BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62] (266 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62] gi|254040756|gb|ACT57552.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62] Length = 266 Score = 534 bits (1376), Expect = e-150, Method: Compositional matrix adjust. Identities = 266/266 (100%), Positives = 266/266 (100%) Query: 1 MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60 MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG Sbjct: 1 MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60 Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS Sbjct: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF Sbjct: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA Sbjct: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266 DQALYVAKKSGRNRVVCFSDIENNTC Sbjct: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266 >gi|315122462|ref|YP_004062951.1| diguanylate cyclase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495864|gb|ADR52463.1| diguanylate cyclase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 259 Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 206/259 (79%), Positives = 234/259 (90%) Query: 1 MTRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG 60 MT+ LKD L IWL +EKNLESFSP+ FM YFSIFF+IFI ++IFI N+ LFYIGL PFYG Sbjct: 1 MTKYLKDLLRIWLLYEKNLESFSPNAFMTYFSIFFTIFITSIIFITNVVLFYIGLIPFYG 60 Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 +EYIL+EN+SLVIISI ISL+LGYISGSILKELF++YN++S+LSRIDCLSGLLNHSAFIS Sbjct: 61 VEYILLENISLVIISIVISLILGYISGSILKELFVAYNKMSRLSRIDCLSGLLNHSAFIS 120 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 +LGS +EKLSIVFFDID FK IND+FGHPVGDKVIAFLS++LV VF +PMFVGRLGGEEF Sbjct: 121 NLGSCSEKLSIVFFDIDNFKFINDSFGHPVGDKVIAFLSEKLVYVFQSPMFVGRLGGEEF 180 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 AAAALG SE+EAAILANDLRKIIENS I ISS + ITISAGI+ERC+KEPISTI+Y+A Sbjct: 181 AAAALGLSEKEAAILANDLRKIIENSFIKISSSQFVQITISAGISERCNKEPISTIVYQA 240 Query: 241 DQALYVAKKSGRNRVVCFS 259 DQALYVAKK GRNRVVCF Sbjct: 241 DQALYVAKKLGRNRVVCFK 259 >gi|163760787|ref|ZP_02167867.1| probable urease-associated protein [Hoeflea phototrophica DFL-43] gi|162282109|gb|EDQ32400.1| probable urease-associated protein [Hoeflea phototrophica DFL-43] Length = 261 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/210 (37%), Positives = 114/210 (54%), Gaps = 3/210 (1%) Query: 51 FYIGLTPFYGL-EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109 ++ GL P+ + + + + + I+ TIS+ G + +L +S + + LSR D L Sbjct: 38 YFSGLMPYEKMGDALFLATVLTPPIAFTISVAAYIAVGFAIHDLGVSRDELEWLSRTDML 97 Query: 110 SGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 SGL N AF+++ + + ++V FDID FK +ND+ GH GDKVI +++ L VFG Sbjct: 98 SGLANRRAFLTAFETTEGEKTMVVFDIDRFKTVNDSHGHSAGDKVIGEVANMLSTVFGDR 157 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 RLGGEEFA + E A L+ R I QI + + +T+SAGIA Sbjct: 158 SLCARLGGEEFAVFSGEVPFGEFAALSELARMRIAGLQIEVDD-SVVQVTVSAGIARCSE 216 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV-CF 258 E S RAD+ LY AK SGRNRV+ CF Sbjct: 217 NETFSQTFSRADKLLYRAKTSGRNRVMFCF 246 >gi|19070379|gb|AAL83832.1|AF347070_9 urease-associated hypothetical protein [Rhizobium leguminosarum bv. viciae] Length = 287 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 112/232 (48%), Gaps = 1/232 (0%) Query: 25 HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84 + F + S I +I + L +GL P I + +I T+S +L Sbjct: 21 YVFALKMSFLAVILSGVIIALTMPSLDLLGLLPVTLAHAIGFSAIFSWLIGGTVSGMLSL 80 Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144 +G +++L +S +LSR D LSGLLN AF +L + + S+V FD+D FK IND Sbjct: 81 FAGFAMRDLALSRAEFEKLSRTDTLSGLLNRRAFTEALDNVDSNASLVIFDVDRFKAIND 140 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH GD VI +S L F V RLGGEEF G + +R I Sbjct: 141 RFGHGCGDAVIIAVSAMLTSAFDEMAVVARLGGEEFGVIVSGEPLEARMERIEGVRARIA 200 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I + G I IT+S G+A+ + AD+ALY+AK GRNRVV Sbjct: 201 SGAIK-AEGHEIRITVSGGVADLVTGRHKQAVYASADRALYLAKALGRNRVV 251 >gi|218680699|ref|ZP_03528596.1| urease-associated protein [Rhizobium etli CIAT 894] Length = 287 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 122/249 (48%), Gaps = 5/249 (2%) Query: 12 WLCHEKNLESFSPHTFMIYFSI---FFSIFIATVIFIANIF-LFYIGLTPFYGLEYILVE 67 W+ + + +F + F++ F ++ ++ VI I L ++GL P + Sbjct: 4 WMSLQADFGNFQHRRNVYLFALKMSFLAVVLSGVIMSLTIPPLGFLGLLPVTLSHALGFG 63 Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127 + ++ T+S +L +G L EL +S +LSR D LSGLLN AF +L + Sbjct: 64 AIFSWLVGGTVSGMLSLAAGFALHELTLSRAEFEKLSRTDTLSGLLNRRAFSEALENTES 123 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 S+V FD+D FK IND FGH GD VI +S L F V RLGGEEF G Sbjct: 124 NASLVIFDVDRFKAINDRFGHACGDAVITAVSAVLTSTFDELSVVARLGGEEFGVIVSGE 183 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 + +R I I ++ G +I ITIS G+A+ + AD+ALY+A Sbjct: 184 PLEARLERIQAVRARIAGGPI-VTEGHNIGITISGGVADLVAGRSKQQVYASADRALYLA 242 Query: 248 KKSGRNRVV 256 K GRNRVV Sbjct: 243 KALGRNRVV 251 >gi|88798529|ref|ZP_01114113.1| GGDEF domain protein [Reinekea sp. MED297] gi|88778629|gb|EAR09820.1| GGDEF domain protein [Reinekea sp. MED297] Length = 476 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 8/173 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 + L ++ QLS +D L+GL N F L + Y++ LSI DID+FK+IN Sbjct: 301 RNLLTELHKERQLSMLDPLTGLPNRQGFDRRLSAELARAERYDQALSIAIIDIDFFKRIN 360 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH VGDKV+ ++ ++ V F+ R GGEEF ++ +E + LR+ + Sbjct: 361 DEFGHLVGDKVLKMMAKEMKRVCRESDFLSRFGGEEFVLLLPQTTLEEGLTAVDKLRRHV 420 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E + + P +++T+SAG+A+R E + + + RAD ALYV+K+ GRNRV Sbjct: 421 ETRPFHYQNTP-VNLTVSAGVAQRQVNETLESWLDRADAALYVSKREGRNRVT 472 >gi|190893128|ref|YP_001979670.1| urease-associated protein [Rhizobium etli CIAT 652] gi|190698407|gb|ACE92492.1| probable urease-associated protein [Rhizobium etli CIAT 652] Length = 282 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 114/230 (49%), Gaps = 15/230 (6%) Query: 34 FFSIFIATVIFIANIF-LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92 F ++ ++ VI I L + GL P I + ++ T+ +L +G + E Sbjct: 25 FVAVILSGVILALTIPPLGFFGLLPMTLSHAIGFGAVFSWLVGGTVCGMLSLAAGFTMHE 84 Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 L +S +LSR D LSGLLN AF +L + S+V FD+D FK IND FGH GD Sbjct: 85 LTLSRAEFEKLSRTDTLSGLLNRRAFTEALDKAEDNASLVIFDVDRFKAINDRFGHACGD 144 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 VI +S L F V RLGGEEF + S E EA + K IE + I+S Sbjct: 145 AVITAVSAVLRSAFDEMSVVARLGGEEF--GVIVSGELEARL------KRIEGVRARIAS 196 Query: 213 GP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I IT+S G+A+ + AD+ALY+AK GRNRVV Sbjct: 197 GAIAADGHDIRITVSGGVADLAAGRSKQAVYASADRALYLAKALGRNRVV 246 >gi|241205995|ref|YP_002977091.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859885|gb|ACS57552.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 286 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 116/244 (47%), Gaps = 6/244 (2%) Query: 13 LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72 L + KN+ + F + + I +I + L +GL P I + Sbjct: 14 LQYRKNV-----YVFALKMAFLAVILSGVIIALTMPSLDLLGLLPVTLAHAIGFSAIFSW 68 Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV 132 +I T+S +L +G +++L +S +LSR D LSGLLN AF +L + + S+V Sbjct: 69 LIGGTVSGMLSLFAGFAMRDLALSRAEFEKLSRTDTLSGLLNRRAFTEALENTDGDASLV 128 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 FD+D FK IND FGH GD VI +S L F V RLGGEEF G + Sbjct: 129 IFDVDRFKTINDRFGHGCGDAVIIAVSAMLTSAFDEMSVVARLGGEEFGVIVSGEPLEAR 188 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 +R I I + G I IT+S G+A+ + AD+ALY+AK GR Sbjct: 189 MERVEGVRARIAGGAIK-AEGHDIRITVSGGVADLVAGRNKQAVYASADRALYLAKALGR 247 Query: 253 NRVV 256 NRVV Sbjct: 248 NRVV 251 >gi|218673892|ref|ZP_03523561.1| probable urease-associated protein [Rhizobium etli GR56] Length = 283 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/184 (38%), Positives = 95/184 (51%), Gaps = 1/184 (0%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV 132 ++ T+ +L +G + EL +S +LSR D LSGLLN AF +L S+V Sbjct: 65 LVGGTVCGMLSLTAGFTMHELTVSRAEFEKLSRTDTLSGLLNRRAFTEALDKTEGNASLV 124 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 FD+D FK IND FGH GD VI +S L+ F + RLGGEEF G + Sbjct: 125 IFDVDRFKAINDRFGHACGDAVITAVSAMLISAFDEMSVIARLGGEEFGVIVSGEPLEAR 184 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 ++R I + I + G I IT+S G+A+ + AD+ALY+AK GR Sbjct: 185 MERIEEVRARIASGAI-AAEGHDIRITVSGGVADLAAGRSKQAVYASADRALYLAKALGR 243 Query: 253 NRVV 256 NRVV Sbjct: 244 NRVV 247 >gi|91774395|ref|YP_544151.1| diguanylate cyclase [Methylobacillus flagellatus KT] gi|91708382|gb|ABE48310.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT] Length = 521 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/182 (40%), Positives = 102/182 (56%), Gaps = 10/182 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDYFKQIND 144 EL + +RI++++ D L+G LN A + L + LSI DID+FKQIND Sbjct: 340 ELTLQLDRINEIAHEDYLTGTLNRRGMDEALVRELNRADRFGMPLSIAMMDIDHFKQIND 399 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKII 203 N GH GD+ +A L+ + T + R GGEEF G++EQ+A +++ R++ Sbjct: 400 NLGHATGDQALAHLASVIKESLRTTDVIARYGGEEFIILLPGTAEQDAISVIMRAQREL- 458 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +I + + I IT SAG+AER EP II R DQALY AK SGRNRVV S ++ Sbjct: 459 -TRKIFLHNDSHILITFSAGVAERKAGEPADAIIGRTDQALYRAKNSGRNRVVGASMLDQ 517 Query: 264 NT 265 T Sbjct: 518 AT 519 >gi|222086805|ref|YP_002545339.1| urease-associated protein [Agrobacterium radiobacter K84] gi|221724253|gb|ACM27409.1| urease-associated protein [Agrobacterium radiobacter K84] Length = 285 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 126/259 (48%), Gaps = 7/259 (2%) Query: 12 WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLF-----YIGLTPFYGLEYILV 66 W+ + L F + +F++ S A V+ +A I L + GL P L+ + + Sbjct: 4 WISLQAELGDFQCRRTIYFFALKMSC-AAIVLSVAIILLMLPAVQWFGLLPLPMLDAVRL 62 Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126 L I +S L ++G + +L +S +LSR D LSGLLN AF +L Sbjct: 63 CILLASFIGGIVSAALALLAGHAIHKLALSNAEFERLSRTDMLSGLLNRRAFTEALDRVE 122 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 S+V FD+D FK IND +GH GD VI +S +FG V RLGGEEF A G Sbjct: 123 ADASLVIFDVDRFKTINDRYGHASGDAVIIAVSQIFSSIFGGRDVVARLGGEEFGAIVHG 182 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 E D++ +I I + G ++ ITISAGIA+ AD+ALY+ Sbjct: 183 HDMAERIARIEDVKALIAEHAIAVEGG-AVTITISAGIADIWGPRRKEAAYAAADKALYL 241 Query: 247 AKKSGRNRVVCFSDIENNT 265 AK GRNR+V S+ N Sbjct: 242 AKALGRNRIVHESEWMNQA 260 >gi|283779436|ref|YP_003370191.1| response regulator receiver modulated diguanylate cyclase [Pirellula staleyi DSM 6068] gi|283437889|gb|ADB16331.1| response regulator receiver modulated diguanylate cyclase [Pirellula staleyi DSM 6068] Length = 569 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 100/177 (56%), Gaps = 11/177 (6%) Query: 98 NRISQLSRIDCLSGLLN----HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPV 150 R+S L+R D ++GLL H + G LS V FD D+FK+IND +GHPV Sbjct: 130 KRLSLLARTDPMTGLLTKKVFHEMLVKEWGRSTRHHFPLSCVMFDCDFFKRINDTYGHPV 189 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+VI + L + R GGEEFA ++E AAI A +RK++ +I + Sbjct: 190 GDEVIRRIGRTLSSNCRGSDVIARFGGEEFAVLLPETTESNAAIWAERIRKLVAADRIMV 249 Query: 211 SSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G + ITIS G+A+R + +P ++ ADQAL VAK+SGR+R+V FS + NT Sbjct: 250 -DGKELAITISGGVAQRMVDNAQP-DQLVDMADQALLVAKRSGRDRIVTFSSMLGNT 304 >gi|92113067|ref|YP_572995.1| diguanylate cyclase with PAS/PAC sensor [Chromohalobacter salexigens DSM 3043] gi|91796157|gb|ABE58296.1| diguanylate cyclase with PAS/PAC sensor [Chromohalobacter salexigens DSM 3043] Length = 438 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 8/164 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +LS D L+G LN A++S L S +++S+V FDID+FK IND +GH G Sbjct: 268 RLQELSTTDSLTGALNRGAYLSCLRSGLEAADHVAQRMSLVIFDIDHFKTINDTWGHAAG 327 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+A + + GR+GGEEF+ G S +AA+LA LRK E+ ++ Sbjct: 328 DLVLACVGEICRTALRDQDVFGRIGGEEFSLMLAGQSLNDAALLAERLRKKFESVRVEFH 387 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + ++S G+AER E + ++++RAD LY AK++GRNRV Sbjct: 388 -GEWLSFSVSFGVAERQTSEGVESLLHRADMGLYAAKRNGRNRV 430 >gi|116253470|ref|YP_769308.1| transmembrane GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258118|emb|CAK09219.1| putative transmembrane GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841] Length = 287 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 116/244 (47%), Gaps = 6/244 (2%) Query: 13 LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72 L + KN+ + F + + I +I + L +GL P I + Sbjct: 14 LQYRKNV-----YVFALKMAFLAVILSGVIIALTMPSLDLLGLLPVTLAHAIGFSAIFSW 68 Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV 132 +I T+S +L +G +++L +S +LSR D LSGLLN AF +L + + S+V Sbjct: 69 LIGGTVSGMLSLFAGFAMRDLALSRAEFEKLSRTDTLSGLLNRRAFTEALENTDGNASLV 128 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 FD+D FK IND FGH GD VI +S L F V RLGGEEF G + Sbjct: 129 IFDVDRFKAINDRFGHGCGDAVIVAVSAMLTSAFDEMSVVARLGGEEFGVILSGEPLEAR 188 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 +R I I + G I IT+S G+A+ + AD+ALY+AK GR Sbjct: 189 MERIEGVRARIACGAIK-AEGHDIRITVSGGVADLVAGRNKQAVYASADRALYLAKALGR 247 Query: 253 NRVV 256 NRVV Sbjct: 248 NRVV 251 >gi|86358902|ref|YP_470794.1| urease-associated protein [Rhizobium etli CFN 42] gi|86283004|gb|ABC92067.1| probable urease-associated protein [Rhizobium etli CFN 42] Length = 283 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 111/232 (47%), Gaps = 1/232 (0%) Query: 25 HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84 + F + S IF +I + L ++GL P I + +I T+S +L Sbjct: 17 YVFALKMSFLAVIFSGVIIALTIPPLGFLGLLPVTLSHAISFGAIFSWLIGGTVSGMLSL 76 Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144 +G + EL +S +LSR D LSGLLN AF +L S+V FD+D FK IND Sbjct: 77 ATGFTMHELMLSRAEFEKLSRTDTLSGLLNRRAFTEALDRTEGDASLVIFDVDRFKAIND 136 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH GD VI +S L+ F V RLGGEEF G + +R I Sbjct: 137 RFGHACGDAVITAVSAVLLSAFDELSVVARLGGEEFGVIVSGEPLEARLERIEAVRASIA 196 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I ++ I ITIS G+A+ + AD+ALY+AK GRNRVV Sbjct: 197 GRPI-VAEDCQIAITISGGVADLIAGRNKQQVYASADRALYLAKALGRNRVV 247 >gi|209550625|ref|YP_002282542.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536381|gb|ACI56316.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 287 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 120/257 (46%), Gaps = 21/257 (8%) Query: 12 WLCHEKNLESFSPHTFMIYFSI---FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68 W+ + + +F + F++ F ++ ++ VI I P G +L E Sbjct: 4 WMSLQADFGNFQYRGNVYVFALKMSFLTVLLSGVIMAVTI--------PPLGFLGLLPET 55 Query: 69 LSLVI---------ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 LS I + T+S +L +G L EL +S +LSR D LSGLLN AF Sbjct: 56 LSHAIGFGVIFSWLVGGTVSGMLSLAAGFALHELTLSRAEFEKLSRTDTLSGLLNRRAFT 115 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 +L + S+V FD+D FK IND FGH GD VI +S L+ F V RLGGEE Sbjct: 116 EALENTEGDASLVIFDVDRFKAINDRFGHGCGDAVITAVSAMLISAFDEMSVVARLGGEE 175 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F G EA + + + + G I IT+S G+A+ + Sbjct: 176 FGVIISGEP-LEARMERIEGVRARIAGGAIAAEGHDIRITVSGGVADLAAGRNKQAVYAS 234 Query: 240 ADQALYVAKKSGRNRVV 256 AD+ALY+AK GRNRVV Sbjct: 235 ADRALYLAKALGRNRVV 251 >gi|87120950|ref|ZP_01076842.1| PAS:GGDEF protein [Marinomonas sp. MED121] gi|86163788|gb|EAQ65061.1| PAS:GGDEF protein [Marinomonas sp. MED121] Length = 386 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 132/229 (57%), Gaps = 15/229 (6%) Query: 41 TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100 T+I I+ F Y+ + +E IL L ++++ TI+++L + G + F Y I Sbjct: 161 TIILISEAFRLYLLIDK---IEPILA--LGFLVVAHTIAIILNSV-GIMTAFSFAHYKAI 214 Query: 101 SQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 LS+ D L+GLLN F S + + ++++++ DIDYFK INDN GH GD+V+ Sbjct: 215 RNLSKQDSLTGLLNRRGFFSLYQNKSTRYKEVAVISCDIDYFKTINDNHGHIYGDQVLEK 274 Query: 158 LSDQL----VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ QL F V R GGEEF A SS +A ++AN LR+ I ++Q I +G Sbjct: 275 IALQLKQHTKAHFSKESLVARWGGEEFVIALFDSSINQANLIANALRESIYHNQYQI-NG 333 Query: 214 PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + ++++S G+A + ++ I II ++DQALY AK +GRN+V C S++ Sbjct: 334 QNFNLSLSFGVAHQAIEDVEIEDIINQSDQALYHAKSNGRNQVSCHSEL 382 >gi|261855750|ref|YP_003263033.1| response regulator receiver modulated diguanylate cyclase [Halothiobacillus neapolitanus c2] gi|261836219|gb|ACX95986.1| response regulator receiver modulated diguanylate cyclase [Halothiobacillus neapolitanus c2] Length = 547 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/170 (42%), Positives = 91/170 (53%), Gaps = 7/170 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 + Y + R D L+GLLNH+A I N+ LS+V DID+FK +ND FG Sbjct: 365 LRYRQSMAEKRSDSLTGLLNHNAIKDLVEAEIDRANRQNQPLSVVLIDIDHFKNVNDTFG 424 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD VI LS+ L VGR GGEEF + EQ AA L N LR S Sbjct: 425 HQAGDIVIRKLSNLLNTRLRRYDGVGRYGGEEFMITLPNTDEQTAAHLINRLRVQFGQSA 484 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I +G ++ T SAGIA ++++I ADQ LYVAK +GRNRVVC Sbjct: 485 IRTENGSNMLCTFSAGIASFPRFLDLTSLIEAADQHLYVAKANGRNRVVC 534 >gi|307823061|ref|ZP_07653291.1| diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307735836|gb|EFO06683.1| diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 512 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/155 (42%), Positives = 89/155 (57%), Gaps = 8/155 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +A+ L + Y+ LS++ +DID+FK IND++GH GDKV+ ++ Sbjct: 355 DTLTGLPNRNAYNERLETELARWKRYHSPLSLIIWDIDHFKNINDSYGHKAGDKVLLLIA 414 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 QL F+ R GGEEF + + A ILA LR+ IE + N +SG S+ IT Sbjct: 415 KQLSDHSRATDFISRFGGEEFTMLLPNTDSKSALILATQLRQTIEKTGFN-ASGASVAIT 473 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 IS GI E + T RADQALY AK+ GRNR Sbjct: 474 ISCGITEFTDNDTDETAFDRADQALYQAKEQGRNR 508 >gi|269926824|ref|YP_003323447.1| diguanylate cyclase with GAF sensor [Thermobaculum terrenum ATCC BAA-798] gi|269790484|gb|ACZ42625.1| diguanylate cyclase with GAF sensor [Thermobaculum terrenum ATCC BAA-798] Length = 563 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 8/176 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149 Y ++S+ + D LSG LNH AF+ + E+ LSI+FFD+D+FKQ+ND FGH Sbjct: 379 YRQLSEKASRDPLSGFLNHRAFVERVAEEIERSRRLYTGLSILFFDLDHFKQVNDTFGHE 438 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VG+KV+ +S + +GR GGEEF A G+S ++ A LR I Q+ Sbjct: 439 VGNKVLKEMSRVARQTLRSIDVLGRFGGEEFEAILPGASIDDSKAAAERLRSAISGHQVV 498 Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + G +I + +S G A +I AD ALY AK+ GRN+VV ++D+ + Sbjct: 499 LEDGRTITLQVSVGAATYPFDGATPEELIRNADAALYEAKRRGRNKVVHYADMRQD 554 >gi|320160324|ref|YP_004173548.1| hypothetical protein ANT_09140 [Anaerolinea thermophila UNI-1] gi|319994177|dbj|BAJ62948.1| hypothetical protein ANT_09140 [Anaerolinea thermophila UNI-1] Length = 217 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 9/172 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 ++ + QL+ +D L+G+LN S ++ LS++ D+D+FK+IND FGH Sbjct: 45 FSEVQQLATLDDLTGILNRRQLFIEGKREFSRAKRHHRPLSLLMIDLDHFKEINDTFGHA 104 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+ + FL+ + GR GGEEF + +QEAA +A LRK+IE S ++ Sbjct: 105 VGDEALKFLAHIIRKTIREVDIFGRYGGEEFVLVLPETPKQEAAGIAERLRKLIEQSPVS 164 Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + IT+S G+AE+ + +I ADQALY AK+SGRNRV + + Sbjct: 165 TPEG-ELRITVSVGVAEQHELTQTFEDLIGYADQALYHAKQSGRNRVEMYDE 215 >gi|222054413|ref|YP_002536775.1| diguanylate cyclase [Geobacter sp. FRC-32] gi|221563702|gb|ACM19674.1| diguanylate cyclase [Geobacter sp. FRC-32] Length = 417 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 116/212 (54%), Gaps = 18/212 (8%) Query: 62 EYILVENLSLVIISITISLLLGYISG-------SILKELFISYNRISQLSRIDCLSGLLN 114 E + +LS ++I + L++G + G ++ L + R+ +L+ D L+GL N Sbjct: 208 ELVRQTHLSQLLIVLAAILIIGLVVGITYFLTWRLVINLDEAQQRLKRLASTDELTGLRN 267 Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 + L E L I+ D+D FK+IND +GHP GD V+ ++++++ V Sbjct: 268 RRHIMGRLEEEFERSNRLGEPLCIIMLDLDLFKKINDTWGHPFGDHVLKWVANRMNEVVR 327 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 VGR+GGEEF + ++ EA +LA LR+ IE IN G I +TISAGIA Sbjct: 328 AYDVVGRIGGEEFLIISPSTTLGEAVVLAERLRETIEQETIN-HGGTVIPLTISAGIA-L 385 Query: 228 CHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 K I++ +I RAD ALY AK++GRNRVV Sbjct: 386 MGKADINSDDLIRRADAALYRAKQAGRNRVVV 417 >gi|146339674|ref|YP_001204722.1| hypothetical protein BRADO2669 [Bradyrhizobium sp. ORS278] gi|146192480|emb|CAL76485.1| Conserved hypothetical protein; putative membrane protein; Putative diguanylate cyclase (GGDEF domain) [Bradyrhizobium sp. ORS278] Length = 382 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/182 (38%), Positives = 100/182 (54%), Gaps = 15/182 (8%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDI 136 Y+ G LKE +Y RI +L+ +D L+G LN + + L SIV D+ Sbjct: 205 YLRGQKLKE---AYRRIEELAELDELTGALNRRSIMQVLDEEMARCRQAGRPCSIVLIDL 261 Query: 137 DYFKQINDNFGHPVGDKVI-AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 D+FK+IND GHP GD V+ F + G+ F GR GGEEF G+ + AA L Sbjct: 262 DWFKRINDTHGHPTGDDVLRTFAITMYANIRGSDRF-GRYGGEEFLLVLPGAPAEPAARL 320 Query: 196 ANDLRKIIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 A LR+II ++++ S+ + +T SAG+A R E +++ RAD ALY +K +GRNR Sbjct: 321 AERLRRII--AELDWSAFSAGLQVTFSAGVATRRGDETAESLLARADHALYDSKANGRNR 378 Query: 255 VV 256 V Sbjct: 379 VT 380 >gi|192290414|ref|YP_001991019.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] gi|192284163|gb|ACF00544.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 381 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 99/181 (54%), Gaps = 11/181 (6%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136 Y G L+E +Y RI +L+ +D L+G N + L + E LS+ D+ Sbjct: 204 YKRGVQLRE---AYQRIEELAELDELTGAYNRRCIMRHLDNEIERAARHCESLSLALIDL 260 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND FGHP+GD+V+ + + + GR GGEEF +S+ EA ++ Sbjct: 261 DWFKRINDTFGHPIGDEVLRTFAITIFANIRSFDRFGRYGGEEFLLLLPNTSDDEARLIL 320 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + LR I+ + + S PS+ +T+SAG+ +E ++ RAD+ALY AK GRNR+ Sbjct: 321 DRLRMIVADLDWSAFS-PSMMVTLSAGVTTMTLQESTEAVLARADRALYEAKHGGRNRIS 379 Query: 257 C 257 C Sbjct: 380 C 380 >gi|227327435|ref|ZP_03831459.1| putative signaling membrane protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 495 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 98/185 (52%), Gaps = 16/185 (8%) Query: 94 FISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS------YNEK--LSIVFFDIDYFK 140 F+S NR I SR D L+ N AF+S L Y +K L+++F DIDYFK Sbjct: 311 FVSMNRRLIKIIESGSRKDALTNTFNRRAFLSMLNGKQSAPGYKKKRQLTLLFLDIDYFK 370 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND +GH GD++IA + L + R GGEEF AA + +++ +A LR Sbjct: 371 QVNDTYGHACGDELIASFARMLSTTIRPSDILCRWGGEEFVIAAYDLTAEQSEAMAEALR 430 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCF 258 + E++ + +S G IH T S G+A E I +I AD+ LY AK GRNR VC Sbjct: 431 HLTESTALTLSDGREIHFTTSIGVAVFAQYEGGNIYDLIGLADEQLYKAKAQGRNR-VCM 489 Query: 259 SDIEN 263 +E+ Sbjct: 490 RLVED 494 >gi|299133471|ref|ZP_07026665.1| diguanylate cyclase [Afipia sp. 1NLS2] gi|298591307|gb|EFI51508.1| diguanylate cyclase [Afipia sp. 1NLS2] Length = 379 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/187 (37%), Positives = 97/187 (51%), Gaps = 27/187 (14%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136 Y G LKE +Y RI +L+ D L+G N + + +L +E+ SI D+ Sbjct: 202 YTQGLALKE---AYRRIEELAEFDELTGAHNRRSIMHALVEESERAIRTKSPCSIALIDL 258 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV--------GRLGGEEFAAAALGSS 188 D+FK+IND +GHPVGD+V+ F MF GR GGEEF ++ Sbjct: 259 DFFKKINDLYGHPVGDEVLR--------TFAITMFANVRAIDKFGRYGGEEFLLIMPETA 310 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 E A +A+ LR II + N S P I +T+SAG+A H E ++ RAD ALY AK Sbjct: 311 EDTAEKVADRLRMIIADIDWN-SISPGIAVTMSAGVATLRHDEAPENLLLRADMALYRAK 369 Query: 249 KSGRNRV 255 GRNR+ Sbjct: 370 DRGRNRI 376 >gi|83644506|ref|YP_432941.1| response regulator [Hahella chejuensis KCTC 2396] gi|83632549|gb|ABC28516.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 303 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 24/206 (11%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122 V+N+ L+I +T S ++L + +++ +LSRID L+ L N + L Sbjct: 109 VQNICLIIYDVTDI-------ASNRRQLEAANSKLEKLSRIDRLTQLNNRGYWEEQLVKE 161 Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 NE +++ FDID+FK++ND +GHP GD+VI +S L + GR GGE Sbjct: 162 YQRVKRTNEASTLIMFDIDHFKKVNDTYGHPAGDEVIRVVSAALRDTMRSTDIAGRYGGE 221 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPI 233 EF+ + + + A A LR IEN ++ G I TIS G+AE + HKE I Sbjct: 222 EFSVILVNTDGKNAMNFAERLRTRIENLEV-THEGRDIRFTISLGLAELDKKIKDHKEWI 280 Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259 RAD ALY +K+ GRNR + Sbjct: 281 E----RADTALYASKQGGRNRATTYE 302 >gi|327399618|ref|YP_004340487.1| diguanylate cyclase [Hippea maritima DSM 10411] gi|327182247|gb|AEA34428.1| diguanylate cyclase [Hippea maritima DSM 10411] Length = 462 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 100/175 (57%), Gaps = 14/175 (8%) Query: 97 YNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 Y + Q++ D L+GL N + SL + + L ++ FD+D+FK+IND +GH Sbjct: 285 YEKTQQMAAYDELTGLYNRRFGMIRLKEEYKRSLRT-EQCLCLIMFDVDHFKKINDTYGH 343 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD +++ +S L F T V R GGEEF A S ++ A A ++RKII+ +Q Sbjct: 344 QAGDYILSSVSKILKSNFRTEDVVLRYGGEEFLCAMSNSDKENAVKKAEEIRKIIQETQF 403 Query: 209 NISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P I ITISAG++ + ++ I +I AD+ALY+AK+SGRN++V F+ Sbjct: 404 KWRDVP-IKITISAGVSRIDIKNGEQKSIEQLIKEADEALYIAKRSGRNKIVTFN 457 >gi|39934887|ref|NP_947163.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009] gi|39648737|emb|CAE27259.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris CGA009] Length = 429 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 99/181 (54%), Gaps = 11/181 (6%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136 Y G L+E +Y RI +L+ +D L+G N + L + E LS+ D+ Sbjct: 252 YKRGVQLRE---AYQRIEELAELDELTGAYNRRCIMRHLDNEIERAARHCESLSLALIDL 308 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND FGHP+GD+V+ + + + GR GGEEF +S+ EA ++ Sbjct: 309 DWFKRINDTFGHPIGDEVLRTFAITIFANIRSFDRFGRYGGEEFLLLLPNTSDDEARLIL 368 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + LR I+ + + S PS+ +T+SAG+ +E ++ RAD+ALY AK GRNR+ Sbjct: 369 DRLRMIVADLDWSAFS-PSMMVTLSAGVTTMTLQESTEAVLARADRALYEAKHGGRNRIS 427 Query: 257 C 257 C Sbjct: 428 C 428 >gi|296533653|ref|ZP_06896211.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957] gi|296266022|gb|EFH12089.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957] Length = 262 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 123/235 (52%), Gaps = 16/235 (6%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-LLLGYISGSILKELF 94 ++ +A + +A LF F L ++I+ I LLLG+I + L L+ Sbjct: 30 AVLLALAVDVAQQLLF------FTDWPTALRSWAVTIVIATGIGVLLLGWIGRAHLA-LY 82 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGDK 153 + + +LSR D L+GL N A + + + L ++V D+D+FK++ND GH VGD Sbjct: 83 EAKQQAERLSRTDPLTGLANRRALLEAAERGDLALMALVIIDLDHFKRVNDTHGHRVGDA 142 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN--DLRKIIENSQINIS 211 V+ +S L G + RLGGEEFA A G E AA+LA LR + + + ++ Sbjct: 143 VLQAVSGILAAELGEEGVLARLGGEEFALLAPG--EAPAALLARLVRLRDRLADQPV-VA 199 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 G ++ +TISAG+A R + AD+ALY AK+ GRNR +C S+ + C Sbjct: 200 EGRAVSVTISAGVALR-QAGSFDALYGEADRALYAAKQGGRNR-ICLSEPLRHLC 252 >gi|88800521|ref|ZP_01116084.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Reinekea sp. MED297] gi|88776752|gb|EAR07964.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Reinekea sp. MED297] Length = 318 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 20/199 (10%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124 V+NL++++ +T I+ S L EL + +R++QLSR D L+ L N + + L + Sbjct: 125 VQNLAVIVYDVTD------IATSKL-ELKAANDRLAQLSRTDGLTQLYNRAYWEEMLSNE 177 Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 + LS++ FDID+FK++ND +GH VGD VI +++++ GR GGE Sbjct: 178 FKRQKRHAHDLSLIMFDIDHFKKVNDTYGHQVGDDVIRAVAEEVRHNSRNTDIAGRYGGE 237 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPIST 235 EFA + S + A + A LRK IEN +++ G + +T+S G+A E H + Sbjct: 238 EFALLLIDSDAENALLFAERLRKAIENRRVSTPEG-ELQVTVSLGVAPWKESFHH--YNA 294 Query: 236 IIYRADQALYVAKKSGRNR 254 I AD+ALY +K GRNR Sbjct: 295 WIEAADKALYTSKDEGRNR 313 >gi|114321226|ref|YP_742909.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] gi|114227620|gb|ABI57419.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] Length = 382 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 8/176 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 S+ +L + Q +R D L+GL N A + + L+++ FD+D FK Sbjct: 200 SVAGQLLMLLRLYRQATR-DPLTGLFNRRALTEQIERERARFLRTGRPLTVLLFDLDRFK 258 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND+ GH VGD+V+ ++ + T GR GGEEF AA ++ ++A ++A +R Sbjct: 259 RINDHHGHLVGDRVLQVFANVVQQNLRTTDHFGRWGGEEFLAALPETTSEQARVVAERVR 318 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + EN ++ ++ GPS+ T S G+A E + ++ R D+ALY AK GRNRVV Sbjct: 319 QACENERLTLAEGPSLGFTTSIGVATLHRDETLDSLFNRVDEALYNAKAYGRNRVV 374 >gi|220932075|ref|YP_002508983.1| diguanylate cyclase [Halothermothrix orenii H 168] gi|219993385|gb|ACL69988.1| diguanylate cyclase [Halothermothrix orenii H 168] Length = 499 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 5/166 (3%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 Y + +++ D L+GL NH+ F + L L+++ DID FKQ+ND FGH VG Sbjct: 333 YKKQEEMANRDGLTGLYNHAYFQNRLHLLLKQENKHPLTLIIMDIDNFKQVNDRFGHLVG 392 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ L+ L + R GGEEFA + ++ +A LRK+I +++I + Sbjct: 393 DKVLKELAHLLKHNLREGDLIARYGGEEFAIILPETELKQGEFIAKRLRKLISDNEIVLD 452 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + S++IT+S G+A+ K I +ADQALY AK++G+NRV Sbjct: 453 NNRSLYITVSIGVAQYNKKWSQEEFIDKADQALYKAKEAGKNRVTL 498 >gi|172056342|ref|YP_001812802.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15] gi|171988863|gb|ACB59785.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15] Length = 361 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 12/224 (5%) Query: 49 FLFYIGLTPFYGLE--YILVEN----LSLVIISITISLLLGYISGSILKELFISYNRIS- 101 +L IG+ Y L Y+L E L + ++ I LL GY++ S L+EL + + Sbjct: 137 YLVLIGIGIGYSLPALYLLTETFNRFLEIALVYIIFILLGGYVTYSFLQELRKHFQFVQT 196 Query: 102 --QLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +L+ D L+ L N +L SY++ S++ DID+FK +ND +GH GD V+ Sbjct: 197 QQELALTDGLTNLANRRKLDETLASYDKYGFAFSVLIVDIDFFKSVNDTYGHDGGDVVLR 256 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 LS L VGR GGEEF + ++A L +R + S+ P+ Sbjct: 257 QLSHLLEHCCPDQALVGRYGGEEFVVLLPDTPLKDAVRLGETIRLACADQHFVFSTYPAF 316 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 H+T+S G A E +I +ADQ+LY AK++GRN+VV +S+ Sbjct: 317 HVTLSIGAASSDQGETSFEVIQKADQSLYQAKQTGRNKVVAYSE 360 >gi|71280812|ref|YP_270895.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71146552|gb|AAZ27025.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 477 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 71/193 (36%), Positives = 108/193 (55%), Gaps = 11/193 (5%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124 V++S I+LL+ +I ++++ + ++ +L+ D L+ L N +F L Sbjct: 288 VLLSTVITLLISFIIVLYVRKIHL---KLDKLASNDDLTNLPNRRSFHDELAKQLLLKER 344 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 YN +LS++F DID FK++ND GH VGDKV+ L++ L FV R GGEEF Sbjct: 345 YNSELSLLFIDIDNFKKVNDTKGHDVGDKVLKSLANVLNGNVRKSDFVARWGGEEFIILL 404 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 +GS +A ++A LR I NS+ ++S +TIS G +++ I TI+ RAD AL Sbjct: 405 IGSDINQAQVIAEQLRSQIANSK-HLSQYAQQQVTISLGATSVTNEDNIDTILKRADLAL 463 Query: 245 YVAKKSGRNRVVC 257 Y AK G+N VV Sbjct: 464 YKAKSKGKNCVVS 476 >gi|225849660|ref|YP_002729894.1| signal transduction response regulator [Persephonella marina EX-H1] gi|225644826|gb|ACO03012.1| signal transduction response regulator [Persephonella marina EX-H1] Length = 509 Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 124/252 (49%), Gaps = 27/252 (10%) Query: 18 NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE--YILVEN---LSLV 72 NLE F P + + I +IA+ I I+N YIG +Y + Y + +N +S V Sbjct: 258 NLEDFKPKSIAV--DINGDYYIASFIPISNKKEKYIGYLVYYEKDNTYGVFKNTFIISYV 315 Query: 73 IISITISLLL--GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLG 123 I++ + LLL +I G ++KE R ++ ID L+G+ N F + Sbjct: 316 GINLLVGLLLTMSFILG-VIKE------RFKAMAEIDTLTGIYNKGKFNHLLQVELDRSK 368 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 Y LS++ FDID+FK+IND FGH GD V+ L+ + + F R GGEEF Sbjct: 369 RYGRPLSLIIFDIDHFKKINDAFGHQAGDYVLKTLAKIVSSNIRSTDFFARWGGEEFVIL 428 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 A + + A ILA +RK IE +T S G+ E + + + + RAD A Sbjct: 429 APETDLEGAQILAEKIRKAIEEYPFETVG----KVTSSFGVTEAFENDTVDSFVKRADVA 484 Query: 244 LYVAKKSGRNRV 255 LY AK GRNRV Sbjct: 485 LYKAKDKGRNRV 496 >gi|262376373|ref|ZP_06069602.1| predicted protein [Acinetobacter lwoffii SH145] gi|262308512|gb|EEY89646.1| predicted protein [Acinetobacter lwoffii SH145] Length = 476 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 126/250 (50%), Gaps = 18/250 (7%) Query: 24 PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83 P +I+ ++ + +F T+I L Y LT FY + + + S + IS+ I L + Sbjct: 231 PLAALIWAALTYRLFSMTLINAFVTILTYYSLTRFYATTHDTLAD-STIYISLRIGLFML 289 Query: 84 YISGSIL-------KELFISYNRISQLSRIDCLSGLLNHSAFISS---LGSYNEKL--SI 131 +S IL ELF R+ L+ D L+ +N F L Y ++ S+ Sbjct: 290 ALSPLILCIISQNRNELF---KRVLYLANHDSLTRTMNRHFFFQKGEYLLQYANRMEFSV 346 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK++ND+FGH VGDKV+ ++ + R+GGEEF + E Sbjct: 347 IMLDIDHFKRLNDDFGHHVGDKVLQHFAEIIRCNLRAEDLFARIGGEEFVLLLWNTEPSE 406 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKK 249 A ++A +R ++E + I S G ++IT+S GI + + + +I ADQALY AK Sbjct: 407 ARLIAERIRDLVEKTPIYQSDGSPLYITVSVGITHQNEPQAQDLQNLINIADQALYQAKH 466 Query: 250 SGRNRVVCFS 259 GRN+VV S Sbjct: 467 RGRNQVVLAS 476 >gi|71908438|ref|YP_286025.1| PAS:GGDEF [Dechloromonas aromatica RCB] gi|71848059|gb|AAZ47555.1| PAS:GGDEF protein [Dechloromonas aromatica RCB] Length = 548 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 95/166 (57%), Gaps = 8/166 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS+ D L+ L N F S Y KLS++ DID+FK+IND GH GD Sbjct: 376 LERLSQFDELTNLFNRRHFFSLAKHELNRSSRYRSKLSVMMLDIDHFKRINDGHGHKTGD 435 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+A + Q+ GR+GGEEFA + ++A+I+A LRK + + ++I Sbjct: 436 LVLANIGKQIGDSLRDSDIAGRMGGEEFAILLPETDLEQASIMAERLRKQVAETWLDIGD 495 Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257 G +++ T+S G+A + ++ + ++++AD ALY AK SGRN+V C Sbjct: 496 GRTLNCTLSIGLATKSDQQIDLENLLHQADTALYAAKNSGRNKVSC 541 >gi|288573613|ref|ZP_06391970.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569354|gb|EFC90911.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 481 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 99/187 (52%), Gaps = 6/187 (3%) Query: 74 ISITISLLLGYISGSILKELFISY-NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--- 129 I+I + L+ + S++ + +Y R+ +L+ +D L+G+ N AF + EK Sbjct: 293 INILVGGLITLVVTSLVALIVRNYERRVERLASVDELTGMWNRRAFDLAFAHLLEKFEGQ 352 Query: 130 -SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 S+ DID+FK +ND +GH +GD+V+ + D + G GR GGEEF G Sbjct: 353 CSVTMMDIDHFKHVNDTYGHLMGDRVLGHVCDVVTKAIGPDDVCGRWGGEEFIVLLKGRK 412 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 + +A A +R+ +E S + IT+S G+AE E T I RADQALY AK Sbjct: 413 KGDAVKTAEKIRRAVEASPYE-DGDVVLPITVSLGVAEHHPGESRETTIARADQALYRAK 471 Query: 249 KSGRNRV 255 +SGRNR Sbjct: 472 ESGRNRT 478 >gi|148262461|ref|YP_001229167.1| diguanylate cyclase [Geobacter uraniireducens Rf4] gi|146395961|gb|ABQ24594.1| diguanylate cyclase [Geobacter uraniireducens Rf4] Length = 422 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 13/204 (6%) Query: 66 VENLSLVIISI-TISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121 + L +V +I TI LLLG +++ ++ L ++ + +L+ D L+GL N + Sbjct: 219 TDKLMIVAATIGTIGLLLGITYFLTWRLVLNLDMAQKHLKRLASTDELTGLKNRRQIMKR 278 Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 L E L ++ D+D+FK+IND +GHP GD V+ ++ + +GR Sbjct: 279 LDEEYQRAIRLGEPLCLIMLDLDHFKKINDTYGHPFGDLVLKCVAGHMKKALRRYDVLGR 338 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPI 233 +GGEEF + G++ +EA +LA LR +E +I + IT+S G+A + + Sbjct: 339 IGGEEFLIVSPGTTREEAVVLAQRLRSTVEMEKIAYED-KKVTITVSCGVAFLYKGDDNV 397 Query: 234 STIIYRADQALYVAKKSGRNRVVC 257 ++ RAD ALY+AK+ GRNRVV Sbjct: 398 EILLKRADSALYIAKQEGRNRVVA 421 >gi|253997135|ref|YP_003049199.1| diguanylate cyclase [Methylotenera mobilis JLW8] gi|253983814|gb|ACT48672.1| diguanylate cyclase [Methylotenera mobilis JLW8] Length = 605 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 97/174 (55%), Gaps = 8/174 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 + EL + + IS+ + D L+G LN +L + LS+ D+D+FK+I Sbjct: 423 INELTLKLDYISEAAHEDFLTGALNRRGMDEALIREFERSDRHGTSLSLAMLDVDHFKKI 482 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GDK +A LS + + + + R GGEEF GS++ +A + + L++ Sbjct: 483 NDTMGHSTGDKALAHLSKVVKGILRSTDVLARYGGEEFVILLPGSNQNDAVTVVSGLQRD 542 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + + + IT SAG+AER H E + +++ RAD ALY+AK+SGRNRVV Sbjct: 543 L-TKNFFLHNNERVLITFSAGVAERVHGESVDSVLPRADAALYLAKQSGRNRVV 595 >gi|146283999|ref|YP_001174152.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501] gi|145572204|gb|ABP81310.1| GGDEF domain protein [Pseudomonas stutzeri A1501] Length = 466 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 114/196 (58%), Gaps = 10/196 (5%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 +L+L ++++ I LL SI + L +++ +++QL+ D L+G+ + AF++ L + Sbjct: 271 SLALSVVALLIFLLSSRYFQSIAR-LRLAHGQLAQLANTDVLTGVSSRRAFLAGLEAELA 329 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 +NE LS++ DID+FK++ND GHP+GD V+ S+ + +GRLGGEEF Sbjct: 330 RARRHNESLSLLMLDIDHFKRVNDVHGHPIGDAVLKQFSETCAGMLRAHDLLGRLGGEEF 389 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYR 239 A + + A +A +R + + + ++G I +T+S G+A+ + ++ R Sbjct: 390 AIVLPHTDAEGARCVAEKIRTAVAQTPMPTAAG-DITVTVSIGLAQMEGLPGEVDQLMAR 448 Query: 240 ADQALYVAKKSGRNRV 255 ADQALY AK+ GRN+V Sbjct: 449 ADQALYEAKRGGRNQV 464 >gi|309779577|ref|ZP_07674338.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA] gi|308921818|gb|EFP67454.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA] Length = 387 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 12/174 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QL+ ID L+G L AFI + + +SI DID FK +ND FGH V Sbjct: 214 RRMEQLASIDELTGALMRRAFIEKANTVLRETVAKGKPVSIAILDIDEFKAVNDAFGHAV 273 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + ++ + + GRLGGEEFA + + + +AA+L ++LR +E S I Sbjct: 274 GDRTLRHVASVVTARLRSSDLFGRLGGEEFAIICVEAQKADAAVLIDELRLAVEGSPIE- 332 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + T SAG+ + + + RAD ALY+AK +GRNRVV ++E Sbjct: 333 ----GVRCTFSAGVECVMPGDTLEVALARADAALYLAKATGRNRVVTAPEVEER 382 >gi|313681541|ref|YP_004059279.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313154401|gb|ADR33079.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 482 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/167 (38%), Positives = 91/167 (54%), Gaps = 9/167 (5%) Query: 97 YN-RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148 YN ++ ++R D L+GL+N AF S + N+ LS++FFDID FK IND GH Sbjct: 311 YNEKLEFMARNDALTGLMNRHAFDDSFNDFLLLSQRNNDPLSLIFFDIDNFKTINDTLGH 370 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ +S+ L +GR GGEEF + + + A ++A LRK IE Sbjct: 371 QAGDNVLIRISELLKTRLRRTDIIGRWGGEEFIIGLINTDYKNAEVIAETLRKAIEEDSR 430 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I P +T S G+A + I TI+ RAD A+Y AK+ G+NR+ Sbjct: 431 LIHLAP-FPVTASFGVATVRTGDTIETILTRADSAMYRAKELGKNRI 476 >gi|289166393|ref|YP_003456531.1| regulatory protein (GGDEF domain) [Legionella longbeachae NSW150] gi|288859566|emb|CBJ13534.1| putative regulatory protein (GGDEF domain) [Legionella longbeachae NSW150] Length = 543 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 8/161 (4%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNHS+ ++ L + LS V DID FK IND +GHP GD VI L+ Sbjct: 379 DSLTGLLNHSSVLNRLNIEITRAKQQDSPLSFVMIDIDNFKLINDTYGHPFGDVVIKKLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L++ +GR GGEEF G++ + + + N+LR N ++ +H+T Sbjct: 439 SMLMMSLRNQDIIGRYGGEEFVLILPGANLENSQKICNNLRLQFSNHTFTVNDH-QVHVT 497 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 IS GI+ H + I+ ADQALY AK++G+N+VV +S+ Sbjct: 498 ISIGISSLTHSYDFNDIVNYADQALYKAKQNGKNQVVVYSE 538 >gi|270158812|ref|ZP_06187469.1| response regulator diguanylate cyclase (GGDEF) domain-containing protein [Legionella longbeachae D-4968] gi|269990837|gb|EEZ97091.1| response regulator diguanylate cyclase (GGDEF) domain-containing protein [Legionella longbeachae D-4968] Length = 481 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 8/161 (4%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNHS+ ++ L + LS V DID FK IND +GHP GD VI L+ Sbjct: 317 DSLTGLLNHSSVLNRLNIEITRAKQQDSPLSFVMIDIDNFKLINDTYGHPFGDVVIKKLA 376 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L++ +GR GGEEF G++ + + + N+LR N ++ +H+T Sbjct: 377 SMLMMSLRNQDIIGRYGGEEFVLILPGANLENSQKICNNLRLQFSNHTFTVNDH-QVHVT 435 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 IS GI+ H + I+ ADQALY AK++G+N+VV +S+ Sbjct: 436 ISIGISSLTHSYDFNDIVNYADQALYKAKQNGKNQVVVYSE 476 >gi|304570498|ref|YP_002208.2| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 352 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 9/182 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 S L + + +R+ +L+ +D ++GL H F + L ++ L+++F D+D FK Sbjct: 170 STLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMDRCRKKKSYLTLLFTDVDNFK 229 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 + ND GH GD+V+ ++ QL+ G R GGEEF G+ + + +R Sbjct: 230 KFNDTHGHQAGDQVLIEVAKQLIRQAGKHDIPARYGGEEFCLVMPGADLERGYEMGEMIR 289 Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258 K +E+S + N + GP + +T+S G++E K+ + +I RAD+ALY AK SG+NR VC+ Sbjct: 290 KAVESSSVKNPNGGPDLKVTLSVGVSEFWPKDKNNRDLIERADKALYTAKNSGKNRTVCY 349 Query: 259 SD 260 + Sbjct: 350 KE 351 >gi|24214183|ref|NP_711664.1| response regulator [Leptospira interrogans serovar Lai str. 56601] gi|24195084|gb|AAN48682.1| response regulator [Leptospira interrogans serovar Lai str. 56601] Length = 352 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 9/182 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 S L + + +R+ +L+ +D ++GL H F + L ++ L+++F D+D FK Sbjct: 170 STLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMDRCRKKKSYLTLLFTDVDNFK 229 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 + ND GH GD+V+ ++ QL+ G R GGEEF G+ + + +R Sbjct: 230 KFNDTHGHQAGDQVLIEVAKQLIRQAGKHDIPARYGGEEFCLVMPGADLERGYEMGEMIR 289 Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258 K +E+S + N + GP + +T+S G++E K+ + +I RAD+ALY AK SG+NR VC+ Sbjct: 290 KAVESSSVKNPNGGPDLKVTLSVGVSEFWPKDKNNRDLIERADKALYTAKNSGKNRTVCY 349 Query: 259 SD 260 + Sbjct: 350 KE 351 >gi|212639481|ref|YP_002316001.1| signal transduction diguanylate cyclase [Anoxybacillus flavithermus WK1] gi|212560961|gb|ACJ34016.1| Signal transduction diguanylate cyclase [Anoxybacillus flavithermus WK1] Length = 371 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 95/173 (54%), Gaps = 20/173 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 N + L+ D L+GLLN + F+ + N++ SI+ DID+FK +ND FGHP GD Sbjct: 207 NSLQALAIQDPLTGLLNRTRFVDLVRVQLHKQNNKEASILIIDIDFFKHVNDQFGHPAGD 266 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ LS L+ F P RLGGEEF + ++A LA LR NI++ Sbjct: 267 QVLKDLSAMLMHYFPPPSLSARLGGEEFIIFLPNTHIEQARQLAEMLRG-------NIAT 319 Query: 213 GP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P +IHIT S GIA+ + +ADQALY+AK++GRNRVV S Sbjct: 320 FPFSYKHHTIHITASFGIAQAT--DSFQHSYSKADQALYIAKQNGRNRVVVIS 370 >gi|45601364|gb|AAS70845.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 312 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 9/182 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 S L + + +R+ +L+ +D ++GL H F + L ++ L+++F D+D FK Sbjct: 130 STLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMDRCRKKKSYLTLLFTDVDNFK 189 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 + ND GH GD+V+ ++ QL+ G R GGEEF G+ + + +R Sbjct: 190 KFNDTHGHQAGDQVLIEVAKQLIRQAGKHDIPARYGGEEFCLVMPGADLERGYEMGEMIR 249 Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258 K +E+S + N + GP + +T+S G++E K+ + +I RAD+ALY AK SG+NR VC+ Sbjct: 250 KAVESSSVKNPNGGPDLKVTLSVGVSEFWPKDKNNRDLIERADKALYTAKNSGKNRTVCY 309 Query: 259 SD 260 + Sbjct: 310 KE 311 >gi|163789433|ref|ZP_02183872.1| YhcK [Carnobacterium sp. AT7] gi|159875287|gb|EDP69352.1| YhcK [Carnobacterium sp. AT7] Length = 369 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/167 (41%), Positives = 93/167 (55%), Gaps = 9/167 (5%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 SR D L+GL N +F + L NE SI+ DID+FKQ+ND +GH GD V+ Sbjct: 197 SRTDPLTGLNNVRSFEFEFNKAKNKLEKSNENFSIMILDIDHFKQVNDQYGHLEGDLVLK 256 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PS 215 L++ L + + + R GGEEF+ + +EA AN LRKI+ENS + +G S Sbjct: 257 KLAEILKMSQNSNDIISRNGGEEFSVLLNDCNHKEAYEKANALRKIVENSFFILQNGFKS 316 Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261 IHITIS GI I ADQALY+AK SGRN+V +S + Sbjct: 317 IHITISIGITTYNDTTIKFDNIYDHADQALYLAKNSGRNKVCSYSQV 363 >gi|163784230|ref|ZP_02179155.1| diguanylate cyclase (GGDEF domain) [Hydrogenivirga sp. 128-5-R1-1] gi|159880503|gb|EDP74082.1| diguanylate cyclase (GGDEF domain) [Hydrogenivirga sp. 128-5-R1-1] Length = 463 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 96/189 (50%), Gaps = 13/189 (6%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNE 127 +IT+S LL I G + + LS D L+GL N F I Y Sbjct: 276 NITLSFLLAVILGFSVYIFLKDLEKFRYLSETDRLTGLYNKGKFNEVLQREIQRAKRYKR 335 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 LS++ FDID+FK+IND +GH VGD+V+ L+ + F R GGEEF A + Sbjct: 336 PLSLIIFDIDHFKKINDTYGHKVGDEVLKALAKLIKKNIRKTDFAARWGGEEFVILAPET 395 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYV 246 + + A LA LR+ +E + P++ +TIS G+A+ E I RAD ALY Sbjct: 396 NVEGAKKLAEKLRQAVETYKF-----PTVGKVTISLGVAQLEPDEKPEDFIVRADMALYK 450 Query: 247 AKKSGRNRV 255 AK+ GRNRV Sbjct: 451 AKEGGRNRV 459 >gi|323138179|ref|ZP_08073252.1| diguanylate cyclase [Methylocystis sp. ATCC 49242] gi|322396641|gb|EFX99169.1| diguanylate cyclase [Methylocystis sp. ATCC 49242] Length = 254 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 122/258 (47%), Gaps = 24/258 (9%) Query: 8 FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYIL 65 F SIW E + ++Y +I S+ A + + +G L P G+ ++ Sbjct: 2 FASIWRVKEPRTRRDALRLVLLYAAISVSVSALVTAAFARMNGWPLGPALIPAIGIPLLV 61 Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125 ++ + S + L + +EL +L+RID LSG LN + Sbjct: 62 APWMTWTVASAALRL------HEMRQEL-------ERLARIDPLSGALNRRGLAEFAARH 108 Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGE 178 + K + D+D FK IND FGH GD VIA ++D + ++ GT VGR GG+ Sbjct: 109 FAERRESGKFCAIVADVDRFKTINDAFGHAAGDAVIARVADIMRLIVGTRDCAVGRFGGD 168 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237 E A +G S +E ILA +LR IE + I + I +T S G+A ++ Sbjct: 169 ELGALIVGLSLEETMILAENLRAAIERT-IFLHGDRRIPVTTSIGVAAVDVDDATPEAML 227 Query: 238 YRADQALYVAKKSGRNRV 255 RADQ+LY AK++GRNRV Sbjct: 228 NRADQSLYAAKEAGRNRV 245 >gi|148270329|ref|YP_001244789.1| diguanylate cyclase [Thermotoga petrophila RKU-1] gi|147735873|gb|ABQ47213.1| diguanylate cyclase [Thermotoga petrophila RKU-1] Length = 258 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 90/159 (56%), Gaps = 14/159 (8%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L+ F+ L Y LSI+ D D FK+IND FGH GDK + +L Sbjct: 97 DPLTGVLSRWYFMERLEEEAYKSSRYKSPLSIIMCDADDFKKINDQFGHVAGDKTLNWLG 156 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ V VGR GGEEF A G+S +EA I+A LRK + NI H+T Sbjct: 157 RKMRSVLRKSDLVGRYGGEEFIIALPGTSLEEAKIVAEKLRKAVMEDPENI-----YHVT 211 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+AE + ++P+ T I RAD+ALY+AK G+N VV Sbjct: 212 LSFGVAEYKNGEDPLET-IKRADEALYLAKTLGKNSVVT 249 >gi|119945575|ref|YP_943255.1| diguanylate cyclase [Psychromonas ingrahamii 37] gi|119864179|gb|ABM03656.1| diguanylate cyclase [Psychromonas ingrahamii 37] Length = 477 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 8/177 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141 ILK + Y + L++ D L+ L N AF L LS+ FFD+D FK Sbjct: 302 ILKTVNKYYKEMEHLAKYDALTNLKNRRAFNEELEHSLLLCKRRASHLSLTFFDLDDFKS 361 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND FGH GDKV+ +++D L +GR GGEEF A + + ++A + +R Sbjct: 362 VNDTFGHQTGDKVLQYVADILKDDIRQTDIIGRWGGEEFIVAFIDTELEDAKFITEKIRA 421 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 IE +S ++ +T S G+ ++ + +++ RADQALY AK++G+N+V C Sbjct: 422 HIEKDSF-LSQLKNMKVTASFGLTTITTQDTLDSLLERADQALYKAKENGKNQVFCL 477 >gi|327482326|gb|AEA85636.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 485 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 113/196 (57%), Gaps = 10/196 (5%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 +L+L ++++ I LL SI + L +++ +++QL+ D L+G+ + AF++ L + Sbjct: 290 SLALSVVALLIFLLSSRYFQSIAR-LRLAHGQLAQLANTDVLTGVSSRRAFLAGLEAELA 348 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 +NE LS++ DID+FK++ND GHP+GD V+ S+ + GRLGGEEF Sbjct: 349 RARRHNESLSLLMLDIDHFKRVNDVHGHPIGDAVLKQFSETCAGMLRAHDLFGRLGGEEF 408 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYR 239 A + + A +A +R + + + ++G I +T+S G+A+ + ++ R Sbjct: 409 AIVLPHTDAEGARCVAEKIRTAVAQTPMPTAAG-DITVTVSIGLAQMEGLPGEVDQLMAR 467 Query: 240 ADQALYVAKKSGRNRV 255 ADQALY AK+ GRN+V Sbjct: 468 ADQALYEAKRGGRNQV 483 >gi|237756213|ref|ZP_04584777.1| signal transduction response regulator [Sulfurihydrogenibium yellowstonense SS-5] gi|237691623|gb|EEP60667.1| signal transduction response regulator [Sulfurihydrogenibium yellowstonense SS-5] Length = 349 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 91/165 (55%), Gaps = 8/165 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS----YNEK---LSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N +F +L +NEK +++ D+D FKQIND FGHP GD Sbjct: 184 VKQEATLDFLTGLTNRRSFDRALNDLIKDFNEKKIPFTLILLDLDNFKQINDKFGHPAGD 243 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +S+ L +GRLGGEEF + + +A +R +IEN +I Sbjct: 244 LVLKEVSNLLRTYLRANTIIGRLGGEEFGIILPNVTLENGKNVAEIIRNVIENHEIK-YD 302 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G I I+ S G+A+ + I TI R D+ALY AK+ G+N+VV Sbjct: 303 GNVIRISASLGVAQVKEGDTIDTIYRRVDEALYQAKRDGKNKVVV 347 >gi|159185045|ref|NP_355056.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] gi|159140319|gb|AAK87841.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] Length = 269 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 21/243 (8%) Query: 35 FSIFIATVIFIANIFLFYIGLTPF--YGLEYILVENLSLVI-----ISITISLLLGYISG 87 FS+ IA ++ + I + GLT +GL L + L + ++ T++LL+ +++ Sbjct: 31 FSVRIACLVTLIVIVMCTGGLTLLAQFGLVTDLFNGIMLSVTLGGAVAFTVTLLVCWLNA 90 Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 ++ L S+ R LS D L+GL N ++ + F DID+FK +ND + Sbjct: 91 REVQILVQSHERFLHLSHTDALTGLSNRLGLYAACAELGSDYCVAFLDIDHFKAVNDGYS 150 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD VIA ++ ++ F P V RLGGEEF QE + LA ++ E + Sbjct: 151 HLVGDLVIASVARRIKEHFDPPAHVARLGGEEFVVV------QETSPLA--FLQMCERVR 202 Query: 208 INISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I + P I +TIS G+A R E +++ AD ALY AK GRNRV + Sbjct: 203 AAIETTPVAYQDLRITVTISIGVAFRGDAEIFDKVMHNADLALYRAKGGGRNRVCMSGHV 262 Query: 262 ENN 264 E Sbjct: 263 ERR 265 >gi|220931247|ref|YP_002508155.1| diguanylate cyclase [Halothermothrix orenii H 168] gi|219992557|gb|ACL69160.1| diguanylate cyclase [Halothermothrix orenii H 168] Length = 556 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D ++G+ NH +S+L E S+V D+D FK IND +GH GD+VI ++ L Sbjct: 395 DSMTGIYNHHYIVSTLSRMKEPFSLVVLDLDNFKNINDTYGHLAGDEVIKNVAINLQNSI 454 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 +VGR GG+EF + S E ++A +++ +E + G I +T S GI Sbjct: 455 RKYDYVGRYGGDEFVIILMNCSLDELKMMAKKIKRAVEEP-VYKYKGNKIRVTASMGIYN 513 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 KE +IYRADQALY AKKSGR+ + ++ E Sbjct: 514 ATEKEEGEQVIYRADQALYAAKKSGRSGIKMWTKSE 549 >gi|95930947|ref|ZP_01313676.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans DSM 684] gi|95132956|gb|EAT14626.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans DSM 684] Length = 648 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 7/166 (4%) Query: 98 NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +L+ D L+G +N F Y + LS++F+D+D+FK +ND +GH Sbjct: 481 QKLERLATTDELTGAVNRRQLFIYTDQFCQLAKRYKKALSVIFYDLDHFKAVNDTYGHAA 540 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++ ++ + + R GGEEF + A + A +R+ I S +N+ Sbjct: 541 GDEVLRQITTRIQSMLRDTDILARYGGEEFCILVPETDGDHAYLFAERIRQRISESSVNL 600 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SSG S+ +T+S G+A E S++I RADQ +Y AK+ GRN VV Sbjct: 601 SSGESLQVTVSMGVATYQEDEQGSSLIDRADQGVYEAKRRGRNCVV 646 >gi|225850806|ref|YP_002731040.1| response regulator receiver modulated diguanylate cyclase [Persephonella marina EX-H1] gi|225645373|gb|ACO03559.1| response regulator receiver modulated diguanylate cyclase [Persephonella marina EX-H1] Length = 359 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 16/194 (8%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132 ++L Y+ S L SY +I +L+ D L+G N L Y LS++ Sbjct: 164 MVLAYVFES---ALLSSYEKIKKLATTDPLTGAFNRYQLFKKLEEEIERSKRYGNHLSLI 220 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 FDID FK IND +GH +GD+V+ D + +GR GGEEF G +++ A Sbjct: 221 MFDIDNFKSINDTYGHNIGDQVLKITIDTIKNHIRKTDTLGRFGGEEFMIICPGINDEGA 280 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 +A +RK++++ I + P ITIS G+AE E I+ I +AD ALY AKK G+ Sbjct: 281 RNIAEKIRKLVKD--IKVEGIP--EITISVGVAEYFPDESITDFIKKADIALYSAKKKGK 336 Query: 253 NRVVCFSDIENNTC 266 NRV +S N C Sbjct: 337 NRVEIYSS--ENVC 348 >gi|316935023|ref|YP_004110005.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315602737|gb|ADU45272.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 359 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 98/180 (54%), Gaps = 11/180 (6%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136 Y G L+E +Y RI +L+ +D L+G N + L + E+ LS+ D+ Sbjct: 182 YKRGIQLRE---AYQRIEELAELDELTGAYNRRRIMRHLDNEIERAARLCEPLSLALIDL 238 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND FGHP GD+V+ + + + GR GGEEF +SE EA ++ Sbjct: 239 DWFKRINDTFGHPTGDEVLRTFAITIFANIRSFDRFGRYGGEEFLLLLPNTSEDEARLIL 298 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + LR I+ + S PS+ +T+SAG+ +E +++ RAD+ALY AK GRNRV Sbjct: 299 DRLRLIVAGLDWSAFS-PSMSVTLSAGVTTMTLQESTESVLSRADRALYEAKHGGRNRVA 357 >gi|317052641|ref|YP_004113757.1| diguanylate cyclase [Desulfurispirillum indicum S5] gi|316947725|gb|ADU67201.1| diguanylate cyclase [Desulfurispirillum indicum S5] Length = 551 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 93/175 (53%), Gaps = 11/175 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S+L D L+GL NHS L + LS+ D+D FK +ND +GH VGD Sbjct: 379 LSELMARDSLTGLFNHSRIKEQLVIELARAKRSGKPLSVAMLDMDKFKTVNDTYGHGVGD 438 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211 +VI L+ L VGR GGEEFAA A + +D+R+ Q++ +S Sbjct: 439 RVIKTLAHLLQQRARQSDTVGRYGGEEFAAILPDCDRDAAWKIVDDIRQRF--GQVSFVS 496 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 G H+T+SAGIA H + T++ AD+ALY AK +GRNR VC + +E+ Sbjct: 497 GGREFHVTLSAGIAASSHYDDSETLLVAADEALYHAKHTGRNR-VCMAPVESTEA 550 >gi|170727262|ref|YP_001761288.1| sensor diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169812609|gb|ACA87193.1| 7TM domain sensor diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 623 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 96/178 (53%), Gaps = 11/178 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK----LSIVFFDIDYFKQI 142 K+L + + +R+D L+GL N AFI S L N + L ++ DID+FK+I Sbjct: 439 KQLLEAKEKAETEARVDILTGLTNRRAFIESAHGFLARANRQPETHLYLLMIDIDHFKKI 498 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD + +++ L T V RLGGEEFAA Q A L+ LRK Sbjct: 499 NDTYGHSAGDAALVAVANSLSETIRTIDVVSRLGGEEFAALMENKDPQGAINLSERLRKA 558 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCF 258 IE I G I +T S GIA+ + + T++ +AD+ALY AK+SGRN V CF Sbjct: 559 IEELVIE-HEGQQIKLTTSIGIAKWGPMDNLDTLMNQADRALYQAKESGRNCVNSSCF 615 >gi|291286670|ref|YP_003503486.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus DSM 12809] gi|290883830|gb|ADD67530.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus DSM 12809] Length = 622 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 88/166 (53%), Gaps = 11/166 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I +LS D L+GL N + L + +N + D D+FK++ND +GH VG Sbjct: 460 KIEELSITDRLTGLYNRHKLDAVLKAERIRNERHNTRFCAAILDADHFKRVNDTYGHQVG 519 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ L+ + F GR GGEEF AL + A LA+ LRK +E + Sbjct: 520 DDVLVKLAAIIKENTRESDFCGRWGGEEFLVVALETDITNTAFLADKLRKAVEETDFT-- 577 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 P +T+S G+AE E I+ I RAD+ALY AK++GRNRVV Sbjct: 578 --PVEKVTVSIGVAEYSRGETIAHFINRADEALYKAKQTGRNRVVS 621 >gi|258406452|ref|YP_003199194.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense DSM 5692] gi|257798679|gb|ACV69616.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense DSM 5692] Length = 578 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 26/224 (11%) Query: 42 VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101 ++ +++ LTP Y E I + ++G S + E + + Sbjct: 370 LVLPGGTRVWHTTLTPVYEEERI--------------TSIVG--SAQDITERKRAEEHLR 413 Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 L+ D L+GL N F+ L + Y + L+++ DID+FK IND GH VGD Sbjct: 414 YLATTDELTGLYNRRHFMEILDTEIERAKRYEQSLALISLDIDHFKTINDTHGHAVGDAA 473 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L+ QL+ P +GRLGGEEFA A + A LA +R +E + I + S Sbjct: 474 LEHLAAQLLACKRQPDSLGRLGGEEFALIAPHTDRAGATELAERIRSELERTPIELES-T 532 Query: 215 SIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+H TIS G+ + I ++ RAD ALY AK++GRNR V Sbjct: 533 SLHPTISLGVTALNIQDNDTIDALLKRADDALYEAKRTGRNRTV 576 >gi|183220727|ref|YP_001838723.1| hypothetical protein LEPBI_I1337 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910828|ref|YP_001962383.1| GGDEF domain-containing response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775504|gb|ABZ93805.1| Response regulator, GGDEF family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779149|gb|ABZ97447.1| Conserved hypothetical protein with GGDEF domain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 353 Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 9/171 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+ +D ++GL H F + L E KLS++F D+D FK ND +GH G Sbjct: 183 RLYELATVDMMTGLKIHHYFQTKLKEEMERCRKKGTKLSLLFTDVDKFKTFNDTYGHQAG 242 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 D V+ ++ QL+ R GGEEF G+SE+EA ++RK +E + N Sbjct: 243 DVVLIEVAKQLIQKAQRHHIPARYGGEEFCLVMPGASEEEAIAKGEEIRKAVEEMVVKNP 302 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + +T+S G++ R +I RAD+ALY AK SGRNR +C+ D Sbjct: 303 NDDSDLKVTLSVGVSSFRPTDRNNKDLIERADKALYQAKHSGRNRTICYKD 353 >gi|119776148|ref|YP_928888.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119768648|gb|ABM01219.1| GGDEF domain-like protein [Shewanella amazonensis SB2B] Length = 385 Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 93/172 (54%), Gaps = 6/172 (3%) Query: 89 ILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIN 143 ++ E + + N + L+ D L+GL N AF+ L S++ D+D+FKQIN Sbjct: 198 LISEYYAAQNEQELQYLADTDSLTGLPNRRAFMGRLERTIKDRRSFSLLIIDVDHFKQIN 257 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD + FL++QL F GR+GGEEFA +S E + A LRK I Sbjct: 258 DTTGHQTGDAALQFLANQLNACIQGEDFAGRIGGEEFAMVQFCASPLEHLVRAESLRKTI 317 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ ++ GP +++T+S G+ + T++ AD ALY AK+SGRN V Sbjct: 318 ASAHPDLGVGP-VYLTVSIGVCMATPPVSLITLMAMADNALYEAKRSGRNCV 368 >gi|117925921|ref|YP_866538.1| diguanylate cyclase [Magnetococcus sp. MC-1] gi|117609677|gb|ABK45132.1| diguanylate cyclase [Magnetococcus sp. MC-1] Length = 220 Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 106/193 (54%), Gaps = 11/193 (5%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSY 125 I+ ISL+ ++ S+ K L ++ ++ D L+G+LN F I + Sbjct: 25 IMRTIISLVGAWLIYSLRKAL----QQLEVMATHDKLTGILNRHGFQERGKYIIDQSQRH 80 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + L++V DID+FK+IND+FGH +GD V+ L +L + V RLGGEEFA Sbjct: 81 SWPLAVVMMDIDHFKKINDSFGHDIGDLVLQSLGSELKKSVRSTDIVARLGGEEFALILP 140 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 + + A +A+ +RK IE S++++ G + T+S G+ + + ++ +AD ALY Sbjct: 141 NTDSKHAHQIADSIRKKIETSRLSLPDGKFLTYTLSLGVTSGLGIDKMDLLLNQADNALY 200 Query: 246 VAKKSGRNRVVCF 258 AK +GRNRVV F Sbjct: 201 RAKGTGRNRVVSF 213 >gi|217975113|ref|YP_002359864.1| diguanylate cyclase [Shewanella baltica OS223] gi|217500248|gb|ACK48441.1| diguanylate cyclase [Shewanella baltica OS223] Length = 385 Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 90/163 (55%), Gaps = 8/163 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +S L+ D L+GL N AF+ S + S N +S++ D+D FK+IND GH VGD Sbjct: 219 KELSTLASQDSLTGLFNRRAFMHNATSIIASENFPVSVLMLDLDNFKKINDVHGHNVGDT 278 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ +D L +GR GGEEFAA + ++A +++ LR IE +N Sbjct: 279 VLKLCADALQDGLKQYGIIGRFGGEEFAAILPRADSEQALVVSEKLRLAIETINVN---- 334 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P I ++IS G+A I ++ RAD+ALY AK GRN+V+ Sbjct: 335 PDIRLSISIGVATSSSVSSIEPLLIRADKALYEAKSKGRNQVI 377 >gi|219848276|ref|YP_002462709.1| diguanylate cyclase [Chloroflexus aggregans DSM 9485] gi|219542535|gb|ACL24273.1| diguanylate cyclase [Chloroflexus aggregans DSM 9485] Length = 369 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 99/179 (55%), Gaps = 11/179 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 SI + L I Y + + + ID L+GL N L + Y++ L+I +DID+FK Sbjct: 195 SISQRLQIEYQLMQEWAFIDMLTGLFNRRRCEQLLQTNIEYSRRYHQPLTICLWDIDHFK 254 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND +GH VGD+V+ ++ + VGR GGEEF + EA L + LR Sbjct: 255 QVNDTYGHEVGDQVLRQIARLAQSSTRSTDLVGRWGGEEFCLILPHTCLSEAEELVDRLR 314 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +I+ +Q+ + P +T S G+ E + ++++I RAD+ALY AK +GRNRVV + Sbjct: 315 HLIK-TQVRVGQQP---VTASFGLVEYDTTDNLASLIRRADEALYAAKAAGRNRVVVMA 369 >gi|193299441|gb|ACF17869.1| DcpA [Vibrio vulnificus] Length = 379 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 21/186 (11%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136 +++ I K I N++ +L+ +D L+G LN AF+ + Y+ K +++ D+ Sbjct: 195 WVAAQIYKHKQI--NKMIELAHLDPLTGALNRRAFVEATYFINDKPRQYDHKTALLMLDL 252 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK IND +GHPVGDKV+ ++ L + V RLGGEEFA + EA LA Sbjct: 253 DKFKAINDAYGHPVGDKVLIEIAQILKNSVRSDDLVARLGGEEFAILLRHVNADEALRLA 312 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST------IIYRADQALYVAKKS 250 LR ++E + + +IH TIS GIA P+ T ++ RAD ALYVAK+ Sbjct: 313 ELLRAMVEQTVVE-HQNQAIHCTISIGIA-----LPLPTDQGFEELMQRADNALYVAKRK 366 Query: 251 GRNRVV 256 GRN+++ Sbjct: 367 GRNQII 372 >gi|227113735|ref|ZP_03827391.1| putative signaling membrane protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 489 Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 97/184 (52%), Gaps = 16/184 (8%) Query: 94 FISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-----YNEK---LSIVFFDIDYFK 140 F+S NR I S D L+ N AF+S L N+K L+++F DIDYFK Sbjct: 305 FVSMNRRLIKIIESSSLKDALTNTFNRRAFLSMLNGRQGVLMNKKKRPLTLLFLDIDYFK 364 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND +GH GD++IA + L + R GGEEF AA + +++ +A LR Sbjct: 365 QVNDTYGHASGDELIASFARMLSAAIRPSDILCRWGGEEFVIAAYDLTAEQSEAMAEALR 424 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCF 258 ++ E++ + +S G IH T S G+A E I +I AD+ LY AK GRNR VC Sbjct: 425 RLTESTALMLSDGRKIHFTTSIGVAIFSQYEGGNIYDLIGLADEQLYKAKTQGRNR-VCM 483 Query: 259 SDIE 262 +E Sbjct: 484 RLVE 487 >gi|229529570|ref|ZP_04418960.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|229333344|gb|EEN98830.1| GGDEF family protein [Vibrio cholerae 12129(1)] Length = 691 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 509 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 568 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 569 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPQQAWGYFEK-LRCKI 627 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 628 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 679 >gi|229505065|ref|ZP_04394575.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229511265|ref|ZP_04400744.1| GGDEF family protein [Vibrio cholerae B33] gi|229518383|ref|ZP_04407827.1| GGDEF family protein [Vibrio cholerae RC9] gi|229608069|ref|YP_002878717.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|229345098|gb|EEO10072.1| GGDEF family protein [Vibrio cholerae RC9] gi|229351230|gb|EEO16171.1| GGDEF family protein [Vibrio cholerae B33] gi|229357288|gb|EEO22205.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229370724|gb|ACQ61147.1| GGDEF family protein [Vibrio cholerae MJ-1236] Length = 691 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 509 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 568 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 569 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYFEK-LRCKI 627 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 628 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 679 >gi|262376901|ref|ZP_06070128.1| predicted protein [Acinetobacter lwoffii SH145] gi|262308246|gb|EEY89382.1| predicted protein [Acinetobacter lwoffii SH145] Length = 440 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 23/242 (9%) Query: 29 IYFSIFFSIFI----ATVIFIANIFLFYIGLTPFYGLE-YILVENLSLVIISITISLLLG 83 +Y SI ++FI + + + F+F + +P + YI N I+++ S L Sbjct: 179 VYCSILIALFIMLGVSQFMSASQAFIFSVVFSPLWFFSIYINWNN----ILNVRRSFL-- 232 Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLS--IVFFDID 137 S+L E +Y + L+ D L+ L N F+ S+ + + S ++ FD+D Sbjct: 233 ---RSLLDEW--NYQTLKNLAHTDDLTQLYNRRHFVDMAERSIHQWPKHASSCLLMFDVD 287 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK IND++GH VGD+V+ +++ + R GGEEF A + Q++ ++A Sbjct: 288 HFKNINDSYGHDVGDRVLQLIAEVTRKEMRHSDVLARFGGEEFIALLEDTQLQDSLVIAE 347 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R I+ I + +I TIS G+AE H +P+ +I +AD ALY AKKSGRNR+ Sbjct: 348 RIRCAIQKQYIYVEPNHTIRFTISIGVAELESHTQPLEDLIKQADIALYQAKKSGRNRIE 407 Query: 257 CF 258 + Sbjct: 408 VY 409 >gi|188580235|ref|YP_001923680.1| diguanylate cyclase [Methylobacterium populi BJ001] gi|179343733|gb|ACB79145.1| diguanylate cyclase [Methylobacterium populi BJ001] Length = 363 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 1/160 (0%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ + +++R D L+G LN ++ G ++ D+D+FK IND FGH GD V+ Sbjct: 202 AHAALRRMARTDALTGALNREGLAAAAGGDPGPAGVIVADLDHFKSINDRFGHAGGDAVL 261 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + + + RLGGEEF G + A LA LR + + + + Sbjct: 262 REFTRRSAGLLPEGALLARLGGEEFGIVLPGHAPNATAYLAERLRHAVGATPVPWRDA-A 320 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I +T+S G+A R E + I RAD+ALYVAK +GRNRV Sbjct: 321 IPVTVSVGVARRADGESLHEAIDRADRALYVAKTAGRNRV 360 >gi|153213495|ref|ZP_01948806.1| GGDEF family protein [Vibrio cholerae 1587] gi|124115959|gb|EAY34779.1| GGDEF family protein [Vibrio cholerae 1587] Length = 791 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 609 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 668 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 669 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYFEK-LRCKI 727 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 728 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 779 >gi|120602347|ref|YP_966747.1| diguanylate cyclase [Desulfovibrio vulgaris DP4] gi|120562576|gb|ABM28320.1| diguanylate cyclase [Desulfovibrio vulgaris DP4] Length = 331 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 100/188 (53%), Gaps = 11/188 (5%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LS 130 + + L S + L+E + +++ D L+GL N AF L + E+ LS Sbjct: 110 LPVELSRDSCTNLREWQRTIEEMARQRDTDPLTGLPNRRAFTRHLEAELERTRRGRGDLS 169 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 +V DID+FK +NDN+GHP GD+V+ L+ QL R+GGEEFA G+S Sbjct: 170 LVILDIDHFKSVNDNYGHPCGDEVLLRLASQLQTSVRLYDLAARIGGEEFAIVLPGASAL 229 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVA 247 +A L + + ++ ++ P H+T S GIA C P S ++ RAD+ALY A Sbjct: 230 KAQALCERILQRFASTGMDCPGVPPFHVTFSGGIAT-CTTGVTCPASLLVDRADKALYEA 288 Query: 248 KKSGRNRV 255 K++GRNR+ Sbjct: 289 KQAGRNRI 296 >gi|218530214|ref|YP_002421030.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium chloromethanicum CM4] gi|218522517|gb|ACK83102.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium chloromethanicum CM4] Length = 298 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 92/167 (55%), Gaps = 12/167 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+GLLN AF+ +K L V DID+FK+IND GH VGD I Sbjct: 131 RLAETDSLTGLLNRRAFLQRTREAAQKAGSFGHLCAVILDIDHFKRINDEHGHDVGDAAI 190 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ ++ V G GRLGGEEFA G EA +A+ LR + +I + GP Sbjct: 191 KAVAG-MIEVEG---IAGRLGGEEFAVMLAGQRLTEAEAVASRLRLKTSDLRIRSTKGP- 245 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDI 261 + +T S G++E E + ++ RAD ALY AK +GRNRVV SD+ Sbjct: 246 VRLTCSFGVSEWSEGETVEGLLKRADIALYEAKTTGRNRVVSAMSDL 292 >gi|89092394|ref|ZP_01165348.1| PAS/PAC sensor hybrid histidine kinase [Oceanospirillum sp. MED92] gi|89083482|gb|EAR62700.1| PAS/PAC sensor hybrid histidine kinase [Oceanospirillum sp. MED92] Length = 1079 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 70/185 (37%), Positives = 97/185 (52%), Gaps = 14/185 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSI 131 S ++GY + + E RI +LS D L+GL N L + E K S+ Sbjct: 889 SEVVGYRA---ISENITDQKRIEELSVTDTLTGLNNRLKIDELLAAQMERHERHGLKFSV 945 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + D+D FK +NDNFGH VGDK++ L++ L VGR GGEEF +S Sbjct: 946 LLLDVDNFKHVNDNFGHDVGDKLLKDLANVLKSNVRKIDTVGRWGGEEFVVICENTSSAN 1005 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A +LA LR II + + T+S GI+E + +STI RADQALYVAK +G Sbjct: 1006 AYVLAEKLRTIIAETDFGVVG----QKTVSIGISELYDGDSLSTIFKRADQALYVAKHNG 1061 Query: 252 RNRVV 256 +N+V+ Sbjct: 1062 KNQVM 1066 >gi|302391652|ref|YP_003827472.1| diguanylate cyclase [Acetohalobium arabaticum DSM 5501] gi|302203729|gb|ADL12407.1| diguanylate cyclase [Acetohalobium arabaticum DSM 5501] Length = 294 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 95/176 (53%), Gaps = 10/176 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIN 143 K+L + + I +LS+ D L+GL N F+ S Y++ LS+V D+D FK IN Sbjct: 118 KKLQQAKDEIEKLSKTDELTGLANRRHFMNYLQKIFSQAQRYSQSLSLVMIDLDKFKNIN 177 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GDKV++ L D L R+GGEEF + +A A +RK I Sbjct: 178 DTYGHDAGDKVLSALGDLLNNETRNEDLAARIGGEEFIVILTQTDLNDARNYAERIRKKI 237 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S++NI S P + IT S G+A + + +I RAD+ALY AK SGR++V + Sbjct: 238 --SKLNIESIP-VKITASLGVATMKNNDDYESIFNRADEALYKAKNSGRDKVCKYK 290 >gi|323497117|ref|ZP_08102137.1| putative GGDEF protein [Vibrio sinaloensis DSM 21326] gi|323317692|gb|EGA70683.1| putative GGDEF protein [Vibrio sinaloensis DSM 21326] Length = 321 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/174 (40%), Positives = 91/174 (52%), Gaps = 9/174 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDN 145 L S ++S LSR D L+ L N + S L E S+V FDID+FK++ND Sbjct: 143 LMDSNQKLSDLSRTDGLTKLFNRRYWESCLLKEFETCKVSGSVSSLVIFDIDHFKKVNDT 202 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH VGD VI SD+L T GR GGEEF G+ +A LRK IE Sbjct: 203 YGHTVGDHVIRHASDELRKASRTSDICGRYGGEEFTVILPGTCANQALYFTERLRKKIEQ 262 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S I G +++ TIS GI E H+ T + AD+ALY +K++GRNR F Sbjct: 263 SII-ACEGYNVNYTISLGICEISAHQTNHLTWLEHADKALYFSKETGRNRSTVF 315 >gi|119468711|ref|ZP_01611763.1| putative GGDEF domain membrane protein [Alteromonadales bacterium TW-7] gi|119447767|gb|EAW29033.1| putative GGDEF domain membrane protein [Alteromonadales bacterium TW-7] Length = 344 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/195 (36%), Positives = 109/195 (55%), Gaps = 14/195 (7%) Query: 71 LVIISITISLLLGYISGSILKELF-----ISYNRISQLSRIDCLSGL-----LNHSAFIS 120 +V +++ I+LLL Y+S + +F +S R+ L+ +D L+G +NH + Sbjct: 139 IVNLNMAINLLLAYVSIWTVSHIFEGSRALSSKRLKNLALLDPLTGAGNRLSMNHYFEVE 198 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + N L ++ D+DYFKQIND FGH VGDKV+ ++ L + +V R+GGEEF Sbjct: 199 LVDKTNTYLFLL--DLDYFKQINDKFGHDVGDKVLTEIATLLRITLAKG-YVFRVGGEEF 255 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 A +S+ EA A LR+ +E + NI G +I +TIS G+A+ + +I A Sbjct: 256 AVIHSFNSKDEALFAAEKLRETVEKTPFNI-EGHAIKLTISIGVADYQANPSLESIFIAA 314 Query: 241 DQALYVAKKSGRNRV 255 D LY AK+ GRN+V Sbjct: 315 DIQLYKAKRLGRNKV 329 >gi|229521460|ref|ZP_04410879.1| GGDEF family protein [Vibrio cholerae TM 11079-80] gi|229341558|gb|EEO06561.1| GGDEF family protein [Vibrio cholerae TM 11079-80] Length = 691 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 509 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 568 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 569 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYFEK-LRCKI 627 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 628 E--QVDLSAVAPGLNVTVSIGFADVQQAESYETVLKLADHALLTAKKLGRNRVV 679 >gi|297578939|ref|ZP_06940867.1| GGDEF family protein [Vibrio cholerae RC385] gi|297536533|gb|EFH75366.1| GGDEF family protein [Vibrio cholerae RC385] Length = 976 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 853 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF LG +Q LR I Sbjct: 854 DRYSHIIGDQAIVAVSQELLRYVGDKTRVARWGGEEFTILYLGDPKQAWGYF-EKLRCKI 912 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964 >gi|46580271|ref|YP_011079.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449688|gb|AAS96338.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233747|gb|ADP86601.1| diguanylate cyclase [Desulfovibrio vulgaris RCH1] Length = 331 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 11/176 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 L+E + +++ D L+GL N AF L + E+ LS+V DID+FK + Sbjct: 122 LREWQRTIEEMARQRDTDPLTGLPNRRAFARHLEAELERTRRGRGDLSLVILDIDHFKSV 181 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 NDN+GHP GD+V+ L+ QL R+GGEEFA G+S +A L + + Sbjct: 182 NDNYGHPCGDEVLLRLASQLQTSVRLYDLAARIGGEEFAIVLPGASALKAQALCERILQR 241 Query: 203 IENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRV 255 ++ ++ P H+T S GIA C P S ++ RAD+ALY AK++GRNR+ Sbjct: 242 FASTGMDCPGVPPFHVTFSGGIAT-CTTGVTCPASLLVDRADKALYEAKQAGRNRI 296 >gi|254459339|ref|ZP_05072760.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207083952|gb|EDZ61243.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 565 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 88/165 (53%), Gaps = 9/165 (5%) Query: 104 SRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ D LSGL N F Y E LSI+ D+D FK+IND +GH GD VI Sbjct: 401 AKTDLLSGLHNRRYFSEMSQKSFLQAKRYEENLSIILLDLDKFKKINDTYGHQTGDIVIK 460 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +D L + V R GGEEF ++ EA ++A ++RK IE+++I+ S Sbjct: 461 VTADILKYLNREDDIVARYGGEEFIILLPHTNLYEALVIAENIRKKIESTEIHSESDDIF 520 Query: 217 HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 H+T S G+A+ + E IS I R D A+Y AK+ GRN+V S Sbjct: 521 HVTASIGVAQLDTINDENISKTIQRCDNAMYKAKQRGRNKVFSLS 565 >gi|261820078|ref|YP_003258184.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] gi|261604091|gb|ACX86577.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] Length = 489 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 94/177 (53%), Gaps = 15/177 (8%) Query: 94 FISYNR-----ISQLSRIDCLSGLLNHSAFISSL-GSYN-------EKLSIVFFDIDYFK 140 F+S NR I S D L+ N AF+S L G N +L+++F DIDYFK Sbjct: 305 FVSMNRRLIKIIESNSLKDALTNTFNRRAFLSMLNGKQNVPAHKKKRQLTLLFLDIDYFK 364 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND +GH GD++I + L + R GGEEF AA G + +++ +A LR Sbjct: 365 QVNDTYGHACGDELIVSFARMLSANIRPSDILCRWGGEEFIIAAYGLTVEQSEAVAEALR 424 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255 ++ E++ + + G IH TIS G+A E I +I AD+ LY AK GRNRV Sbjct: 425 RLTESTPLTLHDGREIHFTISIGVAIFSQYEGGNIYDLIGLADEQLYKAKTQGRNRV 481 >gi|119474824|ref|ZP_01615177.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [marine gamma proteobacterium HTCC2143] gi|119451027|gb|EAW32260.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [marine gamma proteobacterium HTCC2143] Length = 562 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 10/199 (5%) Query: 69 LSLVIISITISLLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124 L+ VI+ + +S LL + S ++E + ++ L+ D L+ LLN F + Sbjct: 351 LTFVIVLLAVSGLLAIFNRRLQSEIRERKLVEEKLETLAYTDPLTNLLNRRGFSTRYADE 410 Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 Y + S++ D+D FK++ND +GH GD+V+ ++D L+ F GR GGE Sbjct: 411 LMRAQRYGDVFSVILIDLDLFKKVNDQYGHESGDRVLVSVADLLLKDTRETDFCGRFGGE 470 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EF +S EA + A L + I ++ + + +G + IT SAG+ E ++ I Sbjct: 471 EFILLLPNTSLVEATVYARRLCQHIGDNNVRLQNGRLVTITASAGVTEWLSEDKGEATIR 530 Query: 239 RADQALYVAKKSGRNRVVC 257 RADQALY AK +GRN+VV Sbjct: 531 RADQALYHAKNNGRNQVVA 549 >gi|326794921|ref|YP_004312741.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326545685|gb|ADZ90905.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 392 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 11/158 (6%) Query: 107 DCLSGLLN-------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN H S ++ + +S++FFDID+FK++ND +GH GD +A + Sbjct: 235 DELTGLLNRRYLEEIHQDVSESADAHKQPISVLFFDIDHFKRVNDEYGHQCGDITLAKVG 294 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D + F R GGEEF + S +QEA +A +LR+ IENS IN+ IH+T Sbjct: 295 DIVSNHTRVRDFSFRYGGEEF-VMIVRSDQQEAFAMAEELRQAIENSPINLGD-QYIHVT 352 Query: 220 ISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255 +S G+A R + I +I +AD +Y+AK++GRN+V Sbjct: 353 VSIGVATRASNDVCSIKDVIAKADSLMYLAKQAGRNQV 390 >gi|170727329|ref|YP_001761355.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169812676|gb|ACA87260.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 628 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 94/158 (59%), Gaps = 5/158 (3%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 L+ D L+ L N S + N KLS++ FD D+FK+INDNFGH +GDKV+ L Sbjct: 464 LALTDHLTKLPNRRQTYSEAEKHFSNNNSKLSLILFDADHFKKINDNFGHEIGDKVLFEL 523 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ ++ VGR+GGEEF +S ++A +AN L + I + ++ S P++ I Sbjct: 524 ANISNLMMRRADLVGRVGGEEFLIILPDTSLEQAIKIANRLVESIAKTDLSHLS-PTLSI 582 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++SAG+AE+ + ++ RAD ALY AK +GRNR V Sbjct: 583 SVSAGVAEKEQDASFTELLNRADTALYQAKTNGRNRAV 620 >gi|149181516|ref|ZP_01860011.1| diguanylate cyclase (GGDEF domain) [Bacillus sp. SG-1] gi|148850766|gb|EDL64921.1| diguanylate cyclase (GGDEF domain) [Bacillus sp. SG-1] Length = 346 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 8/171 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNF 146 +K+ +I + +L+ D L+GL N +L +K+SI++ DID+FKQIND F Sbjct: 179 VKQRYIKAEVMEELANTDYLTGLPNRRKIDQALHQALKKQQKISIIYLDIDHFKQINDTF 238 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+V+ +++ + V +GR GGEEF L + EAAILA +R I Sbjct: 239 GHTAGDEVLKEFTNETLEVLKEENMLGRWGGEEF-MIILKNDLNEAAILAEKIRAHIAQH 297 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +T S G+ + + T++ RAD+ALY AK SGRN+VV Sbjct: 298 RFEAVGS----LTASFGVTALQEGDTLDTLLNRADKALYKAKNSGRNKVVS 344 >gi|153002545|ref|YP_001368226.1| diguanylate cyclase [Shewanella baltica OS185] gi|151367163|gb|ABS10163.1| diguanylate cyclase [Shewanella baltica OS185] Length = 385 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 8/163 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +S L+ D L+GL N AF+ S + S N +S++ D+D FK+IND GH VGD Sbjct: 219 KELSTLASQDSLTGLFNRRAFMHNATSIIASENFPVSVLMLDLDNFKKINDVHGHNVGDT 278 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ +D L +GR GGEEFAA + ++A ++ LR IE +N Sbjct: 279 VLKLCADALQDGLKQYGIIGRFGGEEFAAILPRADSEQALAVSEKLRLAIETINVN---- 334 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P I ++IS G+A I ++ RAD+ALY AK GRN+V+ Sbjct: 335 PDIRLSISIGVATSSSVSSIEPLLIRADKALYEAKSKGRNQVI 377 >gi|295700242|ref|YP_003608135.1| diguanylate cyclase [Burkholderia sp. CCGE1002] gi|295439455|gb|ADG18624.1| diguanylate cyclase [Burkholderia sp. CCGE1002] Length = 402 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 8/166 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPV 150 R+ +L+ ID L+G L AFI+ + E KLSI DID FK IND FGH Sbjct: 221 ERMERLATIDDLTGALGRRAFIARTEALFELAKVAKSKLSIAILDIDNFKSINDRFGHAA 280 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ +A ++ + +GR+GGEEFA + ++EAA L N LR ++ S Sbjct: 281 GDQALAHVALTISRELRQTDVLGRIGGEEFALLMPLTGKEEAARLTNRLRTLVAASVARA 340 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +G + T+SAG+ E + +++++ RAD ALY AK +GRN V+ Sbjct: 341 PTG-DVACTLSAGVDEFGDGDTVASVMARADTALYAAKANGRNCVM 385 >gi|116328680|ref|YP_798400.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330663|ref|YP_800381.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121424|gb|ABJ79467.1| Response regulator, GGDEF family [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124352|gb|ABJ75623.1| Response regulator, GGDEF family [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 352 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 102/182 (56%), Gaps = 9/182 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 S L + + +R+ +L+ +D ++GL H F + L E+ L+++F D+D FK Sbjct: 170 STLAGIAVENSRLYELATVDMMTGLKVHHYFQTKLKEEMERCRKKKSHLTLLFTDVDNFK 229 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 + ND GH GD+V+ ++ QL+ G R GGEEF G+ + + +R Sbjct: 230 KFNDTHGHQAGDQVLIEVAKQLIRKAGKYDIPARYGGEEFCLIMPGADLERGYEMGETIR 289 Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258 K +E S + N + GP + +T+S G++E K+ + +I R+D+ALY+AK SG+N+ +C+ Sbjct: 290 KAVEASSVKNPNGGPDLKVTLSVGVSEFWPKDKNNRDLIERSDKALYMAKHSGKNQTICY 349 Query: 259 SD 260 + Sbjct: 350 KE 351 >gi|332305797|ref|YP_004433648.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173126|gb|AEE22380.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 393 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 99/167 (59%), Gaps = 9/167 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-ISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + + D LSG+ N AF + S +N + LS++ D+D+FK +ND +GH G Sbjct: 226 KLQREANYDALSGIFNRRAFNLQSAQQFNKSRENDQPLSVLMCDVDFFKNVNDTYGHSTG 285 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI ++ ++ V R GGEEF A +S+ EA+I+A +R+ IE+ +INI Sbjct: 286 DEVIKMVAQVMLENTRNSDLVARYGGEEFIALLPRTSKHEASIVAEKIRRSIESIEINID 345 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + TIS GI++ + I +I RAD+ALY AK++GRN+V+ Sbjct: 346 NH-QLRFTISIGISDLKSADSNIDNVILRADEALYNAKEAGRNQVLM 391 >gi|27380072|ref|NP_771601.1| hypothetical protein bll4961 [Bradyrhizobium japonicum USDA 110] gi|27353226|dbj|BAC50226.1| bll4961 [Bradyrhizobium japonicum USDA 110] Length = 471 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 11/174 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141 ++ E ++ +R + + D L+G+LN F + G E+ ++++ FDID+FK Sbjct: 271 LVSERAVTAHRTA--ASTDPLTGMLNRRGFSEACGRVIEREAKAGRPVTVMIFDIDHFKS 328 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGHP GD+++ S +V GR+GGEEF AA L S +E ++A +R+ Sbjct: 329 INDRFGHPAGDEMLKLFSTVVVSNLRITDMSGRIGGEEF-AALLPCSLEEGVLVAERVRE 387 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E S + + GP + T+S G+A + ++ AD ALY AK+ GRNRV Sbjct: 388 AFETSGVVVDEGP-VDTTVSIGVAGGPAGTELEVLLASADTALYQAKRGGRNRV 440 >gi|254458097|ref|ZP_05071523.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207084933|gb|EDZ62219.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 516 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 85/160 (53%), Gaps = 8/160 (5%) Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S+ D L+ L N A +G Y S+V FD+D+FK +NDNFGH GD V+ Sbjct: 355 SKEDFLTKLYNRRALDDFMGVKEAEFERYGHNFSVVMFDLDHFKSVNDNFGHEAGDAVLG 414 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + L + VGR GGEEF A + + AI A +RK +E ++ + G I Sbjct: 415 AFAKILKKEARSVDVVGRFGGEEFMALLSETDTEGGAIFAEKVRKHVEKARF-MYKGERI 473 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S GI+ER +S +I AD+ LY AKK GRN+V Sbjct: 474 EVTVSCGISERKKHTSLSNVINSADEYLYKAKKDGRNQVA 513 >gi|195952587|ref|YP_002120877.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp. Y04AAS1] gi|195932199|gb|ACG56899.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp. Y04AAS1] Length = 772 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N + L Y + LS++ FDID+FK IND+FGH VGDKV+ ++ Sbjct: 618 DPLTGIYNRRYLENKLEEYVKLAKRHDRPLSLIMFDIDFFKHINDSFGHDVGDKVLKAIA 677 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + R GGEEF A +++++A ILA LR +I N ++ G I++T Sbjct: 678 KVVSENIRNTDIFARYGGEEFVIIAPETTKEDAKILAEKLRSLIRN--LHFEEG--INVT 733 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+A + T++ RAD+ALY AKK+GRN+VV Sbjct: 734 CSFGVASLEKHDTKETLLKRADEALYEAKKTGRNKVV 770 >gi|39935542|ref|NP_947818.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009] gi|192291133|ref|YP_001991738.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] gi|39649395|emb|CAE27917.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris CGA009] gi|192284882|gb|ACF01263.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 355 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 9/179 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L +S + I S D L+GL N F I + G+ + LS++ DID+FK ND Sbjct: 167 LQVSLDAIRAESLTDPLTGLGNRKHFDRTVQEAIRNAGASQQPLSLLMMDIDHFKSFNDT 226 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD+V+ + L F R GGEEFA + ++A I+A+++R+++ + Sbjct: 227 YGHLTGDQVLRLVGMTLKQSIKGQDFTARYGGEEFAVVLPNTPMRQAIIVADNIRRLVMS 286 Query: 206 SQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ S I +T+SAG++ + +I RAD LY AK++GRNRV+C +D E Sbjct: 287 KELKKKSTGEILGRVTLSAGVSTLKPNDDAEALIERADACLYAAKRNGRNRVICETDPE 345 >gi|303245949|ref|ZP_07332231.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio fructosovorans JJ] gi|302492732|gb|EFL52600.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio fructosovorans JJ] Length = 622 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 98/177 (55%), Gaps = 9/177 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 EL + L+ D L+G+ N F+ Y + +++ D+D+FK +ND Sbjct: 446 ELERRVEELHLLATKDALTGISNRRHFLEQASMELVRAKRYGKPFALLMLDVDHFKAVND 505 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH VGD+V+ L +L T VGR+GGEEFAA + + + A +A LR+ + Sbjct: 506 THGHDVGDEVLRSLGAELQGTVRTSDHVGRIGGEEFAALIIEADIENAREVAERLRQKLY 565 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S I+ +GP + T+S G+AE + + + ++ RAD ALY AK++GRNRV C+ + Sbjct: 566 SSCIDTRTGP-VSYTVSIGLAEYQREDDSVDDMLRRADLALYHAKRNGRNRVCCYGE 621 >gi|154246138|ref|YP_001417096.1| diguanylate cyclase [Xanthobacter autotrophicus Py2] gi|154160223|gb|ABS67439.1| diguanylate cyclase [Xanthobacter autotrophicus Py2] Length = 496 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 93/174 (53%), Gaps = 7/174 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140 ++ +E + +R+++L+ D L L N FI ++ Y L ++ D D FK Sbjct: 318 AMFEERRLLIDRLTRLASWDSLVELHNRRHFIERADREVAAAQRYGRDLVLLMLDADNFK 377 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ++ND +GH GD + +++ V GR+GGEEFA ++ LA LR Sbjct: 378 ELNDQYGHAAGDAALKMIAEACAAVARQTDVTGRIGGEEFAMLLPHATLDGGQALAERLR 437 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + IE + + I++G H+T+S GIA ++ + ++ AD+ALY AK++GRNR Sbjct: 438 RQIEATPVQIATGRPFHVTVSIGIARLGRRDGLDALMRAADRALYAAKRAGRNR 491 >gi|240137530|ref|YP_002962001.1| putative diguanylate cyclase; two GGDEF domains [Methylobacterium extorquens AM1] gi|240007498|gb|ACS38724.1| putative diguanylate cyclase; two GGDEF domains [Methylobacterium extorquens AM1] Length = 363 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 2/160 (1%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 Y +++++R D L+G LN + G E I+ D+D+FK IND FGH GD V+ Sbjct: 203 GYAAVARMARTDALTGALNRQGLAAETGGVTEA-GIIVADLDHFKAINDRFGHAAGDAVL 261 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + + + RLGGEEF G LA LR+ + S ++ G + Sbjct: 262 RDFAARAAALLPEGGHLARLGGEEFGIVLPGRDHNATTYLAERLRRAVGGSPVSW-KGSA 320 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+A E +S + RAD+ALY AK GRNRV Sbjct: 321 VPITVSLGVAMLRAGEALSESLERADKALYDAKTDGRNRV 360 >gi|160877266|ref|YP_001556582.1| diguanylate cyclase [Shewanella baltica OS195] gi|160862788|gb|ABX51322.1| diguanylate cyclase [Shewanella baltica OS195] gi|315269471|gb|ADT96324.1| diguanylate cyclase [Shewanella baltica OS678] Length = 385 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 8/163 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +S L+ D L+GL N AF+ S + S N +S++ D+D FK+IND GH VGD Sbjct: 219 KELSTLASQDSLTGLFNRRAFMHNATSIIASENFPVSVLMLDLDNFKKINDVHGHNVGDT 278 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ +D L +GR GGEEFAA + ++A ++ LR IE +N Sbjct: 279 VLKLCADALQDGLKQYGIIGRFGGEEFAAILPRADSEQALAVSEKLRLAIETINVN---- 334 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P I ++IS G+A I ++ RAD+ALY AK GRN+V+ Sbjct: 335 PDIRLSISIGVATSSSVSSIEPLLIRADKALYEAKSKGRNQVI 377 >gi|153828768|ref|ZP_01981435.1| GGDEF family protein [Vibrio cholerae 623-39] gi|148875721|gb|EDL73856.1| GGDEF family protein [Vibrio cholerae 623-39] Length = 976 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 853 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 912 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964 >gi|254225352|ref|ZP_04918964.1| GGDEF family protein [Vibrio cholerae V51] gi|125622193|gb|EAZ50515.1| GGDEF family protein [Vibrio cholerae V51] Length = 976 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 853 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 912 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964 >gi|262158980|ref|ZP_06030092.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|262169339|ref|ZP_06037031.1| GGDEF family protein [Vibrio cholerae RC27] gi|262022152|gb|EEY40861.1| GGDEF family protein [Vibrio cholerae RC27] gi|262029165|gb|EEY47817.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] Length = 960 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 778 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 837 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 838 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 896 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 897 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 948 >gi|15641365|ref|NP_230997.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591222|ref|ZP_01678523.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121728782|ref|ZP_01681796.1| GGDEF family protein [Vibrio cholerae V52] gi|147673928|ref|YP_001216913.1| GGDEF family protein [Vibrio cholerae O395] gi|153818345|ref|ZP_01971012.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|153822059|ref|ZP_01974726.1| GGDEF family protein [Vibrio cholerae B33] gi|227081524|ref|YP_002810075.1| GGDEF family protein [Vibrio cholerae M66-2] gi|254848475|ref|ZP_05237825.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|298498562|ref|ZP_07008369.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|9655846|gb|AAF94511.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546920|gb|EAX57071.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121628959|gb|EAX61412.1| GGDEF family protein [Vibrio cholerae V52] gi|126511092|gb|EAZ73686.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|126520392|gb|EAZ77615.1| GGDEF family protein [Vibrio cholerae B33] gi|146315811|gb|ABQ20350.1| GGDEF family protein [Vibrio cholerae O395] gi|227009412|gb|ACP05624.1| GGDEF family protein [Vibrio cholerae M66-2] gi|227013270|gb|ACP09480.1| GGDEF family protein [Vibrio cholerae O395] gi|254844180|gb|EET22594.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|297542895|gb|EFH78945.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 976 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 853 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 912 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964 >gi|163848602|ref|YP_001636646.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222526537|ref|YP_002571008.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] gi|163669891|gb|ABY36257.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222450416|gb|ACM54682.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] Length = 324 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 9/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + R ++L+R+D L+G+ N S F + Y L++ D+D+FKQIN Sbjct: 150 RELQRALAREAELARMDWLTGVYNRSHFYELARHEFAIATRYERPLTMCMLDVDHFKQIN 209 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGD+V+ ++ + T +GR GGEEF ++ A LA LR I Sbjct: 210 DRYGHLVGDQVLRAVAQTVAHQIRTADSIGRFGGEEFILLLPNTNLPSALTLAERLRVTI 269 Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 + Q++ G + TIS G+AER + I +I RAD+ALY AK+ GRN VV Sbjct: 270 ADLQVHTDRG-IVTATISVGVAERQSTDTTIERLIDRADRALYAAKRQGRNCVV 322 >gi|239937647|gb|ACS35620.1| putative GGDEF domain protein [Aeromonas sp. YS3] Length = 232 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 93/173 (53%), Gaps = 18/173 (10%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFG 147 + L S + +L+ D L+GL N A + LG + L+++ DID+FKQIND G Sbjct: 55 RRLHRSSRHLYKLATFDQLTGLPNRRALLERLGQQWLHETPLTLLIIDIDHFKQINDKHG 114 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI---LANDLRKIIE 204 H GD+ I L+ +L +GR GGEEF A Q+ A LA LR Sbjct: 115 HQAGDQAIRQLARELKSWAPDQQLIGRWGGEEFLVAMT----QDGATCWRLAEQLR---- 166 Query: 205 NSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+I + P H+TIS G+AER + +S +I+RAD A+Y AK+ GRN+ V Sbjct: 167 -SRIAYLAAP--HMTISIGVAERSTQDDSLSQLIHRADMAMYQAKRQGRNQTV 216 >gi|327484024|gb|AEA78431.1| GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 976 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 853 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPQQAWGYF-EKLRCKI 912 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964 >gi|149189896|ref|ZP_01868175.1| GGDEF family protein [Vibrio shilonii AK1] gi|148836211|gb|EDL53169.1| GGDEF family protein [Vibrio shilonii AK1] Length = 317 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 64/167 (38%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 96 SYNRISQLSRIDCLSGLLNH----SAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S ++++L R D L+GL N S FI +S+ + ++V FDID+FK++NDN+GH Sbjct: 148 SNEKLTELGRTDGLTGLFNRAYWESQFIEEFNSVQTTGRTSTLVMFDIDHFKRVNDNYGH 207 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD VI + QL+ GR GGEEFA ++ +A+ A LRK +E + Sbjct: 208 ATGDNVIKETAQQLLKAARGSDVCGRYGGEEFAVLLTDTTADQASYFAERLRKRVEELCL 267 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRN 253 G S+ TIS GI E C E + + + RAD+ALY +K++GRN Sbjct: 268 EF-DGQSLQYTISLGITE-CSAEDNNHVDWLKRADKALYQSKEAGRN 312 >gi|330971107|gb|EGH71173.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 358 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 113/216 (52%), Gaps = 12/216 (5%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 L P L + + + + + +T + +G++S + +L+ N + ++SR D L+GLL Sbjct: 134 ALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 193 Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 NH A + SS +Y E + I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 194 NHGAWKDLLDLEYASSQNAYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALIEN 252 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 +GR GG+EF +S +A + LR I+ + + +++S GIA Sbjct: 253 LRDSDLIGRCGGDEFCVILPDTSLLQAKEILERLRLAIDEMTYTLHC--DLKVSLSIGIA 310 Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + P S+ ++ AD+ALY+AK +GRNRV D Sbjct: 311 AYSPEMPDASSWLHEADKALYLAKSTGRNRVASPQD 346 >gi|78358791|ref|YP_390240.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221196|gb|ABB40545.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 436 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/192 (35%), Positives = 100/192 (52%), Gaps = 11/192 (5%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 V++S+ ++L S++ E + + + +R D L+GL N A ++ L Sbjct: 230 VLVSLVFGIMLMMGVSSMINERLVQM--LEKEARTDPLTGLGNRRALYTAAAHHVARLHR 287 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 E L I+ D+D FK +ND FGHP GD ++ + L F + R GGEEF A Sbjct: 288 LCEPLVILVMDLDRFKSVNDKFGHPAGDALLRHFAAILQKQFRGTDQLFRFGGEEFVALL 347 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQA 243 S E+ A LA LR+ + + + G SI +T+S GIA +EP I+ + RADQA Sbjct: 348 QPSDERGAVCLAERLRREVAACPLQL-GGASIAVTVSIGIANMLPEEPDITRALGRADQA 406 Query: 244 LYVAKKSGRNRV 255 LY AK GRNRV Sbjct: 407 LYKAKAGGRNRV 418 >gi|310778304|ref|YP_003966637.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] gi|309747627|gb|ADO82289.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] Length = 465 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 11/161 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ +D L+ L N L Y K+S++ D+D+FK++NDNFGHP GD V+ Sbjct: 285 LATVDGLTKLWNRKTIEGRLREEFDRSQRYRSKMSVILLDVDHFKKVNDNFGHPTGDLVL 344 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S+ L F+GR GGEEF + + ++ +A LR+ IE+ + S Sbjct: 345 EKISEILKNTLRKTDFIGRWGGEEFIVVCVETDQRAVWKVAEKLRQEIEHYNFGLES--- 401 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +TIS G A E + I+ RAD +Y AKK+GRN+ + Sbjct: 402 -QVTISLGTATLDRGESLEDILKRADDNMYRAKKAGRNKTI 441 >gi|66046991|ref|YP_236832.1| GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63257698|gb|AAY38794.1| GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 358 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 113/216 (52%), Gaps = 12/216 (5%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 L P L + + + + + +T + +G++S + +L+ N + ++SR D L+GLL Sbjct: 134 ALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 193 Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 NH A + SS +Y E + I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 194 NHGAWKDLLDLEYASSQNAYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALIEN 252 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 +GR GG+EF +S +A + LR I+ + + +++S GIA Sbjct: 253 LRDSDLIGRCGGDEFCVILPDTSLLQAKEILERLRLAIDEMTYTLHC--DLKVSLSIGIA 310 Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + P S+ ++ AD+ALY+AK +GRNRV D Sbjct: 311 AYSPEMPDASSWLHEADKALYLAKSTGRNRVASPQD 346 >gi|163851405|ref|YP_001639448.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|254561166|ref|YP_003068261.1| hypothetical protein METDI2743 [Methylobacterium extorquens DM4] gi|163663010|gb|ABY30377.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|254268444|emb|CAX24401.1| hypothetical protein METDI2743 [Methylobacterium extorquens DM4] Length = 298 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/167 (39%), Positives = 91/167 (54%), Gaps = 12/167 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+GLLN AF+ +K L V DID+FK+IND GH VGD I Sbjct: 131 RLAETDSLTGLLNRRAFLQRTREAAQKAGSFGHLCAVILDIDHFKRINDEHGHDVGDAAI 190 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ ++ G GRLGGEEFA G EA +A+ LR + +I + GP Sbjct: 191 KAVAG-MIEAEG---IAGRLGGEEFAVMLAGQRLTEAEAVASRLRLKTSDLRIRSTKGP- 245 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDI 261 + +T S G++E E + ++ RAD ALY AK +GRNRVV SD+ Sbjct: 246 VRLTCSFGVSEWSEGETVEGLLKRADIALYEAKTTGRNRVVSAMSDL 292 >gi|295700884|ref|YP_003608777.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1002] gi|295440097|gb|ADG19266.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1002] Length = 428 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 68/158 (43%), Positives = 91/158 (57%), Gaps = 12/158 (7%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N F + +L + + KLSI DIDYFK+IND+FGH +GD+V+ ++ Sbjct: 271 DELTGLPNRREFADTVENLLASDSKLSIFLLDIDYFKKINDSFGHDIGDEVLRVMAK--- 327 Query: 164 VVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHI 218 VV +G R GGEEF AA G ++A +A +LR+ IE N + G I Sbjct: 328 VVMSADWRIGVFARWGGEEFVAALPGLDIEQATSVAENLRQTIEQQNFEHPWRLGKPIPF 387 Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 T+S G+ ER E + I+ RAD ALY AK SGRNRV Sbjct: 388 TVSIGVTERRPGENDVGAIVKRADLALYRAKDSGRNRV 425 >gi|189426365|ref|YP_001953542.1| diguanylate cyclase [Geobacter lovleyi SZ] gi|189422624|gb|ACD97022.1| diguanylate cyclase [Geobacter lovleyi SZ] Length = 307 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 106/191 (55%), Gaps = 11/191 (5%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136 YI+ + + I +++ Q++++D L+G+ N + L E+ LSI+ DI Sbjct: 119 YITVQDVTDFVIYEHKLIQMAKVDGLTGVFNRRYLDTRLQEELERSRRHGNPLSIMMLDI 178 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND GH GD + +S+ L+ + T +GR GGEEF +S ++A +LA Sbjct: 179 DHFKEINDTHGHICGDYTLRKISELLLELVRTSDILGRYGGEEFCCILPETSFEQALVLA 238 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 R + SQ + + S +T+S G+ + + + +II RAD ALY AK++GRNR V Sbjct: 239 ERCRTQVAASQFSCTDHQS-RVTVSIGVTDLHRDDTLDSIIKRADDALYQAKRTGRNR-V 296 Query: 257 CFS--DIENNT 265 C S +EN T Sbjct: 297 CSSPVPVENAT 307 >gi|219847926|ref|YP_002462359.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus aggregans DSM 9485] gi|219542185|gb|ACL23923.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus aggregans DSM 9485] Length = 312 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 96/174 (55%), Gaps = 9/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + R ++L+RID L+G+ N S F + Y++ L+I FD+D+FK IN Sbjct: 138 RELQRALAREAELARIDWLTGVYNRSHFYELATYEFAIATRYDQPLAICMFDVDHFKHIN 197 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GD+V+ ++ T +GR GGEEF ++ + LA LR + Sbjct: 198 DQYGHLIGDQVLRTIAQTAARQIRTADCIGRFGGEEFILLLPNTTMEAGLNLAERLRVAV 257 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 +I+ G +I TIS G+A R + I II RADQALY AK+ GRN VV Sbjct: 258 AALEIHTEKG-TITATISLGVAGRQPADTMIERIIDRADQALYAAKRQGRNCVV 310 >gi|77919891|ref|YP_357706.1| sensor histidine kinase/GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380] gi|77545974|gb|ABA89536.1| sensor histidine kinase/FOG: GGDEF domain protein [Pelobacter carbinolicus DSM 2380] Length = 422 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 99/173 (57%), Gaps = 13/173 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIN 143 KEL L+R+D L+GL N AF + + ++ SI+ DID+FK+IN Sbjct: 244 KELETQKKIAENLARLDPLTGLSNRRAFFEYGLLLENQIARHHHHFSIIMLDIDHFKKIN 303 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GD+ + L++ L + + +GRLGGEEFA +S +EAAI++ L+ I Sbjct: 304 DCYGHEMGDEALKTLAEHLNAIVRSSDILGRLGGEEFAIIMPHASSEEAAIMSERLKTAI 363 Query: 204 ENSQINISSGPS-IHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253 S+I +S I T+S GIAE C+++ S ++ AD+ALY AK GRN Sbjct: 364 --SKIVLSDNEQRIRFTVSFGIAE-CNEKITSFQQVLNNADKALYQAKNEGRN 413 >gi|183179352|ref|ZP_02957563.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|183012763|gb|EDT88063.1| GGDEF family protein [Vibrio cholerae MZO-3] Length = 976 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 853 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 912 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964 >gi|254286550|ref|ZP_04961506.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|150423308|gb|EDN15253.1| GGDEF family protein [Vibrio cholerae AM-19226] Length = 976 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 853 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 912 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964 >gi|153825257|ref|ZP_01977924.1| GGDEF family protein [Vibrio cholerae MZO-2] gi|149741085|gb|EDM55144.1| GGDEF family protein [Vibrio cholerae MZO-2] Length = 976 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 794 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 853 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 854 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYF-EKLRCKI 912 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 913 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 964 >gi|15605636|ref|NP_213011.1| hypothetical protein aq_035 [Aquifex aeolicus VF5] gi|2982791|gb|AAC06416.1| hypothetical protein aq_035 [Aquifex aeolicus VF5] Length = 431 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 7/167 (4%) Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++ D L+GL N F ++ Y SI+ DID FK+IND +GH VGD Sbjct: 261 ERMALTDPLTGLYNRRVFTEMAEKELAKAKRYGYNFSILMIDIDNFKKINDTYGHDVGDL 320 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ +S+ L V R GGEEF ++ A A LR++IE + I + +G Sbjct: 321 VLKKISEILKRNVRGADLVARFGGEEFIVMLSNTNLNGAVKKAEQLRRMIEQTPIELPNG 380 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +T+S G++ E + +I ADQALY AK+ G+NRV F + Sbjct: 381 EKLRVTVSIGVSTYRGHESLEELIKEADQALYEAKRKGKNRVEVFRE 427 >gi|209519573|ref|ZP_03268365.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. H160] gi|209499990|gb|EEA00054.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. H160] Length = 427 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N F + +L + KLSI DIDYFK+IND++GH GD+V+ L+ Sbjct: 270 DELTGLPNRREFADTVENLLGTDSKLSIFILDIDYFKKINDSYGHDTGDEVLRVLAK--- 326 Query: 164 VVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHI 218 VV +G R GGEEF AA G ++A +A+DLR IE G I Sbjct: 327 VVMNADRRIGVFARWGGEEFVAALPGLDIEQATSIADDLRLTIEQQNFEHIWRLGKPIPF 386 Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 T+S G+ ER +E + I+ RAD ALY AK +GRNRV Sbjct: 387 TVSIGVTERQPRENDVGAIVKRADLALYRAKDNGRNRV 424 >gi|332799635|ref|YP_004461134.1| GAF sensor-containing diguanylate cyclase [Tepidanaerobacter sp. Re1] gi|332697370|gb|AEE91827.1| diguanylate cyclase with GAF sensor [Tepidanaerobacter sp. Re1] Length = 567 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 95/171 (55%), Gaps = 9/171 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHP 149 ++ SQ++ D L+GL NH+ S + + S++ D+D+FK ND +GH Sbjct: 389 FDETSQMAITDGLTGLYNHTYIYSEMERQMRGINNAGGIFSLIIIDVDHFKVYNDMYGHI 448 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD ++ L++ L +GR GGEEFA G EA I+A +RKI+E + + Sbjct: 449 VGDIILKNLAEVLKKNVRDKDIIGRYGGEEFAIILPGIPSLEAMIIAERIRKIVEKTALA 508 Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA-LYVAKKSGRNRVVCF 258 +I+ITISAGIA + + ++ +ADQA L+ AKK GRNRVV F Sbjct: 509 TVENENIYITISAGIAAYPTNAASVEDLVDKADQAMLFGAKKEGRNRVVIF 559 >gi|253686941|ref|YP_003016131.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753519|gb|ACT11595.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 489 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 96/185 (51%), Gaps = 16/185 (8%) Query: 94 FISYNR-----ISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFK 140 F+S NR I S D L+ N AF+S L +L+++F DIDYFK Sbjct: 305 FVSMNRRLIKIIESNSLKDALTNTFNRRAFLSMLNGRQGLLMNKRKRQLTLLFLDIDYFK 364 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND +GH GD++IA + L + R GGEEF AA + +++A +A LR Sbjct: 365 QVNDTYGHASGDELIASFARMLSANIRPSDILCRWGGEEFVIAAYDLTAEQSAAMAETLR 424 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258 + E++ + +S G I TIS G+ E +T +I AD+ LY AK GRNR VC Sbjct: 425 HLTESTPLVLSDGREIRFTISIGVVTFPQYEGGNTYDLIGLADEQLYKAKAQGRNR-VCL 483 Query: 259 SDIEN 263 +E+ Sbjct: 484 RLVED 488 >gi|254507955|ref|ZP_05120083.1| ggdef family protein [Vibrio parahaemolyticus 16] gi|219549063|gb|EED26060.1| ggdef family protein [Vibrio parahaemolyticus 16] Length = 323 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 95/167 (56%), Gaps = 7/167 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKV 154 + QL+ D L+G+ N A + + Y+ + LS++ D+DYFKQ+ND +GH VGDKV Sbjct: 153 LGQLASRDSLTGVYNRHALVHNFNRYHNESAKVPLSLLILDLDYFKQVNDQYGHDVGDKV 212 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + L+ V R+GGEEF A S+ Q A A +R+ IE + + P Sbjct: 213 LV-ETAALLDALCDEHLVYRIGGEEFCIALHNSNLQHAKYKAELIRQAIEQYSFSGAEAP 271 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I +T+S G+ E H + + +++ AD+ LY AKK+GRN+V+ ++ Sbjct: 272 -IKLTVSIGVYECHHFDSLESVLKEADKELYKAKKNGRNQVMVSQEV 317 >gi|311235013|gb|ADP87867.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris RCH1] Length = 572 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 9/167 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152 + +++ +D L+G+ N + F+ +L ++ S++ D+D FK +ND +GH VGD Sbjct: 389 LRRMASMDALTGVSNRATFMETLADMMQRCCHDRAVASVLVMDVDNFKLVNDTWGHAVGD 448 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI--NI 210 +V+ L +V + T VGRLGGEEF G + A +A LR I ++ + Sbjct: 449 EVLRRLGRAMVPLLRTVDTVGRLGGEEFGVLLPGVGPEAACCVAERLRAAIAAMEVPCDD 508 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G ++ +T+S G+A ++ ++ AD+ALY AK SGR+RVVC Sbjct: 509 GRGEALRVTVSVGVASCPPYHSVTEVLRAADKALYRAKASGRDRVVC 555 >gi|239831922|ref|ZP_04680251.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239824189|gb|EEQ95757.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 275 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 120/254 (47%), Gaps = 20/254 (7%) Query: 12 WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71 W C + + + FS+ +++ F G TP I+ +LS Sbjct: 8 WECEGMKKTALVKAALITLSVVAFSLGATSIV------AFSAGATP-----GIIALSLSA 56 Query: 72 VIISITISLLLGYI--SGSILKELFISYNR----ISQLSRIDCLSGLLNHSAFISSLG-- 123 I + T L YI LK+ ++ R + SRID ++GLLN A ++ Sbjct: 57 GIPAATAFPSLAYIFHQHGKLKDAYLQLERAHVELQARSRIDHMTGLLNREALFEAMKIS 116 Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 S E +++ D D+FK IND FGH VGD+ + ++ L V VGR+GGEEF Sbjct: 117 RSRIETGTLLVIDADHFKAINDTFGHGVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCV 176 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 G+S + +A +R +EN+ + + +TIS G+A E S ++ RAD+ Sbjct: 177 FLPGASGETGMRVAQRIRAEVENTPFHTTEYQVYPLTISIGVASAPKNETNSQVLSRADR 236 Query: 243 ALYVAKKSGRNRVV 256 LY+AK+ GRN VV Sbjct: 237 CLYMAKQRGRNCVV 250 >gi|120601468|ref|YP_965868.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris DP4] gi|120561697|gb|ABM27441.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris DP4] Length = 572 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 9/167 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152 + +++ +D L+G+ N + F+ +L ++ S++ D+D FK +ND +GH VGD Sbjct: 389 LRRMASMDALTGVSNRATFMETLADMMQRCCHDRAVASVLVMDVDNFKLVNDTWGHAVGD 448 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI--NI 210 +V+ L +V + T VGRLGGEEF G + A +A LR I ++ + Sbjct: 449 EVLRRLGRAMVPLLRTVDTVGRLGGEEFGVLLPGVGPEAACCVAERLRAAIAAMEVPCDD 508 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G ++ +T+S G+A ++ ++ AD+ALY AK SGR+RVVC Sbjct: 509 GRGEALRVTVSVGVASCPPYHSVTEVLRAADKALYRAKASGRDRVVC 555 >gi|37681146|ref|NP_935755.1| hypothetical protein VV2962 [Vibrio vulnificus YJ016] gi|37199897|dbj|BAC95726.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 479 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L+G N +F I + +N LSI+ DID+FKQ ND++GH GD Sbjct: 307 LRNLAATDPLTGAFNRRSFMEQAEKSIRTCQRWNCPLSIMILDIDHFKQFNDSYGHAAGD 366 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L + +GRLGGEEFA G E+EA +A LR ++EN Q+N Sbjct: 367 LVLVELVKMADLSTREIDIIGRLGGEEFAVVLPGLGEKEAFEVAKRLRSVVENMQVNYEQ 426 Query: 213 GPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256 P + +TIS G+A E P+ ++ +AD+ LY AK GRN V+ Sbjct: 427 QP-LQMTISIGVATLQPSELNTPLEQLMKQADEGLYYAKAHGRNCVI 472 >gi|315126888|ref|YP_004068891.1| sensory box/GGDEF protein [Pseudoalteromonas sp. SM9913] gi|315015402|gb|ADT68740.1| sensory box/GGDEF protein [Pseudoalteromonas sp. SM9913] Length = 323 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 101/186 (54%), Gaps = 17/186 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKL-SIVFFDIDYFKQ 141 KEL ++ Q+S+ D L+ L N H F+ + NE S++ FDID+FK+ Sbjct: 142 KELEELNKKLEQVSQTDSLTQLANRGHWEHLLHQEFLRT--KRNEGCCSLLIFDIDHFKK 199 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND+FGH GD+ + ++ L GR GGEEF L + +Q A + A LR+ Sbjct: 200 VNDDFGHSAGDEALRHIASLLKTALRETDIAGRYGGEEFVVTLLDTDKQGAIVFAERLRQ 259 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258 +IE S + ++H+ IS GIA C + I AD+ALY +K++GRN+V + Sbjct: 260 LIETSPAKYNEH-TVHMAISVGIA--CFDDQFKDHERWIEAADKALYHSKETGRNKVSVY 316 Query: 259 SDIENN 264 +DI+N+ Sbjct: 317 ADIKND 322 >gi|326201287|ref|ZP_08191159.1| diguanylate cyclase [Clostridium papyrosolvens DSM 2782] gi|325988855|gb|EGD49679.1| diguanylate cyclase [Clostridium papyrosolvens DSM 2782] Length = 362 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/196 (37%), Positives = 105/196 (53%), Gaps = 13/196 (6%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121 L VI+S T+ + Y L + + + ++ + S D L+GL N F I Sbjct: 167 LGTVIVSYTVYKYMIY-----LNNMSLLFRKLKEESTKDYLTGLNNVREFNKLFRLVIEK 221 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 S N+K S++ DID+FK IND GH GDKV+ + L T + R GGEEF+ Sbjct: 222 AVSNNQKFSLLLIDIDFFKNINDTHGHQSGDKVLKEIGKILKQNCRTDDNISRNGGEEFS 281 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRA 240 +S A +A +RKII +++ +SSG I++TIS GI+ I+ II RA Sbjct: 282 ILLENASNSMAIEIAERIRKIIADNEFEVSSGRKINVTISIGISSYPETVTDITQIIERA 341 Query: 241 DQALYVAKKSGRNRVV 256 D+ALY AK++GRN VV Sbjct: 342 DEALYKAKRNGRNLVV 357 >gi|330896910|gb|EGH28492.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 350 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 112/218 (51%), Gaps = 12/218 (5%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 L P L + + + + + +T + +G++S + +L+ N + ++SR D L+GLL Sbjct: 126 ALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 185 Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 NH A + SS +Y E + I DID+FK IND +GH +GD V+ +S+ L Sbjct: 186 NHGAWKDLLDLEYTSSQNAYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALTEN 244 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 +GR GG+EF + +A + LR I+ + + +++S GIA Sbjct: 245 LRDSDLIGRCGGDEFCVILPDTCLLQAKEILERLRLAIDEMTYTLHC--DLKVSLSIGIA 302 Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + P S+ ++ AD+ALY+AK +GRNRV D + Sbjct: 303 AYSPEMPDASSWLHEADKALYLAKSTGRNRVASHQDAQ 340 >gi|27364806|ref|NP_760334.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6] gi|27360951|gb|AAO09861.1| FOG: GGDEF domain protein [Vibrio vulnificus CMCP6] Length = 479 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L+G N +F I + +N LSI+ DID+FKQ ND++GH GD Sbjct: 307 LRNLAATDPLTGAFNRRSFMEQAEKSIRTCQRWNCPLSIMILDIDHFKQFNDSYGHAAGD 366 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L + +GRLGGEEFA G E+EA +A LR ++EN Q+N Sbjct: 367 LVLVELVKMADLSTREIDIIGRLGGEEFAVVLPGLGEKEAFEVAKRLRSVVENMQVNYEQ 426 Query: 213 GPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256 P + +TIS G+A E P+ ++ +AD+ LY AK GRN V+ Sbjct: 427 QP-LQMTISIGVATLQPSELNTPLEQLMKQADEGLYYAKAHGRNCVI 472 >gi|86750660|ref|YP_487156.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] gi|86573688|gb|ABD08245.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] Length = 381 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 100/180 (55%), Gaps = 13/180 (7%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDI 136 Y G L+E +Y RI +L+ +D L+G N + L + E+ LS+ D+ Sbjct: 204 YKRGLQLRE---AYRRIEELAELDELTGAFNRRCIMRMLDDEIARAERSATPLSLALIDL 260 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND+FGHP GD+V+ + + + GR GGEEF +S ++A L Sbjct: 261 DWFKRINDSFGHPTGDEVLRTFAITIFANIRSFDRFGRYGGEEFLLLLPNTSREDAHALL 320 Query: 197 NDLRKIIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + LR+I+ +++ ++ P + +T+SAG+ E +++ RAD ALY AK+ GRNR+ Sbjct: 321 DRLREIV--GELDWTAFSPGMRVTLSAGVTTMSPDETAESVLARADSALYAAKEKGRNRI 378 >gi|331270164|ref|YP_004396656.1| GGDEF domain-containing protein [Clostridium botulinum BKT015925] gi|329126714|gb|AEB76659.1| GGDEF domain protein, putative [Clostridium botulinum BKT015925] Length = 1816 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 60/130 (46%), Positives = 77/130 (59%), Gaps = 4/130 (3%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N+K SI+ FD+D+FK IND FGH VGDKV+ + + ++ GR GGEEF A Sbjct: 1508 NDKFSIIMFDLDHFKNINDTFGHQVGDKVLHSVCNTVMHNLRGEDICGRYGGEEFIAVLP 1567 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQAL 244 G +EA +A +R IE S+I G ITISAGIA C + +I +ADQAL Sbjct: 1568 GVDNKEALKIAERIRMAIEESKI---IGDETLITISAGIATYPCQAQLKRELIEKADQAL 1624 Query: 245 YVAKKSGRNR 254 Y+AK GRNR Sbjct: 1625 YMAKDLGRNR 1634 >gi|325293462|ref|YP_004279326.1| diguanylate cyclase [Agrobacterium sp. H13-3] gi|325061315|gb|ADY65006.1| diguanylate cyclase [Agrobacterium sp. H13-3] Length = 280 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 99/182 (54%), Gaps = 2/182 (1%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF 133 IS T+ L+ +++ ++ L S+ R +QLS+ D L+GL N S+ + + F Sbjct: 88 ISFTVGFLICWLNARQMQLLIQSHERFAQLSQTDALTGLHNRLGLYSNCVHLSTPYCVAF 147 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DID+FK +ND +GH GD VI+ ++ + F V R+GGEEF + ++ Sbjct: 148 IDIDHFKSVNDRYGHLAGDMVISSVAKTIREGFDEAAHVARMGGEEFVVVHTLAPDRFLE 207 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 L +R+ I + ++ I TIS G+A R ++E +++ AD ALY AK+SGRN Sbjct: 208 -LCEGVREKIATTTVHFQD-LQISTTISIGVALRGNREIFEKVMHSADMALYEAKRSGRN 265 Query: 254 RV 255 R+ Sbjct: 266 RI 267 >gi|157370758|ref|YP_001478747.1| diguanylate cyclase [Serratia proteamaculans 568] gi|157322522|gb|ABV41619.1| diguanylate cyclase [Serratia proteamaculans 568] Length = 500 Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 21/247 (8%) Query: 24 PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83 P +++ ++ FS+F +T+I + +++ + L GL + NL + ++ T+S+ LG Sbjct: 247 PMPILLWLAMSFSLF-STMIAVL-VYVLWCHLAIDLGL---ITTNLDMKMLQNTVSMRLG 301 Query: 84 YISGSILKELFISYN--------RISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSI 131 ++ S N R+ ++ D L+ +L SAF+ + E++ I Sbjct: 302 VALLALGPIAVASMNFARNALLQRLEHVANHDALTHVLTRSAFMQRGTRLVSQKGERICI 361 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DIDYFK IND FGH GD + + + GR+GGEEFA A + +Q+ Sbjct: 362 MMLDIDYFKSINDRFGHAGGDAALLSFTRAITGDLRDNDLFGRMGGEEFAIVAPIAQQQD 421 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAK 248 A LA LR +E IN+ +G ++ IT+S G+ C + + ++ AD A+Y AK Sbjct: 422 ALSLAERLRHRVEIESINMPAGAALQITVSIGMVT-CIGGSGQNLDNLLKIADLAVYKAK 480 Query: 249 KSGRNRV 255 SGRNRV Sbjct: 481 NSGRNRV 487 >gi|330957612|gb|EGH57872.1| GGDEF domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 358 Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 102/187 (54%), Gaps = 10/187 (5%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134 +G++S + +L+ N + +LSR D L+GLLNH A+ L S + + I Sbjct: 162 VGWLSHQVTLKLWEHRNILRKLSRTDSLTGLLNHGAWKDLLDLEFAKSRSLHRQCVIALI 221 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK IND +GH VGD V+ +S+ LV +GR GG+EF +S ++A Sbjct: 222 DIDHFKIINDTYGHLVGDTVLQNISEALVENLRDTDLIGRCGGDEFCVILPDTSSRQAEE 281 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 + LR+ I+ + + + +++S GIA + ST ++ AD+ALY AK +GRN Sbjct: 282 ILERLRQAID--EFTYALHCELRVSLSIGIAVYTPELTDASTWLHEADKALYFAKSTGRN 339 Query: 254 RVVCFSD 260 RVV D Sbjct: 340 RVVNAQD 346 >gi|330809202|ref|YP_004353664.1| diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377310|gb|AEA68660.1| putative diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 317 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 91/167 (54%), Gaps = 9/167 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +LS D L+GL N + ++L + Y LS+V DID+FK++ND +GH G Sbjct: 150 QLQKLSSTDRLTGLYNRGHWEANLKAAYARHQRYGHALSLVMLDIDHFKRVNDTYGHQAG 209 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKVI ++ L GR GGEEF + + A I A LRK +E +++ + Sbjct: 210 DKVIEHVAGLLREHVRDADVAGRYGGEEFGVVLSDTDKAGAQIFAERLRKAVETLEVHYN 269 Query: 212 SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257 +I TIS G+A+ + +I RAD+ALY +KKSGRNRV Sbjct: 270 D-QAIRFTISLGVADLSQPSNDHADLIARADEALYTSKKSGRNRVTV 315 >gi|296274238|ref|YP_003656869.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296098412|gb|ADG94362.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] Length = 348 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 89/174 (51%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 KEL IS ++ +L+ D L+ LLN I+ +N ++ DID+FK N Sbjct: 178 KELEISNKKLEKLASTDVLTKLLNRGKLNDFLESEINRASRFNHIFGVIIMDIDHFKSTN 237 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGDKV+ + L VGR GGEEF + + LA +LR II Sbjct: 238 DIYGHNVGDKVLEEFATILKTKTRVTDIVGRWGGEEFVIICPQTDIEGIKKLAEELRYII 297 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 EN+ +I T S GI C + I ++I RAD+ALY AK+ GRN+VV Sbjct: 298 ENNSFSIVGNK----TASFGITLYCEGDTIKSLISRADKALYRAKEEGRNKVVV 347 >gi|254560002|ref|YP_003067097.1| diguanylate cyclase [Methylobacterium extorquens DM4] gi|254267280|emb|CAX23112.1| putative diguanylate cyclase; two GGDEF domains [Methylobacterium extorquens DM4] Length = 363 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 2/160 (1%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +Y +++++R D L+G LN + G E I+ D+D+FK IND FGH GD V+ Sbjct: 203 AYAAVARMARTDALTGALNRQGLAAETGGVTEA-GIIVADLDHFKAINDRFGHAAGDAVL 261 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + + + RLGGEEF G LA LR+ + + + G + Sbjct: 262 RDFAARAAALLPEGGHLARLGGEEFGIVLPGHDHNATTYLAERLRRAVGGAPVPW-KGSA 320 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+A E +S + RAD+ALY AK GRNRV Sbjct: 321 VPITVSLGVAMLRTGEALSESLERADKALYDAKTDGRNRV 360 >gi|150019511|ref|YP_001311765.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] gi|149905976|gb|ABR36809.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] Length = 356 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 69/195 (35%), Positives = 108/195 (55%), Gaps = 13/195 (6%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121 +S++++S + L YIS + ++ Y ++ SR D L+GL N AF I + Sbjct: 166 ISIIMVSTVVYYELNYISKT--NKM---YKKLKFDSRKDFLTGLNNVRAFNGLLDKTIRN 220 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 E LSI+ DID+FK IND +GH GD V+ LS L+ T + R GGEEF Sbjct: 221 TLQKKENLSILMIDIDFFKHINDTYGHHSGDLVLKQLSKLLIDSCRTFDIISRNGGEEFT 280 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRA 240 A L + + A +A +RK +E + + + + IT+S GI+ + I+T++ +A Sbjct: 281 AVLLDCNYKHAVDIAEKIRKNVECNTFKLDNNATAKITVSIGISSYPDITKNINTLLSKA 340 Query: 241 DQALYVAKKSGRNRV 255 D ALY+AK++GRN+V Sbjct: 341 DNALYLAKRTGRNKV 355 >gi|213851901|ref|ZP_03381433.1| hypothetical protein SentesT_02792 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 269 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 30/267 (11%) Query: 19 LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67 + S+ + F++++ + F+ ++ ++ + + Y L P + L +L Sbjct: 3 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVQLN 61 Query: 68 ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114 N+ +++ +T++ +L Y I E ++ Y R+ ++ D L+G N Sbjct: 62 QYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 121 Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170 + S LG E +++ D+DYFK NDN+GH GD +A ++ + TP Sbjct: 122 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPAD 181 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229 V R GGEEF SS EAA++A ++ + E + +++S S +T+S GI Sbjct: 182 LVARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTA 241 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ II RAD+ALY AK+ GRNR V Sbjct: 242 GDTVTGIIARADEALYRAKQQGRNRWV 268 >gi|119776269|ref|YP_929009.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119768769|gb|ABM01340.1| diguanylate cyclase [Shewanella amazonensis SB2B] Length = 319 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 23/223 (10%) Query: 57 PFYGLEYILVENLSLV-IISIT-----ISLLLGYISGSILKELFI--SYNRISQLSRIDC 108 P G + +N++L+ + S+T IS+++ ++ + +L + + R+ LS+ D Sbjct: 101 PITGRAEFMYQNVTLLPLASLTGQITHISIIVYDVTDVAVNKLQLKNANERLEHLSQTDG 160 Query: 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L N + + Y + +S+V FDID FKQ+ND GH GDKVI ++ Sbjct: 161 LTQLHNRRHWQECMNREYERFNRYGDPVSLVMFDIDRFKQVNDEHGHVAGDKVIQHIAHL 220 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L GR GGEEFA G++ +EA LR+ + +S I G SI +TIS Sbjct: 221 LSQSLRETDCAGRYGGEEFAVVLTGTTAEEAYHFTERLREKVASSAIQF-GGKSIQVTIS 279 Query: 222 AGIAERCHKEPI----STIIYRADQALYVAKKSGRNRVVCFSD 260 GI C + S + ADQALY AK+ GRNR V +S+ Sbjct: 280 LGI---CGMDDFVDNESQWLACADQALYQAKQQGRNRTVIYSE 319 >gi|163850469|ref|YP_001638512.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163662074|gb|ABY29441.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 363 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 2/160 (1%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 Y +++++R D L+G LN + G E I+ D+D+FK IND FGH GD V+ Sbjct: 203 GYAAVARMARTDALTGALNRQGLAAETGGVTEA-GIIVADLDHFKAINDRFGHAAGDAVL 261 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + + + RLGGEEF G LA LR+ + + + G + Sbjct: 262 RDFAARAAALLPEGGHLARLGGEEFGIVLPGRDHNATTYLAERLRRAVGGAPVAW-KGSA 320 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+A E +S + RAD+ALY AK GRNRV Sbjct: 321 VPITVSLGVAMLRAGEALSESLERADKALYDAKTDGRNRV 360 >gi|240138569|ref|YP_002963041.1| hypothetical protein MexAM1_META1p1954 [Methylobacterium extorquens AM1] gi|240008538|gb|ACS39764.1| hypothetical protein MexAM1_META1p1954 [Methylobacterium extorquens AM1] Length = 298 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 14/168 (8%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GLLN AF+ GS+ L V DID+FK+IND GH VGD Sbjct: 131 RLAETDSLTGLLNRRAFLQRTREAAQMAGSFGH-LCAVILDIDHFKRINDEHGHDVGDAA 189 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I ++ ++ G GRLGGEEFA G EA +A+ LR + +I + GP Sbjct: 190 IKAVAG-MIEAEG---IAGRLGGEEFAVMLAGQRLTEAEAVASRLRLKTSDLRIRSTKGP 245 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDI 261 + +T S G++E E + ++ RAD ALY AK +GRNRVV SD+ Sbjct: 246 -VRLTCSFGVSEWSEGETVEGLLKRADIALYEAKTTGRNRVVSAMSDL 292 >gi|254521746|ref|ZP_05133801.1| diguanylate cyclase [Stenotrophomonas sp. SKA14] gi|219719337|gb|EED37862.1| diguanylate cyclase [Stenotrophomonas sp. SKA14] Length = 479 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/190 (35%), Positives = 104/190 (54%), Gaps = 19/190 (10%) Query: 78 ISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 + LLGY S+L ++ I R + L+R D L+GL N +F SLG+ + + Sbjct: 276 LGALLGYALRSVLSQVDIQRQRDELETLARRDALTGLGNRRSFDESLGAAHRRARRQGLG 335 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALG 186 L+++ DID+FK++ND +GHP GD+ + ++ L + G + R GGEEF AA Sbjct: 336 LAVLMIDIDHFKRLNDTYGHPEGDRRLRAVAAILDGCLQRGDDLLA-RYGGEEFIAALPS 394 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQA 243 + A L LR +E++ + + G +TIS G+A + +EP S ++ ADQA Sbjct: 395 AEATHALELGERLRAAVESAALPAADG---QVTISVGVAWQAAGDEREP-SDLVAHADQA 450 Query: 244 LYVAKKSGRN 253 LY AK+ GRN Sbjct: 451 LYRAKRGGRN 460 >gi|251788333|ref|YP_003003054.1| diguanylate cyclase [Dickeya zeae Ech1591] gi|247536954|gb|ACT05575.1| diguanylate cyclase [Dickeya zeae Ech1591] Length = 536 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/164 (39%), Positives = 90/164 (54%), Gaps = 7/164 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R+S + D LSG+LN + S+ G Y +K+S++ DID+FK IND+FGH +GD+V Sbjct: 363 RLSSEAHTDPLSGMLNRRGMLESMEEVRGEY-KKVSVIAIDIDHFKVINDSFGHDMGDEV 421 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I LS Q+ F V R+GGEEF G+ A ++A LR + N+ I + Sbjct: 422 IRKLSQQIRKNFRKTDLVCRIGGEEFLILLPGADIHVATVIAERLRNNVANT-IYMPGSQ 480 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +TIS G+ K + I AD ALY AK SGRN+VV Sbjct: 481 HHQVTISVGVTTFNPQKSTLDVAIKTADNALYKAKNSGRNQVVV 524 >gi|89093154|ref|ZP_01166104.1| GGDEF family protein [Oceanospirillum sp. MED92] gi|89082450|gb|EAR61672.1| GGDEF family protein [Oceanospirillum sp. MED92] Length = 344 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 8/170 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-----NE-KLSIVFFDIDYFKQINDNFGHPVG 151 N+ Q +R+D L+ L N AF + L +E S+V DID+FK+ ND +GH +G Sbjct: 173 NKTRQDARVDPLTNLFNRRAFDAELAQVVGLNGSEFTSSLVLVDIDHFKKFNDTYGHLMG 232 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ ++ L + PM R GGEEFA G+S+++A +A +R I+ +I Sbjct: 233 DKVLQYVGKLLKDICLEPMLPVRFGGEEFAVLMPGTSKEQAFEIAEKVRLKIQAIRIKQK 292 Query: 212 SGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I IT S G+++ E + +I R DQALY AK +GRN+VV S Sbjct: 293 KSGDIISSITASFGVSQLTDAETVEQLIERTDQALYQAKNNGRNQVVISS 342 >gi|146344104|ref|YP_001201960.1| two-component response regulator [Pseudomonas fluorescens SBW25] gi|146187916|emb|CAM96245.1| putative two-component response regulator with GGDEF and response regulator domains [Pseudomonas fluorescens SBW25] Length = 519 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 91/176 (51%), Gaps = 12/176 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----VFFDIDYFKQINDN 145 LK L R D L+GLLNH ++S + S+ V DID+FKQ+ND Sbjct: 342 LKALISRSKAFDSRMRRDPLTGLLNHGQLMASASRVSASGSVPNTMVMIDIDHFKQVNDT 401 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGHPVGDKV+ L++ L + F+GR+GGEEFA +G+ +A + + +R+I N Sbjct: 402 FGHPVGDKVLVGLAEVLSDNLRSTDFIGRMGGEEFAVLMVGAPMSDARNVIDRIREIFSN 461 Query: 206 SQINI------SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 Q SG T SAG+A +S + AD ALY AK GRNRV Sbjct: 462 LQFETGLQDQGESGKWFACTFSAGVALLDGSAAVS--MKAADHALYKAKHGGRNRV 515 >gi|54302166|ref|YP_132159.1| hypothetical protein PBPRB0486 [Photobacterium profundum SS9] gi|46915587|emb|CAG22359.1| hypothetical protein PBPRB0486 [Photobacterium profundum SS9] Length = 601 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/165 (42%), Positives = 88/165 (53%), Gaps = 13/165 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I LS D L+GL N S L S Y S++ FDID+FK+IND +GH VGD Sbjct: 440 IELLSITDSLTGLYNRYKLESVLLSESSRCDRYKNNFSVIIFDIDFFKKINDTYGHLVGD 499 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+ L V R GGEEF A + + I A LR +IEN Sbjct: 500 DVLIHLAKLLKENTSITDVVSRWGGEEFLIVACNINLHDTYIFAEKLRILIENYNF---- 555 Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 PSI +TIS G+A+ + E IS ++ RAD ALY AKK GRN+VV Sbjct: 556 -PSIGKMTISCGVAQYINNESISELVSRADFALYQAKKMGRNKVV 599 >gi|120555518|ref|YP_959869.