266)
                      +..+++++||-+|..+-+.++++.--++|..+-..+...+.+ +..+.++-||.+.+.++..     ..+.+...+..+.
T Consensus        13 ~~Vtvlf~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~~~k~~GD~~~a~f~~~~~~~d~~~~a~~~a~~~~   92 (190)
T d1azsa_          13 DNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDMI   92 (190)
T ss_dssp             EEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             96899999848736988769999999999999999722000367411102125799996477764321057788888899


Q ss_pred             HHHHHCCCCCCCCCEEEEEEEEEEEEC---CC-CCC---HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             998631540679956899999999877---99-899---8999999999999999709968999
Q gi|254781079|r  201 KIIENSQINISSGPSIHITISAGIAER---CH-KEP---ISTIIYRADQALYVAKKSGRNRVVC  257 (266)
Q Consensus       201 ~~l~~~~~~~~~~~~~~~t~s~Gia~~---~~-~~~---~~~ll~~Ad~Al~~AK~~gkn~~~~  257 (266)
                      +.+............+++.++.|-+..   .. ..+   ..+.+..|..-...++   .+++.+
T Consensus        93 ~~~~~~~~~~~~~l~~riGih~G~v~~g~~G~~~~~~~~~G~~Vn~Aarl~~~a~---~~~ilv  153 (190)
T d1azsa_          93 EAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGK---AGRIHI  153 (190)
T ss_dssp             HHHHHHHHHHCSCCEEEEEEEEEEEEEEECSSSSCCCEEESHHHHHHHHHHHTCC---TTSEEE
T ss_pred             HHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEECCCEEHHHHHHCCCC---CCEEEE
T ss_conf             9986301124665325777743023455455423224452461016778762588---997998


No 3  
>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=88.92  E-value=0.54  Score=23.57  Aligned_cols=127  Identities=11%  Similarity=0.061  Sum_probs=61.5

Q ss_pred             CEEEEEEECCCCCCCCCCCCCC-CCCCCCCHHHCC---CCCCC----CCCHHHCCCCCCEEEEECC--CCCH--------
Q ss_conf             7257554422100011468865-444311000000---01111----1000000133430365016--8610--------
Q gi|254781079|r  128 KLSIVFFDIDYFKQINDNFGHP-VGDKVIAFLSDQ---LVVVF----GTPMFVGRLGGEEFAAAAL--GSSE--------  189 (266)
Q Consensus       128 ~~~l~~idid~fk~iNd~~G~~-~gD~~L~~va~~---l~~~~----~~~~~~~R~~gdeF~ill~--~~~~--------  189 (266)
                      +.++++.||-+|..+-+.++-. .+++++..+-+.   +...+    +.+..+-++-||.+.+++.  ..+.        
T Consensus         6 ~vtvlF~Di~gfT~l~~~~~~~~~~~~~~~~Ln~~~~~fd~~~~~~~~~g~~~~k~iGD~~~a~~g~~~~~~~~~a~~~~   85 (199)
T d1azsb_           6 CVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPE   85 (199)
T ss_dssp             EEEEEEEECTTHHHHCCCCTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEESSSCC----------
T ss_pred             CEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCHH
T ss_conf             48999997479738897477546999999999999999999999986368479998357489996688876544421467


Q ss_pred             ------HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC---CCC----CCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             ------12344458999998631540679956899999999877---998----99899999999999999970996899
Q gi|254781079|r  190 ------QEAAILANDLRKIIENSQINISSGPSIHITISAGIAER---CHK----EPISTIIYRADQALYVAKKSGRNRVV  256 (266)
Q Consensus       190 ------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~---~~~----~~~~~ll~~Ad~Al~~AK~~gkn~~~  256 (266)
                            ..+...+..+.+.+.+..........+++.++.|-+..   ...    +-..+.+..|..-...+   ..++|.
T Consensus        86 ~~~~~~~~av~~a~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~Gv~g~~~~~y~v~Gd~VN~AaRle~~a---~~g~I~  162 (199)
T d1azsb_          86 RQYMHIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTG---VLDKIQ  162 (199)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTC---CTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC---CCCEEE
T ss_conf             78986999999999999876530136899734886640127546122156643325065899999998358---998699


Q ss_pred             E
Q ss_conf             9
Q gi|254781079|r  257 C  257 (266)
Q Consensus       257 ~  257 (266)
                      +
T Consensus       163 v  163 (199)
T d1azsb_         163 V  163 (199)
T ss_dssp             E
T ss_pred             E
T ss_conf             8