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120325367|gb|ABM19682.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 316 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 110/217 (50%), Gaps = 17/217 (7%) Query: 57 PFYGLEYILVENLSLVIISI------TISLLLGYIS--GSILKELFISYNRISQLSRIDC 108 P G E + +NL++ I+ + LL+ ++ S + L + ++++LS D Sbjct: 100 PITGTEEYMFQNLTISPITAPNGEVEKVCLLVYDVTEFASSKRALERANEQLAKLSMTDR 159 Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+GLLN + Y + S+V FDID+FK +ND +GH GD+VI +D Sbjct: 160 LTGLLNRGTWENLVDAEYERFRRYGQATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADV 219 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 GR GGEEF + + A ++ +R+ IE S ++ S+G I T+S Sbjct: 220 TRNNIRQSDSAGRYGGEEFGIILPETDAESARVICERIREAIEKSTVSTSAG-DIQYTVS 278 Query: 222 AGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257 GIA+ E + +AD+ALY AK+SGRN+VV Sbjct: 279 MGIAQLTETPENYMQWMQKADEALYKAKESGRNKVVV 315 >gi|220929725|ref|YP_002506634.1| diguanylate cyclase [Clostridium cellulolyticum H10] gi|220000053|gb|ACL76654.1| diguanylate cyclase [Clostridium cellulolyticum H10] Length = 363 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 96/176 (54%), Gaps = 8/176 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + ++ + S D L+GL N F I S N K S++ DID+FK+IND GH Sbjct: 187 FKKLKEESTKDYLTGLNNVREFDKLFRLVIDRAVSNNHKFSLLLIDIDFFKKINDTHGHQ 246 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKV+ + L + R GGEEF+ +S +A +A +R+IIE ++ Sbjct: 247 AGDKVLKEIGKILRHNCRANDKISRNGGEEFSILLENASNSKAIEIAERIRRIIEENEFE 306 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 I+SG I++T+S GI+ I+ II RAD ALY AK+SGRN VV S I +N Sbjct: 307 ITSGRKINVTVSIGISSYPETVSDITQIIERADGALYKAKRSGRNLVVTDSVISDN 362 >gi|221065249|ref|ZP_03541354.1| diguanylate cyclase [Comamonas testosteroni KF-1] gi|220710272|gb|EED65640.1| diguanylate cyclase [Comamonas testosteroni KF-1] Length = 373 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 97/173 (56%), Gaps = 9/173 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQIN 143 +EL I ++ S +R D L+G+ N AF ++ +Y + L + FDID+FKQIN Sbjct: 188 RELEIQHSIASNAARTDDLTGVNNRRAFNEKAETMFAYTRRYGVPLCALLFDIDHFKQIN 247 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GDKV+ + Q+ GRLGGEEF G++ QEA +A +R + Sbjct: 248 DTHGHAAGDKVLQAVVRQIKSALREADLCGRLGGEEFGVLLAGTNMQEAVQIAERIRLAV 307 Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 + + ++ ++ +TIS G+AE +ST++ +AD A+Y AK +GRN+V Sbjct: 308 QAIKEPVND-TTLQVTISVGVAEADSACADVSTLLKQADAAMYRAKSNGRNQV 359 >gi|90412402|ref|ZP_01220406.1| hypothetical protein P3TCK_11474 [Photobacterium profundum 3TCK] gi|90326664|gb|EAS43063.1| hypothetical protein P3TCK_11474 [Photobacterium profundum 3TCK] Length = 622 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/165 (41%), Positives = 90/165 (54%), Gaps = 13/165 (7%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I LS D L+GL N S+ S Y S++ FDID+FK+IND +GH VGD Sbjct: 460 IELLSITDSLTGLYNRYKLESVLSSESSRCERYQSDFSVIIFDIDFFKKINDTYGHLVGD 519 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+ L R GGEEF A ++ EA I A LR +IEN Sbjct: 520 DVLIHLAQLLKENTRITDVASRWGGEEFLIVACNTNLHEAFIFAEKLRIVIENYNF---- 575 Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 PSI +TIS G+A+ +KE IS ++ RAD ALY AKK G+N+V+ Sbjct: 576 -PSIGKMTISCGVAQYINKETISELVSRADLALYQAKKMGKNKVI 619 >gi|254457588|ref|ZP_05071016.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales bacterium GD 1] gi|207086380|gb|EDZ63664.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales bacterium GD 1] Length = 396 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 11/170 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148 ++ ++S+L+ D L+G+ N F L Y KLS +FFDID+FK +ND +GH Sbjct: 231 NHEKLSKLAYFDNLTGIYNRRKFDEILKIETIRVHRYKRKLSALFFDIDHFKNVNDTYGH 290 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ +S+ + + + R GGEEF ++ EA ++A +RK I + Sbjct: 291 DTGDEVLKKMSNIIQLHTRDTDYFARWGGEEFILLLPETNVLEANLMAEKIRKTIFSYDF 350 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 N ++TIS G++E KE ST + R D+ALY AK GRNR + Sbjct: 351 NKVG----NLTISIGVSELKEKERSSTFLKRLDKALYKAKNDGRNRTIVL 396 >gi|302188603|ref|ZP_07265276.1| GGDEF [Pseudomonas syringae pv. syringae 642] Length = 316 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 112/216 (51%), Gaps = 12/216 (5%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 L P L + + + + + +T + +G++S + +L+ N + ++SR D L+GLL Sbjct: 92 ALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 151 Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 NH A + SS +Y E + I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 152 NHGAWKDLLDLEYASSQNAYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALIEN 210 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 +GR GG+EF + +A + LR I+ + + +++S GIA Sbjct: 211 LRDSDLIGRCGGDEFCVILPNTGLFQAKEILERLRLAIDEMTYTLQR--DLKVSLSIGIA 268 Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + P S+ ++ AD+ALY+AK +GRNRV D Sbjct: 269 AYSPEMPDASSWLHEADKALYLAKSTGRNRVASPQD 304 >gi|229523544|ref|ZP_04412949.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229337125|gb|EEO02142.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] Length = 731 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 549 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 608 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 609 DRYSHIIGDQAIVAVSQELLGYVGDNTRVARWGGEEFTILYVGDPQQAWGYFEK-LRCKI 667 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 668 E--QVDLSAVATGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 719 >gi|227822252|ref|YP_002826223.1| GGDEF family protein [Sinorhizobium fredii NGR234] gi|227341252|gb|ACP25470.1| GGDEF family protein [Sinorhizobium fredii NGR234] Length = 356 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 17/182 (9%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLS----IVFFDIDYFKQIN 143 +++ Y RI+ D L+ L N AF +L + NE+L ++ DID+FK++N Sbjct: 166 IRQELDEYKRIAN---TDSLTRLGNRRAFDETLAAVYNNEQLRNYTGLLVVDIDHFKKVN 222 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+FGHPVGDK+++ + + FV R GGEEFA S+++E A+ +R ++ Sbjct: 223 DSFGHPVGDKILSTVGTVIRANLRRDAFVARTGGEEFAVILSDSTQEECMQAADRIRSVL 282 Query: 204 -----ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +NS+ ++ GP IT+S G+ + + ++AD ALY AK SGRNR V F Sbjct: 283 ANTPFKNSKTGVNYGP---ITLSVGVCMATAADDPLDLYHKADIALYAAKNSGRNRTVLF 339 Query: 259 SD 260 + Sbjct: 340 EE 341 >gi|150018526|ref|YP_001310780.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] gi|149904991|gb|ABR35824.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] Length = 365 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 11/196 (5%) Query: 80 LLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKL 129 L++ YIS +F + Y ++ + D L+GL N F +S + + E+L Sbjct: 169 LIVSYISIKYADYIFETVRIYQKLRNEATKDYLTGLNNVREFDNSFNNISQRAVRKEEEL 228 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++F DID+FK+IND +GH GD ++ L+ L+ V R+GGEEF+ L S+ Sbjct: 229 SMLFIDIDFFKKINDTYGHNAGDTILKSLALILLDTCRAYDVVSRMGGEEFSIILLDCSD 288 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAK 248 +A +A LR+ +E++ IS I ITIS GIA + + ++ AD ALY AK Sbjct: 289 SKAVKIAERLREKVEDNDFYISDNKFIKITISIGIASYPNMTTQVDNLLEMADTALYQAK 348 Query: 249 KSGRNRVVCFSDIENN 264 +GRN+VV F++ E+ Sbjct: 349 NTGRNKVVLFNNEEHK 364 >gi|77918778|ref|YP_356593.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380] gi|77544861|gb|ABA88423.1| GGDEF domain containing protein [Pelobacter carbinolicus DSM 2380] Length = 431 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 98/177 (55%), Gaps = 10/177 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNE---KLSIVFFDIDYFK 140 +IL L + L+ ID L+GL N AF G Y+E ++++ D+D FK Sbjct: 255 TILGLLMAEKEKFKSLAEIDPLTGLYNRRAFFGLSGEILKKYSELDRPITVIMLDVDSFK 314 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDL 199 QIND +GH VGD+V+ LSD + F +GR+GGEEFA S ++ A L N L Sbjct: 315 QINDVYGHSVGDQVLVALSDLIKKTFRGSDVIGRIGGEEFAILCPNSDFVKDRAPLEN-L 373 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 RK IE QI+ + G I +T+S G + + +I +AD+ LY AK+SGRN +V Sbjct: 374 RKEIEGFQIS-AEGHEIKVTVSIGATTGKKTDDLGALIKQADKMLYRAKESGRNCIV 429 >gi|115523955|ref|YP_780866.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] gi|115517902|gb|ABJ05886.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] Length = 458 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/172 (40%), Positives = 93/172 (54%), Gaps = 13/172 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL R++ L+ D L+GL N F +L S Y LS+V FD+D FK +ND Sbjct: 276 ELRDRAKRLAVLATTDRLTGLYNRLKFDEALASEIARAKRYKTPLSLVMFDVDLFKTVND 335 Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GHP+GD+V+ LSD + + T MF R GGEEFA GS+ EA ++A LR I Sbjct: 336 RYGHPIGDRVLVGLSDLISSHLRETDMF-ARWGGEEFAILVTGSNHMEAHVVAEKLRIAI 394 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ IT S G+ E + T++ RAD ALY AK GRNRV Sbjct: 395 ----THVAFDQVGRITCSFGVTEYRDGDIPETLVDRADGALYQAKLKGRNRV 442 >gi|209885769|ref|YP_002289626.1| diguanylate cyclase [Oligotropha carboxidovorans OM5] gi|209873965|gb|ACI93761.1| diguanylate cyclase [Oligotropha carboxidovorans OM5] Length = 379 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 107/206 (51%), Gaps = 23/206 (11%) Query: 68 NLSLVIISITISLLLGYISGSILKELFIS--------YNRISQLSRIDCLSGLLNHSAFI 119 L L + +I+ +++G S S L+E F S Y RI +L+ D L+G N + + Sbjct: 176 TLLLFVFTISRCMMIGMFS-SALRESFYSQGLALKEAYRRIEELAEFDELTGAHNRRSIM 234 Query: 120 SSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 +L S+ D+D+FK+IND+FGHPVGD+V+ + + +F + Sbjct: 235 HALAEEAERAARSKSPCSVALIDLDWFKKINDHFGHPVGDEVLRTFA---ITLFANIRLI 291 Query: 173 ---GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 GR GGEEF + E A + + LR I+ + N S P + +T+SAG+A Sbjct: 292 DKFGRYGGEEFLLVLPEAGEDVAGRVVDRLRTIVADVDWN-SISPGVDMTMSAGVATLLP 350 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 E + +++ RAD ALY AK GRNR+ Sbjct: 351 GETVDSLLLRADVALYRAKDLGRNRI 376 >gi|162147651|ref|YP_001602112.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus PAl 5] gi|209542280|ref|YP_002274509.1| PAS/PAC sensor-containing diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5] gi|161786228|emb|CAP55810.1| putative signalling protein, GGDEF family [Gluconacetobacter diazotrophicus PAl 5] gi|209529957|gb|ACI49894.1| diguanylate cyclase with PAS/PAC sensor [Gluconacetobacter diazotrophicus PAl 5] Length = 602 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 4/158 (2%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF----FDIDYFKQINDNFGHPVGDKVIAF 157 Q + D L+GL N AF L S V D+D+FK IND +GHP+GD V+ Sbjct: 430 QAANTDELTGLPNRRAFFQVLDGQMAAASSVVAAAMLDLDHFKSINDKYGHPIGDIVLRR 489 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++ + V R+GGEEFA S A L + + + I++ +G + Sbjct: 490 VATVVRATLRDTDMVARIGGEEFAVLITSESRDRAISLIRRVVRAVSAESIDLPTGVRLQ 549 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +TISAGIA R E + ++ RADQALYVAK++GRNR+ Sbjct: 550 VTISAGIACREAGEDRNALMSRADQALYVAKRTGRNRL 587 >gi|149194839|ref|ZP_01871933.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus TB-2] gi|149134998|gb|EDM23480.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus TB-2] Length = 508 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 8/167 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++S+ + D L+ + N A + SS Y S+VFFDID+FK IND +GH Sbjct: 342 KKLSKEVKTDFLTNIANKKAIMEELKRQESSFKRYGTNYSVVFFDIDHFKNINDTYGHDA 401 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ L +GR GGEEF A ++ A A LRKI+E ++ + Sbjct: 402 GDVILKSLGLLFKRYARDVDMIGRFGGEEFVAILPNTNIDGACKFAEKLRKIVEKTKF-M 460 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I++T+S G+A R + + AD+ LY AK+SGRNR+VC Sbjct: 461 YKNTRINVTVSGGVASRNETNSMDETLKLADERLYKAKRSGRNRIVC 507 >gi|218529163|ref|YP_002419979.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] gi|218521466|gb|ACK82051.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] Length = 363 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 2/160 (1%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 Y +++++R D L+G LN + G E I+ D+D+FK IND FGH GD V+ Sbjct: 203 GYAAVARMARTDALTGALNRQGLAAETGGVTEA-GIIVADLDHFKAINDRFGHAAGDAVL 261 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + + + RLGGEEF G LA LR+ + + ++ G + Sbjct: 262 RDFAARATALLPEGCHLARLGGEEFGIVLPGHDHNATTYLAERLRRAVGGAPVSW-KGSA 320 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+A E ++ + RAD+ALY AK GRNRV Sbjct: 321 VPITVSLGVAMLRTGEALNESLERADKALYDAKTDGRNRV 360 >gi|88859082|ref|ZP_01133723.1| hypothetical protein PTD2_08759 [Pseudoalteromonas tunicata D2] gi|88819308|gb|EAR29122.1| hypothetical protein PTD2_08759 [Pseudoalteromonas tunicata D2] Length = 639 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 100/171 (58%), Gaps = 11/171 (6%) Query: 99 RISQLSRIDCLSGLLN-----HSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVG 151 R+++L+ D L+ L N H A I + E+ LSI+ FDID+FK+INDN+GHP G Sbjct: 471 RLNRLANTDSLTQLANRRYTFHFAKIVFKEAQIEQKPLSIIIFDIDHFKRINDNYGHPFG 530 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++D+ P +GR+GGEEF + +A +A +R++I +Q++ + Sbjct: 531 DEVLMAVADKAQAGLREPDLLGRIGGEEFMVVLKNTPINQAVEIAERMRELI--AQLSFA 588 Query: 212 SG-PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + +T S G+A+ + ++ AD+ALY AK +GRN+VVC D Sbjct: 589 AAQQQVKVTASFGVAQFNVDVDDFGSLFQHADEALYRAKNAGRNQVVCNKD 639 >gi|91976391|ref|YP_569050.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91682847|gb|ABE39149.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5] Length = 381 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 18/218 (8%) Query: 56 TPFYGLEYILVENL-SLVIISITIS--LLLGYISGSILKELFI-------SYNRISQLSR 105 TP + L+E L +++++ +T+ + +G S ++ + L+ +Y RI + + Sbjct: 163 TPLAMPQGSLLERLGTMLVLVLTVGRCMYIGMYSSALRESLYKRGLQLREAYQRIEEFAE 222 Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G N + L + LS+ D+D+FK+IND+FGHP GD+V+ Sbjct: 223 LDELTGSYNRRCIMRMLDDEIARADRSAAPLSLALIDLDWFKRINDSFGHPTGDEVLRTF 282 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + + GR GGEEF +S EA + + LR+I+E S P + + Sbjct: 283 AITIFANIRSFDRFGRYGGEEFLLLLPNTSRDEAHKMLDRLREIVEELDWTAFS-PGMRV 341 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+SAG+ E ++ RAD+ALY AK+ GRN++ Sbjct: 342 TLSAGVTAMAPNETAEAVLARADRALYAAKEDGRNKIA 379 >gi|319428543|gb|ADV56617.1| diguanylate cyclase [Shewanella putrefaciens 200] Length = 378 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 87/252 (34%), Positives = 129/252 (51%), Gaps = 24/252 (9%) Query: 25 HTFMIYFSIF-FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI-ISITISLLL 82 + F I+F + FSI+I IF + L Y+ LT +G+ L++N I + ++S LL Sbjct: 128 YPFFIFFVLIGFSIYIQ--IFFLTVALSYVFLTENHGVLDELIQNAYFQISVQSSVSTLL 185 Query: 83 GYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132 + S + YN + + S+ D L+G+ N F + L S + S++ Sbjct: 186 IMLVFSW--SYYHRYNLQLALEKSSQTDPLTGVANRRHFDNQLKSATTRSARSGVECSLI 243 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK+IND FGHP GD+VI L+D V V RLGGEEFA ++ +A Sbjct: 244 LLDIDHFKRINDTFGHPTGDRVICALADLCVKQSRATDLVARLGGEEFAIILPDTNITDA 303 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTI-------IYRADQAL 244 LA +RK +E+ + +G + TIS GI A +K +T I +AD AL Sbjct: 304 ENLAERIRKHVEDISVAGDAGEIVKWTISLGISALPLNKSSANTTEIVMEMFIRQADSAL 363 Query: 245 YVAKKSGRNRVV 256 Y AK +GRN+ V Sbjct: 364 YEAKNNGRNQTV 375 >gi|323487747|ref|ZP_08093005.1| YhcK [Planococcus donghaensis MPA1U2] gi|323398481|gb|EGA91269.1| YhcK [Planococcus donghaensis MPA1U2] Length = 370 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/187 (35%), Positives = 96/187 (51%), Gaps = 20/187 (10%) Query: 87 GSILKELFISYNRISQL--------SRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 G + +F+ Y R +Q S D L+GL N F IS+ NE+LS+ Sbjct: 179 GGLTSIVFVGYIRKTQYLLMKYEKDSTTDFLTGLNNVRQFDSIWNTLISNAAEKNERLSL 238 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK +ND +GHP+GDK++ L L + V R GGEEF+ Q Sbjct: 239 LMIDIDHFKHVNDTYGHPIGDKILVELGKVLKNSTRSFDVVSRNGGEEFSVMLPDCPHQY 298 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAK 248 A +A +R +E + IS IHIT+S G+A + E +S I+ AD LY AK Sbjct: 299 AIEIAERIRIAVEQHKFEISLKEEIHITVSIGVA--TYPETVSDTVQIVDVADDCLYTAK 356 Query: 249 KSGRNRV 255 ++GRNR+ Sbjct: 357 RTGRNRI 363 >gi|291286671|ref|YP_003503487.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus DSM 12809] gi|290883831|gb|ADD67531.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus DSM 12809] Length = 626 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 87/165 (52%), Gaps = 11/165 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI +LS D L+ L N L S +N V DID+FK +ND GH G Sbjct: 463 RIEELSVTDRLTSLYNRHKLDDVLQSEYSRHQRHNTDFCAVLIDIDHFKNVNDTHGHQTG 522 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ L++ L ++GR GGEEF A+ S+ + A LA LR+++E + I Sbjct: 523 DKVLVKLAELLKANTRESDYIGRWGGEEFLIIAVESNLEGTAFLAEKLRRMVEETDFPIV 582 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ITIS G A+ E I+ I RAD ALY AK++GRN++V Sbjct: 583 G----KITISLGAAQYKTGETIAHFINRADDALYTAKQTGRNKLV 623 >gi|153009474|ref|YP_001370689.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] gi|151561362|gb|ABS14860.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] Length = 263 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 112/219 (51%), Gaps = 14/219 (6%) Query: 47 NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI--SGSILKELFISYNR----I 100 +I F G+TP I+ LS I + T L YI S L++ ++ + + Sbjct: 25 SIVAFTSGVTP-----GIVALGLSAGIPAATAFPSLAYIFHQHSKLQDAYLQLEKAHVEL 79 Query: 101 SQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 SRID ++GLLN A ++ S E +++ D D+FK IND FGH VGD+ + Sbjct: 80 QARSRIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDTFGHGVGDRALKL 139 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++ L V VGR+GGEEF G+S + +A +R +EN+ + + Sbjct: 140 IAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGMRVAQRIRAEVENTPFHTTEYQVYP 199 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 200 LTISIGVASAPKNETNSQVLSRADRCLYIAKQRGRNCVV 238 >gi|197337034|ref|YP_002158471.1| sensor protein [Vibrio fischeri MJ11] gi|197314286|gb|ACH63735.1| sensor protein [Vibrio fischeri MJ11] Length = 320 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/201 (37%), Positives = 110/201 (54%), Gaps = 16/201 (7%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124 V ++SL+I +T I+ + L L S +++S LS+ID L+ L N + + S L Sbjct: 122 VSHISLIIHDVT------EIAKNTL-HLENSNHQLSTLSKIDGLTQLYNRAYWESCLKKE 174 Query: 125 YNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 +NE SIV FDID+FK++NDNFGH VGD VI ++ L GR GGE Sbjct: 175 FNEARAAERVSSIVMFDIDHFKKVNDNFGHTVGDDVIRDAAELLRKTSRNTDICGRYGGE 234 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TII 237 EF ++ ++A LRK IENS I+ + IH +S GI E ++ P + + Sbjct: 235 EFTVILPYTNAEQAFYFTERLRKRIENSTIS-TENEEIHYRVSLGICELSNEHPDHLSWL 293 Query: 238 YRADQALYVAKKSGRNRVVCF 258 AD+ALY +K++GRN+ F Sbjct: 294 EAADKALYYSKENGRNQSNVF 314 >gi|239905574|ref|YP_002952313.1| putative signaling protein [Desulfovibrio magneticus RS-1] gi|239795438|dbj|BAH74427.1| putative signaling protein [Desulfovibrio magneticus RS-1] Length = 629 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 10/186 (5%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGL------LNHSAFISSLGS-YNEKLSIVFFDI 136 + + + E I R+ +++ D L+GL L HS+ + + + LSI FDI Sbjct: 433 FAAARDITERKIMEERLKEMATTDSLTGLNNRQHFLEHSSILFEMAKRHKANLSIALFDI 492 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FKQ+ND +GH GD V+ LS + F + +GR+GGEEFA + ++EA + + Sbjct: 493 DHFKQVNDTWGHEAGDLVLRELSKLALNCFRSSDIIGRIGGEEFAVIMPETDKEEAILAS 552 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254 RKI+E+++ + + IT+S GIA+ I+ + +D ALY AK +GRN Sbjct: 553 ERFRKIVESTRFEYEND-LLSITVSIGIAQFNPNTNTTINDLTKISDDALYTAKANGRNM 611 Query: 255 VVCFSD 260 V C +D Sbjct: 612 VFCAND 617 >gi|110632742|ref|YP_672950.1| diguanylate cyclase [Mesorhizobium sp. BNC1] gi|110283726|gb|ABG61785.1| diguanylate cyclase [Chelativorans sp. BNC1] Length = 251 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 90/171 (52%), Gaps = 3/171 (1%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGH 148 EL + ++++ +R+D ++GLLN SAFI+S+ + ++ D D FKQIND FGH Sbjct: 77 ELAAMHQKLAERARLDDMTGLLNRSAFIASVEETRVSEGRGCLILIDADRFKQINDTFGH 136 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD + ++ + G +GRLGGEEF A S EA LA ++R +E + Sbjct: 137 LAGDLALIEIAGAIRGASGQMHAIGRLGGEEFGVFAFSCSLIEARKLAEEIRAAVEKTHF 196 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I +T+S G+ S I+ ADQ LY AK+ GRN VV S Sbjct: 197 APDGTEPIPLTVSIGVVAARTGAGFSEIMGEADQRLYQAKRRGRNTVVAGS 247 >gi|194365005|ref|YP_002027615.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] gi|194347809|gb|ACF50932.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] Length = 554 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 18/206 (8%) Query: 61 LEYILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 LEY VE L L S+T L++ Y L L + + QL+ D L+GL N A + Sbjct: 344 LEY-RVEALQL---SVTWLLMMAAYAMNQRLGRLRQQRDELRQLAETDGLTGLPNRRAGL 399 Query: 120 SSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 L + L I F DID FK IND GH VGD+V+ ++ L + V Sbjct: 400 QQLARHLAQVDRERGPLVIGFLDIDLFKDINDRHGHAVGDQVLVAVARALRTAVRSQDEV 459 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQ-INISSGPSIHITISAGIAE-RCH 229 R+GGEEF G + A+ + LR +IIE Q + + P + +T S G+A+ R Sbjct: 460 VRMGGEEFLLLMPGMPRETASARLDRLRQRIIEAGQALQV---PGLEVTASIGLAQWRPG 516 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 ++ ++ ++ RAD A+YVAK++GRNRV Sbjct: 517 EDDLAALLRRADHAMYVAKRAGRNRV 542 >gi|59713979|ref|YP_206754.1| GGDEF domain-containing protein [Vibrio fischeri ES114] gi|59482227|gb|AAW87866.1| GGDEF domain protein [Vibrio fischeri ES114] Length = 320 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/201 (37%), Positives = 110/201 (54%), Gaps = 16/201 (7%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124 V ++SL+I +T I+ + L L S +++S LS+ID L+ L N + + S L Sbjct: 122 VSHISLIIHDVT------EIAKNTL-HLENSNHQLSTLSKIDGLTQLYNRAYWESCLKKE 174 Query: 125 YNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 +NE SIV FDID+FK++NDNFGH VGD VI ++ L GR GGE Sbjct: 175 FNEARAAERVSSIVMFDIDHFKKVNDNFGHTVGDDVIRDAAELLRKTSRNTDICGRYGGE 234 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TII 237 EF ++ ++A LRK IENS I+ + IH +S GI E ++ P + + Sbjct: 235 EFTVILPYTNAEQAFYFTERLRKRIENSTIS-TENEEIHYRVSLGICELSNEHPDHLSWL 293 Query: 238 YRADQALYVAKKSGRNRVVCF 258 AD+ALY +K++GRN+ F Sbjct: 294 EAADKALYYSKENGRNQSNVF 314 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] gi|151282230|gb|ABR90640.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 94/174 (54%), Gaps = 9/174 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + + +LSR+D L+G N F + + ++ LS++ FDID FKQIND Sbjct: 433 ELRKARDEAERLSRVDALTGAFNRRYFNEVAALEFAKVRRLHQPLSVISFDIDLFKQIND 492 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH GD+VI + FV R+GGEEFA GS+ ++AA A LR+++ Sbjct: 493 NYGHAAGDEVIKAAARVSRNAVREIDFVARIGGEEFAILLPGSTIEQAAATAERLRELVI 552 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 Q++ G + T S G+A+ + + ++ RAD+ +Y AK GRNRV Sbjct: 553 AEQVSY-QGKLLAFTASFGVAQLKDSDQSFEALLQRADEMMYRAKNLGRNRVAA 605 >gi|317050226|ref|YP_004111342.1| diguanylate cyclase [Desulfurispirillum indicum S5] gi|316945310|gb|ADU64786.1| diguanylate cyclase [Desulfurispirillum indicum S5] Length = 301 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 97/188 (51%), Gaps = 12/188 (6%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130 I++L L+E I + QLS +D L+ + N +L Y LS Sbjct: 119 IAVLKDVTGHRELEETIIKLYEVKQLSMLDPLTQVYNRYKLSETLKKETTRAQRYRSHLS 178 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 +F D+D+FK IND GH GD+V+ +++ + + GR GGEEF +S Sbjct: 179 FIFLDVDHFKAINDEHGHNRGDEVLRQIAELIKNMLRQSDTFGRWGGEEFIIVLPHASLD 238 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +A++ A LR +E + ++I S IT S G+ E EP +I RAD+ALY+AK++ Sbjct: 239 DASMKAEQLRLAVEQAPLSIGS-----ITCSFGVTEYQLGEPHDQLIQRADRALYIAKQT 293 Query: 251 GRNRVVCF 258 GRNRVV Sbjct: 294 GRNRVVAL 301 >gi|319645363|ref|ZP_07999596.1| YhcK protein [Bacillus sp. BT1B_CT2] gi|317393172|gb|EFV73966.1| YhcK protein [Bacillus sp. BT1B_CT2] Length = 362 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 94/182 (51%), Gaps = 13/182 (7%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLN-------HSAFISSLGSYNEKLSIVFFDI 136 YI + K F+ + + S ID L+GL N +A IS+ NEKLS++ DI Sbjct: 180 YIVSYLRKSHFL-LKKYEEESSIDYLTGLNNVRQFDAIWNAHISNAKEKNEKLSLLLIDI 238 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 DYFK IND +GH GD ++ L L + V R GGEEF+ S +AA +A Sbjct: 239 DYFKTINDTYGHSNGDAILKELGTILKKSARSEDIVSRNGGEEFSVILPNCSHSQAAEIA 298 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253 +RK +E IS IHIT+S G+A E H +I +ADQ LY AK GRN Sbjct: 299 ERVRKEVETHTFFISHSKKIHITVSIGVAAFPEVIH--STEELIEKADQCLYRAKHLGRN 356 Query: 254 RV 255 RV Sbjct: 357 RV 358 >gi|91776974|ref|YP_546730.1| diguanylate cyclase [Methylobacillus flagellatus KT] gi|91710961|gb|ABE50889.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT] Length = 599 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 10/184 (5%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138 S +++EL +++++ D L+G LN +L + +LS+ DID+ Sbjct: 416 SERLVQELTAKLEHVNEVAHEDFLTGTLNRRGMEQALEREFDRARRHATRLSLAMMDIDH 475 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAN 197 FK++ND GH GDK + LS L + + R GGEEF + E EA I+ Sbjct: 476 FKRLNDRLGHATGDKALVHLSKVLKASLRSTDVLARYGGEEFIIILPDTGEAEAVEIMKR 535 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 R + N + + + IT SAG+AER EP +++ RAD+ALY AK++GRN V Sbjct: 536 AQRDLTRN--FFMHNNERVLITFSAGVAEREQDEPPESLVPRADRALYHAKQAGRNMVAG 593 Query: 258 FSDI 261 +DI Sbjct: 594 AADI 597 >gi|148254453|ref|YP_001239038.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] gi|146406626|gb|ABQ35132.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] Length = 382 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 15/198 (7%) Query: 73 IISITISLLLGYISGSILKELFI-------SYNRISQLSRIDCLSGLLNHSAFISSL--- 122 +++I + LG S S+ + L+ +Y RI +L+ +D L+G LN + + L Sbjct: 184 VLTIAGCMFLGIFSSSLRESLYQRGLKLKEAYRRIEELAELDELTGALNRRSIMHVLEEE 243 Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 + S++ D+D+FK+IND GHP GD V+ + + + GR GGE Sbjct: 244 LTRSRQTGKPCSVMLIDLDWFKRINDEHGHPTGDDVLRTFAITMFANIRSSDRFGRYGGE 303 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EF G+ A LA LR+II + + S + +T SAG+A E +++ Sbjct: 304 EFLLVLPGAPLDPACRLAERLRQIIADLDWSAFSA-GLQVTFSAGVATSRGDETTESLLS 362 Query: 239 RADQALYVAKKSGRNRVV 256 RAD+ALY +K GRNRV Sbjct: 363 RADRALYASKAQGRNRVT 380 >gi|330949860|gb|EGH50120.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7] Length = 358 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 116/220 (52%), Gaps = 12/220 (5%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 L P L + + + + + + + +G++S + +L+ N + ++SR D L+GLL Sbjct: 134 ALNPVINLHGNMAQIYACLPVLVIYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 193 Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 NH A + S+ G+Y E + I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 194 NHGAWKDLLDLKYASNQGAYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALIEN 252 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 +GR GG+EF +S +A + LR I+ + + +++S GIA Sbjct: 253 LRDSDLIGRCGGDEFCVILPDTSLFQAKEILERLRLAIDEMTYTLHC--DLKVSLSIGIA 310 Query: 226 ERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + + S+ ++ AD+ALY+AK +GRNRVV D ++ Sbjct: 311 AYSPEMQDASSWLHEADKALYLAKSTGRNRVVSPQDAPSD 350 >gi|326795877|ref|YP_004313697.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326546641|gb|ADZ91861.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 480 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 8/163 (4%) Query: 98 NRISQLSRIDCLSGLLNHSA----FISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPV 150 N++ +++R D L+G +N F ++GS N+K LS+V DID+FK++NDNFGH Sbjct: 314 NKLERMARYDHLTGAVNRQTLDVLFQKAIGSSNKKQEALSLVLIDIDHFKKVNDNFGHQA 373 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDKVI+ ++ + + + R GGEEF + + +A L L IE+++ ++ Sbjct: 374 GDKVISGVARIMKNLLHKEDIICRWGGEEFLFILSNTDKSKATSLIKTLLNRIEDTKFDV 433 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ ITISAG+ + E + I RAD LY AKK GRN Sbjct: 434 GE-STVSITISAGLTQLNTDESLPQAIARADARLYQAKKEGRN 475 >gi|170289046|ref|YP_001739284.1| TPR repeat-containing diguanylate cyclase and serine/threonine protein kinase [Thermotoga sp. RQ2] gi|170176549|gb|ACB09601.1| diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Thermotoga sp. RQ2] Length = 1203 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 86/157 (54%), Gaps = 12/157 (7%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L+ F+ L Y LSI+ D D FK+IND FGH GDK + +L Sbjct: 1042 DPLTGVLSRWYFMERLEEEAYKSSRYKSPLSIIMCDADDFKKINDQFGHVAGDKTLGWLG 1101 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ V VGR GGEEF A G+S +EA I+A LRK + N + HIT Sbjct: 1102 RKMKSVLRKSDLVGRYGGEEFIIALPGTSLEEAKIVAEKLRKAVMEDPEN-----TYHIT 1156 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+AE + E I RAD+ALY+AK G+N VV Sbjct: 1157 LSFGVAEYKNGEDPFETIKRADEALYLAKTLGKNSVV 1193 >gi|318041790|ref|ZP_07973746.1| diguanylate cyclase [Synechococcus sp. CB0101] Length = 394 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 16/196 (8%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS------L 122 L LV + +T L+ + +L EL L++ D LSG+LN AF+ + L Sbjct: 192 LGLVPLFLTTGALVLVVRRQLLPELI-------SLAQTDSLSGVLNRGAFLEAADERLEL 244 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 ++ + + DID+FK IND +GH GD+VI ++D L VGRLGG+EFA Sbjct: 245 PGLDQPMVVALIDIDHFKTINDTYGHAAGDEVIRRMADFLNGAVRRGDLVGRLGGDEFAL 304 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRA 240 ++ Q +L LR+ + + + ++ G +T+S G+ E+ ++ +S ++ A Sbjct: 305 LVAAAAPQAHDLLER-LRQRVASQRWTLADGSEPQLTLSIGMVEKGSEGRQHLSELLQAA 363 Query: 241 DQALYVAKKSGRNRVV 256 D ALYVAK GRN+V+ Sbjct: 364 DAALYVAKDQGRNQVM 379 >gi|261253052|ref|ZP_05945625.1| GGDEF family protein [Vibrio orientalis CIP 102891] gi|260936443|gb|EEX92432.1| GGDEF family protein [Vibrio orientalis CIP 102891] Length = 345 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 8/205 (3%) Query: 68 NLSLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126 N + + ++ +++ L ++S IL+ + S + QL+ D L+G+ N A I + Y Sbjct: 142 NFAELSVNFSLAYLCIWLSSHILEVKRKTSVTSLGQLASRDALTGVYNRHALIHNFERYR 201 Query: 127 EK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + LS++ D+DYFK +ND +GH GD+V+ + L+ F V R+GGEEF Sbjct: 202 NESAKVPLSLLILDLDYFKNVNDKYGHDAGDRVLV-QTAALIDSFCDEHLVYRIGGEEFC 260 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 A + + A A +R IE+ N P I +T S GI + H + + ++ AD Sbjct: 261 IALHNTEVKSAMYKAEQIRTGIEHYTFNDKENP-IRLTASIGIYQCDHYKCLEDVLREAD 319 Query: 242 QALYVAKKSGRNRVVCFSDIENNTC 266 + LY AK +GRN+V+ + E +TC Sbjct: 320 KELYKAKSNGRNQVMVCNQTECSTC 344 >gi|157963612|ref|YP_001503646.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157848612|gb|ABV89111.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 621 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 19/208 (9%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLG 123 E LS ++ T+ L + L+EL + ++++ +R+D L+G+ N ++F I + G Sbjct: 422 EKLSQMVQERTLELEIA------LRELNEANQKLTEQTRVDSLTGVKNRASFDKRIMAEG 475 Query: 124 SYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178 + + LSI+ DID FK IND++GH GD+ + ++D+L P V R GGE Sbjct: 476 RISRRQQTPLSILMLDIDRFKLINDSYGHLAGDQALRVIADKLKETLKRPTDLVSRFGGE 535 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAER--CHKEPIST 235 EFA + + A +A LRK+I ++ IS G SI +T+S G++ +E + Sbjct: 536 EFAIILPNTDKIGAQQVAETLRKVI--CELPISWGEDSIPLTVSIGVSSEIITSEEHTTL 593 Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIEN 263 ++ +AD+ALY AK GRNRV +S ++ Sbjct: 594 LLEQADKALYQAKNDGRNRVRLYSPDQD 621 >gi|330942360|gb|EGH44981.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 358 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 111/216 (51%), Gaps = 12/216 (5%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 L P L + + + + + +T + +G++S + +L+ N + ++SR D L+GLL Sbjct: 134 ALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 193 Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 NH A + SS +Y E + I DID+FK IND +GH +GD V+ +S+ L Sbjct: 194 NHGAWKDLLDLEYASSQNAYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALTEN 252 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 +GR GG+EF + +A + LR I+ + + +++S GIA Sbjct: 253 LRDSDLIGRCGGDEFCVILPDTCLLQAKEILERLRLAIDEMTYTLHC--DLKVSLSIGIA 310 Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + P S+ ++ AD+ALY+AK +GRNRV D Sbjct: 311 AYSPEMPDASSWLHEADKALYLAKSTGRNRVASPQD 346 >gi|262404021|ref|ZP_06080576.1| GGDEF family protein [Vibrio sp. RC586] gi|262349053|gb|EEY98191.1| GGDEF family protein [Vibrio sp. RC586] Length = 953 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 68/172 (39%), Positives = 94/172 (54%), Gaps = 9/172 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDN 145 ++L ++ +LS+ D L+GL N AF SL +L I DID+FKQIND Sbjct: 773 QKLRFQADKFERLSKEDELTGLANRRAFDMSLKQAFTQLPDLPLCIAVLDIDHFKQINDR 832 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 + H +GD+VI +S QL+ G V R GGEEF G +QEA LR +IE Sbjct: 833 YSHIIGDQVIVSVSQQLLKYVGDKTKVARWGGEEFTVLYFG-PQQEAWGYFEQLRHVIE- 890 Query: 206 SQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 Q++ S+ S + +T+S G A+ E T++ AD AL AK+ GRNRVV Sbjct: 891 -QVDFSTVDSGLTVTVSIGFADSQQAECYETVLKLADHALLTAKQLGRNRVV 941 >gi|289676957|ref|ZP_06497847.1| GGDEF [Pseudomonas syringae pv. syringae FF5] gi|330977848|gb|EGH77751.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 350 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 12/218 (5%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 L P L + + + + + +T + +G++S + +L+ N + ++SR D L+GLL Sbjct: 126 ALDPVVNLHGNMAQIYACLPVLVTYPIFIGWLSHQVTLKLWEHRNILRKVSRTDSLTGLL 185 Query: 114 NHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 NH A + SS +Y E + I DID+FK IND +GH +GD V+ +S+ L Sbjct: 186 NHGAWKDLLDLEYASSQNTYQECV-IALIDIDHFKVINDTYGHLMGDTVLQSISEALTEN 244 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 +GR GG+EF + +A + LR I+ + ++ +++S GIA Sbjct: 245 LRDSDLIGRCGGDEFCVILPDTCLLQAKEILERLRLAIDEMTYILHC--NLKVSLSIGIA 302 Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + P S+ ++ AD+ALY+AK +GRNRV D + Sbjct: 303 AYSPEMPDASSWLHEADKALYLAKSTGRNRVASHQDAQ 340 >gi|224372154|ref|YP_002606526.1| ggdef domain protein [Nautilia profundicola AmH] gi|223589281|gb|ACM93017.1| ggdef domain protein [Nautilia profundicola AmH] Length = 347 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 126/235 (53%), Gaps = 19/235 (8%) Query: 39 IATVIFIANIF-LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL----KEL 93 IA +I + ++F LF+I L Y ++ L + +++ +I LG++ L KE Sbjct: 117 IAIIISVYSLFALFFIKLFNLYNIDAFSFMTLIMSLVAFSI---LGFLISLQLDKYAKET 173 Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 ++ +L+ ID L+ + N AF + + L+++ DID+FK+IND + Sbjct: 174 LEQSKKLEKLALIDELTQIFNRRAFFKIAQKLLMQAKREEKTLTLIMMDIDHFKKINDTY 233 Query: 147 GHPVGDKVI-AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH GD V+ +F+S+ ++ +F R+GGEEF +SE++ + + + I N Sbjct: 234 GHKAGDIVLKSFVSEIQKIIRQNDLF-ARIGGEEFVLLLYDTSEKDVDAIVDKILNAIRN 292 Query: 206 SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I+I+ I IT+S G I + +++ I + AD+ALYVAKK+GRN+ V + Sbjct: 293 MHISINENTMIQITVSLGIYIIQSYNEDNIQQALINADKALYVAKKTGRNKAVYY 347 >gi|192361145|ref|YP_001983912.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107] gi|190687310|gb|ACE84988.1| GGDEF domain protein [Cellvibrio japonicus Ueda107] Length = 371 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 12/171 (7%) Query: 88 SILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDN 145 S + L +YNR I Q+ ++ L+NHS ++ + +++ DID+FKQINDN Sbjct: 209 STVDPLTQAYNRFGIDQI-----VTTLMNHSELQTTEAA---DFALMVMDIDHFKQINDN 260 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH +GDK++ ++ + F+GR GGEEF +S++ A LA+ +R++I Sbjct: 261 YGHDLGDKILQRIAHIIQENLHAEDFLGRWGGEEFIVIQPNTSKEFAMALADKIRQVIAT 320 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + SG ++ +T+S G+ ER E + R D+ALY AK GRNR + Sbjct: 321 TY--FESGNTVRVTLSVGVGERLIGEDFAATFKRVDEALYRAKAEGRNRCI 369 >gi|153835713|ref|ZP_01988380.1| putative sensory box/ggdef family protein [Vibrio harveyi HY01] gi|148867646|gb|EDL66934.1| putative sensory box/ggdef family protein [Vibrio harveyi HY01] Length = 329 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 13/169 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 R+ +LS D L+G+LN AF++SL ++ LS + DID+FK+IND GH Sbjct: 141 KRLKELSETDELTGVLNRRAFLTSLDKAMSSHVQPSQTLSCIMIDIDHFKEINDQVGHFS 200 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+VI ++ F+GRLGGEEFA + +S +A +A +R+ I+N+ + Sbjct: 201 GDQVIHHVAKICQRAIRGSDFIGRLGGEEFAVILVNTSAIQAYDVAERIREAIQNAPCKV 260 Query: 211 SSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 G + T+S G+AE + E +S+ ++ AD+A+Y +K SGRN+V Sbjct: 261 -DGIEVSTTVSIGVAE--YDEQVSSTTELMVNADKAMYYSKHSGRNQVT 306 >gi|89092715|ref|ZP_01165668.1| GGDEF/HAMP domain protein [Oceanospirillum sp. MED92] gi|89083227|gb|EAR62446.1| GGDEF/HAMP domain protein [Oceanospirillum sp. MED92] Length = 580 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 9/168 (5%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+ +LN AF I YN +L+I+ DID+FKQIND +GH GDKV Sbjct: 411 KLASTDPLTRVLNRRAFDQRSREEIERSHRYNRELAIILLDIDHFKQINDQYGHQFGDKV 470 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ + + R GGEEF + E A ++A +RK I +I Sbjct: 471 LIDVANLIGPSLRAADCLCRHGGEEFIILLPETDEATALLIAERVRKSIAQHKIT-DRHD 529 Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 S+ IT S G+A R + I +YRADQA+Y AK SGRN+VV F+ + Sbjct: 530 SLSITASFGVAVWRREEGDIQPAVYRADQAMYKAKNSGRNKVVAFTRV 577 >gi|88706305|ref|ZP_01104011.1| conserved hypothetical protein, membrane [Congregibacter litoralis KT71] gi|88699456|gb|EAQ96569.1| conserved hypothetical protein, membrane [Congregibacter litoralis KT71] Length = 556 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 11/178 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 +EL + L+ +D L+ + N A ++L + Y LS++ DID FKQ+N Sbjct: 370 RELKTKNAELDHLASVDKLTDIFNRRALDAALSTELARAKRYQRSLSLLLMDIDLFKQVN 429 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D++GH GDKV+ L+ ++ +GR GGEEF +S ++A +A +R I Sbjct: 430 DHYGHLTGDKVLVTLTKEIQQKLRGSDILGRWGGEEFLIVCPETSLEQARNIAEKIRSSI 489 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 E + P+ ITIS GI+ + ++ RAD+ALY+AK GRN V +SD+ Sbjct: 490 EQTDFR----PASKITISIGISVLGDNDTAEALVARADRALYMAKSQGRNCVRVYSDL 543 >gi|303245624|ref|ZP_07331907.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio fructosovorans JJ] gi|302492887|gb|EFL52752.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio fructosovorans JJ] Length = 418 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 93/172 (54%), Gaps = 9/172 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144 E+ ++ + S D L+ L N F + L E +++ DID+FK++ND Sbjct: 246 EMLEYIQKLRETSIRDPLTSLYNRRHFFETSKDCYKRLARGEEPMTLAMLDIDHFKRVND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH VGD+V+ ++ L F V RLGGEEF A+G Q+A NDLR IE Sbjct: 306 TYGHAVGDEVLKHVAHGLSNRFRGRDIVARLGGEEFCVLAMGLEGQQALAAFNDLRNSIE 365 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+ + S+ +TIS G+ ++ K I ++ AD ALY AK++GRNRVV Sbjct: 366 RSKAK-AGNISVGVTISIGLCDKP-KGSIENMLADADAALYKAKRTGRNRVV 415 >gi|152983535|ref|YP_001347829.1| hypothetical protein PSPA7_2463 [Pseudomonas aeruginosa PA7] gi|150958693|gb|ABR80718.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 341 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 96/185 (51%), Gaps = 12/185 (6%) Query: 83 GYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSI 131 GY+ L E L R + S +D L+ L N + F + L NE+ I Sbjct: 156 GYLQLRSLTEHTRFLRQEIGREQRRSLLDPLTQLWNRAGFDALHRHELELAQANEQNAGI 215 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 ++ DID+FK+IND +GH GD V+ + +L + R GGEEF A E Sbjct: 216 IYSDIDHFKRINDTYGHKAGDTVLREAASRLRAALRPEDLLARFGGEEFVALVRVRDHLE 275 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 +++AN +R+++E + I+ + P + +TISAG H E + + RAD ALY AK+ G Sbjct: 276 LSVVANRIRELMEATPIDCAGTP-VTMTISAGCTLARHAEELERSLARADAALYEAKRGG 334 Query: 252 RNRVV 256 RNRVV Sbjct: 335 RNRVV 339 >gi|52080677|ref|YP_079468.1| GGDEF-domain-containing protein [Bacillus licheniformis ATCC 14580] gi|52786050|ref|YP_091879.1| YhcK [Bacillus licheniformis ATCC 14580] gi|52003888|gb|AAU23830.1| GGDEF-domain containing protein [Bacillus licheniformis ATCC 14580] gi|52348552|gb|AAU41186.1| YhcK [Bacillus licheniformis ATCC 14580] Length = 362 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 94/182 (51%), Gaps = 13/182 (7%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLN-------HSAFISSLGSYNEKLSIVFFDI 136 YI + K F+ + + S ID L+GL N +A IS+ NEKLS++ DI Sbjct: 180 YIVSYLRKSHFL-LKKYEEESSIDYLTGLNNVRQFDAIWNAHISNAKEKNEKLSLLLIDI 238 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 DYFK IND +GH GD ++ L L + V R GGEEF+ S +AA +A Sbjct: 239 DYFKTINDTYGHSNGDAILKELGTILKKSARSEDIVSRNGGEEFSVILPNCSHSQAAEIA 298 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253 +RK +E IS IHIT+S G+A E H +I +ADQ LY AK GRN Sbjct: 299 ERVRKEVETHTFFISHSKKIHITVSIGVAAFPEVIH--STGELIEKADQCLYRAKHLGRN 356 Query: 254 RV 255 RV Sbjct: 357 RV 358 >gi|16760753|ref|NP_456370.1| hypothetical protein STY2005 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141489|ref|NP_804831.1| hypothetical protein t1011 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163492|ref|ZP_03349202.1| hypothetical protein Salmoneentericaenterica_27115 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424175|ref|ZP_03357040.1| hypothetical protein SentesTyphi_00320 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213615719|ref|ZP_03371545.1| hypothetical protein SentesTyp_15079 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648151|ref|ZP_03378204.1| hypothetical protein SentesTy_13209 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25512044|pir||AC0731 conserved hypothetical protein STY2005 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503050|emb|CAD05549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137116|gb|AAO68680.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 376 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 30/267 (11%) Query: 19 LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67 + S+ + F++++ + F+ ++ ++ + + Y L P + L +L Sbjct: 110 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVQLN 168 Query: 68 ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114 N+ +++ +T++ +L Y I E ++ Y R+ ++ D L+G N Sbjct: 169 QYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 228 Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170 + S LG E +++ D+DYFK NDN+GH GD +A ++ + TP Sbjct: 229 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPAD 288 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229 V R GGEEF SS EAA++A ++ + E + +++S S +T+S GI Sbjct: 289 LVARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTA 348 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ II RAD+ALY AK+ GRNR V Sbjct: 349 GDTVTGIIARADEALYRAKQQGRNRWV 375 >gi|114320653|ref|YP_742336.1| putative GAF sensor protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227047|gb|ABI56846.1| putative GAF sensor protein [Alkalilimnicola ehrlichii MLHE-1] Length = 689 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 12/198 (6%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLG- 123 +E +++ ++ +++LL +L NR + + + D L+G+ N + Sbjct: 492 IEREAVLDLADEVAVLLSRKEIDLLNAQLTEANRRLKRQATTDSLTGVWNRYRMQEQIEL 551 Query: 124 ------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 Y S++ FDID+FK +ND +GH GD+V+ L+ +V F+GR GG Sbjct: 552 ERGAHERYGTPCSLLLFDIDHFKAVNDQYGHEAGDQVLVALARAVVGELRATDFLGRWGG 611 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 EEF A S+ +EA LA LR+ I + GP +TIS G+A + + +I Sbjct: 612 EEFIVLATNSAPEEAWTLAERLRQCIAGLRFP-GVGP---VTISVGVASLSRGDTVDRLI 667 Query: 238 YRADQALYVAKKSGRNRV 255 RAD+A+Y AK+ GRNRV Sbjct: 668 DRADRAMYRAKQRGRNRV 685 >gi|254491577|ref|ZP_05104756.1| GGDEF domain protein [Methylophaga thiooxidans DMS010] gi|224463055|gb|EEF79325.1| GGDEF domain protein [Methylophaga thiooxydans DMS010] Length = 462 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/175 (38%), Positives = 91/175 (52%), Gaps = 10/175 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH----SAFISSL---GSYNEKLSIVFFDIDYFKQIN 143 +EL ++ QLS+ D L+G+ N AF L Y +IV DID FKQIN Sbjct: 291 RELQRVNKKLEQLSQRDHLTGIHNRYYLDQAFQQELTRYKRYQHGFTIVMLDIDLFKQIN 350 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D++GH VGD VI ++ L V R GGEEF +S A LA LR++I Sbjct: 351 DSYGHVVGDDVIKQIAMLLREHVRDQDVVARWGGEEFLILNPETSLDGARTLAEHLRRLI 410 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + I +T+S G+ + E I T+I RAD ALY AK+SGR++ V F Sbjct: 411 RRTPFTVD---KIDVTVSFGVTDYRAGEDIETMIQRADSALYQAKQSGRDKTVVF 462 >gi|316934369|ref|YP_004109351.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315602083|gb|ADU44618.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 355 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 11/181 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQIND 144 L +S I S D L+GL N H A S+ S+ + LS++ DID+FK ND Sbjct: 167 LQLSLEAIRNESLTDPLTGLGNRKHFDRTVHDALRSAAASH-QPLSLLMMDIDHFKSFND 225 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ + L F R GGEEFA + ++A I+A+++R+ + Sbjct: 226 TYGHLTGDQVLRLVGLTLKQSIKGQDFTARYGGEEFAVVLPNTPLRQAIIVADNIRRQVM 285 Query: 205 NSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + ++ S I +T+SAG++ + + ++I RAD LY AK++GRNRVVC +D E Sbjct: 286 SKELKKKSTGEILGRVTLSAGVSTLKPNDDVESLIGRADACLYAAKRNGRNRVVCETDPE 345 Query: 263 N 263 + Sbjct: 346 H 346 >gi|227329545|ref|ZP_03833569.1| hypothetical protein PcarcW_20268 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 490 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/165 (41%), Positives = 91/165 (55%), Gaps = 8/165 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVG 151 R+ Q++ D L+GL+N AF LG+ N + LSI+ DID+FK+IND +GH VG Sbjct: 324 RLEQMATTDKLTGLMNRQAFDYLFRRLGAKNALQHKSLSILLIDIDHFKRINDQYGHNVG 383 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ +S L + R GGEEF A A LR IE +QI Sbjct: 384 DFVLQGVSALLSSNTRSSDQSCRWGGEEFVILLDDCDINAAQQRAEALRHSIEIAQIPHR 443 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G +I +T+S G+AE E +S +I RAD ALY AK+ GRNRVV Sbjct: 444 EG-TIQVTVSCGVAEYRAGETLSMLINRADIALYQAKQQGRNRVV 487 >gi|218886572|ref|YP_002435893.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757526|gb|ACL08425.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 730 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 8/167 (4%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148 + R+ QL+ D L+GL N F+ +L Y L+++ D+D FK++ND +GH Sbjct: 542 AQERLRQLATTDGLTGLANRRRFLEALEHEVQRHRRYGTPLALISIDVDRFKRVNDTWGH 601 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+V+ L+ VGR+GGEEFA ++ +EA +A LR +E + + Sbjct: 602 AVGDEVLRALAGICRAEVRDVDTVGRIGGEEFAVLLPDTAPEEAMAVAERLRAGVEAAPL 661 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++GP + +T+S G++ + T++ AD+ALY AK GRNRV Sbjct: 662 LTTAGP-LTVTLSLGVSASPPCDGADTLLREADRALYRAKAGGRNRV 707 >gi|220925196|ref|YP_002500498.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium nodulans ORS 2060] gi|219949803|gb|ACL60195.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium nodulans ORS 2060] Length = 300 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/167 (39%), Positives = 93/167 (55%), Gaps = 10/167 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVI 155 +L+ D LSGLLN AF+ + E+ L +V DID+FK+IND GH VGD I Sbjct: 131 RLAETDMLSGLLNRRAFLQRVTDAAERAGDHGRLGLVLADIDHFKRINDENGHDVGDLAI 190 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L + VGRLGGEEF A G + +EA AN +R + + + GP Sbjct: 191 QGVAQALCEI--PDGIVGRLGGEEFGIALPGRTLEEAEAAANRIRLRCTHLRFKGARGP- 247 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDI 261 + +T S G++ E ++++ RAD ALY AK GRNRVV F+D+ Sbjct: 248 VQLTCSFGVSAWSEGETVASLHKRADIALYEAKSIGRNRVVSAFADL 294 >gi|302879651|ref|YP_003848215.1| diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302582440|gb|ADL56451.1| diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 446 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 12/182 (6%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK----LSIVFFDIDY 138 G +++ L + N++ Q S D L+G+ N + A + +G Y + S++ DID+ Sbjct: 269 GELVQVLETNNNKLRQESLTDALTGVGNRRMINQAIEAEIGRYYRQERSAFSLLLLDIDH 328 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+IND GHP GD+V+ L + + R GGEEFA +S A LAN Sbjct: 329 FKKINDTHGHPFGDEVLKSLCLTVKKRLRATDTLARWGGEEFAVLLPAASLSAATNLANH 388 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +R+ IEN++I S +T+S G AE E + ++ R D+ALY AK++GRN V+ Sbjct: 389 IREDIENNKIPAESS----VTVSIGTAEYRRGESLEILLQRVDKALYQAKQNGRNTVIPA 444 Query: 259 SD 260 D Sbjct: 445 DD 446 >gi|323488193|ref|ZP_08093444.1| response regulator diguanylate cyclase/phosphodiesterase [Planococcus donghaensis MPA1U2] gi|323398197|gb|EGA90992.1| response regulator diguanylate cyclase/phosphodiesterase [Planococcus donghaensis MPA1U2] Length = 536 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 101/191 (52%), Gaps = 17/191 (8%) Query: 84 YISGSILKELFISY--NRIS------QLSRIDCLSGLLNHSAF---ISSLGSYNEK---- 128 ++S + LF+ Y NR+ Q + D L+G N F +S + + +EK Sbjct: 209 FLSKPLNMALFVPYVLNRLRLQKMILQETLYDELTGAGNRKYFNDVLSQMTTLSEKSKKT 268 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 ++V FD+D+FK++NDN+GHP+GD+V+ S L+ + R GGEEFA ++ Sbjct: 269 FTLVLFDLDHFKKVNDNYGHPIGDEVLQAFSQLLLKKKRDSDYFFRYGGEEFALILPDTA 328 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 + A R N S S H+T SAGI+E K+ T++ +ADQALY AK Sbjct: 329 AETAISFVEQTRLDFANIAFTDQSNNSFHVTFSAGISEYRQKQ--DTLVTKADQALYQAK 386 Query: 249 KSGRNRVVCFS 259 K+GRN+ + F Sbjct: 387 KNGRNQTMMFE 397 >gi|229515726|ref|ZP_04405185.1| GGDEF family protein [Vibrio cholerae TMA 21] gi|229347495|gb|EEO12455.1| GGDEF family protein [Vibrio cholerae TMA 21] Length = 691 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 509 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIAVLDIDHFKQIN 568 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 569 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPKQAWGYFEK-LRCKI 627 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ P +++T+S G A+ E T++ AD AL AKK GRN VV Sbjct: 628 E--QVDLSAVAPGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNCVV 679 >gi|222149543|ref|YP_002550500.1| GGDEF family protein [Agrobacterium vitis S4] gi|221736525|gb|ACM37488.1| GGDEF family protein [Agrobacterium vitis S4] Length = 242 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 17/220 (7%) Query: 45 IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI--------LKELFIS 96 +A F + +GL P + + V +S+ +S LLG + ++ L I+ Sbjct: 14 VALPFCWVLGLVP--------MPIIDAVKLSVAMSWLLGSFVATFTGVFVAREIRSLAIA 65 Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + LSRID LSGLLN AF +L S+ D+D+FK IND +GH GD VI Sbjct: 66 KAKYEHLSRIDGLSGLLNRRAFSEALDQTEGNASLAIADLDWFKSINDAYGHSAGDFVIR 125 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++D L P RLGGEEF G + Q+ + +R+ I + +++ G I Sbjct: 126 AVADILCHFANDPHVTARLGGEEFGLIIQGDTIQQRFERIDMIRRSISDLRLHF-DGRLI 184 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +IS G+AE + + AD+ALY AK +GRN +V Sbjct: 185 STSISIGVAEISPERRPEVVYAAADRALYRAKANGRNCIV 224 >gi|163759001|ref|ZP_02166087.1| hypothetical protein HPDFL43_04535 [Hoeflea phototrophica DFL-43] gi|162283405|gb|EDQ33690.1| hypothetical protein HPDFL43_04535 [Hoeflea phototrophica DFL-43] Length = 257 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GL N F +LG Y N+ + +V FD+D+FKQ+ND GH VGD+V+ ++ Sbjct: 100 DSMTGLYNRRYFDEALGEYLNAFRSINKPIGMVIFDLDHFKQVNDTHGHDVGDEVLRQVA 159 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 + L + V RLGGEEFA + S+++ LA+ +R + SQ+ + SG ++ + Sbjct: 160 ECLHMFTRYHDVVARLGGEEFAILSPNISDRQLRSLADRIRLAV--SQLTVESGNVALRV 217 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 TISAGIA E + RAD+ LY AK+ GRNRV Sbjct: 218 TISAGIAIWDGTERGDELYRRADRQLYEAKRQGRNRV 254 >gi|15644342|ref|NP_229394.1| hypothetical protein TM1594 [Thermotoga maritima MSB8] gi|4982165|gb|AAD36661.1|AE001804_5 conserved hypothetical protein, GGDEF domain [Thermotoga maritima MSB8] Length = 1206 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 86/157 (54%), Gaps = 12/157 (7%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L+ F+ L Y LSI+ D D FK+IND FGH GDK + +L Sbjct: 1045 DPLTGVLSRWYFMERLEEEAYKSSRYKSPLSIIMCDADDFKKINDQFGHVAGDKTLGWLG 1104 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ V VGR GGEEF A G+S +EA I+A LRK + N + HIT Sbjct: 1105 RKMKSVLRKSDLVGRYGGEEFIIALPGTSLEEAKIVAEKLRKAVMEDPEN-----TYHIT 1159 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+AE + E I RAD+ALY+AK G+N VV Sbjct: 1160 LSFGVAEYKNGEDPFETIKRADEALYLAKILGKNSVV 1196 >gi|320155197|ref|YP_004187576.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O] gi|319930509|gb|ADV85373.1| GGDEF domain [Vibrio vulnificus MO6-24/O] Length = 479 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L+G N +F I + +N LSI+ DID+FKQ ND++GH GD Sbjct: 307 LRNLAATDPLTGAFNRRSFMEQAEKSIRTCQRWNCPLSIMILDIDHFKQFNDSYGHAAGD 366 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L + +GRLGGEEFA G E+EA +A LR ++EN Q++ Sbjct: 367 LVLVELVKMADLSTREIDIIGRLGGEEFAVVLPGLGEKEAFEVAKRLRSVVENMQVHYEQ 426 Query: 213 GPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256 P + +TIS G+A E P+ ++ +AD+ LY AK GRN V+ Sbjct: 427 QP-LQMTISIGVATLQPSELNTPLEQLMKQADEGLYYAKAHGRNCVI 472 >gi|262192395|ref|ZP_06050548.1| GGDEF family protein [Vibrio cholerae CT 5369-93] gi|262031748|gb|EEY50333.1| GGDEF family protein [Vibrio cholerae CT 5369-93] Length = 914 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS+ D L+GL N AF S L + ++++SI DID+FKQIN Sbjct: 732 QKLRLQAEKFERLSKEDDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQIN 791 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S +L+ G V R GGEEF +G +Q LR I Sbjct: 792 DRYSHIIGDQAIVAVSQELLGYVGDKTRVARWGGEEFTILYVGDPQQAWGYF-EKLRCKI 850 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+++S+ +++T+S G A+ E T++ AD AL AKK GRNRVV Sbjct: 851 E--QVDLSAVATGLNVTVSIGFADAQQAESYETVLKLADHALLTAKKLGRNRVV 902 >gi|195953730|ref|YP_002122020.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp. Y04AAS1] gi|195933342|gb|ACG58042.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp. Y04AAS1] Length = 901 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 11/164 (6%) Query: 101 SQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +LS D L+G+ N +++ YN LS++ FDID+FK IND++GH +GDK Sbjct: 741 EELSIKDDLTGICNRRCLEDKLEEYLTLAKRYNRPLSVIMFDIDFFKHINDSYGHDIGDK 800 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ +++ ++ + R GGEEF + ++ ++A LA LRK IEN G Sbjct: 801 VLKTIANIVLSNIRATDILARYGGEEFVIISPETTLEDAKALAEKLRKEIEN--FLFEEG 858 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S IT S G+ ++ TI+ R D+ALY AK+ GRNRVV Sbjct: 859 FS--ITCSFGVTSLNQEDTKETILKRVDEALYKAKREGRNRVVA 900 >gi|327189306|gb|EGE56474.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 355 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 18/184 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK-----LSIVFFDIDYFKQ 141 + KEL Y RI+ D L+ L N AF L + +N +++ DID FK+ Sbjct: 164 QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKK 219 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GHPVGDK++A ++ + +FV R GGEEFA G++ +E A +A +R+ Sbjct: 220 INDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVAAIAERIRR 279 Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +E NS+ ++ GP IT+S GI + E + RAD ALY AK +GRN +V Sbjct: 280 TLETTPFKNSRTRVNYGP---ITVSIGICMASNAEDAGELYSRADIALYGAKNAGRNCIV 336 Query: 257 CFSD 260 + D Sbjct: 337 LYQD 340 >gi|260221572|emb|CBA30270.1| hypothetical protein Csp_C22710 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 409 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 129/252 (51%), Gaps = 30/252 (11%) Query: 31 FSIFFSIFIATVIFIANIFLF--YIGLTPFYGLEYIL---VENLSLVIISITISLLL--G 83 +I+ +A +F LF IG+T + E +L + L++ +I +S+L+ Sbjct: 162 LTIYLRPHVAAALFGVAFVLFSTLIGMTQ-HNPEMLLSNRINGLAVCVIGFCLSVLMWRK 220 Query: 84 YISGSILK--------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------- 127 + + ++ K EL + + +L+R D L+GL N + F+ S NE Sbjct: 221 FTTIAVQKHQLEKAHTELQLKQRELERLTRQDGLTGLFNRNTFVEL--STNELKRAKRQG 278 Query: 128 -KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 +I+ D+D+FK+IND +GHP GD V+ ++ +V + VGRLGGEEF Sbjct: 279 SATTILLLDLDHFKRINDTWGHPAGDVVLRHVAQTMVNSVRSTDLVGRLGGEEFIVLLPH 338 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQAL 244 ++ + + +A +R+ +E S I G I +T S G++ +E ++ AD+AL Sbjct: 339 TTAEASRKIAEKIRQRLEVSDIRW-EGKRIAVTASIGLSGTTAEESREFDSLYTEADKAL 397 Query: 245 YVAKKSGRNRVV 256 Y+AK+ GRNRV+ Sbjct: 398 YLAKQRGRNRVI 409 >gi|114569827|ref|YP_756507.1| response regulator receiver modulated diguanylate cyclase [Maricaulis maris MCS10] gi|114340289|gb|ABI65569.1| response regulator receiver modulated diguanylate cyclase [Maricaulis maris MCS10] Length = 454 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 7/161 (4%) Query: 102 QLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N + S + +S++ DID+FK IND +GH GD+V Sbjct: 286 EMAVTDALTGLHNRRYISSRLRQAMDSASNGGAPVSLLLADIDHFKHINDTYGHDAGDRV 345 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + S +L R GGEEF G+ EA I A LR I+ S ++S G Sbjct: 346 LRDFSSRLQTGLRALDLAARYGGEEFVVVMPGAGLAEARIAAERLRSSIDGSGFDLSDGT 405 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S+ +T+S GIA+ E + ++ RAD+ALY AK +GRN+V Sbjct: 406 SVPVTVSIGIAQAHRGEALDALLRRADEALYAAKTAGRNQV 446 >gi|299135054|ref|ZP_07028245.1| diguanylate cyclase [Afipia sp. 1NLS2] gi|298590031|gb|EFI50235.1| diguanylate cyclase [Afipia sp. 1NLS2] Length = 417 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 9/157 (5%) Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+GLLN F + E+ ++++ FDID+FK +ND +GHPVGD V+ Sbjct: 225 VDPLTGLLNRRGFGEATARMIEREAKAGRSITVMIFDIDHFKSVNDTYGHPVGDDVLKVF 284 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ V +GR+GGEEF AA L + EA + A +R E S + I P + Sbjct: 285 ANVAVGALRITDLLGRVGGEEF-AALLPCAMDEALLAAERVRDAFEQSGVAIDGAP-LAT 342 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+A + ++ AD ALY AK+ GRNRV Sbjct: 343 TVSIGVAGGPANTELDVLMASADTALYRAKRGGRNRV 379 >gi|152990299|ref|YP_001356021.1| hypothetical protein NIS_0550 [Nitratiruptor sp. SB155-2] gi|151422160|dbj|BAF69664.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 536 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 12/165 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D L+GL N I + Y E ++ DID+FKQIND +GH +GD Sbjct: 367 LREMALKDALTGLYNRYKMIEDIEHQIARYKRYKEPFCLIMLDIDHFKQINDTYGHDIGD 426 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + L V + R GGEEF + +E +AN L+ E I Sbjct: 427 KVLKESAKILHTVIRSSDVAARWGGEEFMILCPNTHLKEGVAIANRLKDAFEKHNFGIDR 486 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+SAG+ E R E + T++ R D+ LY AK++GRNRVV Sbjct: 487 ----RVTVSAGVVEYRNENEDMKTVLKRVDERLYQAKRAGRNRVV 527 >gi|330966211|gb|EGH66471.1| GGDEF domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 360 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 113/216 (52%), Gaps = 12/216 (5%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L P L + + + + + + + +G+++ + +L+ N + +LSR D L+GLLN Sbjct: 135 LNPVVNLNGNMTQIYACLPVLVIYPIFIGWMNHQVTLKLWEHRNILRKLSRTDSLTGLLN 194 Query: 115 HSAFISSLG---------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 H A+ L + +++ I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 195 HGAWKDLLDLEFAKSQNQNQHQECVIALIDIDHFKIINDTYGHLMGDTVLQNISEALIEN 254 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 +GR GG+EF G+S +A + +R I+ ++ S + ++S GIA Sbjct: 255 LRDSDLIGRCGGDEFCVILPGTSLLQAREILERMRLAID--ELTYSLHRDLKASLSVGIA 312 Query: 226 ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 P S+ ++ AD+ALY+AK +GRNRVV D Sbjct: 313 AYSPDLPDASSWLHEADKALYLAKSTGRNRVVSAED 348 >gi|86741218|ref|YP_481618.1| diguanylate cyclase [Frankia sp. CcI3] gi|86568080|gb|ABD11889.1| diguanylate cyclase (GGDEF domain) [Frankia sp. CcI3] Length = 587 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 91/168 (54%), Gaps = 10/168 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHP 149 + +L+ D L+GL N F G + S+ F DID+FKQ+ND GH Sbjct: 418 FEETQRLADSDPLTGLANRRHFFEQADALVRGHLHAARSLAAFMIDIDHFKQVNDGHGHA 477 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD V+A ++ ++ G VGR+GGEEF AA LG A +LA LR+ I S + Sbjct: 478 VGDAVLAEVARRVQGTLGPQDIVGRIGGEEF-AAVLGCPAATAGVLAERLRQAIGASPVA 536 Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + GP + +T+S G+A + ++ RAD ALY AK+SGR+RV Sbjct: 537 TADGP-LPVTVSVGVAMLNPDDSGLGDLLIRADVALYQAKRSGRDRVA 583 >gi|205374179|ref|ZP_03226978.1| diguanylate cyclase [Bacillus coahuilensis m4-4] Length = 340 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 13/172 (7%) Query: 99 RISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +L+ ID L+ + N + A + L + E+L++V FDID+FKQ+ND +GH G Sbjct: 163 QLKELATIDGLTKIWNRTYFMELAEALVDKLHTQQEQLAVVMFDIDHFKQVNDTYGHETG 222 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ + + + GR GGEEF G + EA +ND+R I S+ N Sbjct: 223 DYVLEHVASLVKDMLRSEDLFGRYGGEEFIICMAGVTSLEAEERSNDIRLAI--SKFN-Q 279 Query: 212 SGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + ITI++ C +KE + +I +AD ALY AK++GRNRV + D Sbjct: 280 WGIGVPITITSSFGVACGNINKEELKPLIRKADFALYHAKENGRNRVQIYQD 331 >gi|229917194|ref|YP_002885840.1| diguanylate cyclase [Exiguobacterium sp. AT1b] gi|229468623|gb|ACQ70395.1| diguanylate cyclase [Exiguobacterium sp. AT1b] Length = 358 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 9/175 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 L+ F + QL+R D L+G+ N +++L E+ +++ DID+FK++ND + Sbjct: 188 LRRHFENVQHQQQLARTDALTGIANRRLLNEAMANLTVEAEEYALILVDIDHFKRVNDTY 247 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH VGD V+ L LV VGR GGEEF ++ E + LA +R+ + Sbjct: 248 GHDVGDDVLRELGMLLVNESDERHLVGRFGGEEFLIVMPHATRNEVSRLAESIREKVSTF 307 Query: 207 QINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259 S+G ++HIT+S G CH I +++ AD+ALY AK+SGRNR + S Sbjct: 308 PFETSAG-TLHITVSLGA---CHSNDIEIDSVLKHADEALYHAKESGRNRFILAS 358 >gi|291294812|ref|YP_003506210.1| diguanylate cyclase [Meiothermus ruber DSM 1279] gi|290469771|gb|ADD27190.1| diguanylate cyclase [Meiothermus ruber DSM 1279] Length = 373 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 12/174 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y ++ Q++ D L+ L N A L YN +++ D+D+FKQIND +GH Sbjct: 193 YAQMHQMAHTDALTNLTNRRAMQQKLEGELDRARRYNRPFALLLADLDHFKQINDTYGHS 252 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ ++ +L + R GGEEF A + Q+A +LA L I S I+ Sbjct: 253 VGDQVLREVAGRLAQHLRESDSLARWGGEEFLILAPETDLQQAYLLAQRLLGAIRESPIS 312 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + +T+S G+A + I+ ++ RAD+A+Y AK GRN++V ++E+ Sbjct: 313 -----GVQVTLSLGVACYRQGDSIAALLSRADEAMYRAKAGGRNQIVLEEELED 361 >gi|83593899|ref|YP_427651.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170] gi|83576813|gb|ABC23364.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum ATCC 11170] Length = 397 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 87/165 (52%), Gaps = 12/165 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D ++GL N F+++ G +++ FD+D+FKQ+ND+ GH GD Sbjct: 218 LRRLADTDQMTGLANRRHFLTASQEAWKLAGRLGRPTALMMFDVDHFKQVNDSQGHAAGD 277 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + L+ + V GR+GGEEFA G AA++A +R+ + S+ Sbjct: 278 AALVDLARNVREVLRDIDIFGRMGGEEFAITLPGCDLVAAAVIAERVRRAVAESR---GE 334 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 GP+ ITIS G+ EP T + RAD LY AK +GRNRV C Sbjct: 335 GPA--ITISLGLTILVAGEPFDTALKRADHGLYQAKAAGRNRVCC 377 >gi|315127537|ref|YP_004069540.1| hypothetical protein PSM_A2475 [Pseudoalteromonas sp. SM9913] gi|315016051|gb|ADT69389.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 274 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 95/160 (59%), Gaps = 5/160 (3%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +NR++Q +D L+ + N F + G N +++ D+D+FK+IND++GH VGDKV+ Sbjct: 116 HNRLAQEFIMDDLTKVYNRRCFYQHVKGVVNNPYTVLIIDLDHFKRINDDYGHDVGDKVL 175 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +D++ +F R+GGEEF AA L S E + + N + I+E ++ I+ Sbjct: 176 KQFADKVNRLFKDENIFARIGGEEF-AAYLPSYELDEVL--NFSQTILETAR-TITVQNQ 231 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S GIA R + ++ RADQALY AKK+GR+R+ Sbjct: 232 RSLTVSIGIAHRTSDQTFDNVMKRADQALYRAKKAGRDRL 271 >gi|172056241|ref|YP_001812701.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15] gi|171988762|gb|ACB59684.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15] Length = 366 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 12/223 (5%) Query: 49 FLFYIGLTPFYGLEYI-LVENLSLVIISITIS-----LLLGYISGSILKELFISYNRIS- 101 F IG+ Y L I L+ N I I+++ L+ G+++ +L EL + I Sbjct: 136 FELMIGIGIVYSLPGIYLLTNSWTTFIEISLAYIFFNLIAGFVTYHLLTELRRHFENIQY 195 Query: 102 --QLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +L+ D L+GL N SL GS E S++ DID+FK +ND +GH GD V+ Sbjct: 196 QQKLAMTDALTGLANRRRLDDSLSLVGSAEEGYSLILIDIDFFKHVNDTYGHDAGDDVLR 255 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L L + VGR GGEEF +S +A +A R + + ++ P + Sbjct: 256 QLGTTLASLARPDDLVGRYGGEEFLIILPNTSLADAKSIAELARTTVARNLFPTTAVPDL 315 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ITIS GIA + +AD+ALY +K SGRNR ++ Sbjct: 316 QITISLGIAHSSSSHTSLEALQQADKALYHSKDSGRNRSTTYT 358 >gi|157373761|ref|YP_001472361.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157316135|gb|ABV35233.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 323 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 17/219 (7%) Query: 57 PFYGLEYILVENLSLVIIS------ITISLLLGYISGSILKELFI--SYNRISQLSRIDC 108 P G + +N++L+ +S ISL++ ++ + +L + + R+ LS+ D Sbjct: 101 PITGRADFMYQNVTLLPLSSLTGQITHISLIVYDVTDVAINKLQLKAANERLEHLSQTDG 160 Query: 109 LSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L N + + Y +K S+V FDID+FK+INDN+GH GDKVI +S Sbjct: 161 LTQLHNRRHWQMCMQKEFDRHSRYGDKTSLVMFDIDHFKKINDNYGHLAGDKVIQHISHL 220 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L GR GGEEF+ + + A A+ LRK IE S++ + +I +T+S Sbjct: 221 LKQSLRETDCAGRYGGEEFSVVLAHTCAKGALNFADRLRKKIEKSEL-VFEKETIKVTVS 279 Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 GI++ + E + AD+ALY AK+SGRN V + Sbjct: 280 MGISDINDQLENSGQWLAYADRALYQAKESGRNNCVIYD 318 >gi|330959761|gb|EGH60021.1| two-component response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 517 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 91/176 (51%), Gaps = 12/176 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI----VFFDIDYFKQINDN 145 LK L R D L+GLLNH ++S + S+ V DID+FKQ+ND Sbjct: 340 LKALISRSKAFDSRMRRDPLTGLLNHGQLMASASRVSASGSVPNTMVMIDIDHFKQVNDT 399 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGHPVGDKV+ L++ L + F+GR+GGEEFA +G+ +A + + +R++ N Sbjct: 400 FGHPVGDKVLVGLAEILSDNLRSTDFIGRMGGEEFAVLMVGAPISDARNVIDRIRELFSN 459 Query: 206 SQINI------SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 Q SG T SAG+A IS + AD ALY AK GRNRV Sbjct: 460 LQFETGLQDQGDSGKWFACTFSAGVALLDGSAAIS--MKAADHALYKAKHGGRNRV 513 >gi|261316078|ref|ZP_05955275.1| diguanylate cyclase [Brucella pinnipedialis M163/99/10] gi|261305104|gb|EEY08601.1| diguanylate cyclase [Brucella pinnipedialis M163/99/10] Length = 240 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148 +L S+ + +RID ++GLLN A ++ S E +++ D D+FK IND+FGH Sbjct: 70 QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 129 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ Sbjct: 130 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 189 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 190 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237 >gi|254447598|ref|ZP_05061064.1| signaling protein with membrane-bound sensor domain and ggdef domain [gamma proteobacterium HTCC5015] gi|198262941|gb|EDY87220.1| signaling protein with membrane-bound sensor domain and ggdef domain [gamma proteobacterium HTCC5015] Length = 782 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 9/187 (4%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130 +SLL + G ++ + + QLS +D L+ + N + + L ++ Sbjct: 594 LSLLAFVLMGYVVSRWSLREAEVRQLSLVDPLTQIHNRLSIMQVLDQALSQHRREGSPIA 653 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 +V DID+FK INDN+GHPVGD+++ + L +GR GGEEF G+ Sbjct: 654 VVMLDIDHFKAINDNWGHPVGDRILTSAASVLANNLREFDEIGRYGGEEFLLVLQGTDVD 713 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAK 248 A ++A R+ + Q+ G SI ++ S G+A ++P I +I RAD+ALY AK Sbjct: 714 GAVVMAERCRQSLATIQVLSDEGASIGVSASFGVAASQAQQPTDIEALIQRADRALYRAK 773 Query: 249 KSGRNRV 255 + GRNRV Sbjct: 774 EKGRNRV 780 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 12/171 (7%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S D L+G+ N + ++ E L++ D+D+FK+IND +GHP GD + Sbjct: 203 SLTDALTGIHNRRSLFQILDRQVAHAHKQEEPLAVALLDLDHFKRINDEYGHPTGDAALK 262 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + L VGR GGEEF S + LRK +E + +G +I Sbjct: 263 AAAAVLEKGLSEGDSVGRFGGEEFMLVMPNCSRSQCQQRCEALRKSLERVECYSENGEAI 322 Query: 217 HITISAGIAERC--HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIEN 263 + S G+ + P+ + ++ AD ALY AK +GRN+VV DI++ Sbjct: 323 ALRGSFGVVWYSGQSQRPLVSDGVVQVADAALYRAKNAGRNQVV-LQDIDD 372 >gi|330819964|ref|YP_004348826.1| Diguanylate cyclase [Burkholderia gladioli BSR3] gi|327371959|gb|AEA63314.1| Diguanylate cyclase [Burkholderia gladioli BSR3] Length = 505 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 15/187 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L++ +++ LSR D L+GLLN A ++L N +S++F D D+FKQ Sbjct: 318 LRDNLRKQQKLTDLSRTDALTGLLNRRALDAALEDEWYRIQRGNSCMSVLFIDADHFKQY 377 Query: 143 NDNFGHPVGDKVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND GH GD + FL++ + V G R GGEEF A + E AA +A + Sbjct: 378 NDVHGHARGDTALRFLAECIRKHVRRHGD--IAARYGGEEFVAVLANTDENGAARVAQAI 435 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257 R+ IE ++++ P T+S G A P S + +RAD ALY AK+ GRNR VC Sbjct: 436 RQEIETNRLDEFPEPVPAFTVSIGCATGRKGRPASVDALAHRADLALYEAKRRGRNR-VC 494 Query: 258 FSDIENN 264 + +E++ Sbjct: 495 VASMEDD 501 >gi|213423733|ref|ZP_03356713.1| hypothetical protein Salmonentericaenterica_40358 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 348 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 13/199 (6%) Query: 71 LVIISITISLLLG-YISGSILKELFISYN-------RISQLSRIDCLSGLLNHSAFISSL 122 LV +++T L+ G +I E ++ Y R+ ++ D L+G N + S L Sbjct: 149 LVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFL 208 Query: 123 GS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178 G E +++ D+DYFK NDN+GH GD +A ++ + TP V R GGE Sbjct: 209 GDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPADLVARYGGE 268 Query: 179 EFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 EF SS EAA++A ++ + E + +++S S +T+S GI + ++ II Sbjct: 269 EFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTAGDTVTGII 328 Query: 238 YRADQALYVAKKSGRNRVV 256 RAD+ALY AK+ GRNR V Sbjct: 329 ARADEALYRAKQQGRNRWV 347 >gi|115525797|ref|YP_782708.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] gi|115519744|gb|ABJ07728.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] Length = 260 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 19/232 (8%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG----YISGSILKEL 93 ATV +A I ++G P + +V S +++S+ +S LL Y S +L++L Sbjct: 25 LTATVTSVAVIA--HLGADPSVTVPVGMV-TASAIMVSVVVSTLLSGALSYRSALLLQQL 81 Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 + + ++SR D L+GLLN F + N ++ + DID+FK +ND+F Sbjct: 82 TKAQAELLRVSRTDPLTGLLNRRGFDEAAVAVLQQARQANREVVALMGDIDHFKSVNDHF 141 Query: 147 GHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH GD+V+ + L + V R GGEEFAA +G S +A A LR++ Sbjct: 142 GHEFGDRVLCEIGGVLQRFAASHGALVARHGGEEFAALFVGVSAAQAVQYAETLRELCRT 201 Query: 206 S-QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ ++ P IT+S G+ + +S+I+ AD+ALY AK+ GR+RVV Sbjct: 202 EVRLGAATAP---ITLSIGLTSHIGETELSSIMRWADRALYQAKERGRDRVV 250 >gi|78356877|ref|YP_388326.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219282|gb|ABB38631.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 525 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 87/162 (53%), Gaps = 10/162 (6%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N F + L G Y+ L+++ DIDYFKQIND FGH GD V+ L+ Sbjct: 354 DGLTQLHNRRHFDTRLREELDRHGRYSMPLTLMMLDIDYFKQINDRFGHQAGDAVLRELA 413 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L T + R GGEEF A + EQ+A +LA LRK IE S++ G +I T Sbjct: 414 SVLRETIRTTDYCARYGGEEFVAILPHTDEQQARVLAERLRKNIE-SRVFRHHGKTIQAT 472 Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S G+ + P ++ AD ALY+AK +GRN V F+ Sbjct: 473 VSIGLTGFKPGALTPRDELVREADAALYLAKANGRNVVCTFA 514 >gi|309791726|ref|ZP_07686216.1| serine/threonine protein kinase [Oscillochloris trichoides DG6] gi|308226219|gb|EFO79957.1| serine/threonine protein kinase [Oscillochloris trichoides DG6] Length = 625 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/136 (41%), Positives = 82/136 (60%), Gaps = 3/136 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N ++ +F DID+FK +ND FGH VGDKV+ +L+ L V + + V R GGEEF ++ Sbjct: 490 NGNIAAIFIDIDHFKDVNDTFGHGVGDKVLEYLASLLRQVRSSDI-VARYGGEEFVIISI 548 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQAL 244 G + Q + A LR+ + +N+ G I ITIS G+A + E ++ ++ ADQAL Sbjct: 549 GHTTQHVRLFAERLRQEVAQQPVNLPEG-QIAITISLGVASLTPQIESLAALLRFADQAL 607 Query: 245 YVAKKSGRNRVVCFSD 260 Y AK SGRNRV + + Sbjct: 608 YQAKTSGRNRVCVWGE 623 >gi|156972544|ref|YP_001443451.1| diguanylate cyclase [Vibrio harveyi ATCC BAA-1116] gi|156524138|gb|ABU69224.1| hypothetical protein VIBHAR_00176 [Vibrio harveyi ATCC BAA-1116] Length = 354 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 13/168 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +LS D L+G+LN AF++ L ++ LS + DID+FK+IND GH G Sbjct: 167 RLKELSETDELTGVLNRRAFLTRLDKAMSSHLRPSQTLSCIMIDIDHFKEINDQVGHFSG 226 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI ++ F+GRLGGEEFA + +S +A +A +R+ I+N+ + Sbjct: 227 DQVIHHVAKICQRAIRGSDFIGRLGGEEFAVILVNTSAIQAYDVAERIREAIQNAPCKV- 285 Query: 212 SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 G I T+S G+AE + E +S+ ++ AD+A+Y +K SGRN+V Sbjct: 286 DGIEISTTVSIGVAE--YDEQVSSTTELMVNADKAMYYSKHSGRNQVT 331 >gi|23501935|ref|NP_698062.1| GGDEF domain-containing protein [Brucella suis 1330] gi|161619007|ref|YP_001592894.1| diguanylate cyclase [Brucella canis ATCC 23365] gi|254704346|ref|ZP_05166174.1| diguanylate cyclase [Brucella suis bv. 3 str. 686] gi|23347879|gb|AAN29977.1| GGDEF domain protein [Brucella suis 1330] gi|161335818|gb|ABX62123.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365] Length = 264 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 18/226 (7%) Query: 47 NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG---------YISGSILKELFI-- 95 ++ LF +G T + E L+ IS+++ LL ++ LKE + Sbjct: 14 SVVLFCVGATSITA--FWSGETPGLMAISLSLGFLLVMIFPFSAFIFLRYDKLKEAYAQL 71 Query: 96 --SYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150 S+ + +RID ++GLLN A ++ S E +++ D D+FK IND+FGH V Sbjct: 72 EKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGHGV 131 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ + Sbjct: 132 GDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPFHT 191 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 192 TEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237 >gi|195953692|ref|YP_002121982.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp. Y04AAS1] gi|195933304|gb|ACG58004.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp. Y04AAS1] Length = 610 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N L Y LS++ FDID+FK IND FGH VGDKV+ +S Sbjct: 456 DTLTGIYNRRYLKDKLERHVNLAKRYERPLSVIMFDIDFFKHINDTFGHDVGDKVLIAIS 515 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + R GGEEF A +++++A ILA LR +I N ++ G I++T Sbjct: 516 KVVSENIRNTDIFARYGGEEFIIVAPETTKEDAKILAEKLRSLIRN--LHFEEG--INVT 571 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S G+ + T++ R D ALY AK++GRNRVV Sbjct: 572 CSFGVVSLEKPDTKETLLKRVDNALYEAKRTGRNRVVVL 610 >gi|323698965|ref|ZP_08110877.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio sp. ND132] gi|323458897|gb|EGB14762.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio desulfuricans ND132] Length = 780 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 9/169 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 + + L+ D L+G N F+S L YN L ++ DID+FK+IND FGHP Sbjct: 613 DELRTLASTDPLTGASNRRQFMSRLSEEFERCKRYNTSLVLLSLDIDHFKRINDTFGHPA 672 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ L T GR+GGEEF AA + A LR+ +E ++ Sbjct: 673 GDDVLKELVALCRSTLRTTDLFGRVGGEEFQAALTQTRIGAGENTAERLRRRVERCEVK- 731 Query: 211 SSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + G +I TIS G+ A R I ++ RAD ALY AK++GRNRV+ Sbjct: 732 THGETITFTISIGVTALRPEDGSIEGLLKRADDALYQAKRNGRNRVMVL 780 >gi|89092700|ref|ZP_01165653.1| GGDEF domain protein [Oceanospirillum sp. MED92] gi|89083212|gb|EAR62431.1| GGDEF domain protein [Oceanospirillum sp. MED92] Length = 322 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 96/180 (53%), Gaps = 11/180 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIND 144 EL + ++ LSR D L+GL N + L + E+ ++V FDID+FK++ND Sbjct: 145 ELQQANKKLQALSREDRLTGLFNRGYWEECLNNEFERFNRSQMTSTLVMFDIDHFKRVND 204 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+VI ++D L +GR GGEE+ A G++ + A I A LR IE Sbjct: 205 TYGHQAGDEVIRVVADTLREQARKTDILGRYGGEEYGAILTGTNGENAMIFAERLRARIE 264 Query: 205 NSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 S + + TIS G++E H P + ++DQALY +K+SGRN V F + E Sbjct: 265 -SLVVPYGEHQLKFTISIGVSELTYEHDSP-KEWLEQSDQALYKSKQSGRNWVTLFGESE 322 >gi|271501959|ref|YP_003334985.1| diguanylate cyclase [Dickeya dadantii Ech586] gi|270345514|gb|ACZ78279.1| diguanylate cyclase [Dickeya dadantii Ech586] Length = 514 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 7/164 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R+S + D LSG+LN + S+ G Y +K+S++ DID+FK IND+FGH VGD V Sbjct: 341 RLSSEAHTDPLSGMLNRRGMLESMEEIRGEY-KKVSVIAIDIDHFKSINDSFGHDVGDMV 399 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I LS Q+ F V R+GGEEF G+ A ++A LR + N+ + + Sbjct: 400 IRKLSQQIRKNFRKTDLVCRIGGEEFLILLPGADIHVATVIAERLRNNVANT-VYVPGSQ 458 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +TIS G+ K + I AD ALY AK GRN+VV Sbjct: 459 HHQVTISIGVTTFNPQKSALDIAIKTADNALYKAKNGGRNQVVV 502 >gi|225850486|ref|YP_002730720.1| signal transduction response regulator [Persephonella marina EX-H1] gi|225646402|gb|ACO04588.1| signal transduction response regulator [Persephonella marina EX-H1] Length = 331 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 13/161 (8%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+GL+N F I N S+++ D+D FK INDN+GH VGD V+ + Sbjct: 169 MDFLTGLVNRRRFERALEDAIKDFEKRNYPFSLIYVDVDNFKDINDNYGHSVGDIVLKEI 228 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS--- 215 + +GR+GGEEFA G ++A +A LR II+N +I I GP Sbjct: 229 ATIFKFYLRANTIIGRIGGEEFAILLPGVEIEDAVKIAERLRNIIQNREIRI--GPDRDE 286 Query: 216 -IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T S G+ + + +++I++RAD A+Y AKK+G+N+V Sbjct: 287 ILRVTASFGVTQVKKGDTVNSILHRADTAMYRAKKTGKNKV 327 >gi|298490636|ref|YP_003720813.1| response regulator receiver modulated diguanylate cyclase ['Nostoc azollae' 0708] gi|298232554|gb|ADI63690.1| response regulator receiver modulated diguanylate cyclase ['Nostoc azollae' 0708] Length = 317 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 9/177 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 ++L+E ++ L+ D L+G+ N I YN +++ DID+FK Sbjct: 137 NLLQEQVELVKQLETLANTDPLTGVWNRRYLLMIAEQEIKRSQLYNFSFAVLLIDIDHFK 196 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND +GH +GD VI F++ ++ + GR GGEEF A + EA I+A +R Sbjct: 197 KINDTYGHSIGDDVIIFMTKTVLYHLQSTDCFGRFGGEEFVALLPETDMDEAMIVAECIR 256 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+N I + ITIS G++ R + I +I+ RADQALY AK GRNRV+ Sbjct: 257 ENIKNQYITFEEQ-KVSITISIGVSSYRTGDKNIDSILRRADQALYQAKHEGRNRVI 312 >gi|260566406|ref|ZP_05836876.1| diguanylate cyclase [Brucella suis bv. 4 str. 40] gi|261755019|ref|ZP_05998728.1| diguanylate cyclase [Brucella suis bv. 3 str. 686] gi|260155924|gb|EEW91004.1| diguanylate cyclase [Brucella suis bv. 4 str. 40] gi|261744772|gb|EEY32698.1| diguanylate cyclase [Brucella suis bv. 3 str. 686] Length = 255 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 18/226 (7%) Query: 47 NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG---------YISGSILKELFI-- 95 ++ LF +G T + E L+ IS+++ LL ++ LKE + Sbjct: 5 SVVLFCVGATSITA--FWSGETPGLMAISLSLGFLLVMIFPFSAFIFLRYDKLKEAYAQL 62 Query: 96 --SYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150 S+ + +RID ++GLLN A ++ S E +++ D D+FK IND+FGH V Sbjct: 63 EKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGHGV 122 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ + Sbjct: 123 GDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPFHT 182 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 183 TEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 228 >gi|89897543|ref|YP_521030.1| hypothetical protein DSY4797 [Desulfitobacterium hafniense Y51] gi|89336991|dbj|BAE86586.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 410 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 11/177 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137 S + +ELF S + L+ D L+G+ N ++ LG+ N S++ FDID Sbjct: 214 SQRLAQELFESQKELEDLATTDPLTGISNRLK-LNELGNNEMIRSRRLNHPFSVIVFDID 272 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK++ND GHP+GDK++ L+ ++ F GRLGG+EF +S Q+ +A Sbjct: 273 HFKEVNDTCGHPIGDKLLVELTQKIKAEIRDIDFFGRLGGDEFVLLFPETSIQKCHAVAE 332 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253 LR++ + + +H++IS GIAE ++ I ++ RAD+ LY AK SGRN Sbjct: 333 RLRQVTNDVALQFED-IKVHVSISLGIAEMTLEDSTIEDLLKRADENLYKAKHSGRN 388 >gi|294852356|ref|ZP_06793029.1| GGDEF domain-containing protein [Brucella sp. NVSL 07-0026] gi|294820945|gb|EFG37944.1| GGDEF domain-containing protein [Brucella sp. NVSL 07-0026] Length = 266 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148 +L S+ + +RID ++GLLN A ++ S E +++ D D+FK IND+FGH Sbjct: 72 QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 131 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ Sbjct: 132 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 191 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 192 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 239 >gi|163782872|ref|ZP_02177868.1| hypothetical protein HG1285_16091 [Hydrogenivirga sp. 128-5-R1-1] gi|159881993|gb|EDP75501.1| hypothetical protein HG1285_16091 [Hydrogenivirga sp. 128-5-R1-1] Length = 475 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 8/161 (4%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F+ + + Y E LS++ DID FK INDN+GH VGD V+ L+ Sbjct: 310 DPLTGLNNRRFFMENARTIIDLSKRYREPLSLLMMDIDNFKSINDNYGHDVGDLVLKKLA 369 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + T R GGEEF + E+ A ++A +R NS + + G I + Sbjct: 370 EVIRKNVRTSDIPARFGGEEFVVLLPRTDEKGALMVAERIRNEFRNSSVKV-DGKDIWTS 428 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S G++ ++ I ++I +AD+ALY AK+SG++RVV + + Sbjct: 429 VSIGLSVLSEEDDIDSLIKKADEALYQAKRSGKDRVVIYRE 469 >gi|253997289|ref|YP_003049353.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylotenera mobilis JLW8] gi|253983968|gb|ACT48826.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylotenera mobilis JLW8] Length = 591 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + +RID L+G+ N F I Y+ LS DID FKQ+ND +GH GD Sbjct: 423 LKRQARIDFLTGVSNRRYFMEQAEQEIQRTSRYDTPLSFFMLDIDLFKQVNDTYGHKSGD 482 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ +GR+GGEEFA + + +AA +A LR ++ + ++ + Sbjct: 483 IVLKRMASVCRETLREIDIIGRVGGEEFAILLPETDKAQAAEVAERLRSVLADEKVPTEA 542 Query: 213 GPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255 G I T+S G+A R ++ I ++ AD+ALY AKK GRNRV Sbjct: 543 GAPIQFTVSIGVASRVSSQDNIDMLLNLADEALYQAKKYGRNRV 586 >gi|329910341|ref|ZP_08275285.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327546203|gb|EGF31245.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 439 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 14/177 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 +E+ +Y R + D L+GL N AF + E+ LS++ FD D+FK IN Sbjct: 257 REVSENYRRATA---CDHLTGLANRHAFFDAAAIELERMRRVPRSLSLILFDADFFKSIN 313 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GHP GD V+ L+ + F V R+GGEEFA ++ + A ++A LR+ + Sbjct: 314 DRYGHPAGDVVLRELATAMKKTFRQIDMVARVGGEEFAILLPSTNLEGAMLVAERLREAV 373 Query: 204 ENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258 + + I G I T+S G+A H+ + ++ RADQALY AK SGRNR+V + Sbjct: 374 AATVLQI-DGTKIKFTVSGGVAT-MHESVLGLDALMKRADQALYAAKTSGRNRIVSW 428 >gi|17987212|ref|NP_539846.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1 str. 16M] gi|260564059|ref|ZP_05834545.1| diguanylate cyclase [Brucella melitensis bv. 1 str. 16M] gi|260754794|ref|ZP_05867142.1| diguanylate cyclase [Brucella abortus bv. 6 str. 870] gi|260883811|ref|ZP_05895425.1| diguanylate cyclase [Brucella abortus bv. 9 str. C68] gi|261214045|ref|ZP_05928326.1| diguanylate cyclase [Brucella abortus bv. 3 str. Tulya] gi|265991139|ref|ZP_06103696.1| diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1] gi|265994975|ref|ZP_06107532.1| diguanylate cyclase [Brucella melitensis bv. 3 str. Ether] gi|265999459|ref|ZP_05466481.2| diguanylate cyclase [Brucella melitensis bv. 2 str. 63/9] gi|17982883|gb|AAL52110.1| diguanylate cyclase/phosphodiesterase domain 1 (ggdef) [Brucella melitensis bv. 1 str. 16M] gi|260154075|gb|EEW89167.1| diguanylate cyclase [Brucella melitensis bv. 1 str. 16M] gi|260674902|gb|EEX61723.1| diguanylate cyclase [Brucella abortus bv. 6 str. 870] gi|260873339|gb|EEX80408.1| diguanylate cyclase [Brucella abortus bv. 9 str. C68] gi|260915652|gb|EEX82513.1| diguanylate cyclase [Brucella abortus bv. 3 str. Tulya] gi|262766088|gb|EEZ11877.1| diguanylate cyclase [Brucella melitensis bv. 3 str. Ether] gi|263001923|gb|EEZ14498.1| diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1] gi|263094093|gb|EEZ18015.1| diguanylate cyclase [Brucella melitensis bv. 2 str. 63/9] Length = 255 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148 +L S+ + +RID ++GLLN A ++ S E +++ D D+FK IND+FGH Sbjct: 61 QLEKSHVELQARARIDHMTGLLNREALFETMKISRSRIETGTLLVIDADHFKAINDSFGH 120 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ Sbjct: 121 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 180 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 181 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 228 >gi|91977180|ref|YP_569839.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91683636|gb|ABE39938.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5] Length = 411 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 9/162 (5%) Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+GL N F + G E+ ++++ FD+D+FK IND FGHP GD+VI Sbjct: 220 LDPLTGLFNRRGFSEATGRMIEREAEAGRPVTVMIFDLDHFKSINDRFGHPAGDEVIKLF 279 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + GR+GGEEF AA L S +EA A +R+ E + + P I Sbjct: 280 ATIVSGSLRMSDLCGRIGGEEF-AALLPCSIEEAMTAAERVREAFEGCGLEVDGAP-IAT 337 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 T+S G+A + ++ AD ALY AK+ GRNRVV ++ Sbjct: 338 TVSIGVAGGPANIELEVLLAAADTALYQAKRGGRNRVVATAE 379 >gi|307720349|ref|YP_003891489.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294] gi|306978442|gb|ADN08477.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294] Length = 422 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 89/166 (53%), Gaps = 11/166 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +L+ ID L+ + N I+ Y E I FDID FK +ND +GH G Sbjct: 260 KLKKLATIDSLTKIYNRYKIDEAINIQIARYRRYKEPFCIFMFDIDNFKTVNDTYGHDAG 319 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ LS + T GR GGEEF +S++EA ++ LRKI+E S I+ Sbjct: 320 DRVLKALSRLVSNHIRTTDIFGRWGGEEFVIILENTSKEEAFVITEKLRKIVEVSVID-- 377 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ITIS G+A+ E ++ +AD+ALY AK++GRN+VV Sbjct: 378 --GKYKITISIGVAQYEESESREELVKKADKALYRAKENGRNQVVA 421 >gi|300692375|ref|YP_003753370.1| hypothetical protein RPSI07_2743 [Ralstonia solanacearum PSI07] gi|299079435|emb|CBJ52108.2| conserved exported protein of unknown function, GGDEF domain [Ralstonia solanacearum PSI07] Length = 592 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 15/183 (8%) Query: 90 LKELFISYNR------ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136 L+ + + + R ++ ++ D L+ LLN AF + G+ ++++++ FD+ Sbjct: 391 LERMRLEHERARLMEELATMAETDSLTQLLNRRAFETRARAMCEARGTEAQRIALIMFDV 450 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND +GH GD+ + ++D + V R+GGEEFA AL + A +LA Sbjct: 451 DHFKRINDTYGHAAGDEALRTVADLCRAHWRQSDIVARIGGEEFAVVALVDTATHARVLA 510 Query: 197 NDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +R+ I +++ S P +T S G +A + ++ RAD LY AK +GRNR Sbjct: 511 ERMRQAIAGARVPAGSAPEHGMTASFGVAVASVADAPELEALLRRADHLLYQAKLAGRNR 570 Query: 255 VVC 257 V+ Sbjct: 571 VLA 573 >gi|156740753|ref|YP_001430882.1| diguanylate cyclase [Roseiflexus castenholzii DSM 13941] gi|156232081|gb|ABU56864.1| diguanylate cyclase [Roseiflexus castenholzii DSM 13941] Length = 680 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/164 (39%), Positives = 94/164 (57%), Gaps = 12/164 (7%) Query: 106 IDCLSGLLNHSAFISS-----LGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+G+ N +F + L S L+++ FDID+FK +ND +GH VGD+ + L Sbjct: 511 IDELTGVWNRRSFFENARREFLRSQRTLRPLAVLMFDIDHFKSVNDTYGHAVGDQALRDL 570 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +++ +GR GGEEFA A + A +A LR +EN+ + G SI + Sbjct: 571 AERCRNQLRGIDIIGRYGGEEFAVALPDTDIDAAEHIAERLRTAVENTPFATAQG-SISL 629 Query: 219 TISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259 TIS G+A CH + +T II RAD+ALY+AK+SGRN V +S Sbjct: 630 TISIGVAV-CHPDDQTTLDAIIDRADRALYLAKRSGRNSVRVWS 672 >gi|148559944|ref|YP_001258991.1| GGDEF domain-containing protein [Brucella ovis ATCC 25840] gi|148371201|gb|ABQ61180.1| GGDEF domain protein [Brucella ovis ATCC 25840] Length = 264 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148 +L S+ + +RID ++GLLN A ++ S E +++ D D+FK IND+FGH Sbjct: 70 QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 129 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ Sbjct: 130 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTSF 189 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 190 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237 >gi|86750103|ref|YP_486599.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] gi|86573131|gb|ABD07688.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] Length = 352 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 94/179 (52%), Gaps = 9/179 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L S IS S D L+GL N F + S LS++ DID+FK NDN Sbjct: 164 LQASLEAISAESLTDPLTGLGNRKHFDRVVTEAVRSATVSRLPLSLLMMDIDHFKSFNDN 223 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD+V+ + L T R GGEEFA + ++A ++A+D+R+++ + Sbjct: 224 YGHLTGDQVLRLVGMTLKQSIKTKNVPARYGGEEFAVVLPDTPLRQALMVADDIRRVVMS 283 Query: 206 SQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ S I +T+SAG++ + +I RAD LY AK++GRNRV+C +D E Sbjct: 284 KELKKKSTGEILGRVTLSAGVSTLKPDDDADALIERADACLYSAKRNGRNRVICETDPE 342 >gi|225852560|ref|YP_002732793.1| GGDEF domain-containing protein [Brucella melitensis ATCC 23457] gi|254689285|ref|ZP_05152539.1| GGDEF domain protein [Brucella abortus bv. 6 str. 870] gi|254693769|ref|ZP_05155597.1| GGDEF domain protein [Brucella abortus bv. 3 str. Tulya] gi|256044716|ref|ZP_05447620.1| GGDEF domain protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113608|ref|ZP_05454428.1| GGDEF domain protein [Brucella melitensis bv. 3 str. Ether] gi|256257535|ref|ZP_05463071.1| GGDEF domain protein [Brucella abortus bv. 9 str. C68] gi|297248377|ref|ZP_06932095.1| GGDEF domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|225640925|gb|ACO00839.1| GGDEF domain protein [Brucella melitensis ATCC 23457] gi|297175546|gb|EFH34893.1| GGDEF domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|326409078|gb|ADZ66143.1| GGDEF domain-containing protein [Brucella melitensis M28] gi|326538784|gb|ADZ86999.1| GGDEF domain protein [Brucella melitensis M5-90] Length = 264 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148 +L S+ + +RID ++GLLN A ++ S E +++ D D+FK IND+FGH Sbjct: 70 QLEKSHVELQARARIDHMTGLLNREALFETMKISRSRIETGTLLVIDADHFKAINDSFGH 129 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ Sbjct: 130 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 189 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 190 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237 >gi|222099839|ref|YP_002534407.1| Diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Thermotoga neapolitana DSM 4359] gi|221572229|gb|ACM23041.1| Diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Thermotoga neapolitana DSM 4359] Length = 1178 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 86/157 (54%), Gaps = 12/157 (7%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L+ F+ L Y LS++ DID FK+IND FGH GD + ++ Sbjct: 1017 DSLTGVLSRWYFMERLEEEAYKSTRYRMPLSLIMCDIDDFKKINDQFGHMSGDSALRWIG 1076 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L VGR GGEEF A G+S +EA ++A LR I+ N+ HIT Sbjct: 1077 KKLFSSLRKSDLVGRYGGEEFVVALPGTSLKEARLVAEKLRNSIKTDPENLH-----HIT 1131 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+AE E I I RAD+ALY+AK G++RVV Sbjct: 1132 VSFGVAEYIPGESIFETIRRADEALYMAKSLGKDRVV 1168 >gi|115361086|ref|YP_778223.1| diguanylate cyclase [Burkholderia ambifaria AMMD] gi|115286414|gb|ABI91889.1| diguanylate cyclase [Burkholderia ambifaria AMMD] Length = 506 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 12/174 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151 ++ L+R D L+GL N A ++L E+L S++F D D+FKQ ND +GH G Sbjct: 328 LTDLTRTDPLTGLHNRRALDAALADEWERLQRGSDGSLSVLFIDADHFKQYNDRYGHAQG 387 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 D + FL++ + R GGEEF A + E+ A +A +R +E +Q++ Sbjct: 388 DTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDERGAQQVAEAIRHAVERNQLDG 447 Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ P+ ++I R + + ++AD ALY AK+ GRNR VC +D+E Sbjct: 448 FDATMPAFTVSIGCATGHRARPPSMHALTHQADLALYAAKRQGRNR-VCVADVE 500 >gi|301061890|ref|ZP_07202620.1| diguanylate cyclase (GGDEF) domain protein [delta proteobacterium NaphS2] gi|300443994|gb|EFK08029.1| diguanylate cyclase (GGDEF) domain protein [delta proteobacterium NaphS2] Length = 789 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 10/179 (5%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138 G + +E+ + +IS+++ +D L+GL N F+ +L + + LS+ DID Sbjct: 609 KGKLKREIRSAQRKISEMATLDELTGLYNRRYFMEALDRERARAERHQKALSLCMLDIDL 668 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK++NDN GH GD V+A + + + F R GGEEFA + + A + Sbjct: 669 FKKVNDNLGHTAGDLVLANMGEIIREWSRQTDFPCRYGGEEFAVILPETDLEGARVACER 728 Query: 199 LRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRV 255 LR + S++ +GP I +T+S GI E K+ + +I RAD+A Y AK++GRNRV Sbjct: 729 LRHKVAESRVEWRTGP-IRVTVSIGITENRIGIKDSLRKLIDRADEARYHAKETGRNRV 786 >gi|34498707|ref|NP_902922.1| hypothetical protein CV_3252 [Chromobacterium violaceum ATCC 12472] gi|34104558|gb|AAQ60916.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 573 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 12/169 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + ++++SRID L+G+ N AF I+ G E +++ FDID+FKQ+ND +GH Sbjct: 403 DELTEMSRIDFLTGITNRRAFTQAAHAEIARAGLARESATLILFDIDHFKQVNDLYGHDC 462 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + V GR GGEEF A G+S EA LA LR I S Sbjct: 463 GDAVLVHVAAIVERVCREGDLAGRYGGEEFVVLACYRGASNGEA--LAERLRAAIAESPC 520 Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 + SG + +T S G+A P + ++ AD+ALY AK+ GRNRV+ Sbjct: 521 LLPSGQKLAVTASFGVATLGEAAPSLERLLQAADRALYAAKRLGRNRVM 569 >gi|157691645|ref|YP_001486107.1| ABC transporter ATP-binding protein [Bacillus pumilus SAFR-032] gi|157680403|gb|ABV61547.1| ABC superfamily ATP binding cassette transporter, binding protein [Bacillus pumilus SAFR-032] Length = 361 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 9/158 (5%) Query: 107 DCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+G+LN + AF ++S+++ DIDYFK IND +GH GD V+ + Sbjct: 195 DFLTGVLNKRKFDEVLNDAFSMKFKHPTHQMSLIYLDIDYFKSINDQYGHHEGDMVLKEI 254 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +L+ + ++GR+GGEEFA + ++ +A LR+ I + + + +G SIHI Sbjct: 255 GKRLIKNTRSSDYIGRIGGEEFAVFLPNCTVEKTWQIAERLRRKIADQPVYLQNGMSIHI 314 Query: 219 TISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 T+S G A P I + ADQ LY AK+SGRN+V Sbjct: 315 TVSLGCAYYSGTSPDIKQLPIIADQELYKAKQSGRNQV 352 >gi|261822226|ref|YP_003260332.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] gi|261606239|gb|ACX88725.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] Length = 490 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 66/165 (40%), Positives = 91/165 (55%), Gaps = 8/165 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ Q++ D L+GL+N AF LG+ ++ LSI+ DID+FK+IND +GH VG Sbjct: 324 RLEQMATTDKLTGLMNRQAFDYLFHRLGTKSVLQHKSLSILLIDIDHFKKINDQYGHNVG 383 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ +S L + R GGEEF A A LR+ IE + + Sbjct: 384 DLVLQEISALLSTNTRSSDRSCRWGGEEFVILLDNCDINAAQQRAEALRQSIEITHLPYR 443 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G +I +T+S G+AE E +S +I RAD ALY AK+ GRNRVV Sbjct: 444 EG-TIKVTVSCGVAEYRAGETLSMLINRADIALYQAKQQGRNRVV 487 >gi|306843929|ref|ZP_07476524.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1] gi|306275684|gb|EFM57408.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1] Length = 264 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 3/168 (1%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148 +L S+ + +RID ++GLLN A ++ S E +++ D D+FK IND FGH Sbjct: 70 QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDTFGH 129 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ Sbjct: 130 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 189 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 190 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237 >gi|219670664|ref|YP_002461099.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2] gi|219540924|gb|ACL22663.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2] Length = 407 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 11/177 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137 S + +ELF S + L+ D L+G+ N ++ LG+ N S++ FDID Sbjct: 211 SQRLAQELFESQKELEDLATTDPLTGISNRLK-LNELGNNEMIRSRRLNHPFSVIVFDID 269 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK++ND GHP+GDK++ L+ ++ F GRLGG+EF +S Q+ +A Sbjct: 270 HFKEVNDTCGHPIGDKLLVELTQKIKAEIRDIDFFGRLGGDEFVLLFPETSIQKCHAVAE 329 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253 LR++ + + +H++IS GIAE ++ I ++ RAD+ LY AK SGRN Sbjct: 330 RLRQVTNDVALQFED-IKVHVSISLGIAEMTLEDSTIEDLLKRADENLYKAKHSGRN 385 >gi|254719129|ref|ZP_05180940.1| GGDEF domain protein [Brucella sp. 83/13] gi|265984124|ref|ZP_06096859.1| diguanylate cyclase [Brucella sp. 83/13] gi|306838414|ref|ZP_07471259.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653] gi|264662716|gb|EEZ32977.1| diguanylate cyclase [Brucella sp. 83/13] gi|306406554|gb|EFM62788.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653] Length = 264 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148 +L S+ + +RID ++GLLN A ++ S E +++ D D+FK IND+FGH Sbjct: 70 QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 129 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ Sbjct: 130 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 189 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 190 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237 >gi|254701804|ref|ZP_05163632.1| GGDEF domain protein [Brucella suis bv. 5 str. 513] gi|254710139|ref|ZP_05171950.1| GGDEF domain protein [Brucella pinnipedialis B2/94] gi|254714138|ref|ZP_05175949.1| GGDEF domain protein [Brucella ceti M644/93/1] gi|254716804|ref|ZP_05178615.1| GGDEF domain protein [Brucella ceti M13/05/1] gi|256031634|ref|ZP_05445248.1| GGDEF domain protein [Brucella pinnipedialis M292/94/1] gi|256061148|ref|ZP_05451302.1| GGDEF domain protein [Brucella neotomae 5K33] gi|256159776|ref|ZP_05457519.1| GGDEF domain protein [Brucella ceti M490/95/1] gi|256255034|ref|ZP_05460570.1| GGDEF domain protein [Brucella ceti B1/94] gi|256369482|ref|YP_003106990.1| GGDEF domain protein [Brucella microti CCM 4915] gi|260168763|ref|ZP_05755574.1| GGDEF domain protein [Brucella sp. F5/99] gi|255999642|gb|ACU48041.1| GGDEF domain protein [Brucella microti CCM 4915] Length = 264 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148 +L S+ + +RID ++GLLN A ++ S E +++ D D+FK IND+FGH Sbjct: 70 QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 129 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ Sbjct: 130 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 189 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 190 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237 >gi|225627531|ref|ZP_03785568.1| GGDEF domain protein [Brucella ceti str. Cudo] gi|225617536|gb|EEH14581.1| GGDEF domain protein [Brucella ceti str. Cudo] Length = 266 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148 +L S+ + +RID ++GLLN A ++ S E +++ D D+FK IND+FGH Sbjct: 72 QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 131 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ Sbjct: 132 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 191 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 192 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 239 >gi|260221672|emb|CBA30470.1| hypothetical protein Csp_C23710 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 382 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 90/167 (53%), Gaps = 12/167 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 NR+ L+ D L+GL N + +L + +S++ D+DYFK IND +GH Sbjct: 216 NRL--LAMQDELTGLSNRRFIMEALALQLAQARRNGKPVSVLMIDVDYFKSINDTYGHLS 273 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ L+ L GR GGEEF + A ILA +LR +E+++ + Sbjct: 274 GDRVLRNLATSLRSRLRAQDMAGRWGGEEFLVVLPDTDAAGATILAGNLRAEVEDARWSA 333 Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255 G SI +T+S G+ C E + T+I ADQALY AK++GRNRV Sbjct: 334 QDGRSIPLTLSIGV-HTCDSATEELDTVISAADQALYRAKQAGRNRV 379 >gi|116332510|ref|YP_802227.1| GGDEF family protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116127377|gb|ABJ77469.1| GGDEF family protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 535 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 98/182 (53%), Gaps = 19/182 (10%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYFKQINDNFGH 148 S N++++L D L+G+ N F+ ++G+ + K +I+ DID+FKQ+ND FGH Sbjct: 359 SMNQVAKLIHTDPLTGIWNRRGFLKLTQRSLTIGNRHGKDWTILLVDIDHFKQVNDKFGH 418 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDK + ++ L V R GGEEFA G ++ + +A DLRK +EN Q+ Sbjct: 419 DTGDKTLIKVAQVLSRSIRQTDAVCRWGGEEFAIFLFGVGQKASTDIAEDLRKEVEN-QV 477 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF-------SDI 261 + G +T+S G+++ + ADQALY AK SGRNRV F SD+ Sbjct: 478 RLDDGNP--VTLSIGVSQGTLD--LEEAFVNADQALYRAKSSGRNRVCAFDPKVFSHSDL 533 Query: 262 EN 263 +N Sbjct: 534 KN 535 >gi|242278391|ref|YP_002990520.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio salexigens DSM 2638] gi|242121285|gb|ACS78981.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio salexigens DSM 2638] Length = 635 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 8/166 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G N F+S L Y +L ++ DID+FK IND +GH VGD Sbjct: 466 VKRLASTDYLTGAHNRRHFMSRAETELDRLTRYGGELYLMMLDIDHFKNINDTYGHSVGD 525 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ + + T GRLGGEEFAA + S A +A LR+ IE+ ++ I Sbjct: 526 VVLKEMVKCCIETLRTSDVFGRLGGEEFAALLVHGSIDSAIQVAERLREAIEDMEVRIGR 585 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + +T+S G+ C E I + AD+ LY AK+ GRNRVV + Sbjct: 586 -HVVKLTVSIGLTMVCADEDIEIALKHADKCLYQAKEQGRNRVVSY 630 >gi|312881671|ref|ZP_07741449.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309370734|gb|EFP98208.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 347 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 15/205 (7%) Query: 65 LVENLSLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 LV N SLV ++I + + +L+ + +S + QL+ D L+G+ N A + + Sbjct: 146 LVINFSLVFVAI-------WATSHVLEVKRRLSETSLGQLASRDALTGVYNRHALVHNYD 198 Query: 124 SYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 Y LS++ D+DYFK +ND FGH VGD+V+ + L+ V R+GGE Sbjct: 199 HYRRSGSKIPLSLLILDLDYFKAVNDKFGHDVGDRVLV-ETATLIDGLSGEHLVYRIGGE 257 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EF A + EA A LR+ IE+ N P I +T S G+ H + +++ Sbjct: 258 EFCIALHDTGSNEARDKAEQLRQAIESYIFNNEENP-IALTASIGVYYCNHFSNLESVLK 316 Query: 239 RADQALYVAKKSGRNRVVCFSDIEN 263 AD+ LY AKK+GRN+V+ + D E Sbjct: 317 AADKELYKAKKNGRNQVMVYCDDEQ 341 >gi|190890170|ref|YP_001976712.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190695449|gb|ACE89534.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 392 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 7/193 (3%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124 E+LSL + I +G +S ++ + + +R+ ++ D L+GLLN A G+ Sbjct: 186 AEDLSLAV-CIAGMTGIGALSLALHQWRLAARHRLEAIT--DPLTGLLNRRAVFDQHGTR 242 Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 +I+ FDID+FK +ND FGH GD+VI +++L RLGGEEFA Sbjct: 243 PMGTTTAIIVFDIDHFKSVNDRFGHAAGDRVITVFAEELRANCSAGDTAARLGGEEFALV 302 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242 A + A +R+ E +I+I G + T+S G+A R T++ AD+ Sbjct: 303 LKEIMPGRAELTAERIRRAFEAREIDI-DGQMLKCTVSVGVAPGRSQMPDFDTMLSAADK 361 Query: 243 ALYVAKKSGRNRV 255 ALY AK+ GRNRV Sbjct: 362 ALYAAKRGGRNRV 374 >gi|261218603|ref|ZP_05932884.1| diguanylate cyclase [Brucella ceti M13/05/1] gi|261222225|ref|ZP_05936506.1| diguanylate cyclase [Brucella ceti B1/94] gi|261317692|ref|ZP_05956889.1| diguanylate cyclase [Brucella pinnipedialis B2/94] gi|261321900|ref|ZP_05961097.1| diguanylate cyclase [Brucella ceti M644/93/1] gi|261325151|ref|ZP_05964348.1| diguanylate cyclase [Brucella neotomae 5K33] gi|261752361|ref|ZP_05996070.1| diguanylate cyclase [Brucella suis bv. 5 str. 513] gi|261758244|ref|ZP_06001953.1| diguanylate cyclase [Brucella sp. F5/99] gi|265988725|ref|ZP_06101282.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1] gi|265998190|ref|ZP_06110747.1| diguanylate cyclase [Brucella ceti M490/95/1] gi|260920809|gb|EEX87462.1| diguanylate cyclase [Brucella ceti B1/94] gi|260923692|gb|EEX90260.1| diguanylate cyclase [Brucella ceti M13/05/1] gi|261294590|gb|EEX98086.1| diguanylate cyclase [Brucella ceti M644/93/1] gi|261296915|gb|EEY00412.1| diguanylate cyclase [Brucella pinnipedialis B2/94] gi|261301131|gb|EEY04628.1| diguanylate cyclase [Brucella neotomae 5K33] gi|261738228|gb|EEY26224.1| diguanylate cyclase [Brucella sp. F5/99] gi|261742114|gb|EEY30040.1| diguanylate cyclase [Brucella suis bv. 5 str. 513] gi|262552658|gb|EEZ08648.1| diguanylate cyclase [Brucella ceti M490/95/1] gi|264660922|gb|EEZ31183.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1] Length = 255 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148 +L S+ + +RID ++GLLN A ++ S E +++ D D+FK IND+FGH Sbjct: 61 QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 120 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ Sbjct: 121 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 180 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 181 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 228 >gi|254787818|ref|YP_003075247.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237685546|gb|ACR12810.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 319 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 92/172 (53%), Gaps = 13/172 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ LSR D L+GLLN ++ + L + S++ FDID+FK++ND +GHP G Sbjct: 151 KLHTLSRTDGLTGLLNRKSWETELHVEFRRFQRHQHGSSLLMFDIDHFKRVNDTYGHPTG 210 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI + + GR GGEEFA + A ++A LR IE Q+ I+ Sbjct: 211 DEVIRRTAKVVKDALRDIDVAGRYGGEEFAVILTDTDASGAKVVAERLRTTIE--QLTIT 268 Query: 212 -SGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G S+ TIS GIAE +P I AD+ALY AK +GRN V FS+ Sbjct: 269 HEGNSLQFTISLGIAELNPSITDP-GAWIEAADRALYKAKHAGRNNSVIFSN 319 >gi|281412634|ref|YP_003346713.1| diguanylate cyclase [Thermotoga naphthophila RKU-10] gi|281373737|gb|ADA67299.1| diguanylate cyclase [Thermotoga naphthophila RKU-10] Length = 1083 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 85/157 (54%), Gaps = 12/157 (7%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L+ F+ L Y LSI+ D D FK+IND FGH GDK + +L Sbjct: 922 DPLTGVLSRWYFMERLEEEAYKSSRYKSPLSIIMCDADDFKKINDQFGHVAGDKTLNWLG 981 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ V VGR GGEEF A G+S +EA I A LRK + NI H+T Sbjct: 982 RKIRSVLRKSDLVGRYGGEEFIIALPGTSLEEARIAAEKLRKAVMEDPENI-----YHVT 1036 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+AE + E I RAD+ALY+AK G+N VV Sbjct: 1037 LSFGVAEYKNGEDPFETIKRADEALYLAKTLGKNSVV 1073 >gi|186472539|ref|YP_001859881.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum STM815] gi|184194871|gb|ACC72835.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum STM815] Length = 780 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 19/232 (8%) Query: 36 SIFIATVIFIANIFLFYIGLTPF-----YGLEYILVENLSLVIISITISLLLGYISGSIL 90 +++ F LFY TPF + + V V+I++ + + + + Sbjct: 126 PLWLTPAHFCIGTALFYAAGTPFLLSLPHPHGDVSVVCWMWVLIALPTAAVFHFGFYGLR 185 Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIN 143 + F+ +R+++L+ D L+GL N AF+ SSL K S +F DIDYFK +N Sbjct: 186 RNHFLLEDRLARLAATDPLTGLQNRRAFLEQAALRLSSLDP-GAKTSAIFLDIDYFKSLN 244 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH VGD+ ++ ++ L + G V R+GGEEFA G++ + A LA LR Sbjct: 245 DQFGHAVGDQALSDVARVLKEMTGAGDIVSRIGGEEFALLH-GAALRPAVQLAETLR--- 300 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I + P + S G+AE E + ++ RAD+AL AK SGRNRV Sbjct: 301 --AAIGRIARPDGQLGASFGVAEYRPGESVMALLDRADEALLRAKYSGRNRV 350 >gi|116329620|ref|YP_799339.1| GGDEF family protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116122513|gb|ABJ80406.1| GGDEF family protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 535 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 98/182 (53%), Gaps = 19/182 (10%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYFKQINDNFGH 148 S N++++L D L+G+ N F+ ++G+ + K +I+ DID+FKQ+ND FGH Sbjct: 359 SMNQVAKLIHTDPLTGIWNRRGFLKLTQRSLTIGNRHGKDWTILLVDIDHFKQVNDKFGH 418 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDK + ++ L V R GGEEFA G ++ + +A DLRK +EN Q+ Sbjct: 419 DTGDKTLIKVAQVLSRSIRQTDAVCRWGGEEFAIFLFGVGQKASTDIAEDLRKEVEN-QV 477 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF-------SDI 261 + G +T+S G+++ + ADQALY AK SGRNRV F SD+ Sbjct: 478 RLDDGNP--VTLSIGVSQGTLD--LEEAFVNADQALYRAKSSGRNRVCAFDPKVFSHSDL 533 Query: 262 EN 263 +N Sbjct: 534 KN 535 >gi|289208601|ref|YP_003460667.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] gi|288944232|gb|ADC71931.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] Length = 385 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 23/244 (9%) Query: 35 FSIFIATVIFIANIFLFYIGLTPFYGL----EYILVENLSLVIISITISLLLGYISGSIL 90 F++F VI I L G L Y+ V L +I + L Sbjct: 150 FNLFALAVIAITPTLLHAAGFVQHLNLAVYHSYVWVAFLPFALILTLVEFLYW------- 202 Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 L+ + ++Q + D L+GL N F ++ + +S++F DID+FKQ+N Sbjct: 203 -RLYETRIELTQQAERDPLTGLPNRRHFFRVAPRQLAIANRTGQPVSVLFVDIDHFKQVN 261 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH +GD+ + ++ L F V R GGEEF G+ ++A +A LR I Sbjct: 262 DTHGHAMGDRALCHVARLLQATFRESDLVTRHGGEEFLVWLQGTGPRDAEQVAEQLRARI 321 Query: 204 ENSQI--NISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259 + + S P I +T+S GIA + P + T++ RAD A+ AK+ GRN+VV S Sbjct: 322 DREPLAEGGSGHPPIPLTVSIGIASHIPESPEALDTLLTRADDAMSTAKRQGRNKVVLAS 381 Query: 260 DIEN 263 ++ Sbjct: 382 SQQS 385 >gi|37675899|ref|NP_936295.1| hypothetical protein VVA0239 [Vibrio vulnificus YJ016] gi|37200439|dbj|BAC96265.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 380 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 12/192 (6%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130 + L +++ + K I N++ +L+ ID L+G LN AF+ + Y+ + Sbjct: 190 LETLANWVAAQVHKHQQI--NKMIELAHIDPLTGALNRRAFVEATYFINDKPRHYDHHTA 247 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D FK+IND FGHP GDKV+ ++ L + + R GGEEFA + + Sbjct: 248 LLMIDLDKFKEINDQFGHPAGDKVLMQIAATLKKQIRSDDLLARFGGEEFAILLHHVNAE 307 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249 EA LA LR +E I I T+S GIA + ++ AD ALYVAK+ Sbjct: 308 EAMTLAETLRVTVEQLTIEHHQH-RIQCTVSIGIALPSSPNQGFEELMQLADNALYVAKR 366 Query: 250 SGRNRVVCFSDI 261 SGRN+++ SD+ Sbjct: 367 SGRNQII-LSDM 377 >gi|120556751|ref|YP_961102.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120326600|gb|ABM20915.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 405 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 8/167 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + +S+++RID L+GL N AF S +I+ D+D+FK++ND +GH V Sbjct: 220 DELSEIARIDPLTGLYNRRAFDECCDIEFSRAQRSGAPFAIIMCDLDHFKRVNDRYGHHV 279 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++ L V R GGEEF G ++ +A LR ++QI I Sbjct: 280 GDEVLRRFANTLKEHIRKHDVVARFGGEEFVLLLPGKDTEQGLEVAEKLRAKTADTQITI 339 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ S G+A S +++RAD ALY AKK GRNRVV Sbjct: 340 GDDVCLTLSASFGVAHYDSSDREWSAVLHRADNALYAAKKQGRNRVV 386 >gi|312962511|ref|ZP_07777002.1| hypothetical protein PFWH6_4432 [Pseudomonas fluorescens WH6] gi|311283438|gb|EFQ62028.1| hypothetical protein PFWH6_4432 [Pseudomonas fluorescens WH6] Length = 519 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/187 (35%), Positives = 103/187 (55%), Gaps = 14/187 (7%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSI 131 I +LLLG ++L+E +++Q ++ D L+GL N A +S + ++ ++ Sbjct: 340 QIRRALLLG---ATLLQE---KIGKLNQQAQTDALTGLANRRAMQAILSRWQAADKMFAV 393 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 V DID+FK++ND FGH VGD+ + ++ + + R+GGEEF SS Q Sbjct: 394 VSLDIDHFKRVNDTFGHAVGDETLRAIAALIQQNSRSNDLACRVGGEEFVVLLPNSSLQA 453 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250 AA +A LR I + I+ H+T+S G+A R + IS ++ RADQ LY AK+ Sbjct: 454 AADVAERLRHSIAAATIDTVG----HVTVSLGVALWRPGGDSISAVLERADQLLYRAKQD 509 Query: 251 GRNRVVC 257 GRNRVV Sbjct: 510 GRNRVVV 516 >gi|85708036|ref|ZP_01039102.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. NAP1] gi|85689570|gb|EAQ29573.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. NAP1] Length = 408 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 74/192 (38%), Positives = 98/192 (51%), Gaps = 13/192 (6%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLS--RIDCLSGLLNHSAFISS----LGSYN 126 +I++T+ L + G IL L ++ Q++ RID L+GL N +AF L Sbjct: 187 VIAMTV---LPVVLGMILLALVVTDEWEDQIASGRIDALTGLPNRAAFEEQVDELLARAR 243 Query: 127 EK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 E+ +S++ DID+FKQ+ND +GH VGDKVI+ D + GR+GGEEF Sbjct: 244 EERIPVSLLVGDIDHFKQVNDTWGHSVGDKVISAFGDIMARKIRPGDVAGRIGGEEFCVL 303 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 EQ A LA LR + I S T S GIAE E + RAD A Sbjct: 304 VWNCHEQGAVSLAERLRLSFASEAIE-GLPTSESFTASFGIAEWQRGEDYAQCFRRADGA 362 Query: 244 LYVAKKSGRNRV 255 LY AK+SGRNRV Sbjct: 363 LYSAKRSGRNRV 374 >gi|197105175|ref|YP_002130552.1| GGDEF family protein [Phenylobacterium zucineum HLK1] gi|196478595|gb|ACG78123.1| GGDEF family protein [Phenylobacterium zucineum HLK1] Length = 349 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 86/167 (51%), Gaps = 14/167 (8%) Query: 106 IDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D LSGL N AF +L G +++ DID+FK ND +GH GD+VI +++ Sbjct: 182 TDALSGLANRKAFDEALERACDQGEQGGPVTLAVIDIDHFKSFNDTWGHQTGDQVIRYVA 241 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-----KIIENSQINISSGP 214 + P R GGEEFA G S +++ + +R +I++ N G Sbjct: 242 SVIQRCSPAPRVSARYGGEEFAIIFPGESARDSLAVLEAVREEVSSRILKRRSTNEDLGA 301 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 ITISAGIAER E ++++ RAD ALY +K+ GRNR C I Sbjct: 302 ---ITISAGIAERKPGESPASLVERADSALYASKRGGRNRTSCADPI 345 >gi|320161687|ref|YP_004174912.1| hypothetical protein ANT_22860 [Anaerolinea thermophila UNI-1] gi|319995541|dbj|BAJ64312.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1] Length = 362 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 14/209 (6%) Query: 53 IGLTPFYGL-EYILVENLSLVIISITISLLLGYISGSILKELFI----SYNRISQLSRID 107 +G+ F+G+ E +LVE + L T S LL ++ + K+ FI + + + Q++ D Sbjct: 153 VGIFRFWGIAEPLLVEYIRLEARIATTSFLLFILART--KDEFIRTLTTAHAMHQMAYTD 210 Query: 108 CLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 L+ L N +L S ++ +++ DID+FKQIND FGH GD V+ +SD L Sbjct: 211 PLTFLPNRRWLTQTLEQRLSRKKRFTLILVDIDHFKQINDTFGHDTGDAVLREVSDCLHH 270 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 +GR GGEEF A Q A LA LRK +EN ++ + ++ +T S G+ Sbjct: 271 QIRAGDVIGRWGGEEFLILASEEEAQSALQLAQRLRKALENFKLEV----NLSVTASFGV 326 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRN 253 + I +++ RAD ALY AK +GRN Sbjct: 327 TLSQEDDTIFSLLKRADLALYRAKSNGRN 355 >gi|254708574|ref|ZP_05170402.1| GGDEF domain protein [Brucella pinnipedialis M163/99/10] Length = 204 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148 +L S+ + +RID ++GLLN A ++ S E +++ D D+FK IND+FGH Sbjct: 34 QLEKSHVELQARARIDHMTGLLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGH 93 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ Sbjct: 94 GVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPF 153 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 154 HTTEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 201 >gi|239905612|ref|YP_002952351.1| putative signaling protein [Desulfovibrio magneticus RS-1] gi|239795476|dbj|BAH74465.1| putative signaling protein [Desulfovibrio magneticus RS-1] Length = 624 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 10/175 (5%) Query: 92 ELFISYNRISQLSRIDCLSGL------LNHSAFISSLGS-YNEKLSIVFFDIDYFKQIND 144 E I R+ +++ D L+GL L HS+ + + + LSI FDID+FKQ+ND Sbjct: 448 ERKIMEERLKEMATTDSLTGLNNRQHFLEHSSILFEMAKRHKANLSIALFDIDHFKQVND 507 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD V+ LS + F + +GR+GGEEFA + ++EA + + RK++E Sbjct: 508 TWGHEAGDLVLRELSKLALNCFRSSDIIGRIGGEEFAVIMPETDKEEAILASERFRKLVE 567 Query: 205 NSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +++ + ++IT+S GIA+ I+ + +D ALY AK +GRN V C Sbjct: 568 STKFEYEND-LLNITVSIGIAQFDPNTNTTINDLTKISDDALYTAKANGRNMVFC 621 >gi|205352436|ref|YP_002226237.1| hypothetical protein SG1195 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272217|emb|CAR37076.1| predicted phage protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627490|gb|EGE33833.1| putative phage protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 381 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 13/199 (6%) Query: 71 LVIISITISLLLG-YISGSILKELFISYN-------RISQLSRIDCLSGLLNHSAFISSL 122 LV +++T L+ G +I E ++ Y R+ ++ D L+G N + S L Sbjct: 182 LVWLTLTTILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFL 241 Query: 123 GS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178 G E +++ D+DYFK ND++GH GD +A ++ + TP V R GGE Sbjct: 242 GDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVAGVMKRSVRTPADLVARYGGE 301 Query: 179 EFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 EF SS EAA++A ++ + E + + +S S +T+S GI + ++ II Sbjct: 302 EFVVVLPSSSLNEAALVAERIQTNLRETAMPHAASAVSETVTVSMGITLSTAGDTVTGII 361 Query: 238 YRADQALYVAKKSGRNRVV 256 RAD+ALY AK+ GRNR V Sbjct: 362 ARADEALYRAKQQGRNRWV 380 >gi|144897841|emb|CAM74705.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Magnetospirillum gryphiswaldense MSR-1] Length = 556 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 72/188 (38%), Positives = 94/188 (50%), Gaps = 16/188 (8%) Query: 83 GYISGSILKELFISY-----NRISQLSRI---DCLSGLLNH---SAFI-SSLGSYNEK-- 128 G+++ I E IS R+ L + D L+GL NH S F+ +SL S Sbjct: 366 GFLTKPIQPEDLISAVAIRAERMRTLRSLMVRDSLTGLFNHTFMSQFLETSLASARRDDG 425 Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 L V D+D+FKQ+ND +GHP GD+V+ L+ L VGR GGEEFA Sbjct: 426 MLCFVMIDVDHFKQVNDTYGHPAGDQVLVALARLLQQRLRNSDMVGRYGGEEFAVILQDI 485 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 EA+ + +DLR + G T SAGIA K ++ ADQALYVA Sbjct: 486 GTDEASRIVDDLRADFAKVRFTAGDG-DFSCTFSAGIAGYPGKAQADLLLESADQALYVA 544 Query: 248 KKSGRNRV 255 KKSGRN+V Sbjct: 545 KKSGRNQV 552 >gi|227822088|ref|YP_002826059.1| GGDEF family protein [Sinorhizobium fredii NGR234] gi|227341088|gb|ACP25306.1| GGDEF family protein [Sinorhizobium fredii NGR234] Length = 398 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/196 (36%), Positives = 106/196 (54%), Gaps = 19/196 (9%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 +++I++ I++L G ++K++ I R S S +D LSGL N F+ L E Sbjct: 196 AMLIVATGIAML-----GVMVKDI-IDEARAS--SELDALSGLYNRRGFVDRLTPVLETA 247 Query: 130 ------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA- 182 +++ D+D FK +ND +GH GD VI S LV + + RLGGEEFA Sbjct: 248 GADGPGTLILADLDRFKLVNDTYGHHAGDGVIRQFSRVLVELMPSRAVAARLGGEEFAVF 307 Query: 183 -AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 LG S EA +LA+ +R + +++I+ S+ IT S G+A +E + + RAD Sbjct: 308 LPRLGLS--EARVLAHGMRAALASTRID-GLPDSVKITASFGVASIGPRESLEAAMQRAD 364 Query: 242 QALYVAKKSGRNRVVC 257 +ALY AK GRNRV C Sbjct: 365 KALYAAKADGRNRVEC 380 >gi|149376778|ref|ZP_01894535.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter algicola DG893] gi|149358899|gb|EDM47366.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter algicola DG893] Length = 321 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 113/220 (51%), Gaps = 17/220 (7%) Query: 57 PFYGLEYILVENLSLVIIS------ITISLLLGYIS--GSILKELFISYNRISQLSRIDC 108 P G E + +NL++ +S I L++ ++ + + L + ++++LS D Sbjct: 101 PITGTEDFMYQNLTISPLSGPDGQVEKICLMVYDVTDIATSKRALETANEQLAKLSMTDR 160 Query: 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+GLLN + + + + Y ++ FDID+FK +ND +GH GD+VI + + Sbjct: 161 LTGLLNRGTWENLIDAEYERYRRYGHNTCLIMFDIDHFKAVNDTYGHLAGDEVIKYTAKV 220 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + GR GGEEF + + A ++ +R+ I+NS + ++ P I T+S Sbjct: 221 MKDNLRQSDSPGRYGGEEFGIILPETDAEGARVICERIREAIQNSTVQTTAAP-IQYTVS 279 Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 GIA + E + +AD+ALY AK+ GRNRVV F + Sbjct: 280 IGIAPLTDRPENHMQWLQQADEALYAAKEGGRNRVVVFGE 319 >gi|91976934|ref|YP_569593.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91683390|gb|ABE39692.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5] Length = 355 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 9/165 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F + S + LS++ DID+FK NDN+GH GD+V+ + Sbjct: 181 DPLTGLGNRKHFDRVVTEAVRSAAATRLPLSLLMMDIDHFKSFNDNYGHLTGDQVLRLVG 240 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217 L R GGEEFA + ++A ++A+D+R+ + + ++ S I Sbjct: 241 MTLKQTIKNKDIPSRYGGEEFAVVLPNTPLRQALVIADDIRRTVMSKELKKKSTGEILGR 300 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +T+SAG++ ++ +I RAD LY AK++GRNRV+C +D E Sbjct: 301 VTLSAGVSTLKPEDDADALIERADACLYSAKRNGRNRVICETDPE 345 >gi|170728651|ref|YP_001762677.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169813998|gb|ACA88582.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 320 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 29/269 (10%) Query: 7 DFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66 D S WL ++ +ES F++ F S IF + P G + Sbjct: 63 DLPSTWL--KQKMES----VFLLKNRAFISWEQRPYIFK------FKNYRPITGRADFMY 110 Query: 67 ENLSLVIIS------ITISLLLGYISGSILKELFI--SYNRISQLSRIDCLSGLLNHSAF 118 +N++L+ +S IS+++ ++ + L + + R+ LS+ D L+ L N + Sbjct: 111 QNVTLLPLSSLTGQITHISMIVYDVTDVAINRLQLKGANERLEYLSQTDGLTQLHNRRHW 170 Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 + Y ++ S+V FDID FK++NDN+GH +GDKVI +S L Sbjct: 171 QQCMQREFDRHARYGDETSLVMFDIDDFKKVNDNYGHTIGDKVIQHISHLLKQSLRETDC 230 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHK 230 GR GGEEF+ +S +A A LRK IE + + + +I++T+S GI + + Sbjct: 231 AGRYGGEEFSVVLAKTSATDALQFAERLRKKIEETAL-VYEDQTINVTVSIGICDIQDEL 289 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259 E + AD+ALY AK +GRN+ V + Sbjct: 290 ENSGQWLNCADEALYTAKDTGRNKCVIYK 318 >gi|261416036|ref|YP_003249719.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372492|gb|ACX75237.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325560|gb|ADL24761.1| diguanylate cyclase (GGDEF) domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 443 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 94/175 (53%), Gaps = 11/175 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142 L+ L I + + S+ D L+G LN + F L EKL S + FDID+FK++ Sbjct: 266 LRALEIEKSEYEKSSKEDPLTGCLNRAGFGGVLLREQEKLNRTGGPVSFMIFDIDHFKEV 325 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH VGD+V+ L+ + + + R GGEEF + +S Q AA LA LRK Sbjct: 326 NDTYGHLVGDEVLVNLAKLVQGMIRNTDSLVRWGGEEFVILSDDTSIQNAAFLAEKLRKA 385 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IE++ + +T S G+ E E + I RAD+ALY +K++GRNRV Sbjct: 386 IESATLITQQ----QVTCSFGVTEMIPGEDPKSFIARADKALYSSKENGRNRVTV 436 >gi|171058109|ref|YP_001790458.1| diguanylate cyclase [Leptothrix cholodnii SP-6] gi|170775554|gb|ACB33693.1| diguanylate cyclase [Leptothrix cholodnii SP-6] Length = 381 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 9/175 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 + L + R+ QL+ D L+GL N ++L E+ S+ DID+FK+IN Sbjct: 202 ERLAAALLRVEQLAERDELTGLPNRRRMQAALAEERERCSRNGVSFSVAMLDIDHFKRIN 261 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKI 202 D +GHP+GD V+ ++ + P VGR+GGEEF G++ +EA + +R Sbjct: 262 DLYGHPMGDAVLRSVAQLMRTALRKPDLVGRVGGEEFLMILPGAARLEEAKHVVERVRAA 321 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IE + + + + +T S G+A E + ++ RAD+ LY+AK+ GRN+V Sbjct: 322 IEGNDWSATRA-DLQVTASIGVAVGEPGESVESLFDRADRGLYLAKQGGRNQVAA 375 >gi|218515210|ref|ZP_03512050.1| putative sensory box/GGDEF family protein [Rhizobium etli 8C-3] Length = 311 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 99/184 (53%), Gaps = 18/184 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK-----LSIVFFDIDYFKQ 141 + KEL Y RI+ D L+ L N AF L + +N +++ DID FK+ Sbjct: 120 QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKK 175 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GHPVGDK++A ++ + +FV R GGEEFA G++ +E +A +R+ Sbjct: 176 INDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVTAIAERIRR 235 Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +E NS+ ++ GP IT+S GI + E + RAD ALY AK +GRN +V Sbjct: 236 TLETTPFKNSRTRVNYGP---ITVSIGICMASNAEDAGELYSRADIALYGAKNAGRNCIV 292 Query: 257 CFSD 260 + D Sbjct: 293 LYQD 296 >gi|167625792|ref|YP_001676086.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167355814|gb|ABZ78427.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 623 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 104/184 (56%), Gaps = 11/184 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQI 142 L+EL + ++++ +RID L+G+ N ++F I + G + + LSI+ DID FK I Sbjct: 441 LRELNEANQKLTEQTRIDSLTGVKNRASFDRRILAEGRISRRQQAPLSILMLDIDRFKLI 500 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND++GH GD+ + ++DQL + P V R GGEEFA + + A +A +RK Sbjct: 501 NDSYGHLAGDQALRVIADQLKQILKRPTDLVSRFGGEEFAIILPNTDKIGAQQVAETIRK 560 Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +I I G I +T+S G++ +E + ++ +AD+ALY AK GRN+V +S Sbjct: 561 VISKLPI-CWGGNRIRLTVSIGVSSEIITSEEHTTLLLEQADKALYQAKNDGRNQVKLYS 619 Query: 260 DIEN 263 ++ Sbjct: 620 PDQD 623 >gi|119944046|ref|YP_941726.1| diguanylate cyclase [Psychromonas ingrahamii 37] gi|119862650|gb|ABM02127.1| diguanylate cyclase [Psychromonas ingrahamii 37] Length = 611 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 93/173 (53%), Gaps = 9/173 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + +R L+R D L+ +LN AF I Y L+I+ D+D+FK IN Sbjct: 436 EELEQAKDRAELLARTDPLTNMLNRRAFFECGSVEIKRSLRYKSSLAIMMIDLDHFKSIN 495 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 DN+GH GD + +++ L + +GR+GGEEFA + + A LA LR I Sbjct: 496 DNYGHAAGDNALLSVANTLKAMIRNVDIIGRIGGEEFAVIIPHADLEIATELAQRLRLGI 555 Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 E +I I + P + IT G+ E + + RAD+ALY+AK++GRNRV Sbjct: 556 EKVEIIIDNQP-VKITACFGVTSIDIKSESLDEALKRADKALYLAKENGRNRV 607 >gi|94501819|ref|ZP_01308331.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Oceanobacter sp. RED65] gi|94426040|gb|EAT11036.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Oceanobacter sp. RED65] Length = 642 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 67/182 (36%), Positives = 98/182 (53%), Gaps = 13/182 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSI--VFFDIDYFKQI 142 L+EL ++ ++ +S D L+ + N F S + K+SI + DID+FK++ Sbjct: 458 LEELSNAHEKLKNISVTDALTKIHNRYFFDQHWRSEFKRAHRHKMSIALIILDIDHFKKV 517 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 NDNFGHP GD + ++ + + V RLGGEEFA G+ E A +A +R Sbjct: 518 NDNFGHPAGDLCLQKVAQSIRIQANRESDLVCRLGGEEFAVILPGTDEMGAYEVAEKIRH 577 Query: 202 IIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIY-RADQALYVAKKSGRNRVVC 257 IE I+ G +I IT+S GI+ R E + I++ +ADQALY AK +GRNR V Sbjct: 578 TIEKRHISW-EGKTIKITVSIGISAMTPRKSDEKMRNIMFNQADQALYQAKGNGRNRTVI 636 Query: 258 FS 259 F Sbjct: 637 FE 638 >gi|296137258|ref|YP_003644500.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12] gi|295797380|gb|ADG32170.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12] Length = 420 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 R+ L+ D L+G+ N S+ + L ++ LS++ D+DYFK+IND FGH GD+V Sbjct: 250 RRLEHLATFDSLTGIHNRSSILGILERLLQRKAPLSVLLLDLDYFKRINDGFGHAAGDRV 309 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + + F GRLGGEEF G+ E EA +A LR + I ++ G Sbjct: 310 LCRFVQIIEDEKRSRDFFGRLGGEEFLLILDGADEAEAGQIAERLRAAVSAEAIALAEGE 369 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ +T+S G+ + R + + ++ RAD+ALY AK+ GRN VC Sbjct: 370 AVALTVSIGMTQSRPGDQRTADVLVRADRALYRAKQMGRN-CVC 412 >gi|218246860|ref|YP_002372231.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8801] gi|257059902|ref|YP_003137790.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8802] gi|218167338|gb|ACK66075.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8801] gi|256590068|gb|ACV00955.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8802] Length = 317 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 9/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+G+ N F IS + Y+ LS + D+D+FKQIND +GH +GD Sbjct: 142 IKTLATTDPLTGVFNRRFFLEFAQKEISRVHRYDYSLSTLMLDVDHFKQINDTYGHNIGD 201 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ FL+ L+ + + RLGGEEFA + + A LA + +++ S++N+ + Sbjct: 202 EVLKFLTQVLLKIIRKADCLARLGGEEFAILLPQTPLEGAEELARRILQVLRKSELNL-A 260 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G I +T+S G++ + ++ I + RAD+AL+ AK GR+R V + Sbjct: 261 GKIIRLTLSIGVSSYQVSEDTIEESLKRADRALFAAKNQGRDRFVIYP 308 >gi|262165593|ref|ZP_06033330.1| GGDEF family protein [Vibrio mimicus VM223] gi|262025309|gb|EEY43977.1| GGDEF family protein [Vibrio mimicus VM223] Length = 978 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 24/229 (10%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI------------- 95 + + + P++ ++ L ++++++ IS+++ I +E ++ Sbjct: 741 YSYSFTIAPYFWQRKEVIFMLGMLVVALCISVVMWRIRTLKRREWYLVEQVALQTQKLRF 800 Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 + +LS+ D L+GL N AF S + +++SI DID+FKQIND + H Sbjct: 801 QAEKFERLSKEDELTGLANRRAFDVYLKQAFSRVDHPGQQVSIGLLDIDHFKQINDRYSH 860 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD+ I +S QL+ V R GGEEF +G +EA +LR IE Q+ Sbjct: 861 IIGDQAIVAVSQQLLKYVRDKTRVARWGGEEFTILYVGDP-KEAWSYFEELRCTIE--QV 917 Query: 209 NISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + S+ P + +T+S G A+ E +++ AD AL AKK GRNRVV Sbjct: 918 DFSTVAPGLSVTVSVGFADSQQAESYESVLKLADHALLTAKKLGRNRVV 966 >gi|303246080|ref|ZP_07332361.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio fructosovorans JJ] gi|302492476|gb|EFL52347.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio fructosovorans JJ] Length = 466 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 8/166 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++ L+ D L+G N F+ +++ +S + DID+FK IND +GH +G Sbjct: 297 QLNHLATTDALTGANNLHRFLERAEEEIIRSERHDKPVSFLMLDIDHFKNINDTYGHAIG 356 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ LS +F GR+GGEEFAA ++ + A +A LR+I+ +++ Sbjct: 357 DDVLRVLSAACRKLFRKSDVFGRVGGEEFAAILPETTLEAATQVAERLRQILAQLEVDGP 416 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +G +I T+S GI ER + + +S ++ AD++LY AK SGRN+VV Sbjct: 417 NG-NISFTVSIGIVERKNGQNLSDVMRFADKSLYEAKNSGRNKVVA 461 >gi|213969573|ref|ZP_03397709.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] gi|301383348|ref|ZP_07231766.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13] gi|302059380|ref|ZP_07250921.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40] gi|302134509|ref|ZP_07260499.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925669|gb|EEB59228.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] Length = 358 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 114/214 (53%), Gaps = 10/214 (4%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L P L+ +++ + + + + + +G+++ + +L+ N + LSR D L+GLLN Sbjct: 135 LNPVVNLDGNMMQIYACLPVLVIYPIFIGWMNHQVTLKLWEHRNILRTLSRTDSLTGLLN 194 Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 H A+ L + +++ I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 195 HGAWKDLLDLEFAKSQNQHQECVIALIDIDHFKIINDTYGHLMGDTVLQNISEALIENLR 254 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 +GR GG+EF +S +A + +R I+ ++ S + ++S GIA Sbjct: 255 DSDLIGRCGGDEFCVILPNTSLLQAREILERMRLAID--ELTYSLHCDLKASLSVGIAAY 312 Query: 228 CHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + P S+ ++ AD+ALY+AK +GRNRVV D Sbjct: 313 SPELPDASSWLHEADKALYLAKSTGRNRVVSAED 346 >gi|28868822|ref|NP_791441.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852061|gb|AAO55136.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 358 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 114/214 (53%), Gaps = 10/214 (4%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L P L+ +++ + + + + + +G+++ + +L+ N + LSR D L+GLLN Sbjct: 135 LNPVVNLDGNMMQIYACLPVLVIYPIFIGWMNHQVTLKLWEHRNILRTLSRTDSLTGLLN 194 Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 H A+ L + +++ I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 195 HGAWKDLLDLEFAKSQNQHQECVIALIDIDHFKIINDTYGHLMGDTVLQNISEALIENLR 254 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 +GR GG+EF +S +A + +R I+ ++ S + ++S GIA Sbjct: 255 DSDLIGRCGGDEFCVILPNTSLLQAREILERMRLAID--ELTYSLHCDLKASLSVGIAAY 312 Query: 228 CHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + P S+ ++ AD+ALY+AK +GRNRVV D Sbjct: 313 SPELPDASSWLHEADKALYLAKSTGRNRVVSAED 346 >gi|294139118|ref|YP_003555096.1| sensory box/GGDEF family protein [Shewanella violacea DSS12] gi|293325587|dbj|BAJ00318.1| sensory box/GGDEF family protein [Shewanella violacea DSS12] Length = 314 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 17/219 (7%) Query: 57 PFYGLEYILVENLSLVIIS------ITISLLLGYISGSILKELFISY--NRISQLSRIDC 108 P G + +N++L+ +S IS+++ ++ + +L + R+ LS+ D Sbjct: 94 PITGRADFMYQNVTLLPLSSLTGQITHISMIVYDVTDVAINKLQLKSVNERLEHLSQTDG 153 Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L N + Y ++ S+V FDID+FK++ND +GH GDKVI +S Sbjct: 154 LTQLHNRRYWQICMQKEFDRHARYGDETSLVMFDIDHFKKVNDTYGHMAGDKVIQHISHL 213 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L GR GGEEFA + +S ++A A LR IE +++ + G I +T+S Sbjct: 214 LSQSLRETDCAGRYGGEEFAVVLVKTSAEDALKFAERLRNKIETTEL-VYEGKPIKVTVS 272 Query: 222 AGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259 GI++ + S + ADQALY AK++GRN+ + + Sbjct: 273 MGISDLQDRVGNSGQWLSFADQALYKAKEAGRNKCLIYK 311 >gi|270261967|ref|ZP_06190239.1| diguanylate cyclase [Serratia odorifera 4Rx13] gi|270043843|gb|EFA16935.1| diguanylate cyclase [Serratia odorifera 4Rx13] Length = 477 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 19/246 (7%) Query: 24 PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL---VIISITISL 80 P +++ ++ FS+F V+ + I++ + L GL I V+ +L V + + ++L Sbjct: 224 PVPILLWLAMSFSLFTTLVVVL--IYVLWCHLAIDLGLIAINVDMKALQNTVSMRLGVAL 281 Query: 81 L-LGYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAFISS----LGSYNEKLSIV 132 L LG I+ I F + QL + D L+ +L +AF+ L E++ I+ Sbjct: 282 LALGPIA--IASMNFARNALLRQLEHVANHDALTHVLTRNAFMQRGSRLLTQKGEQVCIM 339 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DIDYFK IND FGH GD + + + GR+GGEEFA AL +++A Sbjct: 340 MLDIDYFKSINDRFGHSGGDAALISFTRAIAGDLRDSDLFGRMGGEEFAIVALIERQEDA 399 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKK 249 LA LR+ +E I + +G + IT+S G+ C ++ + ++ AD A+Y AK Sbjct: 400 VYLAERLRRRVEIESIAMPAGNHLQITVSIGMVT-CIGGTEQNLDNLLKIADMAVYKAKN 458 Query: 250 SGRNRV 255 SGRNRV Sbjct: 459 SGRNRV 464 >gi|190892067|ref|YP_001978609.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190697346|gb|ACE91431.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 355 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 99/184 (53%), Gaps = 18/184 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK-----LSIVFFDIDYFKQ 141 + KEL Y RI+ D L+ L N AF L + +N +++ DID FK+ Sbjct: 164 QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKK 219 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GHPVGDK++A ++ + +FV R GGEEFA G++ +E +A +R+ Sbjct: 220 INDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVTAIAERIRR 279 Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +E NS+ ++ GP IT+S GI + E + RAD ALY AK +GRN +V Sbjct: 280 TLETTPFKNSRTRVNYGP---ITVSIGICMASNAEDAGELYSRADIALYGAKDAGRNCIV 336 Query: 257 CFSD 260 + D Sbjct: 337 LYQD 340 >gi|168467926|ref|ZP_02701763.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|198241964|ref|YP_002215227.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|195628978|gb|EDX48374.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197936480|gb|ACH73813.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 353 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 13/199 (6%) Query: 71 LVIISITISLLLG-YISGSILKELFISYN-------RISQLSRIDCLSGLLNHSAFISSL 122 LV +++T L+ G +I E ++ Y R+ ++ D L+G N + S L Sbjct: 154 LVWLTLTTILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFL 213 Query: 123 GS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178 G E +++ D+DYFK ND++GH GD +A ++ + TP V R GGE Sbjct: 214 GDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVAGVMKRSVRTPADLVARYGGE 273 Query: 179 EFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 EF SS EAA++A ++ + E + + +S S +T+S GI + ++ II Sbjct: 274 EFVVVLPSSSLNEAALVAERIQTNLRETAMPHAASAVSETVTVSMGITLSTAGDTVTGII 333 Query: 238 YRADQALYVAKKSGRNRVV 256 RAD+ALY AK+ GRNR V Sbjct: 334 ARADEALYRAKQQGRNRWV 352 >gi|146309930|ref|YP_001175004.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638] gi|145316806|gb|ABP58953.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638] Length = 468 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 11/160 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---------LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+G N SA + L + E+ ++ FD+DYFKQIND +GH VGD + + Sbjct: 304 DDLTGCFNRSAILQKLQAATEQHQPSETGSPFCVLMFDLDYFKQINDEWGHQVGDAALVY 363 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 D+L + +GR+GGEEF + Q A L+ LR + + + + S+ Sbjct: 364 FCDRLRELSPRLSALGRVGGEEFLLLLTQADSQAAMALSTLLRSSLFDRPMRVEDK-SLV 422 Query: 218 ITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256 ++ SAG+ E CH + S+++ RAD+ALY AK+SGR + V Sbjct: 423 LSFSAGVVEVCHGQRDTSSLLTRADKALYDAKRSGRGKTV 462 >gi|56461594|ref|YP_156875.1| intracellular signaling protein [Idiomarina loihiensis L2TR] gi|56180604|gb|AAV83326.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Idiomarina loihiensis L2TR] Length = 462 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 13/210 (6%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 PF LE +V + + ++ I +L + ++ ++ D L+GL N S Sbjct: 257 PFTELEIEMVRMMGTALETVIAEQ-------KIRSDLIRQRDDMALIAYTDALTGLKNRS 309 Query: 117 AFI----SSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 A + SL N V D D+FK IND +GH +GDKV+ S+ + + Sbjct: 310 AGMEILEQSLVRQNGGRGFVVSVIDFDHFKTINDTYGHDIGDKVLIAGSEAMSAAVRSSD 369 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 V R+GGEEF + + A+ + +R +E + + + SG I+ T+S G +E Sbjct: 370 SVVRVGGEEFMVVLAYADHESASQVLERVRAAVEETVVTLDSGEVINPTVSVGASESHPD 429 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +S+I RADQALY AK+ GRNRVV S+ Sbjct: 430 DDVSSIYRRADQALYKAKREGRNRVVWASE 459 >gi|327190385|gb|EGE57482.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 392 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 7/192 (3%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126 E+LSL + I +G +S ++ + + +R+ ++ D L+GLLN A G+ Sbjct: 187 EDLSLAV-CIAGMTGIGALSLALHQWRLAARHRLEAIT--DPLTGLLNRRAVFDQYGTRP 243 Query: 127 EKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 ++ ++ FDID+FK +ND +GH GD+VI +++L RLGGEEFA Sbjct: 244 MGMTTAVIVFDIDHFKSVNDRYGHAAGDRVIMVFAEELQAHCSAGDTAARLGGEEFALVL 303 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243 A ++A +R+ E +I+I G + T+S G+A R T++ AD+A Sbjct: 304 KEIMPGRAELVAERIRRAFEAREIDI-DGQMLRCTVSVGVAPGRSQMPDFDTMLSAADKA 362 Query: 244 LYVAKKSGRNRV 255 LY AK+ GRNRV Sbjct: 363 LYAAKRGGRNRV 374 >gi|332529270|ref|ZP_08405233.1| response regulator PleD [Hylemonella gracilis ATCC 19624] gi|332041280|gb|EGI77643.1| response regulator PleD [Hylemonella gracilis ATCC 19624] Length = 384 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 12/160 (7%) Query: 107 DCLSGLLNHSAFISSL------GSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 D L+GL N S+L G N++ LS++ D+D+FK++ND GH VGD+++ Sbjct: 224 DALTGLANRRLLDSTLSSRWQVGGLNDRRERPLSVLMLDLDHFKRVNDTHGHDVGDQILK 283 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + + P R GGEEF G+ +A ++A +R I + + + + P + Sbjct: 284 AFAARTSQQLRKPDLFARYGGEEFTVLLPGTDAPKALVIAERVRAAI--AGMPLIAEPPV 341 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IT+S G+A+R E ++ RAD ALY AK+ GRNRV+ Sbjct: 342 PITVSIGVAQRKPNESTEALLARADVALYAAKQGGRNRVM 381 >gi|192362269|ref|YP_001982526.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] gi|190688434|gb|ACE86112.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] Length = 322 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 85/170 (50%), Gaps = 9/170 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ LSR D L+ L N + Y S++ DID+FK+INDN+GH VG Sbjct: 154 QLQNLSRTDHLTSLFNRGYWELRLIQEFKRYDRYESPSSLIMLDIDHFKKINDNYGHTVG 213 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ I +S + GR GGEEF ++ A ++A LR IIE + + Sbjct: 214 DEAIRCVSRVIKEQVRDLDIAGRYGGEEFGIILTSTNGDGACVIAERLRSIIEKQTV-YA 272 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G IH TIS G+AE H I +AD ALY +K+SGRNR +D Sbjct: 273 EGHEIHFTISLGVAELNDHMHDHRQWIEKADHALYKSKESGRNRCTLSAD 322 >gi|156742710|ref|YP_001432839.1| diguanylate cyclase [Roseiflexus castenholzii DSM 13941] gi|156234038|gb|ABU58821.1| diguanylate cyclase [Roseiflexus castenholzii DSM 13941] Length = 380 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 11/179 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + L Y + ++ D L+GL N L Y ++ + FDID+FKQ+N Sbjct: 198 ERLRTGYELMIHMAYTDTLTGLPNRRRLYEELCRLIGMADRYGQEFCVCLFDIDHFKQLN 257 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH VGD+V+ ++ + GR GGEEFA +S +A + + +R + Sbjct: 258 DQHGHLVGDQVLCAIAQTALPHLRAVDHFGRWGGEEFAILLPQTSLSDAQMALDRVRMAL 317 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + IN++ P+I T S G+AE + +I++RADQ++Y+AK +GRNR+V D+E Sbjct: 318 QA--INLADVPTI--TASFGVAEYLPGDTSESILHRADQSMYLAKTTGRNRIVVDGDVE 372 >gi|88857866|ref|ZP_01132508.1| hypothetical protein PTD2_10789 [Pseudoalteromonas tunicata D2] gi|88819483|gb|EAR29296.1| hypothetical protein PTD2_10789 [Pseudoalteromonas tunicata D2] Length = 324 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 97/183 (53%), Gaps = 17/183 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIN 143 KEL + +++ LSRID L+GL N + SL ++L ++ D+D+FK+IN Sbjct: 143 KELEEANHKLESLSRIDRLTGLYNRGFWEESLKKEAKRLQRNEGQSCLLMLDVDHFKRIN 202 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH GD + ++D L +GR GGEEFA + + + + A +RKI+ Sbjct: 203 DEFGHSGGDAALRHIADVLKKTLRESDLIGRFGGEEFAVTLVDTDVEGGKVFAERVRKIL 262 Query: 204 ENSQINISSGPSIHITISAGIAER-----CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S I I I +TIS G+A H++ I+ AD+ALY +K++GRNRV + Sbjct: 263 AESTI-IFDNNQIKLTISLGLAPYKKSYLQHEQWIAD----ADKALYYSKENGRNRVTVY 317 Query: 259 SDI 261 I Sbjct: 318 DAI 320 >gi|289208876|ref|YP_003460942.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp. K90mix] gi|288944507|gb|ADC72206.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp. K90mix] Length = 791 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 82/150 (54%), Gaps = 8/150 (5%) Query: 112 LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 LL+ A + Y S++ DID+FK+IND FGH VGD+V+ FL L Sbjct: 649 LLDQEARRAQ--RYAHPCSLLLLDIDHFKRINDTFGHEVGDEVLRFLVHALKGRLREADV 706 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK 230 +GR GGEEF G+ + +A LR+ Q+ ++ P + +TIS G+AE Sbjct: 707 LGRWGGEEFVVLLPGTDAERGQHVAEQLRE-----QVTATAFPCVGLVTISLGVAECRPG 761 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 E I + RAD+A+YVAKK GRNRVV D Sbjct: 762 ESIRDWVKRADEAMYVAKKGGRNRVVRLDD 791 >gi|83312550|ref|YP_422814.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947391|dbj|BAE52255.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Magnetospirillum magneticum AMB-1] Length = 477 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 9/169 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +++ L+ D L+G LN AF + Y +S++ DID+FKQ+ND GH V Sbjct: 309 SQLRHLATTDELTGCLNRRAFFVAAEQELERASRYGNAVSVLMIDIDHFKQVNDRHGHAV 368 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDK + + + GRLGGEEFAA ++ A ++A LR+ +E + + Sbjct: 369 GDKALKAATAAIRANLREIDSFGRLGGEEFAAMLPETTLAGALLVAERLRQAVEAIALPL 428 Query: 211 SSG-PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257 P + +T S G+AER E + ++ RAD ALY AK GRNRV+ Sbjct: 429 GDDQPPLRLTTSLGVAERQPGEVAVDQVLARADTALYRAKAEGRNRVLA 477 >gi|56475890|ref|YP_157479.1| hypothetical protein ebA864 [Aromatoleum aromaticum EbN1] gi|56311933|emb|CAI06578.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 313 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/175 (38%), Positives = 91/175 (52%), Gaps = 20/175 (11%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QL+ D L+G+LN F I L+++ DID+FK+IND FGH VGD Sbjct: 144 LRQLATTDPLTGILNRRRFTELTTQEIHRAHRLRHPLTLIMLDIDWFKRINDAFGHTVGD 203 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-----AALGSSEQEAAILANDLRKIIENSQ 207 +VI L+ +GRLGGEEFA A GS E +A LR+ +E Q Sbjct: 204 RVIQSLASACASELREIDILGRLGGEEFAVVLPELGASGSLE-----VAERLRQKVEGLQ 258 Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I ++ G + T S G+A + + P T++ RAD ALY AK+ GRN V SD Sbjct: 259 ITLNDGRIVRFTCSLGVAVLKDTDQSP-DTLLVRADNALYRAKRDGRNCVRAASD 312 >gi|134300533|ref|YP_001114029.1| diguanylate cyclase [Desulfotomaculum reducens MI-1] gi|134053233|gb|ABO51204.1| diguanylate cyclase [Desulfotomaculum reducens MI-1] Length = 417 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 106/203 (52%), Gaps = 17/203 (8%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128 ++VI+S I +LLG I LF + +S+ +D L+ L N L S + Sbjct: 217 NIVIMSFGIIVLLGGII------LFFASKILSKPLYMDELTKLFNREYMKIRLESEIRRA 270 Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 LS + D+DYFK IND FGH GD ++ +S+ + V R GGEE A Sbjct: 271 RRNKLPLSFLMLDLDYFKSINDCFGHQTGDLILKKISELICVSLREEDLAFRYGGEEIAI 330 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRAD 241 + EA I+A LR++IE + + ++ IH+TIS G+AE K+ T+I +AD Sbjct: 331 LLPETGLYEAKIVAERLRQVIETNSLYVNHYEEPIHVTISIGLAELAAKDTQETLIKKAD 390 Query: 242 QALYVAKKSGRNRVVCFSDIENN 264 ALY+AKK GRN C+ IE + Sbjct: 391 DALYLAKKKGRN---CYQCIEES 410 >gi|170727199|ref|YP_001761225.1| response regulator receiver modulated diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169812546|gb|ACA87130.1| response regulator receiver modulated diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 415 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 13/174 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ + + +D L+G+ N F + + L++ DID+FK++ND +GH + Sbjct: 247 RKLWEQANLDYLTGVYNRRYFFNLFEEQLQQIEQKKTSLTLALLDIDFFKKVNDTYGHDI 306 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ + +L FG V R GGEEF A G +E + L + R +E I Sbjct: 307 GDEVLVEFAARLKHFFGQHFTVARFGGEEFTVAFRGLNEDKVFSLMDKFRAQLEVEAIQT 366 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 S GP I++T+S GIA E + ++ RAD+ALY AK+ GRN +VC IE N Sbjct: 367 SQGP-INVTVSTGIAG-LSDESLDNLLQRADKALYDAKELGRN-LVC---IEGN 414 >gi|227112979|ref|ZP_03826635.1| hypothetical protein PcarbP_08458 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 490 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/166 (40%), Positives = 90/166 (54%), Gaps = 8/166 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVG 151 R+ Q++ D L+GL+N AF LG+ N + LSI+ DID+FK+IND +GH VG Sbjct: 324 RLEQMATTDKLTGLMNRQAFDYLFRRLGTKNALQHKSLSIILIDIDHFKKINDKYGHNVG 383 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ +S L + R GGEEF A A LR+ IE + I Sbjct: 384 DLVLKEISAILSANTRSSDQSCRWGGEEFVILLDDCDINAAQQRAEALRQSIEITHIPYR 443 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G I +T S G+AE E ++T+I RAD ALY AK+ GRN+VV Sbjct: 444 EGI-IQVTASCGVAEYRAGETLNTLINRADIALYQAKQQGRNQVVS 488 >gi|119774894|ref|YP_927634.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119767394|gb|ABL99964.1| diguanylate cyclase [Shewanella amazonensis SB2B] Length = 355 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/180 (36%), Positives = 91/180 (50%), Gaps = 13/180 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDN 145 L L +S +S D L+GL N AF S L K S++ DID+FKQ ND Sbjct: 180 LNHLRAEITELSVISLTDKLTGLNNRRAFESRLAQEFLPSTPKCSLLVIDIDHFKQFNDT 239 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GDKV+ +++ L V R GGEEF +S ++AA +A LR I N Sbjct: 240 WGHNAGDKVLVYVAQNLKQAVKGEDLVARYGGEEFVIVLKDTSAEDAANIAEKLRDRIAN 299 Query: 206 SQI-----NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ N+ G +++S G+A+ E RAD ALY AK +GRNR VC +D Sbjct: 300 KKLTLKKDNLDLG---KVSVSIGVAKAYANETPEQFFERADGALYRAKGTGRNR-VCLAD 355 >gi|114776533|ref|ZP_01451578.1| diguanylate cyclase (GGDEF domain) [Mariprofundus ferrooxydans PV-1] gi|114553363|gb|EAU55761.1| diguanylate cyclase (GGDEF domain) [Mariprofundus ferrooxydans PV-1] Length = 767 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 13/165 (7%) Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +S D LSGL N +A +S+ Y +S++ DID+FK++ND FGH VGD V+ Sbjct: 607 ISNTDKLSGLYNRVKMDSVLTAQKASVDRYQNNVSLIMIDIDFFKEVNDTFGHAVGDTVL 666 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGP 214 LSD + ++GR GGEEF + +A ILA L RK+ + + + + Sbjct: 667 ITLSDIMKNNVRATDYLGRWGGEEFLIVCPNTGLTDAGILAEKLVRKVSQQAFDQVGT-- 724 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +TISAG+A + I + + D+ALY +K+SGRNRV F Sbjct: 725 ---VTISAGVASFSKESTIEDSLLQVDKALYQSKQSGRNRVTIFQ 766 >gi|27367767|ref|NP_763294.1| putative diguanylate cyclase [Vibrio vulnificus CMCP6] gi|27359340|gb|AAO08284.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain [Vibrio vulnificus CMCP6] Length = 357 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 12/192 (6%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130 + L +++ + K I N++ +L+ ID L+G LN AF+ + Y+ + Sbjct: 167 LETLANWVAAQVHKHQQI--NKMIELAHIDPLTGALNRRAFVEATYFINDKPRHYDHHTA 224 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D FK+IND FGHP GDKV+ ++ L + + R GGEEFA + + Sbjct: 225 LLMIDLDKFKEINDQFGHPAGDKVLMQIAATLKKQIRSDDLLARFGGEEFAILLHHVNAE 284 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249 EA LA LR +E I I T+S GIA + ++ AD ALYVAK+ Sbjct: 285 EAMTLAETLRVTVEQLTIEHHQH-RIQCTVSIGIALPSSPNQGFEELMQLADNALYVAKR 343 Query: 250 SGRNRVVCFSDI 261 SGRN+++ SD+ Sbjct: 344 SGRNQII-LSDM 354 >gi|325282992|ref|YP_004255533.1| diguanylate cyclase [Deinococcus proteolyticus MRP] gi|324314801|gb|ADY25916.1| diguanylate cyclase [Deinococcus proteolyticus MRP] Length = 558 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 10/164 (6%) Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+R D L+G+ N + L + + L ++ D+D+FK+INDN H VGD+V+ Sbjct: 383 LARRDSLTGITNRRGADEALPGLLHQLRAPTQSLHLMLIDLDHFKRINDNHSHAVGDRVL 442 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L+ L V G R GGEEF A G+ +EA +A +R + Q+ + P Sbjct: 443 QSLAKLLPEVAGLDALSARYGGEEFLVALSGARNEEARRVAEQIR--LRTMQL-VWDVPG 499 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +T+S G+ + + ++I RAD+ALY AK SGRNRVV + Sbjct: 500 LRVTVSVGLTRAVLHDTVGSLIARADEALYRAKHSGRNRVVELA 543 >gi|300856263|ref|YP_003781247.1| membrane associated GGDEF domain-containing protein [Clostridium ljungdahlii DSM 13528] gi|300436378|gb|ADK16145.1| membrane associated GGDEF domain containing protein [Clostridium ljungdahlii DSM 13528] Length = 374 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/181 (37%), Positives = 95/181 (52%), Gaps = 10/181 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEK---LSIVFFDIDYFK 140 L + F Y + + ID L+GL N F SL EK LS++ DIDYFK Sbjct: 182 LTKTFEVYKKYRTEASIDFLTGLNNVRWFNKSLNRISIAMEKKEKIKCLSLILLDIDYFK 241 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND +GH GD V+ L++ L V R GGEEF+ L +A +A +R Sbjct: 242 KINDKYGHSSGDIVLKNLANILNDTCRAFNIVSRNGGEEFSVLLLNYPAADAVQVAERIR 301 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 K IE +IS G ++HITIS+G++ + I ++ D ALY AK +GRN+VV + Sbjct: 302 KNIEAYPFHISDGITVHITISSGVSTYPSTTDNIDNLLDDTDTALYEAKNTGRNKVVLYK 361 Query: 260 D 260 + Sbjct: 362 E 362 >gi|224827064|ref|ZP_03700161.1| diguanylate cyclase with GAF sensor [Lutiella nitroferrum 2002] gi|224600730|gb|EEG06916.1| diguanylate cyclase with GAF sensor [Lutiella nitroferrum 2002] Length = 631 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 106/218 (48%), Gaps = 15/218 (6%) Query: 52 YIGLTPFYGLEYILVENLSLV-----IISITISLLLGYISGSILKELFISYNRISQLSRI 106 YIG + G E N S + LL ++ +I ++ IS R ++ Sbjct: 412 YIGTPTWVGGELYGTVNFSSTKPYGRTFDRSXXLLGRWVGIAIAEDRSISTLR--SIATT 469 Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G++ F Y +LS+ D+DYFK+IND+FGH GD+ + ++ Sbjct: 470 DELTGVMRRGHFTEIAEKEFGRTKRYGGRLSMFLIDLDYFKRINDSFGHYGGDETLKRVA 529 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V + +GRLGGEEFA + E EA +A LR +E S I SG I +T Sbjct: 530 IVFQQVLRSSDILGRLGGEEFAVLLPNTPESEAKEVAERLRHEVEESTIQALSG-EIRVT 588 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IS G+AE ++ + I R D ALY AK+ GRN VV Sbjct: 589 ISIGVAELAAEDDFTAIYNRCDAALYEAKRRGRNCVVA 626 >gi|320158046|ref|YP_004190424.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain [Vibrio vulnificus MO6-24/O] gi|319933358|gb|ADV88221.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain [Vibrio vulnificus MO6-24/O] Length = 357 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 12/192 (6%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130 + L +++ + K I N++ +L+ ID L+G LN AF+ + Y+ + Sbjct: 167 LETLANWVAAQVHKHQQI--NKMIELAHIDPLTGALNRRAFVEATYFINDKPRHYDHHTA 224 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D FK+IND FGHP GDKV+ ++ L + + R GGEEFA + + Sbjct: 225 LLMIDLDKFKEINDQFGHPAGDKVLMQIAATLKKQIRSDDLLARFGGEEFAILLHHVNAE 284 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249 EA LA LR +E I I T+S GIA + ++ AD ALYVAK+ Sbjct: 285 EAMTLAETLRVTVEQLTIEHHQH-RIQCTVSIGIALPSSPNQGFEELMQLADNALYVAKR 343 Query: 250 SGRNRVVCFSDI 261 SGRN+++ SD+ Sbjct: 344 SGRNQII-LSDM 354 >gi|323699094|ref|ZP_08111006.1| diguanylate cyclase [Desulfovibrio sp. ND132] gi|323459026|gb|EGB14891.1| diguanylate cyclase [Desulfovibrio desulfuricans ND132] Length = 257 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 112/220 (50%), Gaps = 18/220 (8%) Query: 48 IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107 + L + L P + S+++++I + + + ++ L + ++I+ L+ D Sbjct: 30 LALLPVSLLPARSWAVAALLTGSILVLAIAL-----FCASRFMRLLEGANDKIAALTTHD 84 Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+GL N + F IS G Y +LS+V D+D FK +ND FGHP+GD+ +A ++ Sbjct: 85 DLTGLPNRNWFFDRLDQEISRAGRYGNRLSLVMVDLDRFKGVNDAFGHPLGDQTLAEVAR 144 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L R GGEEF + +AA A LR ++E + I++ GP + +TI Sbjct: 145 LLAANIRASDVAARYGGEEFMIILPETCAGQAARAAEKLRMVVEVNDISL-EGPEVKVTI 203 Query: 221 SAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRV 255 S G+A+ P ++ AD+A++ AK +GRN+V Sbjct: 204 SCGVADLASVRPGRGTLRDALVAAADRAMHRAKLNGRNQV 243 >gi|205374857|ref|ZP_03227650.1| diguanylate cyclase [Bacillus coahuilensis m4-4] Length = 466 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 9/171 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +++ + D L+G+ N AF + +I+ DIDYFK++ND +GH V Sbjct: 291 SQLEHFAYYDELTGIYNRRAFFQYCEEAFQESKEQDTPFTIILMDIDYFKKVNDTYGHSV 350 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++ R GGEEF G +E+E A LA LR +E I+ Sbjct: 351 GDQVLEQVAKVCQSQLHGHELFARYGGEEFVLGVKGYTEEEGAALAEQLRSEVEALTIHT 410 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G I +T+S G+A + E + I+ ADQALY AK++GRNRV + + Sbjct: 411 PDG-KITVTLSLGVAALTKEDEALYQILNHADQALYRAKEAGRNRVCVYQN 460 >gi|149182640|ref|ZP_01861109.1| hypothetical protein BSG1_13246 [Bacillus sp. SG-1] gi|148849663|gb|EDL63844.1| hypothetical protein BSG1_13246 [Bacillus sp. SG-1] Length = 364 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/169 (41%), Positives = 89/169 (52%), Gaps = 8/169 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 YN QLS D L+ L NH F + L +EK+S+ D+DYFK ND FGHP GD Sbjct: 186 YNDFKQLSIKDGLTNLYNHRFFQQKLDELLKSDEKVSLFLLDLDYFKIYNDKFGHPQGDT 245 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ +SD LV FV R GGEEFA ++A L +R I + S Sbjct: 246 LLREVSDLLVECTPEDAFVCRYGGEEFAVILPEMDIKDAKELGEKVRTSIYTKEFFGSED 305 Query: 214 -PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259 P HIT+S GI+ H EP+ +I AD ALY AKK+ RN+VV S Sbjct: 306 MPFKHITVSLGISSN-HTEPVPKGKLIKAADLALYEAKKT-RNKVVMSS 352 >gi|294341557|emb|CAZ89974.1| hypothetical protein; putative PAS and GGDEF domains [Thiomonas sp. 3As] Length = 420 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R+ L+ D L+G+ N S+ + L LS++ D+DYFK+IND FGH GD+V Sbjct: 250 RRLKHLATFDSLTGIHNRSSILGILERLLQRRPPLSVLLLDLDYFKRINDGFGHAAGDRV 309 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + + F GRLGGEEF G+ E EA +A LR + I ++ G Sbjct: 310 LCRFVQIIEGEKRSRDFFGRLGGEEFLLILDGADEAEAGQIAERLRAAVSAEAIALAEGE 369 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ +TIS G+ + R + ++ RAD+ALY AK+ GRN VC Sbjct: 370 AVALTISFGMTQSRSGDTRTADVLVRADRALYRAKQMGRN-CVC 412 >gi|262274845|ref|ZP_06052656.1| GGDEF family protein [Grimontia hollisae CIP 101886] gi|262221408|gb|EEY72722.1| GGDEF family protein [Grimontia hollisae CIP 101886] Length = 557 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 94/178 (52%), Gaps = 13/178 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + +S + D L+GLLNHS +S + + +S V DID+FK IND +GHP Sbjct: 374 FRALSAMMDRDSLTGLLNHSNLKMALERELSRACRHKKPISFVMIDIDHFKSINDQYGHP 433 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGDKVI ++ L F R GGEEFA + A L ++ R S+ Sbjct: 434 VGDKVIKGVARLLNYRFRKTDTSARYGGEEFALILPDTPADIALRLIDEFRNTF--SKTP 491 Query: 210 ISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 S+GP + + T+SAGIA + + +I AD +LY+AKK GRNRVV ++ TC Sbjct: 492 FSNGPETFYATLSAGIATFPEFDTVEALIEAADSSLYLAKKQGRNRVVTHVEL---TC 546 >gi|325568972|ref|ZP_08145265.1| ABC superfamily ATP binding cassette transporter, binding protein [Enterococcus casseliflavus ATCC 12755] gi|325158010|gb|EGC70166.1| ABC superfamily ATP binding cassette transporter, binding protein [Enterococcus casseliflavus ATCC 12755] Length = 350 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 37/213 (17%) Query: 76 ITISLLLG-YISGSILKE--LFISY------------------NRISQLSRIDCLSGLLN 114 I IS L G Y++G I K ++I Y RI L +ID L+ L N Sbjct: 145 IAISFLFGFYLTGDIQKTTLIYIVYGILAYTLAFFLYSIVNDMQRILALVKIDDLTQLNN 204 Query: 115 HSAFISS---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT--- 168 F L + LSI DID+FK ND +GH GD ++ ++ +F T Sbjct: 205 FRKFQDDRQRLDTTEVDLSIALIDIDHFKNYNDRYGHRAGDVIL----QEIARIFSTYCT 260 Query: 169 ---PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 P++ R+GGEEFA G + Q AA L ++K I +I + +G S+ IT+S GIA Sbjct: 261 ASNPVY--RIGGEEFAILIQGDA-QAAAYLLEKIQKRIRYQEIILDAGDSVSITLSIGIA 317 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +R E + RADQALY AK+SGR+++ + Sbjct: 318 QRQRGELLQQTQERADQALYRAKRSGRDQLCLY 350 >gi|114570365|ref|YP_757045.1| diguanylate cyclase [Maricaulis maris MCS10] gi|114340827|gb|ABI66107.1| diguanylate cyclase [Maricaulis maris MCS10] Length = 379 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 10/180 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 K IS + + D L+G N +A L + ++ ++V FD+D+FK++N Sbjct: 191 KAAEISMAHFRERAATDALTGAANRAAIDQILAAETDRHRETGIPFAVVVFDLDHFKRVN 250 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH GD+V+ + T +GR+GGEEF G S Q+A ++A +RK+I Sbjct: 251 DTFGHLAGDRVLIETVRVVKQALRTSDMLGRIGGEEFVVVLPGVSGQQARLMAERMRKMI 310 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV---VCFSD 260 I + S+ T S G+ E + ++ RAD+ LY AK+ GRNRV +C SD Sbjct: 311 AAISIQVDGRGSVSPTASFGVTECDVNASATDLLARADEYLYRAKRGGRNRVEPELCSSD 370 >gi|145298252|ref|YP_001141093.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851024|gb|ABO89345.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 380 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 16/226 (7%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93 F+ ++ F + L ++ YGL +V++L L+ + + ++ + + L Sbjct: 164 FYGRWVQPGAFYRPLLLSWL----VYGLLLFMVQHL-LMRDRLRKAREARQVAEARSQSL 218 Query: 94 FISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R + +R D L+G LN + ++ LG + LS ++ DID+FK +ND GHPV Sbjct: 219 CEQTLRTEEEARYDPLTGALNRFGGNKLLAELG--DMPLSFIYIDIDHFKLVNDGHGHPV 276 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ + +++ + + R GGEEF L + A LA LR + + Sbjct: 277 GDEVLKHMVSEVLRHCDSLCRLVRWGGEEFVLVCLHYEQARAKALAERLRAAL----VAY 332 Query: 211 SSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P ++ IT S G+AER +P+ ++ RAD+ALY AKK GRNRV Sbjct: 333 PHWPLALSITASFGVAER-RGDPLEQVLKRADEALYQAKKRGRNRV 377 >gi|89093074|ref|ZP_01166025.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92] gi|89082724|gb|EAR61945.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92] Length = 747 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 91/167 (54%), Gaps = 12/167 (7%) Query: 95 ISYNRISQ-LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146 +SYNR+ Q ++ D L+G+ + S + S+ N LS+VFFDID FKQIND + Sbjct: 580 LSYNRMLQTIAEKDALTGICSRHKLRSEMDSFVDLANRHNWNLSMVFFDIDDFKQINDQY 639 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD V+ LS + + GR GGEEF L + ++A +A+ R IEN+ Sbjct: 640 GHASGDIVLVELSKLVSKMSRKTDRFGRWGGEEFLFIMLETDFEDARKIADKFRDKIENA 699 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ + IT S G+A+ E + + RAD ALY AK +G+N Sbjct: 700 ELGVGQ----PITCSMGVAQYIRGETVEQWVARADTALYEAKAAGKN 742 >gi|319783812|ref|YP_004143288.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169700|gb|ADV13238.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 355 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 64/166 (38%), Positives = 86/166 (51%), Gaps = 8/166 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVF-----FDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+ + N AF + YN I+F DID FK IND FGHPVGDK+I Sbjct: 174 RLADTDPLTHIWNRRAFDKEITRIYNSNRGILFNALVLADIDRFKDINDRFGHPVGDKII 233 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++D MFV R GGEEFA G+SE +A +R +IE + S + Sbjct: 234 QSIADIFQTSIRGDMFVARTGGEEFALIVEGASEDATYDVAERIRALIEQTPFTSSQTGT 293 Query: 216 IH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +T+S GI E + +AD+ALY +K SGRNRV S Sbjct: 294 NYGTVTVSMGICMASEAEGPEDLYTKADRALYRSKVSGRNRVTRHS 339 >gi|163750477|ref|ZP_02157716.1| sensory box/GGDEF family protein [Shewanella benthica KT99] gi|161329798|gb|EDQ00786.1| sensory box/GGDEF family protein [Shewanella benthica KT99] Length = 321 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 21/221 (9%) Query: 57 PFYGLEYILVENLSLVIIS------ITISLLLGYISGSILKELFISY--NRISQLSRIDC 108 P G + +N++L+ +S IS+++ ++ + +L + R+ LS+ D Sbjct: 101 PITGRADFMYQNVTLLPLSSLTGQITHISMIVYDVTDVAIHKLQLKAVNERLEHLSQTDG 160 Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L N + Y +K S+V FDID+FK++ND +GH GDKVI +S Sbjct: 161 LTQLHNRRYWQICMQKEFDRHARYGDKTSLVMFDIDHFKKVNDTYGHMAGDKVIQHISHL 220 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L GR GGEEFA +S ++A A LR I +++ I G I +T+S Sbjct: 221 LKQSLRETDCAGRYGGEEFAVVLAKTSAKDALNFAERLRHKIATTEL-IYEGEPIKVTVS 279 Query: 222 AGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259 GI++ +E I + ADQALY AKK+GRN V + Sbjct: 280 IGISDL--QEQIGNSGQWLSFADQALYQAKKAGRNNCVIYK 318 >gi|134096466|ref|YP_001101541.1| putative signal peptide [Herminiimonas arsenicoxydans] gi|133740369|emb|CAL63420.1| Conserved hypothetical protein; putative GGDEF domain [Herminiimonas arsenicoxydans] Length = 492 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 8/167 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAF-----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPV 150 R+ Q++ D L+GLLN AF + L S + LS + FDID+FK +NDN GH Sbjct: 317 RRLEQIAGTDTLTGLLNRQAFEIVFQQAILDSERRRIPLSAILFDIDFFKMVNDNHGHLA 376 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ ++ V R GGEEF ++A LA +R +I + Sbjct: 377 GDRILQSIAAITKNAVRESDIVTRWGGEEFLVLLKDCPLEQATALAEKIRSMIAGHDFEL 436 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + ++H+T+S G+AE ++E + RAD ALY AK GRNRV+ Sbjct: 437 PAS-ALHLTVSLGVAEYAYRETWLSFFGRADTALYQAKSEGRNRVIV 482 >gi|242280482|ref|YP_002992611.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens DSM 2638] gi|242123376|gb|ACS81072.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens DSM 2638] Length = 779 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 9/166 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 +++ +L+ D L+GL N F+ S Y LS++ DIDYFK +ND +GH Sbjct: 603 DKLRKLATTDSLTGLSNRRFFMESAEDALERTRRYGRDLSLLMMDIDYFKTVNDMYGHDA 662 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ LS + + GR+GGEEF+ + A ++A LR IE +++N Sbjct: 663 GDDVLKGLSKTGLKILRNIDVFGRIGGEEFSILLPDTGLDGATLVAERLRAEIETTKMNT 722 Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255 SG S++IT+S G+A H + + ++ AD LY AK++GRN+V Sbjct: 723 RSG-SLNITVSIGVATYSEHTKTLEQLLKAADIGLYAAKEAGRNQV 767 >gi|50119607|ref|YP_048774.1| putative signaling membrane protein [Pectobacterium atrosepticum SCRI1043] gi|49610133|emb|CAG73573.1| putative signaling membrane protein [Pectobacterium atrosepticum SCRI1043] Length = 489 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 15/177 (8%) Query: 94 FISYNR-----ISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFK 140 F+S NR I S D L+ N AF+S L +++++F DIDYFK Sbjct: 305 FVSMNRRLIKIIESNSLKDALTNTFNRRAFLSMLNVRQGVLMNKRKRQITLLFLDIDYFK 364 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND +GH GD++IA + L + R GGEEF AA +++++ +A LR Sbjct: 365 QVNDTYGHACGDELIASFARMLSANIRPSDILCRWGGEEFIIAAYDLTDEQSEAMAEALR 424 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255 ++ E++ + +S G I+ T+S G+A E I +I AD+ LY AK GRN V Sbjct: 425 RLTESTPLMLSDGREIYFTVSIGVAIFSQYEGGNIYDLIGLADEQLYKAKAQGRNCV 481 >gi|34496267|ref|NP_900482.1| hypothetical protein CV_0812 [Chromobacterium violaceum ATCC 12472] gi|34330290|gb|AAQ58487.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 383 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 9/162 (5%) Query: 102 QLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+ L N FI + ++S++ D+D+FK IND++GH VGD+V Sbjct: 214 RLATQDGLTELNNRRQFIELADREIERSRRHGSRMSVLMMDLDHFKDINDHYGHAVGDEV 273 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I S V GRLGGEEFAA + +A +A LR + +++++ SG Sbjct: 274 IRHFSQVCREVLRASDLCGRLGGEEFAAVLPDTGLDDARQVAERLRSLASSARLSAVSG- 332 Query: 215 SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 S+ T+S G+AER E I ++ RAD+ LY AK+ GRNRV Sbjct: 333 SLGYTVSIGVAERHADETDIDEVLGRADKQLYQAKRDGRNRV 374 >gi|304321912|ref|YP_003855555.1| hypothetical protein PB2503_11844 [Parvularcula bermudensis HTCC2503] gi|303300814|gb|ADM10413.1| hypothetical protein PB2503_11844 [Parvularcula bermudensis HTCC2503] Length = 377 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 91/163 (55%), Gaps = 11/163 (6%) Query: 102 QLSRIDCLSGLLNHSAFI--------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 L+ D LSG LN AF SL +N LS V DID+FK++ND +GH VGD+ Sbjct: 183 DLAMTDPLSGALNRRAFTILAQREVRRSLRHHN-ALSAVMVDIDHFKRVNDTYGHAVGDE 241 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 VIA ++ + + +GRLGGEEF + ++A + + L + I SG Sbjct: 242 VIASVAALINRIKRQEDLLGRLGGEEFGLILPDTDIEQALRMTDRLIEAIRGLSFTGGSG 301 Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT S G+A R H +P+S + RAD+ALY AK++GRNRV Sbjct: 302 -TFRITASLGVASLRGHDDPLSEFLRRADEALYKAKENGRNRV 343 >gi|253690024|ref|YP_003019214.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756602|gb|ACT14678.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 362 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 17/193 (8%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LS+VI+S+ + LL ++ L EL I ++R D L+G L AF + Sbjct: 175 LSVVILSVILGSLLSLLAKKYLIELPI-------IARYDDLTGYLRRDAFFLAANKAFSI 227 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +S++ DIDYFKQ+ND+FGH VGD + F++D F GR+GG+EFA Sbjct: 228 ANLTKRPVSVILIDIDYFKQVNDSFGHSVGDDALKFVADTFKKSFRREDIFGRIGGDEFA 287 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240 + +A + + R+ + N+ ++G I +T+S G+ E KE + ++ RA Sbjct: 288 IVLPNTGIDDAYTIVDRARERVSNTPCETAAG-KIRLTVSIGLVEYHVAKEDLIEVMKRA 346 Query: 241 DQALYVAKKSGRN 253 D LY AKK+ RN Sbjct: 347 DDNLYTAKKT-RN 358 >gi|291086281|ref|ZP_06571446.1| response regulator [Citrobacter youngae ATCC 29220] gi|291068734|gb|EFE06843.1| response regulator [Citrobacter youngae ATCC 29220] Length = 558 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/162 (40%), Positives = 85/162 (52%), Gaps = 12/162 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R+SQ D LSGL NHS L S +V D+D FK IND +GH VG Sbjct: 396 RMSQ----DSLSGLYNHSTTTHYLKSAIAESNYSGNPFCMVMVDLDRFKSINDTYGHAVG 451 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI +S + VGR GGEEF G+S +AA + LR+ E +++ Sbjct: 452 DQVIVGISQLFSHRLRSTDIVGRYGGEEFVIIMPGTSSDKAARVVERLRRDYEQVTFSVN 511 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 S H T SAGIA+ + + T+ RADQALY AK++GRN Sbjct: 512 DA-SFHSTFSAGIAQWQFGDRVETLRERADQALYAAKQNGRN 552 >gi|172065325|ref|YP_001816037.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] gi|171997567|gb|ACB68484.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] Length = 506 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151 ++ L+R D L+GL N A ++L E+L S++F D D+FKQ ND +GH G Sbjct: 328 LTDLTRTDPLTGLHNRRALDAALADEWERLQRGSDGSLSVLFIDADHFKQYNDRYGHAQG 387 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 D + FL++ + R GGEEF A + E+ A +A +R +E ++++ Sbjct: 388 DTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDERGAQQVAEAIRGAVERNRLDG 447 Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 ++ P+ ++I R + + ++AD ALY AK+ GRNR VC +D+E+ Sbjct: 448 FDATMPAFTVSIGCATGHRARPPSVHALTHQADLALYAAKRQGRNR-VCVADVES 501 >gi|331017357|gb|EGH97413.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 322 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 112/214 (52%), Gaps = 10/214 (4%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L P L + + + + + + + +G+++ + +L+ N + LSR D L+GLLN Sbjct: 99 LNPVVNLNGNMTQIYACLPVLVIYPIFIGWMNHQVTLKLWEHRNILRTLSRTDSLTGLLN 158 Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 H A+ L + +++ I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 159 HGAWKDLLDLEFAKSQNQHQECVIALIDIDHFKIINDTYGHLMGDTVLQNISEALIENLR 218 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 +GR GG+EF +S +A + +R I+ ++ S + ++S GIA Sbjct: 219 DSDLIGRCGGDEFCVILPNTSLLQAREILERMRLAID--ELTYSLHCDLKASLSVGIAAY 276 Query: 228 CHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + P S+ ++ AD+ALY+AK +GRNRVV D Sbjct: 277 SPELPDASSWLHEADKALYLAKSTGRNRVVSAED 310 >gi|241766036|ref|ZP_04763954.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii 2AN] gi|241363963|gb|EER59238.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii 2AN] Length = 1152 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 99/170 (58%), Gaps = 20/170 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+GL N AF++ L + S ++ D+D+FK++ND +GH GD Sbjct: 977 LERLATTDALTGLANRRAFMARLEEERMRPSMGGRGGMLIMLDLDHFKRVNDTWGHAAGD 1036 Query: 153 KVIAFLSDQLV--VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 +V+ L+ L ++ T + GRLGGEEFA ++ +EA +A LR+ +E S+I++ Sbjct: 1037 EVLVHLARLLRGDLLRATDL-AGRLGGEEFAVLLPDTTAEEALGVAERLRRALEQSKIHV 1095 Query: 211 SSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVV 256 G ++ +T+S G+A PI+ ++ AD ALY AK +GRN+VV Sbjct: 1096 GDGATLQVTMSLGVA------PITGDALAVLAHADIALYEAKNTGRNKVV 1139 >gi|186471654|ref|YP_001862972.1| diguanylate cyclase [Burkholderia phymatum STM815] gi|184197963|gb|ACC75926.1| diguanylate cyclase [Burkholderia phymatum STM815] Length = 202 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 12/186 (6%) Query: 81 LLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 L+G + G +L +S +R++ +D L+ LN AF ++ SY L++ Sbjct: 5 LMGAVLGLVLPAAAMSDVIDRLTLERDLDSLTETLNRRAFERMAGRRVADRRSY--PLAL 62 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + FDID FK IND +GH GD V+ + L V R+GGEEF G+ ++ Sbjct: 63 IAFDIDNFKSINDRYGHAAGDAVLRQFAAILRAAVREKDVVARIGGEEFVLLLPGADDKF 122 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A +A LR ++E+S+ N ++ +T SAGIA E + ++ RAD LY AK++G Sbjct: 123 AYQIAERLRIVLESSRFNEIEA-TLRVTTSAGIARHRPGETVGALLARADHLLYAAKRAG 181 Query: 252 RNRVVC 257 RNRVV Sbjct: 182 RNRVVT 187 >gi|307730162|ref|YP_003907386.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003] gi|307584697|gb|ADN58095.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003] Length = 421 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 5/161 (3%) Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + + + D L+GL N F I +L + S+ DID+FK+IND GH GD+V+ Sbjct: 258 LKEQATTDALTGLPNRRGFLQYIQTLLGDTDVFSVFILDIDFFKEINDEHGHDAGDEVLR 317 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGPS 215 L+ + P R GGEEF AA G+ + A +A+ LRK E +S Sbjct: 318 VLAKVGASMTSRPCLFARWGGEEFVAALPGADARRAYDIADALRKRYERQDFAQVSRLEP 377 Query: 216 IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 I T+S G+ R +E + ++ RAD+ALY AK++GRNRV Sbjct: 378 IPFTVSIGVVTREAREADVDALMKRADRALYRAKRAGRNRV 418 >gi|254492134|ref|ZP_05105309.1| GGDEF domain protein [Methylophaga thiooxidans DMS010] gi|224462686|gb|EEF78960.1| GGDEF domain protein [Methylophaga thiooxydans DMS010] Length = 252 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 97/170 (57%), Gaps = 9/170 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N++ L+ D L+ LL+ AF++S + ++ SI + DID FK+IND++GH Sbjct: 76 NKMRYLASYDDLTELLSRRAFLTSSQKLFSLMNRSHKPFSIAYIDIDDFKKINDSYGHAA 135 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ S L V + VGR+GGEEFA A + AA + +R++ E + Sbjct: 136 GDEVLKSFSVILEVHTRSSDLVGRIGGEEFAIALPDTGAHGAARVVELIREVSEQQMLTT 195 Query: 211 SSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SS ++ TIS GI ++ + + +I +AD+ALY AK +G+NR++ F Sbjct: 196 SSKATLSYTISIGISTSDSNKTQTLEQLIQQADRALYEAKVAGKNRIIQF 245 >gi|88861176|ref|ZP_01135809.1| hypothetical protein PTD2_00242 [Pseudoalteromonas tunicata D2] gi|88816769|gb|EAR26591.1| hypothetical protein PTD2_00242 [Pseudoalteromonas tunicata D2] Length = 603 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 15/183 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQI 142 L+EL + + + +D L+G+ N S F L S+ E+ L+++ DID+FK+I Sbjct: 419 LQELEEKNRELEEKNTLDSLTGIRNRSYFDKKLTMEFRRSHREQTPLAVMMLDIDFFKKI 478 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD I F++ + P V R GGEEFA + + A ++A +R Sbjct: 479 NDTFGHLAGDDAIRFVAHTIQTSLKRPSDEVCRYGGEEFAVILPNTDTEGALLVAEAIRA 538 Query: 202 IIENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I +Q++ ++G I++TIS G IA+R H+ T + AD+ALY AK +GRN+VV Sbjct: 539 QISEAQVHTTAGI-INMTISVGLFSDIAQRNHEPNQYTAL--ADKALYQAKHAGRNQVVF 595 Query: 258 FSD 260 + D Sbjct: 596 YDD 598 >gi|45655763|ref|YP_003572.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602734|gb|AAS72209.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 561 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 92/171 (53%), Gaps = 12/171 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S N++S+L D L+G+ N F I+ + + +I+ DID+FKQ+ND FGH Sbjct: 389 SMNQVSKLIHTDPLTGIWNRRGFLKLTQRSIALENRHKNEWAILMIDIDHFKQVNDRFGH 448 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDK + ++ L V R GGEEFA G ++ + +A +LRK +EN QI Sbjct: 449 DAGDKTLIRVAQILSRSIRQTDVVCRWGGEEFAIFLCGVGQEISINIAEELRKEVEN-QI 507 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + G +T+S G++ K+ + ADQALY AK SGRNRV F+ Sbjct: 508 RLKDGNP--VTLSIGVS--GGKQNLEEAFTNADQALYQAKTSGRNRVCAFN 554 >gi|88703914|ref|ZP_01101629.1| GGDEF family protein [Congregibacter litoralis KT71] gi|88701741|gb|EAQ98845.1| GGDEF family protein [Congregibacter litoralis KT71] Length = 503 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 16/175 (9%) Query: 98 NRISQLSRI---DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147 R+S L R D L+G +N F S L + LS++F D D+FKQ+ND++G Sbjct: 317 QRVSMLERQGQRDSLTGAINRGHFHSELDRLFDEATQSGQPLSLMFIDADHFKQVNDSYG 376 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+ +L++ + G VGR GGEEF S+E EA L + + N Sbjct: 377 HLAGDEVLKWLAEAFTKLVGDKGIVGRYGGEEFVVILPASTEAEANALGQTICDHVRNGH 436 Query: 208 INISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I+ +I +T+SAGIA + +I+ ADQA+Y AK+SGR+ +C S Sbjct: 437 ISAGDA-NIQVTVSAGIATIDKTSTLRGTRDLIFAADQAMYFAKQSGRD--LCIS 488 >gi|86138374|ref|ZP_01056948.1| Putative diguanylate cyclase (GGDEF domain) [Roseobacter sp. MED193] gi|85824899|gb|EAQ45100.1| Putative diguanylate cyclase (GGDEF domain) [Roseobacter sp. MED193] Length = 300 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 9/200 (4%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 GLEY ++ L V + T L +G S+ +L IS+L+R D L+GLLN A Sbjct: 98 GLEYGYLQPLRTVFVIATPCLFIGL---SLAVKLEAQREEISRLARTDVLTGLLNRGAMD 154 Query: 120 SSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + L S N S++ DID+FK +ND+FGH GD+ + ++ L V + + R GG Sbjct: 155 AVLASAISNRAGSLLLMDIDHFKSVNDDFGHAAGDECLRAVAKFLRQVLPEEVELARWGG 214 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHKEPISTI 236 EEF A E A AN ++++ + I+ I IT S G+A P+ + Sbjct: 215 EEFVALVRRQQVSEVAPFAN---RLVKGFSLPITGRNQPIRITFSIGVANLSEVGPVDAL 271 Query: 237 IYRADQALYVAKKSGRNRVV 256 + AD LY+AK GR + V Sbjct: 272 LKLADTRLYLAKSWGRAQWV 291 >gi|332994531|gb|AEF04586.1| GGDEF domain-containing protein [Alteromonas sp. SN2] Length = 319 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 9/159 (5%) Query: 104 SRIDCLSGLLNHSAFIS------SLGSYNEKLSI-VFFDIDYFKQINDNFGHPVGDKVIA 156 SRID L+GL N + L +K S + DID+FK++ND +GH GDKVI Sbjct: 153 SRIDGLTGLFNRRYWQERFEQSYKLAKRQDKASTAMMLDIDHFKKVNDTYGHQAGDKVIQ 212 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 LS + GR GGEEFA SS ++A I+A +R++ E + G I Sbjct: 213 MLSALIKRCVRETDLAGRYGGEEFAVILTDSSVEKAVIVAERIRRLAERLVVE-HDGEEI 271 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254 T+S G+AE H + + +ADQALY AK+SGRN+ Sbjct: 272 TFTVSLGLAEFDPHSKSSMAWLEKADQALYEAKESGRNK 310 >gi|297537357|ref|YP_003673126.1| diguanylate cyclase [Methylotenera sp. 301] gi|297256704|gb|ADI28549.1| diguanylate cyclase [Methylotenera sp. 301] Length = 602 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 10/175 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 + EL + IS+++ D L+G LN ++ E+ LS+ DID+FK+I Sbjct: 425 INELTTKLDYISEVAHEDFLTGALNRRGMDEAIEREFERADRHSTALSLAMIDIDHFKKI 484 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRK 201 ND GH GD +A L+ + + + + R GGEEF GS + +A ++A R Sbjct: 485 NDTMGHSTGDVALAHLAKVVKSILRSTDVLARYGGEEFVILLPGSKQDDAVNVIAGVQRD 544 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +N + + + IT SAG+AER E + ++ RAD ALY+AK++GRNRVV Sbjct: 545 LTKN--FFMHNSERVLITFSAGVAERMTGESVDAVLPRADAALYLAKQTGRNRVV 597 >gi|209544655|ref|YP_002276884.1| PAS/PAC sensor-containing diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5] gi|209532332|gb|ACI52269.1| diguanylate cyclase with PAS/PAC sensor [Gluconacetobacter diazotrophicus PAl 5] Length = 464 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 91/169 (53%), Gaps = 11/169 (6%) Query: 103 LSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 L+R+D L+GL N AF + G + +++ DID FK IND +GH GD V Sbjct: 294 LARVDHLTGLPNRRAFTEGMEQAWQMLRGGVSRGGAVLMIDIDRFKTINDRYGHAAGDAV 353 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L+ F GR+GGEEFAA + EA +A LR+ I + + S Sbjct: 354 LRHVATVLMATLRATDFTGRMGGEEFAACLPDTGLDEAGRIAERLRQAIAGTPVPFES-H 412 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 SI +T+S GI++ R + RAD ALY AK++GR+R V F+ +E Sbjct: 413 SIALTVSIGISKMRLADAGGDDALSRADMALYSAKENGRDR-VAFATLE 460 >gi|162149402|ref|YP_001603863.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus PAl 5] gi|161787979|emb|CAP57583.1| putative signalling protein, GGDEF family [Gluconacetobacter diazotrophicus PAl 5] Length = 464 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 91/169 (53%), Gaps = 11/169 (6%) Query: 103 LSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 L+R+D L+GL N AF + G + +++ DID FK IND +GH GD V Sbjct: 294 LARVDHLTGLPNRRAFTEGMERAWQMLRGGVSRGGAVLMIDIDRFKTINDRYGHAAGDAV 353 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L+ F GR+GGEEFAA + EA +A LR+ I + + S Sbjct: 354 LRHVATVLMATLRATDFTGRMGGEEFAACLPDTGLDEAGRIAERLRQAIAGTPVPFES-H 412 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 SI +T+S GI++ R + RAD ALY AK++GR+R V F+ +E Sbjct: 413 SIALTVSIGISKMRLADAGGDDALSRADMALYSAKENGRDR-VAFATLE 460 >gi|159897665|ref|YP_001543912.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] gi|159890704|gb|ABX03784.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] Length = 582 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 16/172 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ ID L+GL N F+ S E+ L+I+ FDID+FKQIND GH +GD Sbjct: 414 LERLATIDSLTGLYNRRHFLGLAQSLLEQAWQAGNALAILLFDIDHFKQINDRHGHHIGD 473 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQ 207 +++ ++ +GR GGEEF S EA ++A LR IE ++Q Sbjct: 474 QMLQLVATTAQAALRQSDLLGRYGGEEFVVMLTRVSNAEALLVAERLRSAIEQLILTDNQ 533 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++++ S+ +T+S AE P+ +I +AD ALY AK +GRN V +S Sbjct: 534 QSVTTSISVGLTLSYPHAEI----PLERLIQQADHALYQAKAAGRNNVQIYS 581 >gi|92113187|ref|YP_573115.1| diguanylate cyclase with PAS/PAC and GAF sensors [Chromohalobacter salexigens DSM 3043] gi|91796277|gb|ABE58416.1| diguanylate cyclase with PAS/PAC and GAF sensors [Chromohalobacter salexigens DSM 3043] Length = 570 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 10/179 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQI 142 L ++ + ++ L+R D L+GL N + + S + + + DID+FK I Sbjct: 392 LSQVKKERDEMAALARKDQLTGLPNRAYLNEYVDMLVKSPDVQHAGICLAVIDIDHFKTI 451 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND +GH +GD+VI +LS+++ V F R+GGEEF SS + A + +R Sbjct: 452 NDTYGHDIGDQVIIWLSERVTEVLRARAGDFAARVGGEEFVVMINNSSLEVARSVMERVR 511 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 IE++ I I +HITIS+G+ + + + RAD+ALY AK GRN+ VC S Sbjct: 512 SKIESTPIPIEEASPLHITISSGVTQWQPTDTYPHVFKRADEALYEAKHGGRNQ-VCVS 569 >gi|149189286|ref|ZP_01867572.1| diguanylate cyclase [Vibrio shilonii AK1] gi|148836845|gb|EDL53796.1| diguanylate cyclase [Vibrio shilonii AK1] Length = 608 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 12/175 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNF 146 EL + R+ + D L+GL N F+S L E L + + D+D+FKQ ND + Sbjct: 427 ELIETNRRLHIAAETDELTGLPNRRPFMSELAHNTESLFVSTITTMMIDVDHFKQYNDTY 486 Query: 147 GHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD + +++ L V +P V R+GGEEF A + +S++E+ +LA +R+ +E Sbjct: 487 GHVQGDFALRYVAQALKQVL-SPCGHMVARIGGEEFCALLVNTSQEESVVLAQQMRQEVE 545 Query: 205 NSQINIS-SGPSIHITISAGIA-ERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 I S + P +TIS G+A + PI+ ++ AD+ALY AKK GRN V Sbjct: 546 KLNITHSGNDPYDIVTISIGVAFQHLGDHPITPQNMLENADEALYAAKKRGRNHV 600 >gi|148553328|ref|YP_001260910.1| diguanylate cyclase [Sphingomonas wittichii RW1] gi|148498518|gb|ABQ66772.1| diguanylate cyclase [Sphingomonas wittichii RW1] Length = 378 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 9/179 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 GS + L ++ D L+GL N AF ++ + LS+ F DID+F Sbjct: 195 GSQMSSLQGELAEAQAVAESDPLTGLANRRAFQARLARAMAQAAAEGTPLSVAFCDIDHF 254 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K INDN GH GD+++ +++ LV G FVGR GGEEF G + AA+ +++ Sbjct: 255 KSINDNHGHDTGDRILKMVAEALVEGVGEDAFVGRFGGEEFLILFDGIMARRAAMRVDEV 314 Query: 200 RKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 R + + + P +T SAG+A+ E ++ RAD+ALY AK GRNRV+ Sbjct: 315 RDELSGRHLVSKTTGEPLGTVTFSAGVAQLLVGEDDGAMLRRADEALYAAKNGGRNRVI 373 >gi|257865352|ref|ZP_05645005.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC30] gi|257871682|ref|ZP_05651335.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC10] gi|257799286|gb|EEV28338.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC30] gi|257805846|gb|EEV34668.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC10] Length = 350 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 37/213 (17%) Query: 76 ITISLLLG-YISGSILKE--LFISY------------------NRISQLSRIDCLSGLLN 114 I IS L G Y++G I K ++I Y RI L +ID L+ L N Sbjct: 145 IAISFLFGFYLTGDIQKTTLIYIVYGILAYTLAFFLYSIVNDMQRILALVKIDDLTQLNN 204 Query: 115 HSAFISS---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT--- 168 F L + LSI DID+FK ND +GH GD ++ ++ +F T Sbjct: 205 FRKFQDDRQRLDTTEVDLSIALIDIDHFKNYNDRYGHRAGDVIL----QEIARIFSTYCT 260 Query: 169 ---PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 P++ R+GGEEFA G + Q AA L ++K I +I + +G S+ IT+S GIA Sbjct: 261 ASNPVY--RIGGEEFAILIQGDA-QAAAYLLEKIQKRIRYQEIILDAGDSVSITLSIGIA 317 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +R E + RADQALY AK+SGR+++ + Sbjct: 318 QRQKGELLQQTQERADQALYRAKRSGRDQLCLY 350 >gi|242279563|ref|YP_002991692.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens DSM 2638] gi|242122457|gb|ACS80153.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens DSM 2638] Length = 838 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 10/173 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 N++ +++ D ++ L N FI + S Y+ LS+V FD+D FK +ND +GH V Sbjct: 665 NQLRRMATTDDMTKLNNRRYFIELVKSEIERSIRYSRPLSLVMFDVDKFKAVNDTYGHDV 724 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ V +GRLGGEEFA + + A +LA LR ++E + + + Sbjct: 725 GDMVLKAIAATAKGVLRDVDIIGRLGGEEFAVGLPETDLKGAMLLAERLRVVLEEASVEL 784 Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 G + T+S G+A +R + + ++ AD ALY AK++GRNRV ++ + Sbjct: 785 PDGGIVDFTVSLGVAVLDRSITD-VDVLLKHADLALYAAKENGRNRVEAYTQM 836 >gi|330829572|ref|YP_004392524.1| PAS/PAC sensor-containing diguanylate cyclase [Aeromonas veronii B565] gi|328804708|gb|AEB49907.1| Diguanylate cyclase with PAS/PAC sensor [Aeromonas veronii B565] Length = 429 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 99/196 (50%), Gaps = 13/196 (6%) Query: 75 SITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFIS------SL 122 S+ + LLG + +++ EL ++ Q S D L+GL N F SL Sbjct: 231 SVKVPFLLGDGTPTLIGISSDITELHQLKEQLHQQSVRDGLTGLYNRRFFFEMCEKNLSL 290 Query: 123 GSYNEKLSIVF-FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + S++ D+D FK IND FGHP+GD + L + V + + R+GG+EFA Sbjct: 291 DMRHHLTSVLMVLDVDQFKCINDRFGHPLGDSALVHLGRVMQSVLRSEDVLARIGGDEFA 350 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 ++ AA LA LR + S + + G + ITISAG+ E E + ++ RAD Sbjct: 351 ILLPNTTLSAAASLAERLRLQVMQSPLPLPDGDKLVITISAGLVENGEGELMESLYARAD 410 Query: 242 QALYVAKKSGRNRVVC 257 Q LY AK+SGRN V C Sbjct: 411 QMLYQAKQSGRNCVAC 426 >gi|209549403|ref|YP_002281320.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535159|gb|ACI55094.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 391 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 2/164 (1%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 ++++L+ D L+G+ N F SSL S + V DID+FK +ND FGH GD V+ Sbjct: 212 KLTRLANTDMLTGVPNRQHFFSSLPKSLGPGDAFVLIDIDFFKSVNDRFGHDRGDIVLVD 271 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++ + GRLGGEEF+ G +E A LA +R+ + + + G + Sbjct: 272 VARTIARSIPPSSVFGRLGGEEFSLFVRGETEASAFALAEQIREAVNTLDL-VFEGKQVS 330 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 T+SAG+A I RADQALY AK +GRNRV F+ I Sbjct: 331 TTVSAGVALWEANLTEQDIQKRADQALYSAKNNGRNRVELFTGI 374 >gi|170743149|ref|YP_001771804.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium sp. 4-46] gi|168197423|gb|ACA19370.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium sp. 4-46] Length = 300 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 10/167 (5%) Query: 102 QLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+ LLN AF I+ + KL++V DID FK+IND GH +GD I Sbjct: 131 RLAETDSLTELLNRRAFVQRVAEIAGRAGNHGKLALVVADIDNFKRINDEHGHALGDVAI 190 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L V + VGRLGGEEF A G S +EA +AN LR + GP Sbjct: 191 QGVATALSEVPDS--LVGRLGGEEFGVALPGRSLEEAEAIANRLRLRCTQLRFKGRHGP- 247 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDI 261 + ++ S G++ E I + RAD ALY AK +GRNRVV F+D+ Sbjct: 248 VQLSCSFGVSAWSEGETIEGLHKRADIALYEAKATGRNRVVSAFTDL 294 >gi|322714911|gb|EFZ06482.1| hypothetical protein SCA50_1997 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 381 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 30/267 (11%) Query: 19 LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67 + S+ + F++++ + F+ ++ ++ + + Y L P + L +L Sbjct: 115 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVRLN 173 Query: 68 ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114 N+ +++ +T++ +L Y I E ++ Y R+ ++ D L+G N Sbjct: 174 QYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 233 Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170 + S LG E +++ D+DYFK ND++GH GD +A ++ + TP Sbjct: 234 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPAD 293 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229 V R GGEEF SS EAA++A ++ + E + + +S S +T+S GI Sbjct: 294 LVARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTA 353 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ II RAD+ALY AK+ GRNR V Sbjct: 354 GDTVTGIIARADEALYRAKQQGRNRWV 380 >gi|313200646|ref|YP_004039304.1| diguanylate cyclase [Methylovorus sp. MP688] gi|312439962|gb|ADQ84068.1| diguanylate cyclase [Methylovorus sp. MP688] Length = 487 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 95/172 (55%), Gaps = 9/172 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I ++ D L+ L N AF + Y + L+++ DID+FKQIND GH G Sbjct: 317 QIETMATTDSLTHLPNRKAFEIIIDVIMQERIRYGKDLAVILLDIDHFKQINDRHGHFAG 376 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++ + + FV R GGEEF SE+ A +LA +R+ +E ++ Sbjct: 377 DQVLTEVALIIRSCLRSVDFVCRWGGEEFLILLKDCSERNARLLAEKIRETLETRPVDHK 436 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + P IH+T S G+A + E I ++ RAD A+Y AK GRN+V+ FS+ +N Sbjct: 437 NVP-IHLTASLGVAMVQNGERIEQVLERADYAMYQAKALGRNQVI-FSNFKN 486 >gi|221067583|ref|ZP_03543688.1| diguanylate cyclase [Comamonas testosteroni KF-1] gi|220712606|gb|EED67974.1| diguanylate cyclase [Comamonas testosteroni KF-1] Length = 184 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 88/155 (56%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+G+LN +A I + Y ++ LS++ DID+FK+IND+FGHP GDKVI + L Sbjct: 22 DTLTGVLNRAAVIELVNQYFVHDDLSLIVLDIDHFKRINDSFGHPTGDKVILGVVACLQA 81 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 V + +GR+GGEEF S + LA DLR+ IE ++ G ++ S G+ Sbjct: 82 VVPSSAQIGRVGGEEFTVVLPRQSAHVSERLAQDLRRAIEICDFDLPDGSG--VSASFGV 139 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + AD+ALYVAK+ GRN+ VC S Sbjct: 140 SWAPAGGDFDSAYGFADEALYVAKRGGRNQ-VCLS 173 >gi|90424196|ref|YP_532566.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gi|90106210|gb|ABD88247.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] Length = 410 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 9/157 (5%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+G+ N F I+ ++++ FDID+FK IND FGHP GD+++ Sbjct: 220 IDPLTGMFNRRGFSEATTRMIAREADAGRPVTVMIFDIDFFKSINDRFGHPAGDELLKLF 279 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + GR+GGEEF AA L S EA + A +R+ E I + P + Sbjct: 280 ATLVTNTLRISDLSGRIGGEEF-AALLPCSMDEALVAAERVREAFETCGIVVDDAP-VET 337 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+A + + ++ AD ALY AK+ GRNRV Sbjct: 338 TVSIGVAGGPPRTELEVLLAAADTALYQAKRGGRNRV 374 >gi|149921740|ref|ZP_01910187.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1] gi|149817391|gb|EDM76864.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1] Length = 752 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 90/178 (50%), Gaps = 19/178 (10%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHP 149 Y + + + D L+GL NH AF L + +K SI+ DID+FK +ND +GHP Sbjct: 580 YQSMEERATTDGLTGLTNHRAFQERLEQLHALSERTGQKFSIILTDIDHFKSVNDTYGHP 639 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD V+ ++ V R GGEEF + + AA+ AN LR+ I I Sbjct: 640 VGDAVLKRVAAIFTRRARKVDIVARYGGEEFVLVLPDTDAEGAAVFANRLREEIAAQTIT 699 Query: 210 ISSGPSIHITISAGIAE------RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +G S +T+S G+AE + H+ +I ADQALY K+ GRNRV D+ Sbjct: 700 SDNG-SFSVTLSLGVAEFPRDSTKRHE-----LIELADQALYYCKEHGRNRVTKVCDL 751 >gi|17229908|ref|NP_486456.1| hypothetical protein all2416 [Nostoc sp. PCC 7120] gi|17131508|dbj|BAB74115.1| all2416 [Nostoc sp. PCC 7120] Length = 332 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 106/194 (54%), Gaps = 14/194 (7%) Query: 77 TISLLLGYISGSILK-----ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 T +L+LG + + K +L + +S ++ D L+ L N A I+ S Sbjct: 124 THNLMLGQFTVGLRKAQKYRDLLQKNHILSAIALADSLTELNNRRALEWDLPRQITKARS 183 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 N LS+V D+DYFK++ND +GH +GD+++ L +L + R GGEEF Sbjct: 184 QNLPLSLVILDVDYFKKVNDQYGHLIGDRLLQSLCTRLRHNLRSQDTPFRYGGEEFVVIL 243 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242 ++ +EA I+A+ L +I+ Q +I+S I +TIS G+A E E +++++RADQ Sbjct: 244 ANTTGEEAMIVADRLNRIVGEQQFSINSKLMISVTISLGVACLETDDDEQGNSLLHRADQ 303 Query: 243 ALYVAKKSGRNRVV 256 L AK SGRN+V+ Sbjct: 304 CLLAAKASGRNQVI 317 >gi|300214705|gb|ADJ79121.1| Response regulator [Lactobacillus salivarius CECT 5713] Length = 273 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 12/205 (5%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDC----LSGLLNHSAFISSLGSYNEK 128 II +T+ LL + ++ +++R D L+ LLN+ +F S + ++K Sbjct: 60 IIDVTLGTLLMFAVANVYVNFLTKQYEELRMARYDVSHDGLTNLLNYDSFHSHMNELSQK 119 Query: 129 LS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV----FGTPMFVGRLGGEEF 180 S I DID FK++ND +GH G+ V+ + + +L V FG V R GGEEF Sbjct: 120 SSKHQIICILDIDDFKKLNDTYGHLEGNDVLVYFTKRLFVEVKAHFGELASVYRFGGEEF 179 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 + G + ++ + + L + + ++G I +T S GIA C K+ I T++ A Sbjct: 180 CISVHGVTVEDCLEMTDKLAEELRTKDYVTATGDKITVTFSGGIALGCDKKDIRTVLREA 239 Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265 D+ALY +K+ + V C D+E + Sbjct: 240 DKALYYSKRHKKGSVTCAKDLEKKS 264 >gi|126664512|ref|ZP_01735496.1| GGDEF family protein [Marinobacter sp. ELB17] gi|126630838|gb|EBA01452.1| GGDEF family protein [Marinobacter sp. ELB17] Length = 347 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 92/185 (49%), Gaps = 18/185 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131 +L+ ++ G + +EL ++L+ D L+G N + SL + Y+ SI Sbjct: 161 ALIFAWLVGRLQQEL-------TELATTDPLTGCRNRATLAESLTNQIQLCERYDRPSSI 213 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + D+D+FK IND +GH GD V+ ++ L + R+GGEEF +S E Sbjct: 214 LLLDLDHFKAINDKWGHHTGDTVLTGIARLLSNRLRDNDHIFRIGGEEFMVLLPETSLPE 273 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A LA +L K + G +TIS G+ + C E S + RADQALY AK G Sbjct: 274 AETLARELVKSVAVEPFQTGIG----VTISGGLTQACANETWSVWLKRADQALYKAKSDG 329 Query: 252 RNRVV 256 RNRVV Sbjct: 330 RNRVV 334 >gi|257874944|ref|ZP_05654597.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC20] gi|257809110|gb|EEV37930.1| GGDEF domain-containing protein [Enterococcus casseliflavus EC20] Length = 350 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 104/213 (48%), Gaps = 37/213 (17%) Query: 76 ITISLLLG-YISGSILKELFI--------------------SYNRISQLSRIDCLSGLLN 114 I IS L G Y++G I K I RI L +ID L+ L N Sbjct: 145 IVISFLFGFYLTGDIQKTTLIYIIYGILAYTLAFFLYSIVNDMQRILALVKIDDLTQLNN 204 Query: 115 HSAFISS---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT--- 168 F L + LSI DID+FK ND +GH GD ++ ++ +F T Sbjct: 205 FRKFQDDRQRLDTTEVDLSIALIDIDHFKNYNDRYGHRAGDVIL----QEIARIFSTYCT 260 Query: 169 ---PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 P++ R+GGEEFA G + Q AA L ++K I +I + +G S+ IT+S GIA Sbjct: 261 ASNPVY--RIGGEEFAILIQGDA-QAAAYLLEKIQKRIRYQEIILDAGDSVSITLSIGIA 317 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +R E + RADQALY AK+SGR+++ + Sbjct: 318 QRQKGELLQQTQERADQALYRAKRSGRDQLCLY 350 >gi|149186979|ref|ZP_01865287.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. SD-21] gi|148829368|gb|EDL47811.1| putative diguanylate cyclase (GGDEF) [Erythrobacter sp. SD-21] Length = 408 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 102/210 (48%), Gaps = 19/210 (9%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 Y V NLSL I ++ +++L + + ++ + + + +D L+GL AF + Sbjct: 184 YYSVLNLSLSIAALMCAMVL--VGACVYDQI----KSVKERAEMDLLTGLRTRRAFEQDV 237 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 + EK +S+V DID+FK +ND +GH VGDK IA + GR+ Sbjct: 238 IAQVEKAKLEGVPVSLVVADIDHFKAVNDVWGHQVGDKAIAAFGQVVTDTIRDTDIAGRI 297 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPIS 234 GGEEF A + A +A +RK +Q+ P H +T S G+A R E Sbjct: 298 GGEEFCVLAWNCDGEAAISMAERIRKCFAETQVE--GMPEDHRLTASFGVAGRNEGEGYG 355 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + RAD ALY AK+ GRNR V IEN Sbjct: 356 KVFARADAALYTAKEEGRNRTV---RIENK 382 >gi|90423659|ref|YP_532029.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gi|90105673|gb|ABD87710.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris BisB18] Length = 470 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 10/181 (5%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133 LL + + +++ +L+ D L+G+ N I L +LS+++ Sbjct: 277 LLSEANSRVEQQVEERTREFQRLAHADPLTGIANRRLLIERLDGEVARAAKAGGELSVLY 336 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DID+FK INDNFGH GD+V+ L+ + + VGR+GGEEF L + + A Sbjct: 337 VDIDHFKSINDNFGHAAGDRVLVQLAATMKSLLRQTDLVGRMGGEEFVVLLLNTDQAAAL 396 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +A+ LR+ I + + + P +TIS G+A E ++++ RAD AL AK+ GRN Sbjct: 397 RVADQLREAISRCEFELITRP---VTISVGVAGYEAAEDAASLLARADHALLQAKRCGRN 453 Query: 254 R 254 + Sbjct: 454 Q 454 >gi|157374862|ref|YP_001473462.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157317236|gb|ABV36334.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 420 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 93/170 (54%), Gaps = 17/170 (10%) Query: 106 IDCLSGLLNHSAFISSLGSYNE----------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +D L+G+ N F S Y E L++ DID FK +ND +GH VGD+V+ Sbjct: 255 LDYLTGVYNRRYFFSQ---YEELIILKKQKRGALTLALLDIDLFKGVNDTYGHDVGDEVL 311 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + +L FG V R GGEEF A G +E ++ L + R +E+ I+ S G Sbjct: 312 VEFAARLKRSFGQHFTVSRFGGEEFIVAFRGLNEVKSFALMDKFRSQLESKPISTSRG-E 370 Query: 216 IHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +T+SAGIA + +E + T+I RAD+ALY AK++GRN V SD E Sbjct: 371 LSVTVSAGIASLSDDESEESLDTLIQRADKALYDAKEAGRNLVCIESDHE 420 >gi|94496229|ref|ZP_01302807.1| sensory box/GGDEF domain protein [Sphingomonas sp. SKA58] gi|94424408|gb|EAT09431.1| sensory box/GGDEF domain protein [Sphingomonas sp. SKA58] Length = 600 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 94/160 (58%), Gaps = 13/160 (8%) Query: 103 LSRIDCLSGLLNH--SAFI--SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155 +++ D L+G+ N + F+ ++G+ + +SI FDID+FK+IND++GH GD+VI Sbjct: 443 MAQTDQLTGIANRRRTEFVLDQAIGAAEQSGKSVSIAIFDIDHFKRINDSYGHHTGDEVI 502 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ + VGR GGEEF ++++ A + +R+ IE + +SGP Sbjct: 503 KRVAQDAAAQLRSGDLVGRYGGEEFVIVLPDATQETALRVGERIRETIEAA----NSGPP 558 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +TIS G+AE E ++ RAD+ALY AK++GRNR+ Sbjct: 559 --VTISIGVAELAQGETADALLRRADRALYSAKRAGRNRL 596 >gi|163843324|ref|YP_001627728.1| diguanylate cyclase [Brucella suis ATCC 23445] gi|163674047|gb|ABY38158.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445] Length = 264 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 18/226 (7%) Query: 47 NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG---------YISGSILKELFI-- 95 ++ LF +G T + E L+ IS+++ LL ++ LKE + Sbjct: 14 SVVLFCVGATSITA--FWSGETPGLMAISLSLGFLLVMIFPFSAFIFLRYDKLKEAYAQL 71 Query: 96 --SYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150 S+ + +RID ++G LN A ++ S E +++ D D+FK IND+FGH V Sbjct: 72 EKSHVELQARARIDHMTGPLNREALFEAMKISRSRIETGTLLVIDADHFKAINDSFGHGV 131 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + ++ L V VGR+GGEEF G+S + +A +R +EN+ + Sbjct: 132 GDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPFHT 191 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +TIS G+A E S ++ RAD+ LY+AK+ GRN VV Sbjct: 192 TEYQVYPLTISIGVASAPKSETNSQVLSRADRCLYLAKQRGRNCVV 237 >gi|329850534|ref|ZP_08265379.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] gi|328840849|gb|EGF90420.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] Length = 352 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 19/200 (9%) Query: 79 SLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLS 130 S+L G +S S + L +++ + D L+ L N +F SL ++ + L+ Sbjct: 153 SVLEGRLSESSREVTRLRKHLDQVRMEAMTDALTNLANRKSFDESLDAHCDTDDVTKPLT 212 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + DID+FK+ ND +GH GD+V+ +++ L + P R GGEEF G + Sbjct: 213 LAVIDIDHFKRFNDTWGHQTGDQVLRYVASVLARIGRPPRMAARYGGEEFGLLFPGETSG 272 Query: 191 EAAILANDLR-----KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 L N+ R ++++ N G +TISAGIA+R H E ++ RAD+ALY Sbjct: 273 TVERLLNEARTEIASRVLKRRSTNEDLGT---VTISAGIAQRTHAEDAFDLLDRADKALY 329 Query: 246 VAKKSGRNRVVCFSDIENNT 265 ++K +GRN+V EN T Sbjct: 330 LSKNNGRNKVTV---AENET 346 >gi|83592608|ref|YP_426360.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170] gi|83575522|gb|ABC22073.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain [Rhodospirillum rubrum ATCC 11170] Length = 632 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 12/174 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ ID L+G+LN +F +S + +LS++ D D+FK +ND +GH GD Sbjct: 457 LRRLANIDGLTGVLNRRSFTEESELLLSLANRHGRRLSMMIVDADHFKGVNDTYGHDAGD 516 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ L+ ++ V +GR+GGEEFA + ++ A LA + I ++ + Sbjct: 517 RVLKALTGEIAGVLRKTDLLGRIGGEEFAILLPETDQEGAEGLAWRVVLAIRALEVPLPE 576 Query: 213 GPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFSDIEN 263 G + +T+S G++ C +T ++ AD ALY AK GR+RV CF ++ Sbjct: 577 GGVLKVTVSVGVS--CRNTEAATFDWMLKEADTALYAAKHGGRDRVACFGQTQS 628 >gi|209885133|ref|YP_002288990.1| diguanylate cyclase [Oligotropha carboxidovorans OM5] gi|209873329|gb|ACI93125.1| diguanylate cyclase [Oligotropha carboxidovorans OM5] Length = 355 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 11/200 (5%) Query: 74 ISITISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124 +S+T L ++ S L+ L S I S D L+ L N F +L S Sbjct: 146 MSLTNKALEARLATSRLEIASLQDSLEAIRTESLTDPLTSLGNRKYFDRALESAVEHASH 205 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 ++E LS++ DID+FK NDN+GH GD+V+ ++ L R GGEEF Sbjct: 206 HDEPLSLLMVDIDHFKSFNDNYGHLTGDQVLRLVALALKANIKGQDLTARYGGEEFVVIL 265 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQ 242 +S ++A +A+++R+ + + Q+ S I +TISAG++ + +I RAD Sbjct: 266 PNTSMRQALAVADNIRRAVMSKQLKKKSTGEILGRVTISAGVSTFRPGDDAPALIDRADA 325 Query: 243 ALYVAKKSGRNRVVCFSDIE 262 LY AK+ GRNRV+C +D E Sbjct: 326 CLYAAKRHGRNRVICEADPE 345 >gi|62180438|ref|YP_216855.1| hypothetical protein SC1868 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583636|ref|YP_002637434.1| hypothetical protein SPC_1855 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128071|gb|AAX65774.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468163|gb|ACN45993.1| hypothetical protein SPC_1855 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 376 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 30/267 (11%) Query: 19 LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67 + S+ + F++++ + F+ ++ ++ + + Y L P + L +L Sbjct: 110 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVRLN 168 Query: 68 ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114 N+ +++ +T++ +L Y I E ++ Y R+ ++ D L+G N Sbjct: 169 QYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 228 Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170 + S LG E +++ D+DYFK ND++GH GD +A ++ + TP Sbjct: 229 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPAD 288 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229 V R GGEEF SS EAA++A ++ + E + + +S S +T+S GI Sbjct: 289 LVARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTA 348 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ II RAD+ALY AK+ GRNR V Sbjct: 349 GDTVTGIIARADEALYRAKQQGRNRWV 375 >gi|315644895|ref|ZP_07898024.1| diguanylate cyclase and metal dependent phosphohydrolase [Paenibacillus vortex V453] gi|315279837|gb|EFU43138.1| diguanylate cyclase and metal dependent phosphohydrolase [Paenibacillus vortex V453] Length = 544 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 118/257 (45%), Gaps = 36/257 (14%) Query: 19 LESFSPHTFMIYFSIFFSIFIATVIFIAN-IFLFYIGLTPFYGLEYILVENLSLVIISIT 77 L+SF T ++Y S + +V+ + N +F GLT F GL Sbjct: 108 LKSFIKDTLLVYLSTLILSMVLSVLIVHNGVF----GLTLFIGL---------------- 147 Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130 S++L Y K+LF YN + + + D +GL NHS F I + + LS Sbjct: 148 -SIMLSYS----FKQLFSMYNEVQEKAIKDQRTGLYNHSYFENLLEDEIKKAKANDTPLS 202 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSE 189 + DID FK+ ND FGH GD ++ FL + L V V R GGEEF G E Sbjct: 203 LAMIDIDDFKKYNDQFGHLKGDMLLGFLGNYLKVESEVAEVVASRFGGEEFTILMPGYDE 262 Query: 190 QEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 +A N LRK + ++ + PS ++ SAGIA R S ++ ADQALY A Sbjct: 263 NKARSFINRLRKKLNDTYFEGVEIFPSGCLSYSAGIATYRIDIHDKSQLVELADQALYYA 322 Query: 248 KKSGRNRVVCFSDIENN 264 KK G+N V + N Sbjct: 323 KKQGKNNVHVYGSGANK 339 >gi|28899662|ref|NP_799267.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|28807914|dbj|BAC61151.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] Length = 396 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ QLS D L+GLLN AFIS+L + ++ LS + DID+FK IND+ GH G Sbjct: 209 RLKQLSETDALTGLLNRRAFISNLDNAIIQHTKRSQTLSCLMIDIDHFKDINDSVGHFSG 268 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D VI ++ V F+GRLGGEEFA ++ +A +A +R+ I+ + ++ Sbjct: 269 DHVITRIAHVCQGVIRGSDFIGRLGGEEFAVILTDTNAIQAYEVAERIRQAIQATICHVD 328 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I T+S G+AE + ++ AD+A+Y +K SGRN+V Sbjct: 329 D-VEITTTVSIGVAELNSQQSNAKELLIEADKAMYYSKHSGRNQVT 373 >gi|332306985|ref|YP_004434836.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174314|gb|AEE23568.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 370 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 8/163 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 + Q +RID LSGL N + L +++ ++++ DID+FKQ+ND +GH V Sbjct: 203 KKFEQQARIDSLSGLQNRRGMLEKLEYEHQRTLRHSKNMTLMMCDIDHFKQVNDKYGHDV 262 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI + V R GGEEF +S+Q+A +LA LRK IE+ + + Sbjct: 263 GDIVIKQVGQMFANGLRKQDTVARWGGEEFLFMLPETSQQQAFVLAEKLRKKIESYEQKV 322 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 S + +T+S GI + ++ + I RAD LY AK GRN Sbjct: 323 DS-THLSVTVSIGIYQMHPQDRLDHAISRADTNLYRAKTHGRN 364 >gi|218891041|ref|YP_002439907.1| hypothetical protein PLES_23041 [Pseudomonas aeruginosa LESB58] gi|218771266|emb|CAW27031.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] Length = 341 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 15/203 (7%) Query: 65 LVENLSLVIISITISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAF-- 118 L E L +SI L GY+ L E L +R + S +D L+ L N + F Sbjct: 141 LREGRQLNRLSI---LAEGYLQLRSLTEHTRFLRQEIDREQRKSLLDPLTQLWNRAGFHA 197 Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 + + ++++ I++ DID+FK+IND GH GD V+ + +L + Sbjct: 198 LHQHELELARASDQRIGIIYSDIDHFKRINDTLGHRAGDSVLREAASRLRAALRPEDLLA 257 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF A E ++AN +R+++E + I+ +G S+ +TISAG E Sbjct: 258 RFGGEEFVAMVQVRETTELTMIANRIRELMEATPIDC-AGTSVPVTISAGCTLAGSGEEP 316 Query: 234 STIIYRADQALYVAKKSGRNRVV 256 + RAD ALY AK++GRNRVV Sbjct: 317 EQALARADAALYDAKRAGRNRVV 339 >gi|167589310|ref|ZP_02381698.1| diguanylate cyclase [Burkholderia ubonensis Bu] Length = 506 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 12/177 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151 ++ L+R D L+GL N A +L E+L S++F D D+FKQ ND +GH G Sbjct: 328 LTDLTRTDPLTGLSNRRALDVALADEWERLQRGNDASLSVLFIDADHFKQYNDRYGHAQG 387 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 D + FL++ + R GGEEF A + E AA +A +R+ +EN+++ Sbjct: 388 DAALRFLAECIRAHTRRRGDIAARYGGEEFVAVLPDTDESGAAKVAEAIRREVENNRLAG 447 Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + P+ ++I A H I + +AD ALY AK+ GRNR VC + E +T Sbjct: 448 LAEAVPAFTVSIGCATARSAHPPSIDALSRQADLALYTAKRQGRNR-VCHAPAEQHT 503 >gi|144898776|emb|CAM75640.1| GGDEF domain protein [Magnetospirillum gryphiswaldense MSR-1] Length = 494 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G+ N I + Y LS++ DID+FK IND +GHP GD Sbjct: 326 MRKLATTDTLTGIANRRQLIETGEHEVARAHRYGHALSVLILDIDHFKAINDTWGHPAGD 385 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINIS 211 + I ++ + + GRLGGEEFA + AAI+A LR+ IE + Sbjct: 386 RAIQNVAKAMAGLVRDQDTAGRLGGEEFAIILPETDAAGAAIMAERLRQGIETTTTTQAD 445 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G I T+S G A + +++ RAD+ LY AK SGRNRV+ Sbjct: 446 DGTVIRFTVSIGTASLNAQEASFDSLLSRADKGLYQAKGSGRNRVMA 492 >gi|149195064|ref|ZP_01872156.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus TB-2] gi|149134777|gb|EDM23261.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus TB-2] Length = 750 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 84/177 (47%), Gaps = 25/177 (14%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS--------------------YNEKLSIVFFDIDYFKQ 141 QLS+I LS L AF L + Y LS++F DIDYFK+ Sbjct: 579 QLSKIKKLSKQLETMAFYDKLTNIYNRAKFKNILKEFIEYSKRYKTPLSLIFLDIDYFKK 638 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 INDNFGH GD V+ + + GR GGEEF + A I+A +R Sbjct: 639 INDNFGHEKGDLVLKEMVKVAKLSLRESDVFGRWGGEEFLILLPNTDINGAKIVAEKIRD 698 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 IE+ + I +T+S G+ + + I + + RAD ALY AKK GRNRVV F Sbjct: 699 AIESHDFD-----GIKVTVSLGVTQLKEDDTIESFVNRADIALYQAKKEGRNRVVVF 750 >gi|83593926|ref|YP_427678.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170] gi|83576840|gb|ABC23391.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum ATCC 11170] Length = 582 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 94/170 (55%), Gaps = 8/170 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R + +R+D L+G+LN +F ++ + L+++ DIDYFK +ND +GH VG Sbjct: 407 RAEREARVDYLTGVLNRRSFFELAEGELARSIRFGRPLAVLMIDIDYFKAVNDTWGHGVG 466 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++ + GR GGEEF A + +S EA +A L ++ +I Sbjct: 467 DEVLQNVAGLIGQTLRGADIFGRTGGEEFTAVIVEASGSEALEVAQRLCAVVAQGKIVGP 526 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260 G +I +T+S G++ ++ I+ R ADQA+Y AK++GRNRVV D Sbjct: 527 GGEAIGVTLSIGVSLLRGRDMAFEILSREADQAMYGAKRAGRNRVVVHRD 576 >gi|239993892|ref|ZP_04714416.1| hypothetical protein AmacA2_05343 [Alteromonas macleodii ATCC 27126] Length = 192 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 9/165 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + + D LSGLLN AF I++ Y LS+V DID+FK+IND GH +G Sbjct: 26 KLQRDANFDYLSGLLNRRAFQIVSQQAIAASHRYKRSLSVVMIDIDFFKRINDTHGHDMG 85 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DK I ++ L + V R+GGEEF + A LA LR I + +++ Sbjct: 86 DKAIKHVAKILKMSSRNADCVARIGGEEFVLLLPDTDRAGAFKLAEKLRDRISKNPLDV- 144 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 +G I IT+SAG++ + H + I + + AD ALY AK+SGRN V Sbjct: 145 NGKFIDITVSAGVSYVKEHHDTIESALSEADDALYKAKESGRNNV 189 >gi|242280298|ref|YP_002992427.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242123192|gb|ACS80888.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 377 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 7/192 (3%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRI--DCLSGLLNHSAFISSLGSYNEK- 128 II+ ++LLG ISG + ++++ NR + + D L+G N A +L N Sbjct: 185 TIIATLGAILLGMISG-VFGSIWLARNRKQMIEFVTRDALTGAYNRRALDDALHQLNGDK 243 Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + + D+D FK +ND +GH GD V+ + ++ V + GR GGEEF Sbjct: 244 GSFAALLLDLDNFKSVNDTYGHDAGDLVLKYFVEETQKVLRSNDLFGRYGGEEFLILLYD 303 Query: 187 SSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 + + AA LA +RK +E++ + + SSG +T+S G A P + AD+A+Y Sbjct: 304 TKLEHAAALAERIRKSVESNTVYLPSSGAHHSLTVSIGCAASDGSRPSEETVRMADKAMY 363 Query: 246 VAKKSGRNRVVC 257 AK+SGRN+VV Sbjct: 364 KAKQSGRNQVVV 375 >gi|262171617|ref|ZP_06039295.1| GGDEF family protein [Vibrio mimicus MB-451] gi|261892693|gb|EEY38679.1| GGDEF family protein [Vibrio mimicus MB-451] Length = 889 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + +LS+ D L+GL N AF S + +++SI DID+FKQIN Sbjct: 707 QKLRFQAEKFERLSKEDELTGLANRRAFDVYLKQAFSRVDHPGQQVSIGLLDIDHFKQIN 766 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S QL+ V R GGEEF +G +EA +LR I Sbjct: 767 DRYSHIIGDQAIVAVSQQLLKYVRDKTRVARWGGEEFTILYVGDP-KEAWSYFEELRCTI 825 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q++ S+ P + +T+S G A+ E +++ AD AL AKK GRNRVV Sbjct: 826 E--QVDFSTVAPGLTVTVSVGFADSQQAESYESVLKLADHALLTAKKLGRNRVV 877 >gi|258627565|ref|ZP_05722342.1| GGDEF family protein [Vibrio mimicus VM603] gi|258580147|gb|EEW05119.1| GGDEF family protein [Vibrio mimicus VM603] Length = 978 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + +LS+ D L+GL N AF S + +++SI DID+FKQIN Sbjct: 796 QKLRFQAEKFERLSKEDELTGLANRRAFDVYLKQAFSRVDHPGQQVSIGLLDIDHFKQIN 855 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S QL+ V R GGEEF +G +EA +LR I Sbjct: 856 DRYSHIIGDQAIVAVSQQLLKYVRDKTRVARWGGEEFTILYVGDP-KEAWSYFEELRCTI 914 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q++ S+ P + +T+S G A+ E +++ AD AL AKK GRNRVV Sbjct: 915 E--QVDFSTVAPGLTVTVSVGFADSQQAESYESVLKLADHALLTAKKLGRNRVV 966 >gi|90961999|ref|YP_535915.1| response regulator [Lactobacillus salivarius UCC118] gi|90821193|gb|ABD99832.1| Response regulator [Lactobacillus salivarius UCC118] Length = 391 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 12/205 (5%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDC----LSGLLNHSAFISSLGSYNEK 128 II +T+ LL + ++ +++R D L+ LLN+ +F S + ++K Sbjct: 178 IIDVTLGTLLMFAVANVYVNFLTKQYEELRMARYDVSHDGLTNLLNYDSFHSHMNELSQK 237 Query: 129 LS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV----FGTPMFVGRLGGEEF 180 S I DID FK+ ND +GH G+ V+ + + +L FG V R GGEEF Sbjct: 238 SSRHQIICILDIDDFKKFNDTYGHLEGNDVLVYFTKRLFAEVKAHFGKLASVYRFGGEEF 297 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 + G + ++ + + L + + ++G I +T S GIA C K+ I T++ A Sbjct: 298 CVSVHGVTVEDCLEMTDKLAEELRTKDYVTATGDKITVTFSGGIALGCDKKDIKTVLREA 357 Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265 D+ALY +K+ + V C D+E + Sbjct: 358 DKALYYSKRHKKGSVTCAKDLEKKS 382 >gi|56413215|ref|YP_150290.1| hypothetical protein SPA1005 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362140|ref|YP_002141777.1| hypothetical protein SSPA0937 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127472|gb|AAV76978.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093617|emb|CAR59086.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 376 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 30/267 (11%) Query: 19 LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67 + S+ + F++++ + F+ ++ ++ + + Y L P + L +L Sbjct: 110 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVQLN 168 Query: 68 ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114 N+ +++ +T++ +L Y I E ++ Y R+ ++ D L+G N Sbjct: 169 QYMNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 228 Query: 115 HSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170 + S LG E +++ D+DYFK ND++GH GD +A ++ + TP Sbjct: 229 RRSMESFLGGALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPAD 288 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229 V R GGEEF SS EAA++A ++ + E + + +S S +T+S GI Sbjct: 289 LVARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTA 348 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ II RAD+ALY AK+ GRNR V Sbjct: 349 GDTVTGIIARADEALYRAKQQGRNRWV 375 >gi|86750684|ref|YP_487180.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] gi|86573712|gb|ABD08269.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] Length = 261 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 112/211 (53%), Gaps = 19/211 (9%) Query: 66 VENLSLVI---ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---- 118 V++ SL++ +S +S L Y S ++++L ++ ++++SR D L+GLLN F Sbjct: 51 VQHASLIVAVGVSTVLSGALSYRSAILMRQLTLTRAELARISRTDPLTGLLNRRGFDDAA 110 Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA----FLSDQLVVVFGTPMF 171 ++ + +++ + DID FK IND +GH GD+V+A LSD Sbjct: 111 APLLAQAAAAGQRVVALMCDIDRFKTINDRYGHDAGDRVLARIGTILSD---FAEANGAV 167 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 + R GGEEFA +G S++EA A L K+ + ++ +T+S G+A Sbjct: 168 IARHGGEEFAGLMVGVSDEEATRYAQALCKLCSTDVAG--NDVAVPVTMSFGLATHLPGG 225 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ ++ RADQALY AK GRN VV ++E Sbjct: 226 DLAALMRRADQALYRAKDLGRNCVVQIDELE 256 >gi|119469554|ref|ZP_01612458.1| hypothetical protein ATW7_06843 [Alteromonadales bacterium TW-7] gi|119447089|gb|EAW28359.1| hypothetical protein ATW7_06843 [Alteromonadales bacterium TW-7] Length = 323 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 94/184 (51%), Gaps = 13/184 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIN 143 KEL R+ Q+S+ D L+ L N + S+L + +++ FDID FK +N Sbjct: 142 KELEDLNARLEQVSQTDSLTQLYNRGHWESTLKQEFLRTKRNGGSSALLMFDIDRFKVVN 201 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD+ + LS L GR GGEEF L + E+ A I A LR +I Sbjct: 202 DEYGHTCGDEALRHLSKLLKTTLRETDIAGRYGGEEFVVTLLDTDEKGAEIFAERLRVLI 261 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFSD 260 E S + + + +T+S G A C I AD+A+Y +KK+GRN+V ++D Sbjct: 262 EQSPV-MYKQLEVKVTVSIGFA--CFSNEFKDHERWIEAADKAMYQSKKNGRNKVTAYAD 318 Query: 261 IENN 264 I+N+ Sbjct: 319 IKND 322 >gi|119946701|ref|YP_944381.1| diguanylate cyclase [Psychromonas ingrahamii 37] gi|119865305|gb|ABM04782.1| diguanylate cyclase [Psychromonas ingrahamii 37] Length = 409 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 12/204 (5%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 +++ ++ L ++ ISL L S+L +L+ + S +D L+ L+N Sbjct: 210 WVIFNDIWLFLLFAGISLWLQVGQLSMLMKLY-------RESTVDPLTKLINRRVLFRLA 262 Query: 123 GSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 + EK S ++ FD+D FK+IND +GH VGDKV+ ++ + V R GGEE Sbjct: 263 ANDLEKQSNFCLIMFDLDRFKRINDTYGHGVGDKVLVSIAQVIQRELRQSDIVARFGGEE 322 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F A ++A + +R++I + ++ G I T S G+ ++ E + + R Sbjct: 323 FVAILPEIGLEQATRIGQRIRRMISQESVQLTDGLVIKTTSSIGVTQKRVNESLDETLKR 382 Query: 240 ADQALYVAKKSGRNRVVCFSDIEN 263 AD LY AK++GRN+VV SDI+N Sbjct: 383 ADDFLYYAKENGRNQVV--SDIDN 404 >gi|254235755|ref|ZP_04929078.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126167686|gb|EAZ53197.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 341 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 15/203 (7%) Query: 65 LVENLSLVIISITISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAF-- 118 L E L +SI L GY+ L E L +R + S +D L+ L N + F Sbjct: 141 LREGRQLNRLSI---LAEGYLQLRSLTEHTRFLRQEIDREQRKSLLDPLTQLWNRAGFHA 197 Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 + + ++++ I++ DID+FK+IND GH GD V+ + +L + Sbjct: 198 LHQHELELARASDQRIGIIYSDIDHFKRINDTLGHRAGDSVLREAASRLRAALRPEDLLA 257 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF A E ++AN +R+++E + I+ +G S+ +TISAG E Sbjct: 258 RFGGEEFVAMVQVRETTELTMIANRIRELMEATPIDC-AGTSVPVTISAGCTLAGSGEEP 316 Query: 234 STIIYRADQALYVAKKSGRNRVV 256 + RAD ALY AK++GRNRVV Sbjct: 317 EQALARADAALYDAKRAGRNRVV 339 >gi|170695111|ref|ZP_02886259.1| diguanylate cyclase [Burkholderia graminis C4D1M] gi|170139963|gb|EDT08143.1| diguanylate cyclase [Burkholderia graminis C4D1M] Length = 397 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 13/194 (6%) Query: 72 VIISITISLLLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAF-------ISSL 122 V++ ++++L+ G + G +L +S +R++ +D L+ LN AF ++ Sbjct: 192 VLLQLSLALM-GAVLGLVLLAAAMSDVIDRLTLERDLDSLTETLNRRAFERLAGRRVADR 250 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 SY L+++ FDID FK IND +GH GD V+ + L V R+GGEEF Sbjct: 251 RSY--PLTLIAFDIDNFKSINDRYGHAAGDAVLRQFAAILRAAVREKDVVARIGGEEFVL 308 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 G+ ++ A + LR ++E+S+ + ++ +T SAGIA E + ++ RADQ Sbjct: 309 LLPGADDKFAYEIVERLRTVLESSRFD-EIEATLRVTTSAGIARYRPGEDVGALLARADQ 367 Query: 243 ALYVAKKSGRNRVV 256 LY AK++GRNRVV Sbjct: 368 LLYAAKRAGRNRVV 381 >gi|87310815|ref|ZP_01092942.1| probable response regulatory protein [Blastopirellula marina DSM 3645] gi|87286572|gb|EAQ78479.1| probable response regulatory protein [Blastopirellula marina DSM 3645] Length = 312 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 87/161 (54%), Gaps = 16/161 (9%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N AF I ++ + FDID+FK+IND +GH VGDK + LS Sbjct: 140 DALTGIGNRRAFEREMDRRIHEYQRHDVPFCLTIFDIDHFKKINDQWGHDVGDKTLRVLS 199 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-- 217 + L V RLGGEEFA + + EA +++ R ++I G IH Sbjct: 200 ESLYNEVRATDMVTRLGGEEFAVIFVATQLAEALKVSHRAR-----AKIGERCGARIHDD 254 Query: 218 --ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +TIS G+AE + + T+I RAD+ALYVAK SGR+R + Sbjct: 255 MQLTISGGVAEVAPGDDLRTLINRADEALYVAKNSGRDRCL 295 >gi|162661179|gb|EDQ48693.1| predicted protein [Physcomitrella patens subsp. patens] Length = 866 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 111/210 (52%), Gaps = 18/210 (8%) Query: 62 EYILVENLSLVIISITISLLLGYIS-----GSILK---ELFISYNRISQLSRIDCLSGLL 113 E+I ++++ +V I I ++L+ S++K +L + +L +ID L+GL Sbjct: 47 EFIQIQSVFIVSIMIGHTILVRVKEFMRHLESVMKSEQQLLVERTISDKLLKIDALTGLY 106 Query: 114 NHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 NH AF L + Y L + DID FK++NDN+GH VGD V+ ++ +++ Sbjct: 107 NHKAFHEYLEALLEQCEKYQLPLQLAIIDIDNFKKVNDNYGHRVGDVVLKEVASKVMSTM 166 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 F R GGEEFA + +EA +A LR+ I +++ + P +T+S G+ Sbjct: 167 TPNDFAARYGGEEFAIIMADKTLEEAERMAEQLRERIARTELPHTVKP---VTVSIGLCN 223 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ +AD ALY AK++G+N+VV Sbjct: 224 FQQGDDKESLFRKADMALYQAKRTGKNKVV 253 >gi|300855913|ref|YP_003780897.1| membrane associated GGDEF domain-containing protein [Clostridium ljungdahlii DSM 13528] gi|300436028|gb|ADK15795.1| membrane associated GGDEF domain containing protein [Clostridium ljungdahlii DSM 13528] Length = 378 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/212 (33%), Positives = 110/212 (51%), Gaps = 17/212 (8%) Query: 64 ILVENLSLVIISITI----SLLLGYISGSILKEL---FISYNRISQLSRIDCLSGLLNHS 116 IL++N L++ + I +LLL Y ++ L F +Y + + ID L+GL N Sbjct: 151 ILIKNTQLLVQFLIIYYLNNLLLTYFVYKFMEHLSKAFEAYRTLRTEASIDFLTGLNNVR 210 Query: 117 AFISSLGSYN---------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 F SL + + LS++F DIDYFK+IND +GH GD V+ L++ L Sbjct: 211 QFNKSLHRISIAVQKKEEIQYLSLIFLDIDYFKEINDKYGHGSGDIVLKNLANILTNTCR 270 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 + R GGEEF+ L +A +A +R+ +E +IS+ +IHITIS G++ Sbjct: 271 AFDIISRNGGEEFSVLLLNCPTADAIQVAERIRQNVEAYSFHISNKTTIHITISIGVSTY 330 Query: 228 CH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258 I ++ AD ALY AK GRN+++ + Sbjct: 331 PSLTNNIDNLLSDADTALYKAKNEGRNKIILY 362 >gi|296534437|ref|ZP_06896877.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957] gi|296265236|gb|EFH11421.1| GGDEF domain protein [Roseomonas cervicalis ATCC 49957] Length = 509 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 8/165 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFIS-SLGSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + + + D L+GL N +F++ + S E +++ D+D+FK +ND+ GH GD Sbjct: 334 LRRQAETDALTGLANRGSFLARAAASLQEHAAAARPFTLLAIDLDHFKAVNDSAGHAAGD 393 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +++ V GRLGGEEFA A + EA ILA LR+ + + + Sbjct: 394 TVLRLAAERCAAVLRQGDLFGRLGGEEFAVALPCAGAAEALILAERLRQALATIDLPRGA 453 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P +T S GIAE R + ++ ++ RAD ALY AK +GR+RV Sbjct: 454 APEGRLTASFGIAEARPGESDLAPLLRRADLALYSAKHAGRDRVT 498 >gi|254503193|ref|ZP_05115344.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222439264|gb|EEE45943.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 410 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 17/208 (8%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P L Y+++ +++VI+S + +++ +I + R + + D L+GL N Sbjct: 189 PIQPLAYLVLLMVAIVIVSAS------FVAMAIER----IQVRFEKQALTDSLTGLANRR 238 Query: 117 AFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 AFI + + + +++ DID+FK IND FGH GD+V+A + +F + Sbjct: 239 AFIKAAKRWFSSTAQTQAFTLILIDIDHFKSINDQFGHTAGDRVLASFGTAMKSIFPRAI 298 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 GR+GGEEFA + + +A L LR++I I S S IT+SAG+ Sbjct: 299 PPGRIGGEEFAVLLPETEKADAVHLLGRLREVISQCAICPKSEAS-GITVSAGLITATTS 357 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCF 258 ADQ LY AKK+GRNR V Sbjct: 358 HDFEQAFDHADQLLYEAKKTGRNRHVAL 385 >gi|114569040|ref|YP_755720.1| diguanylate cyclase [Maricaulis maris MCS10] gi|114339502|gb|ABI64782.1| diguanylate cyclase [Maricaulis maris MCS10] Length = 384 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 88/159 (55%), Gaps = 9/159 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N AF + + + ++ ++V FDID+FKQ+ND GH VGD V+ ++ Sbjct: 224 DHLTGLPNRRAFEALVNDHFEMAPSGEQQAALVVFDIDHFKQVNDGHGHDVGDAVLQHVA 283 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V RLGGEEF A E +A+ +R+ + + + G + +T Sbjct: 284 TVLQAAIRDTDHVARLGGEEFVALIHARPEASVHDIADRIRQAVADRPF-VLDGREVSVT 342 Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257 ISAG+ E +P ++++ RADQALY AK +GRN+VV Sbjct: 343 ISAGLVEVSGGQPTLASLFKRADQALYKAKDAGRNQVVT 381 >gi|253997291|ref|YP_003049355.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera mobilis JLW8] gi|253983970|gb|ACT48828.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera mobilis JLW8] Length = 548 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++Q + ID L+ L N F +S Y + +++ DID+FK+IND+ GH +GD Sbjct: 381 LNQKAHIDYLTELNNRGHFMEQAEKELSRSQRYQKDMAMFMMDIDFFKKINDSHGHKIGD 440 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+D +GR+GGEEFA ++ EA +A LR + +S++ + Sbjct: 441 IVLKKLADVCRQTLREVDIIGRIGGEEFAILLPETNRAEALEVAERLRLAVADSKVPMKD 500 Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 G + T+S G++ + I ++ RADQALY AK+SGRNRV Sbjct: 501 GLPVQYTVSIGVSSVASADDNIDMLLSRADQALYQAKQSGRNRV 544 >gi|261210921|ref|ZP_05925211.1| GGDEF family protein [Vibrio sp. RC341] gi|260839896|gb|EEX66496.1| GGDEF family protein [Vibrio sp. RC341] Length = 958 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 24/207 (11%) Query: 71 LVIISITISLLLGYISGSILKELFI-------------SYNRISQLSRIDCLSGLLNHSA 117 +++++ +SL++ I +EL++ + +LS+ D L+GL N A Sbjct: 743 MLVLAFAVSLVMWRIRALKRRELYLVEQVALQTHKLRLQAEKFEKLSKEDELTGLANRRA 802 Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 F S + +++SI DID+FKQIND + H +GD+ I +S QL+ G Sbjct: 803 FDLYLKQAFSRTDNPPQQVSIALLDIDHFKQINDRYSHIIGDQAIIAVSQQLLEYVGDKK 862 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCH 229 V R GGEEF G + + + LR+ IE Q++ SS P + +T+S G A+ Sbjct: 863 RVARWGGEEFTILFFGEPKNAWSYFEH-LRRNIE--QMDFSSIVPGLAVTVSVGFADGSQ 919 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256 E + + AD AL AKK GRNRVV Sbjct: 920 AENYESALKLADHALLTAKKLGRNRVV 946 >gi|194014703|ref|ZP_03053320.1| ABC superfamily ATP binding cassette transporter, binding protein [Bacillus pumilus ATCC 7061] gi|194013729|gb|EDW23294.1| ABC superfamily ATP binding cassette transporter, binding protein [Bacillus pumilus ATCC 7061] Length = 361 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 9/158 (5%) Query: 107 DCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+G+LN + AF ++S+++ DIDYFK IND +GH GD V+ + Sbjct: 195 DFLTGVLNKRKFDEVLNDAFSMKFKQPIHQISLIYLDIDYFKSINDQYGHHEGDMVLKEI 254 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +L+ + ++GR+GGEEFA + ++ +A LR+ I + I + +G SIHI Sbjct: 255 GKRLMKNTRSSDYIGRIGGEEFAVLLPNCTVEKTWQIAERLRRKIADQPIYLQNGMSIHI 314 Query: 219 TISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 T+S G A P I + ADQ LY AK+SGRN+V Sbjct: 315 TVSLGCAYFPGTSPNIKQLPIIADQELYKAKQSGRNQV 352 >gi|116873346|ref|YP_850127.1| GGDEF domain-containing protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742224|emb|CAK21348.1| GGDEF domain protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 378 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 11/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N F + + LSI+ DIDYFK++ND +GH VG+ Sbjct: 205 LQQSTILDPLTGLTNFRHFDKTFETAFHHATLKKSNLSIIIIDIDYFKRVNDTYGHLVGN 264 Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V++ S L+ + F + R+GGEEFA + E LA +R+ +E +I I+ Sbjct: 265 SVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIEIPIA 324 Query: 212 SGPSIHITISAGIAE-RCHKEPIS-TIIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA H P + +++ ADQALY AK++GRN+V Sbjct: 325 ASGSV-ITISAGIANYDGHNYPTADELLHAADQALYKAKRNGRNQV 369 >gi|153839620|ref|ZP_01992287.1| putative sensory box/ggdef family protein [Vibrio parahaemolyticus AQ3810] gi|260361492|ref|ZP_05774539.1| diguanylate cyclase [Vibrio parahaemolyticus K5030] gi|260878177|ref|ZP_05890532.1| diguanylate cyclase [Vibrio parahaemolyticus AN-5034] gi|260895463|ref|ZP_05903959.1| diguanylate cyclase [Vibrio parahaemolyticus Peru-466] gi|260903328|ref|ZP_05911723.1| diguanylate cyclase [Vibrio parahaemolyticus AQ4037] gi|149746859|gb|EDM57847.1| putative sensory box/ggdef family protein [Vibrio parahaemolyticus AQ3810] gi|308088054|gb|EFO37749.1| diguanylate cyclase [Vibrio parahaemolyticus Peru-466] gi|308094113|gb|EFO43808.1| diguanylate cyclase [Vibrio parahaemolyticus AN-5034] gi|308109540|gb|EFO47080.1| diguanylate cyclase [Vibrio parahaemolyticus AQ4037] gi|308112849|gb|EFO50389.1| diguanylate cyclase [Vibrio parahaemolyticus K5030] Length = 329 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 93/167 (55%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QLS D L+GLLN AFIS+L + ++ LS + DID+FK IND+ GH Sbjct: 141 QRLKQLSETDALTGLLNRRAFISNLDNAIIQHTKRSQTLSCLMIDIDHFKDINDSVGHFS 200 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI ++ V F+GRLGGEEFA ++ +A +A +R+ I+ + ++ Sbjct: 201 GDHVITRIAHVCQGVIRGSDFIGRLGGEEFAVILTDTNAIQAYEVAERIRQAIQATICHV 260 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I T+S G+AE + ++ AD+A+Y +K SGRN+V Sbjct: 261 DD-VEITTTVSIGVAELNSQQSNAKELLIEADKAMYYSKHSGRNQVT 306 >gi|144899221|emb|CAM76085.1| GGDEF domain [Magnetospirillum gryphiswaldense MSR-1] Length = 578 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G N F+++ G+ Y L+++ D+DYFK IND GH GD Sbjct: 407 LRRLATTDSLTGAFNRRHFLAAAGTELERANRYGNPLTLLMLDVDYFKSINDAHGHGTGD 466 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + L + L +GRLGGEEFA + A I A LR + + ++++ Sbjct: 467 DALRRLVEGLRHALRDIDVIGRLGGEEFAVLLPETGMAGALITAERLRAQVADLRLDLPD 526 Query: 213 GPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + T+S GI A R + ++ RAD+ALY AK GRNRV Sbjct: 527 GGQLAFTVSIGIAAPRAEDGSVEAVLARADKALYRAKDEGRNRV 570 >gi|90423352|ref|YP_531722.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gi|90105366|gb|ABD87403.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris BisB18] Length = 456 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 17/178 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 ++ EL R++ L+ D L+GL N F +L S Y S++ FD+D FK Sbjct: 272 AMAAELRDRAKRLAVLATTDRLTGLYNRLKFDETLASEIARAKRYKMPFSLIMFDVDLFK 331 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND +GHP+GD+V+ LSD + R GGEEFA GSS EA ++A LR Sbjct: 332 TVNDRYGHPIGDRVLVGLSDLASSHLRETDMLARWGGEEFALLVTGSSRMEAYVVAEKLR 391 Query: 201 KIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I + Q+ ++ S G+ E + ++ RAD ALY AK +GRNRV Sbjct: 392 TAIAHVAFDQVG-------RVSCSFGVTEYRDGDIPELMVARADGALYQAKLNGRNRV 442 >gi|325292624|ref|YP_004278488.1| diguanylate cyclase [Agrobacterium sp. H13-3] gi|325060477|gb|ADY64168.1| diguanylate cyclase [Agrobacterium sp. H13-3] Length = 415 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 9/166 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+ D L+G+LN + ++ +++ FDID+FK+IND +GH G Sbjct: 211 RLHRLAMTDHLTGVLNRRGLLEEFEHIKKRSPGSSRYVALALFDIDHFKKINDKYGHQSG 270 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ + V G R+GGEEFA A S LA +R + S+I+ + Sbjct: 271 DAVLVHFCNMAQRVIGERGLFVRMGGEEFALVAEVESPSSTVTLAEAIRSNLRLSKIS-A 329 Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 G +I +T S GI+E K+ +S ++ AD+ALY AKK+GRNR V Sbjct: 330 RGENIEVTTSVGISEAMIKDADLSVMMTEADRALYAAKKAGRNRTV 375 >gi|152991219|ref|YP_001356941.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] gi|151423080|dbj|BAF70584.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] Length = 350 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 96/177 (54%), Gaps = 13/177 (7%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNE----KLSIVFFDIDYFK 140 + +EL + N+ + D L+ L N F L +NE S++ DID FK Sbjct: 178 LRRELRDTKNK----AEFDYLTELFNRRKFEEYFHKLLKEFNEGEGKPFSLIILDIDDFK 233 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 QIND +GH +GD+V+ LS + + R+GGEEFA + EA +A LR Sbjct: 234 QINDTYGHLLGDEVLKNLSSLIKTFLHSAHIPARIGGEEFAILLPETPLDEAKTIAERLR 293 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 K +EN I I+ G ++ T+S G+A+ + + +++ RAD+ALY AK++G+N V+ Sbjct: 294 KTVENRTIPIAEG-DLNFTVSIGVAQVQKGDTMDSLLKRADEALYEAKRNGKNMVIA 349 >gi|322616865|gb|EFY13773.1| hypothetical protein SEEM315_15849 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618104|gb|EFY14996.1| hypothetical protein SEEM971_05223 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625775|gb|EFY22594.1| hypothetical protein SEEM973_09022 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626225|gb|EFY23035.1| hypothetical protein SEEM974_05820 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633831|gb|EFY30571.1| hypothetical protein SEEM201_02229 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638985|gb|EFY35678.1| hypothetical protein SEEM202_10223 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322644190|gb|EFY40735.1| hypothetical protein SEEM054_02762 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649513|gb|EFY45945.1| hypothetical protein SEEM675_03416 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655420|gb|EFY51728.1| hypothetical protein SEEM965_14143 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660824|gb|EFY57055.1| hypothetical protein SEEM19N_10368 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662880|gb|EFY59087.1| hypothetical protein SEEM801_18907 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668064|gb|EFY64223.1| hypothetical protein SEEM507_21371 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674175|gb|EFY70269.1| hypothetical protein SEEM877_13603 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675471|gb|EFY71545.1| hypothetical protein SEEM867_03537 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683114|gb|EFY79130.1| hypothetical protein SEEM180_11167 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686808|gb|EFY82786.1| hypothetical protein SEEM600_19160 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195300|gb|EFZ80480.1| hypothetical protein SEEM581_08859 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199193|gb|EFZ84288.1| hypothetical protein SEEM501_00435 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202994|gb|EFZ88027.1| hypothetical protein SEEM460_02776 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207449|gb|EFZ92397.1| hypothetical protein SEEM020_07058 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209938|gb|EFZ94850.1| hypothetical protein SEEM6152_06543 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217432|gb|EGA02151.1| hypothetical protein SEEM0077_21207 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220568|gb|EGA05019.1| hypothetical protein SEEM0047_12196 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226618|gb|EGA10820.1| hypothetical protein SEEM0055_15959 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231454|gb|EGA15567.1| hypothetical protein SEEM0052_14571 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235895|gb|EGA19974.1| hypothetical protein SEEM3312_13539 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240464|gb|EGA24507.1| hypothetical protein SEEM5258_10831 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245357|gb|EGA29357.1| hypothetical protein SEEM1156_16481 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246723|gb|EGA30695.1| hypothetical protein SEEM9199_07616 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253578|gb|EGA37406.1| hypothetical protein SEEM8282_15393 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257716|gb|EGA41399.1| hypothetical protein SEEM8283_00602 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260379|gb|EGA43995.1| hypothetical protein SEEM8284_20528 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266830|gb|EGA50316.1| hypothetical protein SEEM8285_18914 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269036|gb|EGA52492.1| hypothetical protein SEEM8287_03697 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 376 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 13/199 (6%) Query: 71 LVIISITISLLLG-YISGSILKELFISYN-------RISQLSRIDCLSGLLNHSAFISSL 122 LV +++T L+ G +I E ++ Y R+ ++ D L+G N + S L Sbjct: 177 LVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFL 236 Query: 123 GS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178 G E +++ D+DYFK ND++GH GD +A ++ + TP V R GGE Sbjct: 237 GDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPADLVARYGGE 296 Query: 179 EFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 EF SS EAA++A ++ + E + + +S S +T+S GI + ++ II Sbjct: 297 EFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTAGDTVTGII 356 Query: 238 YRADQALYVAKKSGRNRVV 256 RAD+ALY AK+ GRNR V Sbjct: 357 ARADEALYRAKQQGRNRWV 375 >gi|258621551|ref|ZP_05716584.1| GGDEF family protein [Vibrio mimicus VM573] gi|258586169|gb|EEW10885.1| GGDEF family protein [Vibrio mimicus VM573] Length = 978 Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + +LS+ D L+GL N AF S + +++SI DID+FKQIN Sbjct: 796 QKLRFQAEKFERLSKEDELTGLANRRAFDVYLKQAFSRVEHPGQQVSIGLLDIDHFKQIN 855 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H +GD+ I +S QL+ V R GGEEF +G +EA +LR I Sbjct: 856 DRYSHIIGDQAIVAVSQQLLKYVRDKTRVARWGGEEFTILYVGDP-KEAWSYFEELRCTI 914 Query: 204 ENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q++ S+ P + +T+S G A+ E +++ AD AL AKK GRNRVV Sbjct: 915 E--QVDFSTVAPGLTVTVSVGFADSQQAESYESVLKLADHALLTAKKLGRNRVV 966 >gi|194366180|ref|YP_002028790.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] gi|194348984|gb|ACF52107.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] Length = 479 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 68/191 (35%), Positives = 101/191 (52%), Gaps = 17/191 (8%) Query: 78 ISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I +LGY S+L ++ I R + L+R D L+GL N F SLGS + + Sbjct: 276 IGAMLGYALRSVLTQVEIQRQRDELEALARRDPLTGLGNRRNFDESLGSAHRRARRQGLG 335 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALG 186 L+++ DID+FK++ND +GHP GD+ + ++ L + G + R GGEEF AA Sbjct: 336 LAVLMIDIDHFKRLNDTYGHPEGDRRLRAVAGILDGCLQRGDDLLA-RYGGEEFIAALPS 394 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQAL 244 A L LR +E + + + +TIS G+A + +E ++ RADQAL Sbjct: 395 PDITHALSLGERLRAAVETAGLPAAEAV---VTISIGVAWQAARENGDPRDLVDRADQAL 451 Query: 245 YVAKKSGRNRV 255 Y AK +GRNRV Sbjct: 452 YRAKHAGRNRV 462 >gi|95929052|ref|ZP_01311797.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95134953|gb|EAT16607.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 825 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 90/162 (55%), Gaps = 7/162 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGD 152 +S+L+R D L+GL N F+ SL NE ++ + D+D+FKQ+ND +GH VGD Sbjct: 652 LSRLARTDPLTGLHNRRYFMEFAQQYISLAHRNETEMQFLSLDLDHFKQVNDRYGHQVGD 711 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ + LV + + + R GGEEF ++++ A + A + + I + + + Sbjct: 712 DILKLFATTLVPLLRSTDLLARTGGEEFIICLQNTTQEGANVFARKIIETIRDLRYRTAE 771 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 ++ T+S GIA E + ++ R+D ALY AKK+GR+R Sbjct: 772 DETVTFTVSIGIASLFRGENLEDVLCRSDHALYRAKKNGRDR 813 >gi|255606612|ref|XP_002538597.1| protein with unknown function [Ricinus communis] gi|223511408|gb|EEF23786.1| protein with unknown function [Ricinus communis] Length = 248 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 101/182 (55%), Gaps = 8/182 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYN---EKLSIVFFDIDYFKQI 142 +++L ++S++ RID L+G+LN AF + + Y E LS+ DID FK + Sbjct: 67 MEKLQEELQQLSEVVRIDQLTGVLNRRGMDEAFSTEIARYRRSGELLSVALLDIDNFKML 126 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GD + L+ + V R+GGEEF ++ +EA + + L++ Sbjct: 127 NDQHGHAAGDSALKHLASVVKRAVRPTDIVTRMGGEEFVVILPNTNLEEAVVTMSRLQRA 186 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + + + + + IT SAG+A ++ +++I+ RADQA+Y+AKK G+NRV+ D++ Sbjct: 187 L-TKEYFLGNNQKLLITFSAGVALFKTEDDVNSILSRADQAMYLAKKRGKNRVMTEVDLQ 245 Query: 263 NN 264 N Sbjct: 246 AN 247 >gi|146283962|ref|YP_001174115.1| two-component response regulator [Pseudomonas stutzeri A1501] gi|145572167|gb|ABP81273.1| probable two-component response regulator [Pseudomonas stutzeri A1501] Length = 531 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L N LS DID+FKQ+ND FGHP+GD+VI L+ Sbjct: 374 DSLTGLYNHTHSLQLLEDARFRARRDNRPLSFAMLDIDHFKQVNDTFGHPMGDRVIKSLA 433 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 L +GR GGEEFA + + A + N++R+ ++I + P + Sbjct: 434 LFLKQRLRKTDHIGRYGGEEFAVVLPDTPAEAACKVLNEIRQRF--AEIRFPAQPRDLSC 491 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T S GI E + T+ +AD+ALY AK +GRNRV Sbjct: 492 TFSCGITELTADAEVKTLTQQADEALYRAKHAGRNRV 528 >gi|115524865|ref|YP_781776.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] gi|115518812|gb|ABJ06796.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] Length = 418 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 82/157 (52%), Gaps = 9/157 (5%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+GL N F I + ++++ FDIDYFK IND FGHP GD+++ Sbjct: 220 IDPLTGLFNRRGFTEATTRMIEREAAAGRPVTVMIFDIDYFKSINDRFGHPAGDELLKLF 279 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + GR+GGEEF AA L S EA + A +R E I + + P + Sbjct: 280 ATLITSSLRITDLSGRIGGEEF-AALLPCSIDEALVAAERVRWSFETCGIVVDNDP-VAT 337 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+A + + ++ AD ALY AK+ GRNRV Sbjct: 338 TVSIGVAGGPARTELDVLLAAADTALYQAKRGGRNRV 374 >gi|327482289|gb|AEA85599.1| two-component response regulator [Pseudomonas stutzeri DSM 4166] Length = 531 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L N LS DID+FKQ+ND FGHP+GD+VI L+ Sbjct: 374 DSLTGLYNHTHSLQLLEDARFRARRDNRPLSFAMLDIDHFKQVNDTFGHPMGDRVIKSLA 433 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 L +GR GGEEFA + + A + N++R+ ++I + P + Sbjct: 434 LFLKQRLRKTDHIGRYGGEEFAVVLPDTPAEAACKVLNEIRQRF--AEIRFPAQPRDLSC 491 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T S GI E + T+ +AD+ALY AK +GRNRV Sbjct: 492 TFSCGITELTADAEVKTLTQQADEALYRAKHAGRNRV 528 >gi|296271637|ref|YP_003654268.1| 7TM domain sensor diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296095812|gb|ADG91762.1| 7TM domain sensor diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] Length = 580 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 9/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143 KEL S ++ L+ D LS LLN + IS N +S++ FDID FK IN Sbjct: 403 KELEESKKKLEILANKDFLSDLLNRRPLFEISNRLISLAKRENTTISVLLFDIDKFKAIN 462 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD+VI S L V R+GGEEF ++ ++A I+A ++RK + Sbjct: 463 DTYGHKEGDEVIKAFSKILKKDRRNSDIVARIGGEEFVILLPSTTHKDAFIIAEEIRKEV 522 Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+ + +I T+S G++ R + +I RAD+ LY+AK +GRN VV Sbjct: 523 ETFQVK-TKDSTICFTVSCGVSSLRKEDNNMDELIARADKRLYMAKNNGRNVVV 575 >gi|307726536|ref|YP_003909749.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003] gi|307587061|gb|ADN60458.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003] Length = 312 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 11/203 (5%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122 L + +V + +TIS + ++S + +E + ++ + + D L+G+ N F + L Sbjct: 113 LTRDREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYADRDGLTGIANRRYFEARLLD 170 Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 Y +S++ FD+D+FK+IND FGH VGD V+ ++ ++ V GR GG Sbjct: 171 EYTRWQRYGGDMSVLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTI 236 EEFA + ++A +A +R+ I ++ + + G S+ +T S G A R + Sbjct: 231 EEFALLLPCTPLEDAMRVAEKIRRTIADTPVEV-QGTSVPVTASVGGAAARAGLPAYDVL 289 Query: 237 IYRADQALYVAKKSGRNRVVCFS 259 I AD ALY AK+ GRNR V + Sbjct: 290 INEADAALYSAKRQGRNRCVALT 312 >gi|144899153|emb|CAM76017.1| GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 392 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 104/213 (48%), Gaps = 16/213 (7%) Query: 60 GLEYILVENLSL-----VIISITISLLLGYISGSI----LKELFISYNRISQLSRIDCLS 110 G+ +++ EN V +S T+ + L +S I L+E S + L+ +D L+ Sbjct: 174 GVAWVMYENPQAAPAVAVWLSYTLMIALFCLSAQIYGLPLQEFTRSERTLEHLASVDPLT 233 Query: 111 GLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 +LN +F + S S S++ D+D FK IND GHP GD+VI + L Sbjct: 234 EVLNRRSFFAKAQGLWQSHQSDGRPFSVLMLDLDRFKAINDRHGHPTGDRVIVAFARLLR 293 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 +GR+GGEEFA G + +A +A +R E ++ G + +T+S G Sbjct: 294 DAMRHDDLLGRMGGEEFAIILPGVATAQALEVAERIRAASEAVEVLSDDGFRVRLTVSIG 353 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +A + ++ RAD ALY AK GRNRVV Sbjct: 354 LALGDGATSLDDLMKRADAALYQAKDQGRNRVV 386 >gi|78776812|ref|YP_393127.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78497352|gb|ABB43892.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM 1251] Length = 611 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/167 (37%), Positives = 85/167 (50%), Gaps = 15/167 (8%) Query: 99 RISQLSRIDCLSGLLNHSA---------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + +L+ ID L+G N F+ S N LS++ DID+FK +ND +GH Sbjct: 449 ELERLASIDKLTGAYNRRMIDEFMKKEIFLHVRDSKN--LSLIMADIDHFKLVNDTYGHQ 506 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V++ + + GR GGEEF +S Q+A ILA +R+ IEN Sbjct: 507 AGDAVLSDVGRIISSTIRKSDIFGRYGGEEFIVICPNTSSQQALILAQKIREEIENFHF- 565 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 H TIS G+A + + II RAD ALY+AKK GRNRVV Sbjct: 566 ---AEVGHKTISLGVATLIANDEVENIIKRADDALYIAKKEGRNRVV 609 >gi|269962456|ref|ZP_06176805.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832752|gb|EEZ86862.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 329 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 94/168 (55%), Gaps = 9/168 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +LS D L+G+LN AF++SL ++ L+ V DID+FK+IND GH G Sbjct: 142 RLKELSETDELTGVLNRRAFLASLDRSLSSHSHPSQPLTCVMIDIDHFKEINDQVGHFSG 201 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI ++ F+GRLGGEEFA +S +A +A +R+ I+N+ + Sbjct: 202 DQVINHVAKICQRAIRGTDFIGRLGGEEFAVILANTSAIQAYEVAERIRQAIQNAPCKV- 260 Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 G I T+S G+AE + ++ AD+A+Y +K SGRN+V + Sbjct: 261 DGIEISTTVSIGVAEYDGQVLSAKELMVNADKAMYYSKHSGRNQVTLY 308 >gi|289208563|ref|YP_003460629.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] gi|288944194|gb|ADC71893.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] Length = 336 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 17/164 (10%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+G+ N F ++ YN LS++F D+DYFK++ND +GH GD + Sbjct: 168 RLASTDALTGVWNRQKFKTEAEHEVARAERYNLPLSLIFLDLDYFKEVNDRYGHATGDAI 227 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + +L +GR GGEEF + AA+LA LR+ I ++ P Sbjct: 228 LREMCQRLQACLRESDRLGRWGGEEFLILVPHADSDRAALLAEKLRQAIADT-------P 280 Query: 215 SIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + H ++IS G+ R + + ++ +AD ALY AK GRNRV Sbjct: 281 AAHGQPMSISLGVVSREPGDALEDLVRKADAALYRAKARGRNRV 324 >gi|117618610|ref|YP_855243.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560017|gb|ABK36965.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 321 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 92/172 (53%), Gaps = 5/172 (2%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 +KEL + N +L+ D L+ LLN AF I SL + S++ DID FK ND + Sbjct: 146 IKELREALNETRKLANEDALTSLLNRRAFDLEIESLIRSKQPFSLILSDIDRFKSFNDEY 205 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH +GD+V+ S +L + RLGGEEFA S + +A LR+ IE Sbjct: 206 GHLLGDQVLRAFSKRLRETCKEGVTAYRLGGEEFALLVPMRSLALSRQMAESLRRAIEKM 265 Query: 207 QI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I + SG I HIT S G+ E +E +++ R D+ LY AK+ GRNRV+ Sbjct: 266 SILDRKSGRRIDHITASFGVGEYSGQETGDSLVERTDKLLYKAKELGRNRVM 317 >gi|297584952|ref|YP_003700732.1| diguanylate cyclase [Bacillus selenitireducens MLS10] gi|297143409|gb|ADI00167.1| diguanylate cyclase [Bacillus selenitireducens MLS10] Length = 354 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 18/229 (7%) Query: 40 ATVIFIANIFLFYIGLT--PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97 + +I+I N LF++ + P E L NLS+ + I + I + EL Sbjct: 129 SLMIWIFNFSLFFVYWSDFPIPIREQALHYNLSIFVYIIFLYFSRKIIHNNAKNEL---- 184 Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-SYNEKL---SIVFFDIDYFKQINDNFGHPVGDK 153 +S+L+ D L+G+ N L SY K+ S++ DIDYFK++ND GH +GDK Sbjct: 185 --LSELAYKDELTGVANRRQIYEWLHLSYKNKVKPVSVIMLDIDYFKKVNDIHGHLIGDK 242 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ L+ + ++GR GGEEF + + +Q A LA LR+ +E+ I Sbjct: 243 VLIELTQLIENELSDQSYLGRWGGEEFIILSYQTKDQ-AKKLAETLREQVESYSF-IEDH 300 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC-FSDI 261 P ITIS+G+ E + + +++ RAD+ LY AK++GRNRV F D+ Sbjct: 301 P---ITISSGVDEMQQDDTVDSLVNRADKLLYQAKETGRNRVCSDFQDL 346 >gi|152998825|ref|YP_001364506.1| diguanylate cyclase [Shewanella baltica OS185] gi|151363443|gb|ABS06443.1| diguanylate cyclase [Shewanella baltica OS185] Length = 486 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 13/191 (6%) Query: 74 ISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128 +S+ ++L + +IS L Y R + ++ D L+G N F +K Sbjct: 297 LSLMVTLGILFISNMTLGR----YQRKLEVMASTDKLTGAANRQVFDEYFRQALDKAKLA 352 Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 +SI+ DID+FK++ND++GH +GD V+ +++ L + R GGEEF Sbjct: 353 QSPISILLLDIDHFKKVNDSYGHGIGDLVLKTMTNMLRGALQQEDILCRWGGEEFLILLP 412 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 G AA LA +R++I +I ++ G I IT S G+AE +EP +I RAD ALY Sbjct: 413 GMDLTRAAELAEQIRELIFQREIKVN-GLHISITASIGVAEHQAQEPAEDLIKRADLALY 471 Query: 246 VAKKSGRNRVV 256 AK++GRN+VV Sbjct: 472 QAKEAGRNQVV 482 >gi|119476529|ref|ZP_01616880.1| GGDEF domain protein [marine gamma proteobacterium HTCC2143] gi|119450393|gb|EAW31628.1| GGDEF domain protein [marine gamma proteobacterium HTCC2143] Length = 331 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 11/209 (5%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLN 114 F G Y L L+I IT++ L SI K+ + + QL+R D L+ L N Sbjct: 116 FGGANYETAFKLRLIIAFITVTFLAACYEYSIEQSYKDTLQASEQFEQLARTDQLTKLCN 175 Query: 115 HSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 ++ + + +SI+ D+D+FK++ND +GH GD V+ L++ + Sbjct: 176 RRGALTVIEQEQRRMSRNKQAMSIILCDVDHFKKVNDQYGHNTGDAVLISLAETFTQLIR 235 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 + R GGEEF +S + A IL+ + +++++ I++ G I +T+S G+ E Sbjct: 236 KQDTIARWGGEEFLFVLPETSAENAYILSQKIHQVLQDQLIDV-EGIKIAVTVSMGVTEM 294 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVV 256 + II +AD+ LY AK++GRN+ + Sbjct: 295 HGNQAFDEIINQADKHLYEAKRAGRNQTM 323 >gi|254506607|ref|ZP_05118748.1| sensor protein [Vibrio parahaemolyticus 16] gi|219550480|gb|EED27464.1| sensor protein [Vibrio parahaemolyticus 16] Length = 321 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/177 (36%), Positives = 90/177 (50%), Gaps = 15/177 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDN 145 L S ++S LSR D L+ L N + + L E S+V FDID+FK++ND Sbjct: 143 LMDSNQKLSDLSRTDGLTQLFNRRYWETCLMKEYESCKISGAVSSLVIFDIDHFKRVNDT 202 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH VGD VI +++L T GR GGEEF G+ +A LRK IE+ Sbjct: 203 YGHTVGDHVIRHTANELRKASRTSDVCGRYGGEEFTVLLPGTCANQALYFTERLRKKIES 262 Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVVCF 258 S + G ++ TIS GI C P + + AD+ALY +K++GRNR F Sbjct: 263 SIVEC-EGYNVKYTISLGI---CEISPYQSNHLNWLEHADKALYFSKETGRNRSTVF 315 >gi|298529260|ref|ZP_07016663.