No 4  
>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase {Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]}
Probab=80.27  E-value=1.2  Score=20.84  Aligned_cols=74  Identities=16%  Similarity=0.206  Sum_probs=46.6

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             8972575544221000114688654443110000000111110-0000013343036501686101234445899999
Q gi|254781079|r  126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI  202 (266)
Q Consensus       126 ~~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~~~-~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~~  202 (266)
                      .++.++++.||.+|..+-+..+.. -.++|...-..+...+.. +..+..+-||-|.++++.  +.++...+..+...
T Consensus        10 ~~~vtilF~DI~gfT~l~e~~p~~-~~~~l~~~~~~~~~~i~~~~G~~~k~~GD~~l~~F~~--p~~a~~~A~~~q~~   84 (235)
T d1fx2a_          10 TDPVTLIFTDIESSTALWAAHPDL-MPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKS--PFAAVQLAQELQLC   84 (235)
T ss_dssp             TSCEEEEEEEETTHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECC--CCHHHHHHHHHHHH
T ss_conf             787999998613859999859999-9999999999999999974988999658827885079--73478999999999


No 5  
>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=75.86  E-value=0.62  Score=23.09  Aligned_cols=63  Identities=19%  Similarity=0.178  Sum_probs=41.0

Q ss_pred             HHCCCCCCEEEEECCCCC---HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             000133430365016861---01234445899999863154067995689999999987799899899999999999999
Q gi|254781079|r  171 FVGRLGGEEFAAAALGSS---EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA  247 (266)
Q Consensus       171 ~~~R~~gdeF~ill~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~A  247 (266)
                      .+-+++-||+.+=+.+..   ..++..++++|++.+.+.         ..+++|+||+..       -++  |..|...+
T Consensus       102 ~ve~~SiDE~fldlt~~~~~~~~~~~~~a~~ir~~I~~~---------~gl~~SiGIa~n-------k~l--AKias~~~  163 (209)
T d1im4a_         102 KIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEK---------EKITVTVGVAPN-------KIL--AKIIADKS  163 (209)
T ss_dssp             EEEEEETTEEEEECTTTTTTCHHHHHHHHHHHHHHHHHH---------HCCCEEEEEESS-------HHH--HHHHHHHT
T ss_pred             CEEECCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHH---------CCCCEEECCCCC-------HHH--HHHHHHCC
T ss_conf             153114441356511431110104899999999999873---------487554430341-------565--89888626


Q ss_pred             HHCC
Q ss_conf             9709
Q gi|254781079|r  248 KKSG  251 (266)
Q Consensus       248 K~~g  251 (266)
                      |..|
T Consensus       164 KP~g  167 (209)
T d1im4a_         164 KPNG  167 (209)
T ss_dssp             CSSC
T ss_pred             CCCE
T ss_conf             9856


No 6  
>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis [TaxId: 118562]}
Probab=72.74  E-value=2.4  Score=18.65  Aligned_cols=61  Identities=13%  Similarity=0.156  Sum_probs=39.8

Q ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC-CCCHHHCCCCCCEEEEECCCC
Q ss_conf             9725755442210001146886544431100000001111-100000013343036501686
Q gi|254781079|r  127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGS  187 (266)
Q Consensus       127 ~~~~l~~idid~fk~iNd~~G~~~gD~~L~~va~~l~~~~-~~~~~~~R~~gdeF~ill~~~  187 (266)
                      +..++++.||-+|..+-+.++.+.-=++|..+-..+...+ ..+..+.++-||.+.++++..
T Consensus         6 r~vtvlF~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~~~f~~~   67 (197)
T d1wc1a_           6 RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAP   67 (197)
T ss_dssp             EEEEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSS
T ss_pred             EEEEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCEEEEEECCC
T ss_conf             79999999917878998769999999999999999876676533322122111689983487


No 7  
>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}
Probab=54.33  E-value=4.5  Score=16.50  Aligned_cols=63  Identities=22%  Similarity=0.228  Sum_probs=40.0