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] gi|298510696|gb|EFI34599.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] Length = 365 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSA---FISSLG----SYNEKLSIVFFDIDYFKQIN 143 ++ I N + +L+ D L+GL N A F+ Y K+S++ D+D FKQ+N Sbjct: 195 RDALIWNNSLQELASTDMLTGLANRRAAEDFLEKQAYANRRYGRKVSVIMADVDLFKQVN 254 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD V+ L L V R GGEEF A QEA LA R I Sbjct: 255 DKYGHSRGDMVLVELGRILRNSLRETDLVARWGGEEFLIVAPEIDMQEAKELAERCRCAI 314 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + Q+ I++T+S G+ E K+ + T++ RAD LY AK SGRN +V Sbjct: 315 ASRQV-----AGINLTMSFGVTELREKDSVDTVLSRADNLLYKAKSSGRNLIVA 363 >gi|149910444|ref|ZP_01899085.1| sensory box/GGDEF family protein [Moritella sp. PE36] gi|149806503|gb|EDM66474.1| sensory box/GGDEF family protein [Moritella sp. PE36] Length = 620 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 101/185 (54%), Gaps = 11/185 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQ 141 I EL + + +LS ID L+ + N F S L Y +++S++F D+D FK Sbjct: 421 IEHELEQAIEKFDELSSIDELTKIANRRTFDSKLQHYWSTHHREVKEMSLLFCDVDSFKL 480 Query: 142 INDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 NDN+GHP+GD V+A ++ + V V R GGEEFA + E+ A LA + Sbjct: 481 YNDNYGHPMGDTVLANIAQVMDEQVHRGADLVARYGGEEFAVILPNTDEEGAIRLAIKII 540 Query: 201 KIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257 +EN I + S + H+T+S G+A C ++ S ++ AD+ALY+AK++GRN+ Sbjct: 541 AAVENLAIEHTHSKAAKHVTLSIGVATMCPEDESSEAQLLENADKALYLAKENGRNQYCV 600 Query: 258 FSDIE 262 + D E Sbjct: 601 YRDEE 605 >gi|283850974|ref|ZP_06368259.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] gi|283573620|gb|EFC21595.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] Length = 427 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 11/164 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+G N F I G Y E LS++ FDID FK +ND +GH GD Sbjct: 240 LTELAVTDQLTGAYNRLKFNQVMEHEIKRTGRYAEPLSVIMFDIDRFKVVNDTYGHAAGD 299 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ L+ ++ ++ R GGEEF AA + +AA+LA LR ++ + Sbjct: 300 DMLRELTRRVQAAIRAVDWLFRYGGEEFVVAAPHTGRAQAAVLAEKLRALVAGAPFPH-- 357 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +IS G+ E E + ++ R D ALY AK SGRNRVV Sbjct: 358 --GIAGSISLGVTELAPGETVEELMQRVDAALYEAKNSGRNRVV 399 >gi|291296842|ref|YP_003508240.1| diguanylate cyclase [Meiothermus ruber DSM 1279] gi|290471801|gb|ADD29220.1| diguanylate cyclase [Meiothermus ruber DSM 1279] Length = 351 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 91/175 (52%), Gaps = 11/175 (6%) Query: 88 SILKELFISYNR----ISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFK 140 +I+K+ NR + L+R D L+GL N S + + L +V DID FK Sbjct: 176 AIVKDQLALANRQVEEMHALARTDPLTGLPNRLALSELLEEASQHMHGLYLVLLDIDRFK 235 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 QIND FGH GD+V+ ++ +L V +GR GGEEF G S+Q+ LR Sbjct: 236 QINDRFGHAAGDEVLREVARRLRVSMRKEDVLGRWGGEEFMILMRGESQQDVPAAVERLR 295 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I + GP ++ S G+AE + I ++ RAD+ALY AK+ GRNRV Sbjct: 296 EDIAFWPFKL-VGP---VSASFGVAEGHIGDSIHALVERADRALYEAKRLGRNRV 346 >gi|159184686|ref|NP_354267.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] gi|159139978|gb|AAK87052.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] Length = 415 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 16/202 (7%) Query: 75 SITISLLLGY-----ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128 +++IS +LG+ IS I+ E + R+ +L+ D L+G+LN + ++ Sbjct: 184 ALSISGMLGFTAIIMISAKIIME--DTEIRLHRLAMTDHLTGVLNRRGLLEEFEHIKKRS 241 Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 +++V FDID+FK+IND +GH GD V+ + V G R+GGEEFA Sbjct: 242 HGSDRYVALVLFDIDHFKKINDRYGHQSGDAVLVHFCNIAQRVIGERGLFVRMGGEEFAL 301 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRAD 241 A S LA +R + S+I + +I +T S GI+E K+ +S ++ AD Sbjct: 302 VAEVESPSSTVTLAEAIRSNLRLSKIT-ARNEAIKVTTSVGISEAMIKDADLSVMMTEAD 360 Query: 242 QALYVAKKSGRNRVVCFSDIEN 263 +ALY AKK+GRNR V + N Sbjct: 361 RALYAAKKAGRNRTVIHVNSAN 382 >gi|320085625|emb|CBY95403.1| Cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 353 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 30/267 (11%) Query: 19 LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67 + S+ + F++++ + F+ ++ ++ + + Y L P + L +L Sbjct: 87 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVQLN 145 Query: 68 ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114 N+ +++ +T++ +L Y I E ++ Y R+ ++ D L+G N Sbjct: 146 QYMNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 205 Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170 + S LG E +++ D+DYFK ND++GH GD +A ++ + TP Sbjct: 206 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPAD 265 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229 V R GGEEF SS EAA++A ++ + E + + +S S +T+S GI Sbjct: 266 LVARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTA 325 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ II RAD+ALY AK+ GRNR V Sbjct: 326 GDTVTGIIARADEALYRAKQQGRNRWV 352 >gi|241767604|ref|ZP_04765259.1| diguanylate cyclase [Acidovorax delafieldii 2AN] gi|241361502|gb|EER57938.1| diguanylate cyclase [Acidovorax delafieldii 2AN] Length = 389 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 130/264 (49%), Gaps = 27/264 (10%) Query: 4 SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFF--SIFIATVIFIANIFLFYIGLTPFYGL 61 L+ ++W E+ + +++ + + + A++ + +GL L Sbjct: 128 GLQALWALWAVVERRRATVGRGAWLLMAGLALEAGVLLVRASLAASLPVPQVGLLQGGTL 187 Query: 62 EYI-LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 + + + +V++S LG+++ + ++ NR+ ++ +D L+G N A IS Sbjct: 188 QTLTFMATFGVVLLSS-----LGFVT--MARDRADEANRV--MAAVDALTGAANRRALIS 238 Query: 121 SLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 +L E +S++ DID+FK++ND +GH GD+V+ + L + VG Sbjct: 239 ALDRDVARAVRTREPISVLMVDIDHFKRVNDQYGHQAGDQVLCRVVQVLQERVRSQDLVG 298 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKE 231 R GGEEF G+ A +LA+DLRK +E S +I +T+S G+ + + Sbjct: 299 RYGGEEFLVVLPGTDVAGALLLASDLRKAVE------SPAGAIGVTVSIGVFGGQLEPGD 352 Query: 232 PISTIIYRADQALYVAKKSGRNRV 255 ++ AD+ALY+AK++GRNRV Sbjct: 353 SWDVLVAAADRALYLAKENGRNRV 376 >gi|328472216|gb|EGF43086.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus 10329] Length = 349 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QLS D L+GLLN AFIS+L + ++ LS + DID+FK IND GH Sbjct: 161 QRLKQLSETDALTGLLNRRAFISNLDNAIIQHTKRSKTLSCLMIDIDHFKDINDRVGHFS 220 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI ++ V F+GRLGGEEFA ++ +A +A +R+ I+ + ++ Sbjct: 221 GDHVITRIAHVCQGVIRGSDFIGRLGGEEFAVILTDTNAIQAYEVAERIRQAIQATICHV 280 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I T+S G+AE + ++ AD+A+Y +K SGRN+V Sbjct: 281 DD-VEITTTVSIGVAELNSQQSNAKELLIEADKAMYYSKHSGRNQVT 326 >gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300076703|gb|ADJ66102.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 16/200 (8%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128 +SL I + + LL ++ L+ + ++ L+R D L+ LLN A +L + E+ Sbjct: 313 VSLAIFGLLTAWLLLHVRQE-LRRRVTAERQLEALARTDGLTDLLNRRALDEALQATWER 371 Query: 129 --------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV---GRLGG 177 S++F D+DYFK ND +GH +GD V+ ++ L P GR GG Sbjct: 372 CQRNLGASFSVLFIDVDYFKAYNDTYGHKLGDTVLKEVAATLTARL--PRHTDCAGRYGG 429 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPIST 235 EEF + Q A ++A L + I +S P +TIS G+A ER H + Sbjct: 430 EEFVVLLEQTDLQGAQMMAQRLCDAVRERHIAHTSSPLAVVTISVGVATLERDHHRRVED 489 Query: 236 IIYRADQALYVAKKSGRNRV 255 ++ AD ALY AK++GR+RV Sbjct: 490 VLNAADAALYRAKQAGRDRV 509 >gi|157364110|ref|YP_001470877.1| diguanylate cyclase [Thermotoga lettingae TMO] gi|157314714|gb|ABV33813.1| diguanylate cyclase [Thermotoga lettingae TMO] Length = 170 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 84/166 (50%), Gaps = 14/166 (8%) Query: 101 SQLSRI---DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +L RI D L+GL N + Y S++ DID+FK++ND +GH + Sbjct: 6 EELERISITDKLNGLFNRYKMDEEMRKAFYLWKRYQRPFSLIMIDIDWFKKVNDTYGHQI 65 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDKV+ L L V R GGEEF +L E+ A LA +R IE N Sbjct: 66 GDKVLQELGALLKKSLRASDIVSRWGGEEFLVLSLEIDEKGAITLAEKIRSEIE----NY 121 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S +I IT+S G+ + E I ++ D+ +Y+AK+SGRNRVV Sbjct: 122 SFAENIKITVSIGVCSAKNHETIDELLVSVDEKMYIAKQSGRNRVV 167 >gi|121609900|ref|YP_997707.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2] gi|121554540|gb|ABM58689.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2] Length = 612 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 90/173 (52%), Gaps = 9/173 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + + +RID L+G+ N F + + LS++ DID FKQ+ND Sbjct: 434 ELARARDEAEHFARIDMLTGVANRRYFEEVATMEFARTQRGQQALSVILIDIDLFKQVND 493 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD VI ++ FV R+GGEEF+ G + A A LR+ I Sbjct: 494 RYGHAAGDAVIRAVARLAKESVRESDFVARIGGEEFSVLLPGIGQAPAFATAERLRERIA 553 Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 + G S+ T S G++E+ +P S+++ RADQALY AK++GRN+VV Sbjct: 554 ACVVE-HDGHSLGFTASFGVSEQVADDPGFSSLLRRADQALYAAKQAGRNQVV 605 >gi|86147884|ref|ZP_01066189.1| putative sensory box/GGDEF family protein [Vibrio sp. MED222] gi|218710865|ref|YP_002418486.1| putative sensory box/GGDEF family protein [Vibrio splendidus LGP32] gi|85834311|gb|EAQ52464.1| putative sensory box/GGDEF family protein [Vibrio sp. MED222] gi|218323884|emb|CAV20245.1| putative sensory box/GGDEF family protein [Vibrio splendidus LGP32] Length = 316 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 94/163 (57%), Gaps = 7/163 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +L+ ID L+G+LN AF+ L + L+ + DID+FK+IND GH GD+VI Sbjct: 134 ELAEIDELTGILNRRAFLLGLEKEFSQPPKQSLTCLMIDIDHFKEINDQVGHLSGDEVIV 193 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ ++GRLGGEEF +S EA +A +RK IE++ + G I Sbjct: 194 QVASLCQQSIDCDDYLGRLGGEEFGVILTHTSAIEAYYVAETIRKTIESTPCTV-DGHII 252 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + T+S G+AE H + I ++ +AD+A+Y +K++GRN+V + Sbjct: 253 YPTVSIGVAEYTPHLKTIKELLAQADRAMYSSKQTGRNQVTLY 295 >gi|217971485|ref|YP_002356236.1| diguanylate cyclase [Shewanella baltica OS223] gi|217496620|gb|ACK44813.1| diguanylate cyclase [Shewanella baltica OS223] Length = 486 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 13/191 (6%) Query: 74 ISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128 +S+ ++L + +IS L Y R + ++ D L+G N F +K Sbjct: 297 LSLMVTLGILFISNMTLGR----YQRKLEVMASTDKLTGAANRQVFDEYFRQALDKAKLA 352 Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 +SI+ DID+FK++ND++GH +GD V+ +++ L + R GGEEF Sbjct: 353 QSPISILLLDIDHFKKVNDSYGHGIGDLVLKTMTNMLRGALQQEDILCRWGGEEFLILLP 412 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 G AA LA +R++I +I ++ G I IT S G+AE +EP +I RAD ALY Sbjct: 413 GMDLTRAAELAEQIRELIFQREIKVN-GLHISITASIGVAEHQAQEPAEDLIKRADLALY 471 Query: 246 VAKKSGRNRVV 256 AK++GRN+VV Sbjct: 472 QAKEAGRNQVV 482 >gi|168820670|ref|ZP_02832670.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342731|gb|EDZ29495.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 353 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 30/267 (11%) Query: 19 LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67 + S+ + F++++ + F+ ++ ++ + + Y L P + L +L Sbjct: 87 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVQLN 145 Query: 68 ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114 N+ +++ +T++ +L Y I E ++ Y R+ ++ D L+G N Sbjct: 146 QYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 205 Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170 + S LG E +++ D+DYFK ND++GH GD +A ++ + TP Sbjct: 206 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPAD 265 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229 V R GGEEF SS EAA++A ++ + E + + +S S +T+S GI Sbjct: 266 LVARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTA 325 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ II RAD+ALY AK+ GRNR V Sbjct: 326 GDTVTGIIARADEALYRAKQQGRNRWV 352 >gi|268610612|ref|ZP_06144339.1| diguanylate cyclase with PAS/PAC sensor [Ruminococcus flavefaciens FD-1] Length = 434 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/182 (36%), Positives = 88/182 (48%), Gaps = 28/182 (15%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145 L + + L+ D L+ + NH + + + EK ++I+ DIDYFKQ+ND Sbjct: 264 LMSTLKKYEDLALKDSLTEVYNHGRMETEISNALEKHKKCRKNIAIMILDIDYFKQVNDK 323 Query: 146 FGHPVGDKVIA--------FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FGH VGD + F D V GR GGEEF A SS+ EA +AN Sbjct: 324 FGHAVGDTTLKEFAHIIKEFCKDHNAV-------TGRWGGEEFVAVFYDSSQSEAEDMAN 376 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN--RV 255 +LRK +E+ HIT S GI + I+T R D ALY AK SGRN RV Sbjct: 377 ELRKKVEDFLFTAVE----HITCSIGITMLKPDDTINTAFERMDSALYWAKSSGRNYVRV 432 Query: 256 VC 257 +C Sbjct: 433 IC 434 >gi|126172532|ref|YP_001048681.1| diguanylate cyclase [Shewanella baltica OS155] gi|304411775|ref|ZP_07393387.1| diguanylate cyclase [Shewanella baltica OS183] gi|307306173|ref|ZP_07585918.1| diguanylate cyclase [Shewanella baltica BA175] gi|125995737|gb|ABN59812.1| diguanylate cyclase [Shewanella baltica OS155] gi|304349963|gb|EFM14369.1| diguanylate cyclase [Shewanella baltica OS183] gi|306911046|gb|EFN41473.1| diguanylate cyclase [Shewanella baltica BA175] Length = 486 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 13/191 (6%) Query: 74 ISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128 +S+ ++L + +IS L Y R + ++ D L+G N F +K Sbjct: 297 LSLMVTLGILFISNMTLGR----YQRKLEVMASTDKLTGAANRQVFDEYFRQALDKAKLA 352 Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 +SI+ DID+FK++ND++GH +GD V+ +++ L + R GGEEF Sbjct: 353 QSPISILLLDIDHFKKVNDSYGHGIGDLVLKTMTNMLRGALQQQDILCRWGGEEFLILLP 412 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 G AA LA +R++I +I ++ G I IT S G+AE +EP +I RAD ALY Sbjct: 413 GMDLTRAAELAEQIRELIFQREIKVN-GLHISITASIGVAEHQAQEPAEDLIKRADLALY 471 Query: 246 VAKKSGRNRVV 256 AK++GRN+VV Sbjct: 472 QAKEAGRNQVV 482 >gi|94498893|ref|ZP_01305431.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65] gi|94428525|gb|EAT13497.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65] Length = 564 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 95/185 (51%), Gaps = 14/185 (7%) Query: 81 LLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130 L G + G + K EL + LS D L+G+ N IS Y S Sbjct: 381 LSGELEGKVAKRTAELEQKNEELRLLSSTDRLTGVYNRMKLEEQIQHEISRAQRYKLDYS 440 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 IV D+DYFK +ND+FGH VGD+V+ + +L VGR GGEEF + ++ Sbjct: 441 IVMLDVDYFKNVNDSFGHQVGDRVLKMFAVELQNNVRESDVVGRWGGEEFIISCSCTNAD 500 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 A LA LR+IIE ++ G I T S G+++ ++ + ++I RAD ALY +K+ Sbjct: 501 NAFSLAEKLREIIE----HLDFGSGIACTASFGVSQYQLEDSLESLISRADNALYESKRM 556 Query: 251 GRNRV 255 GRN+V Sbjct: 557 GRNKV 561 >gi|148255939|ref|YP_001240524.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] gi|146408112|gb|ABQ36618.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] Length = 409 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 99/196 (50%), Gaps = 14/196 (7%) Query: 77 TISLLLGYISGSILKELFISYNRI----SQLSRIDCLSGLLNHSAF-------ISSLGSY 125 +I L+L Y G++ + RI + + D L+GLLN F I+ Sbjct: 187 SIELVL-YAVGTVFVIFMLVSERIVSAHKRAATTDPLTGLLNRRGFADACAQLIAREARE 245 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 +S++ FDID+FK IND FGH GD V+ +D +V GR+GGEEF AA L Sbjct: 246 QRPVSVLIFDIDHFKSINDRFGHAEGDTVLKLFADVVVNNLRLTDLSGRIGGEEF-AALL 304 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 S +EA + A +R+ S + P + T+S G+A + ++ AD ALY Sbjct: 305 PCSIEEAMVAAERVREAFAASGVVCEEKP-VDTTVSIGVAGGPAGTELDVLLAAADTALY 363 Query: 246 VAKKSGRNRVVCFSDI 261 AK+SGRNRV S++ Sbjct: 364 KAKRSGRNRVEAASEL 379 >gi|109900134|ref|YP_663389.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109702415|gb|ABG42335.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 316 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 104/203 (51%), Gaps = 24/203 (11%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-S 124 VE + +V+ +T +S + EL + + +LSRID L+G+ N + Sbjct: 124 VEQVCIVVYDVTDQA----VSKQAVDEL---NSELQRLSRIDGLTGIFNRRYWEEQFSRE 176 Query: 125 YNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 + L S++ DID FK+INDN+GHP GD+VI L+ + V GR GGE Sbjct: 177 FKRNLRKPSQSSVIMLDIDNFKKINDNYGHPAGDEVIRQLAKLIEDVTRETDICGRYGGE 236 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPI 233 EF ++ Q +LA +R+ +EN +I +I T+S GIA+ H + + Sbjct: 237 EFTILLPDTASQNVMVLAQRIRETVENLKIEYEQQ-TISFTVSLGIAQFSPVFEQHIQWL 295 Query: 234 STIIYRADQALYVAKKSGRNRVV 256 + AD+ALY AK SGRNRVV Sbjct: 296 ES----ADKALYQAKISGRNRVV 314 >gi|227891015|ref|ZP_04008820.1| diguanylate cyclase [Lactobacillus salivarius ATCC 11741] gi|227867424|gb|EEJ74845.1| diguanylate cyclase [Lactobacillus salivarius ATCC 11741] Length = 310 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 12/205 (5%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDC----LSGLLNHSAFISSLGSYNEK 128 II +T+ LL + ++ +++R D L+ LLN+ +F S + ++K Sbjct: 97 IIDVTLGTLLMFAVANVYVNFLTKQYEELRMARYDVSHDGLTNLLNYDSFHSHMNELSQK 156 Query: 129 LS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV----FGTPMFVGRLGGEEF 180 S I DID FK+ ND +GH G+ V+ + + +L FG V R GGEEF Sbjct: 157 SSRHQIICILDIDDFKKFNDTYGHLEGNDVLVYFTKRLFAEVKAHFGELASVYRFGGEEF 216 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 + G + ++ + + L + + ++G I +T S GIA C K+ I T++ A Sbjct: 217 CVSVHGVTVEDCLEMTDKLAEELRTKDYVTATGDKITVTFSGGIALGCDKKDIKTVLREA 276 Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265 D+ALY +K+ + V C D+E + Sbjct: 277 DKALYYSKRHKKGSVTCAKDLEKKS 301 >gi|160873406|ref|YP_001552722.1| diguanylate cyclase [Shewanella baltica OS195] gi|160858928|gb|ABX47462.1| diguanylate cyclase [Shewanella baltica OS195] gi|315265635|gb|ADT92488.1| diguanylate cyclase [Shewanella baltica OS678] Length = 486 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 13/191 (6%) Query: 74 ISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128 +S+ ++L + +IS L Y R + ++ D L+G N F +K Sbjct: 297 LSLMVTLGILFISNMTLGR----YQRKLEVMASTDKLTGAANRQVFDEYFRQALDKAKLA 352 Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 +SI+ DID+FK++ND++GH +GD V+ +++ L + R GGEEF Sbjct: 353 QSPISILLLDIDHFKKVNDSYGHGIGDLVLKTMTNMLRGALQQEDILCRWGGEEFLILLP 412 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 G AA LA +R++I +I ++ G I IT S G+AE +EP +I RAD ALY Sbjct: 413 GMDLTRAAELAEQIRELIFQREIKVN-GLHISITASIGVAEHQAQEPAEDLIKRADLALY 471 Query: 246 VAKKSGRNRVV 256 AK++GRN+VV Sbjct: 472 QAKEAGRNQVV 482 >gi|224367590|ref|YP_002601753.1| putative diguanylate cyclase (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223690306|gb|ACN13589.1| putative diguanylate cyclase (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 354 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 107/209 (51%), Gaps = 17/209 (8%) Query: 64 ILVENLSLVIISITISLLLGY---ISGSILKELFISYNRISQLSRI------DCLSGLLN 114 ++ EN I + LL Y I ILK I+ +R ++R+ D L+G N Sbjct: 130 LIEENCRAKIYMLPNQTLLNYHDEIVNIILKSTGIAISRQMNIARLTDAASLDPLTGCYN 189 Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 F +S + + LSI FDID+FK++ND GHP GD+V+ +S + Sbjct: 190 RREFQNQIQRSVSDATRHKKPLSIFMFDIDHFKRVNDTHGHPAGDEVLKEISRLVADNIR 249 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 + R GGEEF A +++ +A LA+ LR I++ +I SG +I +T S GIAE Sbjct: 250 RGDTLARYGGEEFIAILPETAKHKAIELADRLRLKIQSKEIKTDSG-NIKVTASFGIAEL 308 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVV 256 S ++ AD+ LY +K SGRNRV+ Sbjct: 309 HPHADSSRLVKDADEMLYKSKLSGRNRVM 337 >gi|297569923|ref|YP_003691267.1| response regulator receiver modulated diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] gi|296925838|gb|ADH86648.1| response regulator receiver modulated diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] Length = 467 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 15/213 (7%) Query: 51 FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110 +++ TPF G +V I IS + + K L S R +LS ID L+ Sbjct: 261 YHVLATPFRGPAG------DMVGIVKHISDVTSRVRAE--KALQESEQRYKELSIIDELT 312 Query: 111 GLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 GL N F +L Y LS++ D+D FK ND +GHP GD+V+A + + L Sbjct: 313 GLYNKRYFNKNLIPEVERARRYGNVLSLLMMDVDNFKHFNDTYGHPQGDRVLAAMGELLR 372 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 R+GGEEFA ++ + A LA LR+ + + + G ++ T+S G Sbjct: 373 NTVRLNDLACRIGGEEFAVILPETTGENALGLAERLRRKFAELEFHPTEGVAVQKTMSIG 432 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +AE E +++ RAD LY AK++GRNR + Sbjct: 433 VAEFETDETPESLLARADSNLYAAKEAGRNRCI 465 >gi|33602090|ref|NP_889650.1| hypothetical protein BB3114 [Bordetella bronchiseptica RB50] gi|33576528|emb|CAE33606.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 475 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 10/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVG 151 +++L+ ID L+ N + I+ L + ++ L++V D+D+FKQ+ND GH VG Sbjct: 307 LTRLATIDSLTDCWNRAEILKILRQEITRLRQHPDQPLAVVMLDLDHFKQLNDLHGHLVG 366 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + + SDQL FVGR+GGEEF A G A +A+ LR + N + Sbjct: 367 DAALRYFSDQLRSNLRGTDFVGRIGGEEFLALLPGCDGDAALAMADRLRAALRNDPFT-T 425 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G + +++S GIA +S ++ RAD ALY AK+ GR+R V + Sbjct: 426 EGQAAPLSVSVGIAFATPEDTAVSDVMRRADTALYEAKRRGRDRAVVY 473 >gi|39935836|ref|NP_948112.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009] gi|192291484|ref|YP_001992089.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] gi|39649690|emb|CAE28211.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris CGA009] gi|192285233|gb|ACF01614.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 411 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 11/176 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141 ++ E +S ++ + + +D L+G+LN F + E+ +S + FDID+FK Sbjct: 205 LVSERSVSLHKTA--ASLDPLTGMLNRRGFSEACARMIEREAMAGRPVSALIFDIDHFKS 262 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGHP GD+V+ + + GR+GGEEF AA L EA A+ +R+ Sbjct: 263 INDRFGHPAGDEVLKLFAAIVTNSLRISDLSGRIGGEEF-AALLPCPIDEAVTAADRVRE 321 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +N I + P + T+S G+A + ++ AD ALY AK+ GRNRVV Sbjct: 322 AFQNCGIEVDDAP-VATTVSIGVAGGPAAVELEVLLAAADTALYQAKRGGRNRVVA 376 >gi|158424036|ref|YP_001525328.1| response regulator [Azorhizobium caulinodans ORS 571] gi|158330925|dbj|BAF88410.1| response regulator [Azorhizobium caulinodans ORS 571] Length = 367 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 6/176 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 + L + + +L+ D L+GLLN AF L + S++ DID+FKQ+ND +G Sbjct: 174 ERLNQARRELVRLATRDGLTGLLNRRAFFIQAEDLLRHGIVASVILLDIDHFKQVNDTYG 233 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V+ ++ + G R+GGEEFA G +E +A A LR I ++ Sbjct: 234 HDGGDVVLTAVARAMSAYAGR---AARVGGEEFAILLPGVTESDAYEEAERLRWRIADTA 290 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + + G +I +T S G+AE + + RAD ALY AK GRNR V ++ + Sbjct: 291 VTLRDGRTISVTASLGVAEHATDDNADEWMKRADIALYAAKTGGRNRTVMGEEVSD 346 >gi|255918034|pdb|3IGN|A Chain A, Crystal Structure Of The Ggdef Domain From Marinobacter Aquaeolei Diguanylate Cyclase Complexed With C-Di-Gmp - Northeast Structural Genomics Consortium Target Mqr89a Length = 177 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 91/166 (54%), Gaps = 9/166 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++++LS D L+GLLN + + + + Y + S+V FDID+FK +ND +GH G Sbjct: 3 QLAKLSXTDRLTGLLNRGTWENLVDAEYERFRRYGQATSLVXFDIDHFKPVNDTYGHLAG 62 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI +D GR GGEEF + + A ++ +R+ IE S ++ S Sbjct: 63 DEVIRHTADVTRNNIRQSDSAGRYGGEEFGIILPETDAESARVICERIREAIEKSTVSTS 122 Query: 212 SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256 +G I T+S GIA+ E +AD+ALY AK+SGRN+VV Sbjct: 123 AG-DIQYTVSXGIAQLTETPENYXQWXQKADEALYKAKESGRNKVV 167 >gi|299537176|ref|ZP_07050479.1| response regulator receiver modulated diguanylate cyclase [Lysinibacillus fusiformis ZC1] gi|298727417|gb|EFI67989.1| response regulator receiver modulated diguanylate cyclase [Lysinibacillus fusiformis ZC1] Length = 543 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 99/196 (50%), Gaps = 18/196 (9%) Query: 76 ITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHS-------AFISSLGSYNE 127 I LL+ Y+S + +Y R + Q ID L+ + N FI E Sbjct: 216 IDEELLVAYVSNRL------AYKRELEQAIVIDELTQIYNRKFMESQMKLFIKHHQQNKE 269 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 SI D+DYFK++ND +GH VGD+V+ + + + G R GGEEF + Sbjct: 270 HFSIAMIDLDYFKKVNDTYGHLVGDEVLKGFASLVKELKGAEEIACRFGGEEFVILMPRT 329 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALY 245 +++EA I LR +E +I ++G S H+T S+GIAE P ++ ADQALY Sbjct: 330 TKKEAFIFIEKLRTSME-KKIFTANGTSFHVTFSSGIAEATSTNLHP-KKMLEEADQALY 387 Query: 246 VAKKSGRNRVVCFSDI 261 AK+ GRN+ + F +I Sbjct: 388 TAKQLGRNQTIIFDNI 403 >gi|134291815|ref|YP_001115584.1| diguanylate cyclase [Burkholderia vietnamiensis G4] gi|134135004|gb|ABO59329.1| diguanylate cyclase [Burkholderia vietnamiensis G4] Length = 506 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151 ++ L+R D L+GL N A ++L ++L S++F D D+FKQ ND +GH G Sbjct: 328 LTDLTRTDPLTGLHNRRALDAALADEWQRLQRGNDGSLSMLFIDADHFKQYNDRYGHAQG 387 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 D + FL++ + R GGEEF A + E AA +A +R +E + ++ Sbjct: 388 DTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDESGAATVAEAIRGAVERNCLDG 447 Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 ++ P+ ++I A R H + + + + AD ALY AK+ GRNR VC +D ++ Sbjct: 448 FDATMPAFTVSIGCATAHRGHPKSVQALSHHADLALYTAKRQGRNR-VCRADAKS 501 >gi|33596250|ref|NP_883893.1| hypothetical protein BPP1614 [Bordetella parapertussis 12822] gi|33573253|emb|CAE36915.1| putative membrane protein [Bordetella parapertussis] Length = 475 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 10/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVG 151 +++L+ ID L+ N + I+ L + ++ L++V D+D+FKQ+ND GH VG Sbjct: 307 LTRLATIDSLTDCWNRAEILKILRQEITRLRQHPDQPLAVVMLDLDHFKQLNDLHGHLVG 366 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + + SDQL FVGR+GGEEF A G A +A+ LR + N + Sbjct: 367 DAALRYFSDQLRSNLRGTDFVGRIGGEEFLALLPGCDGDAALAMADRLRAALRNDPFT-T 425 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G + +++S GIA +S ++ RAD ALY AK+ GR+R V + Sbjct: 426 EGQAAPLSVSVGIAFATPEDTAVSDVMRRADTALYEAKRRGRDRAVVY 473 >gi|169831989|ref|YP_001717971.1| response regulator receiver modulated diguanylate cyclase [Candidatus Desulforudis audaxviator MP104C] gi|169638833|gb|ACA60339.1| response regulator receiver modulated diguanylate cyclase [Candidatus Desulforudis audaxviator MP104C] Length = 314 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 9/178 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 ++L + +I+ L+ D L+GL N + L + + ++F D+D+FK+IN Sbjct: 125 EKLKEANKKIAALASTDALTGLPNRRVLLEHLEALVARGIREGRPVGVIFMDLDHFKRIN 184 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D + H GD V+ ++ +L V F+GR GGEEF G A +A R+ I Sbjct: 185 DEYSHLAGDTVLQDVAKKLRAVKRVYDFLGRYGGEEFLILVEGVDIVTAGAIAERFRQSI 244 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259 +++ + + SG S+ +T S G+ P + +I ADQALY AK GR+RV CF Sbjct: 245 KSTPVKLDSGVSLRVTASFGVTALNPAAPQSVDRLIAEADQALYSAKAQGRDRVCCFG 302 >gi|146341144|ref|YP_001206192.1| putative diguanylate cyclase [Bradyrhizobium sp. ORS278] gi|146193950|emb|CAL77967.1| putative diguanylate cyclase (GGDEF) [Bradyrhizobium sp. ORS278] Length = 408 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 11/180 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141 ++ E +S ++ + + D L+GLLN F + E+ +S++ FDID+FK Sbjct: 204 LVSERIVSAHK--RAATTDPLTGLLNRRGFADACAQLIEREARAQQPVSVLIFDIDHFKS 261 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH GD+V+ +D +V GR+GGEEF AA L S +EA + A +R+ Sbjct: 262 INDRFGHAEGDEVLKIFADVVVNNLRLTDLSGRIGGEEF-AALLPCSIEEAMVAAERVRE 320 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 S + P + T+S G+A + ++ AD ALY AK+SGRNRV +++ Sbjct: 321 AFAASGVVCEEKP-VDTTVSIGVAGGPAGTELDVLLAAADTALYKAKRSGRNRVEASAEL 379 >gi|291279263|ref|YP_003496098.1| hypothetical protein DEFDS_0866 [Deferribacter desulfuricans SSM1] gi|290753965|dbj|BAI80342.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 538 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 87/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 KEL ++ +LS DCL+ L N L + YN+ SI+ FDID FK IN Sbjct: 369 KELEKINQKLQKLSITDCLTKLYNRGKIEKDLTNEYNKAIRYNDTFSIILFDIDNFKIIN 428 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GDK++ +++ R GGEEF ++ A LA LRK I Sbjct: 429 DTYGHQMGDKILIEIANLTKETIRNTDIAARWGGEEFLILCPKTNINSAFNLAERLRKKI 488 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E+ +I ITIS GIAE I ++ +AD LY AKK G+NRV+ Sbjct: 489 ESHDFSIDK----RITISGGIAEFKKGLTIDEMLKQADDNLYKAKKEGKNRVI 537 >gi|302342602|ref|YP_003807131.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075] gi|301639215|gb|ADK84537.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075] Length = 394 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 108/201 (53%), Gaps = 15/201 (7%) Query: 68 NLSLVIISITISLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 N ++I+++ + L +I S + +E+ + ++ L+ D L+GL+N F+ + Sbjct: 193 NAIVLIVAVLVELSWAWIFLVMNSQRLEQEITSAQEKLILLAASDPLTGLVNRRRFLE-M 251 Query: 123 GS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 G Y L+++ D+D+FK++ND+FGH GD V+ + + V P +GR Sbjct: 252 GQAELERSLRYGRPLAVLVMDVDHFKRVNDSFGHATGDLVLRQTAQACLAVLREPDVLGR 311 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 LGG+EFAA ++ + A LA LR+ + +++ G ++ ++S G+A + Sbjct: 312 LGGDEFAALLPETTLEGALALAERLRQAVGGLRLDY-RGQAVRTSLSIGVAAMKPDDTPH 370 Query: 235 TIIYRADQALYVAKKSGRNRV 255 +I RAD ALY AK GR++V Sbjct: 371 GLIERADAALYKAKHQGRDQV 391 >gi|224373505|ref|YP_002607877.1| diguanylate cyclase [Nautilia profundicola AmH] gi|223589658|gb|ACM93394.1| diguanylate cyclase [Nautilia profundicola AmH] Length = 512 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 100/211 (47%), Gaps = 22/211 (10%) Query: 70 SLVIISITISLLLGYISGSILKE----------LFISYNRISQLSR---IDCLSGLLNHS 116 L+ I+ +I L + S + KE + ++ QLS+ D L+ + N Sbjct: 301 KLLTIATSIDKELNHFSEEMRKEDEEIEKLRQKVHFLEGKLKQLSKEVKTDFLTDIANKK 360 Query: 117 AFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 A I L Y S+VFFDID+FK IND +GH GD ++ L Sbjct: 361 AVIDELKKQESIYNRYGTNYSVVFFDIDHFKNINDTYGHDAGDVILKSLGLLFKRYARDI 420 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 +GR GGEEF A + ++ A A LR+IIE ++ + I +T+S G+A R Sbjct: 421 DMIGRFGGEEFVAILPNTDKEGAYKFAEKLRQIIEKTKF-MYKNTRIDVTVSGGVASRNE 479 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + AD+ LY+AKK+GRN+ VC D Sbjct: 480 TNSSDETLKLADKRLYLAKKTGRNK-VCADD 509 >gi|317128843|ref|YP_004095125.1| diguanylate cyclase [Bacillus cellulosilyticus DSM 2522] gi|315473791|gb|ADU30394.1| diguanylate cyclase [Bacillus cellulosilyticus DSM 2522] Length = 339 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 95/165 (57%), Gaps = 7/165 (4%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPV 150 FI I + + D L+G+ N S L S ++L+++FFDID+FK+IND GH + Sbjct: 175 FIESEVIEKYAFKDFLTGINNRRMMYSYLKSEIKNKKELTVIFFDIDHFKKINDQHGHFI 234 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ +++ ++ GR GGEEF + G+ + LA ++RK I++ Sbjct: 235 GDEILKEVTNVVLTRLTKNETFGRWGGEEFIIVSKGTGLENTITLAEEIRKTIKDH---- 290 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S + +T S G+ + + + +++ + AD+ALY+AK++GRN+V Sbjct: 291 SFTNKLQVTCSFGVKQFQYNDTLNSFLSEADKALYLAKENGRNKV 335 >gi|74318832|ref|YP_316572.1| PAS/PAC sensor-containing diguanylate cyclase [Thiobacillus denitrificans ATCC 25259] gi|74058327|gb|AAZ98767.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain [Thiobacillus denitrificans ATCC 25259] Length = 321 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 95/185 (51%), Gaps = 20/185 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL + + L+ D L+GL N AF G +EK S++ D+D+FKQIND Sbjct: 131 ELLRLHAELELLANHDGLTGLYNWRAFYEHAGQLLTTAHRRHEKASLLILDLDHFKQIND 190 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH GD+V+ + L V R GGEEF A G SE E+ + A LR + Sbjct: 191 RFGHAEGDRVLQAAAAALKASARQNDIVARHGGEEFVIAGFGLSEAESLVAAERLRAAVA 250 Query: 205 NSQINISSGPSIHITISAGIA------ERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256 + + N+ + +T S G+A H+ P ++ ++ RADQALY AK+SGRNR+ Sbjct: 251 SIE-NL----ACRVTTSVGVATFVPDPSSRHEPPTLLADLLDRADQALYHAKRSGRNRIC 305 Query: 257 CFSDI 261 F + Sbjct: 306 HFDQL 310 >gi|163761146|ref|ZP_02168223.1| two component response regulator [Hoeflea phototrophica DFL-43] gi|162281697|gb|EDQ31991.1| two component response regulator [Hoeflea phototrophica DFL-43] Length = 431 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 8/166 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPV 150 +R+ + D L+ L N F +S L ++ + ++ DID+FK++ND +GH Sbjct: 257 SRLRHHAERDQLTNLPNRRYFFEAVSKLMCEDQAKGLQSAVALLDIDFFKKVNDTYGHEA 316 Query: 151 GDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+ + ++ L G TP RLGGEEFA G Q A +R IE+++I Sbjct: 317 GDETLRAIARSLKTALGRTPHMAARLGGEEFAIYLRGLEGQGAHDFCEAIRSSIEDTRIE 376 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +G I +T S G+ + EP+ ++ ADQ LY+AK GRNRV Sbjct: 377 LRNGKIIAVTTSVGLVDIHANEPVDNQLHAADQLLYMAKAGGRNRV 422 >gi|90419194|ref|ZP_01227104.1| diguanylate cyclase family [Aurantimonas manganoxydans SI85-9A1] gi|90336131|gb|EAS49872.1| diguanylate cyclase family [Aurantimonas manganoxydans SI85-9A1] Length = 273 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 122/249 (48%), Gaps = 13/249 (5%) Query: 10 SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69 S+W E S+ + + IF+ + +F G ++ ++ +E Sbjct: 21 SVWRLAEAEERSWLDTALAVALCLVSGIFLVRLPLFPMLF---DGTASYHAVKTSGLETT 77 Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEK 128 L + + L++ + I+ + Y R S+ D ++GLLN F SL + Sbjct: 78 LLTLSGLVTPLVVFLLLARIISGVITDYRRRSER---DAMTGLLNRRGFDQSLTRTLKRG 134 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +++ DID+FKQ+ND++GH VGD +I D ++ + GR+GGEEFA S Sbjct: 135 GAVILCDIDHFKQVNDSYGHAVGDTIIRAFGD---LIGRSGYRAGRIGGEEFALILPDCS 191 Query: 189 EQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 ++AA +A LR +++ +++G I+ S GIA + + ++ AD+ALY A Sbjct: 192 ARQAARVAETLRLTFYHTEHEALAAGH--RISASFGIAGFAPADTMDAVLLAADRALYRA 249 Query: 248 KKSGRNRVV 256 K +GRNRVV Sbjct: 250 KDNGRNRVV 258 >gi|170697320|ref|ZP_02888413.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] gi|170137774|gb|EDT06009.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] Length = 506 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 12/174 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151 ++ L+R D L+GL N A ++L E+L S++F D D+FKQ ND +GH G Sbjct: 328 LTDLTRTDPLTGLHNRRALDAALADEWERLQRGSDGSLSVLFIDADHFKQYNDRYGHAQG 387 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 D + FL++ + R GGEEF A + E+ A +A +R +E ++++ Sbjct: 388 DTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDERGAQQVAEAIRLAVERNRLDG 447 Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ P+ ++I R + + ++AD ALY AK+ GRNR VC +D+E Sbjct: 448 FDATIPAFTVSIGCATGHRARPPSVHALTHQADLALYAAKRQGRNR-VCVADVE 500 >gi|89092154|ref|ZP_01165109.1| GGDEF family protein [Oceanospirillum sp. MED92] gi|89083889|gb|EAR63106.1| GGDEF family protein [Oceanospirillum sp. MED92] Length = 314 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ L+ D ++G N F S+ Y S+ F DIDYFK++ND FGH V Sbjct: 147 QRLKDLAEKDPMTGAYNRRFFRESIDQHYATFKRYGTTYSLAFIDIDYFKKVNDQFGHDV 206 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI L + T + R GGEEF + EA ++A LR IE + Sbjct: 207 GDGVICHLVTHIQEQLRTTDLLSRFGGEEFVVLFPHINLDEACLVAERLRATIEMTPYK- 265 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S + T+S GI+E R E + I+ RAD ALY +K SGRN+V Sbjct: 266 SINHKVPFTVSIGISEVRAEDESVEDILKRADSALYQSKSSGRNKVT 312 >gi|34495546|ref|NP_899761.1| two-component response regulator [Chromobacterium violaceum ATCC 12472] gi|34330253|gb|AAQ57770.2| probable two-component response regulator [Chromobacterium violaceum ATCC 12472] Length = 405 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNHS L S + LS+ D+DYFKQ+NDN+GH VGD+V+ L+ Sbjct: 246 DSLTGLLNHSHLHGQLDSAILRARRVGQPLSLAMLDLDYFKQVNDNYGHQVGDEVLLTLA 305 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L VGR GGEEFA G+ +A + LR+ + + + T Sbjct: 306 RFLKERLRRTDLVGRYGGEEFAIVLGGTPADKAHGMLETLRQDFGLLEQQVGER-TFRQT 364 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 SAGI+ + ++ +AD+ LY AK +GRNRVVC Sbjct: 365 FSAGISSLASAATSTELVQQADEMLYRAKAAGRNRVVC 402 >gi|304310664|ref|YP_003810262.1| hypothetical protein HDN1F_10220 [gamma proteobacterium HdN1] gi|301796397|emb|CBL44605.1| conserved hypothetical protein [gamma proteobacterium HdN1] Length = 327 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 8/170 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 + Y + + S D L+G N + + L YN+ LS++ D+DYFK+IND++G Sbjct: 138 LRYQEVVRSSLTDALTGAGNRFSLDNVLHRETDLASRYNQPLSVLMLDLDYFKRINDSYG 197 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V+ ++ L R GGEEF + + A ++A LR I N Sbjct: 198 HAAGDYVLKAVAKTLRATSRGVDMTFRYGGEEFVVLLNKTHLEGATVIAERLRNTIANLS 257 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + I G I +TIS G+A +E + RAD+ALY AK SGRNRV Sbjct: 258 V-IHDGKEIPVTISVGVAALQKQETTQQFMERADKALYRAKNSGRNRVAV 306 >gi|149374451|ref|ZP_01892225.1| diguanylate cyclase [Marinobacter algicola DG893] gi|149361154|gb|EDM49604.1| diguanylate cyclase [Marinobacter algicola DG893] Length = 357 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 129/253 (50%), Gaps = 28/253 (11%) Query: 25 HTFMIYF--SIFFSIFI-ATVIFIANIFLFYIGL-------TPFY-----GLEYILVENL 69 H +++ F ++F S+ + A VI + ++ +YI L P L + + NL Sbjct: 96 HYYLLMFIPALFVSMALRAAVICLVALWSYYIALYLMMWTIEPLQPIAPGALMAVYLFNL 155 Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN--HSAFISS--LGSY 125 S+V + Y+S L + + ++ +++ D L+GL N H +++ L + Sbjct: 156 SVVFA------MFSYLSFFYLTMVTTANRKLRRMATTDSLTGLFNRRHMTYLAEKELARF 209 Query: 126 NEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 V F D+D+FK IND GH +GD+V+ ++ + T + R GGEEF A Sbjct: 210 ERTGRPVAFLVLDVDHFKAINDRHGHEIGDRVLIEVAKIIEAQLRTQDLISRWGGEEFLA 269 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 A +S A A +RK + + ++G +I +TISAG++E + +++ I RAD+ Sbjct: 270 ALPDTSLDSAQASAERVRKALLDHDWLATTGEAIGLTISAGVSEYRRGDTLNSAISRADR 329 Query: 243 ALYVAKKSGRNRV 255 ALY +K+ GRNRV Sbjct: 330 ALYRSKEGGRNRV 342 >gi|95931099|ref|ZP_01313825.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95132844|gb|EAT14517.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 1174 Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 66/172 (38%), Positives = 89/172 (51%), Gaps = 12/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL +++LS D L+GLLN A I N +S++ D+DYFK+IN Sbjct: 851 RELEEKNQELNRLSMTDKLTGLLNRHAIEPIIDNEIGRHKRANNPVSLLIVDLDYFKKIN 910 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 DNFGH GDKV+ +S L+ V + + R GGEEF A + +A LA +R+ I Sbjct: 911 DNFGHAAGDKVLKEVSTALIAVTRSSDSLARWGGEEFLLVAGDTRILKATALAEKIRQTI 970 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 QI+ I +T S G+AE E R D+ALY AK SGRN V Sbjct: 971 AGLQID-----DIPVTASIGVAEFNTDETFHQWYERCDKALYQAKDSGRNCV 1017 >gi|291614023|ref|YP_003524180.1| periplasmic/7TM domain sensor diguanylate cyclase [Sideroxydans lithotrophicus ES-1] gi|291584135|gb|ADE11793.1| periplasmic/7TM domain sensor diguanylate cyclase [Sideroxydans lithotrophicus ES-1] Length = 570 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 114/238 (47%), Gaps = 18/238 (7%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90 F+ FF + V +A G PF + E LVI + ++L L + + Sbjct: 344 FATFFGMLGVGVTALA-----VWGKIPFRPYTFHAAE-FGLVIEATLLALGLS----NWM 393 Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIN 143 +E + Q++R+D L+ L N AF+ S+ G + +S+V DID+FK IN Sbjct: 394 RENRDALYEAEQVARLDALTHLNNRRAFMELALPYASTAGRHERPMSLVMMDIDHFKSIN 453 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD V+ ++D L T V R GGEEF + ++A A LR+ I Sbjct: 454 DQYGHQTGDLVLTAVADLLKNFSRTSDIVARWGGEEFILLLPETGLKQAINHAERLRQAI 513 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +I + SI +T S GIA +I +AD LY AK+SGRN+V C S + Sbjct: 514 AEFRIPVGE-TSISLTASFGIAAHVANLSFDKMIEQADVQLYEAKRSGRNKVCCSSAV 570 >gi|254457279|ref|ZP_05070707.1| signal transduction response regulator-chey like receiver and ggdef domain [Campylobacterales bacterium GD 1] gi|207086071|gb|EDZ63355.1| signal transduction response regulator-chey like receiver and ggdef domain [Campylobacterales bacterium GD 1] Length = 534 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 29/235 (12%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLV--IISITISLLL------GYIS--GS 88 I ++F+ N+ FY + +++N+S+V I+ + +SL + YI+ S Sbjct: 307 IGKILFVKNL--------NFYTDKLDMIKNISIVSGIVLLLLSLYMMRKIFNNYINIVNS 358 Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +L I + +L +D L+ + N + + YN +LS++ FDID FK Sbjct: 359 YQSKLEIKNRTLLKLVNVDHLTKIHNRKSIETILIKELKRAKRYNHELSLIIFDIDNFKN 418 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GH +GDKV+ ++ + + GR GGEEF + +S A ++A +R+ Sbjct: 419 INDTYGHNIGDKVLKSIAKVVANSIRESDYFGRWGGEEFIVISTETSMDNALLVAEKIRE 478 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I S + IT S G+AE ++ +I++ AD ALY AK SG+NRV+ Sbjct: 479 SI--STYDFEEAEK--ITCSIGVAEYTSEDTHQSIVHNADTALYKAKHSGKNRVI 529 >gi|296133437|ref|YP_003640684.1| diguanylate cyclase [Thermincola sp. JR] gi|296032015|gb|ADG82783.1| diguanylate cyclase [Thermincola potens JR] Length = 364 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 16/186 (8%) Query: 89 ILKELFISYNRIS-------QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134 ++KEL +Y ++S +++ D L+ L N+ F+ L YN+ LS++ Sbjct: 174 LIKELQAAYRQLSAYNAQVEEMAIKDPLTELYNYRYFVGRLREEIQWAQKYNKPLSLILL 233 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DIDYFKQ ND +GHP GD + + V R GGEEF +S EA + Sbjct: 234 DIDYFKQFNDTYGHPAGDAALKKAAKIFQENIRDRDIVARYGGEEFFVLLPDTSVDEAYL 293 Query: 195 LANDLRKIIENSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252 A +RK IE + I + + IT+SAG+A + ++ DQALY AKK GR Sbjct: 294 CAERIRKAIEKTDIKVEEKKATAKITVSAGVAALSTGTRTVKDLLQVVDQALYQAKKLGR 353 Query: 253 NRVVCF 258 N+ + Sbjct: 354 NKTQIY 359 >gi|302671323|ref|YP_003831283.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302395796|gb|ADL34701.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 435 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 12/177 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 +KE + + +L +D L+GL+NH + + + E +S++ D+D FK+I Sbjct: 263 VKERMETLKKYEELVMVDPLTGLINHGGIKTEIENAIDIYQNGGESISLMMIDLDNFKKI 322 Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 NDN+GH VGD + L+D L VGR GGEEF G S EA A DLR+ Sbjct: 323 NDNYGHSVGDATLRTLADVLKGFAKDKNASVGRWGGEEFVTILSGVSHDEAVEYAEDLRR 382 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + G + HIT S GI++ + I R D+A+Y +K +GRNRV Sbjct: 383 SVAEADF----GKAGHITCSVGISQLGDDDSFDDIFDRMDKAMYSSKIAGRNRVTVL 435 >gi|218888286|ref|YP_002437607.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759240|gb|ACL10139.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 569 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 15/207 (7%) Query: 69 LSLVIISITISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNH-------SAFI 119 LS VI ++ L I G+ L L RI++ D L+G N +A + Sbjct: 348 LSAVIYTLHNHSQLRIIEGNNQALTRLNEELRRIAER---DHLTGCFNRRRLDEAMNAEL 404 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 + L++ D+D+FK +ND GH VGD ++A +++ + P + R+GGEE Sbjct: 405 ARSARSGHPLALAMLDLDHFKAVNDQHGHGVGDAMLAHVTEIIRNQLREPDLLARVGGEE 464 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIY 238 FA + E+EA L +R+ ++ + + + GP I +T+SAG+AE R EP ++ Sbjct: 465 FALLLPDTGEREAVTLLERVRRKVQETPLPHADGP-IPMTVSAGVAESRPDIEP-GRWMH 522 Query: 239 RADQALYVAKKSGRNRVVCFSDIENNT 265 AD ALY+AK+ GRNR V + + T Sbjct: 523 VADAALYMAKRCGRNRTVRAAQVPEET 549 >gi|262373774|ref|ZP_06067052.1| GGDEF family protein [Acinetobacter junii SH205] gi|262311527|gb|EEY92613.1| GGDEF family protein [Acinetobacter junii SH205] Length = 396 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 133/282 (47%), Gaps = 31/282 (10%) Query: 9 LSIWLCHEKNL-ESFSPHTFMIYFSI-------FFSIFIATVIFIANIFLFYIGLTPFYG 60 +++ LCH L SFSP T + Y S+ F I + A I + + YG Sbjct: 115 VTVLLCHTGYLIGSFSPATMVTYASVVGVGLILFDRRMIYCALIPATIAMLFCNFLSMYG 174 Query: 61 -LEYILVENL--------------SLVIISITISLLLGYISGSILKELFISYNRISQLSR 105 L+Y + N S+ + I L Y+ +L++ I LSR Sbjct: 175 ILQYAPIFNPEILNQAEMHPFWVGSMFFFLLPILLACLYLFEILLQQWRTRETAIQALSR 234 Query: 106 IDCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +D L+ ++N + + L N+++ S++ D+D+FK IND+FGH +GD+V+ ++ Sbjct: 235 LDPLTNVMNRRSISNQLEKLNQQVDQLYSVILLDLDHFKNINDHFGHSLGDEVLVNVAKC 294 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L +GR GGEEF +S +A +A R I SQ++ S ++S Sbjct: 295 LTENLRDQDMIGRFGGEEFIILLPNNSTTQAKSIAERCRIAI--SQLSFISEDHQEFSVS 352 Query: 222 A--GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 A GI+ + II +ADQALY K +GRN+V FS++ Sbjct: 353 ASFGISSSQNASESHLIISQADQALYAVKANGRNQVKIFSEL 394 >gi|307720283|ref|YP_003891423.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306978376|gb|ADN08411.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 604 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 12/159 (7%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+G+ N F I+ Y S++ DID+FK+IND +GH VGDKV+ Sbjct: 450 IDPLTGIYNRRYFERKISEEITRCERYEMVFSLIMLDIDFFKRINDTYGHDVGDKVLQSH 509 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 S ++ + R+GGEEF +++++A A DLRK ++N Q + I Sbjct: 510 SALILENLRESDILCRVGGEEFMIILPQTTQEQAYYKAEDLRKKVQNEQ-----DMHLQI 564 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T+S G+A+ + T+ R D ALY AK+SGRN+V Sbjct: 565 TMSFGVAQFHKADTYETLYKRVDTALYKAKESGRNKVAV 603 >gi|209809645|ref|YP_002265184.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] gi|208011208|emb|CAQ81639.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] Length = 712 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/191 (37%), Positives = 99/191 (51%), Gaps = 17/191 (8%) Query: 79 SLLLGYIS---GSIL--KELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNE----- 127 +LLG I G++L ++L YN ++ QLS D L+ L N + L + Sbjct: 524 KVLLGVIVAIIGALLYRQKLLKKYNTKLIQLSTYDSLTSLYNRRVIDTHLVKQQKLSLRT 583 Query: 128 --KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 LS++ DIDYFK+IND FGH GD+VI +S L+ T VGR GGEEF Sbjct: 584 DMPLSVIMCDIDYFKKINDTFGHIAGDEVIVNMSALLLNNIRTSDIVGRWGGEEFIIICP 643 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 + A +LA LRK IE + + IT+S GIA+ ++ +AD ALY Sbjct: 644 NTHSSGAKVLAECLRKKIE----KMPATNEQTITMSFGIAQFNENLSYEELLIKADAALY 699 Query: 246 VAKKSGRNRVV 256 AK+ GRN+VV Sbjct: 700 AAKEQGRNKVV 710 >gi|323497745|ref|ZP_08102760.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] gi|323317221|gb|EGA70217.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] Length = 345 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 9/191 (4%) Query: 74 ISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128 ++ +++ L +++ IL+ + S + QL+ D L+G+ N A + + Y+++ Sbjct: 148 VNFSLTFLCIWLTSHILEVKRKTSEASLGQLASRDSLTGVYNRHALVHNFKRYHDESNKV 207 Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 LS++ D+DYFKQ+ND +GH VGDKV+ + L+ V R+GGEEF A Sbjct: 208 PLSLLILDLDYFKQVNDQYGHDVGDKVL-IETAALLDALSDEHLVYRIGGEEFCIALHDC 266 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 Q A A +R IE + + +I +T S G+ + H + + +++ AD+ LY A Sbjct: 267 DLQHARHKAELIRHTIERYEFS-GGEEAIKLTASIGVYQCHHFDSLESVLKEADKELYRA 325 Query: 248 KKSGRNRV-VC 257 KK+GRN+V VC Sbjct: 326 KKNGRNQVMVC 336 >gi|197295246|ref|YP_002153787.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] gi|195944725|emb|CAR57329.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] Length = 506 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 12/184 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQ 141 L++ F ++ L+R D L+GL N A ++L E+L S++F D D+FKQ Sbjct: 318 LRDNFRKQTLLTDLTRTDPLTGLHNRRALDTALADEWERLQRGSGGSLSVLFIDADHFKQ 377 Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND GH +GD + FL++ + R GGEEF A + E AA +A+ +R Sbjct: 378 YNDRHGHALGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDENGAARVADAIR 437 Query: 201 KIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + +E ++++ + P ++I + R + + + AD ALY AK+ GRNR VC Sbjct: 438 REVERNRLDGFAETVPPFTVSIGCATSRRARHASVHALTHDADMALYRAKREGRNR-VCR 496 Query: 259 SDIE 262 + E Sbjct: 497 AQAE 500 >gi|294140421|ref|YP_003556399.1| response regulator [Shewanella violacea DSS12] gi|293326890|dbj|BAJ01621.1| response regulator [Shewanella violacea DSS12] Length = 413 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 87/161 (54%), Gaps = 10/161 (6%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + +D L+G+ N F I + L++ DID+FK++ND GH VGD+V+ Sbjct: 253 ANLDYLTGVYNRRYFFGLFEEQIKQIKQKQGTLTVALLDIDFFKRVNDTHGHDVGDEVLV 312 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 S +L FG V R GGEEF A G +E++ L + R +E I S G + Sbjct: 313 EFSARLKHFFGQHFTVSRFGGEEFTVAFKGLNEEKVFALMDKFRSQLEMKPIATSKG-DM 371 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IT+S GIA + + +I RAD+ALY AK+SGRN +VC Sbjct: 372 FITVSTGIAG-LADDSLDELIQRADKALYDAKESGRN-LVC 410 >gi|224368288|ref|YP_002602451.1| two domain sensory box histidine kinase (PAS/PAC domain/GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223691004|gb|ACN14287.1| two domain sensory box histidine kinase (PAS/PAC domain/GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 440 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 8/165 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G N +F++ YN L++V DID+FK+INDNFGH GD Sbjct: 274 LEKLATTDPLTGAKNRRSFLNLFEKEMKRSKRYNYTLALVMIDIDHFKKINDNFGHETGD 333 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 K++ L + V R GGEEF + +A+ A LR + S++ + Sbjct: 334 KILNLLVAKCHSVLRDSDIFARWGGEEFIILLPETDLLQASSAAERLRGALAQSELRTND 393 Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 G +I+ T+S G +K I II +AD+ALY+AKK GRNR V Sbjct: 394 GTNINFTVSIGFTIFGNKNILIDEIIKKADKALYLAKKQGRNRAV 438 >gi|167552973|ref|ZP_02346723.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|204930080|ref|ZP_03221101.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321074|gb|EDZ06275.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205322476|gb|EDZ10315.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 353 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 13/199 (6%) Query: 71 LVIISITISLLLG-YISGSILKELFISYN-------RISQLSRIDCLSGLLNHSA---FI 119 LV +++T L+ G +I E ++ Y R+ ++ D L+G N + F+ Sbjct: 154 LVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMEIFL 213 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178 E +++ D+DYFK ND++GH GD +A ++ + TP V R GGE Sbjct: 214 GDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVAGVMKRSVRTPADLVARYGGE 273 Query: 179 EFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 EF SS EAA++A ++ + E + + +S S +T+S GI + ++ II Sbjct: 274 EFVVVLPSSSLNEAALVAERIQTNLRETAMPHAASAVSETVTVSMGITLSTAGDTVTGII 333 Query: 238 YRADQALYVAKKSGRNRVV 256 RAD+ALY AK+ GRNR V Sbjct: 334 ARADEALYRAKQQGRNRWV 352 >gi|90022477|ref|YP_528304.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952077|gb|ABD82092.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 346 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 96/184 (52%), Gaps = 14/184 (7%) Query: 83 GYISG--SIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKL 129 GYISG S L KEL I+ +IS ++ D L+G+ N L + N + Sbjct: 156 GYISGLRSKLRNRNKELNIALVKISDMANRDELTGIANRRKIFEVLDTEVKRKREPNTAI 215 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 I D+D+FK+IND +GH GD+V+ +++++ T GR GGEEF +S Sbjct: 216 GICILDVDHFKRINDTYGHQAGDEVLKRIAEEVPKSLRTMDCFGRYGGEEFLLILPSTSL 275 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 + I AN +R+ + + + P +TIS GIAE +E I I RAD+ALY AK Sbjct: 276 EGTEIKANRVREEVAKLEFK-NLPPGEKVTISIGIAEYFPEEEIDATIQRADKALYEAKA 334 Query: 250 SGRN 253 GRN Sbjct: 335 HGRN 338 >gi|304312890|ref|YP_003812488.1| hypothetical protein HDN1F_32720 [gamma proteobacterium HdN1] gi|301798623|emb|CBL46855.1| Hypothetical protein HDN1F_32720 [gamma proteobacterium HdN1] Length = 319 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 101/203 (49%), Gaps = 16/203 (7%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--- 122 VE + +++ +T + + + + +K+L +SRID L+ L N S + S L Sbjct: 122 VEKVCVILFDVTDTAIYRTMHQAAIKKL-------EMVSRIDGLTQLFNRSHWQSRLNEE 174 Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 Y LS++ FD+D+FK +ND +GH GD V+ +S + GR GGE Sbjct: 175 FSRSARYQTPLSLIMFDLDFFKNVNDTYGHLGGDAVLCAVSAVIKNSVRENDIAGRYGGE 234 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTII 237 EF + E A I+A +R IE + I I T S G+ E P +I Sbjct: 235 EFGILLPNTPESGAMIVAERIRASIEATTIPFEDY-EIRATASLGVTEYKATVPDCENLI 293 Query: 238 YRADQALYVAKKSGRNRVVCFSD 260 RAD ALY AK++GRNRV+ F++ Sbjct: 294 ARADAALYKAKEAGRNRVILFTE 316 >gi|288573949|ref|ZP_06392306.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569690|gb|EFC91247.1| diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 494 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 89/168 (52%), Gaps = 12/168 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 +R+ L+ D L+GL N L S E+ LS+V DID+FK +NDNFGH V Sbjct: 331 DRLEYLANRDSLTGLWNRRKMDQILLSETERSSRYGSSLSVVMVDIDHFKNVNDNFGHEV 390 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V++ ++ + VGR GGEEF + + A A +R +E++ + Sbjct: 391 GDTVLSSIAALMKNCTRAGDSVGRWGGEEFLVVLPETDVKGALEYAERMRSAVEDNVFH- 449 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VC 257 I IT S G+ + EP++ + RAD+ALY AK+ GRNRV +C Sbjct: 450 ---DDIRITSSFGVTQYRSGEPVNEFVARADEALYDAKEKGRNRVEIC 494 >gi|332531707|ref|ZP_08407592.1| diguanylate cyclase [Pseudoalteromonas haloplanktis ANT/505] gi|332038683|gb|EGI75125.1| diguanylate cyclase [Pseudoalteromonas haloplanktis ANT/505] Length = 367 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 96/185 (51%), Gaps = 22/185 (11%) Query: 91 KELFISYNRIS-------QLSRIDCLSGLLNHSAF---ISSLGSYNEKLS----IVFFDI 136 K F +Y R+S L+ D L+GL N F +S L + N+ ++ DI Sbjct: 173 KTRFSAYTRLSIRNLEIQHLAETDKLTGLYNRQKFDFELSQLIAKNDVFKTPHCLLICDI 232 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK IND +GH VGD V+ + L G + R GGEEF +S ++A A Sbjct: 233 DHFKNINDTYGHLVGDNVLTEFAKILKSRMGNDALIARWGGEEFTIILSNTSLNDSAKKA 292 Query: 197 NDLRK-IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +DLRK I EN+ N++ TIS G+A + + ++ RAD ALY AK +GRN+ Sbjct: 293 DDLRKYIAENTVTNVA------FTISIGLATIQKDDTVLKLLERADIALYKAKNNGRNK- 345 Query: 256 VCFSD 260 VC SD Sbjct: 346 VCVSD 350 >gi|268679295|ref|YP_003303726.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268617326|gb|ACZ11691.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 172 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 16/170 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q S D L+GL N F + Y L+++ D+D+FK+IND +GH VGD Sbjct: 2 LKQESITDGLTGLRNRRYFDQRISEEVALSRRYKLPLTLMLVDVDHFKKINDTYGHTVGD 61 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-- 210 +V+ LS ++ V V R GGEE +++++A ILA LR+ +E +++ Sbjct: 62 EVLKKLSQIILSVVRDSDIVARYGGEEIVIITPNTTKEDAGILAERLREKVEQTKVATIA 121 Query: 211 SSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVV 256 ++ + +TIS G+ C + T ++ +DQALY+AKK GRNRVV Sbjct: 122 TTQEVVQVTISIGV---CALSAVITDQEALLEESDQALYLAKKYGRNRVV 168 >gi|153005101|ref|YP_001379426.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] gi|152028674|gb|ABS26442.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] Length = 758 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 15/189 (7%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130 + ++ G + SIL+ Y +L+ D L+GL NH F + L + +K+S Sbjct: 562 LEVIAGQAAQSILRARL--YEEAERLATTDGLTGLTNHRTFQARLDEHLALAARSGQKVS 619 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D+FK +ND +GHPVGD+V+ ++ L V R GGEEFA + Sbjct: 620 LLLCDVDHFKSVNDTYGHPVGDEVLRGVARVLAGDARQTDVVARYGGEEFAIVMPATDGA 679 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVA 247 A ++A +R+ + GP + +T+S G+A E ++P ++ RAD LY A Sbjct: 680 SAVVIAERIRERLAAVTFQTEQGP-LRVTMSLGVATWPEDGARKP--ELVERADACLYHA 736 Query: 248 KKSGRNRVV 256 K+ GRN+ V Sbjct: 737 KRHGRNQTV 745 >gi|71906110|ref|YP_283697.1| GGDEF [Dechloromonas aromatica RCB] gi|71845731|gb|AAZ45227.1| GGDEF protein [Dechloromonas aromatica RCB] Length = 412 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+GL+N F+ S + Y +++ D+D+FK++ND +GH GD Sbjct: 247 LEKLANKDGLTGLMNRRFFMQSAEAELQRAQRYRRPVTVAMADLDFFKKLNDTYGHAAGD 306 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +D + V R GGEEFA S EA LA LR N++I + Sbjct: 307 AVLCAFADLVRDSSRQSDLVCRYGGEEFAFLFPEISPTEAEALAERLRASCANAEIGLPD 366 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G ++ +T+S G+A+ + PI + AD ALY AK+ GRNRVV Sbjct: 367 GRTVKVTVSMGLAD-ASECPIEIALKHADDALYEAKRLGRNRVV 409 >gi|323498784|ref|ZP_08103770.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326] gi|323316146|gb|EGA69171.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326] Length = 324 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 7/167 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 + +LS D L+G+LN AFI SL LS + DID+FK+IND GH GD+V Sbjct: 140 LKRLSETDELTGILNRRAFIHSLQEAFNSVERSNLSCLMVDIDHFKEINDQVGHLSGDEV 199 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I+ ++ VGRLGGEEF +S +A +A +R+ I ++ + Sbjct: 200 ISHVAQLCQQQIRASDAVGRLGGEEFGVMLSHTSAIQAYDIAERIRRSIADTPCQVDD-K 258 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +I+ T+S GIAE + T++ +AD+A+Y +K +GRN+V + D Sbjct: 259 TIYPTVSIGIAEADATTHDVKTLLVQADKAMYYSKHTGRNQVTLYHD 305 >gi|254784734|ref|YP_003072162.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901] gi|237685671|gb|ACR12935.1| GGDEF domain protein [Teredinibacter turnerae T7901] Length = 444 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 12/182 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFK 140 +I K L + + L++ D L+GLLN L ++ E+ S V DID+FK Sbjct: 266 AINKLLNLQNKQFEDLAKTDQLTGLLNRIGIRDVLYDGLNNWKERRTPFSFVLIDIDHFK 325 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND+FGH VGD+++ + L F+ R GGEEF + +A +LA LR Sbjct: 326 QVNDSFGHDVGDQILKLTAKLLAENIRRSDFLARWGGEEFILVCPDTDLYQAQVLAELLR 385 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 K +E++ ++ P IT S G++ + + RAD ALY AK GRN+V +D Sbjct: 386 KKLEDAPLH----PERQITASFGVSA-LSTPNLDDLFKRADAALYEAKTQGRNKVCAVAD 440 Query: 261 IE 262 + Sbjct: 441 TD 442 >gi|94499999|ref|ZP_01306534.1| probable two-component response regulator [Oceanobacter sp. RED65] gi|94427857|gb|EAT12832.1| probable two-component response regulator [Oceanobacter sp. RED65] Length = 364 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 96/170 (56%), Gaps = 15/170 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQINDNFGHPVG 151 ++ +L+ D L+G+ N F ++L S +E LSI+F D+D+FK+INDNFGH G Sbjct: 186 KLERLNETDTLTGIYNRQYFDNALDMQWDLASRSENSLSILFLDLDHFKKINDNFGHLAG 245 Query: 152 DKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 D+V+ + + T M + R GGEEFA + +Q+A LA +R IEN+ Sbjct: 246 DQVLCHAAHLFSEIARRKTDM-IARYGGEEFAIILPATEKQDALDLAEQIRHAIENTPCR 304 Query: 210 ISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G IH+T+S G + P+ T + +ADQALY AK +GRN+++ Sbjct: 305 SDQG-LIHLTVSIGVNSVVPSPQGSPV-TFLDQADQALYQAKNNGRNQIM 352 >gi|326796878|ref|YP_004314698.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326547642|gb|ADZ92862.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 317 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 9/165 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG----SYNEKLS---IVFFDIDYFKQINDNFGHPVG 151 ++ Q+S+ D L+ L N + +LG SY + +V DID+FK++ND +GHPVG Sbjct: 151 KLDQMSKTDGLTDLNNRANLDRALGMIFSSYTKNKGTHCLVMADIDHFKKVNDTYGHPVG 210 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++ L FVGR GGEEFA + ++ A +R+ I I + Sbjct: 211 DEVLKDVAKILGGSSRRGDFVGRFGGEEFAILLPNTGKEGAFKYCEKIRETIAKRDIKTA 270 Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 G SI+ITIS G+ E E +S + +AD ALY AK GRN+ Sbjct: 271 QG-SINITISLGVCELSDAEKDVSAWLSKADDALYRAKSEGRNKT 314 >gi|323701212|ref|ZP_08112887.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574] gi|323533814|gb|EGB23678.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574] Length = 337 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 37/261 (14%) Query: 23 SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82 SPH F+ F + ++I +IF +LF G P L +++ L +V + + + + Sbjct: 87 SPHNFITRFGM---LYILGLIF----YLFRFG-QPL-ALIWLVGSILQIVSVGLYLMSMD 137 Query: 83 GYISGSILKELFISY----------NRISQ----LSRIDCLSGLLNHSAFISSL------ 122 S++ L ISY R+ Q LS D L+GL N + L Sbjct: 138 CLYHMSLIPVLIISYLFIGKVLADEERVKQQLQNLSETDQLTGLANFRGLQARLEWCASH 197 Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + LS++ DID FK+ ND +GH G++++ L++ L+ G+ +F+ R GGEEF Sbjct: 198 EAGKGDSLSLIILDIDNFKKYNDTYGHEQGNRLLKELAEYLIFFMGSGVFMARYGGEEFI 257 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYR 239 G ++ A A+ L I N GP +TISAGIA +E + +I + Sbjct: 258 VLLPGVNQDTAKQTADRLVSGIAAHSFN--HGP---VTISAGIASTTSGSREEVFQLIEK 312 Query: 240 ADQALYVAKKSGRNRVVCFSD 260 ADQALY AK++G+N+ V +++ Sbjct: 313 ADQALYRAKRNGKNQAVLYTE 333 >gi|224824142|ref|ZP_03697250.1| diguanylate cyclase [Lutiella nitroferrum 2002] gi|224603561|gb|EEG09736.1| diguanylate cyclase [Lutiella nitroferrum 2002] Length = 528 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 92/182 (50%), Gaps = 17/182 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138 S ++ EL + ++++ L+R D L+GL N A +L E+ S+V DID+ Sbjct: 336 STRLVNELAEANSKLAHLARTDTLTGLPNRRALEEALEQQLQRSRRNGEQASLVLLDIDH 395 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +ND +GH GD VI L + GR GGEEF E+ AA A Sbjct: 396 FKVVNDRYGHDAGDAVIRALGKAMSETIRNVDVAGRWGGEEFLVVLANVDEEGAAAFAER 455 Query: 199 LRKIIENSQINISSGPSIHI--TISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254 LR +E+S ++ G +H+ TIS G+A H+E + RAD+ALY AK GRNR Sbjct: 456 LRTRVESS--TVAHG-ELHVRYTISLGVAPLSTPHRE---AWLKRADEALYRAKLDGRNR 509 Query: 255 VV 256 Sbjct: 510 TA 511 >gi|159184874|ref|NP_354678.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] gi|159140154|gb|AAK87463.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] Length = 356 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 9/184 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL-----SIVFFDIDYFKQIN 143 + ++ + + +++ D L+ L N AF L S Y+ + ++V DID+FK+IN Sbjct: 162 MHQVRLELDEYKRIANTDSLTRLSNRRAFDDRLASVYDSSIGLQYTTLVLLDIDHFKRIN 221 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGHPVGDK++A ++ + FV R GGEEFA G++ +E ++ +R + Sbjct: 222 DTFGHPVGDKILATVASVIRANVRKDGFVARSGGEEFAIILDGNTPEEVMVMCERIRLSL 281 Query: 204 ENSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD- 260 E++ N SG +TIS G A S + AD ALY AK++GRNR V + D Sbjct: 282 ESTPFRNSRSGADYGTVTISIGFASAARASNPSELYGHADTALYHAKETGRNRSVFYEDG 341 Query: 261 IENN 264 ++NN Sbjct: 342 MQNN 345 >gi|299134563|ref|ZP_07027755.1| diguanylate cyclase [Afipia sp. 1NLS2] gi|298590373|gb|EFI50576.1| diguanylate cyclase [Afipia sp. 1NLS2] Length = 398 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 69/192 (35%), Positives = 102/192 (53%), Gaps = 4/192 (2%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126 EN++LV+ SIT LG +S + L ++ I+ + + + D L+GL N A Sbjct: 186 ENINLVM-SITSIGGLGALSLA-LNQVRIARHHQRE-AETDALTGLFNRRALFERSLRLR 242 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 +++ FDID+FKQ+ND GH VGD V+ + L RLGGEEF Sbjct: 243 GSVAVAVFDIDHFKQVNDRHGHQVGDTVLQTFASLLAANVRDGDLAARLGGEEFVIILSE 302 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 ++ +A +A +R+ Q ISS S +T+SAGIA I ++ +AD ALY Sbjct: 303 TTMDQATQIAERVRESFAGQQF-ISSSGSFVVTVSAGIAGGDSDTDIIALLRQADTALYD 361 Query: 247 AKKSGRNRVVCF 258 AK+SGRNRV+ + Sbjct: 362 AKRSGRNRVLLY 373 >gi|171316470|ref|ZP_02905688.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] gi|171098410|gb|EDT43214.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] Length = 506 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 12/175 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151 ++ L+R D L+GL N A ++L E+L S++F D D+FKQ ND +GH G Sbjct: 328 LTNLTRTDPLTGLHNRRALDAALADEWERLQRGSDGSLSVLFIDADHFKQYNDRYGHAQG 387 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 D + FL++ + R GGEEF A + E A +A +R+ +E ++++ Sbjct: 388 DTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDEHGAQQVAEAIRRAVERNRLDG 447 Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 ++ P+ ++I R + + ++AD ALY AK+ GRNR VC +D E+ Sbjct: 448 FDATIPAFTVSIGCATGHRARPASVHALTHQADLALYAAKRDGRNR-VCVADGES 501 >gi|83313514|ref|YP_423778.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1] gi|82948355|dbj|BAE53219.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1] Length = 578 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 87/165 (52%), Gaps = 9/165 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G+ N F + + L + DID+FK+IND GHPVGD Sbjct: 413 LRRLATTDVLTGIFNRRHFMEMARIEVDRARRHGRPLVALMLDIDHFKRINDTHGHPVGD 472 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 I L+D + +GR+GGEEFA + A ++A LR+ + +I Sbjct: 473 VAIKALADVCTQIIRHEDVLGRMGGEEFAIVLTETDLDGALLVAERLRQAVAAIRIPAEL 532 Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 G ++ T S G+AER + I TI+ RAD ALY AK+SGRN+V Sbjct: 533 G-TVAFTTSIGVAERLEGDATIDTILSRADMALYSAKRSGRNKVA 576 >gi|296158018|ref|ZP_06840851.1| diguanylate cyclase [Burkholderia sp. Ch1-1] gi|295891786|gb|EFG71571.1| diguanylate cyclase [Burkholderia sp. Ch1-1] Length = 381 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 113/214 (52%), Gaps = 16/214 (7%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILK--ELFISYNRISQ----LSRIDCLSG 111 YG +++ L V S I L LG ++ L + ++++R+++ L+ ID L+G Sbjct: 169 MYGFGWLMQTGLLQVSPSNVIFLALGILAPLCLSIGVVMLAHDRLAERLERLANIDDLTG 228 Query: 112 LLNHSAFISS----LGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 L+ AF+++ L + + L++ DID FK +NDN+GH GD+V++ + + Sbjct: 229 ALSRRAFLAAGDVLLNASRQTRSPLTMAIIDIDSFKAVNDNYGHAAGDQVLSHFATFVAR 288 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAG 223 T GRLGGEEF ++ EA L + LR ++ + + G + T S G Sbjct: 289 NLRTGDVFGRLGGEEFGVLCPATTTAEAVSLLDRLRIRLASTAPNGLPRG--LRYTFSVG 346 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + E ++ ++ RAD ALYVAK SGRNRV+ Sbjct: 347 VDQLRRDESLAQLMARADGALYVAKASGRNRVMA 380 >gi|316935192|ref|YP_004110174.1| hemerythrin-like metal-binding domain-containing/PAS/PAC sensor -containing diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315602906|gb|ADU45441.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like metal-binding domain [Rhodopseudomonas palustris DX-1] Length = 468 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 101/198 (51%), Gaps = 12/198 (6%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS---- 120 L+ + V + T LLL +G + +E+ ++ +L+ D L+GL N + + Sbjct: 261 LIAAATDVTGAKTSELLLSEANGRLEREVSERTRKLKRLALADPLTGLANRRSLLERIDR 320 Query: 121 ----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 S GS +E LS++F D+D+FK IND GH GD + ++ + FVGRLG Sbjct: 321 EVARSAGSGDE-LSLLFIDVDHFKTINDTLGHAAGDAALIEVARLIEQSLRRTDFVGRLG 379 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236 GEEF A + E A A+ +R+ I + + P +T+S G++ + + + Sbjct: 380 GEEFVAVLAKTGEAGACEAADTIRRTISRHEFDGLGRP---VTVSIGVSSHGSGDDGTAL 436 Query: 237 IYRADQALYVAKKSGRNR 254 + RAD A+ AK+ GRNR Sbjct: 437 LDRADHAMLQAKRDGRNR 454 >gi|311695269|gb|ADP98142.1| sensory box/GGDEF family protein [marine bacterium HP15] Length = 317 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 106/226 (46%), Gaps = 35/226 (15%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN----------------RI 100 P G E + +NL TIS L G +G + K + Y+ ++ Sbjct: 101 PITGTEEYMFQNL-------TISPLSG-TTGEVNKVCLMVYDVTDIASSKMALERANEQL 152 Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++LS D L+GLLN + Y S+V FDID+FK +ND GH GD+ Sbjct: 153 AKLSMTDRLTGLLNRGTWENLVDAEFERFRRYGHTTSLVMFDIDHFKPVNDTHGHLAGDE 212 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 VI + GR GGEEF + + A I+ +R+ IE S + S Sbjct: 213 VIKHTASLTRNAIRQSDSAGRYGGEEFGIILPETDAEGARIICERIRESIEQSVVETSVA 272 Query: 214 PSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVC 257 P I T+S GIA+ +EP + + + +AD+ALY AK+ GRNRVV Sbjct: 273 P-IRYTVSIGIAQ-LTEEPENYMQWMQKADEALYAAKEGGRNRVVV 316 >gi|254457555|ref|ZP_05070983.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207086347|gb|EDZ63631.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 539 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 11/170 (6%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 ++ + ++ D L+ L N S I+ + + LSI+F DID+FK +ND + Sbjct: 372 YVKIKELEHMASTDVLTKLFNRSKLNDVLEKEIALSNAISSPLSIIFIDIDHFKDVNDTY 431 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH VGDKV+ +++ + R GGEEF + A+ILA LR +E Sbjct: 432 GHDVGDKVLIDIANIISSSTRASDIAARWGGEEFMITLQSTDTAHASILAEKLRATVEEY 491 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I ++TIS G+ E + E T I R D+ALY AK+SGRNRVV Sbjct: 492 IFAIVG----NLTISLGVTEYMNNESEETFIKRVDKALYEAKESGRNRVV 537 >gi|299133792|ref|ZP_07026986.1| diguanylate cyclase [Afipia sp. 1NLS2] gi|298591628|gb|EFI51829.1| diguanylate cyclase [Afipia sp. 1NLS2] Length = 355 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 9/165 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N F +L + +E LS++ DID+FK NDN+GH GD+V+ ++ Sbjct: 181 DPLTSLGNRKYFDRALDAAVEHAQQNSEPLSLLMIDIDHFKSFNDNYGHLTGDQVLRLVA 240 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217 L R GGEEFA +S ++A +A+++R+ + + Q+ S I Sbjct: 241 LALKANIKGQDLTARYGGEEFAVILPNTSMRQALAVADNIRRAVMSKQLKKKSTGEILGR 300 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +TISAG++ + +I RAD LY AK+ GRNRV+C +D E Sbjct: 301 VTISAGVSVFQSGDDAPALIDRADACLYAAKRHGRNRVICEADPE 345 >gi|288940063|ref|YP_003442303.1| PAS/PAC sensor-containing diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288895435|gb|ADC61271.1| diguanylate cyclase with PAS/PAC sensor [Allochromatium vinosum DSM 180] Length = 433 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G+LN F ++LS+ DID+FK+IND GH VGD Sbjct: 266 LRELATTDPLTGVLNRRGFSEQAQGRLAGALRDGQELSLAMIDIDFFKRINDTHGHAVGD 325 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + L+ L F +GRLGGEEFA G++ +++ +L + R + + + + Sbjct: 326 QALIHLAGLLRTSFRESDVIGRLGGEEFAVLLPGATLEQSHVLMDRFRMRLAATPLKLHD 385 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + T S G+AE K ++ + AD ALY AK SGRNRV Sbjct: 386 GRWLGFTASIGVAELNPEKAGLAALTKAADSALYAAKHSGRNRV 429 >gi|253687875|ref|YP_003017065.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754453|gb|ACT12529.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 490 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 66/166 (39%), Positives = 88/166 (53%), Gaps = 8/166 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVG 151 R+ Q++ D L+GL+N AF LG+ N + LSI+ DID+FK+IND +GH VG Sbjct: 324 RLEQMATTDKLTGLMNRQAFDYLFRRLGTKNALQHKSLSIILIDIDHFKKINDKYGHNVG 383 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ +S L + R GGEEF A A LR IE + + Sbjct: 384 DMVLKEVSSILSANTRSSDQSCRWGGEEFVILLDDCDINAAQQRAEALRHNIEITPLPYR 443 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G I +T S G+AE E +S +I RAD ALY AK+ GRN+VV Sbjct: 444 EG-IIQVTASCGVAEYRAGETLSMLINRADIALYQAKQQGRNQVVS 488 >gi|190573464|ref|YP_001971309.1| putative GGDEF domain signalling protein [Stenotrophomonas maltophilia K279a] gi|190011386|emb|CAQ45001.1| putative GGDEF domain signalling protein [Stenotrophomonas maltophilia K279a] Length = 554 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 12/203 (5%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 LEY VE L L + + ++ Y L L + + QL+ D L+GL N A + Sbjct: 344 LEY-RVEALQLAVTWLL--MMAAYALNQRLGRLRQQRDELRQLAETDGLTGLPNRRAGLQ 400 Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L + E+ L I F DID FK IND GH VGD+V+ ++ L + V Sbjct: 401 QLARHLERVDRERGPLVIGFLDIDLFKDINDRHGHAVGDQVLVAVARALRAAVRSQDEVV 460 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEP 232 R+GGEEF G + A+ + LR+ I + + P + +T S G+A+ R ++ Sbjct: 461 RMGGEEFLLLMPGMPREAASARLDRLRQRITEAGQALQV-PGLEVTASIGLAQWRPGEDD 519 Query: 233 ISTIIYRADQALYVAKKSGRNRV 255 ++ ++ RAD A+YVAK++GRNRV Sbjct: 520 LAGLLRRADHAMYVAKRAGRNRV 542 >gi|209884911|ref|YP_002288768.1| response regulator protein [Oligotropha carboxidovorans OM5] gi|209873107|gb|ACI92903.1| response regulator protein [Oligotropha carboxidovorans OM5] Length = 457 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 81/160 (50%), Gaps = 11/160 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N L + E+ L+++ DIDYFK IND GH GD V+ + Sbjct: 295 DPLTGLHNRRYLEGHLATLAEQAAVRGKPLALMILDIDYFKSINDTHGHDAGDDVLREFA 354 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218 ++ R GGEEF + + A I+A LR+ I N I G I + Sbjct: 355 SRIRKSVRGIDLAARYGGEEFVIVMPETDQHVAGIIAERLRRAIANEAFPIEKGAKQIEV 414 Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TIS G+A E H EP+ ++ RADQALY AK GRNRVV Sbjct: 415 TISVGLATLETKH-EPVGDVLKRADQALYRAKHDGRNRVV 453 >gi|78484367|ref|YP_390292.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78362653|gb|ABB40618.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] Length = 423 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 12/178 (6%) Query: 91 KELFISYNRI-SQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142 +E + N+I QLS D L+ L N L ++K S++ DID FK++ Sbjct: 246 REDLLHKNKILEQLSTTDPLTQLCNRLKIERVLEDLHQKYEDEQQIYSLLLIDIDCFKKV 305 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH VGD+V+ LS++L F +GR GGEEF + ++A + A R+ Sbjct: 306 NDTYGHTVGDEVLKELSERLKQSFTQHGHIGRWGGEEFIVILENETLEQAVVAAETFRQK 365 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 EN+ I G ++T+S G+A + IS +I+ AD LY +K +GRNRV +S+ Sbjct: 366 TENTSF-IEVG---NLTVSIGVATVTSAQTISELIHSADLGLYESKHAGRNRVTVYSN 419 >gi|188581186|ref|YP_001924631.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium populi BJ001] gi|179344684|gb|ACB80096.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium populi BJ001] Length = 298 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 11/161 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+ LLN AF+ +K L + DID+FK+IND +GH VGD I Sbjct: 131 RLAETDPLTALLNRRAFLQRTRDAAQKAGPFGNLCAILLDIDHFKRINDEYGHDVGDAAI 190 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L+ G GRLGGEEFA G A +A+ LR + +I GP Sbjct: 191 KAVAG-LIEPEG---IAGRLGGEEFAVIVAGHPLAAAEAIASRLRLKASDLRIRSPKGP- 245 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +T S G++E E + ++ RAD ALY AK +GRNRVV Sbjct: 246 VRLTCSFGVSEWSDGETVEGLLKRADIALYEAKATGRNRVV 286 >gi|219846990|ref|YP_002461423.1| diguanylate cyclase with PAS/PAC sensor [Chloroflexus aggregans DSM 9485] gi|219541249|gb|ACL22987.1| diguanylate cyclase with PAS/PAC sensor [Chloroflexus aggregans DSM 9485] Length = 728 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 110/221 (49%), Gaps = 33/221 (14%) Query: 59 YGLEYILVENLS----LVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLL 113 +GL YI E L +V+ TI L L ++ + L+E I ID L+GL Sbjct: 513 FGLLYIAGEELPRSELIVMTGDTIKLALSNLALRATLREQAI----------IDPLTGLY 562 Query: 114 NHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N +SL + E+ L++ DID+FKQ ND +GH GD ++ +L V+F Sbjct: 563 NRRYLETSLSRELHRAQREQIPLTVAMIDIDHFKQFNDQYGHDAGDTLLR----ELAVIF 618 Query: 167 GTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + R GGEEF G ++ A LR++++ QI + P ITIS Sbjct: 619 REHLRQSDLACRFGGEEFVLILPGVNQATAQTRLQHLREVVQQRQIIFAGAPLRPITISI 678 Query: 223 GIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDI 261 G C KE I ++ RAD ALY AK+SGRNRV+ FS++ Sbjct: 679 GYFT-CEKEEIEPHILLQRADAALYAAKRSGRNRVIDFSNL 718 >gi|237729697|ref|ZP_04560178.1| response regulator [Citrobacter sp. 30_2] gi|226908303|gb|EEH94221.1| response regulator [Citrobacter sp. 30_2] Length = 558 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 65/162 (40%), Positives = 86/162 (53%), Gaps = 12/162 (7%) Query: 99 RISQLSRIDCLSGLLNHSA----FISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVG 151 R+SQ D LSGL NHS S++ N +V D+D FK IND +GH VG Sbjct: 396 RMSQ----DSLSGLYNHSTTTHFLKSAIAESNYSGNPFCMVMVDLDRFKSINDTYGHAVG 451 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI +S + VGR GGEEF +S +AA + LR+ E +++ Sbjct: 452 DQVIVGISQLFSHRLRSTDIVGRYGGEEFVIIMPNTSSDKAARVVERLRRDYEQVTFSVN 511 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 S H T SAGIA+ + I T+ RADQALY AK++GRN Sbjct: 512 DA-SFHSTFSAGIAQWQFGDRIETLRERADQALYAAKQNGRN 552 >gi|83594703|ref|YP_428455.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170] gi|83577617|gb|ABC24168.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain [Rhodospirillum rubrum ATCC 11170] Length = 492 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 9/166 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G LN AF+ + + E +++ DID+FK++ND GH GD Sbjct: 327 LRRLATTDPLTGALNRRAFMEAARRDLALAQRHGEPVTVALADIDHFKRVNDQHGHATGD 386 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + + +GR+GGEEFA ++ A +LA+ LR+ + N ++ S Sbjct: 387 EALKTFVATVHGALRASDVLGRMGGEEFALILPHTALASAMLLADRLRQTLANLRVPCPS 446 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G + T+S G+AE H I T++ AD+ALY AK +GRNRV+ Sbjct: 447 G-EVEFTVSIGLAELGTHGTTIDTLLQAADEALYRAKSAGRNRVIA 491 >gi|117918726|ref|YP_867918.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117611058|gb|ABK46512.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 485 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 73/210 (34%), Positives = 108/210 (51%), Gaps = 23/210 (10%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLL 113 L F+G NL+L ++ +TI +LL IS L Y R + ++ D L+G Sbjct: 288 LNTFWG-------NLALSLL-VTIGILL--ISNMTLGR----YQRKLEVMASTDKLTGAA 333 Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N F EK +SI+ DID+FK++ND++GH +GD V+ +++ L Sbjct: 334 NRQVFEEYFHQALEKAKLSQAPISILLVDIDHFKKVNDSYGHSIGDLVLKTVANLLRSQL 393 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 + R GGEEF +AA LA R +I ++ ++ G I IT+S G+AE Sbjct: 394 KNQDVLCRWGGEEFLILVPEQDLSQAAELAEQFRDLISQRELKVN-GVHIAITVSIGVAE 452 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 EP +I RAD ALY AK++GRN+VV Sbjct: 453 YQKLEPAEDLIKRADLALYQAKEAGRNQVV 482 >gi|254448933|ref|ZP_05062388.1| diguanylate cyclase [gamma proteobacterium HTCC5015] gi|198261470|gb|EDY85760.1| diguanylate cyclase [gamma proteobacterium HTCC5015] Length = 384 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 8/184 (4%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIV 132 LL ++ S ++ + + QLS D L+ + N + L S + +LS++ Sbjct: 199 LLVAMNSSAIRRWRQRESEVRQLSTTDPLTQVANRRHLLERLNLEISRCERSGHSELSLL 258 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK IND GH GD+ + + L VGR GGEEF + Q A Sbjct: 259 MMDLDHFKSINDEHGHLFGDEALRVTARVLREQSRNTDLVGRYGGEEFCLLLPDTGPQGA 318 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 +A R+ +E + I+ G +HIT S G+A + ++++RAD+ALY AK+ GR Sbjct: 319 LQIAERCRQALEQADIDREDGEVLHITTSIGLATYQMGDTNESLLHRADEALYQAKEQGR 378 Query: 253 NRVV 256 NR+V Sbjct: 379 NRIV 382 >gi|254230006|ref|ZP_04923406.1| ggdef domain protein [Vibrio sp. Ex25] gi|151937447|gb|EDN56305.1| ggdef domain protein [Vibrio sp. Ex25] Length = 320 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S++SR D L+GL N + + SL + S+V FDID+FK++ND +GHP GD Sbjct: 152 LSEISRKDGLTGLFNRAYWEQSLKEEFAHLKVIDGPCSLVIFDIDHFKKVNDTYGHPTGD 211 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI S L + GR GGEEF +++++A A LRK IE + + Sbjct: 212 EVIRRTSSLLRKTARSSDVCGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQEIVKVED 271 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ TIS G+ E + + E + + AD ALY AK++GRN+ Sbjct: 272 F-LINYTISIGVCEYKPYFETHTQWLKSADAALYRAKENGRNQT 314 >gi|325293076|ref|YP_004278940.1| diguanylate cyclase [Agrobacterium sp. H13-3] gi|325060929|gb|ADY64620.1| diguanylate cyclase [Agrobacterium sp. H13-3] Length = 356 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 96/179 (53%), Gaps = 8/179 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL-----SIVFFDIDYFKQIN 143 ++++ + + +++ D L+ L N AF L S YN + +++ DID+FK+IN Sbjct: 162 MQQVRLELDEYKRIANTDSLTRLSNRRAFDDRLASVYNSSIGLQYTTLILLDIDHFKRIN 221 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGHPVGDK++A ++ + FV R GGEEFA G++ +E ++ +R + Sbjct: 222 DTFGHPVGDKILATVASVIRANVRKDGFVARSGGEEFAIILDGNTPEEVMVICERIRLSL 281 Query: 204 ENSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 E++ N SG +TIS G A + AD ALY AK++GRNR V + D Sbjct: 282 ESTPFRNSRSGADYGTVTISIGFASASQANNPGELYGHADMALYHAKETGRNRSVIYED 340 >gi|323136938|ref|ZP_08072018.1| diguanylate cyclase [Methylocystis sp. ATCC 49242] gi|322397699|gb|EFY00221.1| diguanylate cyclase [Methylocystis sp. ATCC 49242] Length = 260 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 98/182 (53%), Gaps = 2/182 (1%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-SLGSYNEKLSIV 132 I I I++ L ++ +L + + +R+ L + D L+G+L + F+ + ++++ + Sbjct: 62 IPIFITVPLAFVVFYMLLLITRTIDRVGALIQFDPLTGVLTRAHFLGETQRAFSQGGVFM 121 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D D+FK+IND +GH +GD + L+ L G FVGRLGGEEF ++ A Sbjct: 122 MVDADHFKKINDTYGHDLGDSALKTLASSLTASVGDSGFVGRLGGEEFGVFLPRATSALA 181 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 ++A +R + S I G +I +T+S G AER + I AD LY AK++GR Sbjct: 182 LLMAQTIRTTVRASGAVI-DGRAIGLTVSIGAAERRPGRSLDDAIKAADMLLYAAKRAGR 240 Query: 253 NR 254 +R Sbjct: 241 DR 242 >gi|86358001|ref|YP_469893.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] gi|86282103|gb|ABC91166.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] Length = 355 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/183 (35%), Positives = 98/183 (53%), Gaps = 18/183 (9%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK-----LSIVFFDIDYFKQI 142 + KEL Y RI+ D L+ L N AF L + +N +++ DID FK+I Sbjct: 165 VRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKKI 220 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHPVGDK++A ++ + +FV R GGEEFA G++ +E +A +R+ Sbjct: 221 NDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVTAIAERIRRT 280 Query: 203 IE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +E NS+ ++ GP IT+S GI + E + + D ALY AK +GRN +V Sbjct: 281 LETTPFKNSRTRVNYGP---ITVSIGICMASNAEDAGELYSKTDIALYGAKNAGRNCIVL 337 Query: 258 FSD 260 + D Sbjct: 338 YQD 340 >gi|77362279|ref|YP_341853.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis TAC125] gi|76877190|emb|CAI89407.1| putative GGDEF domain membrane protein [Pseudoalteromonas haloplanktis TAC125] Length = 306 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 5/161 (3%) Query: 98 NRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R+ +L+ +D L+G N A + S +L + D+DYFKQIND +GH VGDKV Sbjct: 135 KRLKKLAMLDPLTGAGNRLAMNHYFSVELRERAQLYLFLVDLDYFKQINDKYGHDVGDKV 194 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L V F +V R+GGEEFA + +SE A +A +R +EN IN+ + Sbjct: 195 LIEVATLLKVTFAKG-YVFRVGGEEFALISSFNSEHAALAVAEKVRAALENKYINVDN-Y 252 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I++T S G+A ++ ++ ++ AD+ LY AK GRN V Sbjct: 253 KINLTASIGVANYKPQQSLNELLKAADKQLYKAKDLGRNSV 293 >gi|260774121|ref|ZP_05883036.1| diguanylate cyclase (GGDEF domain) [Vibrio metschnikovii CIP 69.14] gi|260611082|gb|EEX36286.1| diguanylate cyclase (GGDEF domain) [Vibrio metschnikovii CIP 69.14] Length = 486 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 12/161 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 DCL+GL N + ++ L +I+ DIDYFK+IND +GHP+GD+V+ ++ Sbjct: 327 DCLTGLFNRAYLSGLIQLELTRLRKVEGVSAILLIDIDYFKRINDTYGHPIGDQVLCCVA 386 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L V R GGEEF S Q+A A +LR + S++ P + I Sbjct: 387 HSLNQNIREGDAVARFGGEEFMVLLPNISLQDAVEHAENLRLAV--SELTFPCLPQEVSI 444 Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T+S GI+ + PI T + AD+ALY AK SGRNRVVC Sbjct: 445 TVSIGISLLDITKDNPIETAYFDADRALYRAKSSGRNRVVC 485 >gi|255524887|ref|ZP_05391836.1| diguanylate cyclase [Clostridium carboxidivorans P7] gi|255511457|gb|EET87748.1| diguanylate cyclase [Clostridium carboxidivorans P7] Length = 521 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 92/185 (49%), Gaps = 24/185 (12%) Query: 92 ELFISYNRISQ----LSRI----------DCLSGLLNHSAFISSLGSYNEK-------LS 130 EL ++ N++ Q L R+ D L+G+ N + L +K L+ Sbjct: 337 ELVVTQNKLKQANDELKRLNEELYSDSIKDGLTGVYNKKYITTLLQEEIKKTLKSSIPLT 396 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 I DID+FK+INDN+GH GDKV+ L+D + G GR GGEEF + + Sbjct: 397 IAMIDIDHFKKINDNYGHLTGDKVLKKLADLVTTELGLNEKFGRFGGEEFLILMFDTQLK 456 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 + L +R + N + HITIS GIAE + IS++I RAD LY AK + Sbjct: 457 DGYELCEKIRSKVSNYKFEYECS---HITISIGIAELKCDDSISSLIKRADDCLYKAKFN 513 Query: 251 GRNRV 255 GRN++ Sbjct: 514 GRNKI 518 >gi|148255364|ref|YP_001239949.1| hypothetical protein BBta_3973 [Bradyrhizobium sp. BTAi1] gi|146407537|gb|ABQ36043.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] Length = 355 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 86/165 (52%), Gaps = 9/165 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F + + N+ LS++ FDID+FK ND+FGH GD+V+ + Sbjct: 181 DPLTGLGNRKYFDRMIEMAVEGGLTSNQPLSLLMFDIDHFKSFNDSFGHLTGDQVLRLVG 240 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217 L R GGEEFA + ++A +A+ +R+ + ++ S I Sbjct: 241 MSLKNAIKGQDIAARYGGEEFAVVLPNTPLRQALTVADQIRRAVTARELKKKSTGEILGR 300 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +TIS G++ + +I RAD LY AK+SGRNRV+C SD E Sbjct: 301 VTISVGVSMLRPGDDTDALIERADACLYAAKRSGRNRVICESDPE 345 >gi|260779563|ref|ZP_05888453.1| putative sensory box/ggdef family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260604372|gb|EEX30676.1| putative sensory box/ggdef family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 328 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 102/181 (56%), Gaps = 12/181 (6%) Query: 91 KELFISYNRISQLSRI---DCLSGLLNHSAFISSL----GSYNE---KLSIVFFDIDYFK 140 +++ +Y R +L R+ D L+G+ N AF+ +L SYNE LS + DID+FK Sbjct: 130 RDITSNYRRQEELKRLSETDELTGIFNRRAFLEALEQELQSYNETQRNLSCLMIDIDHFK 189 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND GH GD+VI ++ ++GRLGGEEF ++ +A +A +R Sbjct: 190 EINDQVGHLSGDEVITQVARICQKQIRGSDYIGRLGGEEFGIVLSNTNAIQAYDIAERIR 249 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + IE+S ++ IH T+S GIAE + ++ +AD+A+Y +K++GRN+V + Sbjct: 250 QSIESSPCSVDDH-IIHPTVSIGIAEVTSGISHVKELLVQADKAMYYSKQTGRNQVTLYH 308 Query: 260 D 260 D Sbjct: 309 D 309 >gi|320332968|ref|YP_004169679.1| response regulator receiver modulated diguanylate cyclase [Deinococcus maricopensis DSM 21211] gi|319754257|gb|ADV66014.1| response regulator receiver modulated diguanylate cyclase [Deinococcus maricopensis DSM 21211] Length = 463 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 15/173 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+ ID L+GL N ++++ L Y S++ DID+FK++ND +GH G Sbjct: 277 RLYELATIDDLTGLANKRSWLTRLDDALALARRYGHPTSVLIVDIDHFKRVNDTYGHLAG 336 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ L +L +GR GGEE A + A ++A LR + N+ + Sbjct: 337 DELLRALGQELRAQARASDLIGRYGGEELVALLPHTDSAGALVMAERLRAAVHNTHLTW- 395 Query: 212 SGPSIHITISAGIAE-------RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G +I +T S G+A H + S ++ RAD ALY AK+ GRNR V Sbjct: 396 QGEAIRVTASIGLATLIPMPGGPPHGDAASDLLGRADLALYEAKRGGRNRTVV 448 >gi|284050515|ref|ZP_06380725.1| response regulator receiver modulated diguanylate cyclase [Arthrospira platensis str. Paraca] Length = 311 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 89/176 (50%), Gaps = 9/176 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144 EL + + +L+ D L+G+ N + Y S++ DID+FK IND Sbjct: 134 ELKQALVELEKLATTDPLTGIANRRHLLVLGEREFQRTHRYKNPFSVLMIDIDHFKLIND 193 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH +GDK + +SD V GR GGEEF + EA ++A +R+ I Sbjct: 194 NYGHSIGDKALKIMSDVTVNALRKVDIFGRFGGEEFVVFLPETKADEALVVAERIREAIA 253 Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 + I + +IHIT+S G+ E + ++ AD+ALY AKK GRN+VV + Sbjct: 254 TTPIYVDDQ-TIHITVSIGVTIYNSSEISLDGLLMEADKALYDAKKQGRNQVVIYP 308 >gi|220922753|ref|YP_002498055.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060] gi|219947360|gb|ACL57752.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060] Length = 628 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 83/154 (53%), Gaps = 5/154 (3%) Query: 107 DCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GLLN S GS ++K+ ++ DID+FK IND +GH GD+V+ +++ L Sbjct: 445 DGLTGLLNRRMLDRLAQSPPGSADDKVCLILIDIDHFKAINDTYGHATGDRVLIQMAELL 504 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 V + R GGEEFA G+ A +A +R ++ ++ G + +T S Sbjct: 505 QSVLRASDVIARFGGEEFAVLVPGADLSGAITVARKVRIALQRARFTTPDGTPVRVTASF 564 Query: 223 GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 G+A R +E ++ AD+ALY AK GRNRV Sbjct: 565 GVARGRRGQEAWPCLVELADEALYRAKSDGRNRV 598 >gi|86356126|ref|YP_468018.1| hypothetical protein RHE_CH00470 [Rhizobium etli CFN 42] gi|86280228|gb|ABC89291.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 392 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 7/192 (3%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124 E+LSL I I +G +S ++ + + +R+ ++ D L+GLLN A G+ Sbjct: 187 EDLSLAI-CIAGMTGIGALSLALHQWRLAARHRLEAIT--DPLTGLLNRRAVFDEYGTRP 243 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 +++ FDID+FK +ND +GH GD+VI +D+L RLGGEEFA Sbjct: 244 MGTTAAVIVFDIDHFKSVNDRYGHAAGDRVITVFADELTAHCRPGDTAARLGGEEFALVL 303 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243 A + A +R+ E +I I G + T+S G+A R ++ AD+A Sbjct: 304 KEIMPGRAELTAERIRRAFEAREIPI-DGEVLKCTVSVGVAPGRSTPLDFDAMLSAADKA 362 Query: 244 LYVAKKSGRNRV 255 LY AK+ GRNRV Sbjct: 363 LYAAKRGGRNRV 374 >gi|117922283|ref|YP_871475.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117614615|gb|ABK50069.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 380 Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/183 (37%), Positives = 94/183 (51%), Gaps = 21/183 (11%) Query: 97 YNR------ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 YNR + + SR D L+G+ N F S L S + +++ DID+FK+IN Sbjct: 195 YNRYCLELALEKGSRTDPLTGVANRRHFDSLLKSEVNRNSRFGSACALIILDIDFFKRIN 254 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GHP GD VI L++ V + V RLGGEEFA ++ A L +R + Sbjct: 255 DTYGHPTGDSVICSLANFCVTLSRETDLVARLGGEEFAIILPDTNISSAKNLGERIRLHV 314 Query: 204 ENSQINISSGPSIHITISAGI-AERCHK------EPIS-TIIYRADQALYVAKKSGRNRV 255 EN + +G + TIS GI A + HK E I+ +I AD ALY AKK GRNR Sbjct: 315 ENQSLISETGEKVIWTISLGISALQEHKITKNNNEFIAEQLIQHADTALYEAKKGGRNRT 374 Query: 256 VCF 258 V + Sbjct: 375 VLY 377 >gi|289644991|ref|ZP_06477029.1| diguanylate cyclase [Frankia symbiont of Datisca glomerata] gi|289505206|gb|EFD26267.1| diguanylate cyclase [Frankia symbiont of Datisca glomerata] Length = 178 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 10/170 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + + + + D L+GL N F + S + + LS DIDYFK++ND +GH Sbjct: 10 FEEVQRHAATDQLTGLANRRHFLEQAERAVKSHAATDLPLSAAMMDIDYFKRVNDAYGHS 69 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+A ++ ++ +GR+GGEEF A + A LA LR + + +N Sbjct: 70 VGDEVLAEIARRIRSSLRGEEILGRIGGEEF-AVLMSVPASTATALAERLRAAVAHRPVN 128 Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S GP + I +S G+A H + ++ RADQALY AK+ GR++V Sbjct: 129 TSIGP-LDIRLSIGLAHLAPHDTDLRDLLDRADQALYTAKRGGRDQVAVH 177 >gi|59713335|ref|YP_206110.1| GGDEF domain-containing protein [Vibrio fischeri ES114] gi|59481583|gb|AAW87222.1| GGDEF domain protein [Vibrio fischeri ES114] Length = 483 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 90/164 (54%), Gaps = 11/164 (6%) Query: 101 SQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 S+L+ D L+G N +FI + + N+ S+ FDIDYFKQIND +GH +GD+ Sbjct: 318 SKLALFDDLTGSCNRRCFEAKVLSFIQNYHAKNQTFSVALFDIDYFKQINDTYGHEIGDE 377 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ S + + RLGG+EF + EA + N+L + I N +I I +G Sbjct: 378 VLRLFSRACENICESDDHFARLGGDEFVMLLSNKNRDEAEAILNELLRSIRNIEIRI-NG 436 Query: 214 PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 + +T S G++E H + ++ RAD+ALY AK+ GRN+V Sbjct: 437 QLVQLTSSIGVSE-MHDDVFDACKLLSRADEALYEAKRLGRNQV 479 >gi|218437187|ref|YP_002375516.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] gi|218169915|gb|ACK68648.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] Length = 322 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDN 145 L ++Y + +L+ D L+G+ N A ++ Y+ S++ D+DYFK+IND+ Sbjct: 142 LKMAYAELEKLANTDPLTGVANRRALLNFGEQEFYRAQRYHCPFSLLIIDLDYFKKINDS 201 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH +GD + +++ + +GR GGEEF G+ ++A I+A + ++I Sbjct: 202 YGHDIGDLALKTVTEAVNKAIRKIDLLGRFGGEEFVVILPGTKLKDACIVAQRICRLISE 261 Query: 206 SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259 +++ ++++T S G+A K+ I+ II+RADQ LY AK GRN+VV + Sbjct: 262 VSLSVEQ-KTLNMTASIGVAAYNKKDKTINEIIHRADQGLYQAKNQGRNQVVVYD 315 >gi|261823793|ref|YP_003261899.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] gi|261607806|gb|ACX90292.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] Length = 489 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/180 (37%), Positives = 95/180 (52%), Gaps = 16/180 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSL-GSYNEKLSIVFFDIDYFKQINDNFGHP 149 RI +S D L+G+LN + I+S+ N+ +S++ DID+FK+IND +GH Sbjct: 308 KRIELISNHDALTGMLNRRSLNQHMMNIINSIRDGENKMMSLLVLDIDHFKKINDTYGHA 367 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD VI S + + R GGEEF G S+ E +A +R IIE S + Sbjct: 368 VGDNVIRGFSTAIKQHTRPQDLLCRWGGEEFLIIIQGLSKNECLEIAERIRTIIEGSSLA 427 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 IS+G ++ T S G++ ER E AD+ LY+AK+ GRNRV SDI N+ Sbjct: 428 ISNGHAVRCTTSIGVSFFHLERI--EDFHDAFKEADKLLYIAKEQGRNRVN--SDINVNS 483 >gi|126664680|ref|ZP_01735664.1| two-component response regulator protein [Marinobacter sp. ELB17] gi|126631006|gb|EBA01620.1| two-component response regulator protein [Marinobacter sp. ELB17] Length = 379 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 16/224 (7%) Query: 44 FIANIFLFYIGLT----PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99 F+ + LF+ L F L L + L ++ + + +S G +S + + F+S + Sbjct: 145 FVIPLMLFFAALAIVDLEFKQLIPFLFDPLVMIFLGMVVS---GSLS-QLRRSEFLSRQQ 200 Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L+GLLN A SL + S++ D+D FK++ND++GH VGD Sbjct: 201 LKSLASTDQLTGLLNRHAIHKSLEQLVARHARHGHPFSLILGDLDKFKRVNDSYGHNVGD 260 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ +++L + R GGEE + A +A LR I + + + Sbjct: 261 EVLIETANRLQDHVRAGDILCRWGGEELLVVLPDTERDSALAVAEKLRCAIGEAPMT-AG 319 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G SI TIS G+ + E I T I RAD ALY+AK+ GRNRVV Sbjct: 320 GHSIEQTISFGVTCYHNGEHIDTTIMRADSALYLAKQGGRNRVV 363 >gi|256829265|ref|YP_003157993.1| response regulator receiver modulated diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gi|256578441|gb|ACU89577.1| response regulator receiver modulated diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] Length = 335 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 7/176 (3%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 I ++L S R +LS D L+GL N F + YN LS+ DID FK+ Sbjct: 159 IEEDLRRSEMRYKELSLTDELTGLYNARHFFRQVQAEVERATRYNSPLSLCVIDIDKFKR 218 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD V+A L + + R GGEEF + +EAA +A +R Sbjct: 219 YNDTYGHLCGDAVLAELGRLIQKLIRDADSAYRYGGEEFIIVLPETPREEAARVAERIRT 278 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +H+++S G+ C E +S ++ RADQ +Y AKK GRN VC Sbjct: 279 TFFEHSFYPKNAQGVHVSLSLGVTSYCPGESVSDLVDRADQNMYAAKKCGRNTTVC 334 >gi|163751842|ref|ZP_02159057.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Shewanella benthica KT99] gi|161328258|gb|EDP99420.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Shewanella benthica KT99] Length = 402 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 79/129 (61%), Gaps = 3/129 (2%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L++ DID+FK++ND +GH VGD+V+ + +L FG V R GGEEF A G + Sbjct: 274 LTVALLDIDFFKKVNDTYGHDVGDEVLVEFAARLKHFFGQHFTVSRFGGEEFTVAFKGLN 333 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 +++A +L + R +E I S G + IT+S GIA + + +I RAD+ALY AK Sbjct: 334 QEKAFVLMDKFRSQLEMKPIVTSKG-EMFITVSTGIAG-LADDSLDGLIQRADKALYDAK 391 Query: 249 KSGRNRVVC 257 KSGRN +VC Sbjct: 392 KSGRN-LVC 399 >gi|310639911|ref|YP_003944669.1| diguanylate cyclase and metal dependent phosphohydrolase [Paenibacillus polymyxa SC2] gi|309244861|gb|ADO54428.1| Diguanylate cyclase and metal dependent phosphohydrolase [Paenibacillus polymyxa SC2] Length = 616 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 95/175 (54%), Gaps = 10/175 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143 K++F Y I + + D +GL NHS F ++L S N LS+ DID FK+ N Sbjct: 230 KQMFTMYREIEEKANTDRRTGLYNHSYFENTLEAELNISRSQNTPLSLALIDIDDFKKYN 289 Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D+FGH GD+++ FL + L FGT + V R GGEEF + ++A N +RK Sbjct: 290 DHFGHLKGDQLLGFLGEFLKRETFGTHITVSRYGGEEFTLLMPDHTAEQAYEKVNAIRKR 349 Query: 203 IENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +S+ + P ++ SAGIA+ R S ++ AD+ALY AKK G+N V Sbjct: 350 LNDSRYEGVEIFPHGCLSFSAGIAQSRIDIYDKSQLVDLADKALYYAKKQGKNIV 404 >gi|237798898|ref|ZP_04587359.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021752|gb|EGI01809.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 249 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 12/215 (5%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L P L+ + + + V + + +++G++S + +L N + +LSR D L+GLLN Sbjct: 26 LNPVVNLQGNMAQIYACVPVLVIYPIVIGWLSHQVTLKLCEHRNILRKLSRTDSLTGLLN 85 Query: 115 HSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 H A F S +Y + I DID+FK +ND +GH +GD V+ +S+ L+ Sbjct: 86 HGAWKDLLDLEFTKSQNAY-QHCVIALIDIDHFKVVNDTYGHIMGDTVLQNISEALLDNL 144 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 +GR GG+EF +S +A +R I+ ++ S + +++S GIA Sbjct: 145 RDSDLIGRCGGDEFCVILPDTSLIQARETLERMRLAID--KMTHSRHCDLKVSLSIGIAA 202 Query: 227 -RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ ++ AD+ALY+AK +GRNR+V D Sbjct: 203 YMSEMSDAASWLHEADKALYLAKSTGRNRIVSAKD 237 >gi|153832405|ref|ZP_01985072.1| ggdef domain containing protein [Vibrio harveyi HY01] gi|148871434|gb|EDL70297.1| ggdef domain containing protein [Vibrio harveyi HY01] Length = 320 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 91/169 (53%), Gaps = 9/169 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152 +S++SR D L+GL N + + SL +L S+V FDID+FK++ND +GH GD Sbjct: 152 LSEISRKDGLTGLFNRAYWEQSLKEEFAQLKVIEGASSLVIFDIDHFKKVNDTYGHHTGD 211 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI S L + GR GGEEF +++++A A LRK IE + + Sbjct: 212 EVIRRTSSLLRKTARSSDICGRFGGEEFTVLLPHTNQEQANYFAERLRKRIEQEIVKVEE 271 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I+ TIS G+ E + + E + + AD ALY AK+SGRN+ D Sbjct: 272 FL-INYTISIGVCEYKSYFESHTQWLKSADAALYRAKESGRNQTCNHED 319 >gi|92117845|ref|YP_577574.1| diguanylate cyclase [Nitrobacter hamburgensis X14] gi|91800739|gb|ABE63114.1| diguanylate cyclase [Nitrobacter hamburgensis X14] Length = 354 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 9/171 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S D L+GL N F ++ LS++ FDID+FK NDN+GH GD+V+ Sbjct: 177 SMTDPLTGLGNRKYFDRAVEDAVALAIGEGGPLSLLLFDIDHFKSFNDNYGHLTGDQVLR 236 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L R GGEEFA ++ +A +A+ +R+ + ++ S I Sbjct: 237 LVAMSLKQTIKGQDITARYGGEEFAVVLPNTALSQALTVADHIRRAVMAKELKKKSTGEI 296 Query: 217 --HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 +TIS G++ H + ++I RAD LY AK++GRNRV+C +D E +T Sbjct: 297 LGRVTISVGVSLLRHGDTPDSLIERADSCLYAAKRNGRNRVICEADPECST 347 >gi|224373317|ref|YP_002607689.1| putative diguanylate cyclase [Nautilia profundicola AmH] gi|223588394|gb|ACM92130.1| putative diguanylate cyclase [Nautilia profundicola AmH] Length = 462 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 116/220 (52%), Gaps = 16/220 (7%) Query: 48 IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY---NRISQLS 104 I+ +I +T Y Y L + L +V +S I + L Y + KE+ + +LS Sbjct: 243 IYKKWIHVT--YQQGYSLKQVLLIVFVSFIIIVALVYWIRMLKKEINKRKEIEKELQKLS 300 Query: 105 RIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 ID L+G+ N ++L SY+++ LS++FFDID+FK+IND +GH +GDK++ Sbjct: 301 IIDSLTGIFNRYKIDTALKQQISYSKRHHLPLSVIFFDIDHFKKINDTYGHRIGDKILKE 360 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++D + GR GGEEF ++ +A +A L+ +IEN + G Sbjct: 361 IADIIKHSLREYDIFGRWGGEEFIIILPNTNLLQAIKVAKKLKSLIENHRFKYIDG---- 416 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +T S G+ E ++ +I+ R D +Y AKK GRN++V Sbjct: 417 LTCSFGVTELMPEDNSDSILIRVDSFMYEAKKRGRNQIVS 456 >gi|330503452|ref|YP_004380321.1| GGDEF [Pseudomonas mendocina NK-01] gi|328917738|gb|AEB58569.1| GGDEF precursor [Pseudomonas mendocina NK-01] Length = 618 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 10/177 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 +EL + +R+ LS D L+G+ N F L E L++ D+D+FK N Sbjct: 438 EELQVLNSRLEMLSLTDALTGIANRRHFDEVLAKECKRALRVGEPLALAVLDVDWFKTYN 497 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D++GHP GD + ++ L V R GGEEF A + A +A L + Sbjct: 498 DHYGHPAGDSCLQQIAHTLAATISRSTDLVARYGGEEFVFLAPSTGLAGAQSMAEKLVRA 557 Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +E + P ++TIS GIA R P ++ RAD ALY AK GRNR+ C Sbjct: 558 VEALALPHERSPLGYVTISVGIALMPRDADSPAQALLQRADAALYRAKSQGRNRLAC 614 >gi|220933869|ref|YP_002512768.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] gi|219995179|gb|ACL71781.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] Length = 306 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 23/207 (11%) Query: 58 FYGLEYILVENL-SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 F E VENL S++I + SLL Y + + ++ D L+GL N + Sbjct: 111 FREEELTEVENLLSVLIYPLRNSLL---------------YRQAVEAAQTDTLTGLYNRA 155 Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 A +++L + L+++ DID+FK+IND GH GD+V+ +D L Sbjct: 156 ALDHLLPRELAALRRGQQHLALLVVDIDHFKRINDTLGHSAGDQVLKAAADCLQEATRES 215 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 + R GGEEF S ++A + +R+++ N + S+ P +T S G+A Sbjct: 216 DMLFRYGGEEFVMLMSTESPEDALLAGERIRRVLRNCEALQSAAPGFTLTASIGVAMARP 275 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ RADQA+Y AK++GR+RVV Sbjct: 276 TDSAFSLFDRADQAMYTAKQAGRDRVV 302 >gi|83310427|ref|YP_420691.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1] gi|82945268|dbj|BAE50132.1| GGDEF domain [Magnetospirillum magneticum AMB-1] Length = 395 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 15/228 (6%) Query: 44 FIANIFLFYIGL---TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100 IA L IGL +P + + + N ++ ++ SL G+ ++KE + + Sbjct: 158 LIALTALARIGLAWSSPAWDPQSAALANQAMFLLGYVFSLCDGFSFLLLVKE--DADRSL 215 Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVGD 152 +++ ID L+G+ N + F+ L +L S+V D+DYFK++ND FGH GD Sbjct: 216 LRMATIDQLTGIPNRAHFLD-LAEDRRRLCLRSGQAVSVVMMDVDYFKRVNDEFGHSAGD 274 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + L GRLGGEEFA G+S A +A+ LR I+ ++ + Sbjct: 275 EVLRRVGCALREHLRDVDVFGRLGGEEFAIVLPGTSLAAAVPVADRLRAILAGLEVETAK 334 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + IT+S GIA+ + + AD LY AK +GRN+VV S+ Sbjct: 335 G-TTRITVSMGIADLGGGRSLELAMSEADGRLYRAKAAGRNKVVAVSE 381 >gi|297529998|ref|YP_003671273.1| diguanylate cyclase and metal dependent phosphohydrolase [Geobacillus sp. C56-T3] gi|297253250|gb|ADI26696.1| diguanylate cyclase and metal dependent phosphohydrolase [Geobacillus sp. C56-T3] Length = 610 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 101/191 (52%), Gaps = 11/191 (5%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131 ++L+ ++S + K L++ + +Q++R D L+GL NH F +L + L++ Sbjct: 213 TILITFLSIAFRKLLYLYQEKANQVNR-DHLTGLYNHGFFKETLKEQFSDCKLLKQPLTL 271 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 F D+D FK+ ND GH GD+++AF L V GT V R GGEEFA ++++ Sbjct: 272 AFLDLDDFKKYNDRNGHLQGDRLLAFFGKLLQQAVEGTNFTVARYGGEEFAILMPNTTKE 331 Query: 191 EAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248 +A N LRK + ++ + P ++ S GIAE +I+RADQALY AK Sbjct: 332 DAYAFLNRLRKEVNDTYFEGVEHIPYRCLSFSCGIAEMEKDMHESDELIHRADQALYYAK 391 Query: 249 KSGRNRVVCFS 259 G+N V + Sbjct: 392 AQGKNNVQLYD 402 >gi|307132492|ref|YP_003884508.1| GGDEF family protein [Dickeya dadantii 3937] gi|306530021|gb|ADM99951.1| GGDEF family protein [Dickeya dadantii 3937] Length = 525 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/163 (38%), Positives = 87/163 (53%), Gaps = 5/163 (3%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+S + D LSG+LN S+ S +K+S++ DID+FK IND+FGH VGD+VI Sbjct: 352 RLSSEAHTDPLSGMLNRRGMQESMEEIRSEYKKISVIAIDIDHFKVINDSFGHDVGDEVI 411 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 LS Q+ F V R+GGEEF G+ A ++A LR + N+ + + Sbjct: 412 RKLSQQIRKNFRKTDLVCRIGGEEFLILLPGADIHVATVIAERLRNNVANT-VYMPGYRH 470 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +TIS G+ K + I AD ALY AK GRN+VV Sbjct: 471 HQVTISIGVTTFNPQKSALDIAIKTADNALYKAKNGGRNQVVV 513 >gi|295700649|ref|YP_003608542.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1002] gi|295439862|gb|ADG19031.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1002] Length = 316 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 106/202 (52%), Gaps = 11/202 (5%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 L+ +V + +TIS + ++S + +E + ++ + + D L+G+ N F + L Sbjct: 113 LMRGREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYANRDGLTGIANRRFFEARLRD 170 Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 Y +S++ FD+D+FKQIND FGH VGD V+ ++ ++ V GR GG Sbjct: 171 EFTRWQRYGGDMSMLLFDLDHFKQINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STI 236 EEFA + +A ++A +R++IE + + + G S+ +T S G A P + Sbjct: 231 EEFALLLPCTPLDDAMLVAEKIRRVIEETPVEL-IGTSVPVTASLGGASAREGLPAYDVL 289 Query: 237 IYRADQALYVAKKSGRNRVVCF 258 I AD ALY AK+ GRN V F Sbjct: 290 INEADAALYRAKRQGRNCAVAF 311 >gi|253996162|ref|YP_003048226.1| diguanylate cyclase [Methylotenera mobilis JLW8] gi|253982841|gb|ACT47699.1| diguanylate cyclase [Methylotenera mobilis JLW8] Length = 601 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 10/175 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 ++EL + I Q++ D L+G LN +L +N L + DID+FK++ Sbjct: 419 IEELTAELDYIGQVAHQDYLTGALNRRGMDEALEREFSRADRHNTTLCVAMLDIDHFKKL 478 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRK 201 ND GH GD+ + L+ L V T + R GGEEF + + EA ++ R+ Sbjct: 479 NDTLGHVTGDEALTHLAKVLKEVLRTTDVLARYGGEEFIIILPATPQDEAVKVITRVQRE 538 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +N + + + IT SAG+AER E +I RAD ALY AK SGRNRV+ Sbjct: 539 LTKN--FFMHNNERVLITFSAGVAERVGDESPEVLIPRADAALYKAKHSGRNRVI 591 >gi|228942560|ref|ZP_04105095.1| GGDEF domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975493|ref|ZP_04136048.1| GGDEF domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982126|ref|ZP_04142418.1| GGDEF domain protein [Bacillus thuringiensis Bt407] gi|228777664|gb|EEM25939.1| GGDEF domain protein [Bacillus thuringiensis Bt407] gi|228784287|gb|EEM32311.1| GGDEF domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817153|gb|EEM63243.1| GGDEF domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943212|gb|AEA19108.1| GGDEF family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 351 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 18/206 (8%) Query: 63 YILVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHS 116 YIL ++S+V++ + S+ GYI+ +L+ ELF ++ Q + ID L+GL N Sbjct: 147 YILFNDISVVVLYLISSITTGYITFVSTNYVLQSNELF---QKMKQYATIDALTGLGNVR 203 Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F IS+ N+ L ++ DID+FK +ND +GHP GD+V+ + L P Sbjct: 204 QFDLEMNHHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFP 263 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 R GGEEFA + +R +E+ + G I IT+S G++E + Sbjct: 264 DLAFRKGGEEFALLIPNKGLAYGICMGEQIRTAVESHPFQLLDGTKIKITVSVGVSE--Y 321 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 + I AD ALY +K++GRN+V Sbjct: 322 EGSSEQFIQAADDALYYSKRNGRNKV 347 >gi|241202885|ref|YP_002973981.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856775|gb|ACS54442.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 392 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 7/192 (3%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124 E+LSL + I +G +S ++ + + +R+ ++ D L+GLLN A G+ Sbjct: 187 EDLSLAV-CIAGMTGIGALSLALHQWRLAARHRLDAIT--DPLTGLLNRRALFDQYGTRP 243 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 +++ FDID+FK +ND FGH GD+V+ S +L T RLGGEEF Sbjct: 244 MGTTTAVIVFDIDHFKSVNDRFGHAAGDRVLNVFSGELSAHCRTGDTAARLGGEEFVLVL 303 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243 A + A +R+ E +I+I + T+S G+A R T++ AD+A Sbjct: 304 KEIMPGRAELTAERIRRAFEAREIHIDD-EVLTCTVSVGVAPGRSKSLDFDTMLSAADKA 362 Query: 244 LYVAKKSGRNRV 255 LYVAK++GRNRV Sbjct: 363 LYVAKRAGRNRV 374 >gi|262394290|ref|YP_003286144.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio sp. Ex25] gi|262337884|gb|ACY51679.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio sp. Ex25] Length = 280 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S++SR D L+GL N + + SL + S+V FDID+FK++ND +GHP GD Sbjct: 112 LSEISRKDGLTGLFNRAYWEQSLKEEFAHLKVIDGPCSLVIFDIDHFKKVNDTYGHPTGD 171 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI S L + GR GGEEF +++++A A LRK IE + + Sbjct: 172 EVIRRTSSLLRKTARSSDVCGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQEIVKVED 231 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ TIS G+ E + + E + + AD ALY AK++GRN+ Sbjct: 232 F-LINYTISIGVCEYKPYFETHTQWLKSADAALYRAKENGRNQT 274 >gi|264680486|ref|YP_003280396.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262211002|gb|ACY35100.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 519 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 94/180 (52%), Gaps = 11/180 (6%) Query: 85 ISGSILKELFISYNRISQLSR---IDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDY 138 + ++LK L + I++L D L+GL N A IS+ + S++ DID+ Sbjct: 334 LKKAMLKGLGLLQRNITKLREDVNTDPLTGLGNRRHLEAAISAFQTQALPFSVIAIDIDH 393 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK IND FGH GD+V+ L+ + V R+GGEEF G+ + AA A Sbjct: 394 FKHINDGFGHDTGDEVLRQLARTMREVSRVDDLPCRVGGEEFLLLLPGTGLEAAAHAAER 453 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257 LR+++E +I P HITIS G+A +P I + +AD LY AK+ GRNRV+ Sbjct: 454 LRQLVEKMEIP----PVGHITISLGVAHWPDSDPDIKAVFQQADAMLYAAKRGGRNRVMV 509 >gi|209527055|ref|ZP_03275570.1| response regulator receiver modulated diguanylate cyclase [Arthrospira maxima CS-328] gi|209492483|gb|EDZ92823.1| response regulator receiver modulated diguanylate cyclase [Arthrospira maxima CS-328] Length = 322 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 9/176 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144 EL + + +L+ D L+G+ N ++ YN S++ DID+FK IND Sbjct: 142 ELKQALVELEKLATTDPLTGIANRRHLLTLAEREFQRTHRYNNPFSVLMIDIDHFKLIND 201 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH +GD+ + ++D V GR GGEEF + EA ++A +R+ I Sbjct: 202 NYGHNIGDEALKIMADVTVNALRKVDIFGRFGGEEFVVFLPETQADEALLVAERIREAIA 261 Query: 205 NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + I + +IHIT+S G+ + + ++ AD+ALY AKK GRN+VV ++ Sbjct: 262 TTPIYVDDQ-TIHITVSIGVTIYESSEMSLDGLLMEADKALYDAKKQGRNQVVIYT 316 >gi|269968597|ref|ZP_06182599.1| hypothetical protein VMC_40290 [Vibrio alginolyticus 40B] gi|269826808|gb|EEZ81140.1| hypothetical protein VMC_40290 [Vibrio alginolyticus 40B] Length = 320 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S++SR D L+GL N + + SL + S+V FDID+FK++ND +GHP GD Sbjct: 152 LSEISRKDGLTGLFNRAYWEQSLKDEFAHLKVIDGPCSLVIFDIDHFKKVNDTYGHPTGD 211 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI S L + GR GGEEF +++++A A LRK IE + + Sbjct: 212 EVIRRTSALLRKTARSSDICGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQEIVKVED 271 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ TIS G+ E + + E + + AD ALY AK++GRN+ Sbjct: 272 F-LINYTISIGVCEYKPYFETHTQWLKSADAALYRAKENGRNQT 314 >gi|15807483|ref|NP_296218.1| GGDEF family protein [Deinococcus radiodurans R1] gi|6460320|gb|AAF12040.1|AE002079_5 GGDEF family protein [Deinococcus radiodurans R1] Length = 356 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 12/161 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q +R+D L+G+ +A S L N LS++ DID+FKQ+ND GH GD V Sbjct: 200 QAARLDALTGVAGRAALESELQRALDTARRTNSPLSVILADIDHFKQVNDVHGHGAGDDV 259 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + +L G VGR GGEEF A G + +A LA LR+ + +++I Sbjct: 260 LRAFAKRLRRNVGGAGMVGRWGGEEFMAVLPGVARDDALALAERLRQAVSDTEI-----A 314 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T S G+A + ++ + RAD+ LY AK GRN V Sbjct: 315 GLPVTASFGVAALRPDDDLNQLFSRADERLYDAKNGGRNTV 355 >gi|103487180|ref|YP_616741.1| diguanylate cyclase with PAS/PAC sensor [Sphingopyxis alaskensis RB2256] gi|98977257|gb|ABF53408.1| diguanylate cyclase with PAS/PAC sensor [Sphingopyxis alaskensis RB2256] Length = 594 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 11/162 (6%) Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N ++ ++ L++ FDID+FK+IND GH GD+V Sbjct: 432 RVANTDMLTGLPNRRHTLTFLEEAMAGARAHGAPLAVAIFDIDHFKRINDTHGHATGDQV 491 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I ++ + V +GR+GGEEF +S I+A +RK +EN + G Sbjct: 492 IQRVAQRARSVLRDEDMIGRIGGEEFVCILQRASALSGEIVAERVRKAVEN---GVGQGD 548 Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T+S G+A ++ I +++RADQALY AK+ GRNR+ Sbjct: 549 GLPPTTVSIGLAVYDGEQDIEELLHRADQALYAAKREGRNRM 590 >gi|253998573|ref|YP_003050636.1| diguanylate cyclase [Methylovorus sp. SIP3-4] gi|253985252|gb|ACT50109.1| diguanylate cyclase [Methylovorus sp. SIP3-4] Length = 487 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 9/172 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I ++ D L+ L N AF + Y + L+++ DID+FKQIND GH G Sbjct: 317 QIETMATTDSLTHLPNRKAFEIIIDVIMQERIRYGKDLAVILLDIDHFKQINDRHGHFAG 376 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++ + + FV R GGEEF +E+ A +LA +R+ +E + Sbjct: 377 DQVLTEVALIIRSCLRSVDFVCRWGGEEFLILLKDCNERNARLLAEKIRETLETRPVAHK 436 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + P IH+T S G+A + E I ++ RAD A+Y AK GRN+V+ FS+ +N Sbjct: 437 NVP-IHLTASLGVAMVQNGERIEQVLERADYAMYQAKALGRNQVI-FSNFKN 486 >gi|229106000|ref|ZP_04236621.1| GGDEF domain protein [Bacillus cereus Rock3-28] gi|229118904|ref|ZP_04248251.1| GGDEF domain protein [Bacillus cereus Rock1-3] gi|228664560|gb|EEL20055.1| GGDEF domain protein [Bacillus cereus Rock1-3] gi|228677395|gb|EEL31651.1| GGDEF domain protein [Bacillus cereus Rock3-28] Length = 351 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 105/206 (50%), Gaps = 18/206 (8%) Query: 63 YILVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHS 116 YIL ++S+V++ + S+ GYI+ +L+ ELF + Q + ID L+GL N Sbjct: 147 YILFNDISVVVLYLISSITTGYITFVSANYVLQSNELF---QTMKQYATIDALTGLGNVR 203 Query: 117 AFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F + + N+ L ++ DID+FK +ND +GHP GD+V+ + L + P Sbjct: 204 QFDLEMNHHIGNKHMENDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQIGCILRGISTFP 263 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 V R GGEEFA L +R +E + G I IT+S GI+E + Sbjct: 264 DLVFRKGGEEFALLIPQRGLSYGIHLGEQIRIAVEKHSFQLLDGTKIKITVSVGISE--Y 321 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 K +I AD ALY +K++GRN+V Sbjct: 322 KGSQEQLIQAADDALYYSKRNGRNQV 347 >gi|13470977|ref|NP_102546.1| hypothetical protein mlr0825 [Mesorhizobium loti MAFF303099] gi|14021720|dbj|BAB48332.1| mlr0825 [Mesorhizobium loti MAFF303099] Length = 418 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 14/169 (8%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVF-----FDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+ + N AF + YN I+F DID FK IND +GHPVGDK+I Sbjct: 237 RLADTDPLTQIRNRRAFDKEITRIYNSNKGILFNALILADIDRFKDINDRYGHPVGDKII 296 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-----SQINI 210 +++ MFV R GGEEFA G+SE +A +R +IE SQ + Sbjct: 297 QIIAEIFQTSIRGDMFVARTGGEEFALIIEGASEDATYEIAERIRALIEQTPFTSSQTGM 356 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + G +T+S GI E + +AD+ALY +K SGRNRV S Sbjct: 357 NYGT---VTVSMGICMASEAEGPEDLYTKADRALYRSKVSGRNRVTKHS 402 >gi|158339127|ref|YP_001520304.1| GGDEF family protein [Acaryochloris marina MBIC11017] gi|158309368|gb|ABW30985.1| GGDEF family protein [Acaryochloris marina MBIC11017] Length = 294 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 89/177 (50%), Gaps = 21/177 (11%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQ 141 IL+E F R+++L+ D L+ L+N F++ L Y LSI+ D+DYFK Sbjct: 119 ILQENF----RLTELAYTDSLTELMNRRGFLTQLQQYQSFAARTQRPLSILLLDVDYFKT 174 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND++GH GD+ + +S L GR GGEEF S +Q + +A LR+ Sbjct: 175 FNDSYGHSAGDQALVLISGILKTNLRRSDLAGRYGGEEFVVCLPDSDQQGSFTVAESLRQ 234 Query: 202 IIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRN 253 ++N P ITIS G+A + + +I ADQALY +K+SGRN Sbjct: 235 AVDN-----YGWPIQEITISVGVATAIADQDSTYKTAKELINEADQALYYSKQSGRN 286 >gi|90423253|ref|YP_531623.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gi|90105267|gb|ABD87304.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] Length = 401 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 122/250 (48%), Gaps = 27/250 (10%) Query: 23 SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82 +P +I +S+ ++ + ++ ++ + TP +LV ++++ + + Sbjct: 139 TPRQTVIAWSLM-AVGVGALLLLSERPISLPMATPLERFATMLV-----FVLALGRCMFI 192 Query: 83 GYISGSILKELF-------ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128 G +S ++ + L+ +Y RI +L+ +D L+G N + L Sbjct: 193 GVVSSALRERLYRRGVELKATYKRIEELAELDELTGASNRRCIMRMLDDEILRARRTAMP 252 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV---GRLGGEEFAAAAL 185 L+I D+D+FK+IND +GHP GD+V+ + + +F V GR GGEEF Sbjct: 253 LTIALIDLDWFKRINDLYGHPTGDEVLRTFA---ITIFANIRNVDRFGRYGGEEFLLVLP 309 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 +++ A + LR+I+ + + S + +T+S GIA C+ E ++ RAD ALY Sbjct: 310 ETTQDSAQPTLDRLRRIVADLDWSAFS-QGMTVTMSVGIASWCNNETPEALLARADDALY 368 Query: 246 VAKKSGRNRV 255 AK GRNRV Sbjct: 369 EAKADGRNRV 378 >gi|303246345|ref|ZP_07332625.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] gi|302492408|gb|EFL52280.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] Length = 296 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 10/169 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFG 147 EL + + +LS D L+GL N + LG + +S++ DID+FK+IND FG Sbjct: 130 ELALKNRELMRLSTTDMLTGLANRQRLDALLGQALDDRSGPISLMMLDIDHFKRINDRFG 189 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 HP GD+ +A L++ L +GR GGEEF + +A +LA LR+ + + Sbjct: 190 HPAGDRTLAALAEALRQATPEGCTLGRWGGEEFLILCRETMLADAYLLAEALRERVLELE 249 Query: 208 INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + P + ++ S G+ E E ++ R DQALY AK+ GRNRV Sbjct: 250 L-----PDVGRLSCSFGVVEAAPSETAERLMSRVDQALYAAKELGRNRV 293 >gi|170724885|ref|YP_001758911.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169810232|gb|ACA84816.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 631 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 13/181 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 L+EL + ++++ + D L+G+ N +AF L + ++I+ DID FK I Sbjct: 441 LRELNEANQKLTEQATTDSLTGVKNRAAFDKRLQAEGRLSRRQQTPMAILMLDIDRFKSI 500 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 NDN+GH GD+++ F++ L P V R GGEEFA + + A +A +RK Sbjct: 501 NDNYGHLAGDQILRFIAQTLKEKLKRPADLVSRFGGEEFAIILPNTDQPGAVQVAEQIRK 560 Query: 202 IIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I + I+ + I +TIS G++ + +P + ++ +AD+ALY AK GRNRV+ + Sbjct: 561 TIYDLPISWENI-DIPLTISIGVSSEIMQSETQP-TKLLEQADKALYRAKNDGRNRVMVY 618 Query: 259 S 259 + Sbjct: 619 T 619 >gi|15894105|ref|NP_347454.1| diguanylate cyclase/phosphodiesterase [Clostridium acetobutylicum ATCC 824] gi|15023708|gb|AAK78794.1|AE007597_7 Diguanylate cyclase/phosphodiesterase domain (GGDEF) containing protein [Clostridium acetobutylicum ATCC 824] gi|325508232|gb|ADZ19868.1| Diguanylate cyclase/phosphodiesterase domain (GGDEF) containing protein [Clostridium acetobutylicum EA 2018] Length = 571 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 12/156 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N + IS Y + +I+ DIDYFK IND +GH VGD V++ +S Sbjct: 419 DNLTGMYNRNHIEEILDKEISDYIRYKKLFTILMMDIDYFKSINDKYGHLVGDNVLSVVS 478 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + ++ FVGR GGEEF + ++EA I+A +R IE N+ I +T Sbjct: 479 NAIIRNLRKEDFVGRYGGEEFIVVFPNTDKKEAFIIAERIRTDIE----NLLFENGIRVT 534 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS GI E I+ AD+ LY AK+SGRNR+ Sbjct: 535 ISGGIYENSSFSK-KVCIHNADRLLYYAKESGRNRI 569 >gi|213027058|ref|ZP_03341505.1| hypothetical protein Salmonelentericaenterica_33399 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 171 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 5/163 (3%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+ ++ D L+G N + S LG E +++ D+DYFK NDN+GH GD + Sbjct: 8 RLDVMAHQDALTGTANRRSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACL 67 Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSG 213 A ++ + TP V R GGEEF SS EAA++A ++ + E + +++S Sbjct: 68 AKVACVVKRSIRTPADLVARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASA 127 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S +T+S GI + ++ II RAD+ALY AK+ GRNR V Sbjct: 128 VSETVTVSMGITLSTAGDTVTGIIARADEALYRAKQQGRNRWV 170 >gi|209808967|ref|YP_002264505.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] gi|208010529|emb|CAQ80897.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] Length = 482 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 20/215 (9%) Query: 52 YIGLTPFYGLEYILVENLSLVIISITISLLLGYI--SGSILKELFISYNRISQLSRIDCL 109 Y TP Y +++ I+S+ + LL +I + + L S+L+ D L Sbjct: 276 YYWFTPLY---------ITIFIVSMLMILLSFFIFKNAYYFQTLIYQAEHYSKLALYDEL 326 Query: 110 SGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 +G+ N F + S+ E+ S+V FDID+FK IND +GH GD+V+ S Sbjct: 327 TGVCNRRCFEKVMSSFLEEYKQKGVVFSLVIFDIDFFKDINDTYGHDRGDEVLRVFSKTC 386 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 V RLGG+EF + QEAA++ +L I + S G + I+ S Sbjct: 387 SSVMSPEDIFARLGGDEFVMIMANKTSQEAALIMTELLHQIRRLSVMTSKG-ELKISSSI 445 Query: 223 GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 GI + + + S ++ RAD+ALY K+SGRN VV Sbjct: 446 GITQMKTKNDDFSVLLERADKALYQVKRSGRNGVV 480 >gi|182418449|ref|ZP_02949743.1| ggdef domain protein [Clostridium butyricum 5521] gi|237666543|ref|ZP_04526528.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377831|gb|EDT75375.1| ggdef domain protein [Clostridium butyricum 5521] gi|237657742|gb|EEP55297.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1758 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 11/164 (6%) Query: 104 SRIDCLSGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S +D L+ + N F SL S+N + +++ FDID FK +ND +GH VGD+V+ Sbjct: 1420 STLDKLTSVYNRKYFEESLVYLLEKSSFNNSEFAVIMFDIDDFKGVNDKYGHQVGDEVLI 1479 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ ++ G +GR GGEEF + +A +A +R +E+++I G Sbjct: 1480 KLTKEVKRSIGRSDIIGRYGGEEFVVLLPSVDKLKAINMAEKIRNNVEDARI---LGDKR 1536 Query: 217 HITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259 +TIS GIA H+ S I+ RADQALY+AK G+NR V + Sbjct: 1537 KVTISIGIAMSGHERINSEEIVNRADQALYMAKHEGKNRYVLWD 1580 >gi|90420315|ref|ZP_01228223.1| putative diguanylate cyclase (GGDEF domain) [Aurantimonas manganoxydans SI85-9A1] gi|90335649|gb|EAS49399.1| putative diguanylate cyclase (GGDEF domain) [Aurantimonas manganoxydans SI85-9A1] Length = 395 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 102/201 (50%), Gaps = 13/201 (6%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 G + LV ++++I ++ L++ + G + L +LS D L+G+ N AF Sbjct: 181 GFLFTLVMTQAILMIGVSTYLVIAMVRGRHEQSL-------RRLSETDFLTGIDNRRAFT 233 Query: 120 SSLGSY-NE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 + + N+ ++++ FD+D FK+IND+ GH GD+VI D R Sbjct: 234 TKATALLNDADAGDVALLLFDLDRFKKINDDHGHGCGDEVIKLFVDSTADHLRPTDVFAR 293 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 LGGEEFAA + E A++A + + N Q G SI T+SAG+A ++ Sbjct: 294 LGGEEFAALVRRRDKHEPAVIAKAIVRGFAN-QARTVGGRSIAATVSAGVATNEANRDLN 352 Query: 235 TIIYRADQALYVAKKSGRNRV 255 ++ ADQALY AK GR+RV Sbjct: 353 GLLTAADQALYRAKSMGRDRV 373 >gi|299532954|ref|ZP_07046341.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298719178|gb|EFI60148.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 519 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 94/180 (52%), Gaps = 11/180 (6%) Query: 85 ISGSILKELFISYNRISQLSR---IDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDY 138 + ++LK L + I++L D L+GL N A IS+ + S++ DID+ Sbjct: 334 LKKAMLKGLGLLQRNITKLREDVNTDPLTGLGNRRHLEAAISAFQTQALPFSVIAIDIDH 393 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK IND FGH GD+V+ L+ + V R+GGEEF G+ + AA A Sbjct: 394 FKHINDGFGHDTGDEVLRQLARTMREVSRVDDLPCRVGGEEFLLLLPGTGLEAAAHAAER 453 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257 LR+++E +I P HITIS G+A +P I + +AD LY AK+ GRNRV+ Sbjct: 454 LRQLVEKMEIP----PVGHITISLGVAHWPDSDPDIKAVFQQADAMLYAAKRGGRNRVMV 509 >gi|218463098|ref|ZP_03503189.1| hypothetical protein RetlK5_28330 [Rhizobium etli Kim 5] Length = 392 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 7/192 (3%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124 E+LSL + I +G +S ++ + + +R+ ++ D L+GLLN A G+ Sbjct: 187 EDLSLAV-CIAGMTGIGALSLALHQWRLAARHRLEAIT--DPLTGLLNRRAVFDQYGTRP 243 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 +++ FDID+FK +ND +GH GD+VI +D+L RLGGEEFA Sbjct: 244 MGSTAAVIVFDIDHFKSVNDRYGHAAGDRVITVFADELTAHCRPGDTAARLGGEEFALVL 303 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243 A + A +R+ E +I I G + T+S G+A R ++ AD+A Sbjct: 304 KEIMPGRAELTAERIRRAFEAREIPI-DGDVLKCTVSVGVAPGRSTPLDFDAMLSAADKA 362 Query: 244 LYVAKKSGRNRV 255 LY AK+ GRNRV Sbjct: 363 LYAAKRGGRNRV 374 >gi|222148263|ref|YP_002549220.1| GGDEF family protein [Agrobacterium vitis S4] gi|221735251|gb|ACM36214.1| GGDEF family protein [Agrobacterium vitis S4] Length = 420 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 + QLSR D L+G LN I ++G + + L+++ FD+DYFK IND FGH GD Sbjct: 212 LKQLSRTDPLTGALNRRGLIETVGELKHTVARDRLLALLVFDLDYFKHINDTFGHQAGDT 271 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V++ + G R GGEEF A + ++AA +A +R +I ++ I G Sbjct: 272 VLSSFAQMTGGALGNDAIFARSGGEEFCAVMAVADLRQAAGVAERIRYMIASTPITTEQG 331 Query: 214 PSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +T S G+ A T + +AD LY AK GRNR Sbjct: 332 -VVRLTTSIGLSAATVEAFDFDTAMRQADHGLYTAKADGRNRTA 374 >gi|224373181|ref|YP_002607553.1| diguanylate cyclase [Nautilia profundicola AmH] gi|223589831|gb|ACM93567.1| diguanylate cyclase [Nautilia profundicola AmH] Length = 470 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 113/207 (54%), Gaps = 10/207 (4%) Query: 51 FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110 F + + P +E + N S + I + L+ ++ G +L +Y+++ + S+ID L+ Sbjct: 274 FMLSVIPLDKIETLNEINNSYNTLIIIVFLIYVFLLGVML--FLYNYSKMKRNSQIDYLT 331 Query: 111 GLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 +LN S +S + + ++ S++ D+D+FKQIND +GH VGD+++ D + Sbjct: 332 DILNRSGCLSKIKALDD-YSVLVLDVDHFKQINDTYGHNVGDEILKRFVDVVRNTIRKND 390 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 R GGEEF + ++ A ++A +RK +EN+ + ++ IT+S G+A++ + Sbjct: 391 IFCRWGGEEFVIILPDTDKETAKLVAEKIRKTVENTDFD-----NLKITVSIGVAQK--E 443 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257 + + AD LY AK+ GRNRVV Sbjct: 444 KNFNETFKIADMKLYEAKELGRNRVVA 470 >gi|87122912|ref|ZP_01078778.1| sensory transduction/ GGDEF family protein [Marinomonas sp. MED121] gi|86161812|gb|EAQ63111.1| sensory transduction/ GGDEF family protein [Marinomonas sp. MED121] Length = 416 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 9/167 (5%) Query: 99 RISQLSRIDCLSGLLNH------SAFISSLG-SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++ L+ D L+GL N SA I L S L+ + D+D FK++ND FGH +G Sbjct: 248 KLTLLAMTDSLTGLFNRRFLMEKSAQIFDLQQSLKLPLACILIDLDKFKRVNDKFGHNIG 307 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ S++ + P +GR GGEEF ++ ++A LAN LR++ + I Sbjct: 308 DEILKAFSNRCQRMIQEPHIIGRYGGEEFLVVMPNTNPEDAVTLANTLRQMCDEEAIETG 367 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +G + +T+SAGI+ ++ RAD+ LY AK GRNRVV Sbjct: 368 AG-DLKVTMSAGISTLNTDDTHFDQLVDRADKRLYEAKALGRNRVVS 413 >gi|300716401|ref|YP_003741204.1| GGDEF domain protein [Erwinia billingiae Eb661] gi|299062237|emb|CAX59354.1| GGDEF domain protein [Erwinia billingiae Eb661] Length = 389 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 30/225 (13%) Query: 56 TPFYGL-------EYILVENLSLVIISITISLL--------LGYISGSILKELFISYNRI 100 +PF+G Y+++E++ +++I +T ++L + Y + S+L L +NR Sbjct: 174 SPFHGAIGGSTFSVYVILESI-MMVIGLTFTMLAMVNERTQIKYKNASLLDPLTGVWNRR 232 Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 + + + L+ + +A + L+I+ FD+D+FK IND FGH GD V+ Sbjct: 233 ALFEQGEALARRCDKTA---------QPLTIMLFDLDHFKSINDRFGHNQGDLVLIDFCR 283 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 Q+ RLGGEEF AA L +SE++A +A +R+ +E+S G + ++I Sbjct: 284 QVQQSLPAQSHFARLGGEEF-AAILVASERDALRIAEKIRQTVEHSH---PEGVNYTVSI 339 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 A+ + + I T++ AD+ALY AK GRNRV F E N Sbjct: 340 GVATAQGAYHQ-IPTLMVAADEALYQAKALGRNRVTRFVATEANA 383 >gi|91223751|ref|ZP_01259015.1| hypothetical protein V12G01_18442 [Vibrio alginolyticus 12G01] gi|91191243|gb|EAS77508.1| hypothetical protein V12G01_18442 [Vibrio alginolyticus 12G01] Length = 320 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S++SR D L+GL N + + SL + S+V FDID+FK++ND +GHP GD Sbjct: 152 LSEISRKDGLTGLFNRAYWEQSLKDEFAHLKVIDGPCSLVIFDIDHFKKVNDTYGHPTGD 211 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI S L + GR GGEEF +++++A A LRK IE + + Sbjct: 212 EVIRRTSALLRKTARSSDICGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQEIVKVED 271 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ TIS G+ E + + E + + AD ALY AK++GRN+ Sbjct: 272 F-LINYTISIGVCEYKPYFETHTQWLKSADAALYRAKENGRNQT 314 >gi|86748818|ref|YP_485314.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] gi|86571846|gb|ABD06403.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] Length = 753 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 105/219 (47%), Gaps = 37/219 (16%) Query: 69 LSLVIISITISLLLGYISGSILKELFISY---------NRISQLSR-------------- 105 L+L + IT S LLG I L + Y +R+ QL R Sbjct: 506 LTLPVAGITASRLLGIIITLQLALTALFYFFGRERGVRDRVQQLLRSELQERAAALARQA 565 Query: 106 -IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+GL N F ++ + + LS+V FD+D+FK++ND +GHP GD+V+ Sbjct: 566 TTDPLTGLHNRLRFNEGLAQELARVRRTGQPLSLVMFDVDHFKEVNDRYGHPTGDQVLIR 625 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSI 216 LS + R GGEEFA + + A +A +LR+++ + + I S Sbjct: 626 LSQTAAAQLRQTDLLARWGGEEFAILLVDADLHAAVEVAENLRRLVARTPFDQIGS---- 681 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G+AE E +++ RAD ALY AK +GRNRV Sbjct: 682 -VTASFGVAECRPDESADSLLERADAALYRAKSNGRNRV 719 >gi|192362321|ref|YP_001981676.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107] gi|190688486|gb|ACE86164.1| GGDEF domain protein [Cellvibrio japonicus Ueda107] Length = 325 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 22/242 (9%) Query: 27 FMIYFSIFFSIFIATVI--FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84 F ++ +IF ++F+ + IAN+ L L P +V+ +++ I S+ S L Y Sbjct: 93 FWVFPAIFANVFLLRALNALIANL-LAISALVPLALRLPNMVDAMAM-IASLLFSTSLAY 150 Query: 85 I------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDY 138 + L E S + +++L+ L+ L + +++ FD+DY Sbjct: 151 VFALQTERQRALLEKSASQDPLTELANRRALNQTLKQC--LDDFQRNQTPATLIIFDLDY 208 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FKQIND FGH +GD+++ L+ + T R GGEEF A + +EA + A Sbjct: 209 FKQINDKFGHSIGDEILQNLAQLITRRIRTTDRAFRFGGEEFIVLARNTQLEEARLFAEQ 268 Query: 199 LRKIIENSQINIS---SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 LR +NIS + P IT S G AE E + RAD+A+Y AK+ GRNRV Sbjct: 269 LR-------VNISLELNAPEGEITASFGCAELKPNETLDGWFNRADKAVYQAKQLGRNRV 321 Query: 256 VC 257 VC Sbjct: 322 VC 323 >gi|300311237|ref|YP_003775329.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gi|300074022|gb|ADJ63421.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 10/166 (6%) Query: 100 ISQL---SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 I+QL S D L+G+LN AF ++ Y +L++V FDID+FKQIND++GH Sbjct: 406 ITQLQTSSNTDFLTGVLNRRAFFTHGQQQMTVAKRYGRELAVVLFDIDHFKQINDSYGHQ 465 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD ++ ++ + + + R GGEEF SS +AA + LR + + Sbjct: 466 AGDAILRGVAQSVSQLLRKVDVLARYGGEEFIILLPESSLLQAAAASEKLRAALAAGEFE 525 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I G I +T S G+A + +I +AD ALY AKK GRNRV Sbjct: 526 IDGGRRIRVTASFGVAAENGGPGLEHLIKQADIALYRAKKLGRNRV 571 >gi|119476786|ref|ZP_01617096.1| response regulator protein with GGDEF domain [marine gamma proteobacterium HTCC2143] gi|119450042|gb|EAW31278.1| response regulator protein with GGDEF domain [marine gamma proteobacterium HTCC2143] Length = 201 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 8/174 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 KE+ + + + L+RID L+ + N AF +S LS++ FD+D FK+IN Sbjct: 24 KEIALREHELEILTRIDPLTNISNRRAFYEVAGKLLSGFKRNKLPLSLLLFDVDNFKKIN 83 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD V+ L++++ T R GGEEF + E +++ +R ++ Sbjct: 84 DVYGHRYGDVVLKTLANEVRHSIRTTDCFARFGGEEFIIIFPQINADELLLISEKIRHVL 143 Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +NS++ G I+ T+S G R + +I RAD+A+Y AKK GRNRV+ Sbjct: 144 QNSEVKTDKGDLINYTVSIGATTFRETDGNLDMVIQRADEAMYEAKKGGRNRVI 197 >gi|317152067|ref|YP_004120115.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316942318|gb|ADU61369.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 1051 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 9/166 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+ D L+GL N F+ Y L+++ DID+FK++ND GH VG Sbjct: 885 RLHELATTDSLTGLFNRRRFMELAEREFMRTKRYQGALTMLMMDIDHFKRVNDTHGHGVG 944 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ L+ +GRLGGEEF + A +A LR+ IE + + Sbjct: 945 DEVLRELARISRTALRELDILGRLGGEEFGVLLPETDAGPAMEVAQRLRRAIEKASMATD 1004 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +G ++ IT+S G A + E + T++ RAD ALY AK+SGRN+VV Sbjct: 1005 AG-TLRITVSIGAATSNNDAETVETLLKRADVALYEAKQSGRNKVV 1049 >gi|307299825|ref|ZP_07579613.1| diguanylate cyclase [Thermotogales bacterium mesG1.Ag.4.2] gi|306914526|gb|EFN44924.1| diguanylate cyclase [Thermotogales bacterium mesG1.Ag.4.2] Length = 311 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 10/173 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 KEL + I +L D L+GL N F I SL S + LSI+ DID FK++N Sbjct: 141 KELQAANKEIERLMNCDPLTGLSNRREFMNRLDKEIESLCSTCKPLSIIMADIDDFKRVN 200 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GHP GD+V+ +D L + R GGEEF ++ +EA +A ++RK Sbjct: 201 DTRGHPEGDRVLQLFADVLNEIISPRRTTVRYGGEEFIVMLPETTSEEATEIAEEVRK-- 258 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 N + + +T S G+A + S+I+ R D ALY AK G+NRVV Sbjct: 259 -NFERETEKKLGLTVTASFGVATFKPSDTKSSILKRVDDALYSAKSGGKNRVV 310 >gi|288942659|ref|YP_003444899.1| diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288898031|gb|ADC63867.1| diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 342 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 10/179 (5%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFK 140 +G+ ++ L + +R+D L+ + N F +L G +E ++ D+D+FK Sbjct: 164 AGAQVERLTRELEESERRARLDSLTKIPNRRGFDEALAQSLSGGDDEPTCLMLMDLDHFK 223 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDL 199 ++ND +GHP+GD+V+ + L + +FV R GGEEF A + E EAA +LA + Sbjct: 224 RLNDTYGHPMGDRVLEIVGTVLAKLQSDHVFVARYGGEEF--AVIVHDELEAAQMLAEQI 281 Query: 200 RKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 R+ + QI S IT+S G+ E +++I RAD LY AK+ GR+RVV Sbjct: 282 RRQVAALQIRRKSTQDTIGAITVSIGLTRFRPGETAASLIERADTGLYRAKEGGRDRVV 340 >gi|27379458|ref|NP_770987.1| hypothetical protein bll4347 [Bradyrhizobium japonicum USDA 110] gi|27352610|dbj|BAC49612.1| bll4347 [Bradyrhizobium japonicum USDA 110] Length = 355 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 19/189 (10%) Query: 93 LFISYNRISQLSR----------IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135 L +S N IS L + D L+GL N F +G + E LS++ FD Sbjct: 157 LTLSRNEISNLQQSLEAIRAESLTDPLTGLGNRKYFDRMIGMAVQSALASGEPLSLLLFD 216 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK ND++GH GD+V+ + + R GGEEFA ++ ++A + Sbjct: 217 IDHFKSFNDSYGHLTGDQVLRLVGLSMKQTIKGQDITARYGGEEFAVLLPNTALRQALTV 276 Query: 196 ANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A+ +R+ + ++ S I +TIS G++ + +I RAD LY AK++GRN Sbjct: 277 ADHIRRAVMAKELKKKSTGEILGRVTISVGVSMLKPGDDTDALIERADACLYAAKRNGRN 336 Query: 254 RVVCFSDIE 262 RV+C +D E Sbjct: 337 RVICEADPE 345 >gi|299533301|ref|ZP_07046685.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44] gi|298718831|gb|EFI59804.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44] Length = 860 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 15/180 (8%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 +S RI QL+ D L+GL N S I+S +E+L+++F D+D FKQ+ND+ G Sbjct: 413 LSRARIRQLAFYDGLTGLPNRSLLQAKADQAIASAAGNDEQLAVLFIDLDRFKQVNDSLG 472 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--N 205 HPVGD+++ ++ +L V + GRL G+EF A + +A +AN + ++ E Sbjct: 473 HPVGDELLRNVATRLQRVLRSSDIAGRLSGDEFVAVL---PQCDAEHVANTIERLQELLA 529 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 +NI+ S+ I+ S GIA + T+++RAD A+Y AK GR R CF E N Sbjct: 530 EPLNIAD-TSLSISASVGIAMFPMDGRDMETLVHRADMAMYQAKSKGRGR-FCFFSSEMN 587 >gi|264679607|ref|YP_003279514.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni CNB-2] gi|262210120|gb|ACY34218.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni CNB-2] Length = 868 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 15/180 (8%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 +S RI QL+ D L+GL N S I+S +E+L+++F D+D FKQ+ND+ G Sbjct: 421 LSRARIRQLAFYDGLTGLPNRSLLQAKADQAIASAAGNDEQLAVLFIDLDRFKQVNDSLG 480 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--N 205 HPVGD+++ ++ +L V + GRL G+EF A + +A +AN + ++ E Sbjct: 481 HPVGDELLRNVATRLQRVLRSSDIAGRLSGDEFVAVL---PQCDAEHVANTIERLQELLA 537 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 +NI+ S+ I+ S GIA + T+++RAD A+Y AK GR R CF E N Sbjct: 538 EPLNIAD-TSLSISASVGIAMFPMDGRDMETLVHRADMAMYQAKSKGRGR-FCFFSSEMN 595 >gi|187477737|ref|YP_785761.1| signaling protein [Bordetella avium 197N] gi|115422323|emb|CAJ48847.1| putative signaling protein [Bordetella avium 197N] Length = 521 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 8/179 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144 ++ +++ +N++ Q S D L+GLLN + S Y +S++ DID+FK IND Sbjct: 346 TVSRKIGTKFNQLRQDSLTDALTGLLNRRGLDEILQSEPRYGRAMSVLAVDIDHFKAIND 405 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD VI ++ L +GRLGGEEF + +A A +R +E Sbjct: 406 ELGHAAGDAVIRGIAALLRSRARASDILGRLGGEEFVVLLPNTDRAQALQAAERIRAAVE 465 Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 Q + P T+S G+A H+ ++ ++ RAD+ALY AK+ GRNRV +++ Sbjct: 466 TFQ----AVPGGACTVSIGVAVYPHEGASLTAVLERADEALYEAKRGGRNRVCDAAEMR 520 >gi|156974523|ref|YP_001445430.1| hypothetical protein VIBHAR_02241 [Vibrio harveyi ATCC BAA-1116] gi|156526117|gb|ABU71203.1| hypothetical protein VIBHAR_02241 [Vibrio harveyi ATCC BAA-1116] Length = 320 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 91/169 (53%), Gaps = 9/169 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152 +S++SR D L+GL N + + SL +L S+V FDID+FK++ND +GH GD Sbjct: 152 LSEISRKDGLTGLFNRAYWEQSLKEEFAQLKVIEGASSLVIFDIDHFKKVNDTYGHHTGD 211 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI S L + GR GGEEF +++++A A LRK IE + + Sbjct: 212 EVIRRTSSLLRKTARSSDICGRFGGEEFTVLLPHTNQEQANYFAERLRKRIEQEIVKVEE 271 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I+ TIS G+ E + + E + + AD ALY AK+SGRN+ D Sbjct: 272 FL-INYTISIGVCEYKSNFESHTQWLKSADAALYRAKESGRNQTCNHED 319 >gi|23014258|ref|ZP_00054084.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 445 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 16/201 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQ-LSRI---DCLSGLLNHSAFISSL 122 E S+ + LL +++ LKE R+ + L+R+ D L+G+ N F+ Sbjct: 245 EKCSIAPVRSPTGLLTHFVA---LKEDVTETKRLQEELTRLASQDSLTGIANRRHFLERA 301 Query: 123 -------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 G L+++ D+D+FK+IND +GH GD + L+D GRL Sbjct: 302 HTEIIRAGRAKTPLAVLMLDVDHFKKINDEYGHAAGDAALKALADTCRSTLRETDLFGRL 361 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPIS 234 GGEEF G A A LR I ++I I G +I IT S G++ + ++ I Sbjct: 362 GGEEFGILFPGDDLNAATEAAERLRLAIAATKITI-GGATIAITASLGLSLLQDGEKSID 420 Query: 235 TIIYRADQALYVAKKSGRNRV 255 + RADQALYVAK++GRNR+ Sbjct: 421 AALSRADQALYVAKQAGRNRL 441 >gi|148251790|ref|YP_001236375.1| GGDEF domain-containing protein [Bradyrhizobium sp. BTAi1] gi|146403963|gb|ABQ32469.1| putative diguanylate cyclase (GGDEF)domain protein [Bradyrhizobium sp. BTAi1] Length = 328 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 11/172 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 S N+ Q +R D L+GL N A I S+ +E LSI+ D+D+FK+ NDN+G Sbjct: 147 SLNKSEQRARTDTLTGLPNRRALEEFFRHAQIESM-ERDEPLSILLIDVDHFKKFNDNYG 205 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+V+ ++ L R GGEE A + + +A +R+ I + Q Sbjct: 206 HGVGDQVLRLVAKALRERVRDQDLPARYGGEELIAVLPQTDLEGCHAIAERIRRTIADCQ 265 Query: 208 INISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S + IT+S G+ + E ++ +I R D+ALY+AKK GRNRV+ Sbjct: 266 FTRRSTGEVLPQITVSIGVGQFQFGESMADLIDRCDRALYLAKKLGRNRVIT 317 >gi|146337355|ref|YP_001202403.1| GGDEF domain-containing protein [Bradyrhizobium sp. ORS278] gi|146190161|emb|CAL74153.1| putative diguanylate cyclase (GGDEF)domain [Bradyrhizobium sp. ORS278] Length = 328 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 11/172 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 S N+ Q +R D L+GL N A I ++ +E LSI+ D+D+FK+ NDN+G Sbjct: 147 SLNKSEQRARTDTLTGLPNRRALEEFFRHAQIEAM-ERDEPLSILLIDVDHFKKFNDNYG 205 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+V+ ++ L R GGEE A + + +A +R+ I + Q Sbjct: 206 HGVGDQVLRLVAKALRERVREKDLPARYGGEELIAVLPETDLEGCTGMAERIRRTIADCQ 265 Query: 208 INISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S + IT+S G+ + E ++ +I R D+ALY+AKK GRNRVV Sbjct: 266 FTRRSTGEVLPQITVSIGVGQFQFGESMADLIDRCDRALYLAKKLGRNRVVT 317 >gi|78484724|ref|YP_390649.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78363010|gb|ABB40975.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Thiomicrospira crunogena XCL-2] Length = 540 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 10/170 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N++ + D L+GLLN AF S +++ +S++ DID+FK+IND+FGH Sbjct: 366 NQLRDEATKDYLTGLLNRKAFFEQAEQIWLSAKEHHQPISLLMIDIDHFKRINDSFGHDA 425 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ +++ V R GGEEF EQ A+ L+K+I+ ++ Sbjct: 426 GDRVLIEVANVFSQNCREEDLVCRYGGEEFIILLENKDEQPTLEFASRLKKVIQEMSVS- 484 Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258 G I +IS G+A E I T I ADQALY AK +GRNRV F Sbjct: 485 EQGEVIRFSISVGVATGSALELNSIETFISHADQALYQAKANGRNRVEVF 534 >gi|308067202|ref|YP_003868807.1| HD-GYP domain protein [Paenibacillus polymyxa E681] gi|305856481|gb|ADM68269.1| HD-GYP domain protein [Paenibacillus polymyxa E681] Length = 616 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 96/175 (54%), Gaps = 10/175 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143 K++F Y I + + +D +GL NHS F ++L S N LS+ DID FK+ N Sbjct: 230 KQMFTLYREIEEKANMDRRTGLYNHSYFENTLEAELNISRSENTPLSLALIDIDDFKKYN 289 Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D+FGH GD+++ FL + L GT + V R GGEEF G + ++A N +RK Sbjct: 290 DHFGHLKGDQLLGFLGEFLKKETSGTHITVSRYGGEEFTLLMPGHTAEQAYETVNAIRKR 349 Query: 203 IENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +S+ + P ++ SAGIA+ R S ++ AD+ALY AKK G+N V Sbjct: 350 LNDSRYEGVEIFPHGCLSFSAGIAQSRIDIYDKSQLVDLADKALYYAKKQGKNIV 404 >gi|239904985|ref|YP_002951724.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239794849|dbj|BAH73838.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 570 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 +EL ++ LS D L+GL N L Y S++ D+D FK +N Sbjct: 390 RELDAKNQALAVLSLTDRLTGLCNRRRLDQVLSGEWRRAHRYGTPFSVIMIDLDNFKDVN 449 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH VGD V+ ++D L+ V VGR GGEEF ++ ++A +LA LR+ + Sbjct: 450 DTFGHAVGDAVLLRVADILLAVVRETDVVGRFGGEEFLLVCPETTVEDARVLAEALRREL 509 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +++ I IT S G+A+ + ++ RAD+ALY AK+SGRN+V+ Sbjct: 510 QDTDFPIVG----RITASFGLADYEADPGPAALVARADKALYRAKQSGRNQVI 558 >gi|157963935|ref|YP_001503969.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157848935|gb|ABV89434.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 485 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 90/165 (54%), Gaps = 8/165 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF----ISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +++ D L+G N AF SL + + +S++ DID+FK++ND GH +G Sbjct: 319 KLERMASTDKLTGAANRQAFEDYFAKSLANSILESSPMSVLLLDIDHFKRVNDCHGHNIG 378 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D VI LS L + R GGEEF G S + + +A +RK++E + I+ Sbjct: 379 DLVIQTLSHLLKGQLRNDDLLCRWGGEEFLILLPGCSLSQGSDIAEKIRKLVEARLVTIN 438 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I+ITIS G+AE E +I R D ALY AK+ GRNRVV Sbjct: 439 -GCEINITISCGVAECRTSEKAEELINRVDIALYQAKEQGRNRVV 482 >gi|313680298|ref|YP_004058037.1| diguanylate cyclase [Oceanithermus profundus DSM 14977] gi|313153013|gb|ADR36864.1| diguanylate cyclase [Oceanithermus profundus DSM 14977] Length = 346 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 84/163 (51%), Gaps = 8/163 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ +L D L+G L+ F+ +L S++ FD+D FKQIND +GHP GD+V Sbjct: 186 KQMQKLVDTDALTGCLSRRRFLEETEALLESGRPGSLILFDLDNFKQINDTYGHPTGDRV 245 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + + +GRLGGEEFA G +EA LA LR+ +E GP Sbjct: 246 LMRSVKRTLHNLREEDRLGRLGGEEFAVLLPGVGLEEALRLAERLRRALEAPS---DEGP 302 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T S G+ E S ++ RAD+ALY AK +G+NRV Sbjct: 303 P--ATASFGVVETGRLRTTSELLARADRALYRAKHAGKNRVAA 343 >gi|218782156|ref|YP_002433474.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218763540|gb|ACL06006.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 417 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 15/200 (7%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126 IS+++ ++ + + + L +Y I +S D L+ L N F + L Y Sbjct: 217 ISLSLLSMIWILVSRLARRLTKAYETIEVMSITDELTRLHNRRHFETRLAEEISRSLRYG 276 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 +S++ DID+FK++NDN+GH GD V+ + L R GGEEF Sbjct: 277 SPMSLMILDIDHFKRVNDNYGHQAGDWVLTQFATLLKDNVRKADVPARWGGEEFVVILTE 336 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-------ERCHKEPISTIIYR 239 S+ +A + A +R+ +E+++ NI G SI +T+S G+A + E ++ Sbjct: 337 STISQARMAAEKVRRNVESAEFNIPDGRSIPVTVSVGVASLDMISGDEMGSEA-DVLVKT 395 Query: 240 ADQALYVAKKSGRNRVVCFS 259 AD ALY AK+ GRNR V S Sbjct: 396 ADDALYRAKQEGRNRTVAVS 415 >gi|159184597|ref|NP_354083.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159139899|gb|AAK86868.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 430 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 11/178 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 E R+ +L+ D L+GL N +F + + +E ++ DID+FK+IND Sbjct: 243 ETLKQLKRLRELAERDHLTGLPNRRSFFERTRALMDVINDNDESGAVAILDIDHFKKIND 302 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH GD+ + L++ L + + RLGGEEFA G + A +LR+ + Sbjct: 303 TLGHDAGDRALKKLAELLQGMCDEQRHIPARLGGEEFAVFLRGLDARAAYAFCEELREQV 362 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 E + +S G S+ +TIS G+ E EP + ADQ LY+AK +GRNRV +SDI Sbjct: 363 EKNGRQLS-GSSLALTISLGVVEIEKGEPFDNQLNAADQLLYLAKANGRNRV--YSDI 417 >gi|24215629|ref|NP_713110.1| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] gi|45657012|ref|YP_001098.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196786|gb|AAN50128.1| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] gi|45600249|gb|AAS69735.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 308 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 105/214 (49%), Gaps = 33/214 (15%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAF-- 118 S +S L Y++G + +L S +IS L+ D L+ L N AF Sbjct: 100 SPDLSAGLIYVTGRDISDLIESNRKISLLAAELKDANDKLFEQACTDPLTKLKNRRAFNE 159 Query: 119 -ISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 ++SL ++K LS++ D+D+FK ND FGHP GDKV+A L+ L Sbjct: 160 ELNSLIQLSQKQLSPLSLLMIDVDFFKDYNDKFGHPAGDKVLAILASLLAKTLRKDDVTA 219 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF A +SE+EA +A L K+IE S+ S +TIS GI P Sbjct: 220 RYGGEEFIVALPNTSEKEAIEIAERLVKVIEESRWEKRS-----VTISVGITT-SQINPS 273 Query: 234 ST------IIYRADQALYVAKKSGRNRVVCFSDI 261 + II AD+ALY +K +GRNRV S I Sbjct: 274 NNADHSIDIIEEADRALYHSKVNGRNRVTHSSQI 307 >gi|114564665|ref|YP_752179.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114335958|gb|ABI73340.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 318 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/266 (30%), Positives = 130/266 (48%), Gaps = 29/266 (10%) Query: 7 DFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILV 66 D + WL H+ +ES F++ F S +F + P G + Sbjct: 63 DLPATWLKHK--MES----VFLLKNRTFISWEQRPYVFQ------FKNYRPVTGRADFMY 110 Query: 67 ENLSLV-IISIT-----ISLLLGYISGSILKELFI--SYNRISQLSRIDCLSGLLNHSAF 118 +N++L+ + S+T IS+++ ++ + +L + + ++ QLS+ D L+ L N + Sbjct: 111 QNITLLPLASLTGQITHISIIVYDVTDIAVNKLQLKAANEQLEQLSQTDGLTLLHNRRHW 170 Query: 119 ISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S + Y + S+V DID FK+IND +GHP GDKVI ++ L Sbjct: 171 QSCMEKEFDRYSRYGDAASLVMIDIDNFKRINDEYGHPAGDKVIQHIAYLLKQALRDTDC 230 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHK 230 GR GGEEF ++ +EA LRK IE S++ + I +T+S GI + Sbjct: 231 AGRYGGEEFGVVLSKTTAEEALNFTERLRKRIEASEVAFEN-RLIKVTVSLGINDLDSEI 289 Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256 + ST + AD+ALYVAK+ GRN+ V Sbjct: 290 DNSSTWLSGADKALYVAKQEGRNKSV 315 >gi|218887723|ref|YP_002437044.1| diguanylate cyclase with extracellular sensor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758677|gb|ACL09576.1| diguanylate cyclase with extracellular sensor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 474 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 23/193 (11%) Query: 81 LLGYISG--SILKELFISYNR--------ISQLSRIDCLSGLLNHSAF-------ISSLG 123 L+ ++G ++L + + YNR + +L+R D L+ L N S + Sbjct: 284 LVARVAGFFALLVGVVLWYNRRLKRMNAVLERLARTDPLTDLPNRSRLNELFRREVERAQ 343 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAA 182 Y SIV DID+FK++ND GH GD+ + + + V GT VGR GGEEF Sbjct: 344 RYRRPFSIVILDIDHFKRVNDELGHLAGDRTLQVFAGVVRDSVRGTDT-VGRWGGEEFLV 402 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 ++ +EA LA LR + +Q G IH T+SAG+A + + T+++RAD Sbjct: 403 LCPETTAEEAVQLAERLRGSLRATQF---EGGRIH-TLSAGVAAFREGDSVDTLLHRADT 458 Query: 243 ALYVAKKSGRNRV 255 ALY AK GR+RV Sbjct: 459 ALYRAKNGGRDRV 471 >gi|229917001|ref|YP_002885647.1| diguanylate cyclase [Exiguobacterium sp. AT1b] gi|229468430|gb|ACQ70202.1| diguanylate cyclase [Exiguobacterium sp. AT1b] Length = 361 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 99/195 (50%), Gaps = 7/195 (3%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRI---SQLSRIDCLSGLLNHSA---FISSL 122 +SLV+ I +L+G +S + +L + R Q S D L+GL N + +S+ Sbjct: 157 VSLVLTIWMIGMLVGLLSSILTIDLEQTTRRAIEYKQSSERDHLTGLYNRRVWDRYTASV 216 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 G N +++ DID+FK +ND +GH GD V+ ++ L V V R+GGEEF Sbjct: 217 GQENRTYNVLALDIDHFKHVNDTYGHGNGDLVLQQFANILKVETRAHDTVARIGGEEFVI 276 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 S ++ +AN +R+ I ++ P I IT S G+A PI ++ AD Sbjct: 277 LMYDLSPEKVDKVANRIRERIATELFYLNDFPPIQITTSVGVAHGT-SLPIKRMVDLADS 335 Query: 243 ALYVAKKSGRNRVVC 257 ALY AK GRN+VV Sbjct: 336 ALYQAKNEGRNQVVV 350 >gi|288958904|ref|YP_003449245.1| two-component response regulator modulated diguanylate cyclase [Azospirillum sp. B510] gi|288911212|dbj|BAI72701.1| two-component response regulator modulated diguanylate cyclase [Azospirillum sp. B510] Length = 290 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G +N F+ Y+ LS+V DID+FK++ND GH GD Sbjct: 113 LERLATTDPLTGAMNRRRFLERGAEEFTRSRRYDRPLSVVMLDIDHFKRVNDTHGHATGD 172 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + I + +GRLGGEEFA + A A LR+ I + + Sbjct: 173 EAIRGTVRACKETLRSCDIIGRLGGEEFAVVMPETPPVNAFAAAQRLRQAIAAKPVRLEE 232 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 G +H+T+S G++ I ++ RAD ALY AK +GRNRV Sbjct: 233 GGEMHVTVSLGLSWMNASDSGIEPLLARADAALYRAKNAGRNRV 276 >gi|28211414|ref|NP_782358.1| signalling protein [Clostridium tetani E88] gi|28203855|gb|AAO36295.1| possible signalling protein [Clostridium tetani E88] Length = 345 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/181 (36%), Positives = 98/181 (54%), Gaps = 20/181 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLS-----IVFFDIDYFKQ 141 LKEL + +++S L D L+G+ N I LG+ K+ + D+D FK+ Sbjct: 169 LKELSMELHKMSYL---DSLTGMYNRRK-IMQLGNGLIIKAKICRSPYFVAMMDVDDFKE 224 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GH +GDK + +S V GRLGGEEF G ++E L N+LRK Sbjct: 225 INDTYGHALGDKALLVISQICVDNLKGKCNFGRLGGEEFIFIVTGKDKKEVMELMNELRK 284 Query: 202 -----IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 +IE NI +I IT+S G+ + + E + II RAD+ALY+AK++G+N+V Sbjct: 285 EISKEVIEKPIRNIKR--NIKITVSIGVTDLKDQDESLEDIIQRADEALYLAKRNGKNKV 342 Query: 256 V 256 + Sbjct: 343 I 343 >gi|218782319|ref|YP_002433637.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218763703|gb|ACL06169.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 301 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 14/182 (7%) Query: 90 LKELFIS---YNR-ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138 +KEL+ S NR + +L+ D L+GL NH F ++ Y+E LS V DID+ Sbjct: 121 IKELYESLQETNRQLQELANRDGLTGLYNHRYFQDAMTKDFQRAMRYHESLSCVLCDIDF 180 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+ ND +GH GD V++ L+ + R GGEEFA + A ++A Sbjct: 181 FKKFNDTYGHQTGDIVLSTLARIVEDSLRDTDLAARYGGEEFALVLYHTPAAAAFMVAER 240 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256 LR+ +E + I++ S+ +TIS G+A H + T+I AD+ALY AK++GRN+V+ Sbjct: 241 LRESVEQHEF-IANDLSLSVTISVGVATYPHPDIPDHKTLIECADKALYKAKENGRNQVI 299 Query: 257 CF 258 F Sbjct: 300 SF 301 >gi|154175016|ref|YP_001407900.1| 3-deoxy-d-manno-octulosonic-acid transferase [Campylobacter curvus 525.92] gi|112803394|gb|EAU00738.1| 3-deoxy-d-manno-octulosonic-acid transferase [Campylobacter curvus 525.92] Length = 422 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 87/165 (52%), Gaps = 8/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 N+I+ + D L+ + N F + Y E +I DID+FK IND +GH Sbjct: 255 NQIANFANRDFLTSVYNRRYFYDDMTQYLAKAEETAEPYAIAMIDIDHFKNINDTYGHDS 314 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDKV+ FL+ +LV V R GGEEF S++EA +LR I NS+I++ Sbjct: 315 GDKVLQFLAKKLVDDTKGNDIVARFGGEEFCVVLKNISQEEAVKFFVNLRAKIANSKISL 374 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ T+S G+ + ++ AD+ALY+AK+SGRNRV Sbjct: 375 KKN-VINFTVSIGVVFNRSDYRLDELLELADEALYIAKESGRNRV 418 >gi|186477632|ref|YP_001859102.1| diguanylate cyclase [Burkholderia phymatum STM815] gi|184194091|gb|ACC72056.1| diguanylate cyclase [Burkholderia phymatum STM815] Length = 316 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 12/209 (5%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 ++ + L+EN +V+ IS L S + ++ R Q +R D L+GL N Sbjct: 109 WFWMTESLLENDWIVLTGTEISALR-----SNEQAWIGAHERAVQEARTDALTGLANRRH 163 Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 +SSL L++ D+D+FKQIND+ GH GD V+ + Sbjct: 164 SMSSLELAITAAAGTETPLTVALVDLDHFKQINDSHGHAAGDAVLRDFGEVCRHATRQTD 223 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 GR+GGEEF +S + +R+ + + ++ ++ +I + SAG+ Sbjct: 224 IAGRIGGEEFLVVFPSTSVEHGVSAVERMRRQVLSRRVQVADDRAIRYSFSAGVCRVELS 283 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + ++T + RAD ALY AK+ GRNR V +S Sbjct: 284 DDLNTTLARADSALYSAKREGRNRTVAWS 312 >gi|50121764|ref|YP_050931.1| hypothetical protein ECA2840 [Pectobacterium atrosepticum SCRI1043] gi|49612290|emb|CAG75740.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043] Length = 490 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/165 (39%), Positives = 89/165 (53%), Gaps = 8/165 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVG 151 R+ Q++ D L+GL+N AF LG+ N + LSI+ DID+FK+IND +GH VG Sbjct: 324 RLEQMATTDKLTGLMNRQAFDYLFRRLGTKNALQHKSLSILLIDIDHFKKINDKYGHNVG 383 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ +S L + R GGEEF A A LR IE + + Sbjct: 384 DLVLQEVSAILSTNTRSSDQSCRWGGEEFVILLDDCDINAAQQRAEALRHSIEIAHLPYR 443 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+S G+AE E +S +I RAD ALY AK+ GRN+V+ Sbjct: 444 EG-IIQVTVSCGVAEYRDGETLSMLINRADIALYQAKQQGRNQVM 487 >gi|225848278|ref|YP_002728441.1| signal transduction response regulator [Sulfurihydrogenibium azorense Az-Fu1] gi|225643341|gb|ACN98391.1| signal transduction response regulator [Sulfurihydrogenibium azorense Az-Fu1] Length = 271 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY----NEK---LSIVFFDIDYFKQINDNFGHPVGDK 153 Q + ID L+G++N +F +LG+ EK +++ DID FK +ND +GH GD Sbjct: 108 KQDATIDFLTGVVNRRSFDRTLGNLLKEVREKDYIFTLILLDIDNFKSVNDTYGHLAGDL 167 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ +S L + +GR+GGEEF G S + +A +R IIEN ++ Sbjct: 168 VLKEISTVLRIFLRANTIIGRIGGEEFGIILPGVSLENGIKVAERIRSIIENREVKFED- 226 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I T S G+ E ++ +I R D+ALY+AK++G+NRV Sbjct: 227 RIIKFTASFGVTESKKEDTKESIYKRVDEALYIAKRNGKNRVA 269 >gi|116250265|ref|YP_766103.1| GGDEF domain-containing regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254913|emb|CAK05987.1| putative transmembrane sensory box GGDEF domain protein [Rhizobium leguminosarum bv. viciae 3841] Length = 419 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 7/192 (3%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124 E+LSL + I +G +S ++ + + +R+ ++ D L+GLLN A G+ Sbjct: 214 EDLSLAV-CIAGMTGIGALSLALHQWRLAARHRLDAIT--DPLTGLLNRRALFDQYGTRP 270 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 +++ FDID+FK +ND FGH GD+V+ + +L T RLGGEEF Sbjct: 271 MGTTTAVIVFDIDHFKSVNDRFGHATGDRVLNVFAGELSAHCRTGDTAARLGGEEFVLVL 330 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243 A + A +R+ E +I+I + T+S G+A R T++ AD+A Sbjct: 331 KEIMPGRAELTAERIRRAFEAREIHIDD-EVLTCTVSVGVAPGRSKSLDFDTMLSAADKA 389 Query: 244 LYVAKKSGRNRV 255 LYVAK++GRNRV Sbjct: 390 LYVAKRAGRNRV 401 >gi|28898257|ref|NP_797862.1| hypothetical protein VP1483 [Vibrio parahaemolyticus RIMD 2210633] gi|153837780|ref|ZP_01990447.1| ggdef domain containing protein [Vibrio parahaemolyticus AQ3810] gi|260878597|ref|ZP_05890952.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|260898777|ref|ZP_05907218.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus Peru-466] gi|28806474|dbj|BAC59746.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149748885|gb|EDM59720.1| ggdef domain containing protein [Vibrio parahaemolyticus AQ3810] gi|308087876|gb|EFO37571.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus Peru-466] gi|308091353|gb|EFO41048.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|328473732|gb|EGF44567.1| hypothetical protein VP10329_13755 [Vibrio parahaemolyticus 10329] Length = 320 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S++SR D L+GL N + + SL + S+V FDID+FK++ND +GHP GD Sbjct: 152 LSEISRKDGLTGLFNRAFWEQSLKDEFAHLKVIDGPCSLVIFDIDHFKKVNDTYGHPTGD 211 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI S L + GR GGEEF +++++A A LRK IE + + Sbjct: 212 EVIRRTSALLRKTARSSDICGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQEIVKVED 271 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ TIS G+ E + + E + + AD ALY AK++GRN+ Sbjct: 272 F-LINYTISIGVCEYKPYFESHTQWLKSADAALYRAKENGRNQT 314 >gi|89099973|ref|ZP_01172844.1| putative diguanylate cyclase (GGDEF) [Bacillus sp. NRRL B-14911] gi|89085365|gb|EAR64495.1| putative diguanylate cyclase (GGDEF) [Bacillus sp. NRRL B-14911] Length = 280 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 10/240 (4%) Query: 24 PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83 P +I+F I + + A + +F GL +E+L+ ++ +L+ Sbjct: 44 PAVILIFFLILRAKWGAVYSLFIFVIIFAFGLMNLPNASGDSLESLAQFYVAYLFYILVF 103 Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFK 140 Y++ + K LF + +++ D L+G+ N ++ +E S++FFDID+FK Sbjct: 104 YMALHLFK-LFSELESMKRVAYTDSLTGIANRLRIDGWLEEWIKKSEGFSVIFFDIDHFK 162 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND +GH GD V+ L+ + GR GGEEF + E A LA LR Sbjct: 163 CVNDTYGHDAGDLVLKQLASLVRQPLTGAELFGRWGGEEFIILTPKTGES-AVNLAEKLR 221 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 K+I S S P+ + T S G+A+ + + +++ RADQ LY +K GRNR V F D Sbjct: 222 KVIMES----SFPPAGNQTASFGVAQYKKGDTVDSLLSRADQGLYQSKHEGRNR-VTFGD 276 >gi|307720510|ref|YP_003891650.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306978603|gb|ADN08638.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 515 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 8/163 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q S+ D L+ L N A + Y +IV FDID+FK++ND +GH GD Sbjct: 350 VKQESKEDFLTKLYNKRALDEFMNMKEGEYKRYGRNFAIVMFDIDHFKKVNDTYGHEAGD 409 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V++ + L T +GR GGEEF + + Q I A +RK +E ++ + Sbjct: 410 AVLSAFAKILKKESRTVDIIGRFGGEEFLSLLSETDLQGGVIFAEKVRKHVEKTRF-VYK 468 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G I +T+SAGI++R + + AD+ LY AKK GRN+ Sbjct: 469 GKRIKVTVSAGISQRSDHISLEAAVNSADEYLYKAKKEGRNKA 511 >gi|146340506|ref|YP_001205554.1| hypothetical protein BRADO3548 [Bradyrhizobium sp. ORS278] gi|146193312|emb|CAL77328.1| conserved hypothetical protein; putative Diguanylate-cyclase (DGC) or GGDEF domain [Bradyrhizobium sp. ORS278] Length = 355 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 16/204 (7%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--------SAFISSLGS 124 I+ +SL ISG L S I S D L+GL N +A ++ L + Sbjct: 152 ILEERLSLSKDEISG-----LQHSLEAIRAESLTDPLTGLGNRKYFDRMIETAVLTGLAT 206 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 N+ LS++ FDID+FK ND++GH GD+V+ + L R GGEEFA Sbjct: 207 -NQPLSLLMFDIDHFKSFNDSYGHLTGDQVLRLVGLTLKHAVKGQDIAARYGGEEFAVVL 265 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQ 242 ++ ++A +A+ +R+ + ++ S I +TIS G++ + +I RAD Sbjct: 266 PNTALRQALAVADQIRRAVTAKELKKKSTGEILGRVTISVGVSMLRPGDDTDALIERADA 325 Query: 243 ALYVAKKSGRNRVVCFSDIENNTC 266 LY AK +GRNRVVC SD E T Sbjct: 326 CLYAAKHNGRNRVVCESDPEYATA 349 >gi|189425735|ref|YP_001952912.1| diguanylate cyclase [Geobacter lovleyi SZ] gi|189421994|gb|ACD96392.1| diguanylate cyclase [Geobacter lovleyi SZ] Length = 459 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/183 (36%), Positives = 90/183 (49%), Gaps = 14/183 (7%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFF 134 I+ LKEL + ++ +++ ID L+GLLN A L E+LS + Sbjct: 272 INNRFLKELREAQEKLVEMATIDSLTGLLNRRA---GLERVEEELSRHQRSERAFACLLL 328 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID FK+IND +GH GD V++ L V R GGEEF +S A Sbjct: 329 DIDRFKKINDTYGHQAGDAVLSEFGATLRRHVRKHDIVCRYGGEEFLLLLPDTSPSAART 388 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 A +R + + I + +G I +T S GI+ E +I RAD ALY AK SGRNR Sbjct: 389 TAEKIRAVTAATPI-MFAGRQIAVTTSIGISMMQGDETAKAMIARADAALYEAKNSGRNR 447 Query: 255 VVC 257 VVC Sbjct: 448 VVC 450 >gi|86749790|ref|YP_486286.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] gi|86572818|gb|ABD07375.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] Length = 411 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+GL N F + E+ ++++ FD+D+FK IND FGHP GD+VI Sbjct: 220 LDPLTGLFNRRGFSEATARMIEREAEAGRPVTVMIFDLDHFKSINDRFGHPAGDEVIKLF 279 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + GR+GGEEF AA L S EA A +R+ E + + P I Sbjct: 280 AAIVSGSLRISDLCGRIGGEEF-AALLPCSIDEAMTAAERVREAFEGCGLEVDGAP-IAT 337 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T+S G+A + ++ AD ALY AK+ GRNRVV Sbjct: 338 TVSIGVAGGPANIELDVLLAAADTALYQAKRGGRNRVVA 376 >gi|309778893|ref|ZP_07673663.1| GAF domain/GGDEF domain protein [Ralstonia sp. 5_7_47FAA] gi|308922240|gb|EFP67867.1| GAF domain/GGDEF domain protein [Ralstonia sp. 5_7_47FAA] Length = 348 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 106/211 (50%), Gaps = 17/211 (8%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 PF E L+++L+ + S L SIL EL ++ + S D + G+ N Sbjct: 138 PFEQAERELLDDLASWVESGFRERELSETQRSILTELQVARHE----SLTDPMLGIWNRR 193 Query: 117 AFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 A + L Y + LS++ D+D+FK++ND +GHP GD V+ ++ +L V Sbjct: 194 AAMELLTRECGHAMRYGQPLSLLVVDVDHFKRVNDTYGHPAGDAVLVEIARKLRVNARPV 253 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 VGR GGEEF ++ +A +A LR +E+ +I I TIS G+A C Sbjct: 254 DAVGRYGGEEFLVLLPDTTTTQATGIAERLRSAVESLEIATPEA-DIRCTISVGLAS-CE 311 Query: 230 --KEPIST--IIYRADQALYVAKKSGRNRVV 256 + P + +I RAD AL AK+ GRNRV+ Sbjct: 312 QGQNPCTPTDLIMRADAALLAAKRLGRNRVI 342 >gi|75906449|ref|YP_320745.1| diguanylate cyclase [Anabaena variabilis ATCC 29413] gi|75700174|gb|ABA19850.1| Putative diguanylate cyclase (GGDEF domain) [Anabaena variabilis ATCC 29413] Length = 332 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 18/199 (9%) Query: 74 ISITISLLLGYISGSILK-----ELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121 ++ T +L+LG ++ + K +L + +S ++ D L+ L N A I+ Sbjct: 121 VTATHNLILGQLTVGLRKAQKYRDLLQKNHILSAIALADSLTELNNRRALEWDLPRQITK 180 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + N LS+V D+DYFK++ND +GH +GD+++ L +L + R GGEEF Sbjct: 181 ARNQNLPLSLVILDVDYFKKVNDQYGHLIGDRLLQLLCTRLRHNLRSQDTAFRYGGEEFV 240 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC----HKEPISTII 237 ++ +EA I+A L +I+ Q +I+S I +TIS G+A C E ++++ Sbjct: 241 VILAHTTGEEAMIVAERLNRIVGEQQFSINSKLMISVTISLGVA--CLGTDDDEQGNSLL 298 Query: 238 YRADQALYVAKKSGRNRVV 256 RADQ L AK SGRN+V+ Sbjct: 299 DRADQCLLAAKASGRNQVI 317 >gi|254449889|ref|ZP_05063326.1| sensor histidine kinase [Octadecabacter antarcticus 238] gi|198264295|gb|EDY88565.1| sensor histidine kinase [Octadecabacter antarcticus 238] Length = 212 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F+ S+ EK ++ FD D FK NDN GH GD V+ L+ Sbjct: 48 DPLTGLYNRRYFMDSMRRETVSFERGEKGFGLISFDADKFKTFNDNHGHEAGDLVLRALA 107 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +++V V R+G EEFA + EA A LR+ +E ++ + GP +T Sbjct: 108 ERMVAVMPDDAICARIGREEFAILVPKTDLDEALACAESLRRDVEAIEVRTAFGPLPRVT 167 Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS+G +A P S ++ +AD+ALYVAK GRNRV Sbjct: 168 ISSGVVAHDGGATPPSVLMKQADEALYVAKAGGRNRV 204 >gi|271501393|ref|YP_003334418.1| diguanylate cyclase [Dickeya dadantii Ech586] gi|270344948|gb|ACZ77713.1| diguanylate cyclase [Dickeya dadantii Ech586] Length = 294 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 5/150 (3%) Query: 107 DCLSGLLNHSAFISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 D L+ L N F+ +L + N+K+S++ DID+FK IND+ GH VGD+V++ DQL + Sbjct: 144 DELTRLPNRRYFVETLSNTTNKKMSMMIIDIDFFKHINDSRGHDVGDEVLSRFGDQLKDI 203 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 T + V R+GGEEFA G S E A + + N +++ G I++S G+ Sbjct: 204 SVTALKVFRIGGEEFAVIGEGLSRYEVIRYAEAICRDARNIRLDDGQG----ISVSIGVG 259 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R E ++I + D+ALY AK++GRNR+ Sbjct: 260 FRKVGESQQSLIKKTDKALYRAKENGRNRI 289 >gi|45655764|ref|YP_003573.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602735|gb|AAS72210.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 524 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 38/247 (15%) Query: 30 YFSIFFSIFIATVIFIANI----FLFYI--GLTPFYGLEYILVENLSLVIISITISLLLG 83 Y+ FF I V + I FLF + L PF+GL +L I+SI Sbjct: 293 YYWAFFEIKDQEVRLVHRISAVEFLFSVILNLLPFWGL------ICTLGIVSIL------ 340 Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136 YI +L S ++S++ D L+G+ N F+ ++ + + +I+ DI Sbjct: 341 YI------KLKASMEQVSKMIHTDPLTGIANRRGFLKLTQKSLVTIHRHGQSWTILMIDI 394 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FKQ+ND FGH GD+++ +S L V R GGEEFA G + +++ +A Sbjct: 395 DHFKQVNDRFGHDTGDRILIKVSQILSANIRQTDVVCRWGGEEFAVFLFGVTPEDSINIA 454 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR----ADQALYVAKKSGR 252 LRK +E+ + P +T+S GI+E + + + ADQALY AK GR Sbjct: 455 EHLRKEVESKVVLKDGKP---VTLSIGISEGKSGKSSGSGLENAFACADQALYQAKTLGR 511 Query: 253 NRVVCFS 259 NRV F Sbjct: 512 NRVCVFD 518 >gi|311696418|gb|ADP99291.1| GGDEF family protein [marine bacterium HP15] Length = 355 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 96/188 (51%), Gaps = 24/188 (12%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131 +++ ++ G + +EL ++L+ D L+G LN S L Y S+ Sbjct: 160 AMIFAWLVGKLQQEL-------TRLATTDPLTGCLNRSQLADILNGQIQMRERYERVSSL 212 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + D+DYFK IND +GH GDKV+ ++ +L + R+GGEEF + +++ Sbjct: 213 ILLDLDYFKTINDQWGHLAGDKVLTEMALRLRSRLRESDQLFRIGGEEFMIVLPETRQKD 272 Query: 192 AAILANDLRKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 A +LAN L +IS+ P I +T SA +AE E S + RADQALY AK Sbjct: 273 ADVLANQL-------LTSISARPFLEDIKVTASASVAEVSKGETWSVWLNRADQALYEAK 325 Query: 249 KSGRNRVV 256 GRN+VV Sbjct: 326 SRGRNQVV 333 >gi|313607500|gb|EFR83825.1| ggdef domain-containing protein [Listeria monocytogenes FSL F2-208] Length = 260 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 123/251 (49%), Gaps = 23/251 (9%) Query: 17 KNLESFSPHTFMIYFSIFFSIFIATV-IFIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75 K LE F I I S + + + +A LF+I +T F +L+ +LVI + Sbjct: 24 KRLEKFKIWGVFILNIIACSFVVINLHLILARESLFWINMTIF-----VLI---ALVIGA 75 Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEKLSIVFF 134 ++ L+ I K+LF Y + S L + LS + I+ + S + +++++ Sbjct: 76 VSAGLMSNMIKS---KQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDSGSRQVTLMLI 132 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQ 190 DIDYFK IND +GH GD ++ QL V+ G R GGEEF+ L S + Sbjct: 133 DIDYFKNINDTYGHDAGDAILK----QLAVILKASTTDGSEAFRNGGEEFSIVLLDCSIE 188 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKK 249 E +A +RK E I G + ITIS G++ S +++ AD+ALY AK Sbjct: 189 EGNKVAEQVRKETEEHDFVIPGGQKVKITISVGVSSNKAGANTSEGLFKSADEALYKAKL 248 Query: 250 SGRNRVVCFSD 260 +GRNR VC +D Sbjct: 249 TGRNR-VCIAD 258 >gi|298293748|ref|YP_003695687.1| diguanylate cyclase [Starkeya novella DSM 506] gi|296930259|gb|ADH91068.1| diguanylate cyclase [Starkeya novella DSM 506] Length = 590 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 7/164 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-SYN--EKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +R++ L+ +D L+G+ N +F ++L +N +L+++ DID FK ND +GH GD Sbjct: 410 HRLNSLASLDPLTGIANRRSFDAALALQWNTVSQLAVLMIDIDKFKAFNDLYGHKEGDSC 469 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I ++ + V RLGGEEFA +S + A A LR+ +E + GP Sbjct: 470 IRLVAQTMASTLRGTDLVARLGGEEFAVLMPSASLRAATEAAQRLRRAVETVAVPHRGGP 529 Query: 215 SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255 + +T+S G A C EP S ++ AD+ALY AK +GRN V Sbjct: 530 AGVVTVSIGCAA-CEPEPGLTSSDLMVAADRALYEAKAAGRNEV 572 >gi|301299632|ref|ZP_07205892.1| prevent-host-death family protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852776|gb|EFK80400.1| prevent-host-death family protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 310 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 12/205 (5%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDC----LSGLLNHSAFISSLGSYNEK 128 II +T+ LL + ++ +++R D L+ LLN+ +F S + ++K Sbjct: 97 IIDVTLGTLLMFAVANVYVNFLTKQYEELRMARYDVSHDGLTNLLNYDSFHSHMNELSQK 156 Query: 129 LS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV----FGTPMFVGRLGGEEF 180 S I DID FK+ ND +GH G+ V+ + + +L FG V R GGE F Sbjct: 157 SSRHQIICILDIDDFKKFNDTYGHLEGNDVLVYFTKRLFAEVKAHFGELASVYRFGGEGF 216 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 + G + ++ + + L + + ++G I +T S GIA C K+ I T++ A Sbjct: 217 CVSVHGVTVEDCLEMTDKLAEELRTKDYVTATGDKITVTFSGGIALECDKKDIKTVLREA 276 Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265 D+ALY +K+ + V C D+E + Sbjct: 277 DKALYYSKRHKKGSVTCAKDLEKKS 301 >gi|323500035|ref|ZP_08104989.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326] gi|323314891|gb|EGA67948.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326] Length = 315 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 20/185 (10%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NE-KL-----SIVFFDID 137 IS ++ KE ++ QL D L+GL+N F+S L SY N+ KL S++ D+D Sbjct: 137 ISRTVEKE-----RQVKQLLERDELTGLVNRRTFLSKLTSYFNQFKLNGLHTSVLIIDLD 191 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK ND GH GDKV+ ++D + +GRLGGEEFA S +A + Sbjct: 192 RFKHWNDTLGHVTGDKVLKHVADLCSKQLRSVEIIGRLGGEEFAVILPNVSSDKALAIGE 251 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRN 253 LRK +E + + I +TIS G+ C P T I+ R+D+A+Y +K +GRN Sbjct: 252 RLRKSVEQTPYR-DNDQEIKVTISVGV---CSFSPSDTSKLDILERSDKAMYKSKHTGRN 307 Query: 254 RVVCF 258 +V + Sbjct: 308 KVSTY 312 >gi|195953783|ref|YP_002122073.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1] gi|195933395|gb|ACG58095.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1] Length = 497 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 ++ EL + ++ D L+G+ N F I N + IV +DID FK Sbjct: 310 KLVSELQKDKEKFQDMAYKDALTGIYNRRFFFEEINISIEQAKRANVPICIVMYDIDNFK 369 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ++ND +GH +GD V+ ++ +V RLGGEEFAA + + +AN++R Sbjct: 370 KVNDTYGHDMGDVVLKDFANVIVSSIRKSDIPARLGGEEFAAYLYNTDIENGFRVANNIR 429 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ENS + +G +I T S GI + ++ I + + + D+ALYVAK++ +NRVV + + Sbjct: 430 QNFENSTHTL-NGTTIKCTCSGGIYQIQQEDGIDSALKKVDEALYVAKRTTKNRVVIYKE 488 >gi|311278684|ref|YP_003940915.1| diguanylate cyclase [Enterobacter cloacae SCF1] gi|308747879|gb|ADO47631.1| diguanylate cyclase [Enterobacter cloacae SCF1] Length = 507 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 19/209 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118 +L ++LV+++ T LLL Y+ + F+ ++ Q + D L+GL N F Sbjct: 304 VLCSIIALVVMATTQWLLLNYMHTN-----FLQRQQLIQEAMYDALTGLANRRHFNERVQ 358 Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 + + LS++ D+D+FK+IND +GH VGD+V+ + L + + R+G Sbjct: 359 WACRTAQRKRQPLSVLSIDLDHFKRINDYYGHSVGDEVLRCIGQLLPGLVREGDIIARVG 418 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE----- 231 GEEF L + +EA ++A +R N I+ G I T S G+ + E Sbjct: 419 GEEFVVVMLSTELEEAGVVAEHIRASFANQSIDF-HGRKIQFTASFGLTQIMPDELDVSD 477 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSD 260 I + RAD+ LY AK+ GRNR VC D Sbjct: 478 GIKVALDRADRGLYRAKREGRNR-VCRVD 505 >gi|293610559|ref|ZP_06692859.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826903|gb|EFF85268.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 397 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 133/288 (46%), Gaps = 36/288 (12%) Query: 7 DFLSIWLCHEKNL-ESFSPHTFMIYFS-------------IFFSIFIATVIFIANIFLFY 52 F ++ LCH+ L S SP T + Y ++ ++ AT+I +L Sbjct: 111 QFFALMLCHDGYLIGSISPATMVGYVGTIGVGLVLFDRKIVYSALVPATIILTVCTYLSM 170 Query: 53 IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK---------ELFISYNR---- 99 G L Y + N + + T S LG ++ I+ E+ ++ R Sbjct: 171 TG-----ALAYAPLFNFRAMDHAQTNSFWLGSMAFFIMPILLACFVLFEILLTQWRQRET 225 Query: 100 -ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155 I +LS+ID L+ +LN + L S +++ ++V DID+FK+IND +GH GD+V+ Sbjct: 226 YIQRLSQIDPLTNVLNRRSLNMHLESLHQQQFDYAVVLLDIDHFKKINDIYGHHQGDQVL 285 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L + +GR GGEEF + +A +A R+ ++ + + Sbjct: 286 IEIAQCLSENLRSEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELPVFTAQNNP 345 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 IHI+ S GI+ E +I +ADQALY K SGRN+V F E Sbjct: 346 IHISASFGISSSAFAEDPYLVIRQADQALYAVKASGRNQVRTFHQTET 393 >gi|118578533|ref|YP_899783.1| PAS/PAC sensor-containing diguanylate cyclase [Pelobacter propionicus DSM 2379] gi|118501243|gb|ABK97725.1| diguanylate cyclase with PAS/PAC sensor [Pelobacter propionicus DSM 2379] Length = 301 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 90/174 (51%), Gaps = 8/174 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL ++ +++ +D L+G+ N S L G Y+ S++ DID+FK++ND Sbjct: 129 ELATYEQKLIEMNTVDALTGVYNRRFLESRLKEECDRYGRYSRPFSLMMIDIDFFKKVND 188 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD V+ ++ + F+ R GGEEF + A +A LR IE Sbjct: 189 THGHQGGDLVLKNVAAGAAAMIRKSDFLARYGGEEFCCLLPETDCDAAETVAEHLRAHIE 248 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 N + ++ I +TIS GIA + T++ RAD+ALY AK+SGRNR V F Sbjct: 249 NME-HLFQKKVIRVTISLGIACFAPDDSPETLVKRADEALYQAKRSGRNRFVRF 301 >gi|311696602|gb|ADP99475.1| sensory box/GGDEF/GAF/EAL domain protein [marine bacterium HP15] Length = 449 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 89/169 (52%), Gaps = 12/169 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152 + Q S D L+G N F L E+L ++V FD D+FK++ND++GH VGD Sbjct: 277 LRQTSTTDDLTGAANRRRFTEVLSWEFERLKRNGAGYAVVLFDFDWFKRVNDHYGHHVGD 336 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ + ++ T +GR+GGEEFA E A A LR+ +E Q+ Sbjct: 337 LVLRETAHRIKNELRTGDTLGRIGGEEFAVLLPQCDENSARQFAERLRRSVE--QLRFIG 394 Query: 213 GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + TI+ G+A +R ++P S I+ RADQA+Y K GRN+VV F Sbjct: 395 FDELRGTITCGVAISDRTDEKP-SQILVRADQAMYRGKAQGRNQVVVFD 442 >gi|119775755|ref|YP_928495.1| cyclic nucleotide phosphodiesterase [Shewanella amazonensis SB2B] gi|119768255|gb|ABM00826.1| diguanylate cyclase [Shewanella amazonensis SB2B] Length = 626 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/129 (41%), Positives = 79/129 (61%), Gaps = 3/129 (2%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS++ FD D+FK+IND+FGH VGDKV+ ++ VGR+GGEEF A ++ Sbjct: 495 LSVILFDADHFKKINDHFGHDVGDKVLIAMAQSSAGQMRRGDLVGRIGGEEFLALLPHTT 554 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYV 246 ++A +A LR IE + ++ P + ++ISAG+A + + S+ + RAD ALY Sbjct: 555 LEQAVEIAERLRLTIETTDLS-EVAPGLGMSISAGVATLDSSRDKNFSSFLNRADHALYR 613 Query: 247 AKKSGRNRV 255 AK +GRNRV Sbjct: 614 AKHNGRNRV 622 >gi|78355616|ref|YP_387065.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218021|gb|ABB37370.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 403 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 92/190 (48%), Gaps = 11/190 (5%) Query: 77 TISLL--LGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK----- 128 T+SL LG S + + ++ R + Q + D L+GLLN L + Sbjct: 201 TLSLFSALGEYSRAHTQRTLVALTREMEQCACTDPLTGLLNRRGIYDRLNEERARATRSG 260 Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 S++ D+D+FK +ND FGH GD V+ L++ V R GGEEF Sbjct: 261 STFSVILCDVDHFKNVNDCFGHQCGDHVLHQLAEHFRRSVRGQDVVCRWGGEEFLFILPE 320 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 + EQ A LA LR +E + +N P I IT+S G+ E E I ADQ LY+ Sbjct: 321 TDEQGALNLAEKLRSTVEQTPVNYHGMP-IDITLSLGVQECTLTESTEFHIRVADQKLYI 379 Query: 247 AKKSGRNRVV 256 AK+ GRN+VV Sbjct: 380 AKEHGRNKVV 389 >gi|150396684|ref|YP_001327151.1| diguanylate cyclase [Sinorhizobium medicae WSM419] gi|150028199|gb|ABR60316.1| diguanylate cyclase [Sinorhizobium medicae WSM419] Length = 398 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 10/179 (5%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKL--SIVFFDIDY 138 I G ++K++ + R S S ID LSGL N FI + + N K +++ D+D Sbjct: 206 ILGVMVKDI-VDAARAS--SEIDSLSGLWNRRGFIERVAPWLLSRNAKSPGALILTDLDR 262 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +ND +GH GD+VI + L+ + + RLGGEEFA G +A ++A Sbjct: 263 FKGVNDTYGHHTGDEVIRQFARVLLDLIPSRAAAARLGGEEFAVFLPGVDLADARVVAQG 322 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +R I ++ I + IT S G+A E + + RAD+ALYVAK +GRNRV C Sbjct: 323 MRAAIASTPIA-DLPETATITASFGVAAIAPGESLEMALQRADKALYVAKAAGRNRVEC 380 >gi|56420376|ref|YP_147694.1| hypothetical protein GK1841 [Geobacillus kaustophilus HTA426] gi|56380218|dbj|BAD76126.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 608 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 124/267 (46%), Gaps = 33/267 (12%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY---ILVENLSLVIISITISLLLGY--- 84 F S+ + +I I+ IF+F++ L Y + +L E + +++ +SL+L Sbjct: 141 FPYMVSLLVYFLINISLIFMFFVFLERVYKGAFNFGVLFEAMVSYCVTLILSLVLAILLD 200 Query: 85 ---------------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---- 125 I + ++ + Y +S + D L+GL NH F +L Sbjct: 201 KERYFGLFLFTVLVIILSVVFRKFIVLYELVSNRANKDHLTGLYNHGFFKEALKEQFSDC 260 Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFA 181 + L++ F D+D FK+ ND GH GD+++ F L V GT V R GGEEFA Sbjct: 261 KLLKQPLTLAFLDLDDFKKYNDRNGHLQGDRLLTFFGKLLQKAVGGTNFTVARYGGEEFA 320 Query: 182 AAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYR 239 +++++A N LRK + ++ + P ++ S GIAE +I+R Sbjct: 321 ILMPNTTKEDAYAFLNRLRKEVNDTYFEGVEHIPYRCLSFSCGIAEMEKDMHESDELIHR 380 Query: 240 ADQALYVAKKSGRNRVVCFSDIENNTC 266 ADQALY AK G+N V + ++N C Sbjct: 381 ADQALYYAKAQGKNNVQLYD--KHNMC 405 >gi|238026719|ref|YP_002910950.1| diguanylate cyclase [Burkholderia glumae BGR1] gi|237875913|gb|ACR28246.1| Diguanylate cyclase [Burkholderia glumae BGR1] Length = 241 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 8/169 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGH 148 +E+ N+++ + D L+G+LN SA I ++V DID FK+IND+FGH Sbjct: 72 REMQALANQLAHRASHDALTGVLNRSAVIERTAKTLRTRNAAMVVLDIDEFKRINDDFGH 131 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 P GD VI + D L + F+GR+GGEEF EA +LA +R+ + +S + Sbjct: 132 PTGDAVILGVVDCLRSIVVERGFIGRVGGEEFTVILPDCEASEAGMLAERMRRAMSDSLV 191 Query: 209 NISSGPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + IT S GI+ T AD+ALY AK+ GRNRV Sbjct: 192 V----PPVDRAITASFGISINAAGTSFDTAYGMADEALYRAKRGGRNRV 236 >gi|227114266|ref|ZP_03827922.1| hypothetical protein PcarbP_14933 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 281 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 17/193 (8%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121 LS+V++S + LL ++ L EL I ++R D L+G L AF +S Sbjct: 94 LSVVLLSAILGSLLSLLAKKYLIELPI-------IARYDDLTGYLRRDAFFLAANKALSI 146 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +S++ DIDYFKQ+ND+FGH +GD + F++D F GR+GG+EFA Sbjct: 147 ANLTKRPVSVILIDIDYFKQVNDSFGHSIGDDALKFVADTFKKSFRREDIFGRIGGDEFA 206 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240 + +A + + R+ + ++ ++G I +T+S G+ E E +S ++ RA Sbjct: 207 IVLPNTGLDDAYTIVDKARERVSDTPCETAAG-KIRLTVSIGLVEYHIAGEDLSEVMKRA 265 Query: 241 DQALYVAKKSGRN 253 D LY+AKK+ RN Sbjct: 266 DDNLYIAKKT-RN 277 >gi|315128100|ref|YP_004070103.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913] gi|315016613|gb|ADT69951.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913] Length = 619 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 15/181 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQI 142 L+EL + QL+ D L+G+ N F + S E+ LSI+ DID FK I Sbjct: 438 LRELEDKNRELEQLNMEDALTGVKNRRFFDKKIIMEIRRSRREQTPLSIIMLDIDKFKAI 497 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD+VI + D + P+ V R GGEEF ++ Q A +A +R Sbjct: 498 NDTYGHLTGDQVIRAVCDVIKQQLKRPLDEVARYGGEEFVVLLPNTNNQGALAIAEQIRC 557 Query: 202 IIENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IE + +++ +G +I TISAG IA+ H T AD+ALY+AK+ GRN+VV Sbjct: 558 AIEKNTVSV-AGTTIKYTISAGVYTHIADDVHNP--ETFTECADKALYLAKQHGRNQVVN 614 Query: 258 F 258 F Sbjct: 615 F 615 >gi|218533379|ref|YP_002424194.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] gi|218525682|gb|ACK86266.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] Length = 184 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/167 (38%), Positives = 89/167 (53%), Gaps = 17/167 (10%) Query: 102 QLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 Q + D L+ LLN A + G S + L+++ DID+FK IND +GH VGD VI Sbjct: 17 QQADTDHLTQLLNRGALMRRAGDALANASASAPLTLLQIDIDHFKGINDRYGHDVGDVVI 76 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP- 214 ++ V+ T GRLGGEEFA G AA++A+ +R SQ ++ P Sbjct: 77 RCVAR---VLRETGAITGRLGGEEFAVLMPGHGLAGAAVVAHRIR-----SQCAATAVPR 128 Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + T S G+AE + I T++ RAD ALY AK+ GRNRV S Sbjct: 129 QRDLQFTASIGLAEWTTGDTIDTLLKRADLALYAAKRGGRNRVAVTS 175 >gi|94500875|ref|ZP_01307401.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65] gi|94426994|gb|EAT11976.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65] Length = 294 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 10/191 (5%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-- 129 VI ++S+LL + ++ ++ + + + + D L+GL N F E++ Sbjct: 103 VIKPYSLSVLLARVRSALREKERLDL--MEKWATTDPLTGLYNRRFFFEQAQRELERVQR 160 Query: 130 -----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 S + DID+FK++ND +GH VGD V+ L+ F R GGEEF Sbjct: 161 NETDASFIILDIDHFKKVNDEYGHLVGDDVLEGLAKLFKETFRKVDLCCRFGGEEFVICL 220 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + + A ++A RK +E N GP +H+TIS G++ + ++ RAD AL Sbjct: 221 PDTDTEGALLVAERTRKKVEELSFNTEKGP-LHVTISLGVSSANENTTLEDMLKRADDAL 279 Query: 245 YVAKKSGRNRV 255 Y AK++GRNR Sbjct: 280 YQAKQNGRNRT 290 >gi|304392567|ref|ZP_07374507.1| diguanylate cyclase [Ahrensia sp. R2A130] gi|303295197|gb|EFL89557.1| diguanylate cyclase [Ahrensia sp. R2A130] Length = 417 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 90/169 (53%), Gaps = 10/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF------ISSLGSYNEKL--SIVFFDIDYFKQINDNFGHPV 150 R+ + ++ID ++ LLN F + S G E S+V DID FK IND GH Sbjct: 222 RLQRRTQIDSMTTLLNKHTFEIQANLLISPGRSAEGRGHSLVVCDIDNFKAINDTLGHAA 281 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VIA++ L T GR+GGEEFA +EQ+AA +A LR ++ + ++I Sbjct: 282 GDVVIAWIGRILGNTVRTSDLAGRVGGEEFALLLRDCNEQDAAAVAEALRDVVSSHAMDI 341 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G I +T S G+A E + RAD+ LY AK++GRN VC + Sbjct: 342 -EGRKIAVTASFGVAHAHFSESFPELFDRADKQLYRAKENGRN-CVCVA 388 >gi|114799302|ref|YP_761250.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444] gi|114739476|gb|ABI77601.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444] Length = 409 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 12/176 (6%) Query: 95 ISYNRISQL---SRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQIN 143 I+ + I QL +R D LSGLLN F ++ + +N + ++ D+D+FKQIN Sbjct: 215 IAIDLIDQLRHEARADKLSGLLNRGGFEAAADALLKRHKPGHNLPVCLIIADLDHFKQIN 274 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH VGD VI + + M GR+GGEEFA G Q A + A LR Sbjct: 275 DTFGHSVGDAVIGLFGRHVAAMTSEEMIAGRIGGEEFAVLLPGHEIQAARLFAESLRACP 334 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + G + ++S G+A + +++ AD+ALY AK++GR++V F Sbjct: 335 WDYWSGMLPG-GLAPSVSIGVAGGWPGVDLYSLMNNADEALYDAKRAGRDQVRLFG 389 >gi|239907560|ref|YP_002954301.1| putative signaling protein [Desulfovibrio magneticus RS-1] gi|239797426|dbj|BAH76415.1| putative signaling protein [Desulfovibrio magneticus RS-1] Length = 893 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 11/163 (6%) Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+G+ N A +SS YN + S+ FDID FK +ND +GH GD V+ Sbjct: 708 LATKDGLTGVSNRHHFMEISGALLSSATRYNTEFSVAIFDIDNFKMVNDTWGHSAGDMVL 767 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + F + +GRLGGEEFA + +S + AA R I+E++ P Sbjct: 768 KKICTLATAEFRSSDIIGRLGGEEFAISMPETSLENAAAAVERFRTIVESTIFEYDEIP- 826 Query: 216 IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 I+ITIS+G+A C H + I ++ AD LY AK+ GRN+ V Sbjct: 827 INITISSGVAA-CSKHTKAIDCLLKSADNFLYKAKRHGRNQTV 868 >gi|114797095|ref|YP_760220.1| putative diguanylate cyclase/response regulator [Hyphomonas neptunium ATCC 15444] gi|114737269|gb|ABI75394.1| putative diguanylate cyclase/response regulator [Hyphomonas neptunium ATCC 15444] Length = 313 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 95/179 (53%), Gaps = 19/179 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL ++++ L+ D L+GL N A + L LS++ DID+FKQ ND Sbjct: 121 ELKSLRDQLANLAVTDALTGLKNRRYLERTLRAECARLARDEAWLSVIMLDIDFFKQFND 180 Query: 145 NFGHPVGDKVIAFLSDQLVVVF----GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +GHP GD+ IA ++ L V TP R GGEEFA EA I+A ++R Sbjct: 181 TYGHPAGDRCIAMIAATLKRVVKRASDTP---ARYGGEEFACILPDLGPAEAEIVAQEIR 237 Query: 201 KIIENSQI-NISSGPSIHITISAGIAE-RCHK--EPISTIIYRADQALYVAKKSGRNRV 255 + + I +I S ++T+S G+A RCH EP + I + ADQ LY +K +GR+RV Sbjct: 238 RQVHALNIPHIRSQAEPYVTVSIGVASARCHSSIEPGTWITF-ADQELYRSKAAGRDRV 295 >gi|46201874|ref|ZP_00054171.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 352 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 10/208 (4%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 +L E + ++ + L L SG + + L + + + + D L+ L N F SL Sbjct: 138 MLAETKVMADLNRQLELRLENSSGEVAR-LRNQLDDLKREASTDALTQLANRKLFDHSLN 196 Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 + LS++ DID+FKQ ND +GH +GD+V+ ++ L + R G Sbjct: 197 LAVLDAQASEAPLSLLMIDIDHFKQFNDTYGHQLGDQVLKLVARSLSEIAQAKDTAARYG 256 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITISAGIAERCHKEPIS 234 GEEFA + +++ +A +R + ++ N +G + +T+S G A EP Sbjct: 257 GEEFAVILPATPLEKSMEVAEAIRNQVSTKRLTNRRTGQVLGQVTLSIGAARLKDAEPAD 316 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++++RAD+A+Y+AK+ GRNRV D+E Sbjct: 317 SLVHRADEAMYLAKRDGRNRVKNEIDLE 344 >gi|294653542|ref|NP_714784.2| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] gi|293630746|gb|AAN51799.2| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] Length = 507 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 38/247 (15%) Query: 30 YFSIFFSIFIATVIFIANI----FLFYI--GLTPFYGLEYILVENLSLVIISITISLLLG 83 Y+ FF I V + I FLF + L PF+GL +L I+SI Sbjct: 276 YYWAFFEIKDQEVRLVHRISAVEFLFSVILNLLPFWGL------ICTLGIVSIL------ 323 Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDI 136 YI +L S ++S++ D L+G+ N F+ ++ + + +I+ DI Sbjct: 324 YI------KLKASMEQVSKMIHTDPLTGIANRRGFLKLTQKSLVTIHRHGQSWTILMIDI 377 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FKQ+ND FGH GD+++ +S L V R GGEEFA G + +++ +A Sbjct: 378 DHFKQVNDRFGHDTGDRILIKVSQILSANIRQTDVVCRWGGEEFAVFLFGVTPEDSINIA 437 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR----ADQALYVAKKSGR 252 LRK +E+ + P +T+S GI+E + + + ADQALY AK GR Sbjct: 438 EHLRKEVESKVVLKDGKP---VTLSIGISEGKSGKSSGSGLENAFACADQALYQAKTLGR 494 Query: 253 NRVVCFS 259 NRV F Sbjct: 495 NRVCVFD 501 >gi|162456680|ref|YP_001619047.1| GAF/GGDEF domain-containing protein [Sorangium cellulosum 'So ce 56'] gi|161167262|emb|CAN98567.1| putative membrane protein (GAF and GGDEF domain) [Sorangium cellulosum 'So ce 56'] Length = 859 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 97/174 (55%), Gaps = 15/174 (8%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+ +D L+GLLN A I++ ++ +LS++ DID+FK++ND +GH VG Sbjct: 543 RLEELATMDGLTGLLNKRAMLEVADQKITAARRFSRRLSVLVTDIDHFKKVNDTYGHDVG 602 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI- 210 D +I L D L T V R GGEEF + + A +LA +R+ + + + Sbjct: 603 DVIIKGLGDVLRRAKRTTDAVARFGGEEFVVICEETDARGAMLLAERVREELGRTTFHAA 662 Query: 211 -SSGP-SIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259 SSGP +T S GIA + E ST + AD++LYV+K+SGRNR +S Sbjct: 663 GSSGPVQCQVTCSIGIA--TYPEAGSTWEELFKAADESLYVSKRSGRNRSTAWS 714 >gi|260365590|ref|ZP_05778117.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|308112925|gb|EFO50465.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] Length = 280 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S++SR D L+GL N + + SL + S+V FDID+FK++ND +GHP GD Sbjct: 112 LSEISRKDGLTGLFNRAFWEQSLKDEFAHLKVIDGPCSLVIFDIDHFKKVNDTYGHPTGD 171 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI S L + GR GGEEF +++++A A LRK IE + + Sbjct: 172 EVIRRTSALLRKTARSSDICGRFGGEEFTVLLPHTNQEQACYFAERLRKRIEQEIVKVED 231 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ TIS G+ E + + E + + AD ALY AK++GRN+ Sbjct: 232 F-LINYTISIGVCEYKPYFESHTQWLKSADAALYRAKENGRNQT 274 >gi|114704944|ref|ZP_01437852.1| periplasmic sensor diguanylate cyclase (GGDEF) [Fulvimarina pelagi HTCC2506] gi|114539729|gb|EAU42849.1| periplasmic sensor diguanylate cyclase (GGDEF) [Fulvimarina pelagi HTCC2506] Length = 367 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 21/226 (9%) Query: 50 LFYIGLTPFYGLEYILV-------ENLSLVIISITISLLLG-YISGSILKELFISYN--- 98 LF +GL L +IL E+ + +T++ LG + G +L + + ++ Sbjct: 136 LFAMGLASNIPLLFILTVPVPNAAEHFMRAVGPLTVADTLGVLVLGRVLSDAWRAHQSAE 195 Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 R+S + D L+GL N F +G ++ +S++ D+D+FK+IND+FGH G Sbjct: 196 RLSVEATTDPLTGLSNRRHFERRVGPLLQQANHQGTPVSLLVIDVDHFKRINDSFGHEAG 255 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++++ + + R GGEE A G+ + A +A +R +IE ++ I Sbjct: 256 DTVLVWIAEIVRSQVRGCDIIARYGGEELVVAMPGADSRRAMTVAERIRAVIE-AKGRIE 314 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G IT+S G++ R + + + AD+ALY AK+ GRNRVV Sbjct: 315 PGDGHRITVSIGVSTRLAR--YADLFSAADEALYAAKRQGRNRVVT 358 >gi|330963101|gb|EGH63361.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 425 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 11/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N A I++ + S + DID+FK +ND +GHP Sbjct: 255 QKLLEIAHSDPLTGLDNRRAAEHTLERMINTARISGKPFSFIICDIDHFKSVNDQYGHPA 314 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ L R GGEEF SS ++AA LA+ +RK +EN +I Sbjct: 315 GDSVLKSVAAILKHRIRAVDVAARWGGEEFLILVPDSSLKQAAELADRIRKGVENLEIP- 373 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +GP +TIS G++E E +++I RAD+ALY AK+ GRNRV Sbjct: 374 EAGP---VTISLGVSELSPGETAASLIQRADKALYQAKRLGRNRV 415 >gi|330958950|gb|EGH59210.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 794 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 18/184 (9%) Query: 87 GSILKELFIS----YNRISQ----LSRIDCLSGLLNH-------SAFISSLGSYNEKLSI 131 GS+L F+S R+ Q LS D L+G N A + + + LSI Sbjct: 609 GSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRFFQDRMQAELKRIDRHGGDLSI 668 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + D+D+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ + Sbjct: 669 IMLDVDHFKRINDRFGHAAGDQVLRSISEKISQRLRSDDVFCRLGGEEFMVVCPGTRSAQ 728 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A LA LR+ + N I G +T S GIA R E I ++ RAD +Y AK+ G Sbjct: 729 AYQLALSLREALRNQVIE---GVDHVVTASFGIASRRAGEGIDAMLLRADSGVYAAKQGG 785 Query: 252 RNRV 255 R+RV Sbjct: 786 RDRV 789 >gi|222083128|ref|YP_002542493.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] gi|221727807|gb|ACM30896.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] Length = 578 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 12/181 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFK 140 +I EL + R+ L+ D L+GL N F ++L + +K L ++ D+D+FK Sbjct: 391 AIEDELQDANRRLQALAEQDGLTGLANRRFFDNALLREAGRACQDKTSLGLLMIDVDWFK 450 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDL 199 ND +GHP GD+ + + + + P V R GGEEFAA + E AA +A + Sbjct: 451 AFNDCYGHPAGDECLKRIGGTIQKIVSRPGDVAARYGGEEFAALLPDTDEPAAAAIAEQI 510 Query: 200 RKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 R+ + I P+ TIS G A E EP +T+++ AD+ALY AK++GRNRV Sbjct: 511 RQAVLELAIEHRVSPNQVATISVGAAALTEGAVTEP-ATLLHNADRALYRAKENGRNRVA 569 Query: 257 C 257 C Sbjct: 570 C 570 >gi|242238673|ref|YP_002986854.1| diguanylate cyclase [Dickeya dadantii Ech703] gi|242130730|gb|ACS85032.1| diguanylate cyclase [Dickeya dadantii Ech703] Length = 490 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 110/204 (53%), Gaps = 16/204 (7%) Query: 61 LEYILVENLSL-VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118 L ++L++N L +++S+T+ +L+ G+ + R+ ++ D L+GL+N AF Sbjct: 292 LWFMLLKNTGLSILVSVTMLILIWLTIGAYQR-------RLELMATTDKLTGLMNRQAFE 344 Query: 119 --ISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 + +L + + S++ D+D+FK+IND +GH +GD+V+ + + F Sbjct: 345 YIVRTLRMKQSAQHHTFSLILIDLDHFKKINDKYGHNIGDRVLVRAASLIKRAIRKTDFA 404 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232 R GGEEF S +A +A +R+ + + ++ I +T+S G+AE E Sbjct: 405 CRWGGEEFVVLLGECSLHQAHQIAEKIRQAVRFALVS-HRHQVIDLTLSCGVAESHSGES 463 Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256 + ++ RAD+ALY AK+ GR+R V Sbjct: 464 LDHLVQRADKALYQAKRQGRDRAV 487 >gi|218886116|ref|YP_002435437.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757070|gb|ACL07969.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 552 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 13/176 (7%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+GL N + +S + + + D+D+FK IND GH GD Sbjct: 350 LERLSGTDELTGLANRRLLADAGARIVSICRRAGQPCACLMLDLDHFKHINDVHGHATGD 409 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ L+ ++ + F R+GGEEFA A + A LA LR+ +E + + Sbjct: 410 EVLRRLAAAIMATVRSSDFAVRMGGEEFAIIAPNTDATHAMALAERLRRNVERIDLRQAD 469 Query: 213 GPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 P + + IS G+A R P+ ++ RAD ALY AK++GRNRVV + D E Sbjct: 470 MP-VPVAISVGVAGMTVTPRYGAGPLEDLLARADHALYRAKQAGRNRVVLWDDAER 524 >gi|47568531|ref|ZP_00239230.1| GGDEF family protein [Bacillus cereus G9241] gi|47554773|gb|EAL13125.1| GGDEF family protein [Bacillus cereus G9241] Length = 351 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 SIFI + F N++ I + P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F IS+ + N+ L ++F DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNRHISNKRTKNDSLCLLFIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L + P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKQIGCILREISPFPDLAFRKGGEEFALLIPQKGLAYGMHMGEQVRTA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|262280505|ref|ZP_06058289.1| GGDEF domain-containing protein [Acinetobacter calcoaceticus RUH2202] gi|262258283|gb|EEY77017.1| GGDEF domain-containing protein [Acinetobacter calcoaceticus RUH2202] Length = 397 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 134/282 (47%), Gaps = 26/282 (9%) Query: 7 DFLSIWLCHEKNL-ESFSPHTFMIYFS-------------IFFSIFIATVIFIANIFLFY 52 F ++ LCH+ L S SP T + Y ++ ++ ATVI +L Sbjct: 111 QFFTLMLCHDGYLIGSISPATMVGYVGTIGVGLVLFDRKIVYSALVPATVILTVCTYLSM 170 Query: 53 IGLTPFYGLEYILV----ENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQL 103 G P+ L ++ + + S+ ++ ++ IL E+ ++ R I +L Sbjct: 171 KGTLPYAPLFNLIAMQRAQTNPFWLGSMAFFIMPILLACFILFEILLTQWRQRETYIQRL 230 Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 S++D L+ +LN + + L S +++ ++V DID+FK+IND +GH GD+V+ ++ Sbjct: 231 SQLDPLTNVLNRRSLNTHLESLHQQQFDYAVVLLDIDHFKKINDIYGHHQGDQVLIEIAQ 290 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L + +GR GGEEF + +A +A R +E + + IHI+ Sbjct: 291 CLSKNLRSEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRHALEELPVFSTQNNPIHISA 350 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 S GI+ + +I +ADQALY K SGRN+V F E Sbjct: 351 SFGISSSAFAKDPYLVIRQADQALYAVKASGRNQVRTFHQTE 392 >gi|209885029|ref|YP_002288886.1| ggdef domain [Oligotropha carboxidovorans OM5] gi|209873225|gb|ACI93021.1| ggdef domain [Oligotropha carboxidovorans OM5] Length = 414 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 9/157 (5%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+GLLN F I ++ + FDID+FK +ND +GH GD V+ Sbjct: 225 IDPLTGLLNRRGFREATTRMIEREAKAGRPITAMIFDIDHFKAVNDTYGHATGDDVLRVF 284 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ V +GR+GGEEF AA L +EA + A +R E + I + P + Sbjct: 285 ANVAVGALRVTDLLGRVGGEEF-AALLPCGMEEALVAAERVRDAFEQAGIAVDGAP-LAT 342 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+A + ++ AD ALY AK+ GRNRV Sbjct: 343 TVSIGVAGGPASTELDVLLASADTALYRAKRGGRNRV 379 >gi|221065824|ref|ZP_03541929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Comamonas testosteroni KF-1] gi|220710847|gb|EED66215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Comamonas testosteroni KF-1] Length = 868 Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 15/180 (8%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 +S RI QL+ D L+GL N S I+S +++ +L+++F D+D FKQ+ND+ G Sbjct: 421 LSRARIRQLAFYDGLTGLPNRSLLQAKADQAIASAATHDAQLAVLFIDLDRFKQVNDSLG 480 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--N 205 HPVGD+++ ++ +L V + GRL G+EF A +A +AN + ++ E Sbjct: 481 HPVGDELLRSVAARLQRVLRSSDIAGRLSGDEFVAVL---PHCDAEYVANTIERLQELLA 537 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 +NI+ S+ I+ S GIA + T+++RAD A+Y AK GR R CF E N Sbjct: 538 EPLNIAD-TSLAISASIGIAMFPSDGRDMETLVHRADMAMYQAKSKGRGR-FCFFSSEMN 595 >gi|323493890|ref|ZP_08099007.1| sensory box/GGDEF family protein-like protein [Vibrio brasiliensis LMG 20546] gi|323311831|gb|EGA64978.1| sensory box/GGDEF family protein-like protein [Vibrio brasiliensis LMG 20546] Length = 633 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 18/170 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGH 148 NR+ +LS D ++ L N F + + S NE ++ DID+FK+IND +GH Sbjct: 464 NRLRELSEKDAMTSLWNRRKFDAEMQSQVQRTKRYKQNEVTALALIDIDHFKRINDTYGH 523 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+VI +++ L + R+GGEEFA ++ EA ++ N LR + I Sbjct: 524 DRGDEVIKAVANSLTHHLRETDIIARIGGEEFAIIMPHTALAEAEVVVNRLR-----TAI 578 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 N+ S ++IT+SAGI E RAD ALY +K SGRN+V F Sbjct: 579 NLES--DLNITVSAGITELSSSS--EQTYKRADIALYESKSSGRNQVSVF 624 >gi|295700625|ref|YP_003608518.1| diguanylate cyclase [Burkholderia sp. CCGE1002] gi|295439838|gb|ADG19007.1| diguanylate cyclase [Burkholderia sp. CCGE1002] Length = 241 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 89/169 (52%), Gaps = 8/169 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF--FDIDYFKQINDNFGH 148 +E+ + +++ + D L+G+LN SA I S V DID FK+IND++GH Sbjct: 72 REMQVLAQQLAYRASHDALTGVLNRSAVIERTTKVLRTSSAVMIILDIDEFKRINDDYGH 131 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 P GD VI+ + D L + G F+GR+GGEEF G AILA +R+ I +S + Sbjct: 132 PTGDAVISGVVDCLRRIVGEQGFIGRVGGEEFTVLLPGHEPASGAILAERMREAISDSLV 191 Query: 209 NISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + IT S G++ T AD ALY AK+SGRNRV Sbjct: 192 V----PPVERRITASFGVSINAVGTCFDTAYGLADAALYRAKRSGRNRV 236 >gi|254492479|ref|ZP_05105651.1| GGDEF domain protein [Methylophaga thiooxidans DMS010] gi|224462371|gb|EEF78648.1| GGDEF domain protein [Methylophaga thiooxydans DMS010] Length = 345 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 12/166 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ D L+GL N AF + + + I+F D+D FK++ND GH VGD+V+ Sbjct: 177 AKTDTLTGLANRKAFDELVTKVTQDADNSGLDVCILFCDLDIFKEVNDKHGHLVGDQVLK 236 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +S+ L V R GGEEF+ L +S Q A ILA+++RK I + +I Sbjct: 237 VVSNTLKDSVKGRDLVARYGGEEFSIILLNTSLQNAKILADNIRKEIASKRIQRKDTRES 296 Query: 217 --HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 IT+S G+A E + + + RAD+ALY++K+ GRN C S+ Sbjct: 297 LGQITMSFGVARYVPTEGVESFMQRADRALYMSKRKGRN---CVSE 339 >gi|254250546|ref|ZP_04943865.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] gi|124879680|gb|EAY67036.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] Length = 502 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 11/179 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQ 141 L++ F ++ L+R D L+GL N A ++L E+L S++F D D+FKQ Sbjct: 318 LRDNFRKQTLLTDLTRTDPLTGLRNRRALDTALADEWERLQRGSGGSLSVLFIDADHFKQ 377 Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND GH GD + FL++ + R GGEEF A + E AA +A +R Sbjct: 378 YNDQHGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDENGAAQVAEAIR 437 Query: 201 KIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +E +++ + P ++I R + + ++AD ALY AK+ GRNRV C Sbjct: 438 REVEGNRLVGFAETVPPFTVSIGCATGRRARHASMLALSHQADMALYRAKREGRNRVCC 496 >gi|94312156|ref|YP_585366.1| diguanylate cyclase [Cupriavidus metallidurans CH34] gi|93356008|gb|ABF10097.1| conserved hypothetical protein; GGDEF-family protein [Cupriavidus metallidurans CH34] Length = 599 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 124/255 (48%), Gaps = 34/255 (13%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE----NLSLVIISIT-----ISLL 81 F+I F++ + T+I++ ++F I L PF+ ++ NLS+ + S I L Sbjct: 340 FAIAFAL-LGTMIWLHSLFRRQI-LKPFFAATRSILAIANGNLSVRVPSPNNYRGEIRAL 397 Query: 82 LGYISGSILKELFISYNRISQ-----------LSRIDCLSGLLNHSAF-------ISSLG 123 L + LK + ++ Q ++ D L+ LLN A +S Sbjct: 398 LEAVH--TLKRYSLDKQQLEQDRQRLIAQLTTMAETDALTQLLNRRALEARACDLCASPA 455 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + +++V FDID+FK+IND +GH GD+ + + V GT R GGEEFA Sbjct: 456 ADKPYVALVMFDIDHFKRINDTYGHIAGDRALEIVGAVCREVLGTGDLAARFGGEEFAVV 515 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRA 240 +L S+ EA LA L++ + ++ + S +T+S G+A + +S +I +A Sbjct: 516 SLVSTPGEALRLAEQLKEKLREIRVTLESARPFGMTVSLGVAIGRREDVGQDLSALIRQA 575 Query: 241 DQALYVAKKSGRNRV 255 D LY AK+ GRNR+ Sbjct: 576 DLMLYRAKRGGRNRI 590 >gi|186472966|ref|YP_001860308.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum STM815] gi|184195298|gb|ACC73262.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum STM815] Length = 312 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 9/168 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + + D L+G+ N F + L Y +LSI+ FD+D+FK+IND FGH VG Sbjct: 145 KLQEYADRDGLTGIANRRYFEARLRDEYTRWQRYGGELSILLFDLDHFKKINDQFGHVVG 204 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ ++ V GR GGEEFA + ++A ++A +R I + +++ Sbjct: 205 DTVLREMAQRVAHVVRAQDTFGRFGGEEFALLLPCTPLEDAMLVAEKIRNTIGDRPVDV- 263 Query: 212 SGPSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G ++ +T S G A R +I AD ALY AK+ GRNR V F Sbjct: 264 QGVNVPVTASVGGAAARAGVPAYEALINEADAALYSAKRQGRNRSVAF 311 >gi|189425170|ref|YP_001952347.1| diguanylate cyclase [Geobacter lovleyi SZ] gi|189421429|gb|ACD95827.1| diguanylate cyclase [Geobacter lovleyi SZ] Length = 392 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 8/165 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ + R D L+GL N ++ L +N+ S++ D+D FKQ+ND FGH G Sbjct: 220 RLELMVRTDILTGLANRMEMLNQLEVELKRSERHNKTFSLILGDLDLFKQVNDTFGHLAG 279 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ + QL + R GGEEF +S ++A I+A L + +I Sbjct: 280 DRVLRQIGTQLKDNLRSEDVCARWGGEEFMVLLPETSLEQAVIVAEKLAAAVRGKEIVWD 339 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + P IH+T+S G+ C I I + D ALY AK +GR+RVV Sbjct: 340 TQP-IHLTMSFGVGAFCAGCSIDEFIQQVDNALYAAKNAGRDRVV 383 >gi|78484435|ref|YP_390360.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78362721|gb|ABB40686.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Thiomicrospira crunogena XCL-2] Length = 420 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 25/187 (13%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 +G + E ++ L+ D L+G+ N + + Y + ++ FD+DY Sbjct: 245 TGKDVSEQVKMQQELNDLAMKDALTGIWNRRHLTDVVNTEMKRVNRYGGRFGMIMFDVDY 304 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FKQIND+FGH +GD+ + ++ + + ++GR GGEEF AL A LA Sbjct: 305 FKQINDDFGHDIGDETLVQIAKIVQKIVRETDYIGRWGGEEFLLIALELDASLTAKLAEK 364 Query: 199 LRKIIEN------SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251 +R+ IE Q+ +S G +++ HK E + + RAD+ALY+AK+ G Sbjct: 365 IREAIEEFVFPKVGQVTVSLGATVY-----------HKNETEAQLFKRADEALYLAKRHG 413 Query: 252 RNRVVCF 258 RNRV + Sbjct: 414 RNRVEVY 420 >gi|300690033|ref|YP_003751028.1| diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum PSI07] gi|299077093|emb|CBJ49714.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum PSI07] Length = 458 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 12/208 (5%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118 + L + + S+ + + +L+ ++ ++ + LF ++ + Q+S D L+G+ N S F Sbjct: 242 FTLGWYVARVFSMFAPGVLVCVLVWEVT-TLYRRLFEAHVSLQQMSTHDALTGIYNRSYF 300 Query: 119 ISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPM 170 L S+V D+D+FK+ ND FGH GD +A ++ L V+ Sbjct: 301 NDQLPRAFDAARRGGRPFSLVMIDVDHFKRYNDTFGHLKGDGCLAAVASALEGVMHRHAG 360 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 F+ R GGEEFA ++ ++A +LA R+ + +I + PS ++TISAG A + Sbjct: 361 FIARYGGEEFAVVLPDATPRDALLLAESAREAVLRLRIE-APAPSRYVTISAGCATAAPE 419 Query: 231 EPIS--TIIYRADQALYVAKKSGRNRVV 256 P S ++ AD LY AK +GRN VV Sbjct: 420 SPASLEALVEAADATLYRAKAAGRNLVV 447 >gi|34556779|ref|NP_906594.1| GGDEF domain protein [Wolinella succinogenes DSM 1740] gi|34482493|emb|CAE09494.1| GGDEF DOMAIN PROTEIN [Wolinella succinogenes] Length = 436 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 7/161 (4%) Query: 98 NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ + + D L+G+ N + + +E ++FFDID+FKQIND +GH GD++ Sbjct: 275 KKLQRQATTDTLTGIDNRFRLQEILEEWKARDESYGVIFFDIDHFKQINDEYGHDKGDEI 334 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L+ + RLGGEEF G+S +A +A LR+ IE + Sbjct: 335 LVGLARLIKTELRDEDIFARLGGEEFVVLLKGASLPKATEIAQRLRQAIEQHPFPMQR-- 392 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ S G+A+ +E I RAD A+Y+AK++GRNRV Sbjct: 393 --RVSCSFGVAKNQFREEPEETIKRADLAMYLAKRAGRNRV 431 >gi|157369436|ref|YP_001477425.1| diguanylate cyclase [Serratia proteamaculans 568] gi|157321200|gb|ABV40297.1| diguanylate cyclase [Serratia proteamaculans 568] Length = 353 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 14/186 (7%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132 +LLG ++ K L + ++S D L+GL N + S Y +++ Sbjct: 165 ILLGLVTYRTAKRLAEKKQELLRISMRDGLTGLYNRRHWEHLLHHQFDSCRRYQHSATLI 224 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK IND FGH +GD+ +A L+++L++ VGR GG+EF A +S ++A Sbjct: 225 LMDIDHFKTINDTFGHALGDEALAVLAEELLIGLRAVDIVGRYGGDEFGAVLPNTSAEQA 284 Query: 193 AILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKK 249 +I L +I E ++I P + + ISAGIA+ H + + + AD ALY AK Sbjct: 285 SI---ALLRIQERLNEIVFREAPQLRLNISAGIAD-YHGDMSGYLDWLKAADNALYRAKN 340 Query: 250 SGRNRV 255 +GRNR+ Sbjct: 341 NGRNRL 346 >gi|149174472|ref|ZP_01853098.1| GAF domain/GGDEF domain protein [Planctomyces maris DSM 8797] gi|148846582|gb|EDL60919.1| GAF domain/GGDEF domain protein [Planctomyces maris DSM 8797] Length = 503 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 13/170 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + RI +++ D L+GL NH+ F ++ + + +LSI+ DID+FK ND +GH Sbjct: 325 FKRIEEMASRDGLTGLFNHATFQEKLHELVTQADAQSSQLSIIMSDIDHFKSFNDTYGHQ 384 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ V + R GGEEF L +A +A DLR+ + N I Sbjct: 385 AGDFVLKEVARIWKTVMPEKAIIARYGGEEFIGVLLDHEYSQAMQIAEDLRETLVNCPI- 443 Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 + G + +T S G+ E K P +T ++ AD+ LY AK+SGRN+VV Sbjct: 444 LFEGQQLQVTASFGVTE--FKYPATTTNELVRIADENLYKAKESGRNQVV 491 >gi|107029170|ref|YP_626265.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] gi|116687041|ref|YP_840288.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] gi|105898334|gb|ABF81292.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] gi|116652756|gb|ABK13395.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] Length = 502 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 11/179 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQ 141 L++ F ++ L+R D L+GL N A ++L E+L S++F D D+FKQ Sbjct: 318 LRDNFRKQTLLTDLTRTDPLTGLRNRRALDTALADEWERLQRGSGGSLSVLFIDADHFKQ 377 Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND GH GD + FL++ + R GGEEF A + E AA +A +R Sbjct: 378 YNDQHGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDENGAAQVAEAIR 437 Query: 201 KIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +E +++ + P ++I R + + ++AD ALY AK+ GRNRV C Sbjct: 438 REVEGNRLVGFAETVPPFTVSIGCATGRRARHASMLALSHQADMALYRAKREGRNRVCC 496 >gi|296125463|ref|YP_003632715.1| diguanylate cyclase [Brachyspira murdochii DSM 12563] gi|296017279|gb|ADG70516.1| diguanylate cyclase [Brachyspira murdochii DSM 12563] Length = 342 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 17/187 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 ++K+L + + S ID L+GL N F + Y +SI+F D+D+ Sbjct: 155 KDKVIKKLMKEIDTLHAQSTIDPLTGLFNVRYFNKVIEEEVDRAKRYKYSISIIFMDLDH 214 Query: 139 FKQINDNFGHPVGD-------KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 FK IND +GH G+ K+++ SD + + R GGEEF + +++ Sbjct: 215 FKDINDIYGHDCGNLVLHEIGKLLSNASDNNIHMLRKSDVAIRYGGEEFIVICPNTKKEQ 274 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKK 249 A I+A +RK +E + N S I++T+S GIAE K+PI+ I AD A+Y AK Sbjct: 275 AYIVAERIRKTVEKKRFNYES-TIINVTVSVGIAEHKGTSKKPIAETIKNADSAMYEAKH 333 Query: 250 SGRNRVV 256 GRN+V+ Sbjct: 334 LGRNKVI 340 >gi|330501090|ref|YP_004377959.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328915376|gb|AEB56207.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 618 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q S +D L+GL N +A+ I+ Y +L + DID+FK+IND +GH GD+V Sbjct: 456 QKSLLDPLTGLPNRAAWSERLDLEIARRQRYGGQLLMAVLDIDHFKRINDGYGHLAGDRV 515 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ +L F+ R GGEEF G+ L LR +E + P Sbjct: 516 LKIIAGELHKRLRKTDFIARFGGEEFVLLIPGTPLDGGVQLLETLRAAVEACPFHFKGEP 575 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+SAGIAE + E RADQALY AK +GRNRV Sbjct: 576 -VTITLSAGIAEFRNDEATEDTFERADQALYRAKGAGRNRV 615 >gi|283853734|ref|ZP_06370962.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] gi|283570884|gb|EFC18916.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] Length = 398 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 14/182 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133 +L S + EL + + + L+ D L+GL N F+ G ++ +S+V Sbjct: 212 ILAMTSSRVEAELGEARDELRHLAETDGLTGLPNRRHFLRLAGEALDRAREQGFGVSLVM 271 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D FK +ND GH GD+V+ + L P VGRLGGEEF G S A Sbjct: 272 LDLDNFKTVNDTHGHQTGDRVLMGVGRCLAGALPAPGRVGRLGGEEFGVLLPGVSGPAAV 331 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +A LR+ +E + + + +T S G+AE + + ++ AD+ LY AK++GRN Sbjct: 332 AMAERLRRSLEALRPD-----GLAVTASFGVAE--GDKDVDALLALADECLYAAKRAGRN 384 Query: 254 RV 255 RV Sbjct: 385 RV 386 >gi|222147420|ref|YP_002548377.1| GGDEF family protein [Agrobacterium vitis S4] gi|221734410|gb|ACM35373.1| GGDEF family protein [Agrobacterium vitis S4] Length = 391 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 9/187 (4%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAFISSLGS--YNEKL 129 I +++ + +SG L + RI+ R+ D L+GL N A ++ G+ ++E + Sbjct: 189 INMAVCIAGMSGIGALSLTLHQTRITARHRLEAMTDALTGLCNRRALFNAHGTKTFHEDM 248 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ FDID FK IND +GH VGD+VI ++ +L G V RLGGEEFAA ++ Sbjct: 249 AMLVFDIDRFKAINDRYGHAVGDEVIRNIAAELKAAIGLSS-VTRLGGEEFAAVLENAAP 307 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAK 248 A + +R+ +++ ++ + G S T S GIA I+ AD ALY AK Sbjct: 308 GRAEWIGERIRRQLQDREV-VVDGDSFVATTSVGIAYGTASGLTFDEILNLADNALYNAK 366 Query: 249 KSGRNRV 255 + GRNRV Sbjct: 367 RLGRNRV 373 >gi|327398500|ref|YP_004339369.1| response regulator receiver modulated diguanylate cyclase [Hippea maritima DSM 10411] gi|327181129|gb|AEA33310.1| response regulator receiver modulated diguanylate cyclase [Hippea maritima DSM 10411] Length = 429 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 3/143 (2%) Query: 113 LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 L H A +S E LS + DID FK +ND +GH GD+V+ +++ + Sbjct: 279 LQHHAQLSKRNG--EALSFLMIDIDKFKTVNDTYGHQSGDEVLKEMANIIKENIRKSDIA 336 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232 R GGEEF+ + S Q+A +A +R E + I+I+ G IHITIS G++ K+ Sbjct: 337 CRFGGEEFSVLLINISPQDACSVAEKIRNATEKTAISIN-GQDIHITISIGVSSLTDKDD 395 Query: 233 ISTIIYRADQALYVAKKSGRNRV 255 I++ I +AD ALY AK++GRNR+ Sbjct: 396 INSFIKKADDALYKAKEAGRNRI 418 >gi|299132554|ref|ZP_07025749.1| diguanylate cyclase [Afipia sp. 1NLS2] gi|298592691|gb|EFI52891.1| diguanylate cyclase [Afipia sp. 1NLS2] Length = 407 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 22/233 (9%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK------- 91 +AT++F+ + TP L SL + +I G I S+ + Sbjct: 180 VATILFVLKTTIAVPLTTPAEWLA-----GTSLFVTTIGQCAYFGVIGNSVNRKLHQRTV 234 Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL +Y +I +L+++D L+G+ N S I+ + S+ D+D+FK+IND Sbjct: 235 ELKAAYQQIEELAQLDELTGVRNRRNILKCLSEEIARVQRTKASCSLAVIDLDFFKKIND 294 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGHP GD+ + + + +GR GGEEF +++ EA + + LR II Sbjct: 295 QFGHPAGDEALRTFAIAIFANIRAIDRLGRYGGEEFLLVLPDTAQDEAVRMLDRLRSII- 353 Query: 205 NSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+++ S+ + +T+SAGI + I+ RAD ALY AK +GRN VV Sbjct: 354 -SEVDWSAISEDLRLTMSAGICSIRPTDSTDEILSRADAALYQAKDAGRNCVV 405 >gi|317052702|ref|YP_004113818.1| diguanylate cyclase [Desulfurispirillum indicum S5] gi|316947786|gb|ADU67262.1| diguanylate cyclase [Desulfurispirillum indicum S5] Length = 423 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 11/156 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N F Y + L+ V FDID+FKQ+ND GH VGD V+ L+ Sbjct: 257 DMLTGCYNRRKFEDIFRVETERARRYRQPLAAVLFDIDHFKQVNDTHGHNVGDDVLRTLA 316 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + ++ R GGEEF A ++ ++ LA +R++IE S+ +T Sbjct: 317 ALVRGSLRPSDYLVRWGGEEFLVLATETNARQGGHLAQRIRRLIERSEFAAVGT----VT 372 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS G+ E + + T I RAD ALY+AK GRNRV Sbjct: 373 ISLGVTEFVSDDELHTFIKRADDALYLAKNKGRNRV 408 >gi|268679838|ref|YP_003304269.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268617869|gb|ACZ12234.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 381 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 85/166 (51%), Gaps = 12/166 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 + L++ D L+ L N F++ Y L DID+FK+IND GHPV Sbjct: 215 EELQHLAQTDILTSLFNRRHFLTLAQQEIIKALRYEHSLCFAVLDIDFFKRINDTLGHPV 274 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V++ L+ L V R+GGEEFA L +E++A LR+ I I Sbjct: 275 GDIVVSTLARHLKHSIRQSDIVARIGGEEFAFLLLHVNEEQARAKMERLRQEISECIIEY 334 Query: 211 SSGPSIHITISAGIAERCHKEPISTI--IY-RADQALYVAKKSGRN 253 ++ +T+S G+A + PI T+ +Y +ADQ LY AKK+GRN Sbjct: 335 GVDKTLSVTVSIGLA--MLQPPIQTLDELYMKADQKLYEAKKAGRN 378 >gi|325275282|ref|ZP_08141238.1| diguanylate cyclase [Pseudomonas sp. TJI-51] gi|324099590|gb|EGB97480.1| diguanylate cyclase [Pseudomonas sp. TJI-51] Length = 358 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 16/230 (6%) Query: 37 IFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96 + V +A I + + L P L ++ + + + L LG++ + +L Sbjct: 118 VLKGAVAQLAGILVGTLLLAPGLQLNATALQIYACLPMLTLYPLALGWVCYRLAIQLGDH 177 Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHP 149 R+S LS D L+GLLNH A+ L +K I DID+FK IND FGH Sbjct: 178 KRRLSALSLTDSLTGLLNHGAWKDLLLVKYQKCKQQKAHAVIALIDIDHFKTINDTFGHV 237 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---ENS 206 VGD V+ LS +L GR GG+EF G+SE +A + LR+ + N+ Sbjct: 238 VGDCVLRQLSAELRRNLRECDQAGRYGGDEFCVILPGTSEAQACQIMERLREQVSGYRNA 297 Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 Q+ P + I++S G++ E + AD+ALY AK +GR+RV Sbjct: 298 QL-----PHLRISLSIGLSPFNASLESPEHWLQEADKALYTAKHAGRDRV 342 >gi|254521278|ref|ZP_05133333.1| diguanylate cyclase [Stenotrophomonas sp. SKA14] gi|219718869|gb|EED37394.1| diguanylate cyclase [Stenotrophomonas sp. SKA14] Length = 543 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 10/203 (4%) Query: 62 EYILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 E++L + + +++T L++ Y L L + + QL+ D L+GL N A + Sbjct: 330 EWLLEYRVEALQLAVTWLLMMAAYAMNQRLGRLRQQRDELRQLAETDGLTGLPNRRAGLQ 389 Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L + L I F DID FK IND GH VGD+V+ ++ L + V Sbjct: 390 QLARHLAQVDRERGPLVIGFLDIDLFKDINDRHGHAVGDQVLVAVARALRAAVRSQDEVV 449 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEP 232 R+GGEEF G + A+ + LR+ I + + P + +T S G+A+ R ++ Sbjct: 450 RMGGEEFLLLMPGMPREAASARLDRLRQRITEAGQALQV-PGLEVTASIGLAQWRPGEDD 508 Query: 233 ISTIIYRADQALYVAKKSGRNRV 255 ++ ++ RAD A+YVAK++GRNRV Sbjct: 509 MAGLLRRADHAMYVAKRAGRNRV 531 >gi|94496634|ref|ZP_01303210.1| diguanylate cyclase [Sphingomonas sp. SKA58] gi|94423994|gb|EAT09019.1| diguanylate cyclase [Sphingomonas sp. SKA58] Length = 389 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 117/258 (45%), Gaps = 18/258 (6%) Query: 16 EKNLESFSP--HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI 73 E+NL+ F+ H + + +A++ L GL +VE Sbjct: 139 EENLDQFTGLMHESRKSAKDYGAALQEQAKDLADVAEGEPVLARLVGLTRSMVEKTR--- 195 Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126 ++ L LK + R ++ D L+GL N AF ++ + + Sbjct: 196 -AVETQLRENQKQTQALKSSLETARRAAEQ---DHLTGLPNRRAFEARLRDEVAEAQAAD 251 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 E LSI F DID+FK IND GH GD+V+ F++ L V V R GGEEF G Sbjct: 252 ESLSIAFCDIDHFKVINDTHGHDTGDRVLKFVAGLLAKVSDDRCHVARHGGEEFVMLFRG 311 Query: 187 SSEQEAAILANDLRK-IIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQAL 244 + E +D+R+ + S +N ++G + ++ SAG+A + + AD+AL Sbjct: 312 KTAAETCEAVDDVREDLASRSLVNRTNGERMDRVSFSAGVANVLAYDDPRAALKAADRAL 371 Query: 245 YVAKKSGRNRVVCFSDIE 262 Y+AK+ GRNRV ++ E Sbjct: 372 YLAKEHGRNRVYLAAETE 389 >gi|83310444|ref|YP_420708.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945285|dbj|BAE50149.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 498 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 14/186 (7%) Query: 90 LKELFISYNRISQLSR---IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139 L+ + + +L R D L+G+ N +S Y L++ DID+F Sbjct: 314 LRSYLTTVRQREELRRQADTDPLTGVPNRRHLMSVAEHELARTLRYGGALALFMVDIDHF 373 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K IND +GHP GD+VI L+ + GRLGGEEFAA + + AAI+A L Sbjct: 374 KAINDTWGHPTGDRVIQVLAAAMAASAREQDTAGRLGGEEFAAVLPETDLEGAAIMAERL 433 Query: 200 RKIIE--NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 R+ +E S ++ G + T+S G+A + + I+ RAD+ALY AK GRNRV Sbjct: 434 REAVEAITSALD-DQGQPVRFTVSIGVAAIQLGDGSVEDILGRADRALYAAKHGGRNRVE 492 Query: 257 CFSDIE 262 + E Sbjct: 493 MAATAE 498 >gi|118581762|ref|YP_903012.1| diguanylate cyclase [Pelobacter propionicus DSM 2379] gi|118504472|gb|ABL00955.1| diguanylate cyclase [Pelobacter propionicus DSM 2379] Length = 380 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 10/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I +RID L+G+ N F + + +S DID+FKQIND +GHP GD Sbjct: 206 IEHTARIDTLTGIANRFHFSEAAPVLLELCRRHEHPISAFMVDIDHFKQINDRYGHPEGD 265 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI ++D + + R GGEEF + A +A +R+ I + + + Sbjct: 266 EVIRLVADSMRTKLRNTDLLARYGGEEFVVILPETPPHAAVGVAESVRRTIAEKALALGA 325 Query: 213 GPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G SI ITIS G+A + ++ +AD LY AK+ GRNRVV Sbjct: 326 GRSIRITISIGVAGYDLLPDDIGLEELLKQADTRLYEAKEGGRNRVVA 373 >gi|89092689|ref|ZP_01165642.1| methyl-accepting chemotaxis protein-like [Oceanospirillum sp. MED92] gi|89083201|gb|EAR62420.1| methyl-accepting chemotaxis protein-like [Oceanospirillum sp. MED92] Length = 385 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 103/189 (54%), Gaps = 7/189 (3%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI 131 V+I IS+++ S S ++ + I + ++QL L+ + + +N L I Sbjct: 201 VLIMTIISVVMAKRSTSTIRNMAIR-DPLTQLYTRRYLNESEDSFVREDNRNQFNH-LYI 258 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 VF DID+FKQ+ND +GH VGD+V++ + + L R GGEEF L +S++ Sbjct: 259 VFLDIDFFKQVNDTYGHMVGDQVLSKVGEVLRTHTRAQDLCVRYGGEEFVVMTLANSDEP 318 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 L LRK ++ + G IT+SAGIA R E + ++ RADQ LY AK++G Sbjct: 319 VLKLTERLRK--HTHELTFAEGQ--QITLSAGIARREVDESFAHVLQRADQNLYEAKQTG 374 Query: 252 RNRVVCFSD 260 R+R++ F+D Sbjct: 375 RDRII-FND 382 >gi|312142594|ref|YP_003994040.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus'] gi|311903245|gb|ADQ13686.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus'] Length = 316 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 16/167 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I +L + D L+GL N F I++ ++ LS+V D+D+FK+INDN+GH G Sbjct: 153 KIEELLKTDKLTGLSNRRHFMEYFEKMIANAKRHSLSLSLVMCDLDHFKKINDNYGHGAG 212 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---SQI 208 D+V+ + + L+ R+GGEEF G+S +E A +RK + N ++I Sbjct: 213 DRVLEEVGELLLNETRQGDLASRIGGEEFTIILNGTSLKEGKNYAERIRKKVSNLEFAEI 272 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 N +TIS GI E ++ + + RAD+ALY AK +GRNRV Sbjct: 273 NKK------VTISMGITEIQAEDNAESFLKRADRALYKAKNNGRNRV 313 >gi|168186514|ref|ZP_02621149.1| putative ggdef domain protein [Clostridium botulinum C str. Eklund] gi|169295530|gb|EDS77663.1| putative ggdef domain protein [Clostridium botulinum C str. Eklund] Length = 1801 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 4/130 (3%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N+K SI+ FD+D FK +ND FGH VGDKV+ + + ++ GR GGEEF A Sbjct: 1494 NDKFSIIMFDLDNFKNVNDTFGHQVGDKVLNNVCNIVMKNLREGDICGRYGGEEFIAILP 1553 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQAL 244 E EA +A +R +ENS+I P +TIS GI+ + + +I +ADQAL Sbjct: 1554 RIGENEALNIAERIRVAVENSEILGEKNP---VTISIGISTYPKQAQLKRELIEKADQAL 1610 Query: 245 YVAKKSGRNR 254 Y+AK SGRNR Sbjct: 1611 YMAKDSGRNR 1620 >gi|127513951|ref|YP_001095148.1| diguanylate cyclase [Shewanella loihica PV-4] gi|126639246|gb|ABO24889.1| diguanylate cyclase [Shewanella loihica PV-4] Length = 362 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 15/198 (7%) Query: 70 SLVIISITISLLLGYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125 +++ +SI LL + G S ++L +I +L+ D L+GL N +L Y Sbjct: 158 NVIEVSIAHILLFRFYEGTRSSAYRQLGERNAKIQKLAETDKLTGLYNREKLDITLEEYV 217 Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 S++ D+DYFKQIND GH GD+V+ L+D L + F+ R GGEE Sbjct: 218 LQSRHRQTPFSLLILDVDYFKQINDAHGHLTGDRVLVQLADSLRSLCREGDFLARWGGEE 277 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F + +A LR+ I + + S +TIS G A+ + T++ R Sbjct: 278 FVILLPETQLSICVAVAEQLRQDIAAQKFDGQS-----LTISLGAAQLREDDTTKTLVNR 332 Query: 240 ADQALYVAKKSGRNRVVC 257 AD ALY AK +GRNRVV Sbjct: 333 ADNALYQAKHTGRNRVVA 350 >gi|167628686|ref|YP_001679185.1| two component diguanylate cyclase [Heliobacterium modesticaldum Ice1] gi|167591426|gb|ABZ83174.1| two component diguanylate cyclase [Heliobacterium modesticaldum Ice1] Length = 324 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 98/186 (52%), Gaps = 16/186 (8%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141 + EL + ++ LS +D L+GL N F L S ++ +S++ FDID+FK Sbjct: 138 VTAELEEAVRKLQNLSSLDGLTGLANRRRFDEYLASEWKRAIRNGTPISLILFDIDWFKP 197 Query: 142 INDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 ND +GH GD K IA L + VV + V R GGEEFA +S++ A +A Sbjct: 198 YNDTYGHIQGDDCLKAIASLMPK--VVRRSSDLVCRYGGEEFAVILPDTSQEGALAVAES 255 Query: 199 LRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R+ + + I P +T+S G+A EP++ I Y AD+ALY AK+ GRNR Sbjct: 256 IREALSEAGIEHRQSPLDRVTVSVGVATAYPSPSSEPVTLIGY-ADEALYEAKRQGRNRT 314 Query: 256 VCFSDI 261 V ++I Sbjct: 315 VENAEI 320 >gi|320324986|gb|EFW81058.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. glycinea str. B076] gi|320329140|gb|EFW85138.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 796 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%) Query: 85 ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129 + GS+L F+S R+ Q LS D L+G N F + + + L Sbjct: 609 VDGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 668 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 SI+ DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ Sbjct: 669 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 728 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +A LA LR+ + N I G +T S GIA E I T++ RAD +Y AK+ Sbjct: 729 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 785 Query: 250 SGRNRV 255 +GR+RV Sbjct: 786 AGRDRV 791 >gi|298486599|ref|ZP_07004657.1| predicted CHASE domain/sensory box-containing nucleotide cyclase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158814|gb|EFH99876.1| predicted CHASE domain/sensory box-containing nucleotide cyclase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 796 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%) Query: 85 ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129 + GS+L F+S R+ Q LS D L+G N F + + + L Sbjct: 609 VDGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 668 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 SI+ DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ Sbjct: 669 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 728 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +A LA LR+ + N I G +T S GIA E I T++ RAD +Y AK+ Sbjct: 729 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 785 Query: 250 SGRNRV 255 +GR+RV Sbjct: 786 AGRDRV 791 >gi|239908299|ref|YP_002955040.1| putative signaling protein [Desulfovibrio magneticus RS-1] gi|239798165|dbj|BAH77154.1| putative signaling protein [Desulfovibrio magneticus RS-1] Length = 853 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 11/163 (6%) Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+G+ N A +SS YN + S+ FDID FK +ND +GH GD V+ Sbjct: 668 LATKDGLTGVSNRHHFMEISGALLSSATRYNTEFSVAIFDIDNFKTVNDTWGHSAGDMVL 727 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + F + +GRLGGEEFA + +S + AA R I+E++ P Sbjct: 728 KKICTLATTEFRSSDIIGRLGGEEFAISMPETSLENAAAAVERFRTIVESTIFEYDEIP- 786 Query: 216 IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 I+ITIS+G+A C H + I +++ AD LY AK+ GRN+ V Sbjct: 787 INITISSGVAA-CSKHIKTIDSLLKSADNFLYKAKRHGRNQTV 828 >gi|157369424|ref|YP_001477413.1| diguanylate cyclase [Serratia proteamaculans 568] gi|157321188|gb|ABV40285.1| diguanylate cyclase [Serratia proteamaculans 568] Length = 482 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 9/177 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ + D L+G+L +A G E +S++ DID+FKQIND GH VG Sbjct: 300 RLEHSANHDFLTGVLARNALTRKAGELLEHKHKSKEAVSLLLIDIDHFKQINDTHGHLVG 359 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+A + + GRLGGEEFA + + LA LR++++ + + + Sbjct: 360 DQVLASFAHIVRRELRHDQLFGRLGGEEFAIMLPRALAAQGVALAEHLRQLVQKADLLPT 419 Query: 212 SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 ++ITIS G+A E + ++ AD ALY AK GRNRV F+ + N+ Sbjct: 420 GKVPLNITISVGVASLGMNEVKSLEQLMNMADIALYRAKSQGRNRVESFNAVSGNSV 476 >gi|304391262|ref|ZP_07373206.1| diguanylate cyclase [Ahrensia sp. R2A130] gi|303296618|gb|EFL90974.1| diguanylate cyclase [Ahrensia sp. R2A130] Length = 398 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 8/163 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGHPVGDKV 154 +R S ID L+GL N F K V+ D+D+FK++ND GHPVGD V Sbjct: 216 DRARMASFIDPLTGLYNRRGFEELSAKIEAKPGTVWIAIGDLDHFKRLNDRHGHPVGDAV 275 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQIN-ISS 212 + ++D L + V R GGEEF A +G+SE EA N LR+ + +N +S Sbjct: 276 LKGVADILSDGTRSNDLVCRFGGEEFLVALVGTSEAEAVNAMNRLREAVSFQGHVNDLSP 335 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G ++++ G+A EP+ + RAD+ALY K +GRNRV Sbjct: 336 G---EVSMTFGLACWMPGEPVLEVYRRADRALYSGKNNGRNRV 375 >gi|257486238|ref|ZP_05640279.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 796 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%) Query: 85 ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129 + GS+L F+S R+ Q LS D L+G N F + + + L Sbjct: 609 VDGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 668 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 SI+ DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ Sbjct: 669 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 728 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +A LA LR+ + N I G +T S GIA E I T++ RAD +Y AK+ Sbjct: 729 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 785 Query: 250 SGRNRV 255 +GR+RV Sbjct: 786 AGRDRV 791 >gi|330988388|gb|EGH86491.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 796 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%) Query: 85 ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129 + GS+L F+S R+ Q LS D L+G N F + + + L Sbjct: 609 VDGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 668 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 SI+ DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ Sbjct: 669 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 728 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +A LA LR+ + N I G +T S GIA E I T++ RAD +Y AK+ Sbjct: 729 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 785 Query: 250 SGRNRV 255 +GR+RV Sbjct: 786 AGRDRV 791 >gi|308050982|ref|YP_003914548.1| diguanylate cyclase with PAS/PAC sensor [Ferrimonas balearica DSM 9799] gi|307633172|gb|ADN77474.1| diguanylate cyclase with PAS/PAC sensor [Ferrimonas balearica DSM 9799] Length = 314 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 109/215 (50%), Gaps = 18/215 (8%) Query: 57 PFYGLEYILVENLSLVIIS-----ITISLLLGY---ISGSILKELFISYNRISQLSRIDC 108 P G ++ +N+++ + ++ + L+ Y + + ++L + ++ +LS+ID Sbjct: 99 PITGGNQMMCQNMTVQPLQDLRGEVSHAALILYDVSVQAADRRQLTDANEKLERLSQIDP 158 Query: 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+GL N + +L Y ++ D+D+FKQ+ND GH VGD+V+ L + Sbjct: 159 LTGLANRRQWEQALEQEFQRCRRYQPPSCLLVVDVDHFKQVNDQHGHAVGDQVLNELGNL 218 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L V R GGEEF + ++ ILA LR+ +E + + S++IT+S Sbjct: 219 LARSLRKTDLVARYGGEEFVILLTETRPEQGRILAERLREAVEEMVMKVPQ--SLNITVS 276 Query: 222 AGIAERCHKEPISTIIY-RADQALYVAKKSGRNRV 255 G+ H + + AD+ALY AK++GRNRV Sbjct: 277 LGLCPYQHSLASAQAWFEEADRALYQAKQNGRNRV 311 >gi|170734764|ref|YP_001773878.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] gi|169820802|gb|ACA95383.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] Length = 502 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 11/179 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQ 141 L++ F ++ L+R D L+GL N A ++L E+L S++F D D+FKQ Sbjct: 318 LRDNFRKQTLLTDLTRTDPLTGLRNRRALDTALADEWERLQRGSGGSLSVLFIDADHFKQ 377 Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND GH GD + FL++ + R GGEEF A + E AA +A +R Sbjct: 378 YNDQHGHAQGDTALRFLAECIRAHTRRRGDLAARYGGEEFVAVLPDTDENGAAQVAEAIR 437 Query: 201 KIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +E +++ + P ++I R + + ++AD ALY AK+ GRNRV C Sbjct: 438 REVEGNRLVGFAETVPPFTVSIGCATGRRARHASMFALSHQADMALYRAKREGRNRVCC 496 >gi|152992796|ref|YP_001358517.1| signal transduction response regulator [Sulfurovum sp. NBC37-1] gi|151424657|dbj|BAF72160.1| signal transduction response regulator [Sulfurovum sp. NBC37-1] Length = 409 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 9/175 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQIN 143 KEL + ++ +L+ D L+ L N F S L N+ +++I+ DID FK+IN Sbjct: 232 KELNKTNEKLKKLASTDPLTELFNRRHFESLTEPFLELAKRNDTEIAIIVIDIDNFKKIN 291 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGD VI L+ L V R GGEEF ++ + +A +RK + Sbjct: 292 DTYGHKVGDDVIVDLATILKRGSRQSDIVCRWGGEEFIILLANTNGKSVLTIAEKIRKKV 351 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 EN + G + TIS G+A + I +I RAD+ALY AK SG+N+VV Sbjct: 352 ENLVRTLEDGNELKFTISCGVALVNKESNTSIHNVIDRADRALYKAKNSGKNKVV 406 >gi|307721992|ref|YP_003893132.1| diguanylate cyclase with hemerythrin-like metal-binding domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306980085|gb|ADN10120.1| diguanylate cyclase with hemerythrin-like metal-binding domain protein [Sulfurimonas autotrophica DSM 16294] Length = 725 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +++ ID L+G +N + Y LS + DID+FKQ+ND +GH VG Sbjct: 555 QLEEMAFIDPLTGAVNRRKGEELFALELERATRYKRDLSFLMLDIDHFKQVNDTYGHAVG 614 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ S + + V R+GGEEFA ++ + A A R+ I NS + I Sbjct: 615 DEVLKHFSSICLKMARHLDVVARIGGEEFAVMLPETNSEGAYEFAERFREKICNSSVIID 674 Query: 212 SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 + +I ++S GI+ + + + + TI+ RAD+ALY AKKSGRN Sbjct: 675 NTTTIKYSVSIGISSLDITYDKDVKTILERADKALYQAKKSGRN 718 >gi|299768382|ref|YP_003730408.1| GGDEF domain-containing protein [Acinetobacter sp. DR1] gi|298698470|gb|ADI89035.1| GGDEF domain-containing protein [Acinetobacter sp. DR1] Length = 360 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 135/282 (47%), Gaps = 26/282 (9%) Query: 7 DFLSIWLCHEKNL-ESFSPHTFMIYFS-------------IFFSIFIATVIFIANIFLFY 52 F ++ LCH+ L S SP T + Y ++ ++ AT+I +L Sbjct: 74 QFFTLMLCHDGYLIGSISPATMVGYVGTIGVGLVLFDRKIVYSALVPATIILTVCTYLSM 133 Query: 53 IGLTPFYGLEYILV----ENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQL 103 G+ P+ L ++ + + S+ ++ ++ IL E+ ++ R I +L Sbjct: 134 KGVLPYAPLFNLIAMQRAQTNPFWLGSMAFFIMPILLACFILFEILLTQWRQRETYIQRL 193 Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 S++D L+ +LN + + L S +++ ++V DID+FK+IND +GH GD+V+ ++ Sbjct: 194 SQLDPLTNVLNRRSLNTHLESLHQQQFDYAVVLLDIDHFKKINDIYGHHQGDQVLIEIAQ 253 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L + +GR GGEEF + +A +A R ++ + + IHI+ Sbjct: 254 CLSENLRSEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRCALQELPVCSAQNSPIHISA 313 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 S GI+ + +I +ADQALY K SGRN+V F E Sbjct: 314 SFGISSSAFAQDPYLVIRQADQALYAVKASGRNQVRTFHQTE 355 >gi|209967121|ref|YP_002300036.1| diguanylate cyclase, putative [Rhodospirillum centenum SW] gi|209960587|gb|ACJ01224.1| diguanylate cyclase, putative [Rhodospirillum centenum SW] Length = 1037 Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 9/178 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 +EL ++ R+ QL+ D L+G+LNH AF ++L + Y S++ D+D+FK++N Sbjct: 850 RELELANRRLEQLANTDPLTGILNHRAFWAALEAEWDRACRYGRVFSVLQIDMDHFKRVN 909 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD V+ L+D++ + + GRLGGEEFA + + A +A + I Sbjct: 910 DTYGHAAGDAVLQTLTDRVGRLLRSVDRFGRLGGEEFAVLLPDTGYEGAVQVAERILDAI 969 Query: 204 ENSQINISSGPSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + G +I I+ S G + R ++ I++RAD ALY AK GR++ D Sbjct: 970 RTEPV-LFEGTAIPISASIGGSSLRPDDANVNVILHRADAALYAAKGRGRSQAAFAED 1026 >gi|126664441|ref|ZP_01735425.1| Putative diguanylate cyclase (GGDEF domain) [Marinobacter sp. ELB17] gi|126630767|gb|EBA01381.1| Putative diguanylate cyclase (GGDEF domain) [Marinobacter sp. ELB17] Length = 588 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 104/211 (49%), Gaps = 16/211 (7%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 G+ P+ L Y V+ + +++ +I + L L ++++ + Q ++ D L+GL Sbjct: 368 GMIPYTQLGYYAVD-IGMIVDAILLMLALA----DLVRKNEEARTAAEQNAQTDLLTGLS 422 Query: 114 NHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N F+ S + N + + DID FK IND +GH VGDKV+ ++D+L Sbjct: 423 NRRGFLPVAESLWSLVTRKNRNVCVAMIDIDRFKNINDQYGHAVGDKVLKVIADELYRSR 482 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 + R GGEEF +SE EA +A R IE N G I TIS G+ Sbjct: 483 RRGDLLARWGGEEFTLLLPETSEAEALKVAERFRHNIEQLVTN-DRGRVIQCTISIGVTS 541 Query: 227 RCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 R H E ++ I RAD+ LY AK GRN+V Sbjct: 542 R-HSEHVTLDQAIARADEELYRAKLQGRNQV 571 >gi|288961296|ref|YP_003451635.1| diguanylate cyclase [Azospirillum sp. B510] gi|288913604|dbj|BAI75091.1| diguanylate cyclase [Azospirillum sp. B510] Length = 627 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 8/172 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 ++E + R+ QL+ +D L+GLLN AF+ + E+ +S++ D D+FK I Sbjct: 452 IRERKLQEERLWQLATLDPLTGLLNRRAFMERGAALLEEGWRQGRPVSVLMIDADHFKSI 511 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH GD V+ L+ L +GRLGGEEFA G+ +A +A L Sbjct: 512 NDGFGHQTGDVVLRMLAGILAAAVRGDDLLGRLGGEEFAVILPGADGPDADGIAERLLAD 571 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +++ + G + ITIS GI+ + + ++ AD+ALY AK GR+R Sbjct: 572 VRQARVP-APGRILTITISIGISVAQRRCALEDLLAAADRALYEAKTMGRDR 622 >gi|330950877|gb|EGH51137.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7] Length = 417 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N + I ++ + S++ DID+FK +ND +GHP Sbjct: 254 QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 313 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI ++ L R GGEEF SS ++AA LA +RK +E+ I Sbjct: 314 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRKSVESLVIPE 373 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +TIS G+AE E +++I RADQALY AK+ GRNRV C Sbjct: 374 TGS----VTISLGVAELSAGETAASLIQRADQALYQAKRLGRNRVEC 416 >gi|299135153|ref|ZP_07028344.1| response regulator receiver modulated diguanylate cyclase [Afipia sp. 1NLS2] gi|298590130|gb|EFI50334.1| response regulator receiver modulated diguanylate cyclase [Afipia sp. 1NLS2] Length = 458 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N +G+ E+ L+++ DID+FK IND +GH GD V Sbjct: 290 EMAITDPLTGLHNRRYLEGHVGTLAEQAAARGKPLALMILDIDFFKSINDTYGHDAGDDV 349 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213 + + ++ R GGEEF + A I+A LR+ I N +I G Sbjct: 350 LREFATRIRKSIRGIDLAARYGGEEFVIVMPETDLHVAGIIAERLRRSIANEPFSIEKGT 409 Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 I +TIS GI+ K EP++ ++ RADQALY AK GRNRVV Sbjct: 410 KRIEVTISVGISMLEKKSEPVADVLKRADQALYRAKHDGRNRVV 453 >gi|71736497|ref|YP_274299.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557050|gb|AAZ36261.1| CHASE domain/sensory box-containing nucleotide cyclase, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 796 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%) Query: 85 ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129 + GS+L F+S R+ Q LS D L+G N F + + + L Sbjct: 609 VDGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 668 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 SI+ DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ Sbjct: 669 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 728 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +A LA LR+ + N I G +T S GIA E I T++ RAD +Y AK+ Sbjct: 729 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 785 Query: 250 SGRNRV 255 +GR+RV Sbjct: 786 AGRDRV 791 >gi|311693741|gb|ADP96614.1| GGDEF domain protein [marine bacterium HP15] Length = 346 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/215 (31%), Positives = 102/215 (47%), Gaps = 31/215 (14%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN-- 114 P L + + NLS+V + Y++ L + + ++ +++ D L+GL N Sbjct: 142 PQTALNIVHLFNLSVVFA------MFSYLASYYLSMVVSAQRKLREMATTDSLTGLFNRR 195 Query: 115 HSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 H + +S + + D+D+FK IND FGH GD+V+ ++D + Sbjct: 196 HMTYLAEKEVSRFRRSGHPVGFLLLDVDHFKSINDAFGHEAGDRVLGCVADVIREELRAQ 255 Query: 170 MFVGRLGGEEF--------AAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITI 220 +GR GGEEF A A S+E+ A LA D R +I G I +TI Sbjct: 256 DLIGRWGGEEFLVILPDTNADKAQASAERIRKAFLARDWRAVI---------GGDIDVTI 306 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G++E E +S + RAD+ALY K GRNRV Sbjct: 307 SIGVSELRTGEDLSAAVSRADEALYRGKTGGRNRV 341 >gi|116252452|ref|YP_768290.1| GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257100|emb|CAK08194.1| putative GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841] Length = 355 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 18/184 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQ 141 + KEL Y RI+ D L+ L N AF L S +++ DID FK+ Sbjct: 164 QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAIFDNSSMRPVTALLLCDIDNFKK 219 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GHPVGDKV+A ++ + +FV R GGEEFA G++ +E +A +R+ Sbjct: 220 INDTYGHPVGDKVLATVASVIRSNVRRDIFVARTGGEEFALIIDGNTPEEVTGIAERIRR 279 Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +E NS+ ++ GP +T+S GI + E + + D ALY AK +GRN + Sbjct: 280 TLETTPFKNSRTRVNYGP---VTVSIGICMASNAEDAGELYSKTDIALYGAKNAGRNCTI 336 Query: 257 CFSD 260 + D Sbjct: 337 LYQD 340 >gi|238758044|ref|ZP_04619225.1| Diguanylate cyclase [Yersinia aldovae ATCC 35236] gi|238703798|gb|EEP96334.1| Diguanylate cyclase [Yersinia aldovae ATCC 35236] Length = 209 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 96/185 (51%), Gaps = 14/185 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132 LLG ++ K L S + ++S D L+GL N H+ F S Y +++ Sbjct: 25 LLGLVTYRTAKRLAESKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 83 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191 DID FK IND FGH VGD+ I L+++L++ VGR GG+EF A ++ EQ Sbjct: 84 LLDIDNFKSINDTFGHAVGDEAITILAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 143 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250 +LA R I +I PS+ + +SAGIA+ H + AD ALY+AK + Sbjct: 144 REVLA---RIQIRLGEIIFKHAPSLQLRLSAGIADYRHDMVNYQQWLKAADAALYLAKDN 200 Query: 251 GRNRV 255 GRNR+ Sbjct: 201 GRNRI 205 >gi|170768256|ref|ZP_02902709.1| diguanylate cyclase (GGDEF) domain protein [Escherichia albertii TW07627] gi|170123022|gb|EDS91953.1| diguanylate cyclase (GGDEF) domain protein [Escherichia albertii TW07627] Length = 472 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 10/166 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++S + D L+ + + S +L + + L+++ DIDYFK INDN+GH GDK Sbjct: 297 KQVSLRADFDFLTQVYSRSGLYEALKNPSLQQTQHLTVMLLDIDYFKNINDNYGHECGDK 356 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V++ + + + G V R+GGEEFA A + + ++A +RK +E N Sbjct: 357 VLSVFAQHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFNWQQ- 415 Query: 214 PSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 ++++T+S G+ C + + ++ AD+ LY +KK GRNR Sbjct: 416 KTLYLTVSIGVGSGCASFLTLTDDFNKLMVEADECLYRSKKDGRNR 461 >gi|315125736|ref|YP_004067739.1| diguanylate cyclase [Pseudoalteromonas sp. SM9913] gi|315014250|gb|ADT67588.1| diguanylate cyclase [Pseudoalteromonas sp. SM9913] Length = 426 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 9/173 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQIN 143 K+L + ++ L+ D L+G LN +F + S +KL S + D+DYFK IN Sbjct: 253 KDLQVLNEKLKTLATRDSLTGTLNRGSFFDTANHLLELSQRQKLPASFILIDLDYFKNIN 312 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGDKV+ +D + + +GR+GGEEFA + + LAN +RK + Sbjct: 313 DTYGHFVGDKVLIHFTDTVQSMIRESDLIGRVGGEEFALFLPNTGLDNSFKLANKIRKAV 372 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255 +S + + G ++ T+S G+A K+ T +++ AD LY AK GR+RV Sbjct: 373 VDSTLEV-DGETVIYTVSIGVASSELKDCSVTELFKVADLKLYCAKDKGRDRV 424 >gi|304407393|ref|ZP_07389046.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus curdlanolyticus YK9] gi|304343834|gb|EFM09675.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus curdlanolyticus YK9] Length = 327 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 12/177 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 +EL +++ L+ D L+GL N F L S++ DID+FK IN Sbjct: 152 QELLRLNHQLEALASTDPLTGLRNRRFFQEQLLANIALFQRMRLPFSLLIVDIDHFKAIN 211 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGHPVGD V+ L L + V R GGEEF A S+ A + A R Sbjct: 212 DTFGHPVGDAVLTDLGQMLRSMSRESDIVARYGGEEFVIIAPSSTRDNAKLAAERFR--- 268 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +QI ++ +T+S G+A + T++ +ADQALY +K +GRNRV +D Sbjct: 269 --AQIEAATLGGCQVTVSIGVATMTSVDTDVTLLQKADQALYASKSNGRNRVTHAAD 323 >gi|294653544|ref|NP_714781.2| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] gi|293630744|gb|AAN51796.2| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] Length = 172 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 12/169 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N++S+L + L+G+ N F I+ + + +I+ DID+FKQ+ND FGH Sbjct: 2 NQVSKLIHTNPLTGIWNRRGFLKLTQRSIALENRHKNEWAILMIDIDHFKQVNDRFGHDA 61 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDK + ++ L V R GGEEFA G ++ + +A +LRK +EN QI + Sbjct: 62 GDKTLIRVAQILSRSIRQTDVVCRWGGEEFAIFLCGVGQEISINIAEELRKEVEN-QIRL 120 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G +T+S G++ K+ + ADQALY AK SGRNRV F+ Sbjct: 121 KDGNP--VTLSIGVS--GGKQNLEEAFTNADQALYQAKTSGRNRVCAFN 165 >gi|39934859|ref|NP_947135.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009] gi|39648709|emb|CAE27231.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris CGA009] Length = 272 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 16/205 (7%) Query: 61 LEYILVENLSLVI---ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 +E V SLV+ +S T+S + Y S ++++L + + ++SR D L+GLLN Sbjct: 46 VEVGAVVKASLVVALSVSTTLSGAMAYRSARLMRQLTSTRAELMRMSRTDPLTGLLNRRG 105 Query: 118 F----ISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP- 169 F + L N + + + D+D FK IND++GH +GD+V+A + D ++ F P Sbjct: 106 FDEAAATQLAQANFAGQPVVAMMCDLDRFKAINDHYGHNIGDRVLAEIGD-ILRDFAAPR 164 Query: 170 -MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 M + R GGEEFA +G S+++A A +L ++ + G + +T+S G+A Sbjct: 165 GMLIARHGGEEFAGLMVGVSDEQANDYALELCRLCATAV--ACDGRLVAVTMSFGLAAYR 222 Query: 229 HKEPISTIIYRADQALYVAKKSGRN 253 E +S ++ RAD ALY AK GR Sbjct: 223 GGE-LSALMRRADLALYRAKDLGRT 246 >gi|317046808|ref|YP_004114456.1| diguanylate cyclase [Pantoea sp. At-9b] gi|316948425|gb|ADU67900.1| diguanylate cyclase [Pantoea sp. At-9b] Length = 364 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/248 (29%), Positives = 122/248 (49%), Gaps = 21/248 (8%) Query: 34 FFSIFIATVIFIANIFL-FYIGLTPFYGLEYILVENLSLVIISITISL-LLGYISGSILK 91 S+F + I +++ + F + +TP +L + L++I TI+L L+G+ +++ Sbjct: 107 LLSVFFVSAIALSDYLVAFCLHITPPVFTVLLLDDGQHLMMILFTITLPLIGFSLHHLMR 166 Query: 92 ELFISYNR------------ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135 F + R S LS +D L+GL N + L + E + ++ D Sbjct: 167 RRFDHFTRRLVRQLYEEKESFSDLSMLDPLTGLYNRRGLKNRLDTVLENHAGSHFVLLLD 226 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK NDN+GH +GD+ +A +S + + V R GGEEF + A L Sbjct: 227 IDHFKAYNDNYGHAMGDQALARVSVAIRDAVRSRDVVTRYGGEEFLVLMTNVNASIAMKL 286 Query: 196 ANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A +R+ + + +I + S H+TISAGIA + + AD+ALYVAK GRN Sbjct: 287 AERIRQYVVDLEIPHRFNEKVSTHVTISAGIAP-IFDDDFDQAVANADRALYVAKNQGRN 345 Query: 254 RVVCFSDI 261 ++ + D+ Sbjct: 346 TILAWEDL 353 >gi|258404468|ref|YP_003197210.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense DSM 5692] gi|257796695|gb|ACV67632.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense DSM 5692] Length = 531 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 96/174 (55%), Gaps = 10/174 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS-SLGSYNE------KLSIVFFDIDYFKQINDNFGHPV 150 +R+ Q++ D L+GL N F + G +N ++I+ DIDYFK+IND +GH Sbjct: 351 SRLLQMAATDELTGLYNRRRFFELARGEFNRAKRYSSPMTILLLDIDYFKRINDEYGHDA 410 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + + + + + RLGGEEF A + + +A +A +R IE++ IN+ Sbjct: 411 GDTALRCIVSMIASQLRSLDVLARLGGEEFVALLPETHQFDAERIAERIRSEIESTAINL 470 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 ++ +T+S G+A + + + +I RAD+A+Y AK+ GRN+ VC + N Sbjct: 471 FE-TTLFVTVSIGVAGYSKEMQDVGELINRADEAMYRAKRDGRNQ-VCLATPRN 522 >gi|330828259|ref|YP_004391211.1| GGDEF domain-containing protein [Aeromonas veronii B565] gi|328803395|gb|AEB48594.1| GGDEF domain protein [Aeromonas veronii B565] Length = 340 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 91/172 (52%), Gaps = 5/172 (2%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 +KEL + N +L+ D L+ LLN AF + L + S++ DID FK ND + Sbjct: 165 IKELRAALNETRKLANEDALTSLLNRRAFDLELEGLIRSQQSFSLILTDIDRFKSFNDEY 224 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH +GD+V+ S +L + R+GGEEFA S A +A +R+ IE Sbjct: 225 GHLLGDQVLRAFSKRLRDASKEGVTAYRIGGEEFALLLPHRSLALARQMAESMRRAIERM 284 Query: 207 QI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I + SG I HIT S G+ E +E +++ R D+ LY AK+ GRNRV+ Sbjct: 285 SILDRKSGRRIDHITASFGVGEFNGQESADSLVERTDKLLYKAKELGRNRVM 336 >gi|291613706|ref|YP_003523863.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1] gi|291583818|gb|ADE11476.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1] Length = 387 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 17/197 (8%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----- 128 +++ S LLG I G +L + + L+ D L+G+ N A + Y E+ Sbjct: 197 VAVMASSLLGSI-GFLLMVKERTDREVLHLAMTDSLTGVPNRRALMD----YAERAMAQR 251 Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 ++++ D D+FK+IND +GHPVGD+V+ L+ L +GR GGEEF A Sbjct: 252 GGRSVALLMIDADHFKRINDTYGHPVGDEVLRQLTRLLQQRLRGGDLLGRYGGEEFCVVA 311 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQ 242 + + A LA LR+ + ++ ++ G + IT+S GIA + I+ AD Sbjct: 312 PDADAEGALKLAESLRESVASAVLDTEQG-KLSITVSIGIAHSTADAGRALKDILAEADI 370 Query: 243 ALYVAKKSGRNRVVCFS 259 ALY AKK GRN+VV FS Sbjct: 371 ALYSAKKGGRNQVVSFS 387 >gi|332307136|ref|YP_004434987.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174465|gb|AEE23719.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 350 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNEK--LSIVFFDIDYFKQINDNF 146 L I I QL+ D L+GL N + I+ L +E+ LS++ D+DYFK+IND + Sbjct: 184 LAIRNAEILQLAETDKLTGLYNREKLENTLIALLPGVDEQYPLSVMLLDVDYFKKINDQY 243 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GDKV+ L+ +L + V R GGEEF +S + A LA +R+ I Sbjct: 244 GHFEGDKVLQALAKKLKDLMREEDIVARWGGEEFVVLCTNASLETAMQLAQRIREDIAK- 302 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 Q+ G +T+S G+A+ + + +++ RAD LY AK +GRN V+ Sbjct: 303 QVICGHG----LTVSVGVAQYVPGDSVESLLDRADVGLYQAKNNGRNSVIA 349 >gi|289207287|ref|YP_003459353.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] gi|288942918|gb|ADC70617.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] Length = 446 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 10/178 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL S + QL+ D L+GL N AF ++ + + S++ D+D FKQIND Sbjct: 252 ELEASNMELEQLTLTDPLTGLGNRRAFQEAIEKDVALFRRHGDPASLLILDLDAFKQIND 311 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+++ ++ L T V RLGGEEFA + ++A +A LR+ + Sbjct: 312 THGHEGGDRILRRFAELLQDRVRTTDLVCRLGGEEFAVFLRRAEPEDALAIAEALREAVA 371 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259 ++ + G IT+S G+A ++ ++T + ADQA+Y +K+ GRNRV ++ Sbjct: 372 AMEVALDDGARASITVSIGVAWLSLEDDLTTTRALCRAADQAMYASKRRGRNRVTDYT 429 >gi|149920296|ref|ZP_01908767.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1] gi|149818883|gb|EDM78323.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1] Length = 269 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 97/181 (53%), Gaps = 11/181 (6%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136 +ISG+ ++ + ++++ ++R D L+G+ N AF ++ Y L+++ FDI Sbjct: 88 FISGTNVEAAY--HDQLYAMTRYDALTGVYNRRAFDEKITDEVARARRYGRPLALLLFDI 145 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+ ND +GH GD V+ ++ + FV R GGEEFAA L E + A Sbjct: 146 DHFKRCNDTYGHRAGDHVLREVAQLVQRRARKHDFVARYGGEEFAALLLEFEEPGPRLFA 205 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++R ++++ + G I IT+S G+ E +I ADQ LY AK+ GRNRV Sbjct: 206 EEVRALVQDHEFEF-EGTVIPITMSIGLVLWTPEHETAGQLIEAADQCLYRAKEGGRNRV 264 Query: 256 V 256 V Sbjct: 265 V 265 >gi|209547741|ref|YP_002279658.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533497|gb|ACI53432.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 392 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 7/200 (3%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124 E+LSL + I +G +S ++ + + +R+ ++ D L+GLLN A G+ Sbjct: 186 AEDLSLAV-CIAGMTGIGALSLALHQWRLAARHRLEAIT--DPLTGLLNRRALFDQYGTR 242 Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 +++ FDID+FK +ND FGH GD+VI + +L RLGGEEFA Sbjct: 243 PMGSTTAVIVFDIDHFKSVNDRFGHASGDRVIKAFAAELATHCRAGDIAARLGGEEFALV 302 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242 + A + A +R+ E +I I + T+S G+A R ++ AD+ Sbjct: 303 LKETMPGRAELAAERIRRAFEAREIEIDD-EVLTCTVSVGVAPGRAKSLDFDAMLSAADK 361 Query: 243 ALYVAKKSGRNRVVCFSDIE 262 ALY AK+ GRNRV +E Sbjct: 362 ALYAAKRGGRNRVELAGHLE 381 >gi|147678465|ref|YP_001212680.1| hypothetical protein PTH_2130 [Pelotomaculum thermopropionicum SI] gi|146274562|dbj|BAF60311.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 564 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 16/208 (7%) Query: 68 NLSLVIISITISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 L II+ T+ L L + G + K++ + ++ ++ D L+GL NH F SL Sbjct: 154 KLQTDIINSTVMLTLAWFIGGLADVDKDIRVM---LTDMANTDGLTGLFNHRYFHQSLQD 210 Query: 125 Y-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + N +LS++ FDIDYFK NDN+GH GD+++ + L V +P R GG Sbjct: 211 HIKQARENNSQLSLIMFDIDYFKFYNDNYGHQKGDELLKEMGLILNTVVKSPCIAARYGG 270 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAE-RCHKEPIST 235 +EF GS E+ A +A ++R+ IE+ ++ P IT+S G+A H Sbjct: 271 DEFTVIVPGSKER-AMEIAEEIRQAIESQPFEGAAVQPKGKITVSLGVATFPKHGSTPKE 329 Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIEN 263 +I AD+A+Y AK G + FS +++ Sbjct: 330 LIRSADEAMYKAKYQGNKAQLYFSVMDD 357 >gi|218887844|ref|YP_002437165.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758798|gb|ACL09697.