Q ss_pred             HHCCCCCCEEEEECCCCC--HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             000133430365016861--012344458999998631540679956899999999877998998999999999999999
Q gi|254781079|r  171 FVGRLGGEEFAAAALGSS--EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK  248 (266)
Q Consensus       171 ~~~R~~gdeF~ill~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK  248 (266)
                      .+..++-||..+=+.+..  ...+..++.+|+..+.+..         .+++|+|++..       -++  |..|...+|
T Consensus        98 ~ve~~siDE~~ldl~~~~~~~~~~~~~a~~i~~~i~~~~---------g~~~siGia~n-------k~l--AKlAs~~~K  159 (240)
T d1jx4a2          98 KIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKE---------KITVTVGISKN-------KVF--AKIAADMAK  159 (240)
T ss_dssp             CEEEEETTEEEEECTTTCSSHHHHHHHHHHHHHHHHHHH---------CCCEEEEEESS-------HHH--HHHHHHHHC
T ss_pred             EEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH---------CCCCCEEECCH-------HHH--HHHHHHHCC
T ss_conf             466414202333045641001218999999999898763---------25310134131-------668--888750046


Q ss_pred             HCC
Q ss_conf             709
Q gi|254781079|r  249 KSG  251 (266)
Q Consensus       249 ~~g  251 (266)
                      ..|
T Consensus       160 P~g  162 (240)
T d1jx4a2         160 PNG  162 (240)
T ss_dssp             SSC
T ss_pred             CCE
T ss_conf             623


No 8  
>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.97  E-value=5.3  Score=15.97  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC
Q ss_conf             344458999998631540679956899999999877
Q gi|254781079|r  192 AAILANDLRKIIENSQINISSGPSIHITISAGIAER  227 (266)
Q Consensus       192 ~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~  227 (266)
                      +..++++|++.+.+.         ..+++|+||+..
T Consensus       150 ~~~~a~~ir~~I~~~---------~g~~~svGIa~n  176 (273)
T d1zeta2         150 GSQIAAEMREAMYNQ---------LGLTGCAGVASN  176 (273)
T ss_dssp             HHHHHHHHHHHHHHH---------HCCCEEEEEESS
T ss_pred             HHHHHHHHHHHHHHH---------HCCCEEEEECCC
T ss_conf             999999999999998---------599758614672


No 9  
>d1xxaa_ d.74.2.1 (A:) C-terminal domain of arginine repressor {Escherichia coli [TaxId: 562]}
Probab=28.95  E-value=7.7  Score=14.76  Aligned_cols=44  Identities=9%  Similarity=0.100  Sum_probs=24.3

Q ss_pred             HHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             000000111110000001334303650168610123444589999
Q gi|254781079|r  157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK  201 (266)
Q Consensus       157 ~va~~l~~~~~~~~~~~R~~gdeF~ill~~~~~~~~~~~~~~l~~  201 (266)
                      .+|..|...--++.+++-++||+=+++++ .+.+++..+.++|++
T Consensus        26 ~va~~iD~~~~~e~I~GTiAGdDTvlvi~-~~~~~a~~l~~~i~~   69 (71)
T d1xxaa_          26 LIARLLDSLGKAEGILGTIAGDDTIFTTP-ANGFTVKDLYEAILE   69 (71)
T ss_dssp             HHHHHHTTTTTTTTEEEEEECSSEEEEEE-CTTCCHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCEEEEEE-CCHHHHHHHHHHHHH
T ss_conf             99999972799886899972599999997-888999999999997


No 10 
>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.10  E-value=6.1  Score=15.53  Aligned_cols=26  Identities=19%  Similarity=0.386  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEC
Q ss_conf             44458999998631540679956899999999877
Q gi|254781079|r  193 AILANDLRKIIENSQINISSGPSIHITISAGIAER  227 (266)
Q Consensus       193 ~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~  227 (266)
                      ..++.+|+..+.+.         ..+|+|+||+..
T Consensus       242 ~~ia~~IR~~I~~e---------tGlt~S~GIa~N  267 (389)
T d1jiha2         242 SQVCKGIRDSIKDI---------LGYTTSCGLSST  267 (389)
T ss_dssp             HHHHHHHHHHHHHH---------HCCCCEEEEESS
T ss_pred             HHHHHHHHHHHHHH---------HCCCCEECCCCC
T ss_conf             99999999999998---------699843024552


No 11 
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}
Probab=23.77  E-value=14  Score=12.69  Aligned_cols=48  Identities=15%  Similarity=0.046  Sum_probs=31.3

Q ss_pred             HCCCCCCCCCCHHHCCCCCCEEEE-----ECCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             000011111000000133430365-----016861012344458999998631
Q gi|254781079|r  159 SDQLVVVFGTPMFVGRLGGEEFAA-----AALGSSEQEAAILANDLRKIIENS  206 (266)
Q Consensus       159 a~~l~~~~~~~~~~~R~~gdeF~i-----ll~~~~~~~~~~~~~~l~~~l~~~  206 (266)
                      +.......+-+++-.|..|..+.+     +-++.+..++..+++++.+.+.+.
T Consensus        14 i~~~~gV~~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~I~~~ie~~l~~~   66 (82)
T d2qfia1          14 VTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRR   66 (82)
T ss_dssp             HTTSSSCSCBCCCCCCTTSCCBCCBSCTTSTTTCSCGGGHHHHHHHHHHTTSS
T ss_pred             HHCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             97199923454899999689099999999899999999999999999999976