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 698 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 9/165 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ QL+ D L+G+ N F++ L Y LS++ D D+FK IND +GH G Sbjct: 506 RLEQLATTDELTGVANRRHFMARLEDEAARAQRYGRPLSVLLLDADHFKSINDTWGHEAG 565 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++D + + +GRLGGEEF ++++ A A +R +E++ + + Sbjct: 566 DMVLRHITDVMGLSLRENDLIGRLGGEEFGVLLPETAQERALRTAERIRAAVEDAPVAVR 625 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T+S G AE R + + +I RAD L AK+ GRNRV Sbjct: 626 D-VWVGCTVSVGAAEYRGANDSLDDLIRRADHMLMRAKEEGRNRV 669 >gi|325475238|gb|EGC78423.1| GGDEF domain-containing protein [Treponema denticola F0402] Length = 371 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 12/201 (5%) Query: 58 FYGLEYILVENL-SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 F E ++EN+ SL I+I S LL + I+ L + + + L+ H Sbjct: 172 FTDYEKNIIENIASLAAIAINNSQLLEMTTTDIMTHLKLKHY---------FFTLLMEHL 222 Query: 117 AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 I+S G E LSI+ DID+FK IND +GH GD V+ ++ + R G Sbjct: 223 YTINSSGEKKETLSILMIDIDFFKNINDTYGHAAGDIVLEEVAKIIKSCTRNADTAARYG 282 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIST 235 GEEF +S A +A +RK +E I + G I++TIS G++ E + Sbjct: 283 GEEFVVMLNNTSASAAMAVAERIRKSVEEKSI-MYDGKKINVTISIGVSSYNFDLESAKS 341 Query: 236 IIYRADQALYVAKKSGRNRVV 256 I+ RAD+ALY +K++GRNRV Sbjct: 342 IVERADKALYESKQNGRNRVT 362 >gi|330872987|gb|EGH07136.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 425 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 11/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N A I++ + S + DID+FK +ND +GHP Sbjct: 255 QKLLEIAHSDPLTGLDNRRAAEHTLERMINTARIAGKPFSFIICDIDHFKSVNDQYGHPA 314 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ L R GGEEF SS ++AA LA+ +RK +EN +I Sbjct: 315 GDSVLKSVAAILKHRIRAFDVAARWGGEEFLILVPDSSLKQAAELADRIRKGVENLEIP- 373 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +GP +TIS G++E E +++I RAD+ALY AK+ GRNRV Sbjct: 374 EAGP---VTISLGVSELSPGETAASLIQRADKALYQAKRLGRNRV 415 >gi|15896780|ref|NP_350129.1| GGDEF domain-containing protein [Clostridium acetobutylicum ATCC 824] gi|15026638|gb|AAK81469.1|AE007850_10 Membrane associated GGDEF domain containing protein [Clostridium acetobutylicum ATCC 824] gi|325510951|gb|ADZ22587.1| Membrane associated GGDEF domain containing protein [Clostridium acetobutylicum EA 2018] Length = 367 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 106/216 (49%), Gaps = 10/216 (4%) Query: 50 LFYIGLTPFYGLEYI--LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107 L I +T +Y L + +++ L I I +S +L Y+ +K Y R + S D Sbjct: 141 LLMINVTDYYMLRKVDGIIDVLVQYSIIILVSGILQYMLLDYVKTSNKLYRRYKRDSTKD 200 Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+GL N F + NE LS + DIDYFK+IND +GH +GD ++ LS Sbjct: 201 FLTGLSNVRQFDKVFSTARERVKQNNESLSCIMIDIDYFKKINDTYGHAIGDVILRELSK 260 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L+ V R+GGEEF S ++ +A + K + + I I+IT+ Sbjct: 261 VLMKNVRGRDLVARVGGEEFCILLFNCSREKTFQIACRINKEVAEHKFFIGEDEFINITV 320 Query: 221 SAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 S G++ P I + RAD ALY AK+SGRN+V Sbjct: 321 SVGLSIYPEITPEIEDLRERADAALYAAKRSGRNKV 356 >gi|220934553|ref|YP_002513452.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp. HL-EbGR7] gi|219995863|gb|ACL72465.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp. HL-EbGR7] Length = 332 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 85/162 (52%), Gaps = 9/162 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LSR D L+ L N + LG Y S++ FDID+FK++ND +GH GD+VI Sbjct: 154 LSRTDRLTQLNNRGFWEECLGGEFARCKRYGTVSSLIMFDIDHFKKVNDTYGHQAGDEVI 213 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S L GR GGEEF +S ++A + A+ LR++ E + + Sbjct: 214 RTVSQLLTKTLRDTDIAGRYGGEEFGVILTDTSAEKARVFADRLRRLNEAVTVR-HEDVA 272 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I TIS GIA+ E S I AD+ALY++K+ GRNRV Sbjct: 273 IRFTISLGIAQFDPAMERHSQWIEAADKALYLSKQGGRNRVT 314 >gi|254457638|ref|ZP_05071066.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales bacterium GD 1] gi|207086430|gb|EDZ63714.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales bacterium GD 1] Length = 662 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 11/166 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N++ +L+ ID L+G+ N ++ Y+E+ ++V FDID+FK +ND +GH Sbjct: 499 NKLQKLATIDSLTGIYNRHKTNEEIEIQLAKAKRYDEEFALVMFDIDHFKDVNDTYGHDA 558 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ SD ++ GR GGEEF + EA +A+ +R+ + N Sbjct: 559 GDDILKEFSDVVLKHIRESDRFGRWGGEEFMLLLPKVDKDEAIRVADKIREFVSRYPFNK 618 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S IT+S G + + +++ R D+ALY AK SGRNRV+ Sbjct: 619 LS----RITVSVGASIYRENDTKESLLKRTDEALYQAKSSGRNRVI 660 >gi|241764929|ref|ZP_04762929.1| diguanylate cyclase [Acidovorax delafieldii 2AN] gi|241365491|gb|EER60256.1| diguanylate cyclase [Acidovorax delafieldii 2AN] Length = 246 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 4/156 (2%) Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+G+LN +A I + + ++ L+++ DID+FK++ND+FGHP+GD VI + + L Sbjct: 89 DPLTGVLNRAAIIERVNQHAQQNDLALIVLDIDHFKRVNDSFGHPIGDTVILGVVNCLKA 148 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 V +GR+GGEEF + +A +RK IE + + G IT S G+ Sbjct: 149 VVPRCAHIGRVGGEEFTVLLPHRETPASEQVAETMRKAIETREFGLPDGS--RITASFGV 206 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + AD+ALYVAK+ GRN+VV +D Sbjct: 207 SHLSRGGCFDDAYGLADEALYVAKRGGRNQVVRAAD 242 >gi|241204961|ref|YP_002976057.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858851|gb|ACS56518.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 355 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 18/184 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQ 141 + KEL Y RI+ D L+ L N AF L S +++ DID FK+ Sbjct: 164 QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAIFDNSSMRPVTALLLCDIDNFKK 219 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GHPVGDKV+A ++ + +FV R GGEEFA G++ +E +A +R+ Sbjct: 220 INDTYGHPVGDKVLATVASVIRSNVRRDIFVARTGGEEFALIIDGNTPEEVTGIAERIRR 279 Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +E NS+ ++ GP +T+S GI + E + + D ALY AK +GRN + Sbjct: 280 TLETTPFKNSRTRVNYGP---VTVSIGICMASNAEDAGELYSKTDIALYGAKNAGRNCTI 336 Query: 257 CFSD 260 + D Sbjct: 337 LYQD 340 >gi|157736990|ref|YP_001489673.1| GGDEF/PAS domain-containing protein [Arcobacter butzleri RM4018] gi|157698844|gb|ABV67004.1| GGDEF/PAS domain protein [Arcobacter butzleri RM4018] Length = 463 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/182 (36%), Positives = 95/182 (52%), Gaps = 12/182 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL+ + Q + ID L+G+ N F + LSI+ DID FK+IND Sbjct: 284 ELYSMAQTLEQQASIDILTGIFNRMKFEEFFDLEVQKAKIQKNPLSIILLDIDDFKRIND 343 Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 FGH GD+VI +S+ L V GT + R GGEEF +S ++A I+AN+LR+II Sbjct: 344 TFGHDEGDEVIKSISNLLTKNVRGTDT-LSRWGGEEFVILLPNTSLEQAKIVANNLRRII 402 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 N+S IT S G+A +++ + R D+ LY AK SG+N V+ ++ N Sbjct: 403 FEHDFNVSQKK---ITCSFGVAIYNYEDTKEKLFKRVDKILYKAKNSGKNIVLGEDELNN 459 Query: 264 NT 265 T Sbjct: 460 LT 461 >gi|316934069|ref|YP_004109051.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315601783|gb|ADU44318.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 411 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 11/176 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141 ++ E +S ++ + + +D L+G+LN F + E+ +S + FDID+FK Sbjct: 205 LVSERAVSMHKAA--ASLDPLTGILNRRGFSEACARMIEREAEAGRPVSALIFDIDHFKS 262 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND FGHP GD+V+ + + GR+GGEEF AA L EA A +R+ Sbjct: 263 VNDRFGHPAGDEVLKLFAAIVSNSLRISDLCGRIGGEEF-AALLPCPIDEAVTAAERVRE 321 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +N I + P + T+S G+A + ++ AD ALY AK+ GRNRVV Sbjct: 322 AFQNCGIEVDDAP-VATTVSIGVAGGPAGVVLDVLLAAADTALYQAKRGGRNRVVA 376 >gi|117925030|ref|YP_865647.1| diguanylate cyclase [Magnetococcus sp. MC-1] gi|117608786|gb|ABK44241.1| periplasmic/7TM domain sensor diguanylate cyclase [Magnetococcus sp. MC-1] Length = 464 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 81/164 (49%), Gaps = 11/164 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QLSR D L+GL N S +L LS+V DID+FKQ+ND +GH V Sbjct: 301 ERLKQLSRTDLLTGLPNRSFLNETLQHELLRAHRNGRPLSVVLLDIDHFKQVNDQYGHLV 360 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ + L VGR GGEEF S ++ +L + L ++ Sbjct: 361 GDQVLVDFAQLLKKTVRGQDHVGRWGGEEFLILCPESDLKQTLVLCDRLHTVVRTHHFAT 420 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 T SAGIA E ++ RAD+ALY AK+SGR++ Sbjct: 421 QQ----QQTFSAGIALFTPPEEADGMLQRADEALYKAKRSGRDQ 460 >gi|325123877|gb|ADY83400.1| sensor histidine kinase [Acinetobacter calcoaceticus PHEA-2] Length = 360 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 133/287 (46%), Gaps = 36/287 (12%) Query: 7 DFLSIWLCHEKNL-ESFSPHTFMIYFS-------------IFFSIFIATVIFIANIFLFY 52 F ++ LCH+ L S SP T + Y ++ ++ AT+I +L Sbjct: 74 QFFALMLCHDGYLIGSISPATMVGYVGTIGVGLVLFDRKIVYSALVPATIILTVCTYLSM 133 Query: 53 IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK---------ELFISYNR---- 99 G L Y + N + + T S LG ++ I+ E+ ++ R Sbjct: 134 TG-----ALAYAPLFNFRAMDHAQTNSFWLGSMAFFIMPILLACFVLFEILLTQWRQRET 188 Query: 100 -ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155 I +LS+ID L+ +LN + L S +++ ++V DID+FK+IND +GH GD+V+ Sbjct: 189 YIQRLSQIDPLTNVLNRRSLNMHLESLHQQQFDYAVVLLDIDHFKKINDIYGHHQGDQVL 248 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L + +GR GGEEF + +A +A R+ ++ + + Sbjct: 249 IEIAQCLSENLRSEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELPVFTAQNNP 308 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 IHI+ S GI+ + +I +ADQALY K SGRN+V F E Sbjct: 309 IHISASFGISSSAFAQDPYLVIRQADQALYAVKASGRNQVRTFHQTE 355 >gi|91793233|ref|YP_562884.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91715235|gb|ABE55161.1| diguanylate cyclase [Shewanella denitrificans OS217] Length = 339 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 13/176 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKL---SIVFFDIDYFK 140 S LKE + +S+++ D L+ L N A+ + + +N+ S++ DID FK Sbjct: 163 SRLKE---EMDNLSKVAMTDELTSLNNRRAYELFAVEQVAKFNQTQTVCSLLMIDIDLFK 219 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND +GH +GDKV+A+++ L FV R GGEEF G+ Q+A LAN+LR Sbjct: 220 GFNDTYGHLIGDKVLAYVALSLKQGVKGADFVARYGGEEFVILLPGTDLQDAVTLANNLR 279 Query: 201 KIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +++ + Q+ + +T+S G+A + T++ RAD+ LY AK++GR+ Sbjct: 280 ELVSHKQLTVGKEKKQQLGKVTVSIGVASIQTGDDADTLLSRADEKLYEAKQAGRD 335 >gi|254524057|ref|ZP_05136112.1| ggdef family protein [Stenotrophomonas sp. SKA14] gi|219721648|gb|EED40173.1| ggdef family protein [Stenotrophomonas sp. SKA14] Length = 465 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 10/173 (5%) Query: 97 YNRISQL-SRIDCLSGLLNHSAFISS-------LGSYNE-KLSIVFFDIDYFKQINDNFG 147 + RI +L + D L+ LLN F+ + L + N S++ D+D+FK IND G Sbjct: 281 FERIGELDAGSDALTNLLNRR-FLPTVLRREIELATRNHTPFSLLLLDLDHFKAINDGHG 339 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+ + ++ L + ++ R GGEEF + +SE +A ++A LR+ I S Sbjct: 340 HDAGDRALQHVAGLLGQLTRGSDYLFRYGGEEFVVVLVAASESQAEVIAESLRRQIAQSS 399 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +++G + +T S G+A ++ RAD A+Y AK+SGRNRVV SD Sbjct: 400 VALANGQVLALTASIGVAGHDGHPDYERLMARADAAMYEAKRSGRNRVVVASD 452 >gi|298291065|ref|YP_003693004.1| diguanylate cyclase [Starkeya novella DSM 506] gi|296927576|gb|ADH88385.1| diguanylate cyclase [Starkeya novella DSM 506] Length = 390 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/194 (32%), Positives = 105/194 (54%), Gaps = 11/194 (5%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126 E+LSL+++ I +G ++ ++ + S +R+ ++ D L+GLLN A ++G Sbjct: 187 EDLSLLVM-IACVPGIGAVTLALNQARIASKHRLDAMT--DPLTGLLNRRALFDAVGERP 243 Query: 127 --EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 E+ +++ FDID+FK IND GH VGD+VIA + L RLGGEEFA Sbjct: 244 IAERTAVLVFDIDHFKSINDRHGHAVGDRVIAVFARALEEQRPAAAHAARLGGEEFALVL 303 Query: 185 LGSSEQEAAILANDLRK--IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRAD 241 ++ + + +A +R+ ++++I+ + + SAGIA H ++ AD Sbjct: 304 PAATAEGSLRIAEQVRRSFCTLTAELDIA---DLACSASAGIAFGVTHGRTFEQVLNEAD 360 Query: 242 QALYVAKKSGRNRV 255 ALY AK +GRNRV Sbjct: 361 AALYAAKNAGRNRV 374 >gi|330828523|ref|YP_004391475.1| GGDEF family protein [Aeromonas veronii B565] gi|328803659|gb|AEB48858.1| GGDEF family protein [Aeromonas veronii B565] Length = 383 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 11/203 (5%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKEL--FISYNRISQLSRIDCLSGLLNHSAF-- 118 Y+L LV++ + +L + +I++E ++ QL++ D L+G+ N F Sbjct: 176 YMLGLGCGLVVLEVGRRMLHRWFELAIMREHENLTLLRQLDQLAKQDPLTGVANRRHFNI 235 Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FV 172 ++ LS++ D+DYFK+ ND++GH VGD + ++ L TP V Sbjct: 236 ELDRALAHSQESGAPLSLILIDVDYFKRFNDHYGHQVGDMCLKEVAQALNRAVRTPSDLV 295 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231 R GGEEF + Q AA +A L+ + + ++ +++S + +T+S GIA E Sbjct: 296 ARYGGEEFMLLLPNTDRQAAASVAQRLQDGLASLRLEHLASEVAPWVTVSQGIASNVSGE 355 Query: 232 PISTIIYRADQALYVAKKSGRNR 254 S ++ RADQALY AK GRN+ Sbjct: 356 GASQLLERADQALYRAKALGRNQ 378 >gi|77543223|gb|ABA87033.1| hypothetical protein [Vibrio cholerae] gi|259156472|gb|ACV96416.1| pas/pac/ggdef-domain containing protein [Vibrio cholerae Mex1] Length = 423 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/181 (36%), Positives = 99/181 (54%), Gaps = 12/181 (6%) Query: 84 YIS-GSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSY----NEKLSIVFFD 135 Y+S G + E + + + +D L+GL N + A +S S+ E +S++ D Sbjct: 237 YVSVGKDVTERLREEQALRESATVDQLTGLFNRNHGKALLSEAYSFTLSREEPMSLILCD 296 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FKQIND+FGHPVGD+++A +S L V R GGEEF ++ AA L Sbjct: 297 IDHFKQINDSFGHPVGDQILAQVSGLLRKSVRGNDRVIRWGGEEFLILLENCTDMVAAEL 356 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 A LR I + Q S G +T+S G+A KE + +I R D+ALY +K++GRN++ Sbjct: 357 AERLRLRIASEQFQ-SVG---KVTVSLGVASLFQKESLEQLISRCDEALYKSKRNGRNQL 412 Query: 256 V 256 Sbjct: 413 T 413 >gi|315636182|ref|ZP_07891436.1| GGDEF/PAS domain protein [Arcobacter butzleri JV22] gi|315479543|gb|EFU70222.1| GGDEF/PAS domain protein [Arcobacter butzleri JV22] Length = 463 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 12/170 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL+ + Q + ID L+G+ N F + + LSI+ DID FK++ND Sbjct: 284 ELYSMAQNLEQQASIDILTGIFNRMKFEEYFDLEVQKAKMHRNPLSIILLDIDDFKKVND 343 Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 FGH GD+VI +S+ L V GT + R GGEEF +S ++A I+AN+LRKII Sbjct: 344 TFGHNEGDEVIKSISNLLTKNVRGTDT-LSRWGGEEFVILLPSTSLEQAKIVANNLRKII 402 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + NI P I+ S G+A ++ + R D+ LY AK SG+N Sbjct: 403 FDHDFNI---PQQKISCSFGVAIYNPEDTKEELFKRVDKILYKAKNSGKN 449 >gi|254283017|ref|ZP_04957985.1| sensory box histidine kinase [gamma proteobacterium NOR51-B] gi|219679220|gb|EED35569.1| sensory box histidine kinase [gamma proteobacterium NOR51-B] Length = 494 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 15/178 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N A S + S ++E LS+ DID+FK +NDN+GH + Sbjct: 318 RRLKAIADKDPLTGAGNRRALESVIKSELSRAHRHDEPLSVAILDIDWFKSVNDNYGHLM 377 Query: 151 GDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD+V IA L L+ + T R+GGEEFA +S EA LA LR+ + Sbjct: 378 GDRVLIDIAKLCKDLIRPYDT---FARIGGEEFALLLPKTSVPEAERLAERLRQRVAEHT 434 Query: 208 INISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + +TIS G+A + + +I AD+ALY AK GRNRVV F + +N Sbjct: 435 TQAGEN-RVQVTISIGVALLAKGAKTLEEMIESADRALYCAKLDGRNRVVTFEQLRSN 491 >gi|331010553|gb|EGH90609.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 796 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%) Query: 85 ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129 + GS+L F+S R+ Q LS D L+G N F + + + L Sbjct: 609 VDGSVLWHGFLSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 668 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 SI+ DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ Sbjct: 669 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 728 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +A LA LR+ + N I G +T S GIA E I T++ RAD +Y AK+ Sbjct: 729 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 785 Query: 250 SGRNRV 255 +GR+RV Sbjct: 786 AGRDRV 791 >gi|302336914|ref|YP_003802120.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta smaragdinae DSM 11293] gi|301634099|gb|ADK79526.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta smaragdinae DSM 11293] Length = 522 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 94/177 (53%), Gaps = 11/177 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHP 149 ++ L+ D L+G+ N +SS G Y L+++ FD+D FK++ND +GH Sbjct: 347 EKMETLASKDPLTGISNRR-HLSSFGEKEVMRAFHYGTNLALIMFDLDLFKKVNDTYGHD 405 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+++ + + + +GR GGEEF +S +A ++A +R IE S + Sbjct: 406 VGDQLLIHIVEIARGLVREADLLGRYGGEEFVILLPQTSLSDAQLIAERIRSSIEISPLA 465 Query: 210 ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + SG SI +T S G+ S ++ +AD+ALY AK GRN+VV F + +N Sbjct: 466 LESGTSIPMTASFGVTSSLGSSDFSFESLCKKADEALYRAKAEGRNQVVTFLETDNE 522 >gi|212633062|ref|YP_002309587.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212554546|gb|ACJ27000.1| GGDEF domain protein [Shewanella piezotolerans WP3] Length = 395 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 31/210 (14%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 L+ L V +SIT +L + YI + F++Y D L+GL + A + + S Sbjct: 196 LMPELLSVSVSIT-ALAIVYILTVLTDSYFLAYR--------DELTGLASRRALYNLVLS 246 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 K S+ DID+FK+ ND +GH VGD+V+ ++ ++ V G R GGEEF Sbjct: 247 LGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLKLVASKISQVRGGGK-AFRYGGEEF--TI 303 Query: 185 LGSSEQEAAILA--NDLRKIIENSQINI-----------------SSGPSIHITISAGIA 225 + S + ++IL ++R+IIE+ I + S ++++TIS G++ Sbjct: 304 VFSRKDTSSILHFLEEVREIIEDYDITLRNEQRKQQTKAKRGKAQSQSKTVNVTISIGVS 363 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E H E + +ADQALY AKK GRN+V Sbjct: 364 EHQHGETFEQTLKKADQALYRAKKKGRNQV 393 >gi|312142851|ref|YP_003994297.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus'] gi|311903502|gb|ADQ13943.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus'] Length = 442 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 19/181 (10%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138 S ++ +L +I+++S D + G+ N S FI+ L Y+ LS++ +DID Sbjct: 267 SNEVITDLENKVAKITKISETDDMLGIYNRSKFINILEKEIYRSRRYDNDLSLIMYDIDC 326 Query: 139 FKQINDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 FK+INDN+GH VGD KV + DQ+ + + R GG+EF +S +++ Sbjct: 327 FKEINDNYGHQVGDEILIKVTKMIKDQIRKIDS----LARYGGDEFMIINPETSLEKSYQ 382 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 LA LRK E S+I S I+ S G+ E ++ I +++ RAD ALY AK++GRN+ Sbjct: 383 LAERLRK--EVSKIETEKVAS--ISCSFGVVELEAEDDIDSLLKRADDALYQAKENGRNK 438 Query: 255 V 255 V Sbjct: 439 V 439 >gi|261404460|ref|YP_003240701.1| diguanylate cyclase and metal dependent phosphohydrolase [Paenibacillus sp. Y412MC10] gi|261280923|gb|ACX62894.1| diguanylate cyclase and metal dependent phosphohydrolase [Paenibacillus sp. Y412MC10] Length = 618 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/194 (35%), Positives = 97/194 (50%), Gaps = 14/194 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128 I +S++L Y K+LF Y ++ + + D +GL NHS F I + Sbjct: 219 IGLSVMLSYS----FKQLFTMYKQVQEKAIKDQRTGLYNHSYFENLLEDEIKKAKTNETP 274 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGS 187 LS+ DID FK+ ND FGH GD ++ FL + L V T V R GGEEF G Sbjct: 275 LSLAMIDIDDFKKYNDQFGHLKGDMLLGFLGNYLKVESETAEVVASRFGGEEFTILMPGY 334 Query: 188 SEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245 + +A N LRK + ++ + + PS ++ SAG+A R S ++ ADQALY Sbjct: 335 DDHKARSFINRLRKKLNDTYFDGVEIFPSGCLSFSAGVASYRIDIHDKSQLVELADQALY 394 Query: 246 VAKKSGRNRVVCFS 259 AKK G+N V + Sbjct: 395 YAKKQGKNNVHVYG 408 >gi|85716309|ref|ZP_01047282.1| diguanylate cyclase [Nitrobacter sp. Nb-311A] gi|85696825|gb|EAQ34710.1| diguanylate cyclase [Nitrobacter sp. Nb-311A] Length = 354 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 9/187 (4%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 +S + + L S I S D L+GL N F ++ S E LS++ FDID Sbjct: 158 LSKTEIHNLQHSLEAIRAESMTDPLTGLGNRKYFDRAVADAVALAASEGEPLSLLMFDID 217 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK NDN+GH GD+V+ ++ L R GGEEFA ++ ++A +A+ Sbjct: 218 HFKSFNDNYGHLTGDQVLRLVAMSLKQNIKGQDITARYGGEEFAVVLPSTALKQALTVAD 277 Query: 198 DLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R+ + ++ S I +TIS G++ + +++ RAD LY AK+SGRNR Sbjct: 278 HVRRAVMAKELKKKSTGEILGRVTISIGVSMLRPGDTPDSLMERADACLYAAKRSGRNRA 337 Query: 256 VCFSDIE 262 VC +D E Sbjct: 338 VCETDPE 344 >gi|114561654|ref|YP_749167.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114332947|gb|ABI70329.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 641 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 104/186 (55%), Gaps = 14/186 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEK----LSIVFFDIDYFKQI 142 L+EL ++++ + ID L+G+ N SAF L G + + +S++ DID FK I Sbjct: 457 LRELNEVNQKLTEQNTIDSLTGVKNRSAFDRRLIAEGRISRRQQTPMSLLMIDIDKFKNI 516 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD I +++ L P V R GGEEFA + + A ++A +R+ Sbjct: 517 NDQYGHLSGDYTIKMIANTLCEYVKRPTDLVSRFGGEEFAIILPCTDIEGALLVAEQIRQ 576 Query: 202 IIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I I + +G +I +T+S G++E + P+ ++ +AD+ALY AK+SGRN+ VC+ Sbjct: 577 AISELTI-VHNGHTIPLTVSIGVSETIIESDEHPM-LLLEQADKALYKAKRSGRNK-VCY 633 Query: 259 SDIENN 264 +E + Sbjct: 634 YPLETD 639 >gi|304407404|ref|ZP_07389057.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] gi|304343845|gb|EFM09686.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] Length = 525 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 10/178 (5%) Query: 84 YISGSILKE---LFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDID 137 +++G+++K L + +S +R D L+GL N + +++ S +++ DID Sbjct: 348 HLAGAMMKAVQGLQTQADEMSLQARTDSLTGLANRTGLEEWLTERRSVPGGYTLLVIDID 407 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK +ND FGH GD+ + L+ L G V RLGGEEF +S +LA Sbjct: 408 HFKSVNDKFGHHTGDETLVHLAHILQAESGADDLVCRLGGEEFIVLLPAASLDTGTMLAE 467 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R+ E S I+ + P IT+S G+A+ + RADQALY AK++GRNR Sbjct: 468 RVRRQTERS-ISPTGSP---ITVSIGVAQCVDAVDFEQVFQRADQALYEAKRTGRNRT 521 >gi|294624059|ref|ZP_06702817.1| signal GGDEF domain protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601642|gb|EFF45621.1| signal GGDEF domain protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 194 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + +S + S N L+I FD+D+FK +ND +GHP GD V+ ++ Sbjct: 30 DGLTGLFNRAYIVSLLNKEVSSANRSRVALAIAMFDLDHFKSVNDTYGHPAGDTVLRTVA 89 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L P VGR GGEE A G +A L +DL + I + G + +T Sbjct: 90 SRLTENIRAPDQVGRYGGEELLAIMPGLQPPASARL-SDLLASVAGRPIELDGGIQLVVT 148 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S GIA E + ++ RAD+ALY AK GRNR+V Sbjct: 149 SSIGIAWLRPSETAAELLRRADKALYKAKHEGRNRIV 185 >gi|329928629|ref|ZP_08282483.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] gi|328937592|gb|EGG34007.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] Length = 618 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/194 (35%), Positives = 97/194 (50%), Gaps = 14/194 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128 I +S++L Y K+LF Y ++ + + D +GL NHS F I + Sbjct: 219 IGLSVMLSYS----FKQLFTMYKQVQEKAIKDQRTGLYNHSYFENLLEDEIKKAKTNETP 274 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGS 187 LS+ DID FK+ ND FGH GD ++ FL + L V T V R GGEEF G Sbjct: 275 LSLAMIDIDDFKKYNDQFGHLKGDMLLGFLGNYLKVESETAEVVASRFGGEEFTILMPGY 334 Query: 188 SEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245 + +A N LRK + ++ + + PS ++ SAG+A R S ++ ADQALY Sbjct: 335 DDHKARSFINRLRKKLNDTYFDGVEIFPSGCLSFSAGVASYRIDIHDKSQLVELADQALY 394 Query: 246 VAKKSGRNRVVCFS 259 AKK G+N V + Sbjct: 395 YAKKQGKNNVHVYG 408 >gi|218780527|ref|YP_002431845.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218761911|gb|ACL04377.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 589 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 10/192 (5%) Query: 75 SITISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124 ++ +SL LG ++ +E L + R+ +LS D L+GL N F + + S Sbjct: 396 TVLLSLALGDRINALQQEKRVLQVQEKRLMELSIRDELTGLFNKRWFSTKISSEIENCRA 455 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 ++ LS++ DID+FK+ ND +GH +GD V+ L + V R GGEEF Sbjct: 456 VDQPLSLIILDIDHFKRFNDAYGHAMGDTVLNQLGKIISVNVRERDVPCRYGGEEFTIIL 515 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 ++AA +A LR I SG I TIS G AE + +++ +ADQAL Sbjct: 516 PLIDLKKAAQIAERLRGIFSRFVFRTGSGEKIKATISLGAAELSPTDDAASLFEKADQAL 575 Query: 245 YVAKKSGRNRVV 256 Y AK SGR+RV+ Sbjct: 576 YRAKNSGRDRVI 587 >gi|330881084|gb|EGH15233.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 566 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 18/186 (9%) Query: 85 ISGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129 + GS+L F+S R+ Q LS D L+G N F + + + L Sbjct: 379 VDGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNL 438 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 SI+ DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ Sbjct: 439 SIIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRG 498 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +A LA LR+ + N I G +T S GIA E I T++ RAD +Y AK+ Sbjct: 499 SQAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQ 555 Query: 250 SGRNRV 255 +GR+RV Sbjct: 556 AGRDRV 561 >gi|90023333|ref|YP_529160.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952933|gb|ABD82948.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 476 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 3/170 (1%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFG 147 +EL + ++R +R+D L+ + N F L LS++ DID+FK +ND++G Sbjct: 290 RELSVKWSRAETQARLDPLTKIYNRRGFEERAIQLMRQKRTLSLLILDIDHFKYVNDHYG 349 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD+V+ S ++ + R+GGEEFA + + A ++A +R IE+++ Sbjct: 350 HDIGDEVLRQFSKKIAGMIRDSDVFARIGGEEFAVILADQNLELAGLMAERIRATIESTE 409 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +SS +I T+S G++ I + D+ LY AK GRN+V Sbjct: 410 LPVSSDNTIKYTVSIGVSSVSEGVDIHRWLKTTDKLLYQAKAQGRNQVAA 459 >gi|293392429|ref|ZP_06636751.1| GGDEF domain protein [Serratia odorifera DSM 4582] gi|291425083|gb|EFE98290.1| GGDEF domain protein [Serratia odorifera DSM 4582] Length = 482 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 9/178 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 R+ + D L+G L SA + E +S++ D+D+FK IND++GH + Sbjct: 299 RRLEHSASHDFLTGTLTRSALMRKTRELLEQKQRCKEAVSLLLIDVDHFKLINDSYGHVI 358 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+A L +GRLGGEEFA + +A + LR+ +E +QI+ Sbjct: 359 GDRVLANFIHLLRRELRPDQLLGRLGGEEFAIVMPRALAAQAVAMGEYLRRQVEKAQIDT 418 Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 + +TIS G+A E + ++ AD ALY AK GRNRV F+ + N+ Sbjct: 419 GDRAPLKLTISVGVASLAMNEDKSLEQLMNMADIALYRAKSLGRNRVEPFNVLSGNSV 476 >gi|220933286|ref|YP_002512185.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] gi|219994596|gb|ACL71198.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] Length = 451 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 8/158 (5%) Query: 106 IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+G+ N AF L +N L+++ +D+D FK IND++GH GDKVI + Sbjct: 293 IDQLTGVPNRQAFDERLAQEYSRWKRFNTPLALIMWDVDRFKLINDSYGHKAGDKVIRAV 352 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + +L V R GGEEF G+S Q+A +A +R I + G + I Sbjct: 353 AQKLKERIRETDMVARYGGEEFVMLLTGASGQDALAIAEKIRAEIAGLGFHF-RGERVPI 411 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TISAGIA + T AD+ALY AK +GRNR V Sbjct: 412 TISAGIALFAEGDTPETAFDNADRALYEAKNTGRNRCV 449 >gi|205373494|ref|ZP_03226297.1| integral membrane sensor signal transduction histidine kinase [Bacillus coahuilensis m4-4] Length = 721 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/123 (39%), Positives = 74/123 (60%), Gaps = 1/123 (0%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+DYFK+IND FGH GD+V+ ++S +L F +GR GGEEF A + E E+ Sbjct: 594 DMDYFKKINDTFGHMKGDEVLMYVSSKLNEAFRDKGIIGRYGGEEFIAILQNADEIESYT 653 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 A +LR I + + G +I +++S GI+ + IS ++ AD++LY AK +GRN Sbjct: 654 FAENLRMTILDHPFQLPEGITIPLSLSIGISTGIKSTKTISQLVQEADESLYYAKNNGRN 713 Query: 254 RVV 256 RV+ Sbjct: 714 RVI 716 >gi|83312400|ref|YP_422664.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947241|dbj|BAE52105.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Magnetospirillum magneticum AMB-1] Length = 466 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 21/214 (9%) Query: 60 GLEYILVENLSLVIISITISLLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSA 117 G++Y L + I++ +S +L ++ G +++L +R+SQ D L+ L N + Sbjct: 265 GIDYALT-----IKIALGLSAVLAVVAYWGWRMRKLSRELDRLSQ---TDNLTNLPNRTR 316 Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 ++ + LS++ D+D+FK+IND FGH VGDKV+ ++D + Sbjct: 317 LNLQFPIELARARRLGQGLSLIMIDVDHFKRINDEFGHLVGDKVLIAMADLVRRSVRAID 376 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 R GGEE S +A ILA +R+ + + + T+S G+A Sbjct: 377 LPARWGGEELVVLCPDSHLDQALILAERIRQAVRDHDFDTGR----RQTVSIGVATLGPS 432 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + I ++ RADQALY+ K SGR+RV +D+ + Sbjct: 433 DDIDQLLNRADQALYIGKSSGRDRVCSEADLTDT 466 >gi|323529056|ref|YP_004231208.1| PAS/PAC sensor-containing diguanylate cyclase [Burkholderia sp. CCGE1001] gi|323386058|gb|ADX58148.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1001] Length = 312 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 11/203 (5%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 L + +V + +TIS + ++S + +E + ++ + + D L+G+ N F + L Sbjct: 113 LTRDREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYADRDGLTGIANRRYFEARLQD 170 Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 Y +S++ FD+D+FK+IND FGH VGD V+ ++ ++ V GR GG Sbjct: 171 EYTRWQRYGGDMSVLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTI 236 EEFA + ++A +A +R I ++ + + G S+ +T S G A R + Sbjct: 231 EEFALLLPCTPLEDAMRVAEKIRCTIADTPVEV-QGTSVPVTASVGGAAARPGLPAYEVL 289 Query: 237 IYRADQALYVAKKSGRNRVVCFS 259 I AD ALY AK+ GRNR V + Sbjct: 290 INEADAALYSAKRQGRNRSVALT 312 >gi|254489701|ref|ZP_05102897.1| GGDEF domain protein [Methylophaga thiooxidans DMS010] gi|224465110|gb|EEF81363.1| GGDEF domain protein [Methylophaga thiooxydans DMS010] Length = 344 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 91/162 (56%), Gaps = 6/162 (3%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVI 155 + Q +R D L+GLLN AF L + + LS+ FDID FK++ND FGH +GDKV+ Sbjct: 180 VKQTARTDGLTGLLNRGAFNRELQNLCSQGDMVLSLALFDIDNFKRLNDTFGHVLGDKVL 239 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214 + + L R GGEE A L S+ +E+ ++A +R+ +S++ S Sbjct: 240 QYFATLLNDHRDDIHIAARYGGEEMAMIFLHSNLEESFLMAESIRQQFASSRLKKKGSEE 299 Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 SI IT+S GI+ + T++ RAD+ALY +K GRNRV Sbjct: 300 SIGQITVSVGISALQLGDTPLTLLERADKALYKSKADGRNRV 341 >gi|189423872|ref|YP_001951049.1| diguanylate cyclase [Geobacter lovleyi SZ] gi|189420131|gb|ACD94529.1| diguanylate cyclase [Geobacter lovleyi SZ] Length = 346 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 8/169 (4%) Query: 105 RIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 RID L+ L N + F L YNE S++ D+DYFK IND+ GH GD+++ Sbjct: 173 RIDGLTQLANRAYFDEKLLEMILLHQRYNEPFSLMMIDVDYFKNINDSHGHQAGDRILKG 232 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++ ++ F+ R GG+EFA + +S Q A +LA + I S+ I G Sbjct: 233 VAFKIKASLRESDFLARFGGDEFALILIKASLQPATVLAEKICTNIRESRF-ILDGTEFK 291 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 +T+S G+AE + +++ RAD+ALY+ K+ GRN V +E++ Sbjct: 292 VTLSIGVAEVHADDTPESLLQRADRALYLVKERGRNGVESKMHVESSEA 340 >gi|154248964|ref|YP_001409789.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1] gi|154152900|gb|ABS60132.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1] Length = 1195 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 99/177 (55%), Gaps = 11/177 (6%) Query: 88 SILKELFISYNR---ISQLSRIDCLSGLLNH---SAFISSL-GSYNEKLSIVFFDIDYFK 140 ++L+ELF R + + + ID L+GL N + FI+ L + +++ SI DID FK Sbjct: 1018 TLLQELFSGQLRGVILRERANIDSLTGLYNRWKFNQFINELFDTKSKEFSIFIADIDNFK 1077 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND +GH VGD V+ ++ L V R GGEEF S+ EAA L + +R Sbjct: 1078 KINDTYGHMVGDSVLKNIAKILKEHVRDEGLVARYGGEEFVGIVY-KSKYEAAKLCDTIR 1136 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + IE + I +TIS G+A+ KE ++ ++ ADQ LY AK++G+NRVV Sbjct: 1137 ENIEKESLKIFG---FRVTISIGMADVNEKENVTELLGLADQRLYKAKEAGKNRVVW 1190 >gi|315283255|ref|ZP_07871488.1| ggdef domain-containing protein [Listeria marthii FSL S4-120] gi|313613103|gb|EFR87012.1| ggdef domain-containing protein [Listeria marthii FSL S4-120] Length = 357 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 17/197 (8%) Query: 76 ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128 +TI+L++G I+ ++ K+LF Y + S L + LS + I+ + + + + Sbjct: 164 VTIALVIGVIAAGLMSNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDAGSRQ 223 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184 ++++ DIDYFK IND +GH GD ++ QL V+ G R GGEEF+ Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAVILKASTTDGSEAFRNGGEEFSIVL 279 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQA 243 L S +E + +A +RK E + I +G + ITIS G++ S +++ AD+A Sbjct: 280 LDCSIEEGSDVAERVRKETEENDFIIPNGQIVKITISVGVSGSKDGANTSEGLFKSADEA 339 Query: 244 LYVAKKSGRNRVVCFSD 260 LY AK +GRNR VC +D Sbjct: 340 LYKAKLTGRNR-VCIAD 355 >gi|158319665|ref|YP_001512172.1| diguanylate cyclase [Alkaliphilus oremlandii OhILAs] gi|158139864|gb|ABW18176.1| diguanylate cyclase [Alkaliphilus oremlandii OhILAs] Length = 356 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 24/227 (10%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97 FIAT I I ++ + + + Y L + I+S + +L YI + EL++ Sbjct: 144 FIATWILIRDVNMVF-NVVARYAL--------ATAIVSTVVYFVLSYIYRT--NELYL-- 190 Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ + + D L+GL N F +++ E LS++ DID+FK++ND FGH Sbjct: 191 -RLKEEATRDFLTGLYNVREFEKVTNELFATIVQRKENLSLLMIDIDFFKKVNDTFGHSS 249 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ LS + + V R GGEEF LG + A +A +RK +E+ I Sbjct: 250 GDLVLKQLSTIITSSCRSFDIVSRQGGEEFTVILLGCDHKTALEIAERIRKNVEDHLFII 309 Query: 211 SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I IT+S G++ +P +++ AD ALY AK++GRN V Sbjct: 310 DKNEEIKITVSIGVSSYPEVTNDP-HHLLHEADDALYFAKRNGRNLV 355 >gi|299541822|ref|ZP_07052145.1| diguanylate cyclase with PAS/PAC sensor [Lysinibacillus fusiformis ZC1] gi|298725560|gb|EFI66201.1| diguanylate cyclase with PAS/PAC sensor [Lysinibacillus fusiformis ZC1] Length = 514 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 12/187 (6%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEK------LSIV 132 LLL + + LKEL ++ QL+ D L+ + N AF +Y+E +++ Sbjct: 330 LLLIFTDITELKEL---QRQLEQLAFYDELTQIYNRRAFFQQCNQAYSEARESSSAFTVI 386 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK +ND +GH +GD+++ + V R GGEEF A S+ E Sbjct: 387 LMDIDHFKNVNDTYGHAIGDQLLVHVVKVCQSVLKNGELFARYGGEEFVLALKDSTLLEG 446 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251 LAN L +E+ + + G +I TIS G+AE +E + ++ AD+ALY AK++G Sbjct: 447 QALANVLCNSVESQPLMTAEG-AIRATISCGVAEGTKGQETLYQLLNNADKALYAAKQAG 505 Query: 252 RNRVVCF 258 RNRV F Sbjct: 506 RNRVHVF 512 >gi|302343664|ref|YP_003808193.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfarculus baarsii DSM 2075] gi|301640277|gb|ADK85599.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfarculus baarsii DSM 2075] Length = 581 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 88/180 (48%), Gaps = 8/180 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQIND 144 +L S + +L+R D L+GL N L + E+ LS++ D+D FK ND Sbjct: 402 DLAKSRSHFMELARRDGLTGLYNRRHAFEHLRRILAEHQEQARPLSLLMLDVDDFKAFND 461 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGHP GDKV+ L+ + R GGEEF SS +A +A +R E Sbjct: 462 TFGHPEGDKVLVGLAAAICQGVRARDTACRYGGEEFMVVLPDSSNADALKVAERIRDAFE 521 Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 ++ N + +T+S G A + + ++ RADQALY AK SG+NR V F D+ Sbjct: 522 QTRFNPGGFRPLSVTVSIGAASLAGAGDNLEALVGRADQALYAAKASGKNRTVSFDDLPQ 581 >gi|167624500|ref|YP_001674794.1| response regulator receiver modulated diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167354522|gb|ABZ77135.1| response regulator receiver modulated diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 415 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 8/164 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + + +D L+ + N F ++ + LS+ DID+FK++ND +GH VG Sbjct: 248 KLWEQANLDYLTNVFNRRYFFNFYQEKLTEVAQKQGSLSLALLDIDFFKKVNDTYGHDVG 307 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ + +L F V R+GGEEF G ++A L + R +E + I S Sbjct: 308 DEVLIEFASRLKQSFSQHFTVARIGGEEFVVGFKGLHIEKAYALIDRFRMQLEITPIETS 367 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G ++ IT+S G+ E H E + ++ RAD LY AK +GRN V Sbjct: 368 KG-ALTITVSTGVTEFGHDETVDELLKRADTGLYEAKSAGRNLV 410 >gi|260893166|ref|YP_003239263.1| diguanylate cyclase [Ammonifex degensii KC4] gi|260865307|gb|ACX52413.1| diguanylate cyclase [Ammonifex degensii KC4] Length = 615 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 16/194 (8%) Query: 83 GYISGSILKELFISYNRISQLSR----IDCLSGLLNH-------SAFISSLGSYNEKLSI 131 GY+S + I+ R+S+L+R ID L+ L N + + N SI Sbjct: 409 GYVS---ITAAMIANLRLSELNRRLSLIDPLTQLYNRRFLEEYLTHQVVEAQRLNRPFSI 465 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 +F D+D FK +ND +GH VGD + L+ + V R GGEEF A G+ + Sbjct: 466 LFIDVDQFKNVNDFYGHEVGDIALTLLAQTIKQNLREADAVVRYGGEEFIAVLPGTDLEG 525 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250 AA A +R+ + + I + SG +I +T+S G+A+ R P +I RAD+A+Y AK Sbjct: 526 AAQAAEKVRRAVAETPICLESGENIFLTVSIGVAQYRIGLNP-EEVIQRADEAMYQAKIK 584 Query: 251 GRNRVVCFSDIENN 264 G+N VV + + EN Sbjct: 585 GKNLVVAYHEGENK 598 >gi|333010824|gb|EGK30250.1| diguanylate cyclase domain protein [Shigella flexneri K-272] gi|333021323|gb|EGK40576.1| diguanylate cyclase domain protein [Shigella flexneri K-227] Length = 371 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 YN +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRYNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|229099841|ref|ZP_04230765.1| GGDEF domain protein [Bacillus cereus Rock3-29] gi|228683587|gb|EEL37541.1| GGDEF domain protein [Bacillus cereus Rock3-29] Length = 351 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 104/206 (50%), Gaps = 18/206 (8%) Query: 63 YILVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHS 116 YIL ++S+V++ + S+ GYI+ +L+ ELF + Q + ID L+GL N Sbjct: 147 YILFNDISVVVLYLISSITTGYITFVSANYVLQSNELF---QTMKQYATIDALTGLGNVR 203 Query: 117 AFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F + + N+ L ++ D D+FK +ND +GHP GD+V+ + L + P Sbjct: 204 QFDLEMNHHIGNKHMENDSLCLLLIDTDHFKYVNDTYGHPAGDEVLKQIGCILRGISTFP 263 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 V R GGEEFA L +R +E + G I IT+S GI+E + Sbjct: 264 DLVFRKGGEEFALLIPQRGLSYGIHLGEQIRIAVEKHSFQLLDGTKIKITVSVGISE--Y 321 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 K +I AD ALY +K++GRN+V Sbjct: 322 KGSQEQLIQAADDALYYSKRNGRNQV 347 >gi|120554090|ref|YP_958441.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120323939|gb|ABM18254.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 308 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 8/169 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I Q + D L+G+ N A +L + S++ D+D+FK INDN GH VGD Sbjct: 140 IEQTALTDSLTGIGNKRALDEALQRASAMADRHGAPWSLILCDLDHFKLINDNHGHVVGD 199 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++A +++L V R GGEEFA ++EQEA +A+ +R IE+ +++ Sbjct: 200 HILARTAEKLEQALRNSDTVYRFGGEEFAILLPHTNEQEARDVADRIRGAIESIRVDGGE 259 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 P + +T S G+A E + RAD+ALY AK +GRN F+ I Sbjct: 260 TP-LTVTASCGVAMHLTDEQPEQWLARADEALYRAKAAGRNCTRVFASI 307 >gi|118443867|ref|YP_878741.1| GGDEF domain-containing protein [Clostridium novyi NT] gi|118134323|gb|ABK61367.1| GGDEF domain protein, putative [Clostridium novyi NT] Length = 1804 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/130 (41%), Positives = 77/130 (59%), Gaps = 4/130 (3%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N+K SI+ FD+D+FK +ND FGH VGDKV+ + ++ GR GGEEF + Sbjct: 1497 NDKFSIIMFDLDHFKNVNDTFGHQVGDKVLNNVCGIVMKNLRDGDICGRYGGEEFISILP 1556 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQAL 244 G E +A +A +R +E+S+I P +TIS GI+ + + +I +ADQAL Sbjct: 1557 GIGESKALNIAERIRSAVEDSKILGEKHP---VTISIGISTYPQQAQLKRELIEKADQAL 1613 Query: 245 YVAKKSGRNR 254 Y+AK SGRNR Sbjct: 1614 YIAKDSGRNR 1623 >gi|218675284|ref|ZP_03524953.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56] Length = 355 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 97/184 (52%), Gaps = 18/184 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK-----LSIVFFDIDYFKQ 141 + KEL Y RI+ D L+ L N AF L + +N +++ DID FK+ Sbjct: 164 QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAVFNNPGMRPVTALLLADIDNFKK 219 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GHPVGDK++A ++ + +FV R GGEEFA G++ +E +A +R+ Sbjct: 220 INDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTVEEVTAIAERIRR 279 Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +E NS+ ++ GP IT S GI + E + + D ALY AK +GRN +V Sbjct: 280 TLETTPFKNSRTRVNYGP---ITASIGICMASNAEDAGELYSKTDIALYGAKNAGRNCIV 336 Query: 257 CFSD 260 + D Sbjct: 337 LYQD 340 >gi|258405249|ref|YP_003197991.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense DSM 5692] gi|257797476|gb|ACV68413.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense DSM 5692] Length = 769 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 9/164 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +++ +L+ D L+G+ N F + S Y LS++ +DID+FK+IND +GH + Sbjct: 597 SKLRELATRDSLTGVWNRRYFFELAARELESAQRYKHPLSLILYDIDHFKRINDTYGHMI 656 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ L+ + + R+GGEEFA + ++A +A + + + + I Sbjct: 657 GDEVLRQLTQLVGANLRNVDLLARVGGEEFAVLLPHTYLEQAHTVARRILRGVNEAVIRT 716 Query: 211 SSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253 +GP + +TIS G++ H + + ++I+ ADQALY AK GRN Sbjct: 717 EAGP-LQLTISIGMSSSAHADNCLESLIHDADQALYAAKNKGRN 759 >gi|298291182|ref|YP_003693121.1| diguanylate cyclase [Starkeya novella DSM 506] gi|296927693|gb|ADH88502.1| diguanylate cyclase [Starkeya novella DSM 506] Length = 726 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 11/164 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N ++ LS+V FDID FK+IND+FGH GDKV+ LS Sbjct: 561 DPLTGLYNRLRLKDVLPREMARADRTGSALSVVMFDIDRFKRINDSFGHATGDKVLVALS 620 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + R GGEEF ++ EA I+A LR+ I N + + + IT Sbjct: 621 RVAAGSLRATDHLVRWGGEEFLVVLPDANAAEARIVAEKLRQAIANHRFDEAG----RIT 676 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +S G+A+ E ++ +I RAD+ LY AK +GRNRV + N Sbjct: 677 VSFGVAQYAPGEVMADLIARADRTLYQAKANGRNRVEVAPTVLN 720 >gi|307312238|ref|ZP_07591874.1| diguanylate cyclase [Escherichia coli W] gi|306907740|gb|EFN38242.1| diguanylate cyclase [Escherichia coli W] gi|315059664|gb|ADT73991.1| predicted diguanylate cyclase [Escherichia coli W] gi|323379771|gb|ADX52039.1| diguanylate cyclase [Escherichia coli KO11] Length = 371 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DIDYFK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDYFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|34499590|ref|NP_903805.1| hypothetical protein CV_4135 [Chromobacterium violaceum ATCC 12472] gi|34105441|gb|AAQ61796.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 585 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 87/167 (52%), Gaps = 16/167 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++QL+R D L+GL N A L G +++ D+D+FK++ND GH G Sbjct: 418 QLAQLARNDALTGLHNRMAANEQLQEEHLRHGRSGAPYAVLLLDVDHFKRVNDTHGHDAG 477 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++D L FV R GGEEF + AA+LA +R +E SQ Sbjct: 478 DRVLRHIADILRRAARATDFVARFGGEEFLLLLPETDADGAAVLAEKIRASVEQSQ---- 533 Query: 212 SGPSI-HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + +T+S G+A +P + RADQALY AK +GRNRV Sbjct: 534 -APDVGRVTLSIGLATVVPADSQP-EMAVKRADQALYRAKAAGRNRV 578 >gi|323699238|ref|ZP_08111150.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio sp. ND132] gi|323459170|gb|EGB15035.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio desulfuricans ND132] Length = 883 Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 83/163 (50%), Gaps = 11/163 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 L+ D L+G N F + LG+ Y L+++ DIDYFK IND +GH GD V Sbjct: 721 LATTDALTGANNRHQFFA-LGAVEVQRAKRYALPLTVLMLDIDYFKSINDTYGHAAGDLV 779 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + LS + GRLGGEEFA + E A A LR+ + + + Sbjct: 780 LKALSASVSATLRASDIFGRLGGEEFAVILPQTDIDEGAEAAERLRETLAGLAVEVGD-E 838 Query: 215 SIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 SI T+S G+ C + + ++ RAD+ALY AK+ GRNRVV Sbjct: 839 SITFTVSMGVTRICAGDKTVEDVLNRADEALYKAKRMGRNRVV 881 >gi|90023288|ref|YP_529115.1| formamidopyrimidine-DNA glycolase [Saccharophagus degradans 2-40] gi|89952888|gb|ABD82903.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 435 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 9/165 (5%) Query: 103 LSRIDCLSGLLNHS----AFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 LS D L+G+ N ++ + L S N K+S++ DID+FK+IND GH +GD+V++ Sbjct: 273 LSTNDALTGIRNRHGVKLSYDAMLQSANPDTKISVILIDIDHFKRINDRRGHQMGDEVLS 332 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 SD L VGR GGEEF + ++ +A +LA +R + N+ + I Sbjct: 333 QFSDLLRRNTRENDIVGRWGGEEFIVVSAHTNLNQAELLAEKIRTTVSNTA--LGDNKPI 390 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN-RVVCFSD 260 +TIS G+ E E + + RAD+ LY AK+ GRN V F+D Sbjct: 391 MVTISCGVTEIQRPESLDAALARADKCLYSAKRGGRNCTVAQFND 435 >gi|261820424|ref|YP_003258530.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] gi|261604437|gb|ACX86923.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] Length = 532 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 15/170 (8%) Query: 97 YNRISQLS---RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150 + RI +LS D L+GLLN ++ S + +++ + DID+FK++ND +GH V Sbjct: 356 HKRIGKLSLQAHTDPLTGLLNRRGIYENVELILSKSNQVAAIVIDIDHFKRVNDTYGHNV 415 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI L+D + + R GGEEF A + ++A +A LRK +E + I Sbjct: 416 GDDVIRLLADNIKQGSRESDLICRTGGEEFLALLPDTDMKQATEIAERLRKKVEKMPLPI 475 Query: 211 SSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVC 257 +ITIS G+ C E I +++ AD ALY AK GRNRVV Sbjct: 476 PE----NITISLGVT--CFTPGTEQIDSVLKTADDALYQAKHEGRNRVVT 519 >gi|78485487|ref|YP_391412.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78363773|gb|ABB41738.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2] Length = 532 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 20/208 (9%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 L+++L+ L+IIS+ L+ +I I + + ++++ D L+GL N S F Sbjct: 337 LQHLLINEFLLLIISL---LVFFFIRNQIRQRRLLH-----KMAKTDNLTGLPNRSIFKR 388 Query: 121 SLGSY----NEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 +L N+K LS++FFDID+FK+IND +GH VGDKV+ ++ + Sbjct: 389 ALNENIKRSNKKQWPLSLIFFDIDHFKKINDTYGHLVGDKVLKKVARNIEDGLTHKDIFA 448 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF + Q+A +A LR+ +E + I IT S G+++ + Sbjct: 449 RWGGEEFVILLPNTDLQDAEKVAERLRQKLE-----AMTDFDITITSSFGVSDLRPDDTA 503 Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDI 261 + + R D+ LY +K+ GRNRV S + Sbjct: 504 ESFMQRGDEMLYRSKEQGRNRVTANSPL 531 >gi|78358127|ref|YP_389576.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220532|gb|ABB39881.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 361 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 95/174 (54%), Gaps = 12/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L +++ I +LSR D L+G N SA I Y LSI+ DID FK IN Sbjct: 164 EQLKKAFSDIEELSRTDPLTGACNRRKVIEFLSAEIDRSKRYGTPLSILSLDIDRFKAIN 223 Query: 144 DNFGHPVGDK-VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD +IAF + T +F GR GGEEF A ++ ++A I A +R+ Sbjct: 224 DTYGHAAGDDALIAFCRVCRQQLRKTDLF-GRTGGEEFVAVLPHAACRDAQISAERIRRH 282 Query: 203 IENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E QI+I+ + + T+S GIA E T++ RAD ALY AK +GRN V Sbjct: 283 VE--QIHITYNNACVRFTVSIGIAVHEAGENTDTLLRRADAALYRAKTAGRNTV 334 >gi|296446213|ref|ZP_06888160.1| diguanylate cyclase [Methylosinus trichosporium OB3b] gi|296256250|gb|EFH03330.1| diguanylate cyclase [Methylosinus trichosporium OB3b] Length = 734 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 13/174 (7%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+GL N ++ ++ G Y + LS+V FD+D+FK IND GH GD Sbjct: 564 LGQQAVTDPLTGLFNRLRIDQALASEMARAGRYGDPLSLVLFDVDFFKAINDAHGHQAGD 623 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + L+D + + R GGEEF GS A A LR +E +S Sbjct: 624 RALVRLADAARALVRRSDLLARWGGEEFILLTPGSDGAMARNAAEKLRAAVE----RLSF 679 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCFSDIENN 264 IT S G+ + + T++ RAD+ALY+AK +GRNRV V SD +N Sbjct: 680 EDIGKITCSFGVTQYVDGDTAETMVRRADRALYLAKLNGRNRVESVLESDASSN 733 >gi|149374977|ref|ZP_01892750.1| Putative diguanylate cyclase (GGDEF domain) [Marinobacter algicola DG893] gi|149360866|gb|EDM49317.1| Putative diguanylate cyclase (GGDEF domain) [Marinobacter algicola DG893] Length = 309 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 10/172 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I Q S DCL+G+ N A +L + E+ S++ D+D+FKQ+ND +GH VGD Sbjct: 140 IEQASLTDCLTGVPNKRALDDALSRASCLGDRHGEEYSLILCDLDHFKQVNDQYGHVVGD 199 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ + +L V R GGEEFA + E A + + +R+ I S I + Sbjct: 200 HMLKLAAAELEKAVRNSDSVYRFGGEEFAILLAHTDEVNAREVGDRIREFI--STIVVDC 257 Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 G + + +T S G+A R E + RAD+ALY AK GRN F+ I N Sbjct: 258 GDTNVTVTASCGVAMRLADETADQWLARADEALYRAKAHGRNCTRVFAAISN 309 >gi|85712056|ref|ZP_01043109.1| Phytochrome sensor diguanylate cyclase/phosphodiesterase [Idiomarina baltica OS145] gi|85694046|gb|EAQ31991.1| Phytochrome sensor diguanylate cyclase/phosphodiesterase [Idiomarina baltica OS145] Length = 689 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 11/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 +EL + R+ L D L+ + N +L + L+++ DID+FK++N Sbjct: 516 QELTEANQRLEHLVHTDALTQVWNRYHMEQTLEEEVKRCKRHGRDLAVILLDIDHFKRVN 575 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D++GH VGDKV+ +S+ + + GR GGEEF A + + A LA LR+ + Sbjct: 576 DDYGHDVGDKVLKLISEAIHQWLRSSDVFGRWGGEEFLIIAPETDLESANQLAERLRRRL 635 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 N Q + +T S G+AE E ++++ RAD ALY K+SGRN V Sbjct: 636 SNLQFDKVG----QVTASFGVAELLPSEDRNSLVKRADNALYQVKESGRNSV 683 >gi|311105212|ref|YP_003978065.1| diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310759901|gb|ADP15350.1| diguanylate cyclase, GGDEF domain protein 6 [Achromobacter xylosoxidans A8] Length = 484 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 15/206 (7%) Query: 67 ENLSLVIISITISLLLGYISGSIL--KELFISYNRISQLS---RIDCLSGLLNHSAFISS 121 + +L II +T +LLL ++ +L +E+ + +QL+ R D L+GL N AF + Sbjct: 276 DRRALFIIPVTTALLLSVVALIVLFRREMALRKAVETQLAIQARTDGLTGLANRRAFDET 335 Query: 122 LG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVG 173 L + E+ LS++F D D+FK+ ND +GH GD+++ L+ L P Sbjct: 336 LAREWQNARRERVPLSLLFLDADHFKRYNDRYGHQQGDQLLIALARVLKKKARRPRDLAA 395 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--E 231 R GGEEF +S Q A +A +R+ + ++ + +TIS G+A + + Sbjct: 396 RYGGEEFVVLLPNTSRQRAVEIAESIRRTVAGLKVPHEDAAAGIVTISVGVATSVPQADD 455 Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257 +++++ AD A+Y AK+SGRNRV Sbjct: 456 TLASLVEAADAAVYRAKESGRNRVAV 481 >gi|115523856|ref|YP_780767.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] gi|115517803|gb|ABJ05787.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] Length = 366 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 23/212 (10%) Query: 72 VIISITISLLLGYISGSILKELFI-------SYNRISQLSRIDCLSGLLNHSAFISSLGS 124 +++++ + LG +S S+ +L+ +Y I +L+ +D L+G N + L Sbjct: 146 LVLALGRCMFLGMVSASLRDKLYKRGVELKQAYETIEELAELDELTGSFNRRCIMRVLDD 205 Query: 125 Y-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV---GR 174 LSI D+D+FK+IND +GHP GD+V+ + + +F + GR Sbjct: 206 EIVHARRIGTPLSIALIDLDWFKRINDVYGHPAGDEVLKTFA---ITIFANIRAIDKFGR 262 Query: 175 LGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 GGEEF L ++ Q+AA+ L LR I+ + + S + +T+SAGIA E Sbjct: 263 YGGEEFLLI-LPATPQDAAVQLLERLRGIVADLDWSAFS-EGMLVTLSAGIATLTENETS 320 Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T++ RAD ALY AK +GRNR+ S + T Sbjct: 321 DTLLARADCALYEAKANGRNRIAASSPEASAT 352 >gi|120556685|ref|YP_961036.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120326534|gb|ABM20849.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 361 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126 +S +++ ++ G + EL ++L+ D L+G LN S L S Y Sbjct: 155 LSCLFAMIFAWLVGRLQAEL-------TRLATTDPLTGCLNRSQLADILNSQIQMRERYE 207 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 S+V D+DYFK IND +GH GDKV+ ++ ++ + R+GGEEF Sbjct: 208 RVSSLVLIDLDYFKTINDRWGHLAGDKVLKEMALRVRKRLRESDQLFRIGGEEFMVVLPE 267 Query: 187 SSEQEAAILANDLRKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQA 243 + +++A LA+ L +IS+ P I +T SA +AE E S + RADQA Sbjct: 268 TRQKDADTLAHQL-------LTSISARPFLDDIRVTASASVAEVTQGETWSVWLNRADQA 320 Query: 244 LYVAKKSGRNRVV 256 LY AK GRN+VV Sbjct: 321 LYEAKSRGRNQVV 333 >gi|229164361|ref|ZP_04292291.1| GGDEF domain protein [Bacillus cereus R309803] gi|228619104|gb|EEK76000.1| GGDEF domain protein [Bacillus cereus R309803] Length = 351 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 18/205 (8%) Query: 64 ILVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSA 117 IL +++S+V + + S + YI+ +L+ ELF + Q + ID L+GL N Sbjct: 148 ILFKDMSIVALYLVCSGVAAYITFISANYVLQSNELF---QTMKQYATIDALTGLGNVRQ 204 Query: 118 FISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 F + + N+ L ++ DID+FK +ND +GHP GD+V+ + L + P Sbjct: 205 FDLEMNRHIGNKRMKNDSLCLLLIDIDHFKCVNDTYGHPAGDEVLKQIGSILREISTFPN 264 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 R GGEEFA + +R ++EN + +G I IT+S GI+ ++ Sbjct: 265 LAFRKGGEEFALLIPKKGLTYGVSMGEQVRTVVENHPFQLLNGTKIKITVSVGIS--VYE 322 Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255 E I AD ALY +K++GRN+V Sbjct: 323 ESAEQFIQAADDALYYSKRNGRNQV 347 >gi|294497759|ref|YP_003561459.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM B1551] gi|294347696|gb|ADE68025.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM B1551] Length = 310 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 95/179 (53%), Gaps = 11/179 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L + ++ LS D L+GL N + L E LS + FDIDYFK ND Sbjct: 123 DLRKANKKLEMLSMKDGLTGLNNRRSLDKQLEIEWEYAQKEKEPLSFLLFDIDYFKAYND 182 Query: 145 NFGHPVGDKVIAFLSD-QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD+ + +++ VVF P F R GGEEF +++ EA +A +R+ + Sbjct: 183 TYGHIQGDECLKEVANIAKSVVFDEPAFFARYGGEEFGILLPRANQYEAIKMAEAIRQQV 242 Query: 204 ENSQ-INISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259 E I+ +S +TIS GI E P +I+++ADQALY AK++GRNR+ +S Sbjct: 243 EQRGIIHQASDLFKCVTISVGIMTVVPSENIPPISIVHQADQALYEAKRTGRNRISVYS 301 >gi|294142585|ref|YP_003558563.1| GGDEF domain-containing protein [Shewanella violacea DSS12] gi|293329054|dbj|BAJ03785.1| GGDEF domain protein [Shewanella violacea DSS12] Length = 624 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 103/182 (56%), Gaps = 13/182 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEK----LSIVFFDIDYFKQI 142 L+EL + ++++ + +D L+G+ N +AF L G + + ++++ DID FK I Sbjct: 443 LRELNEANQKLTEQATVDSLTGVKNRAAFDKRLLAEGRLSRRQQTPMALLMLDIDRFKSI 502 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 NDN+GH GD+ + ++ L P V R GGEEFA + E+ A +A +R+ Sbjct: 503 NDNYGHLAGDQALRLIAQTLKEQLKRPGDLVSRYGGEEFAIILPNTGEEGAMQVAELIRQ 562 Query: 202 IIENSQINIS-SGPSIHITISAGI-AERCHKEPIST-IIYRADQALYVAKKSGRNRVVCF 258 I S++ IS SI +TIS G+ AE ++ T ++ +AD+ALY AK GRNRV+ + Sbjct: 563 TI--SELPISWKKHSIPLTISIGVSAEIIERDQDPTKLLEQADKALYRAKNEGRNRVMVY 620 Query: 259 SD 260 S Sbjct: 621 SQ 622 >gi|163748729|ref|ZP_02155982.1| GGDEF domain protein [Shewanella benthica KT99] gi|161331839|gb|EDQ02643.1| GGDEF domain protein [Shewanella benthica KT99] Length = 621 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 19/205 (9%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---G 123 ENL ++ T+ L + L+EL + ++++ + ID L+G+ N +AF L G Sbjct: 423 ENLEQMVQERTLELEVA------LRELNEANQKLTEKATIDGLTGVKNRAAFDKRLLAEG 476 Query: 124 SYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGE 178 + + ++++ DID FK INDN+GH GD+ + ++ L P V R GGE Sbjct: 477 RLSRRQQTPMALLMLDIDNFKSINDNYGHLAGDQTLRLIAQILKEQLKRPGDLVSRFGGE 536 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER---CHKEPIST 235 EFA + E+ A +A +R+ I I SI +TIS G++ ++P + Sbjct: 537 EFAIILPNTGEEGAMQVAELIRQTISELSIRWKES-SISLTISIGVSAEIIDTEQDP-TQ 594 Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260 ++ +AD+ALY AK GRNRV+ +++ Sbjct: 595 LLDQADKALYRAKNEGRNRVMVYTE 619 >gi|119945057|ref|YP_942737.1| diguanylate cyclase [Psychromonas ingrahamii 37] gi|119863661|gb|ABM03138.1| diguanylate cyclase [Psychromonas ingrahamii 37] Length = 543 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 95/174 (54%), Gaps = 12/174 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQ 141 +LKE +++ Q++ ID L+ + N ++F + E K I+ DID+FK Sbjct: 372 LLKEALLTH----QMATIDHLTQVNNRASFFTYAEKETERSKRRPNKTCIMMIDIDHFKH 427 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GH VGDK+++ ++D + T RLGG+EF + + A LR+ Sbjct: 428 INDTYGHDVGDKLLSLVADNCLKCTRTIDVFARLGGDEFTLMMPDTDLVSGRLAAERLRQ 487 Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254 I+ Q+ ++ I +T S GI+ + ++ PI T + +AD+ALY+AK GRN+ Sbjct: 488 RIDELQLELTPDVIIKVTTSIGISVVKLNETPIETALIQADKALYLAKTGGRNQ 541 >gi|315123379|ref|YP_004065385.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913] gi|315017139|gb|ADT70476.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913] Length = 321 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 18/176 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPV 150 R+ L+ +D L+G N S+ Y E +L + D+D+FKQIND +GH V Sbjct: 153 KRLKNLALLDPLTGAGNRL----SMSHYFEVEIKDKSQLYLFLIDLDHFKQINDEYGHDV 208 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDKV+ L+ + F +V R+GGEEF+ + S Q A A +LR+ + N I Sbjct: 209 GDKVLVELATLFRITFAKG-YVFRVGGEEFSLMSNFDSAQSALAKAENLRQAVANKYIE- 266 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 ++G +I++T S G+ + ++ ++ +I +AD+ LY AK +GRN V FSDI N C Sbjct: 267 ANGITINLTASVGVV-KYQQQNLAELIAQADKQLYKAKDAGRNAV--FSDI--NLC 317 >gi|313895135|ref|ZP_07828692.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312976030|gb|EFR41488.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 599 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 23/261 (8%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF--YGLEYILVEN 68 +W CH+K P + + ++ + + F +F + L PF Y + + +V Sbjct: 317 LWSCHKKGNMYCRP-ILIAFAALSILAVLDGLSFQFRVFAWNTYLLPFGIYTVAFFIVR- 374 Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125 L++ L +S S+ ++ + +++ +D L+ N + F S++ + Sbjct: 375 --LILDRAANERYLSDLSASLESQV----DAVTKRMEVDPLTSCYNRNKFPSAVHDFMRI 428 Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 E S++ FDID+FK+IND +GH VGD V+ + + + R GGEEF Sbjct: 429 ARDTGEPFSLIMFDIDHFKRINDTYGHDVGDVVLVNFARTIKAFLDRRHVLIRWGGEEFI 488 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYR 239 L +A AN +R+ + +I+ PS +T SAG+ ++ I+ R Sbjct: 489 LLCLHYDGAQAQAFANVIREAVSEERIH----PSDQVTCSAGVGVWYGSDEDTADCIVKR 544 Query: 240 ADQALYVAKKSGRNRVVCFSD 260 AD ALY +K++GRNRV C D Sbjct: 545 ADTALYESKQNGRNRVTCEPD 565 >gi|290894265|ref|ZP_06557233.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071] gi|290556204|gb|EFD89750.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071] Length = 378 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 13/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N F + ++N LS++ DIDYFK++ND +GH VG+ Sbjct: 205 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 264 Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V++ S+ L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 265 GVLSTFSEMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 324 Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA R + P + ++ ADQALY AK++GRN+V Sbjct: 325 ASGSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 369 >gi|320529775|ref|ZP_08030853.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399] gi|320138014|gb|EFW29918.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399] Length = 605 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 23/261 (8%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF--YGLEYILVEN 68 +W CH+K P + + ++ + + F +F + L PF Y + + +V Sbjct: 323 LWSCHKKGNMYCRP-ILIAFAALSILAVLDGLSFQFRVFAWNTYLLPFGIYTVAFFIVR- 380 Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125 L++ L +S S+ ++ + +++ +D L+ N + F S++ + Sbjct: 381 --LILDRAANERYLSDLSASLESQV----DAVTKRMEVDPLTSCYNRNKFPSAVHDFMRI 434 Query: 126 ----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 E S++ FDID+FK+IND +GH VGD V+ + + + R GGEEF Sbjct: 435 ARDTGEPFSLIMFDIDHFKRINDTYGHDVGDVVLVNFARTIKAFLDRRHILIRWGGEEFI 494 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYR 239 L +A AN +R+ + +I+ PS +T SAG+ ++ I+ R Sbjct: 495 LLCLHYDGAQAQAFANVIREAVSEERIH----PSDQVTCSAGVGVWYGSDEDTADCIVKR 550 Query: 240 ADQALYVAKKSGRNRVVCFSD 260 AD ALY +K++GRNRV C D Sbjct: 551 ADTALYESKQNGRNRVTCEPD 571 >gi|297537711|ref|YP_003673480.1| response regulator receiver modulated diguanylate cyclase [Methylotenera sp. 301] gi|297257058|gb|ADI28903.1| response regulator receiver modulated diguanylate cyclase [Methylotenera sp. 301] Length = 550 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 7/169 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPV 150 + + + +++D L+GLLNH++ + L + ++++IV DID+FK IND +GHPV Sbjct: 374 FREMQRSTQMDGLTGLLNHASSKTKLAAMLRDLPLGQEMAIVMLDIDHFKSINDAYGHPV 433 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI L+ L + +GR GGEE+ G +AA++ + +R+ + Sbjct: 434 GDLVIRTLAYLLKGRLRSIDLIGRYGGEEYIVGLPGVDASQAAVIIDKIRQDFARFTHHY 493 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + G IH T SAG A + II AD AL AK+ GRNRV + Sbjct: 494 AGG-VIHATFSAGTASYPDLGSVFEIIEAADNALLQAKRLGRNRVEQYQ 541 >gi|42525644|ref|NP_970742.1| GGDEF domain-containing protein [Treponema denticola ATCC 35405] gi|41815655|gb|AAS10623.1| GGDEF domain protein [Treponema denticola ATCC 35405] Length = 371 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 12/201 (5%) Query: 58 FYGLEYILVENL-SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 F E ++EN+ SL I+I S LL + I+ L + + + L+ H Sbjct: 172 FTDYEKNIIENIASLAAIAINNSQLLEMTTTDIMTHLKLKHY---------FFTLLMEHL 222 Query: 117 AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 I+S G E LSI+ DID+FK IND +GH GD V+ ++ + R G Sbjct: 223 YTINSSGEKKETLSILMIDIDFFKNINDTYGHAAGDIVLEEVAKIIKSCTRNADTAARYG 282 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIST 235 GEEF +S A +A +RK +E I + G I++TIS G++ E + Sbjct: 283 GEEFIVMLNNTSASAAMAVAERIRKSVEEKSI-MYDGKKINVTISIGVSSYNFDLESAKS 341 Query: 236 IIYRADQALYVAKKSGRNRVV 256 I+ RAD+ALY +K++GRNRV Sbjct: 342 IVERADKALYESKQNGRNRVT 362 >gi|46201308|ref|ZP_00055321.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 554 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G+ N F + + + + DID+FK+IND +GHPVGD Sbjct: 389 LRRLATTDVLTGIFNRRHFMEMARNEVDRARRHGRPMVALMLDIDHFKRINDTYGHPVGD 448 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 I L+D + +GRLGGEEFA + A ++A LR + +I Sbjct: 449 VAIKALADVCTEIVRHEDVLGRLGGEEFAIVLTETDLDGALLVAERLRLAVAAIRIPAEQ 508 Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 G + T S G+AER + I +++ RAD ALY AK+SGRN+V Sbjct: 509 G-IVAFTTSIGVAERLETDTTIDSMLSRADMALYSAKRSGRNKV 551 >gi|323138821|ref|ZP_08073885.1| response regulator receiver modulated diguanylate cyclase [Methylocystis sp. ATCC 49242] gi|322395969|gb|EFX98506.1| response regulator receiver modulated diguanylate cyclase [Methylocystis sp. ATCC 49242] Length = 457 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ +D L+GL N S L S E LS++ DID+FK +ND +GH GD+V Sbjct: 290 ELAVVDALTGLNNRRFLESHLASALEHAAHNGRPLSLMILDIDHFKSVNDTYGHDAGDEV 349 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ--INISS 212 + + ++ V V RLGGEEF + A +A +R +E Q I+ ++ Sbjct: 350 LKVFAQRIKRVVRGADLVCRLGGEEFVVVMPDTPLVVAEKVAERVRAAVEGGQFPIDPAA 409 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +I +T S G+AER ++ RAD+ALY +K SGRNRV + Sbjct: 410 TRTIPVTTSIGLAERGADANADALLRRADKALYGSKASGRNRVTAAA 456 >gi|307294699|ref|ZP_07574541.1| diguanylate cyclase with GAF sensor [Sphingobium chlorophenolicum L-1] gi|306879173|gb|EFN10391.1| diguanylate cyclase with GAF sensor [Sphingobium chlorophenolicum L-1] Length = 331 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 12/176 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 L L + + +++ D L+G L AF++ + + S++ FDID+FK+I Sbjct: 149 LAALVVEQLELRRIAERDHLTGALTRRAFLTEMNRAIALFERHERPASLLLFDIDHFKRI 208 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND GHP GD+VI ++ +L P +GRLGGEEF ++E++AA A + Sbjct: 209 NDTHGHPAGDQVIRGIA-RLCTGLQRPSDSLGRLGGEEFGILLPETAEEDAARAAQRFCE 267 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256 I ++ I P + +T+S G+AE P + + AD ALY AK+SGRNRV Sbjct: 268 AIAAAE--IPGPPPLRVTVSFGVAELRGDWPTGESWLAVADMALYEAKRSGRNRVA 321 >gi|295400309|ref|ZP_06810288.1| diguanylate cyclase and metal dependent phosphohydrolase [Geobacillus thermoglucosidasius C56-YS93] gi|294977584|gb|EFG53183.1| diguanylate cyclase and metal dependent phosphohydrolase [Geobacillus thermoglucosidasius C56-YS93] Length = 614 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 12/192 (6%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137 I ++ ++ Y +S+ + D L+GL NH F L + ++ D+D Sbjct: 213 ILSAVFRKFLYLYQEVSERANKDHLTGLYNHGYFKEMLNEQFRDAKKLKQPFTLALLDLD 272 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 FK+ ND GH GDK++ F + L V GT R GGEEFA G++++EA Sbjct: 273 DFKKYNDRNGHLQGDKLLQFFGELLKKAVDGTDFVAARYGGEEFAILMPGTTKEEAFSFL 332 Query: 197 NDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254 + LRK I ++ + + P ++ S GIAE S +I++ADQALY AK G+N Sbjct: 333 DRLRKEINDTYFSGVEHVPYRCLSFSCGIAEMERSMYDSGELIHKADQALYYAKAQGKNN 392 Query: 255 VVCFSDIENNTC 266 V + E+N C Sbjct: 393 VQIYE--EHNIC 402 >gi|163782280|ref|ZP_02177278.1| hypothetical protein HG1285_05820 [Hydrogenivirga sp. 128-5-R1-1] gi|159882313|gb|EDP75819.1| hypothetical protein HG1285_05820 [Hydrogenivirga sp. 128-5-R1-1] Length = 620 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 23/204 (11%) Query: 74 ISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNH----------SAF 118 + + + +L+ YI G + + + ++ + Q S ID L+GL N SA Sbjct: 413 MDVFVRMLIPYIKGYLQEASPVLESKSLMELLQQQSYIDQLTGLYNRRFLDEIADKLSAQ 472 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 + G+ L I+ DIDYFKQIND +GH VGD+V+ ++ + +V R GGE Sbjct: 473 VKRRGT---SLGILMIDIDYFKQINDKYGHDVGDRVLKEIASIIKSSVREADYVIRFGGE 529 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPIST 235 E + E A +A +R+ IEN I IS G I T+S G++E C + Sbjct: 530 EILVLLVDVREGTAKKVAEKIRRAIENKVIEISGG-VIKKTVSIGVSEFPKDCDGKFWQC 588 Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259 I + AD ALY AK+ GRNRVV F+ Sbjct: 589 IKF-ADVALYRAKEEGRNRVVRFT 611 >gi|312111165|ref|YP_003989481.1| diguanylate cyclase and metal dependent phosphohydrolase [Geobacillus sp. Y4.1MC1] gi|311216266|gb|ADP74870.1| diguanylate cyclase and metal dependent phosphohydrolase [Geobacillus sp. Y4.1MC1] Length = 614 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 12/192 (6%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDID 137 I ++ ++ Y +S+ + D L+GL NH F L + ++ D+D Sbjct: 213 ILSAVFRKFLYLYQEVSERANKDHLTGLYNHGYFKEMLNEQFRDAKKLKQPFTLALLDLD 272 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 FK+ ND GH GDK++ F + L V GT R GGEEFA G++++EA Sbjct: 273 DFKKYNDRNGHLQGDKLLQFFGELLKKAVNGTDFVAARYGGEEFAILMPGTTKEEAFSFL 332 Query: 197 NDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254 + LRK I ++ + + P ++ S GIAE S +I++ADQALY AK G+N Sbjct: 333 DRLRKEINDTYFSGVEHVPYRCLSFSCGIAEMERSMYDSGELIHKADQALYYAKAQGKNN 392 Query: 255 VVCFSDIENNTC 266 V + E+N C Sbjct: 393 VQIYE--EHNIC 402 >gi|145297768|ref|YP_001140609.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850540|gb|ABO88861.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 340 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 91/176 (51%), Gaps = 13/176 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 +KEL + N +L+ D L+ LLN AF I L + S++ DID FK ND + Sbjct: 165 IKELREALNETRKLANEDALTSLLNRRAFDLEIDGLIRSKQTFSLILSDIDRFKNFNDEY 224 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKI 202 GH +GD+V+ S +L + RLGGEEFA L S Q +A LR+ Sbjct: 225 GHLLGDQVLRAFSKRLRETCKEGVTAYRLGGEEFALLVPMRNLALSRQ----MAESLRRA 280 Query: 203 IENSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IE I + SG I HIT S G+ E +E ++ R D+ LY AK+ GRNRV+ Sbjct: 281 IEKMSILDRKSGRRIDHITASFGVGEYNGQETGDALVERTDKLLYKAKELGRNRVM 336 >gi|78777843|ref|YP_394158.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78498383|gb|ABB44923.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM 1251] Length = 580 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 12/172 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQIN 143 EL +Y ++ QL+ D L+ + N +F++ S E+ S++ DID+FK+IN Sbjct: 410 ELRDAYEKMRQLANTDSLTQINNRFSFLNQFNSLLERYSKESKAEFSLIMIDIDFFKKIN 469 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D++GH VGD VI ++ GR+GGEEF L +S + A A +RK I Sbjct: 470 DSYGHHVGDYVIVEVTKLTKACLRESDIFGRVGGEEFMVLLLHTSLEAAKETAQRIRKTI 529 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + H T+S G+ +KE + ++ R D ALY AK GRNRV Sbjct: 530 DEYKFEFIG----HATVSIGVISYDNKEKSADMLKRVDIALYEAKNGGRNRV 577 >gi|189423670|ref|YP_001950847.1| diguanylate cyclase with GAF sensor [Geobacter lovleyi SZ] gi|189419929|gb|ACD94327.1| diguanylate cyclase with GAF sensor [Geobacter lovleyi SZ] Length = 669 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 11/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + ++ +RID L+G+ N F + YN LS++ D+D+FKQIN Sbjct: 499 QELKHANELLATEARIDFLTGIYNRRMFDGLLVAETARACRYNSPLSLIMLDLDHFKQIN 558 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD V+ +++ + + R GGEEF + +AA+LA LR +I Sbjct: 559 DTQGHAAGDHVLQKVAELISGRIRSHDIFSRWGGEEFVILTPKNDTAQAAVLAEILRDMI 618 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E Q + +G + +T S G+ EP I RAD ALY AK +GRNRV Sbjct: 619 E--QYDFGNG--LRLTCSFGVTRHICGEPAEVFIERADTALYQAKHNGRNRV 666 >gi|313682413|ref|YP_004060151.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313155273|gb|ADR33951.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 549 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 104/218 (47%), Gaps = 23/218 (10%) Query: 55 LTPFYGLEYILVEN-LSLVIISITI--SLLLGYISGSILK---------ELFISYNRISQ 102 L PFY L++ + + + + I S T+ S+ + GS K E+ + Sbjct: 330 LWPFYLLDHSDIRHKVQMTIDSQTLFFSIKARRLEGSENKVLVELSDITEVETQKKSFEK 389 Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL+N F ++S E LS++ FDID+FK +NDNFGH +GD + Sbjct: 390 LAITDKLTGLINRFQFDILCAHTLNSAKRDREPLSLIMFDIDFFKNVNDNFGHNIGDITL 449 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + + R GGEEF S +A LA DLR IEN Sbjct: 450 RHTAKTIAKRLRSSDIFARWGGEEFMILLPKSGYDDAMKLAEDLRSCIENEVFEAVG--- 506 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 HITIS G+A + ++ RAD+ALY+AK GRN Sbjct: 507 -HITISFGVAVMEPNDDEASFQQRADKALYMAKNQGRN 543 >gi|94967235|ref|YP_589283.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345] gi|94549285|gb|ABF39209.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345] Length = 453 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 97/186 (52%), Gaps = 22/186 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 KEL + ++ +LS D L+GL N F ++L N +S++ D+D FK +N Sbjct: 267 KELKEAVAKLEELSTRDGLTGLYNRRFFDTTLTAECKRAARANYPISLLIIDVDCFKALN 326 Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D++GH VGD + + L V T V R GGEEFA +SE+ A + ++R+ Sbjct: 327 DHYGHLVGDDCLQKVGKSLASAVRRTSDVVARYGGEEFALILPNTSEESATTIGENIRRA 386 Query: 203 I---ENSQINISSGPSIHITISAGIAERCHKEPIST---------IIYRADQALYVAKKS 250 + E + N ++GP +T+S G+ R P S+ II AD+ALY AK+ Sbjct: 387 VLGLEIANANSTAGP--FVTLSVGVCTRRPSHPRSSEDILVTTNEIIRAADEALYRAKRE 444 Query: 251 GRNRVV 256 GRNRV+ Sbjct: 445 GRNRVL 450 >gi|91793870|ref|YP_563521.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91715872|gb|ABE55798.1| response regulator receiver modulated diguanylate cyclase [Shewanella denitrificans OS217] Length = 407 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 12/174 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQI 142 + ++K L+ NR D L+ + F S +E+ S+ DID+FK++ Sbjct: 241 AQDMMKMLWEKANR-------DFLTKVFTRRYFFSHYQDEHEEQGCFSLALLDIDFFKKV 293 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH VGD+V+ + +L FG V R GGEEF A G ++ L R+ Sbjct: 294 NDTHGHDVGDEVLMVFASRLTEAFGHKFTVARFGGEEFVVAFKGLDIEKTITLMEAFRQH 353 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E + S+G I +T S G+A E I ++ RAD+ALY AK+ GRNR+V Sbjct: 354 NEQKSVKTSAGELI-VTFSCGLAA-FGDELIDDVLIRADEALYEAKQQGRNRIV 405 >gi|27378152|ref|NP_769681.1| hypothetical protein bll3041 [Bradyrhizobium japonicum USDA 110] gi|27351299|dbj|BAC48306.1| bll3041 [Bradyrhizobium japonicum USDA 110] Length = 385 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL +Y RI +L+ +D L+G N + L + +K +I D+D+FK+IND Sbjct: 213 ELKAAYQRIEELAELDELTGSYNRRCIMRLLDAEMDKSRRASTSCAIALIDLDWFKRIND 272 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GHP+GD+V+ + + GR GGEEF + + A+ + LR I+ Sbjct: 273 AHGHPIGDEVLRTFAITIFANIRPTDCFGRYGGEEFLLLLPDTDGEAASRMLERLRSIVA 332 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + S P + +TISAG+ + T + RAD ALY AK GRNR+ Sbjct: 333 DLDWSAFS-PGMRVTISAGVVTLRDVDTADTFLARADSALYSAKAQGRNRI 382 >gi|91224261|ref|ZP_01259524.1| GGDEF family protein [Vibrio alginolyticus 12G01] gi|269965490|ref|ZP_06179608.1| GGDEF family protein [Vibrio alginolyticus 40B] gi|91191172|gb|EAS77438.1| GGDEF family protein [Vibrio alginolyticus 12G01] gi|269829853|gb|EEZ84084.1| GGDEF family protein [Vibrio alginolyticus 40B] Length = 337 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 5/162 (3%) Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + Q + D LS L N AF +SSL + N+ ++++ DID+FK NDN+GH GD V+ Sbjct: 174 VQQDALFDGLSNLYNRRAFDKDLSSLIASNQAMTLIMLDIDHFKSFNDNYGHLFGDTVLK 233 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPS 215 ++ +L + R GGEEFA S + A A+ LR++IE +I + SG Sbjct: 234 AIARRLQQSCRDGICAYRFGGEEFALIVPNKSLRIARQYADTLRRMIEKLRIRDKRSGTQ 293 Query: 216 IH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +H IT S G+AE + +I +AD+ LY AK+ GRNRV+ Sbjct: 294 VHSITASFGVAEFEPGDTPEALINKADKQLYEAKQLGRNRVM 335 >gi|296100762|ref|YP_003610908.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055221|gb|ADF59959.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 415 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 14/182 (7%) Query: 84 YIS-GSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSY----NEKLSIVFFD 135 Y+S G + E + + + +D L+GL N + A +S S+ E +S++ D Sbjct: 237 YVSVGKDVTERLREEQALRESATVDQLTGLFNRNHGKALLSEAYSFTLSREEPMSLILCD 296 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FKQIND+FGHPVGD+++A +S L V R GGEEF ++ AA L Sbjct: 297 IDHFKQINDSFGHPVGDQILAQVSGLLRKSVRGNDRVIRWGGEEFLILLENCTDMVAAEL 356 Query: 196 ANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 A LR I + Q N+ +T+S G+A KE + +I R D+ALY +K++GRN+ Sbjct: 357 AERLRLRIASEQFQNVG-----KVTVSLGVASLFQKESLEQLISRCDEALYKSKRNGRNQ 411 Query: 255 VV 256 + Sbjct: 412 LT 413 >gi|226224515|ref|YP_002758622.1| GGDEF domain protein [Listeria monocytogenes Clip81459] gi|225876977|emb|CAS05686.1| GGDEF domain protein [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 378 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N F + ++N LS++ DIDYFK++ND +GH VG+ Sbjct: 205 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 264 Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 265 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 324 Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA R + P + ++ ADQALY AK++GRN+V Sbjct: 325 ASSSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 369 >gi|330957430|gb|EGH57690.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 219 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 67/180 (37%), Positives = 95/180 (52%), Gaps = 18/180 (10%) Query: 88 SILKELFISYNRISQL---SRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDID 137 SI ++ R QL + D L+GL N A I++ S++ DID Sbjct: 42 SISPDVTTRMGREQQLLEFAHSDPLTGLDNRRAAEHTLERLINTTRVSGRPFSLIICDID 101 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF--VGRLGGEEFAAAALGSSEQEAAIL 195 +FKQ+ND +GHP GD V+ ++D ++ MF R GGEEF SS +AA L Sbjct: 102 HFKQVNDLYGHPAGDSVLKSVAD--ILKHQVRMFDVAARWGGEEFLVLVADSSLNQAAEL 159 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 A LRK + + ++ + ITIS G+AE E +++I RAD+ALY AK+ GRNRV Sbjct: 160 AERLRKGVASLELTETGS----ITISLGVAELESGETAASLIQRADKALYQAKRLGRNRV 215 >gi|89092332|ref|ZP_01165286.1| histidine kinase [Oceanospirillum sp. MED92] gi|89083420|gb|EAR62638.1| histidine kinase [Oceanospirillum sp. MED92] Length = 619 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 81/161 (50%), Gaps = 14/161 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+GLLN F S+ E L+I DIDYFK+IND H VGD V+ Sbjct: 458 DPLTGLLNRRGF--SIAGNKEWQYHLRTRNPLTIAMIDIDYFKRINDEHSHSVGDDVLVE 515 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L+ L V R+GGEEF A L EA I LR++IE+S + S+ IH Sbjct: 516 LARHLTEHMRQSDLVARIGGEEF-ALILNQPLPEAEIGLERLRELIEHSPVT-SADEQIH 573 Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 TIS G E C + + + AD LY AK+ GRNRVV Sbjct: 574 YTISIGAVEACRRFISLEAALDAADNNLYAAKRRGRNRVVS 614 >gi|309783283|ref|ZP_07677995.1| YaiC/YhcK/ArdA family protein [Ralstonia sp. 5_7_47FAA] gi|308917952|gb|EFP63637.1| YaiC/YhcK/ArdA family protein [Ralstonia sp. 5_7_47FAA] Length = 364 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 122/258 (47%), Gaps = 35/258 (13%) Query: 28 MIYFSIFFSIFIATVIFIANIFLFYIGL---------------TPFYGLEYILVENLSLV 72 +++F++ S+ + T+ + I GL T GL + ++ ++ Sbjct: 100 LMHFNLLPSVMLLTLTMVDKITTGIRGLWVRALWVMLAAGVASTAVMGLHWAPETSMRVI 159 Query: 73 IISITI----SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS-------AFISS 121 + + + +L + +S ++++ + +L R+D L+GL A + Sbjct: 160 VACLPVMSLHTLSVSAVSYQLIRQSARQNQMLDELRRVDALTGLFGRGHWQEQAEAALRR 219 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF---VGRLGGE 178 + +E ++ DID+FK+IND +GH VGD+VI L+ VV G GR GG+ Sbjct: 220 HHTTDEPACMLMLDIDHFKEINDAYGHTVGDEVIRALAH---VVRGNVRAGDCAGRYGGD 276 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTII 237 EFA G ++A +A +R+ E + + S P + IT S G+A H+ + I Sbjct: 277 EFAIVLPGMHARDALAIAQRIREQTEG--VRLRSLPELRITSSIGVAPADHRHSSLRAWI 334 Query: 238 YRADQALYVAKKSGRNRV 255 AD ALYVAK GRN+V Sbjct: 335 DAADAALYVAKNGGRNQV 352 >gi|83647423|ref|YP_435858.1| response regulator [Hahella chejuensis KCTC 2396] gi|83635466|gb|ABC31433.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 313 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 88/165 (53%), Gaps = 11/165 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N AF +S Y KLS++FFDID+FK++ND +GH GD ++ L+ Sbjct: 143 DSLTGVANKRAFDYQLHREVSLATRYKYKLSMLFFDIDHFKKVNDTYGHAAGDALLQQLA 202 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHI 218 + R GGEEF A L +E E A +A LR+ + N+ G +I Sbjct: 203 KVVQDNCRDSDLCFRFGGEEF-AMLLAKTETEGAYAIAERLREAVANTAFQ-HEGHTISF 260 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VCFSDIE 262 TIS G+A +E S + RADQALY AK +GRN+ + D E Sbjct: 261 TISIGVATYDGEENRSDFLERADQALYDAKHAGRNKTKIAHQDQE 305 >gi|75675850|ref|YP_318271.1| diguanylate cyclase [Nitrobacter winogradskyi Nb-255] gi|74420720|gb|ABA04919.1| diguanylate cyclase [Nitrobacter winogradskyi Nb-255] Length = 354 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 9/176 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148 S I S D L+GL N F ++ S E LS++ FDID+FK NDN+GH Sbjct: 169 SLEAIRAESMTDPLTGLGNRKYFDRAVADAVALAMSEGEPLSLLMFDIDHFKSFNDNYGH 228 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ ++ L R GGEEFA ++ ++A +A+ +R+ + ++ Sbjct: 229 LTGDQVLRLVAMSLKQNIKGQDITARYGGEEFAVVLPSTALKQALTVADHIRRAVMAKEL 288 Query: 209 NISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 S I +TIS G++ + +++ RAD LY AK+ GRNR +C +D E Sbjct: 289 KKKSTGEILGRVTISIGVSMLRPGDTPDSLMERADACLYAAKRGGRNRAICETDPE 344 >gi|16765323|ref|NP_460938.1| inner membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993561|ref|ZP_02574655.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|20140631|sp|Q8ZNT5|YEDQ_SALTY RecName: Full=Cellulose synthesis regulatory protein gi|16420521|gb|AAL20897.1| putative inner membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205328369|gb|EDZ15133.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|267993975|gb|ACY88860.1| putative inner membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158500|emb|CBW18010.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912976|dbj|BAJ36950.1| putative inner membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224631|gb|EFX49694.1| hypothetical protein SEE_03090 [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130265|gb|ADX17695.1| putative inner membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988875|gb|AEF07858.1| putative inner membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 570 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 20/206 (9%) Query: 74 ISITISLLLGYISGSIL----------KELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 ISI ++LL G + +L K +F+ N + + D L+ L N A Sbjct: 358 ISIALTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKAS 417 Query: 124 S----YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+G Sbjct: 418 RLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVG 477 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234 GEEF G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE Sbjct: 478 GEEFCIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFE 537 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260 + AD+ LY AK+SGRNR +C SD Sbjct: 538 QLQSLADKRLYYAKQSGRNR-ICASD 562 >gi|325971350|ref|YP_004247541.1| diguanylate cyclase [Spirochaeta sp. Buddy] gi|324026588|gb|ADY13347.1| diguanylate cyclase [Spirochaeta sp. Buddy] Length = 340 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/184 (35%), Positives = 99/184 (53%), Gaps = 13/184 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133 LL I+ ++K N++ + S D L+GL N F +L S N L I+ Sbjct: 158 LLSTIANHLIKT---QINQLQESSIRDHLTGLFNRRYFEETLKNKLKRVQSVNYSLGILL 214 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+DYFK+ ND +GH GD V+ LS+ ++ F + + R GG+EFA + ++E Sbjct: 215 LDVDYFKRFNDTYGHDAGDAVLIELSNIMLHHFDISISICRYGGDEFAILLPKTQKEELM 274 Query: 194 ILANDLRKIIENSQINISSGPSI-HITISAGIAERCH-KEPISTIIYRADQALYVAKKSG 251 +LA L K + N + + G S+ +TIS G A H E I+ I RADQALY AK+ G Sbjct: 275 LLAETLVKKVRN-HVVMYKGKSLGSMTISCGCAIYNHTTEDITEFIKRADQALYQAKEKG 333 Query: 252 RNRV 255 +++V Sbjct: 334 KDQV 337 >gi|89093140|ref|ZP_01166090.1| hypothetical protein MED92_03647 [Oceanospirillum sp. MED92] gi|89082436|gb|EAR61658.1| hypothetical protein MED92_03647 [Oceanospirillum sp. MED92] Length = 610 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 7/163 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++++ D L+G LN A S+ KL + D+DYFK+IND FGH VGD Sbjct: 446 LTEMASHDPLTGCLNRRALFSAAREELRRASRSGSKLCVCLMDLDYFKRINDRFGHQVGD 505 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ S + GR+GGEEFA +GS + A +A +R + + Sbjct: 506 NVLREFSSVVNSCLRVEDKFGRIGGEEFAVLLIGSGLESAVEVAERIRMEVMKIALQGIE 565 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G++E EP + RAD+ +Y AK GRN+V Sbjct: 566 HEDLEVTVSIGVSEWAEVEPFEQALSRADEKMYKAKNMGRNQV 608 >gi|152995952|ref|YP_001340787.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150836876|gb|ABR70852.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 365 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 8/183 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVF--FDIDYFKQ 141 ++K L + + L+ +D L+GL N ++ S + S VF D+D+FK+ Sbjct: 183 VIKRLKSVNSHLRTLAEMDELTGLSNRRKVLADAVNIFADSVINRESCVFAIVDLDHFKK 242 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH GD V+A +S + V + +GR GGEEF +S ++A ++ +R+ Sbjct: 243 INDTFGHEAGDLVLAKVSAMMASVIRSQDEIGRYGGEEFIVIMPDTSLKDAEVVMERMRQ 302 Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +EN I G I +T+S G+A I+ +AD+ LY AK++GRNRV SD Sbjct: 303 SVENMLIETEHGIVIPVTVSIGVAAIAPSVSRYEEILAQADKGLYTAKRNGRNRVSVQSD 362 Query: 261 IEN 263 ++ Sbjct: 363 YQS 365 >gi|78485721|ref|YP_391646.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78364007|gb|ABB41972.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2] Length = 411 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 85/164 (51%), Gaps = 8/164 (4%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL A + S K SI DID+FK ND +GH VGD V+ ++ +L ++ Sbjct: 235 DQLTGLNGRRALLESFLGLGRKYSIAMMDIDHFKSFNDTYGHDVGDAVLRTVAYELSLIS 294 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIH--ITISAG 223 ++ R GGEEF G Q+ +R IEN + + G + +T+S G Sbjct: 295 TGQVY--RYGGEEFTVVFKGKQAQQVKPALEAVRYAIENRVLEVEKQGQPVETKVTVSFG 352 Query: 224 IAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 +AER K+P ++ AD+ALY AKKSGRNR+V + T Sbjct: 353 LAERNDQFKKP-EEVMKAADEALYQAKKSGRNRIVVEGESPKTT 395 >gi|56413101|ref|YP_150176.1| hypothetical protein SPA0883 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362027|ref|YP_002141664.1| hypothetical protein SSPA0823 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81361581|sp|Q5PLI4|YEDQ_SALPA RecName: Full=Cellulose synthesis regulatory protein gi|56127358|gb|AAV76864.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093504|emb|CAR58965.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 570 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 L+L+ + T LL+ + + I+K +F+ N + + D L+ L N A Sbjct: 362 LTLLWVLFTAMLLISWGVIRHIVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421 Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY AK+SGRNR +C SD Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562 >gi|94312478|ref|YP_585688.1| diguanylate cyclase [Cupriavidus metallidurans CH34] gi|93356330|gb|ABF10419.1| conserved hypothetical protein (contains GGDEF domain) [Cupriavidus metallidurans CH34] Length = 587 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 25/225 (11%) Query: 59 YGLEYILVENLSLVIISITISL-LLGYISGSILKELFISY----NRISQLSRIDCLSGLL 113 Y + + LSL +++I L +L Y++ ++ LF Y ++ Q++ D L+ L Sbjct: 348 YDVYATVARRLSLPLLTIWFLLPVLMYVTLRVVTLLFDHYLAAGRKLQQMAETDPLTQLA 407 Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N F + L+++ DIDYFK++ND +GH GD V+ ++D + Sbjct: 408 NRRRFSEQFKKETARRQRDGTPLAMLMLDIDYFKRVNDKWGHASGDCVLMAMADLMRKHL 467 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---------KIIENSQINISSGPSIH 217 F RLGGEEFA G+S EA A LR + Q + G I Sbjct: 468 REIDFPARLGGEEFAVLLPGASSDEAVAAAERLRLAVEAAFVEAAPDAPQPDTGDG-RIR 526 Query: 218 ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 T+S G+AE + + ++ AD+ LYVAK++GRNR VC +D Sbjct: 527 FTVSIGVAEAGTDGCQTLDAMLAVADRRLYVAKEAGRNR-VCATD 570 >gi|47093828|ref|ZP_00231573.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858] gi|47017795|gb|EAL08583.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858] Length = 378 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N F + ++N LS++ DIDYFK++ND +GH VG+ Sbjct: 205 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 264 Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 265 GVLSTFSQMLLKISFPPNTLISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 324 Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA R + P + ++ ADQALY AK++GRN+V Sbjct: 325 ASGSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 369 >gi|261247152|emb|CBG24975.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 570 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 20/206 (9%) Query: 74 ISITISLLLGYISGSIL----------KELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 ISI ++LL G + +L K +F+ N + + D L+ L N A Sbjct: 358 ISIALTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKAS 417 Query: 124 S----YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+G Sbjct: 418 RLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVG 477 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234 GEEF G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE Sbjct: 478 GEEFCIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFE 537 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260 + AD+ LY AK+SGRNR +C SD Sbjct: 538 QLQSLADKRLYYAKQSGRNR-ICASD 562 >gi|226939634|ref|YP_002794707.1| Sensor protein [Laribacter hongkongensis HLHK9] gi|226714560|gb|ACO73698.1| Sensor protein [Laribacter hongkongensis HLHK9] Length = 379 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 10/173 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFG 147 EL + N++ + D L+ LLN A + L ++ L+++ DID+FK +ND G Sbjct: 206 ELLQAKNQLEVRATYDPLTQLLNRGAILEGLSQSCCDPSQPLAVILADIDHFKNVNDVHG 265 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD + ++ +L V VGR GGEEF G++ A I+A LR+ + Sbjct: 266 HQAGDMALEAVARRLGRVLRGGDAVGRYGGEEFLIVLPGATPDVAMIVAERLRQAVAGEP 325 Query: 208 INISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRVV 256 +++ G S +T+S G+ C ++ +I ADQALY AK GRN+V+ Sbjct: 326 VDLGGGRSQSLTLSLGVC--CQPGGQAHDVACLIAEADQALYAAKAGGRNQVM 376 >gi|313682575|ref|YP_004060313.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313155435|gb|ADR34113.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 652 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 97/205 (47%), Gaps = 17/205 (8%) Query: 51 FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110 F + + PF YIL S IS T+ + + L +YNR S Sbjct: 458 FTLSIAPFDDQRYIL----SFSDISSTMQDFIDLGQKATHDPLTGAYNRTFLES------ 507 Query: 111 GLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 N+ + +G + ++L ++ FDIDYFK++ND +GH GD V+ + + L Sbjct: 508 ---NYDRIVQKIGYHQKELCVMMFDIDYFKKVNDTYGHNRGDNVLKYFVNVLNESIRNED 564 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 + R GGEEF S+++A +A LR IE + HIT S G+ + Sbjct: 565 VLIRWGGEEFILLLAVESDEQALKVAEHLRHTIETAYFEEVE----HITCSIGVTLHNFE 620 Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255 E I I RAD+ALY AK SGRNRV Sbjct: 621 EKIMQTIKRADEALYKAKSSGRNRV 645 >gi|126652687|ref|ZP_01724848.1| hypothetical protein BB14905_23013 [Bacillus sp. B14905] gi|126590536|gb|EAZ84654.1| hypothetical protein BB14905_23013 [Bacillus sp. B14905] Length = 325 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 86/168 (51%), Gaps = 12/168 (7%) Query: 102 QLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N F L SY E S+ DID+FK++ND FGH VGD V Sbjct: 163 ELSETDKLTGLKNRRFFQDKLEQQLNSYYESAKPFSLCILDIDHFKKVNDTFGHQVGDDV 222 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +A L+ L V R GGEEF + A L +RK + + P Sbjct: 223 LAQLAQLLTQRARKEDTVARYGGEEFVMILPETEIAAAKELGEQIRKT-----VALDHWP 277 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +TIS G+A ++ +T++ AD ALY +KK+GRN+V F D++ Sbjct: 278 AGQVTISIGMATVTSEDTGTTLLKNADDALYASKKNGRNQVTHFFDMK 325 >gi|330504379|ref|YP_004381248.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328918665|gb|AEB59496.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 349 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 102/200 (51%), Gaps = 15/200 (7%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 ++ NL L +++ I + Y IL E R+++ + D L+GL N Sbjct: 144 IIANLGLASLAVMIFAHI-YERSRILNE-----KRLTEQATTDALTGLPNRLKLAEVFER 197 Query: 125 YNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 LS+VF DID+FKQIND FGH +GD+ +A + L RLGG Sbjct: 198 ERAHALRNGTSLSLVFLDIDHFKQINDRFGHEIGDRALAHFATVLAQRLRINDLFCRLGG 257 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTI 236 EEFA GS+ ++A +A LR+ + + + ++ +T+SAG+A + + + + Sbjct: 258 EEFAVLLPGSTAEQARDIAESLRERLAAAPLAFDD-IALPMTLSAGVASFKADGQSLHEL 316 Query: 237 IYRADQALYVAKKSGRNRVV 256 + AD+ Y AK++GRNRV+ Sbjct: 317 MLAADRRTYAAKRAGRNRVI 336 >gi|261341470|ref|ZP_05969328.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316] gi|288316264|gb|EFC55202.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316] Length = 472 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 11/184 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLS---IVFFDID 137 G + E + R++ + D L+G LN SA + L S ++ S ++ FD+D Sbjct: 288 GLDITERKKAEQRLAVKATTDDLTGCLNRSAILHQLKMALAVNSRHDPRSHFCVLMFDLD 347 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 YFKQIND +GH VGD + D + + +GR+GGEEF + + A L+ Sbjct: 348 YFKQINDGWGHQVGDAALRHFCDCIRALSPADSLLGRVGGEEFLLLLARGNGEAATRLSA 407 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 LR ++ + + + + S+ ++ SAG+ E C + S ++ RAD+ALY AK++GR + V Sbjct: 408 RLRTMLSSKPLQVGN-KSLVLSFSAGVVEVCLGQRDSSALLTRADKALYDAKRTGRGKTV 466 Query: 257 CFSD 260 SD Sbjct: 467 VASD 470 >gi|289651656|ref|ZP_06482999.1| GGDEF [Pseudomonas syringae pv. aesculi str. 2250] Length = 358 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 20/223 (8%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L P L + + + + + + + +G++S + +L+ N + ++SR D L+GLLN Sbjct: 135 LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 194 Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 H A+ L + +++ I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 195 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 254 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222 +GR GG+EF + +A R+I+E +++ I S + +++S Sbjct: 255 DSDLIGRCGGDEFCVILPDTRLFQA-------REILERTRLAIDEMSYSLQRDLKVSLSI 307 Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 GIA + P S+ ++ AD+ALY+AK +GRN V D+ + Sbjct: 308 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDMPSE 350 >gi|261420041|ref|YP_003253723.1| diguanylate cyclase and metal dependent phosphohydrolase [Geobacillus sp. Y412MC61] gi|319766855|ref|YP_004132356.1| diguanylate cyclase and metal dependent phosphohydrolase [Geobacillus sp. Y412MC52] gi|261376498|gb|ACX79241.1| diguanylate cyclase and metal dependent phosphohydrolase [Geobacillus sp. Y412MC61] gi|317111721|gb|ADU94213.1| diguanylate cyclase and metal dependent phosphohydrolase [Geobacillus sp. Y412MC52] Length = 608 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 31/260 (11%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY---ILVENLSLVIISITISLLLGY--- 84 F S+ + +I I+ IF+F++ L Y + +L E + +++ +SL+L Sbjct: 141 FPYMVSLLVYFLINISLIFMFFVFLERVYKGAFNFGVLFEAMVSYCVTLILSLVLAILLD 200 Query: 85 ---------------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---- 125 I + ++ + Y +S + D L+GL NH F +L Sbjct: 201 KERYFGLFLFTVLVIILSVVFRKFIVLYELVSNRANKDHLTGLYNHGFFKETLKEQFSDC 260 Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFA 181 + L++ F D+D FK+ ND GH GD+++ F L V GT V R GGEEFA Sbjct: 261 KLLKQPLTLAFLDLDDFKKYNDRNGHLQGDRLLTFFGKLLQKAVEGTNFTVARYGGEEFA 320 Query: 182 AAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYR 239 +++++A N LRK + ++ + P ++ S GIAE +I+R Sbjct: 321 ILMPNTTKEDAYAFLNRLRKEVNDTYFEGVEHIPYRCLSFSCGIAEMEKDMHESDELIHR 380 Query: 240 ADQALYVAKKSGRNRVVCFS 259 ADQALY AK G+N V + Sbjct: 381 ADQALYYAKAQGKNNVQLYD 400 >gi|222832502|gb|EEE70979.1| predicted protein [Populus trichocarpa] Length = 268 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 25/225 (11%) Query: 59 YGLEYILVENLSLVIISITISL-LLGYISGSILKELFISY----NRISQLSRIDCLSGLL 113 Y + + LSL +++I L +L Y++ ++ LF Y ++ Q++ D L+ L Sbjct: 29 YDVYATVARRLSLPLLTIWFLLPVLMYVTLRVVTLLFDHYLAAGRKLQQMAETDPLTQLA 88 Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N F + L+++ DIDYFK++ND +GH GD V+ ++D + Sbjct: 89 NRRRFSEQFKKETARRQRDGTPLAMLMLDIDYFKRVNDKWGHASGDCVLMAMADLMRKHL 148 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---------KIIENSQINISSGPSIH 217 F RLGGEEFA G+S EA A LR + Q + G I Sbjct: 149 REIDFPARLGGEEFAVLLPGASSDEAVAAAERLRLAVEAAFVEAAPDAPQPDTGDG-RIR 207 Query: 218 ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 T+S G+AE + + ++ AD+ LYVAK++GRNR VC +D Sbjct: 208 FTVSIGVAEAGTDGCQTLDAMLAVADRRLYVAKEAGRNR-VCATD 251 >gi|254508382|ref|ZP_05120503.1| hypothetical protein VPMS16_744 [Vibrio parahaemolyticus 16] gi|219548695|gb|EED25699.1| hypothetical protein VPMS16_744 [Vibrio parahaemolyticus 16] Length = 596 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 4/163 (2%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVI 155 ++++L+R D L+G+LN A + S I D+D+FKQIND GH VGD V+ Sbjct: 433 QLTRLAREDPLTGVLNRRALVDGAEEIRRLASSCYICMMDLDHFKQINDQCGHSVGDDVL 492 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINISSGP 214 D + GRLGGEEFA ++ +EAA +A +R +E + + S Sbjct: 493 VAFCDAVAKETRESDMFGRLGGEEFALLLPNTTLREAAQIAERIRVRVECDLAEKLCSSH 552 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ +T+S G+ +++ + ++ AD+ LY AK+SGRN++V Sbjct: 553 TLPVTVSMGLVSWPNEKAFTQVLDHADKLLYKAKQSGRNQIVA 595 >gi|85859312|ref|YP_461514.1| PAS sensory box/GGDEF family protein [Syntrophus aciditrophicus SB] gi|85722403|gb|ABC77346.1| PAS sensory box/GGDEF family protein [Syntrophus aciditrophicus SB] Length = 300 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 49/124 (39%), Positives = 71/124 (57%), Gaps = 1/124 (0%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 I+F DID+FK+ ND +GH VGD V+ F++D LV +GR GGEEF + Sbjct: 173 GILFMDIDHFKEFNDTYGHDVGDLVLRFVADTLVKNARPSDLIGRWGGEEFIGILRNVTH 232 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 + IL N LR +IEN+ I + + +H++IS G + T++ RAD LY +K+ Sbjct: 233 ENLEILGNRLRVLIENAYITLKT-EQLHVSISVGATLMLDNDSSDTLLKRADMLLYESKR 291 Query: 250 SGRN 253 GRN Sbjct: 292 RGRN 295 >gi|313682082|ref|YP_004059820.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313154942|gb|ADR33620.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 307 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 87/176 (49%), Gaps = 8/176 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFK 140 S + EL N L ID L+ + N I L + N+ LSI+ D D FK Sbjct: 130 SKIDELSTELNETVSLLTIDPLTKVTNRKGLIDDLNNALQIGKNKALSIILLMIDADDFK 189 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND GH GD+V+ F + + V V R GGEEF S +++A LA+ +R Sbjct: 190 LINDQHGHLAGDRVLYFFAQSIKSVIRPGDKVYRYGGEEFTVVLHQSDKEQAYSLADKIR 249 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IE SQ+ I SG +I +T+S G + + RAD ALY AKK G+NR + Sbjct: 250 SKIEQSQL-IYSGKTIKMTVSVGATVHHQGDSYDDFVGRADDALYRAKKEGKNRTI 304 >gi|241761861|ref|ZP_04759947.1| diguanylate cyclase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373775|gb|EER63335.1| diguanylate cyclase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 318 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 9/190 (4%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSY 125 +IS I L I+ L EL + R+ +L+ D L+GLLN AF + Sbjct: 129 LISNQIRKLRLMITNKTL-ELQETNLRLKELANTDELTGLLNRRAFTEMFEKNCAQFSKT 187 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 ++ S+ DID+FK+INDN GH GD VI +++ ++ F R GGEEF Sbjct: 188 KDQFSVFILDIDFFKKINDNEGHLAGDAVIQYIAQKITENIRQQDFAARYGGEEFVIMLP 247 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 + + +A+ + I + G I +T+S G+A + ++++ RAD+ LY Sbjct: 248 NADMETTCQVASRIGNAISEKPVPY-QGREIPVTVSIGVAVMKENDDANSLLERADERLY 306 Query: 246 VAKKSGRNRV 255 +AK GRNRV Sbjct: 307 MAKNQGRNRV 316 >gi|194364972|ref|YP_002027582.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] gi|194347776|gb|ACF50899.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] Length = 471 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 97 YNRISQL-SRIDCLSGLLNHSAFISS-------LGSYNE-KLSIVFFDIDYFKQINDNFG 147 + RI +L + D L+ LLN F+ + L + N S++ D+D+FK IND G Sbjct: 287 FERIGELDAGSDALTNLLNRR-FLPTVLRREIELATRNRTPFSLLLLDLDHFKAINDGHG 345 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+ + ++ L + ++ R GGEEF + +SE +AA++A LR+ I S Sbjct: 346 HDAGDRALQHVAGVLGQLTRGSDYLFRYGGEEFVVVLVAASESQAAVIAESLRRQIAKSP 405 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +++G + +T S G+A ++ RAD A+Y AK+SGRNRVV S Sbjct: 406 VPLANGQVLSLTASIGVAGHDGHPDYERLMARADAAMYEAKRSGRNRVVVAS 457 >gi|302186039|ref|ZP_07262712.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 418 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N + I ++ + S++ DID+FK +ND +GHP Sbjct: 255 QKLLEIAHSDPLTGLDNRRSAEHMLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 314 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI ++ L R GGEEF SS ++AA LA +R +EN I Sbjct: 315 GDSVITSVAAILKQRIRLMDIAARWGGEEFLILVPDSSLRQAAELAERIRNSVENLVIPE 374 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +TIS G+AE E +++I RAD+ALY AK+ GRNRV C Sbjct: 375 TGS----VTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRVEC 417 >gi|325292439|ref|YP_004278303.1| two component response regulator [Agrobacterium sp. H13-3] gi|325060292|gb|ADY63983.1| two component response regulator [Agrobacterium sp. H13-3] Length = 430 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 92/178 (51%), Gaps = 11/178 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 E R+ +L+ D L+GL N +F + + +E ++ DID+FK+IND Sbjct: 243 ETLKQLKRLRELAERDHLTGLPNRRSFFERTRALMDVINDNDENGAVAILDIDHFKKIND 302 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH GD+ + L++ L + + RLGGEEFA G + A +LR + Sbjct: 303 TLGHDAGDRALKKLAELLHDMCHEQRHIPARLGGEEFAVFLRGLNAHAAYQFCEELRGAV 362 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 E + +S G S+ +TIS G+ E EP + ADQ LY+AK +GRNRV +SDI Sbjct: 363 EKNGRQLS-GSSLALTISLGVVEIEKGEPFDNQLNAADQLLYLAKANGRNRV--YSDI 417 >gi|70729826|ref|YP_259565.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68344125|gb|AAY91731.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5] Length = 315 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 10/169 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++ LSR D L+ L N + L + ++++ DID+FK IND GH GD Sbjct: 149 QQLQHLSRTDHLTQLYNRGHWEQRLQFEYSRHGSSIALLMLDIDHFKSINDRHGHQAGDA 208 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 VI +S+ + GR GGEEFA + A LA LR+ +E ++ I +G Sbjct: 209 VIKRVSELIHQHVRDSDVAGRYGGEEFAILLPHTDLAGARTLAERLRQSVEEQEV-IHNG 267 Query: 214 PSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259 +I TIS GIA C P +I ADQALY +K++GRNRV ++ Sbjct: 268 QAIAFTISLGIA--CLDRPARDHRCLIEWADQALYASKRAGRNRVSTYA 314 >gi|313623161|gb|EFR93423.1| ggdef domain-containing protein [Listeria innocua FSL J1-023] Length = 379 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 11/167 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-GSYN------EKLSIVFFDIDYFKQINDNFGHPVG 151 + Q + +D L+GL N F + ++N LS++ DIDYFK++ND +GH VG Sbjct: 204 ELQQSTILDPLTGLTNFRHFEKTFEAAFNYATLKKSNLSLIIIDIDYFKRVNDTYGHLVG 263 Query: 152 DKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 264 NGVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPI 323 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 ++ S+ ITISAGIA K S +++ ADQALY AK++GRN+V Sbjct: 324 ATTGSV-ITISAGIANYDGKNYPSANELMHAADQALYNAKRNGRNQV 369 >gi|119776342|ref|YP_929082.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119768842|gb|ABM01413.1| diguanylate cyclase [Shewanella amazonensis SB2B] Length = 624 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 15/185 (8%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 +L+EL ++++ + ID L+G+ N +AF L + ++++ DID+FK Sbjct: 438 VLRELNEVNQKLTEQTTIDSLTGVKNRAAFNKRLQAEGRISRRQQTPMALLMLDIDHFKN 497 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDL 199 IND +GH GD + ++D L P V R GGEEF A L S++ E A+ +A + Sbjct: 498 INDKYGHLAGDYTLKAIADTLSAQLRRPTDLVSRFGGEEF-AIILPSTDAEGAVAVAEHI 556 Query: 200 RKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 R+ +E I I +T+S G++ + P+ ++ +AD+ALY AK GRNRV Sbjct: 557 REAVEELTIKWEQF-MIPLTVSIGVSSNIIESDEHPLQ-LLEQADKALYQAKHDGRNRVG 614 Query: 257 CFSDI 261 F DI Sbjct: 615 LFQDI 619 >gi|313682742|ref|YP_004060480.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum kujiense DSM 16994] gi|313155602|gb|ADR34280.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum kujiense DSM 16994] Length = 754 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 13/169 (7%) Query: 97 YN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFG 147 YN R+ +LS D L+G+ N LG +K+ +I+ D+D+FK IND FG Sbjct: 588 YNTRLLELSTTDKLTGIYNRQKTDEKLGHEQQKVNRYRGYHCTIMMIDVDHFKNINDTFG 647 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+++ L++ + +GR GGEEF +S EAA +A LR + N Sbjct: 648 HQEGDRILQKLAEVMKKSLRQSDMIGRWGGEEFMVILSHTSLDEAATVAEHLRHTV-NEF 706 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P +TIS G+ E + E + + R D ALY AK+SGRN VV Sbjct: 707 PFTELYP---VTISIGVGEFMYGEEVHECVARVDAALYRAKESGRNSVV 752 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] gi|133737925|emb|CAL60970.1| conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 568 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 29/183 (15%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------------IVFFD 135 L+EL I+ + QL+R D L+GL N NE+L+ I+ D Sbjct: 391 LQELNIT---LEQLARTDALTGLANRM-------HTNERLAEEFARFKRSKIPYCILMLD 440 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 +D+FK++ND +GH VGD+V+ ++ L FVGR GGEEF + + A ++ Sbjct: 441 VDFFKRVNDIYGHGVGDEVLKHVASILSATVRKTDFVGRHGGEEFLSILPMTDSSAAMVV 500 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNR 254 A +R IE++ I GP ++T+S G+ E + + + RAD+ +Y AKKSGRN+ Sbjct: 501 AEKIRNTIESTPI----GPVGNLTVSIGVQEVTVNDINEDVAVTRADECMYQAKKSGRNK 556 Query: 255 VVC 257 V+ Sbjct: 557 VIS 559 >gi|239907745|ref|YP_002954486.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239797611|dbj|BAH76600.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 458 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 21/213 (9%) Query: 62 EYILVENLSLVIISITISLLLGYISG--SILKELFISYN-RISQL-------SRIDCLSG 111 E I+ ++S+ + ++T L+G I+ +++ + +++N RI++L SR D L+G Sbjct: 249 EEIVNRHVSINVETMTDYGLIGRIAAGFALIVAIVVAWNLRINKLYAELERRSRTDPLTG 308 Query: 112 LLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 L N + + L YN +++ FD+D FK +ND GH VGDKV+ L++ Sbjct: 309 LANRTHLDAVLRQEADRAERYNRPFAVILFDVDLFKAVNDAHGHLVGDKVLKTLAEAAQA 368 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 VGR GGEEF + A +LA LR + + + T+S G+ Sbjct: 369 TVRASDMVGRWGGEEFLVLCPETDAASALVLAERLRLAVRGERFETGT----VQTVSLGV 424 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 A + + +++ RAD ALY AK +GR+R + Sbjct: 425 AAFAPGDCVDSLLIRADDALYKAKNAGRDRAMA 457 >gi|209549612|ref|YP_002281529.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535368|gb|ACI55303.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 355 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 18/183 (9%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK-----LSIVFFDIDYFKQI 142 + KEL Y RI+ D L+ L N AF L + +N +++ DID FK+I Sbjct: 165 VRKELD-EYKRIAN---TDSLTRLSNRRAFDERLAAVFNNPGMRPVTALLLADIDNFKKI 220 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHPVGDK++A ++ + +FV R GGEEFA G++ +E +A +R+ Sbjct: 221 NDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIDGNTPEEITAIAERIRRT 280 Query: 203 IE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +E NS+ ++ GP IT+S GI E + + D ALY AK +GRN + Sbjct: 281 LETTPFKNSRTRVNYGP---ITVSIGICMASSAEDAGELYSKTDIALYGAKNAGRNCTIL 337 Query: 258 FSD 260 + D Sbjct: 338 YQD 340 >gi|153835016|ref|ZP_01987683.1| sensory box/ggdef family protein [Vibrio harveyi HY01] gi|148868537|gb|EDL67634.1| sensory box/ggdef family protein [Vibrio harveyi HY01] Length = 539 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 16/200 (8%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125 E L+ + + +S++L Y F RI L+ D L+GL+N +AF S Sbjct: 339 ERKWLMQVGVVLSIVLAYFIARFQLRAFSDNQRIYYLAHHDSLTGLVNRAAFQSQASEVL 398 Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ +++ D+D FK IND +GH GDK + ++ + VFG+ + RLGG+E Sbjct: 399 AQCLKAGREVCLIYLDLDSFKFINDEYGHAAGDKTLQHVASVMQRVFGSKALLARLGGDE 458 Query: 180 FAAAALGSSE--QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PIS 234 F A L S E Q+ A+ L ++I++ I P ++ ++ I KE + Sbjct: 459 F-AILLSSQEHMQDPEHFASSLIQLIQDP---IEVRPDVYHQVTTSIGGCYAKETNCTLD 514 Query: 235 TIIYRADQALYVAKKSGRNR 254 ++++AD A+Y AKKSG+NR Sbjct: 515 ELMHQADMAMYEAKKSGKNR 534 >gi|148554237|ref|YP_001261819.1| diguanylate cyclase [Sphingomonas wittichii RW1] gi|148499427|gb|ABQ67681.1| diguanylate cyclase [Sphingomonas wittichii RW1] Length = 1004 Score = 95.5 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 8/171 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNE---KLSIVFFDIDYFKQIND 144 +L + R+ L+ D L+G N F++ +G+ L + D+D FK +ND Sbjct: 827 DLRAANERLGHLALTDPLTGCANRRHFLALAEDQIGAARRGGRPLCLAILDLDEFKAVND 886 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GHP GD V+ L+ GR+GGEEFA ++ +A + A+ LR+ I Sbjct: 887 RHGHPGGDAVLEMAGILLLDHLREGDAAGRIGGEEFAILMPNTAIADARLFADRLREAIA 946 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++I + G SI +++S G+AE C E + RAD LY AK++GRNRV Sbjct: 947 TARITVD-GLSIGVSVSMGVAELCDDEDFGRLYARADTGLYAAKQAGRNRV 996 >gi|17547151|ref|NP_520553.1| hypothetical protein RSc2432 [Ralstonia solanacearum GMI1000] gi|17429453|emb|CAD16139.1| putative signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum GMI1000] Length = 551 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 15/196 (7%) Query: 71 LVIISITISLLLGYISGSILKELFISYNR----ISQLSRIDCLSGLLNHSAFISSLGS-- 124 LV + + SLL + + L S R ++ + D L+G+L F++ + Sbjct: 355 LVFVLVVWSLLRERQHHRVTRHLNQSLQRTNSALANEAHFDHLTGVLTRRRFLALFETVL 414 Query: 125 -----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 E+L +V D+D+FK+IND +GH VGD + + V + +GRLGGEE Sbjct: 415 TRTHVRGEQLVLVLADLDHFKRINDTWGHAVGDLALQRFASLATSVMRSSDLIGRLGGEE 474 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238 FA ++ +EAA + LR + + ++ SG + +T+S G+ CH + S ++ Sbjct: 475 FAVVMGRTTLEEAAGVVERLRAAVAEADASLPSG--LAMTVSLGMTA-CHTGDTASEMLR 531 Query: 239 RADQALYVAKKSGRNR 254 RAD ALY AK+SGRNR Sbjct: 532 RADLALYRAKESGRNR 547 >gi|89092186|ref|ZP_01165140.1| diguanylate cyclase, putative [Oceanospirillum sp. MED92] gi|89083274|gb|EAR62492.1| diguanylate cyclase, putative [Oceanospirillum sp. MED92] Length = 529 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N +A+ + Y S+V D+D+FK+IND +GH GDKV+ Sbjct: 369 ARTDPLTGLPNRAAYDEQIAQEYERWSRYRTSFSVVVADLDFFKKINDTYGHLAGDKVLR 428 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + FV R GGEEF + +EAA + LR+ + +S N P + Sbjct: 429 LVAKVITKNIRVTDFVARYGGEEFVILLPSTVAEEAAQAMDKLRESLASSPFNFHGKP-V 487 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 IT+S G+ E + + + RAD+ALY AK+ GRN Sbjct: 488 GITMSFGVTEIKEGDSLDDVFTRADEALYQAKEDGRN 524 >gi|312964602|ref|ZP_07778853.1| diguanylate cyclase domain protein [Escherichia coli 2362-75] gi|312290623|gb|EFR18501.1| diguanylate cyclase domain protein [Escherichia coli 2362-75] Length = 371 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMFGTPA-ESAITA--MLRVHEGLNTLRLPNAPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|317131122|ref|YP_004090436.1| diguanylate cyclase [Ethanoligenens harbinense YUAN-3] gi|315469101|gb|ADU25705.1| diguanylate cyclase [Ethanoligenens harbinense YUAN-3] Length = 394 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/182 (36%), Positives = 99/182 (54%), Gaps = 8/182 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 +EL I+ ++ +L+ +D L+ L N +F + + +S++ DIDYFKQ ND++G Sbjct: 213 RELAIANMQLKKLTLMDELTELPNRRSFREFVDKTFQMHSTVSVIMIDIDYFKQYNDSYG 272 Query: 148 HPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 H GD + ++ Q+ +V T R GGEEF AA +++ +AN LR I N Sbjct: 273 HDAGDAALTTVAKQIGSIVENTYQIAVRWGGEEFIYAAFNITKENIIEIANALRLRILNL 332 Query: 207 QI-NISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +I N +S +ITIS GI + + +II ADQALY AK +GRNRV D E Sbjct: 333 KIPNRNSLACPYITISLGICTGTVANIKNFDSIIKIADQALYQAKNNGRNRVTIL-DYEE 391 Query: 264 NT 265 T Sbjct: 392 ET 393 >gi|157375073|ref|YP_001473673.1| hypothetical protein Ssed_1934 [Shewanella sediminis HAW-EB3] gi|157317447|gb|ABV36545.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3] Length = 634 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 86/168 (51%), Gaps = 13/168 (7%) Query: 100 ISQLSRIDCLSGLLNHSA----FISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGD 152 I +LS D L+GL N FI+ +N + S++ D+D+FKQ+ND FGH VGD Sbjct: 471 IERLSVTDTLTGLNNRRRLDELFINEFDRFNRYERQFSMILLDVDHFKQVNDKFGHKVGD 530 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + + L +GR GGEEF +S A LA +RKIIE++ Sbjct: 531 KVLIEMGEILASSVRKNDLLGRWGGEEFLLICPETSIDGAIDLAEKIRKIIEDTDF---- 586 Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P I +T S G+ + + RAD ALY AK+ GRN VV + Sbjct: 587 -PEIGSVTASFGVTVSIKDDSDEDMFIRADNALYTAKRDGRNCVVQLT 633 >gi|298291254|ref|YP_003693193.1| diguanylate cyclase [Starkeya novella DSM 506] gi|296927765|gb|ADH88574.1| diguanylate cyclase [Starkeya novella DSM 506] Length = 511 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 10/177 (5%) Query: 100 ISQLSRIDCLSGLLNHSA-----FISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+GL N A +L + +K LS+ DIDYFK++ND +GH +GD Sbjct: 326 LQRLSLTDALTGLPNRRACDLMLAHEALRAARDKTELSVAMIDIDYFKRVNDRYGHQIGD 385 Query: 153 KVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 +VIA ++ + + R GGEEF + A LA +R+ IE + Sbjct: 386 RVIARVAATIEATARRAGDYAARYGGEEFMLILPSTGADGALFLAERVRRAIEGQDLQAE 445 Query: 212 SGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 + +TIS G+A R + I ++ +AD+ALY AK SGRNRVV S E Sbjct: 446 APGLSGVTISIGLATRSVDDASTIEDLVQKADRALYNAKSSGRNRVVAASAREEPAA 502 >gi|170690912|ref|ZP_02882078.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis C4D1M] gi|170144161|gb|EDT12323.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis C4D1M] Length = 312 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 11/203 (5%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122 L +V + +TIS + ++S + +E + ++ + + D L+G+ N F + L Sbjct: 113 LTREREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYADRDGLTGIANRRYFEARLLD 170 Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 Y +S++ FD+D+FK+IND FGH VGD V+ ++ ++ V GR GG Sbjct: 171 EYTRWQRYGGDMSVLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTI 236 EEFA + ++A +A +R I ++ + + G S+ +T S G A R + Sbjct: 231 EEFALLLPCTPLEDAMRVAEKIRCTIADTPVEV-QGTSVPVTASVGGAAARPGLPAYEVL 289 Query: 237 IYRADQALYVAKKSGRNRVVCFS 259 I AD ALY AK+ GRNR V + Sbjct: 290 INEADAALYSAKRQGRNRSVALT 312 >gi|168259727|ref|ZP_02681700.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350547|gb|EDZ37178.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 570 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 L+L+ + T LL+ + + ++K +F+ N + + D L+ L N A Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421 Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + Sbjct: 482 CIVLPGATKAQAQQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY AK+SGRNR +C SD Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562 >gi|320162556|ref|YP_004175781.1| putative signaling protein [Anaerolinea thermophila UNI-1] gi|319996410|dbj|BAJ65181.1| putative signaling protein [Anaerolinea thermophila UNI-1] Length = 609 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 9/167 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 ++ + +L+R+D L+G LN +F I Y+ LS++ D+D+FKQ+ND +GH Sbjct: 442 FSEVQRLARLDSLTGALNRRSFYDQGQHEIQRAQRYHSPLSLIMLDVDHFKQVNDRYGHL 501 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+ + + + +VGR GGEEF +S + A +A L +E + Sbjct: 502 AGDEALKAVVQTCLAQVRQADWVGRFGGEEFVILLPETSLEGALAMAQRLCTAVETLRFP 561 Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255 + ITIS G+AER + ++ AD+ALY AK GRNRV Sbjct: 562 -GRDERMCITISVGVAERTLEMTQVEQLLNAADEALYRAKAMGRNRV 607 >gi|158424341|ref|YP_001525633.1| GGDEF domain-containing protein [Azorhizobium caulinodans ORS 571] gi|158331230|dbj|BAF88715.1| GGDEF domain protein [Azorhizobium caulinodans ORS 571] Length = 510 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 10/171 (5%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS+ D L+GL N F ++++ DID+FKQ+ND GHP GD+V Sbjct: 335 RLSQTDSLTGLPNRRHFDEFGQREWQRAARQRSSIAVLMVDIDHFKQVNDRIGHPGGDRV 394 Query: 155 IAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + +SD + P F GR GGEEFA + AA +A +R IE + + Sbjct: 395 LREVSDIIRASLHRPGDFAGRYGGEEFAIILPETDAPAAAHVAERIRAAIEANTAEGVAP 454 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 ++ I ++AG+A K ++ ++ AD ALY AK++GRNRVV N+ Sbjct: 455 VTVSIGLAAGLA--APKGTLAEMMIAADHALYRAKETGRNRVVSSHVARND 503 >gi|170742549|ref|YP_001771204.1| diguanylate cyclase [Methylobacterium sp. 4-46] gi|168196823|gb|ACA18770.1| diguanylate cyclase [Methylobacterium sp. 4-46] Length = 383 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 10/172 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGH 148 KE R+S L+ D L+G LN + +++ D+D+FK++ND +GH Sbjct: 208 KERLEWQQRLSALT--DPLTGALNRRGLEQAAACVLAGGPATLLLLDLDHFKRVNDTYGH 265 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+V+ + + +GRLGGEEF A L + A +A +R+ + + + Sbjct: 266 GVGDEVLVACAAAMPGCLPPRAVIGRLGGEEF--ACLLPDGEGAGEIAEAIRRAV--AAL 321 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + P +H+T S G A R E + +I RAD+ALY AK+ GRNRV D Sbjct: 322 RLERAPDLHVTASIG-AARGGSE-LQCLIARADRALYRAKRGGRNRVAWDPD 371 >gi|78777034|ref|YP_393349.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78497574|gb|ABB44114.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM 1251] Length = 487 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH---SAFISSL----GSYNEKLSIVFFDIDYFKQIN 143 K L + +++ L+ D L+ + N FIS YN L+++ DID+FK++N Sbjct: 317 KSLMEANQKLNNLASKDSLTNIFNRRIIDEFISKETIKSKRYNNSLALIMIDIDHFKEVN 376 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGD+VI L D + GR GGEEF ++ +A I+A ++RK + Sbjct: 377 DKYGHQVGDEVILSLVDIISKNIRESDIFGRWGGEEFIILLPETNLNQATIVAQNIRKKV 436 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + + G TIS G++E + + I R D ALY AK +GRNRVV Sbjct: 437 QEYRFD-KVGQK---TISLGVSEFNSNDDSTVFIKRVDDALYKAKATGRNRVVS 486 >gi|241763407|ref|ZP_04761462.1| diguanylate cyclase [Acidovorax delafieldii 2AN] gi|241367449|gb|EER61760.1| diguanylate cyclase [Acidovorax delafieldii 2AN] Length = 445 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 9/196 (4%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 V++ T+SL+L +L I+ + L+ +D L+ + N AF IS+ Sbjct: 242 VVLEATLSLVLMAFGALMLTNEHIT-RELRHLAEVDPLTNVFNRRAFLTLLEKAISNAQR 300 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 L ++ D+D+FK+IND +GH GD+V+ +GRLGGEEFA Sbjct: 301 TQSGLPVLVIDLDHFKKINDTWGHQSGDEVLRHFVALANGCLRKEDVMGRLGGEEFAIFL 360 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 +S + + +A LR ++ + GP I +T+S G+ + E ++ RAD+A+ Sbjct: 361 PNASSEGSQAVAERLRALVAHHPAMTGRGP-IALTVSIGVTQYGGGETSDFVLQRADEAM 419 Query: 245 YVAKKSGRNRVVCFSD 260 Y AK+ GRNRV S Sbjct: 420 YRAKERGRNRVETLSP 435 >gi|218458040|ref|ZP_03498131.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5] Length = 242 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 18/183 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQ 141 + KEL Y RI+ D L+ L N AF L + + +++ DID FK+ Sbjct: 29 QVRKELD-EYKRIAN---TDSLTRLSNRRAFDDRLAAVFDNPGMRPVTALLLADIDNFKK 84 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GHPVGDK++A ++ + +FV R GGEEFA G++ +E + +A +R+ Sbjct: 85 INDTYGHPVGDKILATVASVIRSNVRRDVFVARAGGEEFALIIEGNTAEEVSAIAERIRR 144 Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +E NS+ ++ GP IT+S GI + E + + D ALY AK +GRN +V Sbjct: 145 TLETTPFKNSRTRVNYGP---ITVSIGICMASNAEDAGELYSKTDIALYGAKNAGRNCIV 201 Query: 257 CFS 259 + Sbjct: 202 LYQ 204 >gi|319765034|ref|YP_004128971.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|317119595|gb|ADV02084.1| diguanylate cyclase [Alicycliphilus denitrificans BC] Length = 395 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 10/162 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N A + +L E +++ D+D+FK +ND GH GD+V+ ++ Sbjct: 222 DELTGVANRRALVQALDRDVAHAVRSGEPYALLMLDVDHFKSVNDGHGHRAGDQVLCHVA 281 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L VGR GGEEF G+ + AA LA LR+ +E + G I +T Sbjct: 282 AILRARLRAQDLVGRYGGEEFMVLLPGTPARGAAGLAKTLREAVEQTPCEY-GGRVIPVT 340 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S G+ A + +I+ ADQALY AK +GRNRV C + Sbjct: 341 VSIGVCSARLGSGDTWDRLIHAADQALYAAKAAGRNRVECVA 382 >gi|238790452|ref|ZP_04634222.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641] gi|238721478|gb|EEQ13148.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641] Length = 319 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 96/185 (51%), Gaps = 14/185 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132 LLG ++ K L + + ++S D L+GL N H+ F S Y +++ Sbjct: 135 LLGLVTYRTAKRLAENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 193 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191 DID FK IND FGH VGD+ I L+++L++ VGR GG+EF A ++ EQ Sbjct: 194 LLDIDNFKAINDTFGHAVGDEAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 253 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250 IL K+ + I + P++ + +SAGIA+ H + AD ALY+AK + Sbjct: 254 REILTRIQEKL---AGIVFTQAPTLQLKVSAGIADYRHDMINYQQWLKAADSALYLAKDN 310 Query: 251 GRNRV 255 GRNR+ Sbjct: 311 GRNRI 315 >gi|322434116|ref|YP_004216328.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9] gi|321161843|gb|ADW67548.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9] Length = 397 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+G LN A ++ L ++ D+D+FK++ND FGH GD + Sbjct: 222 ARTDSLTGALNRRALRVEGAREVARTLRSGHTLCLLLLDVDHFKELNDTFGHSAGDAALQ 281 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ Q+ V T + R GGEEF + ++A LR +++ I G +I Sbjct: 282 YMVQQVRGVLRTQDLLARSGGEEFTILLPETPLDRGELVAERLRLEVDSKDF-IYEGTAI 340 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 H+++S G+A H ++ RAD A+Y+AK+ GRNRV+ + Sbjct: 341 HLSVSVGVATLDPHCADFEALMRRADSAMYMAKRMGRNRVMAY 383 >gi|257485985|ref|ZP_05640026.1| GGDEF [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298486063|ref|ZP_07004133.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159411|gb|EFI00462.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330988649|gb|EGH86752.1| hypothetical protein PLA107_26732 [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010305|gb|EGH90361.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 358 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 20/222 (9%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L P L + + + + + + + +G++S + +L+ N + ++SR D L+GLLN Sbjct: 135 LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 194 Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 H A+ L + +++ I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 195 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 254 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222 +GR GG+EF + +A R+I+E +++ I S + +++S Sbjct: 255 DSDLIGRCGGDEFCVILPDTHLFQA-------REILERTRLAIDEMTYSLQRDLKVSLSI 307 Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 GIA + P S+ ++ AD+ALY+AK +GRN V D+ + Sbjct: 308 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDMPS 349 >gi|310821439|ref|YP_003953797.1| GAF domain/GGDEF domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309394511|gb|ADO71970.1| GAF domain/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1] Length = 720 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 9/176 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + ++ +++ D L+GLLNH F ++ Y KLS++ DID+FK +ND +GHP Sbjct: 537 FEQMERMATTDGLTGLLNHRTFQSKADEHLAQARRYQRKLSLILTDIDHFKSVNDTYGHP 596 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ L V R GGEEFA + + A ++A +R+ ++ Sbjct: 597 TGDAVLKGVAKILRDKARDTDIVARYGGEEFAIIMPETDAKGALVIAERIREAVKAEVFQ 656 Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 GP + +T+S GI+ H +I +DQ LY AK++GRN+ V + ++ Sbjct: 657 TEMGP-LKVTLSLGISTGPDHGYDKQHLIDLSDQCLYHAKRNGRNQSVTVAQMQGG 711 >gi|261250469|ref|ZP_05943044.1| putative sensory box/GGDEF family protein [Vibrio orientalis CIP 102891] gi|260939038|gb|EEX95025.1| putative sensory box/GGDEF family protein [Vibrio orientalis CIP 102891] Length = 325 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 102/179 (56%), Gaps = 10/179 (5%) Query: 91 KELFISYNRISQLSRI---DCLSGLLNHSAFISSLG-SYNEK----LSIVFFDIDYFKQI 142 KE+ S+ ++L R+ D L+G+LN AFI L +N LS + DID+FK+I Sbjct: 129 KEITQSHLHETELKRLAETDELTGILNRRAFIQGLECEFNAPAPLLLSCLMLDIDHFKEI 188 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GD+VI ++ + + ++GRLGGEEF ++ +A +A +R+ Sbjct: 189 NDQVGHLSGDEVITQVAHICQGLIRSSDYIGRLGGEEFGIVLSRTNAIQAYDIAERIRQS 248 Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 IE + ++ G I+ T+S GIAE I ++ +AD+A+Y +K++GRN+V + D Sbjct: 249 IETTPCHV-DGHIIYPTVSIGIAELNSQVSSIKELLVQADKAMYYSKQTGRNQVTLYYD 306 >gi|239908167|ref|YP_002954908.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239798033|dbj|BAH77022.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 420 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 16/176 (9%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+G N F ++ Y E LS+V FDID+FK +ND +GH GD Sbjct: 240 LAELAVTDQLTGAYNRLKFNEVMHTQVARSARYGEALSVVMFDIDHFKVVNDTYGHGAGD 299 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ L+ +++ ++ R GGEEF AA ++ AA+LA LR I+ Sbjct: 300 DMLRELARRVIEATRGVDWLFRYGGEEFVVAAPHTALGNAALLAEKLRLIVAGKPFPH-- 357 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV---CFSDIENNT 265 I +IS G+AE E + ++ R D ALY AK +GRNRV C S EN+T Sbjct: 358 --GIAGSISLGVAELKPGESVEELMARVDAALYTAKNAGRNRVAVAGCAS--ENDT 409 >gi|91778091|ref|YP_553299.1| diguanylate cyclase [Burkholderia xenovorans LB400] gi|91690751|gb|ABE33949.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 381 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 16/214 (7%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILK--ELFISYNRISQ----LSRIDCLSG 111 YG +++ L V S I L LG ++ L + ++++R+++ L+ ID L+G Sbjct: 169 MYGFGWLVQTGLLQVSPSNVIFLALGILAPLCLSIGVVMLAHDRLAERLERLANIDDLTG 228 Query: 112 LLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 L+ AF++ + L++ DID FK +NDN GH GD+V++ + + Sbjct: 229 ALSRRAFLAVGDALLNASRRTRSPLAMAIIDIDSFKAVNDNHGHAAGDQVLSHFATFVAR 288 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAG 223 T GRLGGEEF ++ EA L + LR ++ + + G + T S G Sbjct: 289 NLRTGDVFGRLGGEEFGVLCPATTTAEAVSLLDRLRIRLAATAPNGLPRG--LRYTFSVG 346 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + E ++ ++ RAD ALYVAK SGRNRV+ Sbjct: 347 VDQLRRDESLAQLMARADGALYVAKASGRNRVMA 380 >gi|330827229|ref|YP_004390532.1| diguanylate cyclase [Alicycliphilus denitrificans K601] gi|329312601|gb|AEB87016.1| diguanylate cyclase [Alicycliphilus denitrificans K601] Length = 395 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 10/162 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N A + +L E +++ D+D+FK +ND GH GD+V+ ++ Sbjct: 222 DELTGVANRRALVQALDRDVAHAVRSGEPYALLMLDVDHFKSVNDGHGHRAGDQVLCHVA 281 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L VGR GGEEF G+ + AA LA LR+ +E + G I +T Sbjct: 282 AILRARLRAQDLVGRYGGEEFMVLLPGTPARGAAGLAKTLREAVEQTPCEY-GGRVIPVT 340 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S G+ A + +I+ ADQALY AK +GRNRV C + Sbjct: 341 VSIGVCGARLGSGDTWDRLIHAADQALYAAKAAGRNRVECVA 382 >gi|268680356|ref|YP_003304787.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268618387|gb|ACZ12752.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 390 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 16/166 (9%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSI----------VFFDIDYFKQINDNFGHPVGD 152 L++ID L+ + N F L EK+++ + DID+FK++ND +GH VGD Sbjct: 224 LNQIDPLTNVSNRRVFERWL---EEKMTLYKTHRLSSCMIMMDIDFFKKVNDTYGHLVGD 280 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ L++++ + R GGEEFA +S + I+A LR+++E +I++ Sbjct: 281 EVLIALANRMKHYVRDNDCLVRFGGEEFALLLFNTSAKRGYIIAERLRRMVEALKISLPH 340 Query: 213 GPS--IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 PS I +T+S G++ + I II RAD+A+Y+AKK GRNRV Sbjct: 341 HPSACISVTMSFGMSTFLNYDTTIENIISRADKAMYLAKKEGRNRV 386 >gi|254227922|ref|ZP_04921352.1| ggdef domain protein [Vibrio sp. Ex25] gi|262396095|ref|YP_003287948.1| GGDEF family protein [Vibrio sp. Ex25] gi|151939418|gb|EDN58246.1| ggdef domain protein [Vibrio sp. Ex25] gi|262339689|gb|ACY53483.1| GGDEF family protein [Vibrio sp. Ex25] Length = 337 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 92/162 (56%), Gaps = 5/162 (3%) Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + Q + D LS L N AF +SSL + N+ ++++ DID+FK NDN+GH GD V+ Sbjct: 174 VQQDALFDGLSNLYNRRAFDKDLSSLIASNQAMTLIMLDIDHFKSFNDNYGHLFGDTVLK 233 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPS 215 ++ +L + R GGEEFA S + A A+ LR++IE +I + SG Sbjct: 234 AIARRLQQSCRDGICAYRFGGEEFALIVPNKSLRIARQYADTLRRMIEKLRIRDKRSGTQ 293 Query: 216 IH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +H IT S G+AE + ++ +AD+ LY AK+ GRNRV+ Sbjct: 294 VHSITASFGVAEYEVGDTPEALVNKADKQLYEAKQLGRNRVM 335 >gi|332706953|ref|ZP_08427013.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L] gi|332354218|gb|EGJ33698.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L] Length = 296 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 9/176 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143 +E + + +S+++ +D L+ L N A S L S + LS++ D+DYFK IN Sbjct: 117 REAMHTNDFLSRIALVDPLTELSNRRAMESELPRQVKNAFSQSRPLSLIILDVDYFKSIN 176 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 DN+GHPVGD+ + L+ +L + R GGEEF + +EA +AN +R II Sbjct: 177 DNYGHPVGDRALKLLASRLKHNLRIQDSLFRYGGEEFVIILSHTDCEEARAVANRVRHII 236 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + I + ITIS G+A +++ ADQ L +AK +GRN+V C Sbjct: 237 SDQPFQIDRRLVLPITISLGVAALNNTDDHRGESLLRSADQNLRIAKSNGRNQVYC 292 >gi|289624169|ref|ZP_06457123.1| GGDEF [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869353|gb|EGH04062.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 358 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 20/223 (8%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L P L + + + + + + + +G++S + +L+ N + ++SR D L+GLLN Sbjct: 135 LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 194 Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 H A+ L + +++ I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 195 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 254 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222 +GR GG+EF + +A R+I+E +++ I S + +++S Sbjct: 255 DSDLIGRCGGDEFCVILPDTRLFQA-------REILERTRLAIDEMSYSLQRDLKVSLSI 307 Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 GIA + P S+ ++ AD+ALY+AK +GRN V D+ + Sbjct: 308 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDMPSE 350 >gi|70731874|ref|YP_261616.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens Pf-5] gi|68346173|gb|AAY93779.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens Pf-5] Length = 356 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 12/170 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 +S LSR D L+GLLNH ++ L K SI DID+FK IND +GH +GD Sbjct: 180 LSALSRTDSLTGLLNHGSWKDLLHIKFHKCQQQQIDASIALIDIDHFKAINDTYGHIIGD 239 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ LS++L GR GG+EF Q+A + LR++ SQ Sbjct: 240 TVLRHLSNELRRNLRHDDLAGRYGGDEFCVILPRMDRQQALEVMERLRQVF--SQYRHPQ 297 Query: 213 GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +++S G+A +R ++P S+ + AD+ALY+AK SGRNR+ D Sbjct: 298 VAELKVSLSIGLAAFDREFQDP-SSWLNAADKALYLAKNSGRNRIASNDD 346 >gi|313607993|gb|EFR84099.1| ggdef domain-containing protein [Listeria monocytogenes FSL F2-208] Length = 301 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N F + ++N LS++ DIDYFK++ND +GH VG+ Sbjct: 128 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 187 Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 188 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 247 Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA R + P + ++ ADQALY AK++GRN+V Sbjct: 248 ASGSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 292 >gi|260463951|ref|ZP_05812147.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] gi|259030326|gb|EEW31606.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] Length = 356 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 86/166 (51%), Gaps = 8/166 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVF-----FDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+ + N AF + YN I+F DID FK IND +GHPVGDK+I Sbjct: 175 RLADTDPLTHIWNRRAFDKEITRIYNSNKGILFNALILADIDRFKDINDRYGHPVGDKII 234 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++ MFV R GGEEFA G+SE ++ +R +IE + S + Sbjct: 235 QIIAEIFQTSIRGDMFVARTGGEEFALIIEGASEDATYDISERIRALIEQTPFTSSQTGA 294 Query: 216 IH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +T+S GI + + +AD+ALY +K SGRNRV S Sbjct: 295 NYGTVTVSMGICMASEADGPEDLYTKADRALYRSKVSGRNRVTRHS 340 >gi|254475311|ref|ZP_05088697.1| response regulator PleD [Ruegeria sp. R11] gi|214029554|gb|EEB70389.1| response regulator PleD [Ruegeria sp. R11] Length = 270 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 99/184 (53%), Gaps = 12/184 (6%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133 L+G +S ++EL +Y + + D L+ + N F+ +L + E LS+ Sbjct: 75 LVGILS---IRELTKAYELLQIEANTDPLTQVSNRRPFLKTLETNFENALEIGLPLSVAM 131 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D+FK IND++GH GDKV+ LS L+ F T VGRLGGEEFA + A Sbjct: 132 LDVDHFKLINDSYGHDAGDKVLQELSRMLIREFRTVDLVGRLGGEEFALVFPETDLAGAF 191 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252 I LRK +E I+ + G I +T+S G+ E ++++ RAD+ LY AK GR Sbjct: 192 IACERLRKSVEQQVIH-AHGHKIRLTVSIGLTEIAGGFVNGASLLKRADELLYSAKSGGR 250 Query: 253 NRVV 256 N+VV Sbjct: 251 NQVV 254 >gi|158336700|ref|YP_001517874.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158306941|gb|ABW28558.1| diguanylate cyclase (GGDEF domain), putative [Acaryochloris marina MBIC11017] Length = 420 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 98/180 (54%), Gaps = 11/180 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 K+L + ++S ++ D L+GL N F L + LS++ DID+FKQ N Sbjct: 238 KKLDEANKQLSLIANHDALTGLANRRRFDEYLQQIWKQTQREQQPLSLLICDIDFFKQYN 297 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD + ++ ++ P+ V R GGEEFA + + ++A LR I Sbjct: 298 DTYGHLEGDICLRTVAQKIHQTIVRPLDLVARFGGEEFAIVLPNTDLEGGQVVAERLRMI 357 Query: 203 IENSQI-NISSGPSIHITISAGIAE-RCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259 I+ SQ+ + S S +T+S G A R H +S++I RADQALY AK+SGR++VV S Sbjct: 358 IQKSQLPHRGSSVSEFVTVSIGAATVRSHPHTSVSSLISRADQALYQAKQSGRDQVVALS 417 >gi|34499692|ref|NP_903907.1| GGDEF family protein [Chromobacterium violaceum ATCC 12472] gi|34105543|gb|AAQ61897.1| probable GGDEF family protein [Chromobacterium violaceum ATCC 12472] Length = 490 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 10/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QL+ D L+G LN AF+ L + + ++ DID+FKQ+ND GH + Sbjct: 315 RRMRQLATTDPLTGCLNRLAFLDLLPGWLRACERTGAEPQLLMIDIDHFKQVNDKHGHQI 374 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++D L + R GGEEF E +A LA LR + + Sbjct: 375 GDQVLREIADLLRSQLRGSDLLIRWGGEEFVVLVGSHGEDDA--LAERLRTAVAR-HVMS 431 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +SG + +T+S G+ + E + + RAD ALY AK+ GRNRV Sbjct: 432 ASGKRLTVTVSLGLCQWLPPETLEAAVARADLALYAAKQGGRNRV 476 >gi|86137571|ref|ZP_01056148.1| GGDEF domain protein [Roseobacter sp. MED193] gi|85825906|gb|EAQ46104.1| GGDEF domain protein [Roseobacter sp. MED193] Length = 313 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 12/185 (6%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133 L+G +S ++EL +Y + + D L+ + N F+ +L + E+ +S+ Sbjct: 113 LVGILS---IRELTKAYELLQIEANTDPLTRVSNRRPFLKTLEAQFEQARQRRMPMSVAM 169 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D+FK+IND +GH GDK + LS L+ F + VGRLGGEEFA + A Sbjct: 170 LDVDHFKRINDTYGHDAGDKTLQALSRLLISEFRSIDLVGRLGGEEFALVFPDTDLVGAY 229 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGR 252 LR ++++ +I ++ I +T+S G+ E H ++ RAD LYVAK SGR Sbjct: 230 SACERLRAMVQSKEI-LADKHKIRLTVSIGLTESAEHISAAPLLLKRADALLYVAKNSGR 288 Query: 253 NRVVC 257 N+V+ Sbjct: 289 NKVMA 293 >gi|320335021|ref|YP_004171732.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] gi|319756310|gb|ADV68067.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] Length = 568 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +++L+R D L+G+ N F+ L + + + D D+FK IND FGHP GD+V+ Sbjct: 410 LARLAREDALTGVANRRHFMDHLTLQARHAPTFAAIVLDADHFKSINDQFGHPTGDEVLR 469 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + L V RLGGEEF L + A +A +R + + P Sbjct: 470 VIGRVLQQHVRAGDVVARLGGEEFGVLLLDADRARALDVAERIRAAL-ATHPWADVAPGA 528 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 H+T+SAG+A + +I AD+ LY AK+ GR+RVV Sbjct: 529 HVTVSAGVAHATEVDSPDALIALADRRLYQAKQGGRDRVV 568 >gi|152997893|ref|YP_001342728.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150838817|gb|ABR72793.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 355 Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 27/242 (11%) Query: 30 YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89 YF FFS+F+ + I + F ++P+ E L++ L S+ S+ + + + Sbjct: 126 YFGQFFSVFVPIPLVIIE-YCFPELISPYTDNETRLID---LASTSVVTSIFMLLMMENQ 181 Query: 90 LKELFISYNRISQLSRI-------DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYF 139 K+ + +++ QLS D L+GLLN +F++S + E +I DID+F Sbjct: 182 TKKFLLRQSKVEQLSEQLRQLSEQDALTGLLNRRSFVNSFVEWKETKEYFTIAAVDIDFF 241 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEF---AAAALGSSEQEAAIL 195 KQ+ND +GH GD+V+ S L + + R GGEEF +L + Q IL Sbjct: 242 KQVNDQWGHQYGDEVLIKASTLLAEISKENNALAFRTGGEEFMLMMPYSLNEAYQHIQIL 301 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +++ + +GP +T S+G+AE E + R D+ LY AK GRNR Sbjct: 302 HDRF------AEMKLLNGP---VTFSSGLAEVKQDESQDQFLKRVDRLLYQAKNQGRNRT 352 Query: 256 VC 257 V Sbjct: 353 VV 354 >gi|218694243|ref|YP_002401910.1| conserved hypothetical protein; putative membrane protein (8 predicted transmembrane domain) [Escherichia coli 55989] gi|309797949|ref|ZP_07692328.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] gi|218350975|emb|CAU96679.1| conserved hypothetical protein; putative membrane protein (8 predicted transmembrane domain) [Escherichia coli 55989] gi|308118437|gb|EFO55699.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] Length = 443 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 100/183 (54%), Gaps = 8/183 (4%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQ 141 YI +++ +F N + ++ D L+ N FI SL S + S++ DID FK Sbjct: 263 YIISTLMYYVFRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDNFKS 322 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GH +GD+VI ++ + +GRLGGEEF G++++ +A +RK Sbjct: 323 INDKWGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRK 382 Query: 202 IIEN--SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IE S+ +S GP IT+S G ++ + P S ++ AD+ALY AK++G+N+V+ Sbjct: 383 NIEEQCSEKLLSHGPE-KITVSIGCFTSKENNLSP-SEMLVNADKALYQAKRTGKNKVIT 440 Query: 258 FSD 260 S Sbjct: 441 HSK 443 >gi|226942971|ref|YP_002798044.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ] gi|226717898|gb|ACO77069.1| GGDEF domain protein [Azotobacter vinelandii DJ] Length = 448 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 23/182 (12%) Query: 88 SILKELFISYNRISQLSR---IDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQ 141 +IL L + + R+ +LS+ D L+GL N + L + ++ +++ DID+FKQ Sbjct: 276 AILGSLALLHQRLGKLSQESLTDPLTGLANRRRLQAQLERWQQQRQPFAVIALDIDHFKQ 335 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +NDN GH GD+V+ +L+ Q+ + R GGEEF G+S + A +A +R Sbjct: 336 VNDNHGHESGDRVLQYLARQMNECSRASDLLCRNGGEEFLMLLPGASLEAARQVAERVR- 394 Query: 202 IIENSQINISSG---PSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNR 254 +++ +SG PS +T+SAG+A H S ++ RAD ALY AK +GRNR Sbjct: 395 ----ARMGAASGEDCPS--VTVSAGVA---HWPDTSASAEEVLKRADAALYQAKHAGRNR 445 Query: 255 VV 256 VV Sbjct: 446 VV 447 >gi|209809677|ref|YP_002265216.1| putative GGDEF protein [Aliivibrio salmonicida LFI1238] gi|208011240|emb|CAQ81675.1| putative GGDEF protein [Aliivibrio salmonicida LFI1238] Length = 322 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 90/172 (52%), Gaps = 11/172 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGH 148 S ++S LS+ D L+ L N + + S L E SIV FDID+FKQ+ND +GH Sbjct: 148 SNQQLSNLSKTDGLTNLFNRAYWESCLKKEFETAQVSGAVSSIVIFDIDHFKQVNDTYGH 207 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD VI SD L GR GGEEF G++ ++A LRK IE + + Sbjct: 208 TVGDDVIRNASDLLRKTSRNTDICGRYGGEEFTVILPGTNAEQALYFTERLRKRIEKAVV 267 Query: 209 NISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + ++ +S G+ E H + +S + AD+ALY +K++GRNR + Sbjct: 268 -VCEKANVSYQVSLGVCELAPEHTDYLS-WLEMADKALYHSKENGRNRSTVY 317 >gi|330939045|gb|EGH42501.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 418 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N + I ++ + S++ DID+FK +ND +GHP Sbjct: 255 QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 314 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI ++ L R GGEEF SS ++AA LA +RK +E+ I Sbjct: 315 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRKSVESLVIPE 374 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +TIS G+AE E +++I RAD+ALY AK+ GRNRV C Sbjct: 375 TGS----VTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRVEC 417 >gi|294010711|ref|YP_003544171.1| putative diguanylate cyclase [Sphingobium japonicum UT26S] gi|292674041|dbj|BAI95559.1| putative diguanylate cyclase [Sphingobium japonicum UT26S] Length = 593 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 6/160 (3%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 + Q++ +D L+G AF+ L + + ++ DID+FK +ND +GH GD+ Sbjct: 428 LQQVAALDSLTGADTRRAFLEKLEEEMLRVRHGARACLLLIDIDHFKAVNDCYGHGAGDR 487 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+A ++L +GRLGGEEFA G+ A+++ LR+++ + I SG Sbjct: 488 VLAGFVERLRPGLRGGDSIGRLGGEEFAILLSGTDVVRASMICERLREMVTAHPVQIDSG 547 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I +T SAG+ + ++ AD+ALY AK SGRN Sbjct: 548 EVIPVTFSAGLVGLGSQSDAQAVLEAADKALYNAKHSGRN 587 >gi|229158975|ref|ZP_04287032.1| GGDEF domain protein [Bacillus cereus ATCC 4342] gi|228624586|gb|EEK81356.1| GGDEF domain protein [Bacillus cereus ATCC 4342] Length = 351 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 SIFI + F N++ I + P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGL-------LNHSAFISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL L + IS+ + N+ L ++F DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQLDLEMNRHISNKRTKNDSLCLLFIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L + P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKQIGCILREISPFPDLAFRKGGEEFALLIPQKGLAYGMHMGEQVRAA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHLFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|158319873|ref|YP_001512380.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus oremlandii OhILAs] gi|158140072|gb|ABW18384.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus oremlandii OhILAs] Length = 541 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +S L + EK +++ D+D FK +ND +GHPVGD+ + + Sbjct: 385 DELTGLYNRHFLVSYLKNEIEKAEAEDQPMTMAILDLDQFKLVNDTWGHPVGDEQLKHTA 444 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ V + + R GGEE ++ +A I+ +R IEN+Q I+ T Sbjct: 445 KTILRVIRSTDLLVRYGGEELVIIMEKTNIDDAKIVLEKIRMAIENNQYPITG----RQT 500 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G AER E RADQALY AK GRNRV+C Sbjct: 501 VSIGAAERAKSELFVDWYKRADQALYHAKNRGRNRVIC 538 >gi|332312351|gb|EGJ25446.1| GGDEF domain protein [Listeria monocytogenes str. Scott A] Length = 383 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N F + ++N LS++ DIDYFK++ND +GH VG+ Sbjct: 210 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 269 Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 270 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 329 Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA R + P + ++ ADQALY AK++GRN+V Sbjct: 330 ASGSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 374 >gi|320325418|gb|EFW81483.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] Length = 305 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 20/220 (9%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L P L + + + + + + + +G++S + +L+ N + ++SR D L+GLLN Sbjct: 82 LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 141 Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 H A+ L + +++ I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 142 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 201 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222 +GR GG+EF + +A R+I+E +++ I S + +++S Sbjct: 202 DSDLIGRCGGDEFCVILPDTHLFQA-------REILERTRLAIDEMTYSLQRDLKVSLSI 254 Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261 GIA + P S+ ++ AD+ALY+AK +GRN V D+ Sbjct: 255 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDM 294 >gi|242237803|ref|YP_002985984.1| diguanylate cyclase with hemerythrin-like metal-binding domain [Dickeya dadantii Ech703] gi|242129860|gb|ACS84162.1| diguanylate cyclase with hemerythrin-like metal-binding domain [Dickeya dadantii Ech703] Length = 531 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 22/219 (10%) Query: 48 IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL---- 103 I L Y G TPF +L + + + +T + L +I+ ++ ++ +R L Sbjct: 166 ILLIYTGATPFS----VLSSSTAQTVTYMTSFMTLLFIANGMI---MMAKDRAEHLNNLM 218 Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+G N + L Y +S++ FD+D+FK++ND FGH VGDKV+ Sbjct: 219 ARQDSLTGCWNRIRIQEIARQEMERLERYGYPVSLLMFDLDHFKEVNDKFGHSVGDKVLK 278 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 SD + + T GR GGEEF A + A A +R +E + + Sbjct: 279 GFSDTALALLRTTDVFGRWGGEEFVAILPATGFTGAVQTAERIRAALEAQ----TFPGGV 334 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IT S G++ + + + RAD ALY AK +GRNR Sbjct: 335 KITTSIGVSVCQSTDHWESWLGRADAALYRAKAAGRNRT 373 >gi|217963937|ref|YP_002349615.1| ggdef domain protein [Listeria monocytogenes HCC23] gi|217333207|gb|ACK39001.1| ggdef domain protein [Listeria monocytogenes HCC23] gi|307571493|emb|CAR84672.1| GGDEF domain membrane protein [Listeria monocytogenes L99] Length = 378 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N F + ++N LS++ DIDYFK++ND +GH VG+ Sbjct: 205 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 264 Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 265 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 324 Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA R + P + ++ ADQALY AK++GRN+V Sbjct: 325 ASGSV-ITISAGIANYDGRNYSNP-NELLNAADQALYNAKRNGRNQV 369 >gi|71278036|ref|YP_270580.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71143776|gb|AAZ24249.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 364 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 9/168 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S N + +LS +D L+ + N F I++ + +S++ DID FK++NDN+GH Sbjct: 196 SVNELHRLSIMDNLTNIYNRRYFFEMSKKLIATAFREQKPVSLIMLDIDLFKRVNDNYGH 255 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD ++ L +L V R+GGEEF +S + A ++A +R IEN ++ Sbjct: 256 QAGDCILIDLVKELEKVMRKSDVFARIGGEEFTILLNNTSLEGAKVIAEKMRLTIEN-KV 314 Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I + SI ITIS G++E I + +AD+ LY AK GRNRV Sbjct: 315 FIYNTTSIDITISIGVSELNTENTSIEDLYKQADKQLYRAKHKGRNRV 362 >gi|330877341|gb|EGH11490.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 296 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 20/220 (9%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L P L + + + + + + + +G++S + +L+ N + ++SR D L+GLLN Sbjct: 73 LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 132 Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 H A+ L + +++ I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 133 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 192 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222 +GR GG+EF + +A R+I+E +++ I S + +++S Sbjct: 193 DSDLIGRFGGDEFCVILPDTHLFQA-------REILERTRLAIDEMTYSLQRDLKVSLSI 245 Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261 GIA + P S+ ++ AD+ALY+AK +GRN V D+ Sbjct: 246 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDM 285 >gi|330447115|ref|ZP_08310765.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491306|dbj|GAA05262.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 536 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 22/203 (10%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------ 123 +LV I+I +SL+L Y + I+ RI+ L+ D L+GL+N AF++ Sbjct: 341 TLVYIAIILSLVLSYWFARYQLKEHINNQRINVLAHHDGLTGLVNRMAFVNQANLMLESC 400 Query: 124 SYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA- 181 ++EK + +++ D+D FK IND +GH GDKV+ ++ + VFG + RLGG+EFA Sbjct: 401 MHDEKSACLLYIDLDDFKPINDQYGHATGDKVLIHMASIMRKVFGKQALLARLGGDEFAV 460 Query: 182 ----AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--T 235 A L S Q AA L L E P +I I + I C I+ Sbjct: 461 LLSSAKHLESPVQYAASLQQLLGCPFE-------VAPDTYIHIHSSIGGCCFNGEITLEE 513 Query: 236 IIYRADQALYVAKKSGRNRVVCF 258 ++++AD A+Y AK+ G+N+ CF Sbjct: 514 LMHQADMAMYQAKRKGKNQ-TCF 535 >gi|289435516|ref|YP_003465388.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171760|emb|CBH28306.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 357 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 106/198 (53%), Gaps = 15/198 (7%) Query: 74 ISITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128 I + ISL++G +S ++ + S + + Q S +D L+ L N F + +K Sbjct: 162 IFVVISLVIGVVSAGLMNNMIKSKQLFQKYEQDSTLDYLTQLSNVRQFDEKINHVVDKSG 221 Query: 129 --LSIVFFDIDYFKQINDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 ++++ DID+FK IND +GH GD K +AF+ + G+ F R GGEEF+ Sbjct: 222 RQVALLLIDIDFFKNINDTYGHDAGDAILKQLAFILKE-STTDGSEAF--RNGGEEFSLI 278 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQ 242 L S +E A +RK E I SG ++ ITIS G++ ++ S +++ AD+ Sbjct: 279 LLDYSVEEGNYFAEHIRKETEEHHFLIPSGQTVKITISIGVSGSHNEVTTSERLFKSADE 338 Query: 243 ALYVAKKSGRNRVVCFSD 260 ALY AK +GRNR VC +D Sbjct: 339 ALYKAKLTGRNR-VCIAD 355 >gi|307294034|ref|ZP_07573878.1| diguanylate cyclase with PAS/PAC sensor [Sphingobium chlorophenolicum L-1] gi|306880185|gb|EFN11402.1| diguanylate cyclase with PAS/PAC sensor [Sphingobium chlorophenolicum L-1] Length = 593 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 6/160 (3%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDK 153 + Q + +D L+G AF+ L ++ S++ DID+FK +ND GH GD+ Sbjct: 428 LQQAAALDSLTGADTRRAFLEKLEEEMSRVRRGGRASLLLIDIDHFKAVNDCHGHGAGDR 487 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+A ++L +GRLGGEEFA G+ + A+++ LR+++ + I SG Sbjct: 488 VLAGFVERLRPGLRGVDSIGRLGGEEFAILLSGTDVERASMICERLREMVSAHPVRIDSG 547 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I +T SAG+ + ++ AD+ALY AK SGRN Sbjct: 548 EMIRVTFSAGLVSLGSQSDGQAVLDAADKALYNAKHSGRN 587 >gi|303249290|ref|ZP_07335522.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] gi|302489296|gb|EFL49253.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] Length = 402 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 14/194 (7%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSL 122 S+++I + LL SG + EL + + + + ++ D L+GL N F+ Sbjct: 201 SMLLIPLLAFCLLSMTSGRVEAELREARDALRKQAQTDFLTGLPNRRHFLHLAEKALDRA 260 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 E +S + D+DYFK IND +GH GD V+ ++ +L +GRLGGEEF Sbjct: 261 RERGEPVSFIMLDLDYFKDINDTYGHQTGDVVLRAVARRLAEALRDGDEIGRLGGEEFGV 320 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 G ++A +A LR+ + + P H T++A + ++ ++ RAD Sbjct: 321 LLPGLDGKDAEEVAERLRQAVA------ALSPGGH-TVTASLGMASGATGLNALLARADG 373 Query: 243 ALYVAKKSGRNRVV 256 LY AK +GRNRVV Sbjct: 374 CLYAAKGAGRNRVV 387 >gi|283850372|ref|ZP_06367661.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] gi|283574398|gb|EFC22369.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] Length = 290 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 67/192 (34%), Positives = 100/192 (52%), Gaps = 18/192 (9%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVF 133 ++ YI +L E + + + + D L+GL N F + +EK S++ Sbjct: 96 VIKYIKNPVLIEEWQLKEKENSADK-DELTGLFNRRYFNQQMHQESEKFRRFGSPFSLLM 154 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DID+FK+ ND GH GD+V+ ++D L + V R GGEEFA ++ ++AA Sbjct: 155 IDIDHFKRFNDTNGHQAGDEVLKIVADVLTRIGRAYDKVTRYGGEEFAVILPLTTRKDAA 214 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAK 248 A LR IE +I + H+T+S GIA C PI + ++ RADQALYVAK Sbjct: 215 NAAERLRTAIEKQRILFAGKDLGHVTVSIGIAT-C---PIDSLDKTMLVQRADQALYVAK 270 Query: 249 KSGRNRVVCFSD 260 ++ RN VV + D Sbjct: 271 RT-RNAVVAYCD 281 >gi|262376898|ref|ZP_06070125.1| diguanylate cyclase (GGDEF) domain-containing protein [Acinetobacter lwoffii SH145] gi|262308243|gb|EEY89379.1| diguanylate cyclase (GGDEF) domain-containing protein [Acinetobacter lwoffii SH145] Length = 229 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 96/186 (51%), Gaps = 13/186 (6%) Query: 90 LKELFISYNR--ISQLSRIDCLSGLLNHSAF---ISSLGSYN----EKLSIVFFDIDYFK 140 L+ YNR ++ D L+GL N F L N ++++ FD+D+FK Sbjct: 31 LQHTLNEYNRQAFENMAHTDSLTGLNNRRCFEYLAQQLVQQNFDQPVPMNLLVFDVDHFK 90 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 QIND +GH +GD+V+ L+ + R GGEEF A +S EA +A LR Sbjct: 91 QINDRYGHDIGDQVLQTLALSTRSEMRQHDILARYGGEEFIAFLPETSLDEALKVAERLR 150 Query: 201 KIIENSQINISSGP--SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 IEN I++ S S I+I A I E C + + T+I +AD ALY AK +GRNRV + Sbjct: 151 HNIENIVIDLDSQHRFSFSISIGAAILESCETD-LMTLIKQADIALYQAKANGRNRVEAY 209 Query: 259 S-DIEN 263 D+E Sbjct: 210 DPDLEQ 215 >gi|149909188|ref|ZP_01897845.1| Putative diguanylate cyclase (GGDEF domain) [Moritella sp. PE36] gi|149807712|gb|EDM67658.1| Putative diguanylate cyclase (GGDEF domain) [Moritella sp. PE36] Length = 446 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 9/176 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 KEL ++ R L+ D ++G+ N +F+ Y +++ D+D FKQIN Sbjct: 263 KELEVALARAEHLATTDVMTGIPNRRSFMDQAEKRHAEWLRYKRPYALLMIDLDTFKQIN 322 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GHP GD+V+ ++ L +GR+GGEEF A +G SE A L +R I Sbjct: 323 DTYGHPAGDQVLISVAAVLQQHTRCEDIIGRIGGEEFCALLVGVSEVGAINLTERIRAEI 382 Query: 204 ENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I G SI +T S G + +E ++ DQ LY AK GRNRV + Sbjct: 383 AKLPIEF-GGQSIPVTASFGLVPPESLQEDFDEVLKHGDQMLYQAKNEGRNRVCIY 437 >gi|238791632|ref|ZP_04635270.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909] gi|238729248|gb|EEQ20764.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909] Length = 300 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 96/185 (51%), Gaps = 14/185 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132 LLG ++ K L S + ++S D L+GL N H+ F S Y +++ Sbjct: 116 LLGLVTYRTAKRLAESKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 174 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191 DID FK IND FGH VGD+ I L+++L++ VGR GG+EF A ++ EQ Sbjct: 175 LLDIDNFKAINDTFGHAVGDEAITILAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 234 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250 +L K+ + + + P++ + +SAGIA+ H + AD ALY+AK + Sbjct: 235 REVLTRIQEKL---AALVFTQAPTLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDN 291 Query: 251 GRNRV 255 GRNR+ Sbjct: 292 GRNRI 296 >gi|257094145|ref|YP_003167786.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046669|gb|ACV35857.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 447 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 8/176 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +++E + ++ +L+ D L+G+ N F I Y+ + + D+D+FK Sbjct: 245 VMQENETTREQLERLATTDGLTGMFNRRHFLAVAEEEIKRAQRYSRPICVGMADLDFFKH 304 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND+ GH GD V+ +++ + R GGEEFA + +EA LA LR+ Sbjct: 305 INDSHGHASGDLVLQSVAEIFARTLRHSDWGCRFGGEEFAFVFPETGLREAHRLAERLRQ 364 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 SQI ++ G + IT+S G+A+ P+ + RAD ALY AK+ GRNRVV Sbjct: 365 SAAASQIALADGSRVDITLSLGLAD-ASSCPLEIALQRADAALYDAKQQGRNRVVT 419 >gi|46908144|ref|YP_014533.1| GGDEF domain-containing protein [Listeria monocytogenes serotype 4b str. F2365] gi|254825594|ref|ZP_05230595.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194] gi|254852814|ref|ZP_05242162.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503] gi|254931918|ref|ZP_05265277.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262] gi|255520925|ref|ZP_05388162.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-175] gi|300763779|ref|ZP_07073776.1| hypothetical protein LMHG_10681 [Listeria monocytogenes FSL N1-017] gi|46881414|gb|AAT04710.1| GGDEF domain protein [Listeria monocytogenes serotype 4b str. F2365] gi|258606142|gb|EEW18750.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503] gi|293583470|gb|EFF95502.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262] gi|293594837|gb|EFG02598.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194] gi|300515515|gb|EFK42565.1| hypothetical protein LMHG_10681 [Listeria monocytogenes FSL N1-017] gi|328466261|gb|EGF37418.1| GGDEF domain-containing protein [Listeria monocytogenes 1816] Length = 378 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N F + ++N LS++ DIDYFK++ND +GH VG+ Sbjct: 205 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 264 Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 265 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 324 Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA R + P + ++ ADQALY AK++GRN+V Sbjct: 325 ASGSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 369 >gi|167951158|ref|ZP_02538232.1| diguanylate cyclase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 258 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 86/157 (54%), Gaps = 9/157 (5%) Query: 106 IDCLSGLLNHSAFISS------LGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+G+ N +AF+S+ L S N +LSI+ D+DYFK+IND +GH VGD V+ + Sbjct: 100 IDALTGVKNRAAFVSNFNRELDLASRNGTELSIIMLDVDYFKRINDKYGHTVGDMVLKNI 159 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + + + R GGEEF G+ + A LA +RK +E ++ SS + Sbjct: 160 ALAVEASVRSSDALYRYGGEEFVITLSGTCAEGAYQLAERIRKNVE--ALSFSSPKGLQA 217 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+A E T+ RAD ALY AK GRN+ Sbjct: 218 RLSLGVATLQKNESGETLFKRADAALYCAKGQGRNQT 254 >gi|170722393|ref|YP_001750081.1| diguanylate cyclase [Pseudomonas putida W619] gi|169760396|gb|ACA73712.1| diguanylate cyclase [Pseudomonas putida W619] Length = 469 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 13/169 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFI---SSLGSYNEK------LSIVFFDIDYFKQINDNFGHP 149 R++ + ID L+G L SAF ++L +K L+++ DID+FK IND GH Sbjct: 292 RLAHQATIDHLTGALTRSAFTRRANALLDSRQKHAQALPLTLMMLDIDHFKSINDRHGHG 351 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ + L + R+GGEEF G + + A+ A LR+ +++ + Sbjct: 352 VGDQVLRQFARTLQDQLHGGELLARMGGEEFVVLLPGLAPERASFTAERLRRAVQDLHLA 411 Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255 G IT+S G+ EP T ++ RADQALY AK GRNRV Sbjct: 412 KGDG-RPQITVSIGLDGCAGHEPAPTLDELLARADQALYRAKAHGRNRV 459 >gi|300932099|ref|ZP_07147387.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] gi|300460134|gb|EFK23627.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] Length = 443 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 100/183 (54%), Gaps = 8/183 (4%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQ 141 YI +++ +F N + ++ D L+ N FI SL S + S++ DID FK Sbjct: 263 YIISTLMYYVFRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDNFKS 322 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GH +GD+VI ++ + +GRLGGEEF G++++ +A +RK Sbjct: 323 INDKWGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRK 382 Query: 202 IIEN--SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IE S+ +S GP IT+S G ++ + P S ++ AD+ALY AK++G+N+V+ Sbjct: 383 NIEEQCSKKLLSHGPE-EITVSIGCFTSKENNLSP-SEMLVNADKALYQAKRTGKNKVIT 440 Query: 258 FSD 260 S Sbjct: 441 HSK 443 >gi|94311200|ref|YP_584410.1| diguanylate cyclase [Cupriavidus metallidurans CH34] gi|93355052|gb|ABF09141.1| putative signaling protein (GGDEF domain) [Cupriavidus metallidurans CH34] Length = 237 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 82/153 (53%), Gaps = 6/153 (3%) Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+G LN A I + L+++ DID+FK++ND+FGHPVGD VI ++ L Sbjct: 84 DTLTGALNRGAVIDRATAALARGSLALIVIDIDHFKRLNDDFGHPVGDAVICGVTACLKD 143 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAG 223 +GR+GGEEFAA + AA LA+ +R+ I + P + +T S G Sbjct: 144 TVRMEGVIGRMGGEEFAALLPDFTIDAAATLADQMRQAIAGHRF---PAPVNREVTASFG 200 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ P RAD+ALY AK+ GRNRV Sbjct: 201 VSWSPQGRPFEHAYGRADEALYEAKRGGRNRVT 233 >gi|269963603|ref|ZP_06177926.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831616|gb|EEZ85752.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 539 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 12/198 (6%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119 E L+ + + +S++L Y FI RI L+ D L+GLLN +AF I Sbjct: 339 ERKWLMQVGVVLSIILAYFIARFQLRAFIDNQRIHHLAHHDSLTGLLNRAAFQAGATETI 398 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 S +K +V+ D+D FK IND +GH GDK + ++ + +FG+ + RLGG+E Sbjct: 399 SQSVKAGKKACLVYLDLDGFKFINDEYGHAAGDKTLEHVASVMNRIFGSKALLARLGGDE 458 Query: 180 FAAAALGSSE--QEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTI 236 F A L S E Q A L ++I++ I + +T S G + + + Sbjct: 459 F-AILLSSQEHMQSPEHYAASLIQLIQDP-IEVLPDTFHQVTTSIGGCYTKGQDCTLEEL 516 Query: 237 IYRADQALYVAKKSGRNR 254 +++AD A+Y AKK+G+NR Sbjct: 517 MHQADMAMYEAKKAGKNR 534 >gi|319424657|gb|ADV52731.1| diguanylate cyclase [Shewanella putrefaciens 200] Length = 486 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 107/211 (50%), Gaps = 23/211 (10%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLL 113 L F+G NL+L +I +T+ +L +IS L Y R + ++ D L+G Sbjct: 288 LNTFWG-------NLALSLI-VTMGIL--FISNMTLGR----YQRKLEMMASTDKLTGAA 333 Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N F +K +SI+ DID+FK++ND++GH +GD V+ +++ L + Sbjct: 334 NRQVFEEYFRQALDKAKLTQSPISILLLDIDHFKKVNDSYGHGMGDLVLKTMANMLRSLL 393 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 + R GGEEF AA A +R +I +I + +G I IT S G+AE Sbjct: 394 QPQDILCRWGGEEFLILLPEMDLSRAAEFAEQIRDLISLREIKV-NGLHISITASIGVAE 452 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +EP +I RAD ALY AK +GRN+VV Sbjct: 453 HQAQEPAEDLIKRADLALYQAKAAGRNQVVL 483 >gi|73541842|ref|YP_296362.1| GGDEF [Ralstonia eutropha JMP134] gi|72119255|gb|AAZ61518.1| GGDEF [Ralstonia eutropha JMP134] Length = 411 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 12/171 (7%) Query: 94 FISYNRISQL----SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 ++++R+ ++ + D L+GLL +AF +L + + + L++ F D+D+FK I Sbjct: 214 LMAHDRLRRMLEHKASHDDLTGLLARTAFWQALEAASTHVDRHGKPLTVAFIDLDHFKAI 273 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD V+ + L G +GRLGGEEFA ++ + ++ L Sbjct: 274 NDVYGHLAGDSVLRHFAGLLRKTAGPEDIIGRLGGEEFAVVMPDTTIERGRAVSMHLSTT 333 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + N+ S +I T S G+A+R E + +++ RADQALY AK+ GRN Sbjct: 334 VRNTPCP-SEPDAIAYTASIGMAQREPGESVDSLMRRADQALYDAKQRGRN 383 >gi|91780057|ref|YP_555265.1| diguanylate cyclase [Burkholderia xenovorans LB400] gi|91692717|gb|ABE35915.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 312 Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 11/202 (5%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 L+ +V + +TIS + ++S + +E + ++ + + D L+G+ N F + L Sbjct: 113 LMREREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYADRDGLTGIANRRFFETRLRD 170 Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 Y +S++ FD+D+FK+IND FGH VGD V+ ++ ++ V GR GG Sbjct: 171 EYTRWQRYGGDMSMLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAEVVRAQDTFGRFGG 230 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTI 236 EEFA + +A +A +R I ++ + + G S+ +T S G A R + Sbjct: 231 EEFALLLPCTPLDDAMRVAEKIRCTIADTPVEV-QGTSVPVTASVGGACARVGVPSYDVL 289 Query: 237 IYRADQALYVAKKSGRNRVVCF 258 I AD ALY AK+ GRNR V F Sbjct: 290 INEADAALYSAKRQGRNRSVAF 311 >gi|332094532|gb|EGI99578.1| diguanylate cyclase domain protein [Shigella boydii 5216-82] Length = 371 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 23/201 (11%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIVDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII--YR 239 G E+AI A LR E + + + + P + + IS G+A P++ + YR Sbjct: 295 VIMSGMP-AESAITAM-LRVHEELNTLRLPNTPQVTLRISVGVA------PLNPQMSHYR 346 Query: 240 -----ADQALYVAKKSGRNRV 255 AD ALY AKK+GRNR Sbjct: 347 EWLKSADLALYKAKKAGRNRT 367 >gi|288958189|ref|YP_003448530.1| hypothetical protein AZL_013480 [Azospirillum sp. B510] gi|288910497|dbj|BAI71986.1| hypothetical protein AZL_013480 [Azospirillum sp. B510] Length = 516 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 104/212 (49%), Gaps = 17/212 (8%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115 +PF+ L V + +++ ++ + Y ++E + ++ D L+G+ N Sbjct: 311 SPFWTL--FTVNQAVIQGVAVNLAWIYDYTERRSMEEA------LRDMASRDPLTGIYNR 362 Query: 116 SAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 +F+ S ++E LS+ D+D+FK+IND FGH GD + ++ + Sbjct: 363 RSFMEMARSQLARAHRFHEPLSVFVLDVDHFKRINDTFGHATGDDALRMVAAGCQAILRE 422 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-R 227 +GRLGGEEF G++ E+ ++A +R+ + I G + +T+S GIA Sbjct: 423 YDILGRLGGEEFVVVLPGATADESRVVAERVRRHLARMPIEAPDG-TFRLTVSIGIAGLE 481 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + I+RAD ALY AK GRNRV F Sbjct: 482 GATDTLERAIHRADLALYRAKHLGRNRVTVFE 513 >gi|187920506|ref|YP_001889538.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans PsJN] gi|187718944|gb|ACD20167.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans PsJN] Length = 777 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 14/222 (6%) Query: 40 ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99 +V+F A F G + +E ++ + +V I + S++ + + F+ ++ Sbjct: 137 GSVLFYATAFALLFGQPLTHDVETVVW--MWIVAIGVPTSVVFHFGFYRFRRNHFLLESQ 194 Query: 100 ISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++QL+ D L+GL N AF+ + + + S +F DID FK +ND FGH +GD Sbjct: 195 LAQLAATDPLTGLQNRRAFVKQAERRLDTVTPDTRTSAIFLDIDNFKSLNDRFGHAIGDH 254 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L+ V R+GGEEF A LG A +A LR I + Sbjct: 255 ALYQVAQVLMEEISADDSVSRIGGEEF-ALLLGDGLTGALHVAERLRHAIAAIE-----R 308 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P +T S G+AE E I ++ RAD+AL AK SGRNRV Sbjct: 309 PDGRLTASFGVAEHRSGESIMVLLDRADEALLRAKHSGRNRV 350 >gi|190574856|ref|YP_001972701.1| putative transmembrane GGDEF domain regulatory protein [Stenotrophomonas maltophilia K279a] gi|190012778|emb|CAQ46407.1| putative transmembrane GGDEF domain regulatory protein [Stenotrophomonas maltophilia K279a] Length = 481 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 17/189 (8%) Query: 78 ISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I LLGY S+L ++ I R + L+R D L+GL N +F SL + + Sbjct: 280 IGSLLGYALRSVLSQIEIQRQRDELETLARRDPLTGLGNRRSFDESLDRAHRRARRQDQG 339 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALG 186 L+++ DID+FK++ND +GHP GD+ + ++ L + G + R GGEEF AA Sbjct: 340 LAVLMIDIDHFKRLNDTYGHPEGDRRLRAVAGILDGCLQRGDDLLA-RYGGEEFIAALPS 398 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQAL 244 A L LR +E + + P +TIS G+A + E ++ RADQAL Sbjct: 399 PDATHALGLGERLRASVEAAAL---PAPVATVTISIGVAWQAPGEDGDPRGLVERADQAL 455 Query: 245 YVAKKSGRN 253 Y AK +GRN Sbjct: 456 YRAKHAGRN 464 >gi|146311325|ref|YP_001176399.1| hypothetical protein Ent638_1669 [Enterobacter sp. 638] gi|145318201|gb|ABP60348.1| diguanylate cyclase [Enterobacter sp. 638] Length = 298 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 8/153 (5%) Query: 107 DCLSGLLNHSAFISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL S S N E L ++ D+D+FK+INDN+GH +GD V+ L+ Sbjct: 132 DALTGLPLRRILDESYDSMNKALGDEGLYLLLLDVDHFKKINDNYGHLIGDAVLRSLALN 191 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L V R GGEEF S++EA A LR++IE S+ +S G + IT S Sbjct: 192 LENNIRRAESVYRYGGEEFIILLQAHSDREATEAAERLRRVIETSET-VSGGHRVKITFS 250 Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 +G+ R H+ E + ++ RAD ALY K+SGRN Sbjct: 251 SGLT-RVHRGETLREVLERADVALYKGKQSGRN 282 >gi|212633335|ref|YP_002309860.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212554819|gb|ACJ27273.1| GGDEF domain protein [Shewanella piezotolerans WP3] Length = 624 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 104/180 (57%), Gaps = 11/180 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQI 142 L+EL + ++++ + ID L+G+ N ++F I + G + + ++I+ DID+FK I Sbjct: 442 LRELNEANQKLTEQTTIDSLTGVKNRNSFDKRIVAEGRISRRQQTPMAILMLDIDHFKSI 501 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD+ + ++ +L P V R GGEEFA ++++ A +A +RK Sbjct: 502 NDTYGHLAGDQALRVIAVELKQKLKRPTDLVSRFGGEEFAIILPNTNQEGALQVAESIRK 561 Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFS 259 I I+ G +I +T+S G++ E E +T++ RAD+ALY AK GRNRV+ ++ Sbjct: 562 AIFELPISW-GGVTIPLTVSIGVSVEIVSSEQHTTLLLERADKALYRAKNEGRNRVMLYT 620 >gi|320327441|gb|EFW83454.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 20/220 (9%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L P L + + + + + + + +G++S + +L+ N + ++SR D L+GLLN Sbjct: 82 LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 141 Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 H A+ L + +++ I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 142 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 201 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222 +GR GG+EF + +A R+I+E +++ I S + +++S Sbjct: 202 DSDLIGRCGGDEFCVILPDTHLFQA-------REILERTRLAIDEMTYSLQRDLKVSLSI 254 Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261 GIA + P S+ ++ AD+ALY+AK +GRN V D+ Sbjct: 255 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDM 294 >gi|209519429|ref|ZP_03268226.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. H160] gi|209500168|gb|EEA00227.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. H160] Length = 316 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 11/202 (5%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 L+ +V + +TIS + ++S + +E + ++ + + D L+G+ N F + L Sbjct: 113 LMRGREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYANRDGLTGIANRRFFEARLRD 170 Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 Y +S++ FD+D+FK+IND FGH VGD V+ ++ ++ V GR GG Sbjct: 171 EFTRWQRYGGDMSMLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAGVVRAQDTFGRFGG 230 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTI 236 EEFA + +A ++A +R +IE + + + G S+ +T S G A R + Sbjct: 231 EEFALLLPCTPLDDAMLVAEKIRCVIEETPVEL-IGTSVPVTASLGGAAARDGVPAYDVL 289 Query: 237 IYRADQALYVAKKSGRNRVVCF 258 I AD ALY AK+ GRN V F Sbjct: 290 INEADAALYRAKRQGRNCAVAF 311 >gi|330982934|gb|EGH81037.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 267 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N + I ++ + S++ DID+FK +ND +GHP Sbjct: 104 QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 163 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI ++ L R GGEEF SS ++AA LA +RK +E+ I Sbjct: 164 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRKSVESLVIPE 223 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +TIS G+AE E +++I RAD+ALY AK+ GRNRV C Sbjct: 224 TGS----VTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRVEC 266 >gi|170077470|ref|YP_001734108.1| PleD protein [Synechococcus sp. PCC 7002] gi|169885139|gb|ACA98852.1| PleD protein [Synechococcus sp. PCC 7002] Length = 516 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 97/178 (54%), Gaps = 14/178 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-----YNEK--LSIVFFDIDYFKQINDNFGHPV 150 + +L +D L+ + N F L + Y E+ L+++ FD+DYFK+ ND++GH Sbjct: 335 QELQKLVHLDGLTQIANRRCFNQRLTAEWHRLYREQKPLALILFDVDYFKRYNDSYGHQQ 394 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208 GD+ + ++ + + P V R GGEEF ++++ A I+A +R+ + QI Sbjct: 395 GDECLIQIAQAVKHLLKRPADLVARYGGEEFVVVLPNTTQEGATIVAKRIRRTVLELQIA 454 Query: 209 -NISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 N + +T+S G+ + ++P+ T + +ADQALY+AK+ GRNR+V + E Sbjct: 455 HNATEINEAIVTVSLGVVSGIPQSQEKPL-TFVKKADQALYLAKQQGRNRIVVAGESE 511 >gi|197262416|ref|ZP_03162490.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197240671|gb|EDY23291.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 570 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 L+L+ + T LL+ + + ++K +F+ N + + D L+ L N A Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421 Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY AK+SGRNR +C SD Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562 >gi|296158639|ref|ZP_06841469.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. Ch1-1] gi|295891207|gb|EFG70995.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. Ch1-1] Length = 312 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 11/202 (5%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 L+ +V + +TIS + ++S + +E + ++ + + D L+G+ N F + L Sbjct: 113 LMREREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYADRDGLTGIANRRFFETRLRD 170 Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 Y +S++ FD+D+FK+IND FGH VGD V+ ++ ++ V GR GG Sbjct: 171 EYTRWQRYGGDMSMLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAEVVRAQDTFGRFGG 230 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTI 236 EEFA + +A +A +R I ++ + + G S+ +T S G A R + Sbjct: 231 EEFALLLPCTPLDDAMRVAEKIRCTIADTPVEV-QGTSVPVTASVGGACARVGVPSYDVL 289 Query: 237 IYRADQALYVAKKSGRNRVVCF 258 I AD ALY AK+ GRNR V F Sbjct: 290 INEADAALYSAKRQGRNRSVAF 311 >gi|170690121|ref|ZP_02881288.1| diguanylate cyclase [Burkholderia graminis C4D1M] gi|170144556|gb|EDT12717.1| diguanylate cyclase [Burkholderia graminis C4D1M] Length = 392 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 7/167 (4%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 ++ R+ Q S+ D L+ L N F + GS N LS++ D+D+FK++ND +GH Sbjct: 213 THGRLLQESQTDFLTRLGNRRWFFEEGERVLGEGSKNRPLSLLALDLDHFKKLNDRYGHH 272 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ ++ V G + R+GGEEFAA G E A + + + + + Sbjct: 273 AGDEVLRSFAEVARRVVGHEAVLARIGGEEFAALLPGHDEARAKAVGEAIVECFAQTVSH 332 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 +G + T+S G+A H +P++ ++ AD ALY AK G NRV Sbjct: 333 RVNGAEVRATVSIGLAHSTHAGQPLAELLSAADGALYRAKSLGGNRV 379 >gi|209918648|ref|YP_002292732.1| hypothetical protein ECSE_1457 [Escherichia coli SE11] gi|209911907|dbj|BAG76981.1| conserved hypothetical protein [Escherichia coli SE11] Length = 443 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 100/183 (54%), Gaps = 8/183 (4%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQ 141 YI +++ +F N + ++ D L+ N FI SL S + S++ DID FK Sbjct: 263 YIISTLMYYIFRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDSFKS 322 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GH +GD+VI ++ + +GRLGGEEF G++++ +A +RK Sbjct: 323 INDKWGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRK 382 Query: 202 IIEN--SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IE S+ +S GP IT+S G ++ + P S ++ AD+ALY AK++G+N+V+ Sbjct: 383 NIEEQCSEKLLSHGPE-KITVSIGCFTSKENNLSP-SEMLVNADKALYQAKRTGKNKVII 440 Query: 258 FSD 260 S Sbjct: 441 HSK 443 >gi|332534870|ref|ZP_08410692.1| GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332035669|gb|EGI72158.1| GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 324 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 90/180 (50%), Gaps = 25/180 (13%) Query: 104 SRIDCLSGLLNHSAFISSL---------------GSYNEKLSIVFFDIDYFKQINDNFGH 148 SR+D L+ LLN F + + + + DID FK INDN+GH Sbjct: 141 SRLDPLTELLNRQTFDKKVIEIVSGNGFLLPRNDNNKKRRWYLAIADIDNFKNINDNYGH 200 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD+VI ++ L F +V R GGEEFA +E +A + N LR + Sbjct: 201 VIGDEVILLVARLLKNNFRIEDYVFRYGGEEFAMLFQAKTEADAHVALNRLR-------L 253 Query: 209 NISSGPSIHI---TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 N++ P I TIS G E + +S+I+ +AD ALY +K +GRNRV +S++E N Sbjct: 254 NVAQYPFPQIGQLTISIGFLELVSIDTVSSIVNQADLALYYSKNTGRNRVTSYSELEVNN 313 >gi|115380209|ref|ZP_01467234.1| gaf domain/ggdef domain protein [Stigmatella aurantiaca DW4/3-1] gi|115362792|gb|EAU62002.1| gaf domain/ggdef domain protein [Stigmatella aurantiaca DW4/3-1] Length = 668 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 9/176 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + ++ +++ D L+GLLNH F ++ Y KLS++ DID+FK +ND +GHP Sbjct: 485 FEQMERMATTDGLTGLLNHRTFQSKADEHLAQARRYQRKLSLILTDIDHFKSVNDTYGHP 544 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ L V R GGEEFA + + A ++A +R+ ++ Sbjct: 545 TGDAVLKGVAKILRDKARDTDIVARYGGEEFAIIMPETDAKGALVIAERIREAVKAEVFQ 604 Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 GP + +T+S GI+ H +I +DQ LY AK++GRN+ V + ++ Sbjct: 605 TEMGP-LKVTLSLGISTGPDHGYDKQHLIDLSDQCLYHAKRNGRNQSVTVAQMQGG 659 >gi|84387873|ref|ZP_00990887.1| hypothetical protein V12B01_15306 [Vibrio splendidus 12B01] gi|84377219|gb|EAP94088.1| hypothetical protein V12B01_15306 [Vibrio splendidus 12B01] Length = 487 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 22/215 (10%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYN--RISQLSRIDCLSGLLNHSAF 118 LE L N SL+ IS+ ++L++ +S I+ L++ + +I ++ +D L+GL + +F Sbjct: 276 LEQELNRNHSLLFISL-MALVVSLLSIIIVLVLYLRHRHLKILDVASLDYLTGLPSRRSF 334 Query: 119 ISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 I L + S ++ DID+FK++ND +GH GD+VI ++ L Sbjct: 335 IEQLKLKIAQRSPYPLTNVGVILLDIDHFKRVNDQYGHAQGDRVICEVAKSLKRFVNRRR 394 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 + R GGEEF E+E L+ +LR+ +E Q +S +TISAG CH Sbjct: 395 LIARYGGEEFILVTFDCDERELFELSEELRRSVEQLQGLVSP-----VTISAGC---CHD 446 Query: 231 EP---ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 I T I +AD+ALY AK+ GRN + E Sbjct: 447 RALTDIETAIDKADKALYQAKERGRNNTQTYQKNE 481 >gi|300867659|ref|ZP_07112306.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] gi|300334370|emb|CBN57478.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] Length = 358 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 10/171 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 +L++ + ++S D L+ + N A + E++ I+ DID FKQINDN+G Sbjct: 192 KLYLERFHLMEISEKDALTSVFNRGAGERILQDLINQSEEQIGIILCDIDRFKQINDNYG 251 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD+V+ ++ + R GGEEF G E+E +A LR I + Q Sbjct: 252 HLMGDRVLQVIAQSCQNRLREKDILIRWGGEEFLIVVTGDDEKELKQMAEHLRLAIADRQ 311 Query: 208 INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I P + +T S G+A R E I + RAD+ALY AK GRN+V+ Sbjct: 312 I-----PEVGKVTASFGVALRQPDEDIVELFARADRALYRAKGYGRNQVIA 357 >gi|62180561|ref|YP_216978.1| hypothetical protein SC1991 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583515|ref|YP_002637313.1| hypothetical protein SPC_1728 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75482657|sp|Q57N14|YEDQ_SALCH RecName: Full=Cellulose synthesis regulatory protein gi|62128194|gb|AAX65897.1| putative inner membrane protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468042|gb|ACN45872.1| hypothetical protein SPC_1728 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715037|gb|EFZ06608.1| Cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 570 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 L+L+ + T LL+ + + ++K +F+ N + + D L+ L N A Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421 Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY AK+SGRNR +C SD Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562 >gi|42528082|ref|NP_973180.1| GGDEF domain-containing protein [Treponema denticola ATCC 35405] gi|41819127|gb|AAS13099.1| GGDEF domain protein [Treponema denticola ATCC 35405] Length = 1431 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 4/136 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N SI+ +D+D FK++ND FGH +GD V+ + + V +GR+GGEEF Sbjct: 1126 NSSFSILMYDLDKFKKVNDTFGHQMGDTVLKATAKTALGVLKKGQILGRVGGEEFVILLP 1185 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQAL 244 + +++A I+A +RK +E + P+I ITIS GIA H ++ + DQAL Sbjct: 1186 NTEKKQALIIAEKIRKQVEALHFD---NPAIRITISMGIAVFPTHGTAEKDLLSKVDQAL 1242 Query: 245 YVAKKSGRNRVVCFSD 260 Y AK GRN+ V + + Sbjct: 1243 YAAKNWGRNQTVVWEE 1258 >gi|251788911|ref|YP_003003632.1| diguanylate cyclase [Dickeya zeae Ech1591] gi|247537532|gb|ACT06153.1| diguanylate cyclase [Dickeya zeae Ech1591] Length = 491 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 15/192 (7%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124 + +S+ + LL+ G+ + R+ ++ D L+GL+N AF + Sbjct: 305 ITVSVAMLLLIWLTIGAYQR-------RLELMATTDKLTGLMNRQAFEYVFRTLRIKQST 357 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + SI+ D+DYFK+IND +GH VGD+V+ + + R GGEEF Sbjct: 358 QHRTFSIILIDLDYFKKINDQYGHHVGDRVLVRTARLIQRTIRKTDSACRWGGEEFVLLL 417 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 S +A +A +R+ I + ++ I++TIS GIAE E I ++ RAD AL Sbjct: 418 ADCSRSQAHFIAEKIRRAIRFALVS-HQHQVINLTISCGIAESHPGESIDHLVQRADNAL 476 Query: 245 YVAKKSGRNRVV 256 Y AK+ GR++ V Sbjct: 477 YQAKRQGRDQAV 488 >gi|167625701|ref|YP_001675995.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167355723|gb|ABZ78336.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 327 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 23/222 (10%) Query: 57 PFYGLEYILVENLSLVIIS------ITISLLLGYISGSILKELFI--SYNRISQLSRIDC 108 P G + +N++L+ +S IS+++ ++ + +L + + R+ LS+ID Sbjct: 110 PITGRADFMYQNVTLLPLSSLTGEVTHISMIVYDVTDVAINKLQLKSANERLEYLSQIDG 169 Query: 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 LS L N + L Y + S+V DID+FK IND +GH GD+VI +S Sbjct: 170 LSQLFNRRHWEQCLQKEFDRHTRYGSETSLVMLDIDHFKAINDTYGHQAGDRVIQNVSHT 229 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + GR GGEEF + A A LRK IE +I + I +TIS Sbjct: 230 IKKSLRETDCAGRYGGEEFGVVLANTPAVNARFFAERLRKKIEKLEI-LYEEQLIKVTIS 288 Query: 222 AGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVCFS 259 GI C +P T + +ADQALY AK++GRN + + Sbjct: 289 IGI---CDIKPEVNDSDTWLSQADQALYQAKEAGRNCTIAYE 327 >gi|291060338|gb|ADD73073.1| ggdef domain-containing protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 347 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 24/214 (11%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS-RIDCLSGLLN 114 TP+ + I+++ L I+I +LLL + ++ ++ + + + L+ ++D LS Sbjct: 151 TPYD--QSIIMDIAQLAAIAINNALLLEQATTDMMTQMKLKHYFFAMLTAKLDTLST--- 205 Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 E +S++ DID+FKQIND GH GD V+ +++ + R Sbjct: 206 -----------QETVSVLMLDIDFFKQINDTHGHLCGDLVLQHVAEIIRSCTRPCDIASR 254 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERC-HKEP 232 GGEEF +S +EAA +A +R + Q+ I SI +T+SAG+AE ++E Sbjct: 255 YGGEEFMLMLSNNSSREAAHVAERIR--VATEQLTIPYHEVSIRVTVSAGVAEYLPNQES 312 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 T+I RAD ALY AK++GRN+VV E N C Sbjct: 313 AETLIKRADSALYQAKQNGRNKVVIS---EKNMC 343 >gi|270263695|ref|ZP_06191964.1| diguanylate cyclase [Serratia odorifera 4Rx13] gi|270042579|gb|EFA15674.1| diguanylate cyclase [Serratia odorifera 4Rx13] Length = 354 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 14/185 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVF 133 LLG ++ K L + ++S D L+GL N + S Y +++ Sbjct: 167 LLGLVTYRTAKRLAQKKQELLRISMRDGLTGLYNRRHWEHLLHHQFDSCRRYQHTATLIL 226 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D FK IND FGH +GD+ +A L+++L++ VGR GG+EF A +S ++A+ Sbjct: 227 MDVDRFKTINDTFGHALGDEALAVLAEELLIGLRAVDIVGRYGGDEFGAVLPNTSAEQAS 286 Query: 194 ILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKS 250 I L++I E + I P + + ISAGIA+ H + + + AD ALY AK + Sbjct: 287 I---ALQRIQERLNDIIFREAPQLRLNISAGIAD-YHGDMGGYLDWLKAADNALYRAKNN 342 Query: 251 GRNRV 255 GRNR+ Sbjct: 343 GRNRL 347 >gi|296134962|ref|YP_003642204.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12] gi|295795084|gb|ADG29874.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12] Length = 752 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 89/176 (50%), Gaps = 17/176 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 + + L+ D L+G+ N F++ ++ DID FKQIND FGH V Sbjct: 573 SELRNLAYTDTLTGIPNRRYFLARAALELRRAQREGSPFVVLALDIDRFKQINDRFGHQV 632 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI + + P GRLGG+EFA ++ Q A +A LR I+ + Sbjct: 633 GDAVIRCFAQTCMQQLRGPDLCGRLGGDEFAILLPQTTRQVAFDVAQRLRLSIQEASCLP 692 Query: 211 SSGPS-IHITISAGIAERCHKEPIST------IIYRADQALYVAKKSGRNRVVCFS 259 SS P + +T S GIAE P ST ++ RADQALY AK++GRNRV ++ Sbjct: 693 SSAPDGLTLTTSIGIAEFL---PTSTLMDADELLDRADQALYRAKQAGRNRVEIWT 745 >gi|94263138|ref|ZP_01286956.1| GGDEF [delta proteobacterium MLMS-1] gi|93456509|gb|EAT06623.1| GGDEF [delta proteobacterium MLMS-1] Length = 525 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 127/260 (48%), Gaps = 17/260 (6%) Query: 13 LCHEKNLESFSP--HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70 L H++ + P H+F + + ++ I ++ +G Y + LV Sbjct: 262 LRHDRRFQQQLPDEHSFTWKVMVGNQPWAVNLLRIHDVEQRPVGYLISYAPDNFLVALRK 321 Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128 I+S+ ++ LL G + L S + + +L+ D L+GL N +F+ LG E+ Sbjct: 322 EFIVSLLVAWLLAAGLGLLFVLLARSRDEMVRLATTDPLTGLANRRSFMDRLGLEQERFK 381 Query: 129 -----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + ++ DID+FK++ND GH VGD+V+ + + VGRLGGEEFA Sbjct: 382 RFGNPVGLLMLDIDFFKKVNDTHGHHVGDEVLGQFATLMRQNLRHVDLVGRLGGEEFAVV 441 Query: 184 ALGSSEQEAAILANDLR-KIIENSQINI------SSGPSIHITISAGIAE-RCHKEPIST 235 G+ + AN LR + E Q + +S ++IT+S G+A + + + Sbjct: 442 LPGADLEGTLHFANRLRCGVGERLQGEVCGHRFSTSAGILNITVSIGVAVLQPGDDGVEP 501 Query: 236 IIYRADQALYVAKKSGRNRV 255 ++ RAD ALY AK++GRNR+ Sbjct: 502 VLRRADTALYRAKENGRNRI 521 >gi|300864101|ref|ZP_07109000.1| Response regulator receiver modulated diguanylate cyclase [Oscillatoria sp. PCC 6506] gi|300337917|emb|CBN54146.1| Response regulator receiver modulated diguanylate cyclase [Oscillatoria sp. PCC 6506] Length = 315 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 12/196 (6%) Query: 72 VIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNH-------SAFISS 121 +++ + L L Y+ + L+E + L+ D L+G+ N A I Sbjct: 118 LLVRVRTHLELKYMREQLKKSLQEQAQLTKELQNLANTDPLTGVWNRRYLLTLCEAEIER 177 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 YN S++ D+D FKQIND +GH VGD+V+ ++ + F GR GGEEF Sbjct: 178 ACRYNHLFSVLMLDLDRFKQINDIYGHSVGDEVLIGMTKIVKNSLRKVDFWGRFGGEEFV 237 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240 ++ A +A +R +E ++ I + IT+S G++ + + I ++ RA Sbjct: 238 VILPETNLDSAVDVAERIRATLEKTEFPIQEK-QVKITVSIGVSTYQLEDQKIDLVLQRA 296 Query: 241 DQALYVAKKSGRNRVV 256 D+ALY AK GRNRVV Sbjct: 297 DKALYQAKNQGRNRVV 312 >gi|217963666|ref|YP_002349344.1| ggdef domain protein [Listeria monocytogenes HCC23] gi|217332936|gb|ACK38730.1| ggdef domain protein [Listeria monocytogenes HCC23] gi|307571759|emb|CAR84938.1| GGDEF domain protein [Listeria monocytogenes L99] Length = 357 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 17/197 (8%) Query: 76 ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128 + I+L++G +S ++ K+LF Y + S L + LS + I+ + S + + Sbjct: 164 VLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDSGSRQ 223 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184 ++++ DIDYFK IND +GH GD ++ QL V+ G R GGEEF+ Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAVILKASTTDGSEAFRNGGEEFSIVL 279 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQA 243 L S +E +A +RK E I G + ITIS G++ S +++ AD+A Sbjct: 280 LDCSIEEGNKVAEQVRKETEEHDFVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEA 339 Query: 244 LYVAKKSGRNRVVCFSD 260 LY AK +GRNR VC +D Sbjct: 340 LYKAKLTGRNR-VCIAD 355 >gi|157155149|ref|YP_001461960.1| diguanylate cyclase [Escherichia coli E24377A] gi|157077179|gb|ABV16887.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E24377A] Length = 443 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 100/183 (54%), Gaps = 8/183 (4%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQ 141 YI +++ +F N + ++ D L+ N FI SL S + S++ DID FK Sbjct: 263 YIISTLMYYVFRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDSFKS 322 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GH +GD+VI ++ + +GRLGGEEF G++++ +A +RK Sbjct: 323 INDKWGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRK 382 Query: 202 IIEN--SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IE S+ +S GP IT+S G ++ + P S ++ AD+ALY AK++G+N+V+ Sbjct: 383 NIEEQCSEKLLSHGPE-KITVSIGCFTSKENNLSP-SEMLVNADKALYQAKRTGKNKVII 440 Query: 258 FSD 260 S Sbjct: 441 HSK 443 >gi|256823241|ref|YP_003147204.1| diguanylate cyclase [Kangiella koreensis DSM 16069] gi|256796780|gb|ACV27436.1| diguanylate cyclase [Kangiella koreensis DSM 16069] Length = 469 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 9/180 (5%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDY 138 S L EL ++ +L+ D L+ + N F+ S S N L ++ D D+ Sbjct: 282 SERALIELKAVNQKLEELAATDSLTRVANRREFMKRSEEEMSRSSRNSTDLCLMVIDFDH 341 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+IND +GH GDKV+ V +GR+GGEEFA ++ + A +A Sbjct: 342 FKEINDQYGHQAGDKVLKDFVKLAKEVMRPSDLLGRIGGEEFALLLPETNIRSAVKVAER 401 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 LR+ IE I I S I +TIS G+AE K + + ++RAD+ LY AK GRNRVV Sbjct: 402 LRQHIEEESIVIGS-KRIKLTISIGVAEYQPKVDTVKKWLHRADEFLYQAKDKGRNRVVV 460 >gi|172057206|ref|YP_001813666.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15] gi|171989727|gb|ACB60649.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15] Length = 373 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q +R D L+GL N AF L ++ +++++ DID+FKQIND +GH GD Sbjct: 194 LQQTARRDFLTGLHNFRAFTDHLEDLKQQTILHSREVALITVDIDHFKQINDTYGHEAGD 253 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + +L +V R GGEEF+ + + LA LR+ I + +SS Sbjct: 254 EVLRQFAKRLQDGVTDSGYVSRNGGEEFSILVERLTVVKVLALAEQLREQIAAAPFVLSS 313 Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 G +H+T S G+A I I+ AD ALY +K++GRNRV FS Sbjct: 314 GMLLHLTASFGVASFPETTGQIQHIVTDADAALYQSKQNGRNRVTLFS 361 >gi|290893121|ref|ZP_06556109.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071] gi|290557283|gb|EFD90809.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071] Length = 357 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 17/197 (8%) Query: 76 ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128 + I+L++G +S ++ K+LF Y + S L + LS + I+ + S + + Sbjct: 164 VLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDSGSRQ 223 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184 ++++ DIDYFK IND +GH GD ++ QL V+ G R GGEEF+ Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAVILKASTTDGSEAFRNGGEEFSIVL 279 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQA 243 L S +E +A +RK E I G + ITIS G++ S +++ AD+A Sbjct: 280 LDCSIEEGNKVAEQVRKETEEHDFVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEA 339 Query: 244 LYVAKKSGRNRVVCFSD 260 LY AK +GRNR VC +D Sbjct: 340 LYKAKLTGRNR-VCIAD 355 >gi|239908553|ref|YP_002955295.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239798420|dbj|BAH77409.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 430 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 13/159 (8%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N + +L + LS++ FDID+FK +ND +GHP GD V+A L+ Sbjct: 276 DALTGIANRAGLAEALEREFHRSQRHPASLSVIIFDIDHFKNVNDAYGHPAGDAVLAELT 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HI 218 + GR GGEEF A G+ EAA LA LR S + P++ + Sbjct: 336 RLVTTHVRDHDTFGRYGGEEFLIIAPGTDVAEAAKLAERLR-----SDVARHGFPAVGSL 390 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T S G+A + +++ RAD ALY AK+SGR+RVV Sbjct: 391 TCSFGVAVAGPDDTPDSLVARADTALYDAKQSGRDRVVA 429 >gi|322616979|gb|EFY13887.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618218|gb|EFY15110.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625889|gb|EFY22708.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626341|gb|EFY23151.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632756|gb|EFY29501.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639098|gb|EFY35791.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640414|gb|EFY37070.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647225|gb|EFY43724.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655535|gb|EFY51843.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660313|gb|EFY56551.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662994|gb|EFY59201.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668179|gb|EFY64338.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674062|gb|EFY70156.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675586|gb|EFY71660.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683003|gb|EFY79019.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686697|gb|EFY82675.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195415|gb|EFZ80595.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198057|gb|EFZ83174.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204471|gb|EFZ89477.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207561|gb|EFZ92509.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211000|gb|EFZ95860.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217546|gb|EGA02265.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323226692|gb|EGA10889.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231568|gb|EGA15681.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236011|gb|EGA20090.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240581|gb|EGA24624.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245473|gb|EGA29473.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247591|gb|EGA31542.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253946|gb|EGA37770.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257769|gb|EGA41449.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262124|gb|EGA45687.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266247|gb|EGA49737.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270724|gb|EGA54163.1| putative diguanylate cyclase YedQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 570 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 L+L+ + T LL+ + + ++K +F+ N + + D L+ L N A Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421 Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + Sbjct: 482 CIVLPGATKTQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY AK+SGRNR +C SD Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562 >gi|238795416|ref|ZP_04638931.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969] gi|238720535|gb|EEQ12336.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969] Length = 313 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 14/185 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132 LLG ++ K L + + ++S D L+GL N H+ F S Y +++ Sbjct: 129 LLGLVTYRTAKRLAENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 187 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191 DID FK IND FGH VGD I L+++L++ VGR GG+EF A ++ EQ Sbjct: 188 LLDIDNFKSINDTFGHAVGDDAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 247 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250 +L K+ + + + PS+ + +SAGIA+ H + AD ALY+AK + Sbjct: 248 REVLTRIQEKL---ADLVFAQAPSLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDN 304 Query: 251 GRNRV 255 GRNR+ Sbjct: 305 GRNRI 309 >gi|156976668|ref|YP_001447574.1| hypothetical protein VIBHAR_05442 [Vibrio harveyi ATCC BAA-1116] gi|156528262|gb|ABU73347.1| hypothetical protein VIBHAR_05442 [Vibrio harveyi ATCC BAA-1116] Length = 539 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 104/200 (52%), Gaps = 16/200 (8%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125 E+ L+ + + +S++L Y+ F RI L+ D L+GL+N +AF S Sbjct: 339 EHEWLMQVGVVLSIVLAYLIARFQLRAFSDNQRIYYLAHHDSLTGLVNRAAFQSQASETL 398 Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ +++ D+D FK IND +GH GDK + ++ + VFG+ + RLGG+E Sbjct: 399 SQCLKAGREVCLIYLDLDNFKFINDEYGHAAGDKTLQHVASVMQRVFGSKALLARLGGDE 458 Query: 180 FAAAALGSSE--QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-- 235 F A L S E Q+ A+ L ++I++ I P + ++ I KE T Sbjct: 459 F-AILLSSQEHMQDPEHFASSLIQLIQDP---IEVRPDVFHQVTTSIGGCYAKETTCTLD 514 Query: 236 -IIYRADQALYVAKKSGRNR 254 ++++AD A+Y AK+SG+NR Sbjct: 515 ELMHQADMAMYEAKRSGKNR 534 >gi|330982979|gb|EGH81082.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 232 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N + I ++ + S++ DID+FK +ND +GHP Sbjct: 69 QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 128 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI ++ L R GGEEF SS ++AA LA +RK +E+ I Sbjct: 129 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRKSVESLVIPE 188 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +TIS G+AE E +++I RAD+ALY AK+ GRNRV C Sbjct: 189 TGS----VTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRVEC 231 >gi|326316655|ref|YP_004234327.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373491|gb|ADX45760.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 535 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L ++ R+ ++ D L+G+ N A+ ++ Y +S+V FD+D+FK+ ND Sbjct: 341 LVEAHARMEHMAEHDGLTGVHNRRAYDRRIREVMAQCRRYQRPVSVVMFDVDFFKRYNDA 400 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GHP GD+ + +++ L P F+ R GGEEFA + A +A R + Sbjct: 401 LGHPEGDECLRRVANALAGSIRRPGDFIARYGGEEFAIVLPETDAPGALQVAQAARSAVI 460 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 ++ P H+T+S G+A +EP + ++ RAD ALY AK+ GR+R+V Sbjct: 461 ALRLPHPGSPFGHVTVSGGVACSPGQEPETPEELLGRADTALYEAKQQGRDRIV 514 >gi|297566847|ref|YP_003685819.1| diguanylate cyclase [Meiothermus silvanus DSM 9946] gi|296851296|gb|ADH64311.1| diguanylate cyclase [Meiothermus silvanus DSM 9946] Length = 343 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 16/176 (9%) Query: 91 KELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 +EL N R+ L+ D L+GL N ++ L Y++ LS++ D+D FK+ Sbjct: 170 QELLEEANARLKVLADHDELTGLYNRRVLMARLKEEFHRALRYDQPLSLLMIDVDGFKEY 229 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD+V+ ++ ++ ++ R GGEEFA ++ A LA LR+ Sbjct: 230 NDTYGHSAGDEVLQQVAYRIKMMLRAGDLPARYGGEEFAVVLPNTTLTGAVALAERLRQA 289 Query: 203 IENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256 IE + P +TIS G+A + +EP T+I AD+ALY AK++GRNRVV Sbjct: 290 IER-----APWPLRPLTISVGVAAQTAAAEEP-HTLIATADEALYEAKRAGRNRVV 339 >gi|167552781|ref|ZP_02346532.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322608|gb|EDZ10447.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 570 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 L+L+ + T LL+ + + ++K +F+ N + + D L+ L N A Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421 Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY AK+SGRNR +C SD Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562 >gi|149909932|ref|ZP_01898581.1| sensory box/GGDEF family protein [Moritella sp. PE36] gi|149806946|gb|EDM66905.1| sensory box/GGDEF family protein [Moritella sp. PE36] Length = 320 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 114/220 (51%), Gaps = 19/220 (8%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI---------SQLSRID 107 P G+ + +N++++ ++ +++ + ++S I I+ NR+ ++LS+ D Sbjct: 100 PVTGISEFMYQNMTIIPLA-SLTGEVTHVSLIIYDVTDIAINRLQLDKANAELARLSQTD 158 Query: 108 CLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+ L N + + + S Y + + + DID+FK +ND +GH GDKVIA +S Sbjct: 159 ALTQLNNRHRWNNLIDSEFKRVKRYEQISTFMMLDIDHFKNVNDTYGHVAGDKVIAEVSR 218 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 + F R GG+EFA ++ A ILA+ LR+ IEN+ I +I +TI Sbjct: 219 VIRENVRETDFSARYGGDEFAICLTNTTAHNAIILADRLRQAIENTVI-TDDDNNIKVTI 277 Query: 221 SAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S G+AE + + + T AD ALY K++GRN+ F Sbjct: 278 SIGMAEFTENTDTVDTWTKNADCALYKGKENGRNQYSIFK 317 >gi|15800111|ref|NP_286123.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 EDL933] gi|15829689|ref|NP_308462.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. Sakai] gi|168749835|ref|ZP_02774857.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4113] gi|168756914|ref|ZP_02781921.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4401] gi|168768323|ref|ZP_02793330.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4486] gi|168776322|ref|ZP_02801329.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4196] gi|168783238|ref|ZP_02808245.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4076] gi|168786219|ref|ZP_02811226.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC869] gi|195938555|ref|ZP_03083937.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. EC4024] gi|208807537|ref|ZP_03249874.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4206] gi|208815128|ref|ZP_03256307.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4045] gi|208823086|ref|ZP_03263404.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4042] gi|209396741|ref|YP_002269023.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4115] gi|217325787|ref|ZP_03441871.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. TW14588] gi|254791563|ref|YP_003076400.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. TW14359] gi|261223861|ref|ZP_05938142.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str. FRIK2000] gi|261256069|ref|ZP_05948602.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str. FRIK966] gi|291281288|ref|YP_003498106.1| MASE2 domain/diguanylate cyclase [Escherichia coli O55:H7 str. CB9615] gi|12513225|gb|AAG54731.1|AE005217_9 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13359892|dbj|BAB33858.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187768330|gb|EDU32174.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4196] gi|188015870|gb|EDU53992.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4113] gi|188999344|gb|EDU68330.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4076] gi|189355958|gb|EDU74377.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4401] gi|189362362|gb|EDU80781.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4486] gi|189373607|gb|EDU92023.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC869] gi|208727338|gb|EDZ76939.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4206] gi|208731776|gb|EDZ80464.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4045] gi|208737279|gb|EDZ84963.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4042] gi|209158141|gb|ACI35574.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4115] gi|209744364|gb|ACI70489.1| hypothetical protein ECs0435 [Escherichia coli] gi|209744366|gb|ACI70490.1| hypothetical protein ECs0435 [Escherichia coli] gi|209744368|gb|ACI70491.1| hypothetical protein ECs0435 [Escherichia coli] gi|209744370|gb|ACI70492.1| hypothetical protein ECs0435 [Escherichia coli] gi|209744372|gb|ACI70493.1| hypothetical protein ECs0435 [Escherichia coli] gi|217322008|gb|EEC30432.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. TW14588] gi|254590963|gb|ACT70324.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str. TW14359] gi|290761161|gb|ADD55122.1| MASE2 domain/diguanylate cyclase [Escherichia coli O55:H7 str. CB9615] gi|320192794|gb|EFW67434.1| Protein YaiC [Escherichia coli O157:H7 str. EC1212] gi|320638373|gb|EFX08087.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. G5101] gi|320643753|gb|EFX12876.1| diguanylate cyclase AdrA [Escherichia coli O157:H- str. 493-89] gi|320649104|gb|EFX17682.1| diguanylate cyclase AdrA [Escherichia coli O157:H- str. H 2687] gi|320655997|gb|EFX23913.1| diguanylate cyclase AdrA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662554|gb|EFX29943.1| diguanylate cyclase AdrA [Escherichia coli O55:H7 str. USDA 5905] gi|320665124|gb|EFX32217.1| diguanylate cyclase AdrA [Escherichia coli O157:H7 str. LSU-61] gi|326341141|gb|EGD64933.1| Protein YaiC [Escherichia coli O157:H7 str. 1044] Length = 371 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P +++ IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVNLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|326797138|ref|YP_004314958.1| diguanylate cyclase with PAS/PAC and GAF sensors [Marinomonas mediterranea MMB-1] gi|326547902|gb|ADZ93122.1| diguanylate cyclase with PAS/PAC and GAF sensors [Marinomonas mediterranea MMB-1] Length = 607 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 91/181 (50%), Gaps = 8/181 (4%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGS---YNEKLSIVFFDIDYF 139 S+ E ++ ++ + + D L+GL+N F SL N LSI+ DID F Sbjct: 413 ASVAIENRLAQRKLEEQAFYDHLTGLVNRRRFFELAEVSLQESIEQNYPLSILMLDIDRF 472 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND FGH GD+V+ L+ + G VGR GGEEF S + AA LA L Sbjct: 473 KEINDRFGHETGDRVLQALARCASSLVGKNDVVGRFGGEEFTILLPQSDRKRAASLAKTL 532 Query: 200 RKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 R+ + + S+G + T S G + I ++ +AD ALY AK +GRN VV + Sbjct: 533 RQALSELRTPSSTGIDVQFTASFGVVCNDAKNRSIDDLLSKADHALYQAKGNGRNCVVSY 592 Query: 259 S 259 + Sbjct: 593 T 593 >gi|315619770|gb|EFV00289.1| diguanylate cyclase domain protein [Escherichia coli 3431] Length = 388 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 100/182 (54%), Gaps = 8/182 (4%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQ 141 YI +++ +F N + ++ D L+ N FI SL S + S++ DID FK Sbjct: 208 YIISTLMYYVFRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDSFKS 267 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GH +GD+VI ++ + +GRLGGEEF G++++ +A +RK Sbjct: 268 INDKWGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRK 327 Query: 202 IIEN--SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IE S+ +S GP IT+S G ++ + P S ++ AD+ALY AK++G+N+V+ Sbjct: 328 NIEEQCSEKLLSHGPE-KITVSIGCFTSKENNLSP-SEMLVNADKALYQAKRTGKNKVII 385 Query: 258 FS 259 S Sbjct: 386 HS 387 >gi|294338946|emb|CAZ87290.1| putative diguanylate cyclase [Thiomonas sp. 3As] Length = 752 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 89/176 (50%), Gaps = 17/176 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 + + L+ D L+G+ N F++ ++ DID FKQIND FGH V Sbjct: 573 SELRNLAYTDTLTGIPNRRYFLARAALELRRAQREGSPFVVLALDIDRFKQINDRFGHQV 632 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI + + P GRLGG+EFA ++ Q A +A LR I+ + Sbjct: 633 GDAVIRCFAQTCMQQLRGPDLCGRLGGDEFAILLPQTTRQVAFDVAQRLRLSIQEASCLP 692 Query: 211 SSGPS-IHITISAGIAERCHKEPIST------IIYRADQALYVAKKSGRNRVVCFS 259 SS P + +T S GIAE P ST ++ RADQALY AK++GRNRV ++ Sbjct: 693 SSAPDGLTLTTSIGIAEFL---PTSTLMDADELLDRADQALYRAKQAGRNRVEIWT 745 >gi|204931366|ref|ZP_03222065.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|157168653|gb|ABV25707.1| putative inner membrane protein [Salmonella enterica subsp. enterica serovar Weltevreden] gi|204319849|gb|EDZ05058.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 570 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 L+L+ + T LL+ + + ++K +F+ N + + D L+ L N A Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421 Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY AK+SGRNR +C SD Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562 >gi|259156610|gb|ACV96553.1| pas/pac/ggdef-domain containing protein [Vibrio fluvialis Ind1] Length = 423 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/182 (36%), Positives = 99/182 (54%), Gaps = 14/182 (7%) Query: 84 YIS-GSILKELFISYNRISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSIVFF 134 Y+S G + E + + + +D L+GL N + A+ +L S E +S++ Sbjct: 237 YVSVGKDVTERLREEQALRESATVDQLTGLFNRNHGKALLREAYSFTL-SREEPMSLILC 295 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FKQIND+FGHPVGD+++A +S L V R GGEEF ++ AA Sbjct: 296 DIDHFKQINDSFGHPVGDQILAQVSGLLRKSVRGNDRVIRWGGEEFLILLENCTDMVAAE 355 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 LA LR I + Q S G +T+S G+A KE + +I R D+ALY +K++GRN+ Sbjct: 356 LAERLRLRIASEQFQ-SVG---KVTVSLGVASLFQKESLEQLISRCDEALYKSKRNGRNQ 411 Query: 255 VV 256 + Sbjct: 412 LT 413 >gi|168244837|ref|ZP_02669769.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168462472|ref|ZP_02696403.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194449982|ref|YP_002046038.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197247894|ref|YP_002146037.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198245164|ref|YP_002215098.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390082|ref|ZP_03216693.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238912441|ref|ZP_04656278.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194408286|gb|ACF68505.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195634181|gb|EDX52533.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211597|gb|ACH48994.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197939680|gb|ACH77013.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602527|gb|EDZ01073.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205336370|gb|EDZ23134.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|326622846|gb|EGE29191.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 570 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 L+L+ + T LL+ + + ++K +F+ N + + D L+ L N A Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421 Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY AK+SGRNR +C SD Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562 >gi|303246879|ref|ZP_07333156.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio fructosovorans JJ] gi|302491896|gb|EFL51776.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio fructosovorans JJ] Length = 432 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 77/161 (47%), Gaps = 11/161 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 L+ +D L+ LN L Y LS+V DID+FK IND GH GD V Sbjct: 266 DLANLDPLTRALNRRKLADVLTDEAARADRYGAPLSVVLLDIDHFKAINDTHGHEAGDAV 325 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L+ +L + R GGEEF A G + A LA LR+ + + + Sbjct: 326 LVELAGRLRATLRQVDRLARFGGEEFVVVAPGVGLEATAELAERLRQAVADKDFAATG-- 383 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G+AER E + RAD+ALY AK SGRNRV Sbjct: 384 --RVTASFGVAERVPGEDPERALGRADKALYRAKNSGRNRV 422 >gi|224367366|ref|YP_002601529.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223690082|gb|ACN13365.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 339 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 10/177 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQI 142 S+ K+L +S + + D L+GLLN F S L + ++ DID+FK++ Sbjct: 163 ASLRKKLDVS----KKDAETDALTGLLNRRGFESRLHPLLKDPQSCFCLIMIDIDHFKRV 218 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH VGD ++ L++ L + R GGEEF + ++A +A D+RK Sbjct: 219 NDTYGHLVGDSILKALANLLKQQTKGKDCLARFGGEEFIILLPETRLEQAGAVAEDIRKK 278 Query: 203 I--ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + + + P ITIS G+ + E T+I+R D ALY AK++GRNRVV Sbjct: 279 LAAQEWKQRKTGKPMGKITISLGVTQYRPNESEVTLIHRVDTALYTAKRNGRNRVVT 335 >gi|168234159|ref|ZP_02659217.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472041|ref|ZP_03078025.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205352320|ref|YP_002226121.1| hypothetical protein SG1069 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856501|ref|YP_002243152.1| hypothetical protein SEN1023 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194458405|gb|EDX47244.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205272101|emb|CAR36954.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205331864|gb|EDZ18628.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|206708304|emb|CAR32607.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627369|gb|EGE33712.1| ggdef domain-containing protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 570 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 L+L+ + T LL+ + + ++K +F+ N + + D L+ L N A Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421 Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY AK+SGRNR +C SD Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562 >gi|161613445|ref|YP_001587410.1| hypothetical protein SPAB_01161 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362809|gb|ABX66577.1| hypothetical protein SPAB_01161 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 570 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 L+L+ + T LL+ + + ++K +F+ N + + D L+ L N A Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421 Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY AK+SGRNR +C SD Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562 >gi|192361895|ref|YP_001983925.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107] gi|190688060|gb|ACE85738.1| GGDEF domain protein [Cellvibrio japonicus Ueda107] Length = 512 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N A+ + Y L+I DID+FK+INDN+GH GD+VI + Sbjct: 355 DALTELPNREAYNERARAEVQRWERYGRPLAIAIIDIDHFKKINDNYGHQAGDRVIKVIG 414 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + F R GGEEF A +S A I+ +R I + N P + IT Sbjct: 415 RSIAKRLREVDFFCRYGGEEFVALMPETSGDNALIVLEKIRDAIARAAFNYKEQP-LQIT 473 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ISAG+ E + + + RADQALY AK +GRN Sbjct: 474 ISAGLTEFKPGDTLDSAFERADQALYAAKSNGRN 507 >gi|189404017|ref|ZP_02786585.2| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4501] gi|189405928|ref|ZP_02825262.2| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC508] gi|189368093|gb|EDU86509.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC4501] gi|189377384|gb|EDU95800.1| MASE2 domain/diguanylate cyclase [Escherichia coli O157:H7 str. EC508] gi|326346083|gb|EGD69822.1| Protein YaiC [Escherichia coli O157:H7 str. 1125] Length = 366 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 171 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P +++ IS G+A P++ + Y Sbjct: 290 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVNLRISVGVA------PLNPQMSHY 340 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362 >gi|149180978|ref|ZP_01859479.1| GGDEF domain protein [Bacillus sp. SG-1] gi|148851262|gb|EDL65411.1| GGDEF domain protein [Bacillus sp. SG-1] Length = 422 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 9/179 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L++L + N+ +QL ID +G+ N+ F + + L+++F D+DY + + Sbjct: 221 LQKLLQNANK-AQLIYIDEKTGIYNYRFFDEKINELYLLCKKSGKPLTLIFGDMDYLRDV 279 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 N+ FGH GD+ I + F R GGEEF +++ EAA A D+R+ Sbjct: 280 NNKFGHAAGDEAITAIGKVFKDSQQNRFFSARFGGEEFVMILPSTTKDEAARHAEDVRRK 339 Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 IE+ + G I ++IS G+A E I T+I AD+ALY AK++GRN+V + + Sbjct: 340 IEDINLLSEEGEKIPLSISLGVASFPADAEDIQTLIQSADEALYEAKRNGRNQVQLYGN 398 >gi|320085396|emb|CBY95177.1| Cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 570 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 L+L+ + T LL+ + + ++K +F+ N + + D L+ L N A Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421 Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY AK+SGRNR +C SD Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562 >gi|313673733|ref|YP_004051844.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672] gi|312940489|gb|ADR19681.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672] Length = 495 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 85/172 (49%), Gaps = 14/172 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 KEL +++ LS D L+GL N H F L Y SI+ FD+D FK I Sbjct: 324 KELHDLNDKLKALSETDQLTGLYNRRKLEMHLHHEFTRYL-RYRGVFSIILFDVDNFKSI 382 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 NDN+GH GD V+ LS L R GGEEF ++ Q A I+A +RKI Sbjct: 383 NDNYGHSTGDFVLKELSTLLKKHLRESDLPARWGGEEFLILCPETNGQNALIIAEKIRKI 442 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253 + I +TIS GIAE P I +++ +AD+ LY AK SG+N Sbjct: 443 VSEYDFGIDRA----VTISLGIAEIDENTPNIDSLLVKADKNLYKAKNSGKN 490 >gi|168239226|ref|ZP_02664284.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736370|ref|YP_002115021.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711872|gb|ACF91093.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288064|gb|EDY27451.1| ggdef domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 570 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 L+L+ + T LL+ + + ++K +F+ N + + D L+ L N A Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421 Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY AK+SGRNR +C SD Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562 >gi|90425011|ref|YP_533381.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gi|90107025|gb|ABD89062.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris BisB18] Length = 452 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 14/179 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL R++ L+ D L+GL N F I+ + S+V +D+D+FK +ND Sbjct: 276 ELRDRARRLAVLATTDRLTGLYNRLKFDEALVAEIARAERFRMPFSLVIYDVDHFKVVND 335 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGHP+GD V+A LSD + + R GGEEFA GS + +A LR I Sbjct: 336 AFGHPIGDSVLAGLSDVVSSQLRATDTLARWGGEEFAILVTGS---DGCFVAEKLRTAIA 392 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + G +T S G+ E + ++ RAD ALY AK GRNRV ++ E+ Sbjct: 393 GVSFDRVGG----VTCSFGVTEYLEGDTPEIMVARADAALYQAKVKGRNRVELYASPES 447 >gi|88799986|ref|ZP_01115557.1| probable two-component response regulator [Reinekea sp. MED297] gi|88777264|gb|EAR08468.1| probable two-component response regulator [Reinekea sp. MED297] Length = 539 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 105/198 (53%), Gaps = 19/198 (9%) Query: 84 YISGSILKELFIS--YNRISQLSRI------DCLSGLLNHSAFISSLGSYNEK------- 128 +++ + KE+ IS NR + + D L+GL++H+ + +L E Sbjct: 345 FLTKPVPKEVLISTVMNRCRRYRGLHEQVIRDGLTGLVDHNHSLEALNRAIESSEAEGRL 404 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S DID FK +ND +GH +GD++I L+ L F +GR GGEEFA + Sbjct: 405 VSFAMLDIDRFKSVNDTYGHGMGDRIIHALALFLSQRFRVTDTIGRYGGEEFAIVLPDTD 464 Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247 E A L +++R+ +Q+ G +I +T S G+A+ + S++ RAD+ALY+A Sbjct: 465 EATACRLLDEVREGF--AQVEHRRGDLAIQVTFSCGVAQAKPDDDASSLAQRADEALYLA 522 Query: 248 KKSGRNRVVCFSDIENNT 265 KK GRN VC SD +++ Sbjct: 523 KKQGRN-AVCGSDQSDHS 539 >gi|312962462|ref|ZP_07776953.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas fluorescens WH6] gi|311283389|gb|EFQ61979.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas fluorescens WH6] Length = 798 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 96/184 (52%), Gaps = 13/184 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131 +L GY+S + +L + LS D L+G+ N F L + + LS+ Sbjct: 614 TLWHGYVSD--ISDLKRVEEELRALSITDSLTGIHNRRYFQDRLKAEMVRVNRTSGALSV 671 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK+IND +GH VGD V+ L ++ RLGGEEF G+ ++ Sbjct: 672 IMLDIDHFKRINDKYGHAVGDGVLQELCKRISQRLRRTDVFCRLGGEEFMVLCPGTDGEQ 731 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A LA DL +++ N+ + P +T S G+A E I ++ RAD A+YVAK++G Sbjct: 732 AYSLAEDLWRVLRNAPME----PVGIVTASFGVASWRVDEGIDGLLLRADSAVYVAKQAG 787 Query: 252 RNRV 255 R+RV Sbjct: 788 RDRV 791 >gi|313109834|ref|ZP_07795769.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|310882271|gb|EFQ40865.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 542 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 10/160 (6%) Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L LS DID+FKQ+ND FGHP+GD+VI L+ Sbjct: 380 DSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHPMGDRVIKGLA 439 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L +GR GGEEFA + A ++ +++R+ ++I+ + P+ + Sbjct: 440 LFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRF--AEIHYPAQPTDLRC 497 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 T S GIAE I ++ +AD+ALY AK GRNR+ + Sbjct: 498 TFSCGIAELTPDLDIKSMAKQADEALYRAKHGGRNRIEVY 537 >gi|218893937|ref|YP_002442806.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|218774165|emb|CAW29982.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 542 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 10/160 (6%) Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L LS DID+FKQ+ND FGHP+GD+VI L+ Sbjct: 380 DSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHPMGDRVIKGLA 439 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L +GR GGEEFA + A ++ +++R+ ++I+ + P+ + Sbjct: 440 LFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRF--AEIHYPAQPTDLRC 497 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 T S GIAE I ++ +AD+ALY AK GRNR+ + Sbjct: 498 TFSCGIAELTPDLDIKSMAKQADEALYRAKHGGRNRIEVY 537 >gi|254414369|ref|ZP_05028136.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179044|gb|EDX74041.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 314 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 11/176 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141 ++KE N + +L+ D L+GL N F++ Y +SI+ DID+FKQ Sbjct: 138 LVKEHEKLANLLRKLAITDPLTGLWNRRHFLTVAYQEFNRASRYKRFMSILMIDIDHFKQ 197 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GH +GD+V+ ++ +V + GR GGEEF + A +A LRK Sbjct: 198 INDEYGHTMGDEVLKGVAKSIVGSLREADYCGRFGGEEFVTLLPETDSSGAVRVAERLRK 257 Query: 202 IIENSQINISSG-PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E QI I G + +T++ G+A + I II RA++ALY AK G NRV Sbjct: 258 RME--QITIGIGDKQVQMTVTVGVASYQLDDANIEVIIQRANKALYHAKSQGYNRV 311 >gi|94500044|ref|ZP_01306579.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Oceanobacter sp. RED65] gi|94427902|gb|EAT12877.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Oceanobacter sp. RED65] Length = 538 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/160 (39%), Positives = 86/160 (53%), Gaps = 11/160 (6%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L +E LS DID+FK+INDN+GHPVGDKVI+ LS Sbjct: 378 DSLTGLYNHTHILERLYQACQQSCENDEPLSFAMIDIDFFKKINDNYGHPVGDKVISALS 437 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L +GR GGEEFA + +A + N++RK+ SQ+ S+ + + Sbjct: 438 LFLKQRLRRSDSIGRYGGEEFAIVMPNTKGHDALHVMNEIRKVF--SQLVHSTWETEFTV 495 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + S G+ E II AD+ALY AKK GRN V + Sbjct: 496 SFSGGVCEFTGSNS-EFIIEHADEALYEAKKQGRNNVQLY 534 >gi|85374409|ref|YP_458471.1| response regulator [Erythrobacter litoralis HTCC2594] gi|84787492|gb|ABC63674.1| response regulator [Erythrobacter litoralis HTCC2594] Length = 383 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 21/166 (12%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157 +R D L+GLLN AF G Y + + ++ D+D+FK+INDNFGH GD V+ Sbjct: 221 ARHDALTGLLNRRAF---FGDYADPPAAGRDRFLLMIDLDHFKRINDNFGHDTGDIVLRA 277 Query: 158 LSDQLVVVFGT-PMFVG---RLGGEEFAAAALGSSEQEAAILANDL----RKIIENSQIN 209 +++Q+ V P RLGGEEF G E+ AA+ A +L R+I+ +++ Sbjct: 278 MAEQMQAVAADFPEDTAGCVRLGGEEFILVIDGIDERHAALAAENLRLRARRIVTAQKLD 337 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + ++ S G+A + E + ++ R+D ALY AK GR++V Sbjct: 338 ----PQLRVSASIGLARQREHESLDDVLQRSDLALYRAKDRGRDQV 379 >gi|127514258|ref|YP_001095455.1| diguanylate cyclase [Shewanella loihica PV-4] gi|126639553|gb|ABO25196.1| diguanylate cyclase [Shewanella loihica PV-4] Length = 401 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 8/164 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150 ++ Q + D L+GL N A L +++ S++ FD+D+FKQIND FGH Sbjct: 222 QKMRQQADRDYLTGLWNRRAMQQQLEQLHQRWLRDGQAYSLILFDLDFFKQINDKFGHSA 281 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ + Q+ V RLGGEEF G+ + A I+A L++ + S +N Sbjct: 282 GDAVLVKTAQQIGKVTRAMDIFCRLGGEEFLLVLPGTDGEVAEIIAQKLQQALRQSSLNW 341 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 G I I+ S GI + +++ AD+A+Y AK++GR+R Sbjct: 342 -QGSLIPISASFGIVTTATGDTPDSLLALADKAMYRAKETGRDR 384 >gi|299065972|emb|CBJ37153.1| putative signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum CMR15] Length = 536 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 15/196 (7%) Query: 71 LVIISITISLLLGYISGSILKELFISYNR----ISQLSRIDCLSGLLNHSAFISSLGS-- 124 LV + + SLL + + L S R ++ + D L+G+L F++ + Sbjct: 340 LVFVLVVWSLLRERQHHRVTRHLNQSLQRTNSALANEAHFDHLTGVLTRRRFLALFETVL 399 Query: 125 -----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 E+L +V D+D+FK+IND +GH VGD + + V + +GRLGGEE Sbjct: 400 TRTHVRGEQLVLVLADLDHFKRINDTWGHAVGDLALQRFASLATSVMRSSDLIGRLGGEE 459 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238 FA ++ +EAA + LR + + ++ SG + +T+S G+ CH + S ++ Sbjct: 460 FAVVMSRTTLEEAAGVVERLRASVAEADESLPSG--LAMTVSLGMTA-CHAGDTASEMLR 516 Query: 239 RADQALYVAKKSGRNR 254 RAD ALY AK+SGRNR Sbjct: 517 RADLALYRAKESGRNR 532 >gi|187923576|ref|YP_001895218.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phytofirmans PsJN] gi|187714770|gb|ACD15994.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phytofirmans PsJN] Length = 444 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 9/172 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 + E +S + +++L D L+G+ + + F ++ + LS+V D DYFK+I Sbjct: 249 VTERKVSSDNLARLLTTDHLTGVSSRAHFFEIAEAEVARAERHGRALSVVMLDADYFKRI 308 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GD+V+ ++ + + T V RLGGEEF ++ EA +A LR Sbjct: 309 NDTAGHQAGDEVLKRIAGEAKGLLRTSDTVARLGGEEFILMLPSTTTSEAVAVAERLRVA 368 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253 +E ++I+ + G ++ T+S G+A P + +++ AD+ALY AK++GRN Sbjct: 369 VERARIDTAVG-TLKATVSLGVATVSTANPTLQSLLAAADRALYDAKRAGRN 419 >gi|15600036|ref|NP_253530.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107103942|ref|ZP_01367860.1| hypothetical protein PaerPA_01005013 [Pseudomonas aeruginosa PACS2] gi|116052991|ref|YP_793309.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|254238435|ref|ZP_04931758.1| hypothetical protein PACG_04577 [Pseudomonas aeruginosa C3719] gi|254244259|ref|ZP_04937581.1| hypothetical protein PA2G_05109 [Pseudomonas aeruginosa 2192] gi|296391675|ref|ZP_06881150.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|9951113|gb|AAG08228.1|AE004897_6 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115588212|gb|ABJ14227.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126170366|gb|EAZ55877.1| hypothetical protein PACG_04577 [Pseudomonas aeruginosa C3719] gi|126197637|gb|EAZ61700.1| hypothetical protein PA2G_05109 [Pseudomonas aeruginosa 2192] Length = 542 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 10/160 (6%) Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L LS DID+FKQ+ND FGHP+GD+VI L+ Sbjct: 380 DSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHPMGDRVIKGLA 439 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L +GR GGEEFA + A ++ +++R+ ++I+ + P+ + Sbjct: 440 LFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRF--AEIHYPAQPTDLRC 497 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 T S GIAE I ++ +AD+ALY AK GRNR+ + Sbjct: 498 TFSCGIAELTPDLDIKSMAKQADEALYRAKHGGRNRIEVY 537 >gi|120553102|ref|YP_957453.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120322951|gb|ABM17266.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 368 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 R+ +++ D L+GL N S F S+L ++V DID+FK +ND GH Sbjct: 184 QRLVDMAQTDALTGLANRSNFQSTLARTIAECERSGTGFALVIMDIDHFKLVNDTLGHDA 243 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ + L T FVGRLGGEEF +A L ++LR+ I ++ Sbjct: 244 GDYVLRHIGQSLTERLRTTDFVGRLGGEEFGLILRDVKPGDAFELMDELRERIARRELKY 303 Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T S GIA+ H T+ AD+ LY K++GRNRV Sbjct: 304 GEA-GIRVTASFGIAQWPDHGREAETLFCVADRCLYSGKRAGRNRVA 349 >gi|313683320|ref|YP_004061058.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum kujiense DSM 16994] gi|313156180|gb|ADR34858.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum kujiense DSM 16994] Length = 754 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 13/172 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144 E+ + R+ +++ D L+GL+N L ++ S++ D+DYFK++ND Sbjct: 585 EMGKYHKRLLKMATTDPLTGLVNRIRLDEKLAECHQFYQRTGRHFSVIIIDLDYFKRVND 644 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH +GDK + +S L + VGR GGEEF ++ + LA ++ +IE Sbjct: 645 TYGHLIGDKTLVNISKILSDNIRSIDMVGRWGGEEFMIICPETTSEGGKQLAEKIQSVIE 704 Query: 205 NSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + P IH +T S GI+E + I I+ RAD ALY AK+ GRNRV Sbjct: 705 RNDF-----PYIHTMTCSFGISESREGDRIENIVGRADSALYRAKEEGRNRV 751 >gi|209548849|ref|YP_002280766.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534605|gb|ACI54540.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 440 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 12/173 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 S + L+ D L+G+LN + + EK ++++ FD+D+FK++ND FGH Sbjct: 231 SERHLRALTLTDSLTGVLNRRGLLGYFDAIQEKAHDEQHQVAVMLFDLDHFKRVNDRFGH 290 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ + +F GR+GGEEFAA A + + EA +A +R E ++ Sbjct: 291 QSGDAVLTAFARMARQYIPNSIF-GRMGGEEFAAFAAVTDQTEAEAIAEAIR--TEFCRL 347 Query: 209 NISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259 +S+G +I +T+S GIA E I +I AD+ALY AK +GRN V F Sbjct: 348 PVSTGEAIVPVTVSIGIALASSLEANIDKLISAADRALYAAKAAGRNCTVTFG 400 >gi|297582767|ref|YP_003698547.1| diguanylate cyclase [Bacillus selenitireducens MLS10] gi|297141224|gb|ADH97981.1| diguanylate cyclase [Bacillus selenitireducens MLS10] Length = 520 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 18/183 (9%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDN 145 L+ +I L+ D L+G +N +AFI+ L N+ LS+ DID+FK+IND Sbjct: 344 LYYERRKIRHLAHTDQLTGQMNRNAFINHANRLIRLSVKNKTPLSVALLDIDHFKKINDT 403 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD+ + ++ + R GGEEF + E+EA I + +R I Sbjct: 404 YGHKTGDQALQEIATSIREALDESDLFARWGGEEFVIMMPETREKEAEIRLDAIRATIAG 463 Query: 206 ---SQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +Q+ ITIS GI R ++ + +I AD+ALY AK GRNRVV + Sbjct: 464 KAFTQVGT-------ITISIGITGARPDRDSLEQLIASADEALYEAKNKGRNRVVLYRSP 516 Query: 262 ENN 264 +N Sbjct: 517 RSN 519 >gi|187478249|ref|YP_786273.1| signaling protein [Bordetella avium 197N] gi|115422835|emb|CAJ49363.1| putative signaling protein [Bordetella avium 197N] Length = 381 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 116/237 (48%), Gaps = 19/237 (8%) Query: 27 FMIYFSIFFSIFIATVIFIANIFLFYIGLTP-FYGLEYILVENLSLVIISITISLLLGYI 85 FM+ ++ +I T A ++ ++I TP Y + LSL ++ I SL LG I Sbjct: 152 FMLCLALLATIGHVTR---AVLYTWWIDFTPGLLAPTYWNIVFLSLGVV-IMPSLTLGMI 207 Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFK 140 +L + + + + D L+G+L+ A+ + G+ ++++ DID+FK Sbjct: 208 M--MLHDRMLRER--EREANTDFLTGVLSRKAWWGAASRLAAGARGRPIAVLLLDIDHFK 263 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 ++ND GH GD V+ + G P+ GRLGGEEF AA G+S EA LA Sbjct: 264 RVNDRLGHAAGDVVLRHFAAVAGAALRPGDPL--GRLGGEEFIAALPGASMDEAQALATR 321 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + P + T S G+ EP+ + RAD+A+Y AKK+GR+RV Sbjct: 322 MLAALRAMPCQFGDHP-VGYTFSGGVTVWDGTEPLHNAMERADRAMYQAKKNGRSRV 377 >gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300076114|gb|ADJ65513.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 501 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 102/210 (48%), Gaps = 18/210 (8%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122 L L+I + +LL + +LK + + ++ L+R D L+GLLN + +L Sbjct: 293 LLLIIFTALAGVLLMLVRRELLKRV-AAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQR 351 Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLG 176 S S +F D+DYFK+ ND +GH +GD V+ A L + L GR G Sbjct: 352 SQRSPTAGFSTLFIDVDYFKRYNDTYGHEMGDTVLQAVAAVLREHLQR---QNDLAGRYG 408 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPIS 234 GEEF + E A +A L + I N I S P I++S G+A R + + Sbjct: 409 GEEFVVLLEQTDEHGALRMAQQLCEAIYNRGIPHSGSPLGVISVSIGVATMNRAPHQRME 468 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENN 264 ++ AD ALY+AK+ GRNRV +N+ Sbjct: 469 DVLNAADHALYIAKREGRNRVCVAHPGQND 498 >gi|256822386|ref|YP_003146349.1| response regulator receiver modulated diguanylate cyclase [Kangiella koreensis DSM 16069] gi|256795925|gb|ACV26581.1| response regulator receiver modulated diguanylate cyclase [Kangiella koreensis DSM 16069] Length = 426 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 9/180 (5%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDI 136 Y+ ++ I Y +++ + D L+GL N F +S ++ ++ DI Sbjct: 238 YLRVAVNTSRVIEYEKLTTAATKDYLTGLNNRRHFYELVEVMHNSAVRHSTPIACALVDI 297 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FKQ+ND +GH VGD V+ ++ L V R GGEEF +G + + + I Sbjct: 298 DHFKQVNDTYGHQVGDAVLTEIAKILESSVRKSDVVARFGGEEFCMYMVGINRENSEIFF 357 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + L K +EN+ I+I G + +TIS G+ H + ++I ADQ LY AK++GRN+VV Sbjct: 358 DKLLKRVENTAIDI-DGLEVKVTISIGV-NINHHHVLDSMIEIADQCLYEAKETGRNKVV 415 >gi|254457004|ref|ZP_05070432.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207085796|gb|EDZ63080.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 334 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 12/167 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L+ D L+GL N I+ + ++SI+F DID FK IND +GH +G Sbjct: 173 ELNALAITDKLTGLYNRVKLDKVLDLEINKMVKLQAEISIIFIDIDRFKPINDTYGHQIG 232 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ S L VGR GGEEF ++ + + LA +LRKIIEN+ Sbjct: 233 DKVLQSFSQVLKNNIRKTDIVGRWGGEEFLIICHEANIEGSLHLAENLRKIIENTSFEYI 292 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +T S G+A + I +++ RAD+ALY AK +GRN+ VCF Sbjct: 293 K----ELTASFGVASFEDGDSIDSLVERADKALYKAKHNGRNK-VCF 334 >gi|15639965|ref|NP_219418.1| sensory transduction histidine kinase, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189026204|ref|YP_001933976.1| sensory transduction histidine kinase [Treponema pallidum subsp. pallidum SS14] gi|3323303|gb|AAC65936.1| sensory transduction histidine kinase, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189018779|gb|ACD71397.1| possible sensory transduction histidine kinase [Treponema pallidum subsp. pallidum SS14] Length = 387 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 24/214 (11%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS-RIDCLSGLLN 114 TP+ + I+++ L I+I +LLL + ++ ++ + + + L+ ++D LS Sbjct: 191 TPYD--QSIIMDIAQLAAIAINNALLLEQATTDMMTQMKLKHYFFAMLTAKLDTLST--- 245 Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 E +S++ DID+FKQIND GH GD V+ +++ + R Sbjct: 246 -----------QETVSVLMLDIDFFKQINDTHGHLCGDLVLQHVAEIIRSCTRPCDIASR 294 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERC-HKEP 232 GGEEF +S +EAA +A +R + Q+ I SI +T+SAG+AE ++E Sbjct: 295 YGGEEFMLMLSNNSSREAAHVAERIR--VATEQLTIPYHEVSIRVTVSAGVAEYLPNQES 352 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 T+I RAD ALY AK++GRN+VV E N C Sbjct: 353 AETLIKRADSALYQAKQNGRNKVVIS---EKNMC 383 >gi|254505767|ref|ZP_05117913.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16] gi|219551420|gb|EED28399.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16] Length = 303 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/191 (36%), Positives = 98/191 (51%), Gaps = 12/191 (6%) Query: 73 IISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSA---FISSL----GS 124 II I ++G I S + +L ++++L+ D L+ L N F SS Sbjct: 112 IICINTKKVIGLIGVSTDITDLVNMREKLAELANTDELTKLCNRRKLWQFFSSAYHQASE 171 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 N LS + DID+FK+IND GH GDKVI L+D + + GR+GGEEF Sbjct: 172 LNTPLSCIVIDIDHFKKINDAHGHDFGDKVIVELADIIRRNLRSTDCCGRIGGEEFLIVL 231 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQA 243 +S Q A +A LR +NS +N + P TIS G+ E ++ +Y RADQA Sbjct: 232 SNTSAQGAHDIAERLRTNFQNSPLNHVTAP---FTISCGVTELTPEDCDFFALYRRADQA 288 Query: 244 LYVAKKSGRNR 254 LY AK +GRN+ Sbjct: 289 LYDAKHNGRNK 299 >gi|46908407|ref|YP_014796.1| GGDEF domain-containing protein [Listeria monocytogenes serotype 4b str. F2365] gi|254931714|ref|ZP_05265073.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262] gi|46881678|gb|AAT04973.1| GGDEF domain protein [Listeria monocytogenes serotype 4b str. F2365] gi|293583269|gb|EFF95301.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262] gi|328472195|gb|EGF43066.1| GGDEF domain-containing protein [Listeria monocytogenes 220] gi|332312625|gb|EGJ25720.1| GGDEF domain protein [Listeria monocytogenes str. Scott A] Length = 357 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 21/201 (10%) Query: 74 ISITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSY----N 126 I ++I+L++G +S ++K + S + + Q S +D L+ L N F + + Sbjct: 162 IFVSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDDGS 221 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEF 180 +++++ DIDYFK IND +GH GD ++ QL ++ G+ F R GGEEF Sbjct: 222 RQVTLMLIDIDYFKNINDTYGHDAGDAILK----QLAIILKRNTSDGSEAF--RNGGEEF 275 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR- 239 + L ++ A +RK E+ I SG + ITIS G++ S +++ Sbjct: 276 SIVLLDCPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKS 335 Query: 240 ADQALYVAKKSGRNRVVCFSD 260 AD+ALY AK +GRNR VC +D Sbjct: 336 ADEALYKAKLTGRNR-VCIAD 355 >gi|315282939|ref|ZP_07871233.1| ggdef domain-containing protein [Listeria marthii FSL S4-120] gi|313613411|gb|EFR87261.1| ggdef domain-containing protein [Listeria marthii FSL S4-120] Length = 367 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 11/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYN------EKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N F + ++N LS++ DIDYFK++ND +GH VG+ Sbjct: 194 LQQSTILDPLTGLTNFRHFEKTFEAAFNYATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 253 Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 254 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIVLPNINVSETQYLAEKIRRKVEKIDVPIV 313 Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA + S +++ ADQALY AK++GRN+V Sbjct: 314 ASGSV-ITISAGIANYDGENYPSANELLHAADQALYNAKRNGRNQV 358 >gi|170767858|ref|ZP_02902311.1| MASE2 domain/diguanylate cyclase [Escherichia albertii TW07627] gi|170123346|gb|EDS92277.1| MASE2 domain/diguanylate cyclase [Escherichia albertii TW07627] Length = 320 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 23/200 (11%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 125 LSLPII-IIYPLLFGWVSYQTAIKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 183 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 184 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 243 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII--YR 239 G+ + A + + + N + +S+ P + + IS G+A P++ + YR Sbjct: 244 VIMSGTPAENAITAMLRVHEGLNN--LRLSNAPQVVLRISVGVA------PLNPQMSHYR 295 Query: 240 -----ADQALYVAKKSGRNR 254 AD ALY AKK+GRNR Sbjct: 296 EWLKSADMALYKAKKAGRNR 315 >gi|194446695|ref|YP_002041251.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405358|gb|ACF65580.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 570 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 L+L+ + T LL+ + + ++K +F+ N + + D L+ L N A Sbjct: 362 LTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAK 421 Query: 125 -YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 422 RYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + Sbjct: 482 CIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY AK+SGRNR +C SD Sbjct: 542 LADKRLYYAKQSGRNR-ICASD 562 >gi|262158743|ref|ZP_06029856.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|262029316|gb|EEY47967.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] Length = 461 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+G+ N +F L + + L+++ FDID FK IND FG Sbjct: 289 QQLEEANQKLSYLAKTDSLTGIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFG 348 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 349 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 408 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 409 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 456 >gi|172038658|ref|YP_001805159.1| putative adenylate cyclase [Cyanothece sp. ATCC 51142] gi|171700112|gb|ACB53093.1| putative adenylate cyclase [Cyanothece sp. ATCC 51142] Length = 592 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 9/138 (6%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 ++ S++ D+D+FKQ ND +GHP GD+ + ++ ++ FV R GGEEFA Sbjct: 449 KQTSLILCDVDHFKQYNDTYGHPAGDRCLQKVAKEIRTAIRRTDFVARYGGEEFAIILPR 508 Query: 187 SSEQEAAILAND-LRKIIENSQINISSGPSI---HITISAGIAERCHKEPIST--IIYRA 240 + QEA +A L K+I +NIS S+ ++TIS GI+ ++ +ST +I +A Sbjct: 509 TDRQEAKKIAQRILEKVIS---LNISHNTSLTSDYVTISCGISSLFLQDQLSTKRLINQA 565 Query: 241 DQALYVAKKSGRNRVVCF 258 D+ALY AK+ GRNRV+ + Sbjct: 566 DKALYQAKQEGRNRVIVY 583 >gi|149188686|ref|ZP_01866978.1| GGDEF family protein [Vibrio shilonii AK1] gi|148837596|gb|EDL54541.1| GGDEF family protein [Vibrio shilonii AK1] Length = 467 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 90/181 (49%), Gaps = 8/181 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDI 136 LLL Y + EL + + LS D L+GL N F+ L Y L+I+ DI Sbjct: 275 LLLRYTVNTRTNELANANRELKVLSETDALTGLSNRRYFLEKLEKYRHTGGYLAIIVIDI 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAIL 195 D FK+IND FGH GDKVI +++ + + + + R+GGEEFA + E + Sbjct: 335 DDFKKINDTFGHVQGDKVIKSVANSIRSLLKSDCVIARIGGEEFALVYVYQGFEYSYQLS 394 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 N R I E +I P +T+S G A T +Y AD+ +YVAKK G+NR Sbjct: 395 QNICRSIRELDVKDICCQP---VTVSVGCAVYEDASECET-LYEADRLMYVAKKQGKNRA 450 Query: 256 V 256 V Sbjct: 451 V 451 >gi|313681775|ref|YP_004059513.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM 16994] gi|313154635|gb|ADR33313.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM 16994] Length = 602 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 84/165 (50%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++ L+ +D L+ + N F LG Y LS++ DID+FK INDNFGH VGD Sbjct: 442 LNNLATVDMLTQVTNRFEFDKMLGHSISVSKRYGRTLSVLLVDIDHFKLINDNFGHLVGD 501 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ S L V R GGEEF ++ A I+A LR+ IE + Sbjct: 502 EVLKSFSSLLRQQIRQSDIVARWGGEEFIILLPDTALSSAIIMAEALRQRIEVNPFEAVG 561 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +IT S G+AE E ++ RAD+ LY AK SGRNRVV Sbjct: 562 ----NITCSIGVAEFNSVEEADDLLQRADENLYRAKHSGRNRVVA 602 >gi|71735762|ref|YP_273743.1| GGDEF domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556315|gb|AAZ35526.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 323 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 20/222 (9%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L P L + + + + + + + +G++S + +L+ N + ++SR D L+GLLN Sbjct: 100 LNPAVNLHGNMAQIYACLPVLVIYPIFIGWMSHQVTLKLWEHRNILRKISRTDSLTGLLN 159 Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 H A+ L + +++ I DID+FK IND +GH +GD V+ +S+ L+ Sbjct: 160 HGAWKDLLDLEYVKSQNQHQQCVIALIDIDHFKVINDTYGHLMGDTVLQNISEALMENLR 219 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISA 222 +GR GG+EF + +A R+I+E +++ I S + +++S Sbjct: 220 DSDLIGRCGGDEFCVILPDTHLFQA-------REILERTRLAIDEMTYSLQRDLKVSLSI 272 Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 GIA + P S+ ++ AD+ALY+AK +GRN V D+ + Sbjct: 273 GIAAYSPELPDASSWLHEADKALYLAKSTGRNCVASAQDMPS 314 >gi|302337375|ref|YP_003802581.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta smaragdinae DSM 11293] gi|301634560|gb|ADK79987.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta smaragdinae DSM 11293] Length = 528 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 15/194 (7%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNE 127 +I+ SLLL + ++ K+ + +R+ +LS D L+G+ N F+S L Y Sbjct: 340 TISDSLLLSFTDITLRKK---TESRLFELSLKDELTGIYNRRHFVSVLSQELQHYQRYGT 396 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 +S++ FDID FK IND +GHP GD ++ LS ++ R GGEEFA G Sbjct: 397 PISLLLFDIDLFKIINDTWGHPAGDFILRELSSRIAGQIRDIDIFFRTGGEEFAVVMPGI 456 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALY 245 + ++ I A LR I+ ++ + I +TIS G+ AE+ + +P S +AD LY Sbjct: 457 TLEQGEIAAERLRVIVADTPF-LWESEEITVTISIGLAEAEQPNSDPKS-FFRKADDRLY 514 Query: 246 VAKKSGRNRVVCFS 259 AKK GRN VC S Sbjct: 515 WAKKEGRN-CVCSS 527 >gi|289678107|ref|ZP_06498997.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 418 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N + I ++ + S++ DID+FK +ND +GHP Sbjct: 255 QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 314 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI ++ L R GGEEF SS ++AA LA +RK +E+ I Sbjct: 315 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRKSVESLVIPE 374 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +TIS G+AE E +++I RAD+ALY AK+ GRNRV C Sbjct: 375 TGS----VTISLGVAELGAGETAASLIQRADKALYQAKRLGRNRVEC 417 >gi|317051149|ref|YP_004112265.1| diguanylate cyclase [Desulfurispirillum indicum S5] gi|316946233|gb|ADU65709.1| diguanylate cyclase [Desulfurispirillum indicum S5] Length = 549 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 80/159 (50%), Gaps = 10/159 (6%) Query: 107 DCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNH+ + N L DID+FK++ND GHPVGD+VI LS Sbjct: 389 DGLTGLLNHTESKRQLDILLERAKRANTPLCFAMLDIDHFKRVNDAHGHPVGDRVIKSLS 448 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218 L VGR GGEEF ++E + + +LR+ + + +G S Sbjct: 449 HFLQQRLRKTDVVGRYGGEEFVIIFPDTTESDGQRVMEELREKF--AMVTHHAGDQSFQC 506 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T S GIA H + I+ RADQALY AK GRN+V+ Sbjct: 507 TFSCGIATFPHFSNATEIVDRADQALYSAKNQGRNKVIA 545 >gi|71282198|ref|YP_270823.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71147938|gb|AAZ28411.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 431 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 95/173 (54%), Gaps = 11/173 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N++ L+R D L+GL N + +SS E+LSI+ D+D+FK+IND+FGH + Sbjct: 257 NKLILLTRTDALTGLSNRNTLFKHGEKMVSSFTEQPEELSILLLDLDHFKKINDSFGHDI 316 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ +SD + + + R GG+EF A + +A +A + + I SQ + Sbjct: 317 GDEILMAVSDLVKETMRSRDLLARFGGDEFVALLPFADSNKAKAIAMRINEKI--SQYDF 374 Query: 211 SSGP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 SS +T S G+A +K +++ AD A+Y AK GRN V+C+ +I Sbjct: 375 SSLVLQSRVTFSIGVATMADNKMSFDDLLHDADLAMYQAKDQGRNTVICYQNI 427 >gi|47091842|ref|ZP_00229637.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858] gi|47019853|gb|EAL10591.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858] Length = 307 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 21/201 (10%) Query: 74 ISITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISS----LGSYN 126 I ++I+L++G +S ++K + S + + Q S +D L+ L N F + + Sbjct: 112 IFVSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDDGS 171 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEF 180 +++++ DIDYFK IND +GH GD ++ QL ++ G+ F R GGEEF Sbjct: 172 RQVTLMLIDIDYFKNINDTYGHDAGDAILK----QLAIILKRNTSDGSEAF--RNGGEEF 225 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR- 239 + L ++ A +RK E+ I SG + ITIS G++ S +++ Sbjct: 226 SIVLLDCPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKS 285 Query: 240 ADQALYVAKKSGRNRVVCFSD 260 AD+ALY AK +GRNR VC +D Sbjct: 286 ADEALYKAKLTGRNR-VCIAD 305 >gi|323495200|ref|ZP_08100284.1| putative GGDEF protein [Vibrio brasiliensis LMG 20546] gi|323310559|gb|EGA63739.1| putative GGDEF protein [Vibrio brasiliensis LMG 20546] Length = 321 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 15/177 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDN 145 L S ++S LS+ D L+ L N + + +L E S+V FDID+FK++ND Sbjct: 143 LMDSNQKLSNLSQTDGLTKLYNRAHWEVNLQKEYEHCQVTGEVSSLVIFDIDHFKRVNDT 202 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH VGD+VI ++ L + GR GGEEF G+ +A LRK IE+ Sbjct: 203 YGHTVGDEVIRHAAEALKRASRSSDICGRYGGEEFTVILPGTCANQALYFTERLRKRIES 262 Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVVCF 258 S + + TIS G+ C P+ + + AD++LY +K+SGRNR F Sbjct: 263 SVVKCEQ-HDVKYTISLGV---CEISPLQSSHLAWLEHADKSLYFSKESGRNRSTVF 315 >gi|144900928|emb|CAM77792.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 539 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 8/163 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++ + D L+GL N FI L++++ D+D+FK INDN+GH +GD Sbjct: 373 LTHQAMTDPLTGLCNRRHFILRANEELHRARRTGAPLAVLYLDVDHFKTINDNYGHGLGD 432 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ G + R+GGEEFAA G + A + A LR+ + Sbjct: 433 QVLVTVARACRDALGGEDLLARMGGEEFAAVLPGQDKVAAQMTAERLRRCLGEVVTRSED 492 Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254 G I ITIS G+A + + T++ RAD+ALY AK GRNR Sbjct: 493 GRLITITISIGVATLADDDGDMLTVLDRADRALYQAKTLGRNR 535 >gi|170720358|ref|YP_001748046.1| diguanylate cyclase [Pseudomonas putida W619] gi|169758361|gb|ACA71677.1| diguanylate cyclase [Pseudomonas putida W619] Length = 361 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 95/188 (50%), Gaps = 16/188 (8%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLS--I 131 L LG++ + +L R+ LS D L+GLLNH A+ L N ++ I Sbjct: 159 PLALGWVCYRLAIKLAEHKRRLRDLSLTDSLTGLLNHGAWKDLLLLRFQACQNLQMPSVI 218 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID+FK IND FGH VGD V+ +SD+L GR GG+EF +SE E Sbjct: 219 ALIDIDHFKTINDTFGHVVGDCVLRKMSDELRRNLRAGDLAGRYGGDEFCVILPDTSESE 278 Query: 192 AAILANDLRKII---ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 A LR+ I + Q+ P + I++S G++ R + + +AD+ALY A Sbjct: 279 ARQAMERLRERIVCYRDPQL-----PHLKISLSIGMSSFRADLQSPEHWLEKADKALYCA 333 Query: 248 KKSGRNRV 255 K+ GR++V Sbjct: 334 KRRGRDQV 341 >gi|120597069|ref|YP_961643.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|146291491|ref|YP_001181915.1| diguanylate cyclase [Shewanella putrefaciens CN-32] gi|120557162|gb|ABM23089.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|145563181|gb|ABP74116.1| diguanylate cyclase [Shewanella putrefaciens CN-32] Length = 486 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 107/211 (50%), Gaps = 23/211 (10%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLL 113 L F+G NL+L +I +T+ +L +IS L Y R + ++ D L+G Sbjct: 288 LNTFWG-------NLALSLI-VTMGIL--FISNMTLGR----YQRKLEMMASTDKLTGAA 333 Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N F +K +SI+ DID+FK++ND++GH +GD V+ +++ L + Sbjct: 334 NRQVFEEYFRQALDKAKLTQSPISILLLDIDHFKKVNDSYGHGMGDLVLKTMANMLRGLL 393 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 + R GGEEF AA A +R +I +I + +G I IT S G+AE Sbjct: 394 QPQDILCRWGGEEFLILLPEMDLSRAAEFAEQIRDLISLREIKV-NGLHISITASIGVAE 452 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +EP +I RAD ALY AK +GRN+VV Sbjct: 453 HQAQEPAEDLIKRADLALYQAKAAGRNQVVL 483 >gi|134291268|ref|YP_001115037.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis G4] gi|134134457|gb|ABO58782.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis G4] Length = 432 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 7/155 (4%) Query: 107 DCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GL N F++ LG+ ++ LS+ DIDYFK+IND +GH +GD+V+ L+ Sbjct: 276 DALTGLANRREFLNFVEKVLGT-DDLLSVFILDIDYFKKINDGYGHDIGDEVLRVLAKVG 334 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITIS 221 + + R GGEEF AA G+ + +A LR+ E + I T+S Sbjct: 335 MSIPHESGLFARWGGEEFVAALPGADAADVRRIAETLRRRFEEQDFEHAWRVKPIQFTVS 394 Query: 222 AGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255 G+ R + + ++ RAD+ALY AK+SGRNR+ Sbjct: 395 IGVVTREAGERDVDALMRRADRALYAAKESGRNRI 429 >gi|330447521|ref|ZP_08311169.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491712|dbj|GAA05666.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 421 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 77/148 (52%), Gaps = 5/148 (3%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D ++ L + F + N + S++ FDID+FK INDNFGH VGDKVI + L Sbjct: 275 DSMTHCLRRNVFDMKYKTLNSR-SVILFDIDHFKFINDNFGHAVGDKVIIAMGKMLQQQA 333 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 R GGEEF +++Q A LR +E + +TIS G++E Sbjct: 334 KKHHLYFRWGGEEFLVLLPKTNKQALLRYAETLRAAVEEMPL----LKDRKVTISLGVSE 389 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNR 254 + +E I IYRAD ALY AK+ GRN+ Sbjct: 390 QKQQEHIHQTIYRADMALYQAKQLGRNK 417 >gi|149186785|ref|ZP_01865096.1| diguanylate cyclase with PAS/PAC sensor [Erythrobacter sp. SD-21] gi|148829693|gb|EDL48133.1| diguanylate cyclase with PAS/PAC sensor [Erythrobacter sp. SD-21] Length = 362 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 79/172 (45%), Gaps = 10/172 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 E R + + D L+ L N + ++ L E LS++ FD+D+FK +ND Sbjct: 191 EAIAQAERAKKEAETDALTELANRRSVMAELDRAVVRARQDGESLSVIVFDVDHFKHVND 250 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GHP GD+V+ + VGR+ GEEF Q A A LR IE Sbjct: 251 RHGHPAGDRVLGMIGKIAARQARERDVVGRIRGEEFLWIMPSCDVQSALRAAERLRWAIE 310 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S P +TISAG AE + T+ RAD ALY AK+ GRNRV Sbjct: 311 ---AGTHSAPVPSVTISAGHAELQDGDAALTLFARADTALYNAKREGRNRVA 359 >gi|296447289|ref|ZP_06889217.1| response regulator receiver modulated diguanylate cyclase [Methylosinus trichosporium OB3b] gi|296255154|gb|EFH02253.1| response regulator receiver modulated diguanylate cyclase [Methylosinus trichosporium OB3b] Length = 455 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 8/166 (4%) Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ +D L+GL N ++ + + L+++ DID+FK +ND+FGH GD+V Sbjct: 289 ELAAVDPLTGLNNRRYLETHLASLLDNAAHQGRALTLMILDIDHFKSVNDSFGHDAGDEV 348 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSG 213 + + ++ V + + RLGGEEF + A +A +R I++ I ++G Sbjct: 349 LKNFARRMRRVVRSADLICRLGGEEFVIVMPDTPLAIATRVAERVRATIQSEPFCIDAAG 408 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +I +T S GIAER + +++ RAD+ALY +K +GRNRV + Sbjct: 409 RTIPVTASIGIAERGREANPDSLLRRADKALYESKSAGRNRVTAAA 454 >gi|255025094|ref|ZP_05297080.1| ggdef domain protein [Listeria monocytogenes FSL J2-003] Length = 357 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 17/197 (8%) Query: 76 ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128 + I+L++G +S ++ K+LF Y + S L + LS + I+ + S + + Sbjct: 164 VLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDSGSRQ 223 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184 ++++ DIDYFK IND +GH GD ++ QL V+ G R GGEEF+ Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAVILKESTTDGSEAFRNGGEEFSIVL 279 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQA 243 L S +E +A +RK E I G + ITIS G++ S +++ AD+A Sbjct: 280 LDCSIEEGNKVAEQVRKETEEHDFVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEA 339 Query: 244 LYVAKKSGRNRVVCFSD 260 LY AK +GRNR VC +D Sbjct: 340 LYKAKLTGRNR-VCIAD 355 >gi|152991274|ref|YP_001356996.1| hypothetical protein NIS_1532 [Nitratiruptor sp. SB155-2] gi|151423135|dbj|BAF70639.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 332 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 80/152 (52%), Gaps = 3/152 (1%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ L N +A + E S++ DID FK+IND FGH GDKV+ L + Sbjct: 177 DPLTNLYNRNALKKEIKLLEEASLPYSVIIIDIDDFKKINDTFGHIAGDKVLRELGEIFH 236 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V R GGEEF L + A LA L+++I + I + G +I +T S G Sbjct: 237 TYVRKDSKVYRYGGEEFLIILLHTDIDGAKKLAQRLKEVISHHTIVLDDGTNIIVTASFG 296 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IA++ E ++ RADQALY AK+ G+NRV Sbjct: 297 IAQKKGDESFERVLKRADQALYKAKRDGKNRV 328 >gi|144898743|emb|CAM75607.1| GGDEF domain [Magnetospirillum gryphiswaldense MSR-1] Length = 355 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 10/207 (4%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI---- 119 IL E ++ ++ + L SG I + L +++ + + D L+GL N F Sbjct: 139 ILDETKVMIEVNRQLEERLETSSGEIAR-LREDLDQLKREATTDALTGLANRKLFDVSLR 197 Query: 120 -SSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 ++L S ++ LS++ DID+FKQ ND GH +GD+V+ ++ + R G Sbjct: 198 EAALESEEDRKFLSLLMIDIDFFKQFNDTHGHMLGDQVLKLVARTIQDCIKGKDTAARYG 257 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITISAGIAERCHKEPIS 234 GEEFA + ++ +A +R+ + ++ N +G + +T+S G+AE E + Sbjct: 258 GEEFAIILPDTRLKDGVAVAETVRRQVAGRKVLNRRTGQVLGQVTLSVGVAEYEFGETLG 317 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDI 261 I+RAD+ALY+AK+ GRN V D+ Sbjct: 318 AFIHRADEALYLAKRQGRNHVASQDDL 344 >gi|288960271|ref|YP_003450611.1| GGDEF domain-containing protein [Azospirillum sp. B510] gi|288912579|dbj|BAI74067.1| GGDEF domain-containing protein [Azospirillum sp. B510] Length = 402 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/192 (36%), Positives = 98/192 (51%), Gaps = 15/192 (7%) Query: 81 LLGYISGSILKELFIS--YNR-ISQLSRIDCLSGLLNHSAFISSLGS--------YNEKL 129 LLG + G+I L S +NR +S+L+ D L+G LN LG + L Sbjct: 204 LLGTVIGAINYVLMASDEFNRELSKLAHTDGLTGSLNRRRLFE-LGEVEFRRSRRHGRAL 262 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DID FK IND GHP GD+VI ++D +GR+GGEEFA G E Sbjct: 263 TVLTLDIDRFKSINDRAGHPFGDRVIQAVADCCAGQIRHEDVMGRIGGEEFAILLPGIGE 322 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVA 247 + +LA LR IE + + + +T S G R H E S +I ++D ALY A Sbjct: 323 EAGRLLAERLRATIERQLAPLGTEGGVTVTCSIGGVSLTREHGE-FSDLIAQSDCALYDA 381 Query: 248 KKSGRNRVVCFS 259 K +GRN+V F+ Sbjct: 382 KNAGRNQVRFFA 393 >gi|227115159|ref|ZP_03828815.1| putative signaling protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 235 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 4/151 (2%) Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+G+ N A I + E+ +++ DID+FKQ+ND +GHP GD VI L ++ Sbjct: 84 DPLTGVYNRGAIIERINHALERNQAALIVLDIDHFKQVNDTYGHPTGDAVICDLVSRVQN 143 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 V T +GR+GGEEF G++ +A LA+ L + + +++ +S P +T S G+ Sbjct: 144 VLNTTSSIGRVGGEEFTILLEGNTLMQAVSLASRLHQDL--NRMPLSVLPQQRVTASFGV 201 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + K + AD ALY AK+ GRNRV Sbjct: 202 SWAPQKTRFDALYGAADAALYQAKEKGRNRV 232 >gi|226224781|ref|YP_002758888.1| hypothetical protein Lm4b_02199 [Listeria monocytogenes Clip81459] gi|254825263|ref|ZP_05230264.