No 12 
>d1lxna_ d.58.48.1 (A:) Hypothetical protein MTH1187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.08  E-value=15  Score=12.60  Aligned_cols=76  Identities=14%  Similarity=0.214  Sum_probs=36.2

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             03650168610123444589999986315406799568999999998779989989999999999999997099689994
Q gi|254781079|r  179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF  258 (266)
Q Consensus       179 eF~ill~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~t~s~Gia~~~~~~~~~~ll~~Ad~Al~~AK~~gkn~~~~~  258 (266)
                      ||+++--++.......+..+..+.+++.      |....++ +.|-..  +|+++++++.-...+-...-+.|-+|+...
T Consensus         5 ei~v~P~gt~~~svs~yVa~~i~~i~~s------Gl~y~~~-pmgT~I--Eg~d~dev~~~v~~~he~~~~~G~~RV~t~   75 (99)
T d1lxna_           5 ELTVIPLGTCSTSLSSYVAAAVEALKKL------NVRYEIS-GMGTLL--EAEDLDELMEAVKAAHEAVLQAGSDRVYTT   75 (99)
T ss_dssp             EEEEEESSCSSSCCHHHHHHHHHHHTTS------SCEEEEE-TTEEEE--EESSHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHC------CCCEEEC-CCCCEE--CCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9999757999987899999999999975------9975746-880353--379899999999999999997799869999


Q ss_pred             CHHHC
Q ss_conf             02100
Q gi|254781079|r  259 SDIEN  263 (266)
Q Consensus       259 ~~~~~  263 (266)
                      =-+++
T Consensus        76 iKId~   80 (99)
T d1lxna_          76 LKIDD   80 (99)
T ss_dssp             EEEEE
T ss_pred             EEEEC
T ss_conf             99760


No 13 
>d1iwga2 d.58.44.1 (A:135-181,A:274-330) Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia coli [TaxId: 562]}
Probab=22.28  E-value=15  Score=12.49  Aligned_cols=63  Identities=13%  Similarity=0.041  Sum_probs=38.3

Q ss_pred             CCHHHCCCCCCCCCCHHHCCCCCCEEEEE-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf             10000000111110000001334303650-1686101234445899999863154067995689
Q gi|254781079|r  155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIENSQINISSGPSIH  217 (266)
Q Consensus       155 L~~va~~l~~~~~~~~~~~R~~gdeF~il-l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  217 (266)
                      |+.||+.=.....+.+..+|+.|..=+.+ +...+...+...++.+++.+.+.+...+.|..+.
T Consensus        35 l~DVA~V~~~g~~~~~~~~~~nG~~av~l~I~~~~gaN~i~v~~~V~~~l~el~~~lP~Gv~~~   98 (104)
T d1iwga2          35 TSGVGDVQLFGSQNYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIV   98 (104)
T ss_dssp             STTCSEEEESSCCCCSCEEEETTEEEEEEEEECCTTCCTHHHHHHHHHHTTTTGGGCCTTEEEE
T ss_pred             ECCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             5584589972655776988652210000113326887699999999999999872098980998


No 14 
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.45  E-value=13  Score=12.89  Aligned_cols=56  Identities=16%  Similarity=0.220  Sum_probs=29.5

Q ss_pred             CCCCCCCCCC--CCCCHHHCCCCCCCCCCH-HHCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             1468865444--311000000011111000-000133430365016861012344458999
Q gi|254781079|r  143 NDNFGHPVGD--KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR  200 (266)
Q Consensus       143 Nd~~G~~~gD--~~L~~va~~l~~~~~~~~-~~~R~~gdeF~ill~~~~~~~~~~~~~~l~  200 (266)
                      +|.||-..-+  +++.+|-+.+++.++++- +..|++++|+.-  .+.+.++...+++.+.
T Consensus       180 tDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~--~g~~~~~~~~~~~~l~  238 (330)
T d1ps9a1         180 SDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVE--DGGTFAETVELAQAIE  238 (330)
T ss_dssp             CSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCST--TCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC--CCCCHHHHHHHHHHHH
T ss_conf             5667724766447799999999997388760575156100146--8888899999999999


Done!