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194] gi|254853300|ref|ZP_05242648.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503] gi|254993341|ref|ZP_05275531.1| hypothetical protein LmonocytoFSL_10262 [Listeria monocytogenes FSL J2-064] gi|255521935|ref|ZP_05389172.1| hypothetical protein LmonocFSL_12057 [Listeria monocytogenes FSL J1-175] gi|300764018|ref|ZP_07074014.1| hypothetical protein LMHG_10737 [Listeria monocytogenes FSL N1-017] gi|225877243|emb|CAS05957.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606660|gb|EEW19268.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503] gi|293594509|gb|EFG02270.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194] gi|300515359|gb|EFK42410.1| hypothetical protein LMHG_10737 [Listeria monocytogenes FSL N1-017] gi|328465980|gb|EGF37161.1| hypothetical protein LM1816_07998 [Listeria monocytogenes 1816] Length = 357 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 21/201 (10%) Query: 74 ISITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISSLGSY----N 126 I ++I+L++G +S ++K + S + + Q S +D L+ L N F + + Sbjct: 162 IFVSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDDGS 221 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEF 180 +++++ DIDYFK IND +GH GD ++ QL ++ G+ F R GGEEF Sbjct: 222 RQVTLMLIDIDYFKNINDTYGHDAGDAILK----QLAIILKRNTSDGSEAF--RNGGEEF 275 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR- 239 + L ++ A +RK E+ I SG + ITIS G++ S +++ Sbjct: 276 SIVLLDCPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKS 335 Query: 240 ADQALYVAKKSGRNRVVCFSD 260 AD+ALY AK +GRNR VC +D Sbjct: 336 ADEALYKAKLTGRNR-VCIAD 355 >gi|239995065|ref|ZP_04715589.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126] Length = 586 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 28/225 (12%) Query: 54 GLTP-----FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108 GL P F G+E +V +SL ++ISL Y K++ + + +R+D Sbjct: 374 GLIPYSKWAFRGIEIGMVLEMSL----LSISLAFNY------KQVQQARRNAERDARLDP 423 Query: 109 LSGLLNHSAF------ISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L N AF I +G + K +S++ DID+FK IND +GH +GDKV+ ++++ Sbjct: 424 LTSLYNRRAFEDLVYPIWEMGKRSNKFMSVMLIDIDWFKGINDKYGHDMGDKVLKKVAEE 483 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + R GGEEF + A +A +LR + IN I +T+S Sbjct: 484 IKGQVRGSDITFRWGGEEFLVFLPNTRVHYAKQIAENLRVHLFTHDIN----KFIRVTVS 539 Query: 222 AGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS-DIENN 264 G+A +E I+ +I ++DQALY+AK GRN+ CF I+N Sbjct: 540 IGVAGTSPGEEDINVLIKQSDQALYLAKAKGRNKKWCFGRKIQNK 584 >gi|229014577|ref|ZP_04171693.1| GGDEF domain protein [Bacillus mycoides DSM 2048] gi|228746729|gb|EEL96616.1| GGDEF domain protein [Bacillus mycoides DSM 2048] Length = 343 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 18/230 (7%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKE 92 SIF + F N++ I + P Y IL +++ +V++ + ++ YI S S + + Sbjct: 118 SIFTKWIWF--NVYSLSILILPLY----ILFKDIYVVVLYLICCIVAAYITFVSASYVLQ 171 Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 + + + ID L+ L N F I S N+ L ++ DID+FK +ND Sbjct: 172 SNELFQTMKHYATIDALTNLGNVRQFDFEMNRHIGSKHMKNDSLCLLLIDIDHFKYVNDT 231 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GHP GD+V+ L L+ P V R GGEEFA + +R +E Sbjct: 232 YGHPAGDEVLKQLGRILLENAPFPNLVFRKGGEEFALLLPKKRVAFGNRIGEQIRLAVEK 291 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +G I IT+S G++E +K+ I AD ALY +K++GRN+V Sbjct: 292 HSFQLQNGEKIKITVSVGLSE--YKKSPEQFIQSADDALYYSKRNGRNKV 339 >gi|158521095|ref|YP_001528965.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3] gi|158509921|gb|ABW66888.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3] Length = 396 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/197 (35%), Positives = 102/197 (51%), Gaps = 14/197 (7%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNE 127 V I+++++++L YI+ K + + ++S +D L+ L N FI L S Sbjct: 198 VFITVSLTIML-YITIVTFKRWGVREDVYRKMSTVDGLTRLTNRRTFIERSEKELSSGQR 256 Query: 128 K----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + +S + DID+FK IND +GH GDKV+ ++ L VGR GGEEFA Sbjct: 257 RPSSHISCIMIDIDHFKAINDTYGHAAGDKVLVKIATILTEKARPTDEVGRYGGEEFAML 316 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRA 240 ++ A +A R I N++I I G I +T S G+A C + I I + A Sbjct: 317 LPATTLAGAVKVAERQRASIANAEI-IVDGNIIQVTASFGVAS-CPSDDIDNINELLKTA 374 Query: 241 DQALYVAKKSGRNRVVC 257 D ALY AK++GRNRVV Sbjct: 375 DVALYEAKRAGRNRVVA 391 >gi|163784009|ref|ZP_02178970.1| GGDEF domain protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880719|gb|EDP74262.1| GGDEF domain protein [Hydrogenivirga sp. 128-5-R1-1] Length = 275 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 113/227 (49%), Gaps = 17/227 (7%) Query: 44 FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103 F+ IFLF+ + GL + LS I I IS+++ Y+ S++KE + ++ Sbjct: 52 FLYGIFLFFTAVVHISGLVSLPYNPLSYFTILIIISIII-YVGNSVVKETLEKLLFLDKI 110 Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + D L+GL N I L + YN LSI+ DID FK+IND FGH GDK++ Sbjct: 111 ANQDILTGLHNRKKLIEILKNELIRARRYNRPLSILLLDIDDFKKINDKFGHNFGDKILQ 170 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + L + GR GGEEF ++++ A +A +R +I N +I Sbjct: 171 EFAKLLKMSLRNTDHAGRWGGEEFIIVLPETNKKNAVKVAEKIRNLIGNYFEDIYGKK-- 228 Query: 217 HITISAGIAE--RCHKEPISTIIYR----ADQALYVAKKSGRNRVVC 257 IT+S G+ E E I I++ AD+ALY AK+ G+N+V Sbjct: 229 -ITVSIGLTEFKDWKNESIDVIMHEIIEIADKALYKAKRDGKNQVAV 274 >gi|326793638|ref|YP_004311458.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326544402|gb|ADZ89622.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 384 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 16/196 (8%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122 +L+++ I++ L+L Y L +F N +++LS D L+ L N F + Sbjct: 186 ALIVVFISMLLILSYS----LIVIFKQRNTLNRLSTEDPLTKLYNRRQFNLHLCKLVDRY 241 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG--RLGGEEF 180 + L++V FD+D+FK NDN GH GDK + ++++L+ + + + R+GGEEF Sbjct: 242 NNSRSPLTLVVFDVDFFKMFNDNRGHIAGDKALTQIAERLIALNSETLGLDAYRVGGEEF 301 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI--AERCHKEPISTII 237 A G ++ LA D+RK IE +I + +S S IT+S G+ A + T+ Sbjct: 302 ACLYCGLDYSDSLALAEDIRKTIEKLKIPHETSDISNCITVSIGVVNANQFEHATSDTMY 361 Query: 238 YRADQALYVAKKSGRN 253 ADQALY AKK GRN Sbjct: 362 SAADQALYEAKKRGRN 377 >gi|319764559|ref|YP_004128496.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|330826775|ref|YP_004390078.1| diguanylate cyclase [Alicycliphilus denitrificans K601] gi|317119120|gb|ADV01609.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|329312147|gb|AEB86562.1| diguanylate cyclase [Alicycliphilus denitrificans K601] Length = 396 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 20/257 (7%) Query: 23 SPHT----FMIYFSIF--FSIFIATVIFIANIFLFYIGLTPFYG-LEYILVENLSLVIIS 75 +PH M+ +F F++ + + +A ++L +G + L + + L L ++ Sbjct: 137 APHETAVLVMVMLGVFSPFAVSLWVQLLVALLYLACVGALAWAAPLPEVRAQMLRLEVVL 196 Query: 76 ITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125 +L+ G Y +E F+ L+ D L+GL N F +G Sbjct: 197 ALSALVFGFAAYWREHQRREQFLYRGDAHWLAMRDALTGLYNRRMFNHHIGQLVAQAQRE 256 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184 + L+++ D+DYFK ND+ GH GD V+ ++ ++ G P+ V R+GGEEFA Sbjct: 257 GQPLALLLMDVDYFKSYNDSHGHQQGDVVLQQVAQVVLACIGRPLDLVARVGGEEFAVLL 316 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQA 243 GSS + A L L + + ++ P +T+S G A ++ T+ RAD+ Sbjct: 317 YGSSAEHAQALGQSLVAGVRQRALPHAASPVAQVVTVSVGGAMLSPQDQPRTLYARADRM 376 Query: 244 LYVAKKSGRNRVVCFSD 260 LY AK GR+R C++ Sbjct: 377 LYEAKNGGRDR-CCWAQ 392 >gi|294140899|ref|YP_003556877.1| sensory box/GGDEF family protein [Shewanella violacea DSS12] gi|293327368|dbj|BAJ02099.1| sensory box/GGDEF family protein [Shewanella violacea DSS12] Length = 273 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 7/156 (4%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + F L +++ ++ FD+D FK +ND +GHP+GDKV+ + Sbjct: 116 DNLTGLNNRNYFDGQLVEISQQYKRFGHTFCVLMFDLDKFKMVNDTYGHPIGDKVLQEFA 175 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + V + R GGEEF A + + A +AN +R+ I + + T Sbjct: 176 KKTKQVIREVDILARFGGEEFIALLPNTRLKAAKEVANRIRQRISQQIVLSQDHEPVTFT 235 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+AE + +II RAD ALY AK SGRNRV Sbjct: 236 VSIGVAEFSPHDDTESIIKRADDALYRAKNSGRNRV 271 >gi|89098814|ref|ZP_01171695.1| hypothetical protein B14911_05124 [Bacillus sp. NRRL B-14911] gi|89086490|gb|EAR65610.1| hypothetical protein B14911_05124 [Bacillus sp. NRRL B-14911] Length = 532 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 9/177 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140 +I +E+ + ++ +L+ D L+G+ N + FI G + +S++ FDIDYFK Sbjct: 350 NITQEVLLR-QKLEELAFKDGLTGIYNRTYFIEQSGRLLKEAEAAGGTMSVILFDIDYFK 408 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH GD+ + ++ + G R GGEEF G+ + AA A +R Sbjct: 409 NINDQYGHLQGDEALRHIARVSGSLLGGGSIFARYGGEEFVICLPGADLESAADQAEKIR 468 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IE + +G I +T S G AE + +++ AD ALY +K GRNRV C Sbjct: 469 AGIEEVFLPSETG-MISLTASFGAAEAAPGMTLERLLHNADTALYQSKNGGRNRVTC 524 >gi|332526563|ref|ZP_08402673.1| putative GGDEF domain signaling protein [Rubrivivax benzoatilyticus JA2] gi|332110829|gb|EGJ11006.1| putative GGDEF domain signaling protein [Rubrivivax benzoatilyticus JA2] Length = 562 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 +L + +++L+ D L+GL N AF + ++ DID+FK +ND Sbjct: 385 QLSQANEELARLAAQDALTGLANRRAFEQRAAEEEARCRRSGTGFGLLLLDIDHFKDVND 444 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKI 202 FGH GD+V+ ++ L V RLGGEEFA LG S + +A +R+ Sbjct: 445 RFGHATGDQVLQQIARLLESATRETDLVARLGGEEFAVLLPELGES-ADTLRVAEKIRQA 503 Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I+ + GP +T+S G A+ + P+ + RAD+ALY AK++GRNR V D+ Sbjct: 504 IQAAHF----GPVGEVTVSVGCAKGDGNDTPVQLALRRADEALYKAKQAGRNRCVAADDL 559 >gi|320181636|gb|EFW56551.1| Protein YaiC [Shigella boydii ATCC 9905] Length = 371 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P+++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNSQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|255022428|ref|ZP_05294414.1| ggdef domain protein [Listeria monocytogenes FSL J1-208] Length = 357 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 17/197 (8%) Query: 76 ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128 + I+L++G +S ++ K+LF Y + S L + LS + I+ + + + + Sbjct: 164 VLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDAGSRQ 223 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184 ++++ DIDYFK IND +GH GD ++ QL V+ G R GGEEF+ Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAVILKASTTDGSEAFRNGGEEFSIVL 279 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQA 243 L S +E +A +RK E I G + ITIS G++ S +++ AD+A Sbjct: 280 LDCSIEEGNKVAEQVRKETEEQDFVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEA 339 Query: 244 LYVAKKSGRNRVVCFSD 260 LY AK +GRNR VC +D Sbjct: 340 LYKAKLTGRNR-VCIAD 355 >gi|74316654|ref|YP_314394.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259] gi|74056149|gb|AAZ96589.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus denitrificans ATCC 25259] Length = 559 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 12/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 + L ++ R+ L+ +D L+G+ N F IS LS++ FDID+FK +N Sbjct: 371 EALEVANRRLKALASVDSLTGISNRRHFVEQAKAEISRARRQGLPLSVIMFDIDFFKTVN 430 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH GD+ + L+ + RLGGEEF G +A A+ +R ++ Sbjct: 431 DRFGHEAGDQTLKALTSTVSGNLRAGDIFARLGGEEFILMLPGQGLGDAVQTADRVRALV 490 Query: 204 -ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E S+ + + IT+SAG+A E + ++ +AD+ALY AK GR+RV Sbjct: 491 AETSRTHY----PVPITLSAGVAGLAGSEDLDGLLRQADRALYAAKHQGRDRV 539 >gi|238785724|ref|ZP_04629698.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970] gi|238713364|gb|EEQ05402.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970] Length = 319 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 12/184 (6%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132 LLG ++ K L + + ++S D L+GL N H+ F S Y +++ Sbjct: 135 LLGLVTYRTAKRLAENREELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 193 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID FK IND FGH VGD I L+++L++ VGR GG+EF A ++ ++ Sbjct: 194 LLDIDNFKSINDTFGHAVGDDAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 253 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251 + +++ + N + PS+ + +SAGIA+ H + AD ALY+AK +G Sbjct: 254 REVLTRIQEKLAN--LVFEQAPSLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDNG 311 Query: 252 RNRV 255 RNR+ Sbjct: 312 RNRI 315 >gi|328473496|gb|EGF44342.1| GGDEF domain-containing protein [Listeria monocytogenes 220] Length = 215 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 13/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N F + ++N LS++ DIDYFK++ND +GH VG+ Sbjct: 42 LQQSTILDPLTGLTNFRHFEKAFEAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 101 Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 102 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 161 Query: 212 SGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA R + P + ++ ADQALY AK++GRN+V Sbjct: 162 ASGSV-ITISAGIANYDGRNYPNP-NELLNAADQALYNAKRNGRNQV 206 >gi|320334940|ref|YP_004171651.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] gi|319756229|gb|ADV67986.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] Length = 368 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 87/178 (48%), Gaps = 22/178 (12%) Query: 97 YNRISQLSR----------IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYF 139 Y+R S L R +D L+GL N AF SL E+ LSI+ DID+F Sbjct: 188 YSRQSSLERERDVLEQYAFVDALTGLHNRRAFEQSLAQEAERAQHNGQPLSIIALDIDHF 247 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K++ND FGH GD V+ L+ + V R GGEEF A A + Sbjct: 248 KRVNDTFGHDAGDHVLKDLARIVRREVRATDVVARWGGEEFILLLPTMDLPVAQACAERI 307 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 R+ ++ + S+GP +++S G+A E + RAD ALY AK++GRNRVV Sbjct: 308 RRAVDAHE--FSTGP---LSVSLGVATLLRGEDTGALFGRADAALYSAKRAGRNRVVT 360 >gi|254784885|ref|YP_003072313.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901] gi|237684770|gb|ACR12034.1| GGDEF domain protein [Teredinibacter turnerae T7901] Length = 439 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 9/217 (4%) Query: 51 FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK--ELFISYNRISQLSRIDC 108 +Y+ + F+ + +LV V + +S ++ +I K +L + +LS+ID Sbjct: 220 WYLVIGCFWFVALLLVSFQKYVTLRRQVSDSAQKLNEAITKARKLEAESAKYRELSQIDQ 279 Query: 109 LSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 L+ LN + ++ Y+ S ++ D+D+FKQINDN+GH GDKV+A + L Sbjct: 280 LTQTLNRRGLMQTIDRYDHAKSWFSTAVILLDVDHFKQINDNYGHNSGDKVLAQIGRILR 339 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 T VGR GGEEF ++ A +A +R II+ +I + +++S G Sbjct: 340 ENVRTQDDVGRWGGEEFILVCPKTTAAGATAIAEKIRAIIDYKTFSIEN--DFRVSVSVG 397 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I+ E + +RAD ALY AK SGRN VV ++ Sbjct: 398 ISIGHRSEHFEDVYHRADHALYEAKNSGRNCVVVAAE 434 >gi|320335019|ref|YP_004171730.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] gi|319756308|gb|ADV68065.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] Length = 359 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 15/163 (9%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 L+ +D L+GL N ++ LG + + LS++ FD+D+FK++ND FGH VGD V+ Sbjct: 203 LANLDALTGLPNRRQLLTWLGEHVPVQTDAPLSVILFDLDHFKRVNDTFGHDVGDDVLRA 262 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP--- 214 + + GR GGEEF G+ A +A +R ++SGP Sbjct: 263 TAAVMGGALRRETPFGRWGGEEFLVVLPGADVAHAQAVAERVRS-------ALASGPMTR 315 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +T S G+ + E + ++ RAD ALY AK +GR++V+ Sbjct: 316 AGRVTASFGVTQAQPGESVEGVLKRADDALYAAKHAGRDQVLA 358 >gi|32473997|ref|NP_866991.1| response regulatory protein [Rhodopirellula baltica SH 1] gi|32444534|emb|CAD74533.1| probable response regulatory protein [Rhodopirellula baltica SH 1] Length = 824 Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 9/157 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N + F S L N S++ DID+FKQ+ND GHP GD+ + + Sbjct: 514 DPLTGIANRAEFDSRLVRATADSKKNNSTFSLIICDIDHFKQVNDVHGHPAGDEALVQFA 573 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF A+ S AA A +RK IE + ++ +G S +T Sbjct: 574 RVLESHARDEDLVARYGGEEFVFLAINSDNATAARRAEQIRKAIEVTPLDGLNGES--VT 631 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+ E + TI+ R+D+AL AK++GRNRVV Sbjct: 632 VSFGVTEYQTGDAAETILARSDRALLQAKENGRNRVV 668 >gi|16801341|ref|NP_471609.1| hypothetical protein lin2277 [Listeria innocua Clip11262] gi|16414789|emb|CAC97505.1| lin2277 [Listeria innocua Clip11262] Length = 357 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 104/199 (52%), Gaps = 21/199 (10%) Query: 76 ITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK 128 ++I+L++G +S ++K + S + + Q S +D L+ L N F + + + + Sbjct: 164 VSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDAGSRQ 223 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEFAA 182 ++++ DIDYFK IND +GH GD ++ QL ++ G+ F R GGEEF+ Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAIILKRNTSDGSEAF--RNGGEEFSI 277 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-AD 241 L ++ A +RK E I SG + ITIS G++ S +++ AD Sbjct: 278 VLLDCPIEKGNFFAEQVRKETEEHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKSAD 337 Query: 242 QALYVAKKSGRNRVVCFSD 260 +ALY AK +GRNR VC +D Sbjct: 338 EALYKAKLTGRNR-VCIAD 355 >gi|186681071|ref|YP_001864267.1| diguanylate cyclase [Nostoc punctiforme PCC 73102] gi|186463523|gb|ACC79324.1| diguanylate cyclase [Nostoc punctiforme PCC 73102] Length = 340 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 13/201 (6%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118 L N L++ +T+ G ++L + + +S ++ D L+ L N A Sbjct: 128 LTANHGLILAQLTV----GLRKAQKYRDLIRTNDMLSAIALADSLTELNNRRALEWDLPR 183 Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 I + LS++ D+D+FK++ND GH VGD+++ L +L R GG Sbjct: 184 QIQRARTQKTSLSLIILDVDHFKKVNDTHGHLVGDRILQILCQRLRHNLRCQDTAFRYGG 243 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPIST 235 EEF ++++EA ++A L +++ + +S+ +I+ITIS G A + E + Sbjct: 244 EEFVILLANTTDEEALLVARRLNRVVSDEPFALSNKLTINITISLGTASLQADDDEQGES 303 Query: 236 IIYRADQALYVAKKSGRNRVV 256 ++ RADQ L AK +GRNRV+ Sbjct: 304 LLNRADQCLLQAKNAGRNRVI 324 >gi|254000471|ref|YP_003052534.1| diguanylate cyclase [Methylovorus sp. SIP3-4] gi|313202431|ref|YP_004041089.1| diguanylate cyclase [Methylovorus sp. MP688] gi|253987150|gb|ACT52007.1| diguanylate cyclase [Methylovorus sp. SIP3-4] gi|312441747|gb|ADQ85853.1| diguanylate cyclase [Methylovorus sp. MP688] Length = 622 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 91/179 (50%), Gaps = 14/179 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140 ++ EL + IS+++ D L+G LN ++ + LSI DID+FK Sbjct: 420 KLIDELTRRLDHISEVAHEDYLTGTLNRRGMDEAMEREFARADRHGTPLSIAMMDIDHFK 479 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+NDN GH GD+ + L + + R GGEEF L S++Q+ A+ D+ Sbjct: 480 QLNDNLGHATGDQALIHLVRIVKYSLRNTDVLARYGGEEFIII-LPSTKQDEAM---DIM 535 Query: 201 KIIENSQIN---ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 K ++ + + IT SAG+AER E TI+ RAD ALY AK SGRN+V+ Sbjct: 536 KRVQRDLTKNFFMHRNERVLITFSAGVAERLPGEGPETIVPRADAALYKAKHSGRNQVI 594 >gi|225867397|ref|YP_002752775.1| GGDEF domain protein [Bacillus cereus 03BB102] gi|225788193|gb|ACO28410.1| diguanylate cyclase (GGDEF) domain protein [Bacillus cereus 03BB102] Length = 351 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 S+F + F N++ +I P + IL +++S+V + + S + YI+ +L+ Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLF----ILFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F I + N L ++ DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L V P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRTA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|224372148|ref|YP_002606520.1| diguanylate cyclase (GGDEF) domain protein [Nautilia profundicola AmH] gi|223588436|gb|ACM92172.1| diguanylate cyclase (GGDEF) domain protein [Nautilia profundicola AmH] Length = 558 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 9/196 (4%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISS 121 L +++ I++ + + IL+EL S + + S D L+ L N S + Sbjct: 357 LEMLLNKISVPVAISLEKELILRELEDSNKMLYEKSISDPLTKLYNREYMKEFLSQKVQE 416 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 Y LS+ DID+FK+IND +GH +GD V+ L++ L F V R GGEE Sbjct: 417 AKRYKFPLSVAMIDIDFFKKINDTYGHLIGDCVLKELAELLKDNFRGSDIVSRYGGEEIF 476 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 + A + RK +E + I ITISAG++E E I +I +AD Sbjct: 477 IIMPFTDGINACKKLENFRKFVEEH--DFCEKKRIKITISAGVSEFDFGEDIEDLILKAD 534 Query: 242 QALYVAKKSGRNRVVC 257 + +Y AKK GRN+VVC Sbjct: 535 RKVYFAKKQGRNKVVC 550 >gi|157963009|ref|YP_001503043.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157848009|gb|ABV88508.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 627 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S L+ D L+ L N + Y + LS + FD DYFK IND +GH VGD Sbjct: 462 LSALALTDDLTQLPNRRYIYTQAQDYFESAIKNQQALSCISFDADYFKLINDRYGHEVGD 521 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + L+D V GT R+GGEEF + + +A +A L + N+ + S Sbjct: 522 ETLKLLADTCRAVLGTQYEAARVGGEEFLILLPHTDKAQALKVAQHLVNQVRNA--DFSP 579 Query: 213 GPS-IHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 P ITISAG++ + +S ++ RAD+ALY+AKK GR++V Sbjct: 580 FPEGFSITISAGVSSLSETDDKLSQLLKRADEALYLAKKQGRDQV 624 >gi|320354451|ref|YP_004195790.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032] gi|320122953|gb|ADW18499.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032] Length = 528 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 111/227 (48%), Gaps = 20/227 (8%) Query: 51 FYIGLTPFYGLEYILVE-NLSLVIISITIS-----LLLGYISGSILKELFISYNRI-SQL 103 F I + P + IL E NL L +I+++ L+ + L E NR+ L Sbjct: 293 FGIKINPVKSVAEILQEANLRLSLINLSYEEMNRELIKSKMELERLTEELSQKNRLLENL 352 Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + ID L+ + NH F L S + LS++ DID+FK+ ND +GH GD ++ Sbjct: 353 ANIDGLTEVSNHRFFQHFLDSEINRAIRNDRPLSLLLADIDHFKKFNDTYGHQTGDFILK 412 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PS 215 V + R GGEEFA +S++EA I+A LRK +E ++ G S Sbjct: 413 EFCRITKEVIREYDLLARYGGEEFAYVLPETSQEEAQIVAEKLRKTVE--EVTFDDGRQS 470 Query: 216 IHITISAGIA-ERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259 H+TIS G+A R E S I AD+ALY AK GRNR+ ++ Sbjct: 471 YHVTISIGVATARPGVEDFSKNDFIGAADEALYEAKNGGRNRIALYT 517 >gi|224824914|ref|ZP_03698020.1| response regulator receiver modulated diguanylate cyclase [Lutiella nitroferrum 2002] gi|224602585|gb|EEG08762.1| response regulator receiver modulated diguanylate cyclase [Lutiella nitroferrum 2002] Length = 408 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 82/160 (51%), Gaps = 4/160 (2%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 + L+ D L+GL N + I DID+FKQIND FGH VGD VI L+ Sbjct: 253 LEHLAHADPLTGLSNRRHLFEQVQKIRGAYGIAIIDIDHFKQINDGFGHDVGDVVIQHLA 312 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D+L F V R GGEEF + A +LR+ +E +++ G ++ T Sbjct: 313 DRLREHFPR-AIVARFGGEEFVVLMKRDAAHPLAQRLEELRQEVEREEVDSHKG-TVRYT 370 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 IS G+A + I ++ AD+ LY AK++GRNR VC S Sbjct: 371 ISIGMAAATAPD-IRELLRLADERLYKAKQNGRNR-VCAS 408 >gi|222086325|ref|YP_002544858.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221723773|gb|ACM26929.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 415 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 96/177 (54%), Gaps = 11/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 E + ++ L+ D L+GL N F ++ S+ DID+FK++ND Sbjct: 233 ETLLQLKQLRVLAASDYLTGLYNRRYFYDQGPRIVNECLRRQRPSSVAILDIDHFKKLND 292 Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH +GD+V+ ++D+L +F G+ + RLGGEEFA + + A + +D+R + Sbjct: 293 TYGHEIGDQVLKAVADRLRSLFEGSDSLLSRLGGEEFAILFTETDSRAATAICDDVRVSL 352 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 N ++N + + +T+S G+AE E + ADQ LY+AK +GRN+V +SD Sbjct: 353 SNLKVN-ADDEELSVTVSIGVAEIAGYEAFENYLNAADQFLYMAKHNGRNQV--YSD 406 >gi|187921653|ref|YP_001890685.1| PAS/PAC sensor-containing diguanylate cyclase [Burkholderia phytofirmans PsJN] gi|187720091|gb|ACD21314.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phytofirmans PsJN] Length = 312 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 11/202 (5%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 L+ +V + +TIS + ++S + +E + ++ + + D L+G+ N F + L Sbjct: 113 LMREREVVAVCVTISDVT-HVS-IVQREREEAVAKLQEYADRDGLTGIANRRFFEARLRD 170 Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 Y +S++ FD+D+FK+IND FGH VGD V+ ++ ++ V GR GG Sbjct: 171 EYTRWQRYGGDMSVLLFDLDHFKKINDQFGHGVGDTVLRVMAQRVAEVVRAQDTFGRFGG 230 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTI 236 EEFA + ++A +A +R I ++ + + G + +T S G A R + Sbjct: 231 EEFALLLPCTPLEDAMRVAEKIRCTIADTPVEV-QGTCVPVTASVGGASARVGVPSYDVL 289 Query: 237 IYRADQALYVAKKSGRNRVVCF 258 I AD ALY AK+ GRNR V F Sbjct: 290 INEADAALYSAKRQGRNRSVAF 311 >gi|187730193|ref|YP_001879091.1| diguanylate cyclase AdrA [Shigella boydii CDC 3083-94] gi|187427185|gb|ACD06459.1| MASE2 domain/diguanylate cyclase [Shigella boydii CDC 3083-94] Length = 366 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 171 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 290 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362 >gi|152987658|ref|YP_001350884.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150962816|gb|ABR84841.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 542 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 10/160 (6%) Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L LS DID+FKQ+ND FGHP+GD+VI L+ Sbjct: 380 DSLTGLYNHTHTLQLLEDARLRARRDGRPLSFAMLDIDHFKQVNDRFGHPMGDRVIKGLA 439 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L +GR GGEEFA + A ++ +++R+ ++I+ + P+ + Sbjct: 440 LFLKQRLRKTDHIGRYGGEEFAVVLPDTDLDAARLVLDEIRQRF--AEIHYPAQPADLRC 497 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 T S GIAE I ++ +AD+ALY AK GRNR+ + Sbjct: 498 TFSCGIAELTPDLDIKSMAKQADEALYRAKHGGRNRIEVY 537 >gi|329889382|ref|ZP_08267725.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] gi|328844683|gb|EGF94247.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] Length = 352 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 102/220 (46%), Gaps = 38/220 (17%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNR--------ISQLSR---IDCLSGLLN 114 ++L +++ S++ + S L+ S NR + Q+ R D L+ L N Sbjct: 132 TDSLGVIVSSLSDATRRIRRHTSALERRLESSNREVVKLRDHLEQVRRDAMTDALTNLAN 191 Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 AF L S + + DID+FK+ ND +GH GD+V+ +++ L + Sbjct: 192 RKAFDEQLQRMCDEAESDGTPIGLALIDIDHFKRFNDTWGHQTGDQVLRYVASVLARIAR 251 Query: 168 TPMFVGRLGGEEFA-----------AAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 TP R GGEEFA AAL ++ +E I + LR+ N + Sbjct: 252 TPRVAARYGGEEFAVIFPRETAGAVEAALNAAREE--IASRSLRRRSTNDDLGA------ 303 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +TIS G A R E S + RAD+ALY +K++GRNRV Sbjct: 304 -VTISVGFALRHSGEAASHFLGRADEALYASKRTGRNRVT 342 >gi|253690643|ref|YP_003019833.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757221|gb|ACT15297.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 480 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 103/214 (48%), Gaps = 31/214 (14%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLL 113 + L Y+ N S++II++ I+ FI+ NR I +S D L+G+L Sbjct: 276 FELSYLFQINTSVIIITVLIA------------SFFINKNRKNIKRIELISNHDALTGML 323 Query: 114 NHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 N + S+ N+ +S++ DID+FK++ND +GH VGD VI S L Sbjct: 324 NRRSLNQHMMNIINSTRDGDNKIMSLLVLDIDHFKKVNDTYGHAVGDNVIREFSTTLKQY 383 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 + R GGEEF G S + +A +R IIE + + IS G + T S G++ Sbjct: 384 TRPQDLLCRWGGEEFLIIIQGLSVNDCLDIAERIRSIIEGAPLAISDGHIVRCTTSIGVS 443 Query: 226 ----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ER E AD+ LY+AK+ GRNRV Sbjct: 444 FFQLERI--EDFHEAFKEADELLYMAKEQGRNRV 475 >gi|268679692|ref|YP_003304123.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268617723|gb|ACZ12088.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 458 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 109/210 (51%), Gaps = 17/210 (8%) Query: 62 EYILVENLSLVIISITISLLLGYIS-GSILKELFI---SYN-RISQLSRIDCLSGLLNHS 116 +Y+ ++ ++ + + L+LG+I+ G I ++ YN + LS D L+ + N Sbjct: 253 KYVSIKAQTVHDYDLIVKLILGFIALGMIFLWRYLELRKYNLELLYLSETDLLTKIYNRM 312 Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 L + ++ L ++ DID+FK++ND FGHP+GD+V+ ++ + + Sbjct: 313 KIEKLLLTLTQEAHQKRTFLCVLLLDIDHFKKVNDTFGHPIGDQVLIQMATLIKISLREG 372 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 F+GR GGEEF +S +E + L++ ++ ++ H T+S G+A Sbjct: 373 DFLGRWGGEEFLMICPNTSLEEGFKIGERLQECVKKAEFPTQQ----HHTVSIGVAMLHE 428 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +E +I RAD ALY AKKSGRN VC S Sbjct: 429 EESAYDVIVRADNALYHAKKSGRNN-VCVS 457 >gi|229170119|ref|ZP_04297808.1| GGDEF domain protein [Bacillus cereus AH621] gi|228613350|gb|EEK70486.1| GGDEF domain protein [Bacillus cereus AH621] Length = 343 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 18/230 (7%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKE 92 SIF + F N++ I + P Y IL +++ +V++ + ++ YI S S + + Sbjct: 118 SIFTKWIWF--NVYSLSILILPLY----ILFKDIYVVVLYLICCIIAAYITFVSASYILQ 171 Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 + + + ID L+ L N F I S N+ L ++ DID+FK +ND Sbjct: 172 SNELFQTMKHYATIDALTNLGNVRQFDFEMNRHIDSKHMKNDSLCLLLIDIDHFKYVNDT 231 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GHP GD+V+ L L+ P V R GGEEFA + +R +E Sbjct: 232 YGHPAGDEVLKQLGRILLENAPFPNLVFRKGGEEFALLLPKKRVAFGTRIGEQIRLAVEK 291 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +G I IT+S G++E +K+ I AD ALY +K++GRN+V Sbjct: 292 HLFQLQNGGKIKITVSVGLSE--YKKSPEQFIQSADDALYYSKRNGRNKV 339 >gi|215485467|ref|YP_002327898.1| diguanylate cyclase AdrA [Escherichia coli O127:H6 str. E2348/69] gi|215263539|emb|CAS07869.1| predicted diguanylate cyclase [Escherichia coli O127:H6 str. E2348/69] Length = 371 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNAPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|327480824|gb|AEA84134.1| sensory box/GGDEF family protein [Pseudomonas stutzeri DSM 4166] Length = 320 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 105/232 (45%), Gaps = 33/232 (14%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN---------- 98 L + P GLE + +N +L L L I+GSI + I Y+ Sbjct: 94 LLRFKNYQPITGLEDFMYQNTTL--------LPLKGINGSIDQVCLIIYDVTDVAINRRQ 145 Query: 99 ------RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145 + +LS D L+GL N + L Y+ + ++V FDID+FK IND Sbjct: 146 LQAANAELQRLSSTDRLTGLYNRGHWEEMLRLDYARHRRYDSQAALVMFDIDHFKSINDT 205 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH VGD VI +++ + GR GGEEF + +Q A A LR +E+ Sbjct: 206 YGHQVGDAVIQQVAELIRENLRDSDVAGRYGGEEFVVLLPDTDKQGALTFAERLRHAVES 265 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ I TIS G+A+ + +I AD ALY +K +GRNRV Sbjct: 266 HEVQ-HEQHRIRFTISLGVADLSVPSSSHAQLIEWADSALYASKAAGRNRVT 316 >gi|304407276|ref|ZP_07388929.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] gi|304343717|gb|EFM09558.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] Length = 440 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 101/180 (56%), Gaps = 11/180 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYN------EKLSIVFFDIDYFKQI 142 L+ + S + + QLS D L+G+ N + +L +N + LS++ FDIDYFK Sbjct: 252 LRTMLDSNHVLKQLSSRDGLTGIANRRCYDETLEREWNRLAIASKPLSLILFDIDYFKPF 311 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GDK + +++ L P R GGEEFA S ++A +A +++ Sbjct: 312 NDWYGHQAGDKCLQQVANLLQEHASEPHQLASRYGGEEFAILLSDQSIEQAMQIAESIQQ 371 Query: 202 -IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +++ S + S S ++T+S GI+ K P S ++++ADQALY+AK++GRN+V + Sbjct: 372 ALVKLSIPHSQSEVSDYVTVSVGISTVTATDKVPSSNLMHQADQALYLAKRNGRNQVAVY 431 >gi|316935058|ref|YP_004110040.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315602772|gb|ADU45307.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 284 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 106/193 (54%), Gaps = 15/193 (7%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126 +S T+S + Y S ++++L + + ++SR D L+GLLN F + + Sbjct: 62 VSTTLSGAMAYRSARLMQQLTSTRAELVRMSRTDTLTGLLNRRGFDEAAATLLGRASFTG 121 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAA 184 + + + D+D FK IND++GH +GD+V+A + ++ F P M + R GGEEFA Sbjct: 122 QPVVALMCDLDRFKAINDHYGHTIGDRVLAEIGG-ILRDFAAPRGMLIARHGGEEFAGLI 180 Query: 185 LGSSEQEAAILANDL-RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 +G S+++A A +L R+ + G + +T+S G+A + +S+++ RAD A Sbjct: 181 VGVSDEQANDYALELCRRCATEVACD---GRRVAVTMSFGLATYGGGD-LSSLMRRADLA 236 Query: 244 LYVAKKSGRNRVV 256 LY AK GRN VV Sbjct: 237 LYRAKDLGRNCVV 249 >gi|307299905|ref|ZP_07579690.1| diguanylate cyclase [Sinorhizobium meliloti BL225C] gi|306904794|gb|EFN35377.1| diguanylate cyclase [Sinorhizobium meliloti BL225C] Length = 402 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 99/195 (50%), Gaps = 17/195 (8%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 +++I+ +++L G ++KE+ + R S S ID LSGL N F S + L Sbjct: 196 AMLIVGTGVAML-----GVMVKEV-VDEARAS--SEIDALSGLCNRRGFSSRVAPLLRDL 247 Query: 130 S------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 S ++ DID FK +ND FGH GD+VI S L V GR+GGEEFA Sbjct: 248 SDHDVGTLILADIDRFKLVNDTFGHHTGDEVIREFSHILADVVPHRAVAGRVGGEEFAIF 307 Query: 184 ALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 +A ++AN +R + +IN + G + +T S G++ E + + RAD Sbjct: 308 LPRVGLADARVVANGIRSELAVKRINGLPEG--VAVTASFGVSAVAAGELLDAAMRRADN 365 Query: 243 ALYVAKKSGRNRVVC 257 +LY AK GRNRV C Sbjct: 366 SLYAAKAGGRNRVEC 380 >gi|218548907|ref|YP_002382698.1| membrane-associated diguanylate cyclase [Escherichia fergusonii ATCC 35469] gi|218356448|emb|CAQ89071.1| putative membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia fergusonii ATCC 35469] gi|324113268|gb|EGC07243.1| GGDEF domain-containing protein [Escherichia fergusonii B253] Length = 477 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 10/166 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++Q + D L+ + + S +L + ++++ DIDYFK IND+FGH GDK Sbjct: 302 KQVAQRADFDFLTQVYSRSGLYEALKKTELRGTQHITVMLLDIDYFKSINDSFGHECGDK 361 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V++ + + + G V R+GGEEFA + QE +LA +RK + + Sbjct: 362 VLSVFAKHVQKIVGNQGLVARMGGEEFAVVVPSLNAQEGLLLAEKIRKAVALHPFDWQQ- 420 Query: 214 PSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 ++++T+S GI + E ++ AD+ LY +KK GRNR Sbjct: 421 KTLYLTVSIGIGSGATRFETLTEVFDKLMVEADECLYRSKKEGRNR 466 >gi|193065198|ref|ZP_03046271.1| MASE2 domain/diguanylate cyclase [Escherichia coli E22] gi|192927172|gb|EDV81793.1| MASE2 domain/diguanylate cyclase [Escherichia coli E22] Length = 371 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTP-AESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|323700644|ref|ZP_08112556.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio sp. ND132] gi|323460576|gb|EGB16441.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio desulfuricans ND132] Length = 654 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 93/165 (56%), Gaps = 8/165 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +++ D L+G N AF ++ +N L+++ D+D+FK++ND+ GH +G Sbjct: 489 RLERMATRDQLTGAYNRHAFFQRARHELARARRFNRPLAVLMCDLDHFKEVNDSHGHAIG 548 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ + + R+GGEEFAA + + + A +A +R + + ++ Sbjct: 549 DEVLRTFALRCRADSRKTDVFARMGGEEFAALLVETDAERAVEVAERIRAMTASKPVSTE 608 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + +T+S G+A ++ I+ ++ RAD+ALY AK+SGRN VV Sbjct: 609 VG-DMAVTVSIGVAALNAEDSINELLKRADEALYKAKESGRNSVV 652 >gi|302559817|ref|ZP_07312159.1| GGDEF family protein [Streptomyces griseoflavus Tu4000] gi|302477435|gb|EFL40528.1| GGDEF family protein [Streptomyces griseoflavus Tu4000] Length = 209 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 14/156 (8%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 + +R D L+GL AF N +V D+D FKQ+ND GH GD ++A + Sbjct: 34 RTARRDPLTGLWTRDAFTRQASRLLRNPHAVVVLADVDRFKQVNDTHGHAAGDVLLAATA 93 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAAL---GSSEQEAAILANDLRKIIENSQINISSGPSI 216 +L G VGRLGG+EFAA + G++ + A+LA L + E + P + Sbjct: 94 SRLAHAVGRSGVVGRLGGDEFAAVLVDRDGTAADQLAVLARILARPTETA-------PEV 146 Query: 217 HITISAGIAERCH--KEPISTIIYRADQALYVAKKS 250 H ++S G R E +S ++ RAD+A+Y AK++ Sbjct: 147 HTSVSLGWVRRADHPDEDLSALLKRADEAMYAAKRT 182 >gi|270263681|ref|ZP_06191950.1| diguanylate cyclase [Serratia odorifera 4Rx13] gi|270042565|gb|EFA15660.1| diguanylate cyclase [Serratia odorifera 4Rx13] Length = 482 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 9/178 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 R+ + D L+G+L SA G E +S++ DID+FK IND GH V Sbjct: 299 RRLEHSANHDFLTGVLARSALTRKAGELLEHKYKSKEAVSLLLIDIDHFKLINDTHGHEV 358 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ +A + + GRLGGE+FA + + LA LR++++ + + Sbjct: 359 GDQALATFAHIVRRELRHDQLFGRLGGEDFAIMLPRALAAQGVALAEHLRQLVQKTDLYP 418 Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 + +TIS G+A E ++ ++ AD ALY AK GRNRV F+ + N+ Sbjct: 419 GGKTPLKVTISVGVASLAMNEVKSLAQLMNMADIALYRAKSQGRNRVESFNAVSGNSV 476 >gi|119505319|ref|ZP_01627393.1| Response regulator [marine gamma proteobacterium HTCC2080] gi|119458774|gb|EAW39875.1| Response regulator [marine gamma proteobacterium HTCC2080] Length = 365 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 89/171 (52%), Gaps = 11/171 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL + ++ L+ D L+ L+N L Y +LS++ DID+FK +ND Sbjct: 193 ELKRANEKLEYLASTDPLTELVNRRRLDEVLEQEFERTSRYQGELSLILLDIDHFKAVND 252 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH VGD+VIA + + + GR GGEEF A +S A A LR IE Sbjct: 253 TRGHQVGDEVIAGVGNIAKQMSRKSDTAGRWGGEEFLIVAPQTSCDNAVAFAEKLRLSIE 312 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 N++ SSG + ++ S G+A E I ++ RAD+ALY AK +GRNRV Sbjct: 313 NTE--FSSG--VRVSASFGVASLETGETIQLVLKRADEALYRAKHNGRNRV 359 >gi|325497342|gb|EGC95201.1| membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia fergusonii ECD227] Length = 477 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 10/166 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++Q + D L+ + + S +L + ++++ DIDYFK IND+FGH GDK Sbjct: 302 KQVAQRADFDFLTQVYSRSGLYEALKKTELRGTQHITVMLLDIDYFKSINDSFGHECGDK 361 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V++ + + + G V R+GGEEFA + QE +LA +RK + + Sbjct: 362 VLSVFAKHVQKIVGNQGLVARMGGEEFAVVVPSLNAQEGLLLAEKIRKAVALHPFDWQQ- 420 Query: 214 PSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 ++++T+S GI + E ++ AD+ LY +KK GRNR Sbjct: 421 KTLYLTVSIGIGSGATRFETLTEVFDKLMVEADECLYRSKKEGRNR 466 >gi|313622803|gb|EFR93134.1| ggdef domain-containing protein [Listeria innocua FSL J1-023] Length = 357 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 104/199 (52%), Gaps = 21/199 (10%) Query: 76 ITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK 128 ++I+L++G +S ++K + S + + Q S +D L+ L N F + + + + Sbjct: 164 VSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDAGSRQ 223 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEFAA 182 ++++ DIDYFK IND +GH GD ++ QL ++ G+ F R GGEEF+ Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAIILKRNTSDGSEAF--RNGGEEFSI 277 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-AD 241 L ++ A +RK E I SG + ITIS G++ S +++ AD Sbjct: 278 VLLDCPIEKGNFFAEQVRKETEEHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKSAD 337 Query: 242 QALYVAKKSGRNRVVCFSD 260 +ALY AK +GRNR VC +D Sbjct: 338 EALYKAKLTGRNR-VCIAD 355 >gi|82542876|ref|YP_406823.1| diguanylate cyclase AdrA [Shigella boydii Sb227] gi|157157429|ref|YP_001461563.1| diguanylate cyclase AdrA [Escherichia coli E24377A] gi|157159904|ref|YP_001457222.1| diguanylate cyclase AdrA [Escherichia coli HS] gi|218552948|ref|YP_002385861.1| diguanylate cyclase AdrA [Escherichia coli IAI1] gi|218693846|ref|YP_002401513.1| diguanylate cyclase AdrA [Escherichia coli 55989] gi|256020354|ref|ZP_05434219.1| diguanylate cyclase AdrA [Shigella sp. D9] gi|260842585|ref|YP_003220363.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009] gi|260853607|ref|YP_003227498.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368] gi|260866546|ref|YP_003232948.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128] gi|293418452|ref|ZP_06660887.1| adrA [Escherichia coli B088] gi|300820379|ref|ZP_07100531.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7] gi|301330763|ref|ZP_07223361.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] gi|309794893|ref|ZP_07689314.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] gi|331666732|ref|ZP_08367606.1| protein AdrA [Escherichia coli TA271] gi|331676051|ref|ZP_08376763.1| protein AdrA [Escherichia coli H591] gi|332281529|ref|ZP_08393942.1| diguanylate cyclase AdrA [Shigella sp. D9] gi|81244287|gb|ABB64995.1| conserved hypothetical protein [Shigella boydii Sb227] gi|157065584|gb|ABV04839.1| MASE2 domain/diguanylate cyclase [Escherichia coli HS] gi|157079459|gb|ABV19167.1| MASE2 domain/diguanylate cyclase [Escherichia coli E24377A] gi|218350578|emb|CAU96268.1| putative diguanylate cyclase [Escherichia coli 55989] gi|218359716|emb|CAQ97257.1| putative diguanylate cyclase [Escherichia coli IAI1] gi|257752256|dbj|BAI23758.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368] gi|257757732|dbj|BAI29229.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009] gi|257762902|dbj|BAI34397.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128] gi|291324980|gb|EFE64395.1| adrA [Escherichia coli B088] gi|300527164|gb|EFK48233.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7] gi|300843276|gb|EFK71036.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] gi|308121546|gb|EFO58808.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] gi|320173800|gb|EFW48983.1| Protein YaiC [Shigella dysenteriae CDC 74-1112] gi|320187593|gb|EFW62276.1| Protein YaiC [Shigella flexneri CDC 796-83] gi|320201627|gb|EFW76203.1| Protein YaiC [Escherichia coli EC4100B] gi|323160509|gb|EFZ46457.1| diguanylate cyclase domain protein [Escherichia coli E128010] gi|323170464|gb|EFZ56114.1| diguanylate cyclase domain protein [Escherichia coli LT-68] gi|323178353|gb|EFZ63931.1| diguanylate cyclase domain protein [Escherichia coli 1180] gi|323184790|gb|EFZ70161.1| diguanylate cyclase domain protein [Escherichia coli 1357] gi|323945285|gb|EGB41341.1| diguanylate cyclase domain-containing protein [Escherichia coli H120] gi|331065956|gb|EGI37840.1| protein AdrA [Escherichia coli TA271] gi|331076109|gb|EGI47391.1| protein AdrA [Escherichia coli H591] gi|332103881|gb|EGJ07227.1| diguanylate cyclase AdrA [Shigella sp. D9] Length = 371 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|167623887|ref|YP_001674181.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167353909|gb|ABZ76522.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 350 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 88/161 (54%), Gaps = 10/161 (6%) Query: 107 DCLSGLLNHSAF----ISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N AF IS + S+N S++ DID+FK+ ND GH VGDKV+A+++ Sbjct: 182 DQLTSVNNRRAFDKEVISHIDSFNHSNFDSSLLVVDIDHFKRFNDIHGHLVGDKVLAYVA 241 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG---PSI 216 L FV R GGEEF ++++EA I+A +LR+ I + I P Sbjct: 242 QALKNGVKGDDFVARYGGEEFVILLPNTTQEEANIVAENLRQKIAERNLTIGKDKKLPLG 301 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +IT+S G+A + + RAD+ALY AK SGRN VV Sbjct: 302 NITVSVGVASLKAADDKDSYFIRADEALYRAKSSGRNCVVS 342 >gi|163759691|ref|ZP_02166776.1| putative GGDEF sensory box protein [Hoeflea phototrophica DFL-43] gi|162283288|gb|EDQ33574.1| putative GGDEF sensory box protein [Hoeflea phototrophica DFL-43] Length = 356 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 98/182 (53%), Gaps = 16/182 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVFF-----DIDYFKQIN 143 ++++ + + +++ D L+ L N AF +L + Y +K + ++ D+D+FK+ N Sbjct: 163 MEQVKLELDEYKRIANTDPLTRLANRRAFDETLSNLYIDKRAAMYHALIVADVDHFKKFN 222 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKI 202 D +GHPVGD+V+ ++ + +F+ R GGEEFA G+S QEA I +A LR+ Sbjct: 223 DAYGHPVGDRVLGIVAAVMKSAVRKDVFLARTGGEEFAIILEGTS-QEATIGIAERLRRK 281 Query: 203 IE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IE N + + GP IT+S GI + +AD ALY AK +GRNR + Sbjct: 282 IETTPLKNQKTGLDYGP---ITLSLGICMASEASGAEELYNKADIALYAAKNTGRNRYMV 338 Query: 258 FS 259 + Sbjct: 339 YK 340 >gi|163943097|ref|YP_001647981.1| diguanylate cyclase [Bacillus weihenstephanensis KBAB4] gi|163865294|gb|ABY46353.1| diguanylate cyclase [Bacillus weihenstephanensis KBAB4] Length = 351 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 18/230 (7%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKE 92 SIF + F N++ I + P Y IL +++ +V++ + ++ YI S S + + Sbjct: 126 SIFTKWIWF--NVYSLSILILPLY----ILFKDIYVVVLYLICCIVAAYITFVSASYVLQ 179 Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 + + + ID L+ L N F I S N+ L ++ DID+FK +ND Sbjct: 180 SNELFQTMKHYATIDALTNLGNVRQFDFEMNRHIDSKHMKNDSLCLLLIDIDHFKYVNDT 239 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GHP GD+V+ L L+ P V R GGEEFA + +R +E Sbjct: 240 YGHPAGDEVLKQLGRILLENAPFPNLVFRKGGEEFALLLPKKRVAFGTRIGEQIRLAVEK 299 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +G I IT+S G++E +K+ I AD ALY +K++GRN+V Sbjct: 300 HSFQLLNGEKIKITVSVGLSE--YKKSPEQFIQSADDALYYSKRNGRNKV 347 >gi|283851585|ref|ZP_06368865.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] gi|283573119|gb|EFC21099.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] Length = 299 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 11/171 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL ++ + +LS D L+GL N + LG LS+V DID+FK +ND Sbjct: 130 ELALTNRELVRLSTTDMLTGLANRQRVDALLGQGLCAMAEAGTPLSLVMLDIDHFKLVND 189 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+V+ ++ +L VGR GGEEF G +A +LA LR+ + Sbjct: 190 RHGHQRGDEVLRAVAGRLRGAVPPEFAVGRWGGEEFLVLCPGMRLADAYLLAETLRQAVS 249 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +SGP +T S G+ E E ++ RADQALY AK GR+RV Sbjct: 250 APD---TSGPG-RLTCSFGVVEARSGEDGVGLLARADQALYAAKGLGRDRV 296 >gi|50122807|ref|YP_051974.1| hypothetical protein ECA3886 [Pectobacterium atrosepticum SCRI1043] gi|49613333|emb|CAG76784.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043] Length = 362 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 121/260 (46%), Gaps = 17/260 (6%) Query: 4 SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63 + D I +C K L S + +I F + T + I + TP Y Sbjct: 106 TFNDMAIIRICQNK-LPSIGEYAGKGTLTIIFPVLSPTDELLG-IRIRTTSETPSPSFFY 163 Query: 64 ILVENLS-LVIISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISS 121 L S +VI+SI +LL I GS+L L Y + ++R D L+G L AF + Sbjct: 164 TLTSPGSAIVILSI---VLLSAILGSLLSLLAKKYLIELPIIARYDDLTGYLRRDAFFLA 220 Query: 122 LGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 + ++ DIDYFKQ+ND+FGH VGD + F++D F GR Sbjct: 221 ANKAFSIANLTKRPVCVILIDIDYFKQVNDSFGHSVGDDALKFVADTFKKSFRREDIFGR 280 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233 +GG+EFA + +A + + R+ + + ++G I +T+S G+ E E + Sbjct: 281 IGGDEFAIVLPNTGLDDAYTIVDKARERVSETPCETTTG-KIRLTVSIGLVEYHATGEDL 339 Query: 234 STIIYRADQALYVAKKSGRN 253 ++ RAD LYVAKK+ RN Sbjct: 340 IEVMKRADDNLYVAKKT-RN 358 >gi|50086486|ref|YP_047996.1| hypothetical protein ACIAD3531 [Acinetobacter sp. ADP1] gi|49532462|emb|CAG70174.1| conserved hypothetical protein; putative conserved domain GGDEF [Acinetobacter sp. ADP1] Length = 393 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 9/174 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152 + I +LS++D L+ LLN + L +++ +++ D+D+FKQIND +GH VGD Sbjct: 221 DEIKRLSQLDFLTNLLNRRSIHQVLDHFHQTRAEKNYAVILLDLDHFKQINDQYGHHVGD 280 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ +S+ L +GR GGEEF +S A +A R I+ Q+NI++ Sbjct: 281 QVLIAISECLTQHVHPLNNIGRFGGEEFIILIPETSLSAAREIAECCRLAIQ--QLNIAT 338 Query: 213 GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD-IENN 264 +I ++ S G+A + S I+ +ADQALY AK GRN+V F + I+ N Sbjct: 339 TQDNIQLSASFGVAISSLQYEASQILTQADQALYFAKACGRNQVRTFPEYIQQN 392 >gi|213968072|ref|ZP_03396217.1| CHASE domain/sensory box-containing nucleotide cyclase [Pseudomonas syringae pv. tomato T1] gi|213927052|gb|EEB60602.1| CHASE domain/sensory box-containing nucleotide cyclase [Pseudomonas syringae pv. tomato T1] Length = 795 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 18/184 (9%) Query: 87 GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 GS+L F+S R+ + LS D L+G N F + + + LSI Sbjct: 610 GSVLWHGFVSDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 669 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ + Sbjct: 670 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGGQ 729 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A LA LR+ + N I G +T S GIA E I T++ RAD +Y AK++G Sbjct: 730 AYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAG 786 Query: 252 RNRV 255 R+RV Sbjct: 787 RDRV 790 >gi|307152144|ref|YP_003887528.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306982372|gb|ADN14253.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 360 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 96/177 (54%), Gaps = 11/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144 EL +Y ++ L ID L+ + N A Y+ SI+ D+DYFK IND Sbjct: 178 ELKAAYAQLELLVNIDPLTNVANRRALFKFGEQELYRAQRYHCSFSILLIDLDYFKHIND 237 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 ++GH +GD V+ + + + +GR GGEEF + +EA I+A +RK I Sbjct: 238 SYGHAMGDTVLKIVCNAINNSIRQIDLLGRFGGEEFVVILPKTKLKEAIIVAERIRKTI- 296 Query: 205 NSQINISSG-PSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259 S++++ G ++ IT S G+A K+ + +++RAD+ LY+AK+ GRN+VV + Sbjct: 297 -SELSLLVGQKTLKITASIGLATYNQKDATLDEVLHRADKGLYLAKERGRNQVVIYD 352 >gi|196045510|ref|ZP_03112741.1| GGDEF domain protein [Bacillus cereus 03BB108] gi|229187644|ref|ZP_04314781.1| GGDEF domain protein [Bacillus cereus BGSC 6E1] gi|196023717|gb|EDX62393.1| GGDEF domain protein [Bacillus cereus 03BB108] gi|228595798|gb|EEK53481.1| GGDEF domain protein [Bacillus cereus BGSC 6E1] Length = 351 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 S+F + F N++ +I P + IL +++S+V + + S + YI+ +L+ Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLF----ILFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F I + N L ++ DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L V P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|115524966|ref|YP_781877.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] gi|115518913|gb|ABJ06897.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] Length = 355 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 9/165 (5%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F ++ + E L+++ DID+FK ND +GH GD+V+ + Sbjct: 181 DPLTGLGNRKHFDRAVEDAVRRAYANGEPLALLMIDIDHFKIFNDTYGHLTGDQVLRLVG 240 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217 L + R GGEEFA ++ + A +A ++R+ + ++ S I Sbjct: 241 QALKQTITGQDIMARYGGEEFAVVLPNTTLRHAIGVAENIRRTVTAKELKKKSTGEILGR 300 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +T+S G++E E + ++I RAD LY AK+ GRNRVVC +D E Sbjct: 301 VTVSIGVSELKLDEDMDSMIERADSCLYTAKRIGRNRVVCETDRE 345 >gi|307721799|ref|YP_003892939.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306979892|gb|ADN09927.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 338 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 6/132 (4%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 YN S+V FDID+FK++NDN+GH +GDKV+ + + + R+GGEEF Sbjct: 211 YNHPFSLVIFDIDFFKKVNDNYGHDMGDKVLVEYTKYISSILRDTDIFCRIGGEEFIVIL 270 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 +++ +A +LA LR+ +EN + + IT+S G+A + ++I R D AL Sbjct: 271 PNTTKDKAYLLAQKLRESVENYK------EILPITMSFGVAGYEKGDDDTSIYKRVDVAL 324 Query: 245 YVAKKSGRNRVV 256 Y AK++GRN+VV Sbjct: 325 YKAKETGRNKVV 336 >gi|300818294|ref|ZP_07098505.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] gi|300529185|gb|EFK50247.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] Length = 371 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|261251227|ref|ZP_05943801.1| sensory box/GGDEF family protein [Vibrio orientalis CIP 102891] gi|260938100|gb|EEX94088.1| sensory box/GGDEF family protein [Vibrio orientalis CIP 102891] Length = 633 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 18/177 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIV-FFDIDYFKQINDNFGH 148 NR+ LS D ++ L N F S + ++ N+ +S++ DID+FK++ND +GH Sbjct: 464 NRLRDLSEKDSMTSLWNRRKFDSEMQAHSARTKRYTNQAVSVLALIDIDHFKRVNDRYGH 523 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD VI ++ L V R+GGEEFA + +EA ++ N +R + Sbjct: 524 DKGDAVIRQVAKSLEKQLRETDLVARIGGEEFALILPHTDLREAEVVLNRIR-------V 576 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 +S ++IT+SAG+ E C + RAD ALY +K GRN+V S EN++ Sbjct: 577 AVSLESELNITVSAGLTEICSHQ--DETYKRADIALYESKSLGRNKVSILSMTENDS 631 >gi|222098886|ref|YP_002532944.1| hypothetical protein BCQ_5255 [Bacillus cereus Q1] gi|221242945|gb|ACM15655.1| conserved hypothetical protein [Bacillus cereus Q1] Length = 351 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 SIFI + F N++ I + P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F I + N+ L ++ DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L V P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|260550179|ref|ZP_05824392.1| GGDEF family protein [Acinetobacter sp. RUH2624] gi|260406707|gb|EEX00187.1| GGDEF family protein [Acinetobacter sp. RUH2624] Length = 397 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 84/282 (29%), Positives = 132/282 (46%), Gaps = 36/282 (12%) Query: 13 LCHEKNL-ESFSPHTFMIYF------------SIFFSIFI-ATVIFIANIFLFYIGLTPF 58 LCH+ L S SP T + Y I +S FI AT+I +L G+ P+ Sbjct: 117 LCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAVCTYLSMNGVIPY 176 Query: 59 YGLEYILVENLSLVIISITISLLLG---------YISGSILKELFISYNR-----ISQLS 104 L N + + + T LG ++ IL E+ ++ R I +LS Sbjct: 177 APLF-----NFTAIRHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYIQRLS 231 Query: 105 RIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +ID L+ +LN + + L + +E+ ++V DID+FK+IND +GH GD+V+ ++ Sbjct: 232 QIDPLTNVLNRRSLNAHLETLHEQQFDYALVLLDIDHFKKINDVYGHHQGDQVLIKIAQC 291 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L T +GR GGEEF + +A +A R ++ I + IH++ S Sbjct: 292 LSENLRTEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRLALQGLSIFNNQNIQIHVSAS 351 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 GI+ +I +AD+ALY K SGRN+V F I + Sbjct: 352 FGISSSAFANDPYIVIRQADEALYAVKASGRNQVRTFQQIPH 393 >gi|191166731|ref|ZP_03028558.1| MASE2 domain/diguanylate cyclase [Escherichia coli B7A] gi|194428836|ref|ZP_03061371.1| MASE2 domain/diguanylate cyclase [Escherichia coli B171] gi|190903242|gb|EDV62964.1| MASE2 domain/diguanylate cyclase [Escherichia coli B7A] gi|194413139|gb|EDX29426.1| MASE2 domain/diguanylate cyclase [Escherichia coli B171] Length = 366 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 171 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 290 VIMSGTP-AESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362 >gi|300940106|ref|ZP_07154714.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] gi|300455043|gb|EFK18536.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E Q ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE-LQPFTRQQKTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|66045350|ref|YP_235191.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63256057|gb|AAY37153.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 796 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 18/184 (9%) Query: 87 GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 GS+L F+S R+ Q LS D L+G N F + + + LSI Sbjct: 611 GSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 670 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ + Sbjct: 671 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGAQ 730 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A LA LR+ + N I G +T S GIA E I ++ RAD +Y AK++G Sbjct: 731 AYQLALSLREELRNQAIE---GVDQVVTGSFGIASWREGEGIDEMLLRADSGVYAAKQAG 787 Query: 252 RNRV 255 R+RV Sbjct: 788 RDRV 791 >gi|283856362|ref|YP_162654.2| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis subsp. mobilis ZM4] gi|283775361|gb|AAV89543.2| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis subsp. mobilis ZM4] Length = 1008 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 8/164 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+ D L+GLLN AF + ++ S+ DID+FK+INDN GH G Sbjct: 844 RLKELANTDELTGLLNRRAFTEMFEKNCAQFSKTKDQFSVFILDIDFFKKINDNEGHLAG 903 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D VI +++ ++ F R GGEEF + + +A+ + I + Sbjct: 904 DAVIQYIAQKITENIRQQDFAARYGGEEFVIMLPNADMETTCQVASRIGNAISEKPVPY- 962 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G I +T+S G+A + ++++ RAD+ LY+AK GRNRV Sbjct: 963 QGREIPVTVSIGVAVMKENDDANSLLERADERLYMAKNQGRNRV 1006 >gi|114569873|ref|YP_756553.1| diguanylate cyclase [Maricaulis maris MCS10] gi|114340335|gb|ABI65615.1| diguanylate cyclase [Maricaulis maris MCS10] Length = 350 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 9/174 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L + ++ + + D L+G+ N F SL + + LS++ DID+FK+ ND Sbjct: 165 QLRTNLEKVREEAMTDALTGIANRKRFDESLRRARRDADTKKQPLSLILCDIDFFKRFND 224 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD++I F++ L G V R GGEEF ++ A +A +RK +E Sbjct: 225 TWGHQTGDQIIRFVAGCLTRHAGENHLVARYGGEEFGIVMPNTAPNVAEQVAEKIRKTVE 284 Query: 205 NSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + + S+ + +IT+S GIA E I +I R+D LY +K GRNR Sbjct: 285 SKKLLRKSTNEDLGNITVSLGIATYHEGESIEELIERSDTNLYRSKTEGRNRTT 338 >gi|186685297|ref|YP_001868493.1| diguanylate cyclase with PAS/PAC sensor [Nostoc punctiforme PCC 73102] gi|186467749|gb|ACC83550.1| diguanylate cyclase with PAS/PAC sensor [Nostoc punctiforme PCC 73102] Length = 536 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 14/167 (8%) Query: 107 DCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+GL N F I ++ +++++++ DIDYFK IND FGH GD+VI Sbjct: 375 DGLTGLFNRRYFDEIFPKELIRAMRD-SDRVALIIMDIDYFKNINDTFGHQAGDRVIQVF 433 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +D L + V R GGEEF A G ++++A A +R + +Q+ S G IH Sbjct: 434 ADLLRNYSDSQNIVCRYGGEEFVLALPGLTQEKAYQHAEQIRLSFQAAQLE-SGGKQIHT 492 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+ H + ++ DQALY AK GRN C +++N Sbjct: 493 TVSGGVGVFPDHGKTTDELLQVVDQALYAAKLHGRN---CIKRVQSN 536 >gi|333008575|gb|EGK28043.1| diguanylate cyclase domain protein [Shigella flexneri VA-6] Length = 366 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 171 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 290 VIMSGTP-AESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362 >gi|238751415|ref|ZP_04612908.1| hypothetical protein yrohd0001_16030 [Yersinia rohdei ATCC 43380] gi|238710473|gb|EEQ02698.1| hypothetical protein yrohd0001_16030 [Yersinia rohdei ATCC 43380] Length = 519 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/156 (38%), Positives = 84/156 (53%), Gaps = 9/156 (5%) Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 ++ D ++GL N + SL E +++ DID FK IND++GH VGD+VI L+ Sbjct: 366 AQTDPMTGLYNRRGLATRLESLSQLGEDFAVIALDIDLFKSINDSYGHDVGDEVIKQLAI 425 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-IT 219 Q+ + R GGEEF G+ A +AN LR +E +I P IH IT Sbjct: 426 QIRDSSRDSDILCRSGGEEFLMLLPGTRPNVAIQVANRLRNKVETMEI-----PGIHPIT 480 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS G+A + + RAD+ALY AK++GRNRV Sbjct: 481 ISLGVAYWNGESMPEEALKRADEALYRAKENGRNRV 516 >gi|170683666|ref|YP_001743704.1| diguanylate cyclase [Escherichia coli SMS-3-5] gi|170521384|gb|ACB19562.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli SMS-3-5] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|113968612|ref|YP_732405.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113883296|gb|ABI37348.1| diguanylate cyclase [Shewanella sp. MR-4] Length = 485 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 16/198 (8%) Query: 68 NLSL-VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126 NL L ++++I I L+ G ++L I ++ D L+G N F Sbjct: 294 NLGLSLLVTIGILLISNMTLGRYQRKLEI-------MASTDKLTGAANRQVFEEYFHQAL 346 Query: 127 EK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 +K +SI+ DID+FK++ND++GH VGD V+ +++ L + R GGEE Sbjct: 347 DKAKLSRTPISILLIDIDHFKKVNDSYGHSVGDLVLKTVTNLLRSQLKEQDILCRWGGEE 406 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F AA LA R +I ++ ++ G I IT+S G+AE EP +I R Sbjct: 407 FIVLLPEMDLSHAAELAKHFRDLIFQRELKVN-GVHIAITVSIGVAEYQKLEPAEDLIKR 465 Query: 240 ADQALYVAKKSGRNRVVC 257 AD ALY AK+SGRN+VV Sbjct: 466 ADLALYQAKESGRNQVVL 483 >gi|114564780|ref|YP_752294.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114336073|gb|ABI73455.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 388 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 105/210 (50%), Gaps = 16/210 (7%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-- 120 Y +V +L + +S+ + Y+ S L E + L+ D L+ N F S Sbjct: 187 YAIVNFTALPAAYVGMSVFVIYMLASDLAE------EMKLLAMTDPLTDCFNRRGFYSHA 240 Query: 121 -----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 L + ++++DID FK IND FGH GD+V+ ++ + +GR+ Sbjct: 241 KQKLLELQKQPQHACLIYWDIDKFKAINDQFGHAGGDQVLISITQLIKQHIKKDDLIGRM 300 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIS 234 GGEEF S+ QEA +A LR +I + I + G I +T S G+ E +++ PI Sbjct: 301 GGEEFVILIERSNYQEAINVAERLRAMINQTPI-VYCGQQISVTASFGVVELSNQDIPIE 359 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENN 264 I AD ALY AK SGRN+VV FS++ + Sbjct: 360 QAIDLADSALYQAKSSGRNKVV-FSELSSR 388 >gi|212635204|ref|YP_002311729.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212556688|gb|ACJ29142.1| GGDEF domain protein [Shewanella piezotolerans WP3] Length = 347 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 10/164 (6%) Query: 107 DCLSGLLNHSAF----ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N AF IS + ++N+K S++ DID+FK+ ND GH +GDKV+ +++ Sbjct: 182 DQLTSLNNRRAFDEEVISHIDTFNQKEFESSLLVVDIDHFKKFNDVHGHLIGDKVLTYVA 241 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG---PSI 216 L FV R GGEEF + EA I+AN+LR+ I + I P Sbjct: 242 QALKQSVKGDDFVARYGGEEFVILLPNTGIDEAKIVANNLRQKIAKRNLTIGKEKKLPLG 301 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +IT+S G A +++ + RAD+ALY AK +GRN V+ S+ Sbjct: 302 NITVSVGCASLKNEDSKDSYFIRADEALYRAKSAGRNCVMVESE 345 >gi|254457441|ref|ZP_05070869.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207086233|gb|EDZ63517.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 369 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 11/190 (5%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 +I +++ +L GY+ S K +F+ + +++ D L+GL N + + Sbjct: 179 MIAALSFGILSGYLLESSQKTIFLKKEELEKIAITDKLTGLYNRTMSDKVVKDELEKSKR 238 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 Y ++ DIDYFK +ND +GH VGD V+ ++ L + + R GGEEF + Sbjct: 239 YGHSFGLMMLDIDYFKNVNDTYGHLVGDDVLVEFTNILKKYTRSTDTLIRWGGEEFIIIS 298 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 L + LA +RK +E T+S G+ + I++I+ RADQAL Sbjct: 299 LEVDKDGLMTLAEHIRKKVEGHNFKTVGTK----TVSIGVTLNKDNDDINSIVQRADQAL 354 Query: 245 YVAKKSGRNR 254 Y +K SGRNR Sbjct: 355 YKSKNSGRNR 364 >gi|190573427|ref|YP_001971272.1| putative GGDEF family signalling protein [Stenotrophomonas maltophilia K279a] gi|190011349|emb|CAQ44964.1| putative GGDEF family signalling protein [Stenotrophomonas maltophilia K279a] Length = 481 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 10/172 (5%) Query: 97 YNRISQL-SRIDCLSGLLNHSAFISS-------LGSYNE-KLSIVFFDIDYFKQINDNFG 147 + RI +L + D L+ LLN F+ + L + N S++ D+D+FK IND G Sbjct: 297 FERIGELDAGSDALTNLLNRR-FLPTVLRREIELATRNRTPFSLLLLDLDHFKAINDGHG 355 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+ + ++ L + ++ R GGEEF + +SE +A ++A LR+ I S Sbjct: 356 HDAGDRALQHVAGLLGQLTRGSDYLFRYGGEEFVVVLVAASESQATVIAESLRRQIAQSP 415 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +++G + +T S G+A ++ RAD A+Y AK+SGRNRVV S Sbjct: 416 VALANGQVLELTASIGVAGHDGHPDYERLMARADAAMYEAKRSGRNRVVVAS 467 >gi|300989677|ref|ZP_07178950.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1] gi|300407293|gb|EFJ90831.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|260778798|ref|ZP_05887690.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450] gi|260604962|gb|EEX31257.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450] Length = 347 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 26/233 (11%) Query: 38 FIATVI-FIANIFL-----FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91 F+AT++ FI+ +FL F G+ ++ L + N +L +S+ +++ IL+ Sbjct: 117 FVATMMGFISQLFLVVDKSFVDGVVSYFEL----IVNFALAYLSV-------WLASHILE 165 Query: 92 -ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDN 145 + S + QL+ D L+ + N A I + Y ++ LS++ D+DYFKQ+ND Sbjct: 166 VKRKTSEASLGQLASRDALTSVYNRHALIHNFDRYRQESETLPLSLLVLDLDYFKQVNDE 225 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH +GDKV+ + L+ V R+GGEEF A ++ Q A I A +R IE Sbjct: 226 FGHDIGDKVLV-QTAALIDGLSDEHLVYRIGGEEFCIALHNTNIQHAMIKAEQIRMAIER 284 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VC 257 + N + P I +T S GI + + +++ AD+ LY AKK+GRN+V VC Sbjct: 285 YRFNSNEQP-ISLTASIGIYQCDLYNDLESVLKEADKELYKAKKNGRNQVMVC 336 >gi|297568907|ref|YP_003690251.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] gi|296924822|gb|ADH85632.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] Length = 396 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 71/217 (32%), Positives = 99/217 (45%), Gaps = 18/217 (8%) Query: 55 LTPFYGLE-------YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107 L P Y E Y L +L+L + + Y G + + Y + +LS D Sbjct: 174 LLPLYAKERVVGVFFYYLPPDLTLTKAELETFQTVSYQLGLAIDNARL-YETVRRLSIYD 232 Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+GL NH F +S LS++ DID+FK++ND +GH GD V+ LS Sbjct: 233 PLTGLFNHGQFYNLLAEELSRHQRTGRPLSLLMLDIDHFKKVNDTYGHRAGDAVLQQLSG 292 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L V R GGEE A + + A A LR+ +E I +T+ Sbjct: 293 LLKKQARAIDRVCRYGGEELALILPETDREAARQTAERLRRHVEKCCFATCGQQEIGVTV 352 Query: 221 SAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 S G A C IS T++ AD+ALY AK++GRNRV Sbjct: 353 SIGAAT-CPDAAISAETLVNAADRALYAAKRAGRNRV 388 >gi|114799330|ref|YP_761053.1| GGDEF/GAF domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114739504|gb|ABI77629.1| GGDEF/GAF domain protein [Hyphomonas neptunium ATCC 15444] Length = 369 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 9/161 (5%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+ LNH AF + ++ +S++ FDID+FK++ND GH GD+VI Sbjct: 184 LAVTDPLTKALNHRAFFRFAEREVQRAQRHHHPVSVLMFDIDHFKKVNDIHGHAAGDEVI 243 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 LS + +GRLGGEEF +S + A LAN LR+ +++ + S G + Sbjct: 244 IRLSRLVTECVREADLLGRLGGEEFGLILPETSLEAAVTLANRLREAVKDLRFKSSEG-T 302 Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 +TIS G+++ E I + RAD+ALY AK+ GR+R Sbjct: 303 FGVTISLGVSQPGDTETDIVPALDRADKALYRAKRFGRDRA 343 >gi|148654756|ref|YP_001274961.1| PAS/PAC sensor-containing diguanylate cyclase [Roseiflexus sp. RS-1] gi|148566866|gb|ABQ89011.1| diguanylate cyclase with PAS/PAC sensor [Roseiflexus sp. RS-1] Length = 305 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISS--------LGSYNEKLSIVFFDIDYFKQINDNFGHP 149 R+ L+ +D L+G+ N FI S L Y ++ DID+FK +ND FGH Sbjct: 132 ERLRALALLDPLTGIGNRR-FIESNTHSRLEELRRYGWTFGVILIDIDHFKAVNDRFGHL 190 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD V+ ++ L VGR GGEEF A S LA LR IE S + Sbjct: 191 VGDDVLKMVARTLAHNIRAFDVVGRWGGEEFVVIAQNVSIATLESLAERLRVFIEQSSLP 250 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ +H+T+S G + ++I+ RADQ LYV+K+ GRNRV D Sbjct: 251 VAD-KVVHVTVSLGATLARRTDTPASILGRADQMLYVSKQRGRNRVSVEED 300 >gi|16760930|ref|NP_456547.1| hypothetical protein STY2194 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141378|ref|NP_804720.1| hypothetical protein t0891 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053044|ref|ZP_03345922.1| hypothetical protein Salmoneentericaenterica_09073 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424988|ref|ZP_03357738.1| hypothetical protein SentesTyphi_04385 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213650737|ref|ZP_03380790.1| hypothetical protein SentesTy_28024 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|20140617|sp|Q8Z5R0|YEDQ_SALTI RecName: Full=Cellulose synthesis regulatory protein gi|25512058|pir||AC0754 probable membrane protein STY2194 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503227|emb|CAD05734.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137005|gb|AAO68569.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 567 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 20/206 (9%) Query: 74 ISITISLLLGYISGSIL----------KELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 ISI ++LL G + +L K +F+ N + D L+ L N A Sbjct: 355 ISIALTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSPQWQAWHDPLTRLYNRGALFEKAS 414 Query: 124 S----YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+G Sbjct: 415 RLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVG 474 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234 GEEF G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE Sbjct: 475 GEEFCIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFE 534 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260 + AD+ LY AK+SGRNR +C SD Sbjct: 535 QLQSLADKRLYYAKQSGRNR-ICASD 559 >gi|261856032|ref|YP_003263315.1| diguanylate cyclase [Halothiobacillus neapolitanus c2] gi|261836501|gb|ACX96268.1| diguanylate cyclase [Halothiobacillus neapolitanus c2] Length = 247 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 21/184 (11%) Query: 86 SGSILKELFISYNRISQLS-------RIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDI 136 S +EL + R+ +L+ R D L+ LLN + I+ K +++ DI Sbjct: 61 SDRTERELNNANQRLRELTEALTFQNRHDGLTRLLNRTTLINEAEQLLKTTKSALIMIDI 120 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FKQIND +GHP GD+V+ L+D L + P GRLGGEEFA + +E LA Sbjct: 121 DHFKQINDRYGHPTGDRVLVGLADTLRSIIQPPALCGRLGGEEFAIVLPTNQLEEVISLA 180 Query: 197 NDLRKIIEN----SQINISSGPSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSG 251 + + I N S++ + S+ IT++ G+ T+ D ALY AK G Sbjct: 181 EKISEEIRNLRCESELGLRMTASLSITLARPGVN-------FDTLYLCGDDALYRAKHDG 233 Query: 252 RNRV 255 RNR+ Sbjct: 234 RNRI 237 >gi|110834979|ref|YP_693838.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2] gi|110648090|emb|CAL17566.1| GGDEF domain protein [Alcanivorax borkumensis SK2] Length = 409 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 124/258 (48%), Gaps = 36/258 (13%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG-YISGSILKE 92 F+ ++ I IA +F + L P G L LV ++ T + L G Y+ +L++ Sbjct: 149 FYVALGSSAIMIA-CMIFSLQLNP--GRYPFEPTTLVLVSLAFTCTGLFGQYVYERLLRQ 205 Query: 93 LFISYNRISQ--------------LSRIDCLSGLLNHSAFISSLG-----------SYNE 127 F+S + + Q + +D ++G +N S L E Sbjct: 206 YFLSEHVLFQHRNELHSANLVLENQATVDGMTGCINRRGMESRLNHLYHQLKQKTPDAPE 265 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD-QLVVVFGTPMFVGRLGGEEFAAAALG 186 +++++ FDID+FKQ ND +GHP GD+ + ++ L +V FV R GGEEF Sbjct: 266 RITLILFDIDFFKQYNDTYGHPAGDECLKKVASVPLGMVQSDTDFVARYGGEEFVITLAD 325 Query: 187 SSEQEAAILANDLRKIIENSQINIS-SGPSIH--ITISAGIA-ERCHKEPISTIIYRADQ 242 SS +A + A +R +E Q+ I SG I +TIS G+A + E ++ AD+ Sbjct: 326 SSFNDALVFAERMRNRVE--QLGIPHSGSRISQVVTISVGVACSDSNAENGGQLLKMADE 383 Query: 243 ALYVAKKSGRNRVVCFSD 260 ALY AK SGRNRV S+ Sbjct: 384 ALYQAKGSGRNRVALMSN 401 >gi|324116869|gb|EGC10782.1| diguanylate cyclase domain-containing protein [Escherichia coli E1167] Length = 366 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 171 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 290 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362 >gi|301385835|ref|ZP_07234253.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. tomato Max13] gi|302061854|ref|ZP_07253395.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. tomato K40] gi|302135185|ref|ZP_07261175.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 786 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 18/184 (9%) Query: 87 GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 GS+L F+S R+ + LS D L+G N F + + + LSI Sbjct: 601 GSVLWHGFVSDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 660 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ + Sbjct: 661 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGGQ 720 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A LA LR+ + N I G +T S GIA E I T++ RAD +Y AK++G Sbjct: 721 AYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAG 777 Query: 252 RNRV 255 R+RV Sbjct: 778 RDRV 781 >gi|163759598|ref|ZP_02166683.1| putative sensory box/GGDEF family protein [Hoeflea phototrophica DFL-43] gi|162283195|gb|EDQ33481.1| putative sensory box/GGDEF family protein [Hoeflea phototrophica DFL-43] Length = 340 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 96/186 (51%), Gaps = 12/186 (6%) Query: 83 GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-ISSLGSYNE-----KLSIVFFDI 136 ++ I+ EL N Q++ D L+GL N AF I G YNE + +++ DI Sbjct: 125 AHVVTRIINEL----NTYKQIANTDMLTGLANRRAFDIQLEGIYNEPGKLPQTALIICDI 180 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK ND +GH +GD V+ +++ + R+GGEEFA +S Q+ ++A Sbjct: 181 DHFKSFNDTYGHAIGDTVLKTVAETIRESLPANATPARIGGEEFAIIVEKASLQQVQLIA 240 Query: 197 NDLRKIIENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 R+ IE+ I+ SG +TIS GI +S + +AD ALY +KKSGRNR Sbjct: 241 ETARRAIEDRMFIDEESGTDCGKVTISMGICLADVAAKMSELYQKADLALYASKKSGRNR 300 Query: 255 VVCFSD 260 F + Sbjct: 301 CTVFDE 306 >gi|289829477|ref|ZP_06547089.1| hypothetical protein Salmonellentericaenterica_23168 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 567 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 20/206 (9%) Query: 74 ISITISLLLGYISGSIL----------KELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 ISI ++LL G + +L K +F+ N + D L+ L N A Sbjct: 355 ISIALTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSPQWQAWHDPLTRLYNRGALFEKAS 414 Query: 124 S----YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 Y E S++ D+DYFK +ND FGH GD+V++ + + GR+G Sbjct: 415 RLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVG 474 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234 GEEF G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE Sbjct: 475 GEEFCIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFE 534 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260 + AD+ LY AK+SGRNR +C SD Sbjct: 535 QLQSLADKRLYYAKQSGRNR-ICASD 559 >gi|86158001|ref|YP_464786.1| diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774512|gb|ABC81349.1| diguanylate cyclase with GAF sensor [Anaeromyxobacter dehalogenans 2CP-C] Length = 764 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 13/176 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 +++ +L+ D L+GL NH F L + Y ++ S++ DID+FK +ND +GHP Sbjct: 585 FDQTERLATTDGLTGLTNHRTFQERLDAHLGQAQRYGKRTSLLLCDIDHFKSVNDTYGHP 644 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ ++ L V R GGEEFA + A ++A +R+ + Sbjct: 645 VGDQVLRGVARTLARAARGTDVVARYGGEEFAIVMPETDTGGAMVIAERIREKVGQLVFE 704 Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 GP + +T+S G+A + ++P +I RAD LY AK+ GRN+ V + + Sbjct: 705 TEQGP-LKVTLSLGVATFPDDGGQKP--ALIERADACLYHAKRHGRNQSVSAASLR 757 >gi|15891865|ref|NP_357537.1| GGDEF family protein [Agrobacterium tumefaciens str. C58] gi|15160355|gb|AAK90322.1| GGDEF family protein [Agrobacterium tumefaciens str. C58] Length = 589 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 4/163 (2%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDK 153 R+ ++R D L+GLLN + +L + EK L+ + DID+FK+ ND FGH GD Sbjct: 422 QRLVGMARQDALTGLLNRRSLDEALNRHIEKPTGSLACLMLDIDHFKRFNDRFGHDAGDA 481 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ +++ L + R GGEEF + ++A LA LR +E + Sbjct: 482 VMQYVAQVLSEATSDQGTLFRFGGEEFTVLMPDAGIEDATKLAEKLRHAVERAPFTYRGR 541 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +TIS GIA +S+++ RAD AL AK++GRN+ V Sbjct: 542 LLDPVTISIGIATAPGAGTVSSVLERADAALLSAKQTGRNKWV 584 >gi|82775715|ref|YP_402062.1| diguanylate cyclase AdrA [Shigella dysenteriae Sd197] gi|309786950|ref|ZP_07681562.1| diguanylate cyclase domain protein [Shigella dysenteriae 1617] gi|81239863|gb|ABB60573.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308924528|gb|EFP70023.1| diguanylate cyclase domain protein [Shigella dysenteriae 1617] Length = 371 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|331682992|ref|ZP_08383600.1| putative GGDEF domain protein [Escherichia coli H299] gi|327254180|gb|EGE65809.1| hypothetical protein ECSTEC7V_1611 [Escherichia coli STEC_7v] gi|331079813|gb|EGI51003.1| putative GGDEF domain protein [Escherichia coli H299] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|28869513|ref|NP_792132.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852755|gb|AAO55827.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 323 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 18/185 (9%) Query: 86 SGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130 GS+L F+S R+ + LS D L+G N F + + + LS Sbjct: 137 DGSVLWHGFVSDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLS 196 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 I+ DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ Sbjct: 197 IIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGG 256 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +A LA LR+ + N I G +T S GIA E I T++ RAD +Y AK++ Sbjct: 257 QAYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQA 313 Query: 251 GRNRV 255 GR+RV Sbjct: 314 GRDRV 318 >gi|332098568|gb|EGJ03534.1| diguanylate cyclase domain protein [Shigella boydii 3594-74] Length = 320 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 106/201 (52%), Gaps = 25/201 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 125 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 183 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 184 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 243 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 244 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 294 Query: 239 R-----ADQALYVAKKSGRNR 254 R AD ALY AKK+GRNR Sbjct: 295 REWLKSADLALYKAKKAGRNR 315 >gi|291288622|ref|YP_003505438.1| response regulator receiver modulated diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] gi|290885782|gb|ADD69482.1| response regulator receiver modulated diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] Length = 312 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 8/173 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 KEL +Y++I L+ D L+G+ N + LG K S++ DID+FK++N Sbjct: 138 KELIEAYDKIEHLALTDTLTGIANRRNITNMLGKEAARCKRNKGKFSLIMCDIDFFKRVN 197 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD V+ +S + V R GGEEF + A +A LR I Sbjct: 198 DTYGHDAGDYVLKTISHVIQQALREQDIVARWGGEEFLIVLPETDAGNAVAVAEKLRTAI 257 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 N++++ G S +T++ G++E I I +AD ALY K++GRN+VV Sbjct: 258 GNTEMSY-EGISFSVTMTFGVSEYDVSLGIEKSIKKADDALYEGKQTGRNKVV 309 >gi|85711690|ref|ZP_01042747.1| hypothetical protein OS145_00775 [Idiomarina baltica OS145] gi|85694550|gb|EAQ32491.1| hypothetical protein OS145_00775 [Idiomarina baltica OS145] Length = 363 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 10/165 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-YNEK----LSIVFFDIDYFKQINDNFGHPVGDK 153 R+ ++++ D L+ L N +L S Y E+ +S++ D+D FK+IND GH GD+ Sbjct: 189 RLEKMAKTDKLTQLYNRQYLDVTLFSLYKERRTLPISVLLLDVDLFKRINDEHGHLFGDE 248 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ ++ +L V VGR GGEEF A +S+ +A LA +R+ +N+S Sbjct: 249 VLVKMAQRLTEVVRDDDVVGRWGGEEFLIIAPNTSKSDALGLAERVRR-----SLNMSIT 303 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S+ ++S G++ + +I +AD+ALY AK +GRN+V F Sbjct: 304 ESVTTSVSIGVSSADRVKSPEELISQADRALYQAKSNGRNQVCSF 348 >gi|110641684|ref|YP_669414.1| hypothetical protein ECP_1506 [Escherichia coli 536] gi|191174149|ref|ZP_03035662.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11] gi|300978868|ref|ZP_07174387.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1] gi|110343276|gb|ABG69513.1| hypothetical protein YneF [Escherichia coli 536] gi|190905567|gb|EDV65193.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11] gi|300308087|gb|EFJ62607.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1] gi|324014838|gb|EGB84057.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|300918239|ref|ZP_07134844.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1] gi|300414582|gb|EFJ97892.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1] Length = 371 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|317053536|ref|YP_004118670.1| diguanylate cyclase [Pantoea sp. At-9b] gi|316952641|gb|ADU72114.1| diguanylate cyclase [Pantoea sp. At-9b] Length = 571 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/167 (38%), Positives = 84/167 (50%), Gaps = 13/167 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFF---DIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N AF SL S + I+F D+DYFK IND +GHPVG Sbjct: 399 RRLQYLAETDELTGLFNRRAFDQTGESLLSGHRPGVIIFLIIMDLDYFKLINDRYGHPVG 458 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ +D + R+GGEEFA G+ A LA ++K + N Sbjct: 459 DSVLTAAADVIRTHITEGDMAARIGGEEFAIVVSGTESTSALRLAESIQKGLHNRDSRAP 518 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-----ADQALYVAKKSGRN 253 G I+IT S GIA K+ S +R AD ALY AK+SGR+ Sbjct: 519 DGDRINITASFGIA--GTKQDSSNTSWRQLIADADSALYEAKRSGRD 563 >gi|222086220|ref|YP_002544752.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] gi|221723668|gb|ACM26824.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] Length = 355 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 18/177 (10%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKLS-----IVFFDIDYFKQ 141 + KEL Y RI+ D L+ L N AF L + ++ +++ +V DID+FK+ Sbjct: 164 QVRKELD-EYKRIAN---TDALTRLSNRRAFDDRLAAVFDNQMARPVTALVLADIDHFKK 219 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 INDN+GHPVGDK++A ++ + FV R GGEEFA G + +A +R+ Sbjct: 220 INDNYGHPVGDKILATVASVIRANVRREAFVARTGGEEFALILEGYTPDDALATCERIRR 279 Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +E NS+ ++ GP ITIS G+ + +AD ALY AK +GRN Sbjct: 280 ALEATPFKNSRTRVNYGP---ITISLGVCMASDATDPGELYGKADIALYSAKNAGRN 333 >gi|218688248|ref|YP_002396460.1| diguanylate cyclase AdrA [Escherichia coli ED1a] gi|218425812|emb|CAR06618.1| putative diguanylate cyclase [Escherichia coli ED1a] Length = 371 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|331647045|ref|ZP_08348139.1| putative GGDEF domain protein [Escherichia coli M605] gi|331043828|gb|EGI15964.1| putative GGDEF domain protein [Escherichia coli M605] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|241761674|ref|ZP_04759761.1| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373982|gb|EER63515.1| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 839 Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 11/172 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL + ++S+L+ D L+GLLN A ++ L ++ +SI D+D+FK+IND Sbjct: 669 ELQQANKQLSELANTDVLTGLLNRRALMAKLSELHQDALLNENAISIAMLDVDHFKKIND 728 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH VGD V+ + + F GR GG+EF A S E I A +R E Sbjct: 729 RYGHLVGDDVMRNAASIIRNNIRQEDFAGRYGGDEFIIAISASIEMSRHI-AERIRN--E 785 Query: 205 NSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++I I +G + + IT+S G+ E +E IS + +AD LY AK +GRNRV Sbjct: 786 FTKIVIKNGETELKITVSIGLFEITTEESISIALDKADSLLYWAKNNGRNRV 837 >gi|228988642|ref|ZP_04148728.1| GGDEF domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771093|gb|EEM19573.1| GGDEF domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 351 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 SIFI + F N++ I + P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F IS+ + N+ L ++F DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNRHISNKRTKNDSLCLLFIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND + HP GD+V+ + L + P R GGEEFA + +R Sbjct: 237 NDTYRHPAGDEVLKQIGCILREISPFPDLAFRKGGEEFALLIPQKGLAYGMHMGEQVRAA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|220917475|ref|YP_002492779.1| diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955329|gb|ACL65713.1| diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] Length = 764 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 13/176 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 +++ +L+ D L+GL NH F L + Y ++ S++ DID+FK +ND +GHP Sbjct: 585 FDQTERLATTDGLTGLTNHRTFQERLDAHLGQAQRYGKRTSLLLCDIDHFKSVNDTYGHP 644 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ ++ L V R GGEEFA + A ++A +R+ + Sbjct: 645 VGDQVLRGVARTLARAARGTDVVARYGGEEFAIVMPETDTGGAMVIAERIREKVGQLVFE 704 Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 GP + +T+S G+A + ++P +I RAD LY AK+ GRN+ V + + Sbjct: 705 TEQGP-LKVTLSLGVATFPDDGAQKP--ALIERADACLYHAKRHGRNQSVSAASLR 757 >gi|16801091|ref|NP_471359.1| hypothetical protein lin2025 [Listeria innocua Clip11262] gi|16414526|emb|CAC97255.1| lin2025 [Listeria innocua Clip11262] Length = 379 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 + Q + +D L+GL N F + + LS++ DIDYFK++ND +GH VG Sbjct: 204 ELQQSTILDPLTGLTNFRHFEKTFEAAFHYATLKKSNLSLIIIDIDYFKRVNDTYGHLVG 263 Query: 152 DKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 264 NGVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPI 323 Query: 211 SSGPSIHITISAGIAERCHKE-P-ISTIIYRADQALYVAKKSGRNRV 255 ++ S+ ITISAGIA K P + +++ ADQALY AK++GRN+V Sbjct: 324 ATTGSV-ITISAGIANYDGKNYPNANELMHAADQALYNAKRNGRNQV 369 >gi|193068692|ref|ZP_03049653.1| MASE2 domain/diguanylate cyclase [Escherichia coli E110019] gi|192958055|gb|EDV88497.1| MASE2 domain/diguanylate cyclase [Escherichia coli E110019] Length = 371 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|169829516|ref|YP_001699674.1| diguanylate cyclase [Lysinibacillus sphaericus C3-41] gi|168994004|gb|ACA41544.1| putative diguanylate cyclase (GGDEF domain) [Lysinibacillus sphaericus C3-41] Length = 325 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 12/168 (7%) Query: 102 QLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N F L SY E S+ DID+FK++ND FGH VGD V Sbjct: 163 ELSETDKLTGLKNRRFFQEKLEQQLNSYYESAKPFSLCILDIDHFKKVNDTFGHQVGDDV 222 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +A L+ L V R GGEEF + A + +RK + + P Sbjct: 223 LAQLAQLLTQRARKEDTVVRYGGEEFVMILPETEIAAAKEIGEQIRKTV-----ALDHWP 277 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +TIS G+A K+ +T++ AD ALY +KK+GRN+V F D++ Sbjct: 278 VGQVTISIGLATVTSKDTGTTLLKNADDALYASKKNGRNQVTHFYDMK 325 >gi|197122692|ref|YP_002134643.1| diguanylate cyclase [Anaeromyxobacter sp. K] gi|196172541|gb|ACG73514.1| diguanylate cyclase [Anaeromyxobacter sp. K] Length = 764 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 13/176 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 +++ +L+ D L+GL NH F L + Y ++ S++ DID+FK +ND +GHP Sbjct: 585 FDQTERLATTDGLTGLTNHRTFQERLDAHLGQAQRYGKRTSLLLCDIDHFKSVNDTYGHP 644 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ ++ L V R GGEEFA + A ++A +R+ + Sbjct: 645 VGDQVLRGVARTLARAARGTDVVARYGGEEFAIVMPETDTGGAMVIAERIREKVGQLVFE 704 Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 GP + +T+S G+A + ++P +I RAD LY AK+ GRN+ V + + Sbjct: 705 TEQGP-LKVTLSLGVATFPDDGAQKP--ALIERADACLYHAKRHGRNQSVSAASLR 757 >gi|95931350|ref|ZP_01314063.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95132593|gb|EAT14279.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 762 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 15/191 (7%) Query: 81 LLGYISG--SILKELFISYN-RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLS 130 +L +I+G S+ YN R+ LS D L+GL N L Y Sbjct: 576 VLAFIAGVFSVHYYQLRKYNQRLLVLSETDKLTGLANRLKLDKMLLEQEQLFVRYQIPCG 635 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ FDID+FK +ND +GHPVGD+V+ ++ + VGR GGEEF A S+ + Sbjct: 636 VIIFDIDHFKTVNDTYGHPVGDQVLKEIAQLIRENIRVTDHVGRWGGEEFLIIAPSSNRE 695 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 E LA+ L + N Q + +T S G+ H+ S ++ AD+ALY AK Sbjct: 696 ETEQLADKLLSALRNHQFDQVGT----VTASFGVCALRHELSASKVLSLADKALYQAKAE 751 Query: 251 GRNRVV-CFSD 260 GRNRV+ C S+ Sbjct: 752 GRNRVISCVSE 762 >gi|331016194|gb|EGH96250.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 786 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 18/184 (9%) Query: 87 GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 GS+L F+S R+ + LS D L+G N F + + + LSI Sbjct: 601 GSVLWHGFVSDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 660 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ + Sbjct: 661 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGGQ 720 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A LA LR+ + N I G +T S GIA E I T++ RAD +Y AK++G Sbjct: 721 AYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAG 777 Query: 252 RNRV 255 R+RV Sbjct: 778 RDRV 781 >gi|296282041|ref|ZP_06860039.1| hypothetical protein CbatJ_00385 [Citromicrobium bathyomarinum JL354] Length = 348 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 119/251 (47%), Gaps = 20/251 (7%) Query: 10 SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69 ++ L ++N ++F + F + + + +F A TP+ + L E + Sbjct: 96 TLALARKRNRDAFENGLVALGFLVITGVILRVPMFPA----LLDEPTPWAVFDAALFERV 151 Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEK 128 + + + + L I I+ ++ + Y S+ D L+ LLN AF + +G Sbjct: 152 YIQCMGVLNASLALLIVARIVAKVIVGYRHSSER---DGLTELLNRRAFDALVGRPATAP 208 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 +I+ DID FKQIND FGH VGD+VI LS+ GR+GGEEFA Sbjct: 209 GAIIMCDIDRFKQINDRFGHHVGDEVIRSFACMLSEH-------GHHAGRVGGEEFALLL 261 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 L + EAA A +R +S + + GP + ++ S G+A + + AD+AL Sbjct: 262 LDTGLDEAAAQAERIRSAF-DSLYHPAIGPDVQLSASFGVAAFEPGSSVRAAMRSADRAL 320 Query: 245 YVAKKSGRNRV 255 Y AK +GRNRV Sbjct: 321 YTAKHTGRNRV 331 >gi|261251076|ref|ZP_05943650.1| hypothetical protein VIA_001095 [Vibrio orientalis CIP 102891] gi|260937949|gb|EEX93937.1| hypothetical protein VIA_001095 [Vibrio orientalis CIP 102891] Length = 457 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 76/140 (54%), Gaps = 1/140 (0%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 E L++V DID+FK+INDN+GH VGD ++ ++ +GR+GGEEFA L Sbjct: 319 EPLAVVIIDIDHFKKINDNYGHQVGDLALSRFAEMCCREIRASDIIGRIGGEEFAIILLN 378 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 + +RK + S N S S+ +TIS G+A + +I RAD ALY Sbjct: 379 VDLAIVNEVTERIRKRVAESNFN-SEVSSLSMTISLGVALSDQAHTLEHLIKRADGALYQ 437 Query: 247 AKKSGRNRVVCFSDIENNTC 266 AK SGRNRVV ++ +C Sbjct: 438 AKVSGRNRVVISEQVKEESC 457 >gi|251791755|ref|YP_003006476.1| PAS/PAC and GAF sensors-containing diguanylate cyclase [Dickeya zeae Ech1591] gi|247540376|gb|ACT08997.1| diguanylate cyclase with PAS/PAC and GAF sensors [Dickeya zeae Ech1591] Length = 771 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 11/168 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ +++ D L+G+ N A+I ++ + ++ DID+FK++ND +GH VGD Sbjct: 603 KLLEMANTDVLTGIHNRRAYILETEKCYRNHEKNTALAIIDIDFFKKVNDQYGHHVGDVA 662 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I L++ + T FV RLGGEEF ++ + N +R +EN+ + G Sbjct: 663 ICRLAEIITSKLRTDDFVARLGGEEFGLIVHNANLDNVDAIMNGIRTEVENTLFTV-DGY 721 Query: 215 SIHITISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNRVV 256 S H T+S G H K+ + + RAD ALY AK +GRNRVV Sbjct: 722 SFHFTVSIGATFIKHRNIQSLKDNFESDMKRADDALYEAKNAGRNRVV 769 >gi|114776517|ref|ZP_01451562.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Mariprofundus ferrooxydans PV-1] gi|114553347|gb|EAU55745.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Mariprofundus ferrooxydans PV-1] Length = 592 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 83/163 (50%), Gaps = 13/163 (7%) Query: 101 SQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 L+R D L+G LN A S YN L++V D+D FK INDN+GH GD Sbjct: 425 EHLARTDALTGALNRRACFESGETEFDRARRYNTPLAVVMIDLDLFKSINDNYGHATGDA 484 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + + L + T +GR+GGEEF +S Q+AA L R I ++ + Sbjct: 485 VLVAVVETLRGMTRTVDTIGRIGGEEFIVLLPQTSLQDAAALTERYRGAIGQLEVTLDD- 543 Query: 214 PSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRN 253 +I +T S G+A C E ++ I RAD ALY AK GRN Sbjct: 544 LAIKVTASFGVA--CVDVTGETLTQAIGRADAALYRAKSRGRN 584 >gi|91210764|ref|YP_540750.1| hypothetical protein UTI89_C1741 [Escherichia coli UTI89] gi|117623743|ref|YP_852656.1| hypothetical protein APECO1_642 [Escherichia coli APEC O1] gi|218558425|ref|YP_002391338.1| membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia coli S88] gi|237705492|ref|ZP_04535973.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91072338|gb|ABE07219.1| hypothetical protein YneF [Escherichia coli UTI89] gi|115512867|gb|ABJ00942.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218365194|emb|CAR02914.1| putative membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia coli S88] gi|226900249|gb|EEH86508.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|294491119|gb|ADE89875.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli IHE3034] gi|307626960|gb|ADN71264.1| putative membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia coli UM146] gi|315286216|gb|EFU45652.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3] gi|323952538|gb|EGB48410.1| GGDEF domain-containing protein [Escherichia coli H252] gi|323956717|gb|EGB52452.1| GGDEF domain-containing protein [Escherichia coli H263] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|83593925|ref|YP_427677.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170] gi|83576839|gb|ABC23390.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum ATCC 11170] Length = 569 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 12/163 (7%) Query: 104 SRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +R D L+GLLN +F+ SL Y +++ D+D+FK +ND GH VGD V+ Sbjct: 400 ARTDFLTGLLNRRSFVDLAERELARSL-RYQRPFTLLMIDVDHFKAVNDTRGHLVGDVVL 458 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ ++ GR GGEEFAA + + EA +A L ++ +I G Sbjct: 459 QNVARRIKETLRLIDIFGRTGGEEFAAVIVETGGPEALEIARRLCAVVARDEIVQPEGEP 518 Query: 216 IHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256 I +TIS G+ R + I S ++ ADQALY AK++GRN+VV Sbjct: 519 IGVTISIGLT-RSNGRSISFSALMNEADQALYAAKRAGRNQVV 560 >gi|115525334|ref|YP_782245.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] gi|115519281|gb|ABJ07265.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] Length = 349 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 9/166 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D ++G+ N F++ Y +S + DIDYFK IND FGH VGD Sbjct: 160 LERLATTDGMTGVYNRRHFLTLADREWARARRYGRPISFLMIDIDYFKSINDGFGHHVGD 219 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++I L++ + R+GGEEFA + +A I+A LR + + ++S Sbjct: 220 EMIVHLANLARDCKRECDVLARIGGEEFALLLPETDLPQAQIIAERLRAEVAAKALVVAS 279 Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 G SI T+S G+A IS ++ ADQALY AK +GRNRV+C Sbjct: 280 G-SIPATVSIGVATSAAAMNDISDLMKAADQALYDAKHAGRNRVIC 324 >gi|330895801|gb|EGH28090.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 418 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N + I ++ + S++ DID+FK +ND +GHP Sbjct: 255 QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 314 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI ++ L R GGEEF SS ++AA LA +RK +E+ I Sbjct: 315 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRKSVESLVIPE 374 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +TIS G+AE E + +I RAD+ALY AK+ GRNRV C Sbjct: 375 TGS----VTISLGVAELSAGETAAGLIQRADKALYQAKRLGRNRVEC 417 >gi|215486735|ref|YP_002329166.1| predicted diguanylate cyclase [Escherichia coli O127:H6 str. E2348/69] gi|215264807|emb|CAS09191.1| predicted diguanylate cyclase [Escherichia coli O127:H6 str. E2348/69] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|148547132|ref|YP_001267234.1| diguanylate cyclase [Pseudomonas putida F1] gi|148511190|gb|ABQ78050.1| diguanylate cyclase [Pseudomonas putida F1] Length = 469 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 13/169 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHP 149 R++ + +D L+G+L SAF + E L+++ DID+FK IND GH Sbjct: 292 RLAHQATVDHLTGVLTRSAFTRRANALLESRQQHAQALPLTLMMLDIDHFKSINDAHGHA 351 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ + L + RLGGEEF G + + A +A LR+ I++ + Sbjct: 352 VGDQVLRQFASTLQDQLHNDELIARLGGEEFVVILPGLAPERANFIAERLRRAIQDLHV- 410 Query: 210 ISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255 + + + IT+S G+A P + ++ ADQALY AK GRNRV Sbjct: 411 VQADQRLQITVSIGVAGCDADMPAPSLDELLASADQALYRAKARGRNRV 459 >gi|281178630|dbj|BAI54960.1| conserved hypothetical protein [Escherichia coli SE15] gi|330911367|gb|EGH39877.1| hypothetical protein ECAA86_01722 [Escherichia coli AA86] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|324006875|gb|EGB76094.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|110804408|ref|YP_687928.1| diguanylate cyclase AdrA [Shigella flexneri 5 str. 8401] gi|110613956|gb|ABF02623.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 371 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 25/201 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + L+ G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPII-VVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVVLTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNR 254 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNR 366 >gi|330875542|gb|EGH09691.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 786 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 18/184 (9%) Query: 87 GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 GS+L F+S R+ + LS D L+G N F + + + LSI Sbjct: 601 GSVLWHGFVSDITDLKRVEEELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 660 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ + Sbjct: 661 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVVCPGTRGGQ 720 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A LA LR+ + N I G +T S GIA E I T++ RAD +Y AK++G Sbjct: 721 AYQLALSLREGLRNQVIE---GVDQVVTASFGIASWRAGEGIDTMLLRADSGVYAAKQAG 777 Query: 252 RNRV 255 R+RV Sbjct: 778 RDRV 781 >gi|331663017|ref|ZP_08363927.1| putative GGDEF domain protein [Escherichia coli TA143] gi|331058816|gb|EGI30793.1| putative GGDEF domain protein [Escherichia coli TA143] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|331645556|ref|ZP_08346660.1| protein AdrA [Escherichia coli M605] gi|330910177|gb|EGH38687.1| protein YaiC [Escherichia coli AA86] gi|331045718|gb|EGI17844.1| protein AdrA [Escherichia coli M605] Length = 371 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|229492096|ref|ZP_04385906.1| diguanylate cyclase [Rhodococcus erythropolis SK121] gi|229320993|gb|EEN86804.1| diguanylate cyclase [Rhodococcus erythropolis SK121] Length = 361 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 31/213 (14%) Query: 67 ENLSLVIISITISLLLGYIS----GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 E L+ ++S +S+ + ++ G++ + L +S R +L+ D L+GL N F+ + Sbjct: 124 EGLASALVSCAVSVAVIWLPVFMIGTLRRSLEVSRARYRELANTDPLTGLPNRRGFLDRV 183 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 Y + + + D+D+FKQIND+ GH GD V+ + GT + VGR Sbjct: 184 ERYTRENSSSASEVGFLVIDVDHFKQINDHLGHAAGDDVLNEVVAATRRAVGTDVLVGRF 243 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENS-QINIS----------SGPSIHITISAGI 224 GGEEF A S+ E LA +R + +S + +S GP+ +T+ Sbjct: 244 GGEEFVACFPASNFDEVVTLAESIRSAVADSCDVTVSIGGIFCAVDDHGPAPSMTL---- 299 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 E + + RAD +Y AK +GR+ V C Sbjct: 300 -----NEFVDVLTCRADTLMYAAKAAGRDTVRC 327 >gi|26247800|ref|NP_753840.1| hypothetical protein c1945 [Escherichia coli CFT073] gi|227886093|ref|ZP_04003898.1| possible diguanylate cyclase [Escherichia coli 83972] gi|301050222|ref|ZP_07197114.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1] gi|306813485|ref|ZP_07447675.1| putative diguanylate cyclase [Escherichia coli NC101] gi|331657518|ref|ZP_08358480.1| putative GGDEF domain protein [Escherichia coli TA206] gi|26108202|gb|AAN80402.1|AE016760_261 Hypothetical protein yneF [Escherichia coli CFT073] gi|222033262|emb|CAP76002.1| Uncharacterized protein yneF [Escherichia coli LF82] gi|227837022|gb|EEJ47488.1| possible diguanylate cyclase [Escherichia coli 83972] gi|300298047|gb|EFJ54432.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1] gi|305853230|gb|EFM53670.1| putative diguanylate cyclase [Escherichia coli NC101] gi|307553524|gb|ADN46299.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli ABU 83972] gi|312946100|gb|ADR26927.1| predicted diguanylate cyclase [Escherichia coli O83:H1 str. NRG 857C] gi|315297465|gb|EFU56744.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3] gi|331055766|gb|EGI27775.1| putative GGDEF domain protein [Escherichia coli TA206] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|77361836|ref|YP_341411.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis TAC125] gi|76876747|emb|CAI87969.1| conserved protein of unknown function ; putative GGDEF domain protein [Pseudoalteromonas haloplanktis TAC125] Length = 621 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/181 (36%), Positives = 94/181 (51%), Gaps = 15/181 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQI 142 L+EL + QL+ D L+G+ N F L S E+ LS++ DID FK I Sbjct: 434 LRELEEKNRELEQLNMEDPLTGIKNRRFFDKKLVMELRRSRREQTPLSVIMLDIDKFKVI 493 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD+VI +D + P+ V R GGEEF + A +A +R Sbjct: 494 NDTYGHLTGDQVIRTAADTIKKQLQRPLDEVARYGGEEFVVLLPNTQNDGAIAIAEKIRH 553 Query: 202 IIENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + +++ +G +I TISAG +AE + I T RAD+ALY AK+ GRN+V+ Sbjct: 554 AIATNNVHV-AGTTISFTISAGVYTSVAEDINNPEIFT--ERADKALYFAKQHGRNQVIN 610 Query: 258 F 258 F Sbjct: 611 F 611 >gi|34556843|ref|NP_906658.1| hypothetical protein WS0414 [Wolinella succinogenes DSM 1740] gi|34482558|emb|CAE09558.1| conserved hypothetical protein [Wolinella succinogenes] Length = 431 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 13/169 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ ++ D L+G+ N F I S N S++ D+D FK IND GH Sbjct: 268 QKLEHIAHTDTLTGVWNRYKFNKILRQEIKCAKSSNHPFSLMLLDVDRFKTINDTHGHQF 327 Query: 151 GDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ ++ L + R GGEEF A G +A LA LR IE + Sbjct: 328 GDRVLKAITSTLKRQLKHKEAMIARWGGEEFIVLAQGYRLAQALELAERLRAAIEGMEFE 387 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +I IT S G+ E ++ + T++ RAD ALY AK+SGRNR++ + Sbjct: 388 -----NIPITSSFGVTEFSPEDELDTLVRRADLALYTAKESGRNRIISY 431 >gi|302340439|ref|YP_003805645.1| 7TM domain sensor diguanylate cyclase [Spirochaeta smaragdinae DSM 11293] gi|301637624|gb|ADK83051.1| 7TM domain sensor diguanylate cyclase [Spirochaeta smaragdinae DSM 11293] Length = 589 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/171 (39%), Positives = 93/171 (54%), Gaps = 15/171 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISS-LGSY------NEKLSIVFFDIDYFKQINDNFGHPV 150 R+ +LSRID L+ + N F G + N LS++ D+D+FK NDN+GHP Sbjct: 406 QRLERLSRIDPLTEIPNRRYFEEVYTGEWRRSERENLPLSLIMMDVDFFKAYNDNYGHPT 465 Query: 151 GD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD K IA L + + FV R GGEEF G + AA +A LR+ I++ Sbjct: 466 GDVCLKKIATLVQESLKRGED--FVARYGGEEFIILLPGHPLESAAKVAERLRQGIQDLN 523 Query: 208 I-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 I + S + +T+S GIAE+ + I ++ ADQALY AK+SGRNRV Sbjct: 524 IVHAYSEVASVVTVSLGIAEKHIRPGIDRGILVKLADQALYSAKRSGRNRV 574 >gi|313618170|gb|EFR90254.1| ggdef domain-containing protein [Listeria innocua FSL S4-378] Length = 367 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 11/167 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 + Q + +D L+GL N F + + LS++ DIDYFK++ND +GH VG Sbjct: 192 ELQQSTILDPLTGLTNFRHFEKTFEAAFHYATLKKSNLSLIIIDIDYFKRVNDTYGHLVG 251 Query: 152 DKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 252 NGVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPI 311 Query: 211 SSGPSIHITISAGIAERCHKE-P-ISTIIYRADQALYVAKKSGRNRV 255 ++ S+ ITISAGIA K P + +++ ADQALY AK++GRN+V Sbjct: 312 ATTGSV-ITISAGIANYDGKNYPNANELMHAADQALYNAKRNGRNQV 357 >gi|120612291|ref|YP_971969.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gi|120590755|gb|ABM34195.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 357 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 22/235 (9%) Query: 40 ATVIFIANIFLFYIGL----------TPFYGLEYILVENLSLVIISITISLLLGYISGSI 89 AT + + +F+FY+G+ P L + ++ ++ + Y GS+ Sbjct: 126 ATPVMLFALFVFYVGMYEFSRRHGAQAPLDPLGQSIAHAFNVAVVFAMAAYTARYYYGSV 185 Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 L+ + R+ + + D L+GL N I+ + + S+V DID+FK+I Sbjct: 186 LR----AERRLEEQACTDPLTGLSNRRRLAGLAQERIAQARAAGQPTSVVIADIDHFKRI 241 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GD+V+ +++ + + R GGEEF +A LA +R I Sbjct: 242 NDTHGHEAGDQVLVHVAELMERSSRAHDLLARWGGEEFLLVMPSCGLGDAQALAERMRAI 301 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + +I ++S G+A+ E + I RADQALY +K++GRNRV Sbjct: 302 VAGHPARRDT-QAIPASLSLGVAQLRGGESLEAAIARADQALYASKEAGRNRVTT 355 >gi|83718387|ref|YP_440550.1| GGDEF domain-containing protein [Burkholderia thailandensis E264] gi|167579235|ref|ZP_02372109.1| GGDEF domain protein [Burkholderia thailandensis TXDOH] gi|167617358|ref|ZP_02385989.1| GGDEF domain protein [Burkholderia thailandensis Bt4] gi|257141212|ref|ZP_05589474.1| GGDEF domain-containing protein [Burkholderia thailandensis E264] gi|83652212|gb|ABC36276.1| GGDEF domain protein [Burkholderia thailandensis E264] Length = 311 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 11/180 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 + +E + ++ + + D L+G+ N F S Y LS++ FD+D+FK Sbjct: 134 MQREREEAVAKLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKA 193 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH VGD V+ ++ ++ V T GR GGEEFA +S EA +A +R+ Sbjct: 194 INDRFGHVVGDNVLRVMAQRVADVVRTQDTFGRFGGEEFALLLPCTSLDEAMHVAEKIRQ 253 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259 I N+ I + G + +T S G A H ++ T++ AD ALY AK+ GRN V F Sbjct: 254 TIGNTPIE-AEGVRVPVTASVGGAA-AHVGALTHETLVNEADAALYRAKRQGRNCSVAFG 311 >gi|50120615|ref|YP_049782.1| hypothetical protein ECA1681 [Pectobacterium atrosepticum SCRI1043] gi|49611141|emb|CAG74587.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 442 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/130 (40%), Positives = 73/130 (56%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N LSI DID+FK +ND +GH GD ++ +++ L +V R GGEEF + Sbjct: 308 NTPLSIAMIDIDHFKSVNDTYGHAAGDNILKRIAEILYESTRNSDYVFRYGGEEFLIVLI 367 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 + + A + LRK IEN I++ +G S+ +TISAGIA +I AD ALY Sbjct: 368 ETPKVAAHTIIERLRKKIENHFIHLQNGESVKMTISAGIAVYSGHPDYECLIKAADDALY 427 Query: 246 VAKKSGRNRV 255 AK +GRNR+ Sbjct: 428 QAKANGRNRI 437 >gi|295699214|ref|YP_003607107.1| diguanylate cyclase [Burkholderia sp. CCGE1002] gi|295438427|gb|ADG17596.1| diguanylate cyclase [Burkholderia sp. CCGE1002] Length = 381 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 113/214 (52%), Gaps = 28/214 (13%) Query: 65 LVENLSLVIISIT--ISLLLGYISGSILK--ELFISYNRISQ----LSRIDCLSGLLNHS 116 L+E SL+ +S+ + L LG ++ L + ++++R+++ L+ +D L+G L+ Sbjct: 174 LLEQASLMQVSMPNIVFLALGILAPPFLSIGVVMLAHDRLAERLERLANVDDLTGALSRR 233 Query: 117 AFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVV- 164 AFI G+ ++I DID FK +ND GH GD+V+ AF++ +L + Sbjct: 234 AFIEIGGALLNASLRTGSPVAIAIVDIDSFKAVNDTHGHAAGDQVLTHFAAFVARELRIG 293 Query: 165 -VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 VFG RLGGEEF +S EA +L LR + + + + T S G Sbjct: 294 DVFG------RLGGEEFGVLCPATSAAEAVVLLERLRARLA-ATVPDERPRGLRYTFSVG 346 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + ++ E ++ ++ RAD+ALY AK +GR+RV+ Sbjct: 347 VDQQRRGESLAQLMARADRALYAAKAAGRDRVMA 380 >gi|251794742|ref|YP_003009473.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. JDR-2] gi|247542368|gb|ACS99386.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. JDR-2] Length = 324 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 84/175 (48%), Gaps = 12/175 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143 +EL ++ L+ D L+GL N F L Y E LS+ DID FK IN Sbjct: 152 QELLDLNEKLEALASTDPLTGLKNRRYFQEQLQKYTELSEQTEAALSLCIVDIDRFKSIN 211 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GHPVGD V+ L+ L V R GGEEF +++A + A R Sbjct: 212 DTYGHPVGDLVLTRLAQLLQEQSPDGAVVARFGGEEFVILLPELDQEQALVAAERYRAAT 271 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 E + + + ITIS G A E +++ +ADQALY +K +GRNRV + Sbjct: 272 ETTPLG-----DLRITISIGTATFAAAETELSLLQQADQALYHSKNNGRNRVTHY 321 >gi|187926309|ref|YP_001892654.1| diguanylate cyclase with GAF sensor [Ralstonia pickettii 12J] gi|241665797|ref|YP_002984156.1| diguanylate cyclase [Ralstonia pickettii 12D] gi|187728063|gb|ACD29227.1| diguanylate cyclase with GAF sensor [Ralstonia pickettii 12J] gi|240867824|gb|ACS65484.1| diguanylate cyclase with GAF sensor [Ralstonia pickettii 12D] Length = 348 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 96/186 (51%), Gaps = 17/186 (9%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134 L SIL EL I+ + S D + G+ N A + L Y + LS++ Sbjct: 163 LSETQRSILTELQIARHE----SLTDPMLGIWNRRAAMELLTRECGHAMRYGQPLSLLVV 218 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+D+FK++ND +GHPVGD V+ ++ L V VGR GGEEF ++ +A+ Sbjct: 219 DVDHFKRVNDTYGHPVGDAVLVEIARTLRVNSRPIDAVGRYGGEEFLVVLPDTTTLQASD 278 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKS 250 +A LR +E+ +I +I +IS G+A C E + +I RAD AL AK+ Sbjct: 279 IAERLRSAVESLEIATPEA-NIRSSISVGLAS-CEPEKNLCTPTDLIMRADAALLAAKRL 336 Query: 251 GRNRVV 256 GRNRV+ Sbjct: 337 GRNRVI 342 >gi|89093635|ref|ZP_01166582.1| putative signal transduction protein [Oceanospirillum sp. MED92] gi|89082031|gb|EAR61256.1| putative signal transduction protein [Oceanospirillum sp. MED92] Length = 478 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 10/176 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ Q S D L+GL N F S YN+ L+++ DID FKQIND FGH Sbjct: 294 RRLYQRSVTDSLTGLYNRQHFKFRAEQEASRAVRYNQPLTMLMIDIDQFKQINDKFGHQT 353 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ S + +GR GGEEF S ++A A+ +R ++ S I I Sbjct: 354 GDTVLQQASQYIRDNLRESDLLGRYGGEEFIVLLPQSDLEQATQCADRIRDSLDKS-IFI 412 Query: 211 SSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G + I++S G+A++ + ++ +ADQALY AK++GRNR+ ++ E + Sbjct: 413 -YGSLVSISVSVGLAQQSPDTFVYDELVSQADQALYTAKRNGRNRIEIYAATEEGS 467 >gi|331673049|ref|ZP_08373826.1| putative GGDEF domain protein [Escherichia coli TA280] gi|284921409|emb|CBG34477.1| putative signal transduction protein [Escherichia coli 042] gi|331069828|gb|EGI41206.1| putative GGDEF domain protein [Escherichia coli TA280] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|91209450|ref|YP_539436.1| diguanylate cyclase AdrA [Escherichia coli UTI89] gi|110640646|ref|YP_668374.1| diguanylate cyclase AdrA [Escherichia coli 536] gi|117622648|ref|YP_851561.1| diguanylate cyclase AdrA [Escherichia coli APEC O1] gi|218557295|ref|YP_002390208.1| diguanylate cyclase AdrA [Escherichia coli S88] gi|237707626|ref|ZP_04538107.1| diguanylate cyclase AdrA [Escherichia sp. 3_2_53FAA] gi|306813149|ref|ZP_07447342.1| diguanylate cyclase AdrA [Escherichia coli NC101] gi|91071024|gb|ABE05905.1| hypothetical protein UTI89_C0404 [Escherichia coli UTI89] gi|110342238|gb|ABG68475.1| hypothetical protein YaiC [Escherichia coli 536] gi|115511772|gb|ABI99846.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218364064|emb|CAR01729.1| putative diguanylate cyclase [Escherichia coli S88] gi|222032181|emb|CAP74920.1| Uncharacterized protein yaiC [Escherichia coli LF82] gi|226898836|gb|EEH85095.1| diguanylate cyclase AdrA [Escherichia sp. 3_2_53FAA] gi|294490300|gb|ADE89056.1| MASE2 domain/diguanylate cyclase [Escherichia coli IHE3034] gi|305853912|gb|EFM54351.1| diguanylate cyclase AdrA [Escherichia coli NC101] gi|307628147|gb|ADN72451.1| diguanylate cyclase AdrA [Escherichia coli UM146] gi|312944962|gb|ADR25789.1| diguanylate cyclase AdrA [Escherichia coli O83:H1 str. NRG 857C] gi|315289812|gb|EFU49202.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3] gi|323953003|gb|EGB48871.1| diguanylate cyclase domain-containing protein [Escherichia coli H252] gi|323958578|gb|EGB54281.1| diguanylate cyclase domain-containing protein [Escherichia coli H263] gi|324010735|gb|EGB79954.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1] Length = 371 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|16128370|ref|NP_414919.1| diguanylate cyclase for cellulose, biofilm, motility regulation [Escherichia coli str. K-12 substr. MG1655] gi|26246387|ref|NP_752426.1| diguanylate cyclase AdrA [Escherichia coli CFT073] gi|89107256|ref|AP_001036.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr. W3110] gi|170021242|ref|YP_001726196.1| diguanylate cyclase AdrA [Escherichia coli ATCC 8739] gi|170079972|ref|YP_001729292.1| diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B] gi|170683904|ref|YP_001742518.1| diguanylate cyclase AdrA [Escherichia coli SMS-3-5] gi|194438882|ref|ZP_03070967.1| MASE2 domain/diguanylate cyclase [Escherichia coli 101-1] gi|209917597|ref|YP_002291681.1| diguanylate cyclase AdrA [Escherichia coli SE11] gi|218703667|ref|YP_002411186.1| diguanylate cyclase AdrA [Escherichia coli UMN026] gi|227884611|ref|ZP_04002416.1| possible diguanylate cyclase [Escherichia coli 83972] gi|238899675|ref|YP_002925471.1| putative diguanylate cyclase [Escherichia coli BW2952] gi|253774633|ref|YP_003037464.1| diguanylate cyclase AdrA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160451|ref|YP_003043559.1| diguanylate cyclase AdrA [Escherichia coli B str. REL606] gi|256023997|ref|ZP_05437862.1| diguanylate cyclase AdrA [Escherichia sp. 4_1_40B] gi|293403503|ref|ZP_06647594.1| adrA [Escherichia coli FVEC1412] gi|293408528|ref|ZP_06652367.1| adrA [Escherichia coli B354] gi|293413636|ref|ZP_06656285.1| adrA [Escherichia coli B185] gi|297517446|ref|ZP_06935832.1| diguanylate cyclase AdrA [Escherichia coli OP50] gi|298379114|ref|ZP_06988995.1| adrA [Escherichia coli FVEC1302] gi|300900442|ref|ZP_07118612.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1] gi|300903354|ref|ZP_07121282.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|300930324|ref|ZP_07145736.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] gi|300947970|ref|ZP_07162115.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1] gi|300988117|ref|ZP_07178554.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1] gi|301301529|ref|ZP_07207664.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1] gi|307137027|ref|ZP_07496383.1| diguanylate cyclase AdrA [Escherichia coli H736] gi|331640900|ref|ZP_08342035.1| protein AdrA [Escherichia coli H736] gi|331651313|ref|ZP_08352338.1| protein AdrA [Escherichia coli M718] gi|331661758|ref|ZP_08362681.1| protein AdrA [Escherichia coli TA143] gi|77416708|sp|P0AAP2|ADRA_ECOL6 RecName: Full=Protein AdrA gi|77416709|sp|P0AAP1|ADRA_ECOLI RecName: Full=Probable diguanylate cyclase AdrA; Short=DGC gi|26106785|gb|AAN78970.1|AE016756_153 Hypothetical protein yaiC [Escherichia coli CFT073] gi|1657581|gb|AAB18109.1| also previously sequenced by another group, GenBank Accession Number hypothetical protein in phoA 3' region [Escherichia coli str. K-12 substr. MG1655] gi|1786584|gb|AAC73488.1| diguanylate cyclase for cellulose, biofilm, motility regulation [Escherichia coli str. K-12 substr. MG1655] gi|85674526|dbj|BAE76166.1| predicted diguanylate cyclase [Escherichia coli str. K12 substr. W3110] gi|169756170|gb|ACA78869.1| diguanylate cyclase [Escherichia coli ATCC 8739] gi|169887807|gb|ACB01514.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B] gi|170521622|gb|ACB19800.1| MASE2 domain/diguanylate cyclase [Escherichia coli SMS-3-5] gi|194422176|gb|EDX38178.1| MASE2 domain/diguanylate cyclase [Escherichia coli 101-1] gi|209910856|dbj|BAG75930.1| conserved hypothetical protein [Escherichia coli SE11] gi|218430764|emb|CAR11638.1| putative diguanylate cyclase [Escherichia coli UMN026] gi|227838697|gb|EEJ49163.1| possible diguanylate cyclase [Escherichia coli 83972] gi|238862236|gb|ACR64234.1| predicted diguanylate cyclase [Escherichia coli BW2952] gi|242376162|emb|CAQ30853.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)] gi|253325677|gb|ACT30279.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972352|gb|ACT38023.1| predicted diguanylate cyclase [Escherichia coli B str. REL606] gi|253976561|gb|ACT42231.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)] gi|260450427|gb|ACX40849.1| diguanylate cyclase [Escherichia coli DH1] gi|281177556|dbj|BAI53886.1| conserved hypothetical protein [Escherichia coli SE15] gi|284920192|emb|CBG33251.1| putative signal transduction protein [Escherichia coli 042] gi|291429356|gb|EFF02376.1| adrA [Escherichia coli FVEC1412] gi|291433694|gb|EFF06667.1| adrA [Escherichia coli B185] gi|291471706|gb|EFF14189.1| adrA [Escherichia coli B354] gi|298280227|gb|EFI21731.1| adrA [Escherichia coli FVEC1302] gi|300356088|gb|EFJ71958.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1] gi|300404649|gb|EFJ88187.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|300407531|gb|EFJ91069.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1] gi|300452469|gb|EFK16089.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1] gi|300461784|gb|EFK25277.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] gi|300843026|gb|EFK70786.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1] gi|307552290|gb|ADN45065.1| putative transmembrane protein [Escherichia coli ABU 83972] gi|309700647|emb|CBI99943.1| putative signal transduction protein [Escherichia coli ETEC H10407] gi|315135068|dbj|BAJ42227.1| adrA [Escherichia coli DH1] gi|315256206|gb|EFU36174.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1] gi|315294145|gb|EFU53496.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1] gi|323938570|gb|EGB34819.1| diguanylate cyclase domain-containing protein [Escherichia coli E1520] gi|323963371|gb|EGB58933.1| diguanylate cyclase domain-containing protein [Escherichia coli H489] gi|331037698|gb|EGI09918.1| protein AdrA [Escherichia coli H736] gi|331051054|gb|EGI23106.1| protein AdrA [Escherichia coli M718] gi|331060180|gb|EGI32144.1| protein AdrA [Escherichia coli TA143] Length = 371 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|315636644|ref|ZP_07891877.1| GGDEF/HAMP domain protein [Arcobacter butzleri JV22] gi|315479070|gb|EFU69770.1| GGDEF/HAMP domain protein [Arcobacter butzleri JV22] Length = 581 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 11/176 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 +EL + + +LS D L+ L N SL YN+ SI+ DIDYFK++N Sbjct: 407 EELLVKNAELLKLSITDNLTKLYNRVKLDKSLQDEINRSQRYNKNFSIILLDIDYFKKVN 466 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 DNFGH +GD+V+ + L +GR GGEEF + ++A +A+ + I Sbjct: 467 DNFGHQIGDEVLIESAQVLSKNIRNVDILGRWGGEEFLVICPETKIEDAIKVASHINAAI 526 Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + ++ P+ ITIS G+A H + + II AD+ALY AK+ GR++V+ F Sbjct: 527 KLHK--FTTYPNT-ITISLGVATFSKHIKNVDDIILNADKALYQAKEEGRDKVIAF 579 >gi|301049579|ref|ZP_07196532.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1] gi|300298648|gb|EFJ55033.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1] Length = 374 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|218700143|ref|YP_002407772.1| putative membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia coli IAI39] gi|218370129|emb|CAR17917.1| putative membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia coli IAI39] Length = 472 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|187935043|ref|YP_001887408.1| ggdef domain protein [Clostridium botulinum B str. Eklund 17B] gi|187723196|gb|ACD24417.1| ggdef domain protein [Clostridium botulinum B str. Eklund 17B] Length = 695 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 9/173 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL------SIVFFDIDYFKQINDNFGH 148 ++N + ++ D L+G+ N + ++ +N KL SI+ D+DYFKQIND +GH Sbjct: 522 TFNTVEHFAKYDSLTGMFNRNVILTQGERIFNNKLETKQTFSIIMIDVDYFKQINDRYGH 581 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD V+ +S + +GR GGEEF + +EA +A+ +RK +EN + Sbjct: 582 DIGDIVLRDISSIIKSEIRNTDSLGRYGGEEFLILLPNINLEEAKKIADRIRKSVENYKY 641 Query: 209 N-ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 + ++S +T+S G+ E E + +AD+ALY+AK GRNR + +S Sbjct: 642 HYLTSEKHNRVTLSLGVYEFNKNEFDFFEGVKKADKALYMAKSLGRNRAIEYS 694 >gi|221065958|ref|ZP_03542063.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni KF-1] gi|220710981|gb|EED66349.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni KF-1] Length = 442 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 89/168 (52%), Gaps = 16/168 (9%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL+N F +L S + LS++ D+D+FKQ+ND+FGHP GD+V+ + Sbjct: 278 DALTGLVNRRRFDEALESEWRRAHRSETALSLLLLDVDHFKQLNDSFGHPFGDEVLKCFA 337 Query: 160 DQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 L V V R GGEEFA G+ AA LA +R+ +E + + I Sbjct: 338 GLLAHCVQRAGSLVSRYGGEEFAILLPGTGLSGAARLAEFIRQQVEALSLGNQQTGLVQI 397 Query: 219 TISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRVVCFSDI 261 T+S G+A C P S++I AD+ALY AK+ GRN VC + + Sbjct: 398 TVSVGVA--CASGPALDSSCSSLIDMADRALYEAKRKGRN-SVCLAGV 442 >gi|307946775|ref|ZP_07662110.1| signal transduction protein ggdef domain protein [Roseibium sp. TrichSKD4] gi|307770439|gb|EFO29665.1| signal transduction protein ggdef domain protein [Roseibium sp. TrichSKD4] Length = 250 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 101/186 (54%), Gaps = 4/186 (2%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKLSI 131 II+ I++ + ++ +I+K + + ++ + D L+G+L S F+ + +++ ++ Sbjct: 51 IIASLIAVPISIVALNIVKTVNKAVAKLEDFVKFDQLTGVLARSYFLEPVRQRFSDGGAL 110 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 D D+FKQIND +GH VGD + + L VGR+GGEEFA G +QE Sbjct: 111 FLVDADHFKQINDTYGHDVGDMALRLIGQTLNFNVRKSDLVGRVGGEEFAIFLKGVGDQE 170 Query: 192 AAILANDLRK-IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 A +R I EN + + +G I++T+S GIA+ ++ I AD+ LY AK + Sbjct: 171 IVTRAEQIRTAIAENGK--VIAGHEINLTVSIGIAKIKKGSTLTLIFKEADENLYSAKNA 228 Query: 251 GRNRVV 256 GRN+ V Sbjct: 229 GRNQFV 234 >gi|301025468|ref|ZP_07189015.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] gi|331656437|ref|ZP_08357399.1| protein AdrA [Escherichia coli TA206] gi|300395983|gb|EFJ79521.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] gi|315299614|gb|EFU58862.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3] gi|323976135|gb|EGB71228.1| diguanylate cyclase domain-containing protein [Escherichia coli TW10509] gi|331054685|gb|EGI26694.1| protein AdrA [Escherichia coli TA206] Length = 371 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVMLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|119945517|ref|YP_943197.1| diguanylate cyclase [Psychromonas ingrahamii 37] gi|119864121|gb|ABM03598.1| diguanylate cyclase [Psychromonas ingrahamii 37] Length = 298 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 14/163 (8%) Query: 102 QLSRIDCLSGLLNHSAF------ISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GLLN ++ + N +++F DID+FK++ND +GHP GDKV Sbjct: 136 RLATTDPLTGLLNRRELQVQAQKVTHQAARNLSTFALLFIDIDFFKRVNDTYGHPAGDKV 195 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L++ L V R+GGEEFA E+ A LA LRK IE I+ Sbjct: 196 LICLANILTQERRVTDIVARMGGEEFALLLPNIDEENAYKLAERLRKKIEKQTID----- 250 Query: 215 SIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I IT+S G + + + ++ ADQALY +K+ GRNR Sbjct: 251 HIKITVSIGLVVTRKNTQTNFDILLELADQALYESKEWGRNRT 293 >gi|37676120|ref|NP_936516.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|37200661|dbj|BAC96486.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 348 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 85/155 (54%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LS L N AF S L + + LS++ DID+FK NDN+GH GD VI ++ +L Sbjct: 192 DGLSTLYNRRAFDSDLKALVNAQQNLSLILLDIDHFKTFNDNYGHLFGDSVIRAIAKRLQ 251 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + R GGEEFA S + A A LR+ IE ++ + SG + +I+ S Sbjct: 252 TSCREGIAAYRFGGEEFALIVPNKSLRIARQYAESLRRTIEKLKVKDKRSGQQVENISAS 311 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE E ++I RAD+ LY AK+ GRNRV+ Sbjct: 312 FGVAELKPDETAESLIERADKLLYEAKQLGRNRVM 346 >gi|16264252|ref|NP_437044.1| hypothetical protein SM_b20523 [Sinorhizobium meliloti 1021] gi|15140377|emb|CAC48904.1| diguanylate cyclase signal peptide [Sinorhizobium meliloti 1021] Length = 402 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 99/195 (50%), Gaps = 17/195 (8%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 +++I+ +++L G ++K++ + R S S ID LSGL N F S + L Sbjct: 196 AMLIVGTGVAML-----GVVVKDV-VDEARAS--SEIDALSGLCNRRGFSSRVAPLLRDL 247 Query: 130 S------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 S ++ DID FK +ND FGH GD+VI S L V GR+GGEEFA Sbjct: 248 SDHDVGTLILADIDRFKLVNDTFGHHTGDEVIREFSHILADVMPHRAVAGRVGGEEFAIF 307 Query: 184 ALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 +A ++AN +R + +IN + G + +T S G++ E + + RAD Sbjct: 308 LPRVGLADARVVANGIRSELAVKRINGLPEG--VAVTASFGVSAVAAGELLDAAMRRADN 365 Query: 243 ALYVAKKSGRNRVVC 257 +LY AK GRNRV C Sbjct: 366 SLYAAKAGGRNRVEC 380 >gi|188492292|ref|ZP_02999562.1| AdrA protein [Escherichia coli 53638] gi|188487491|gb|EDU62594.1| AdrA protein [Escherichia coli 53638] Length = 236 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 41 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 99 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 100 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 159 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 160 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 210 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 211 REWLKSADLALYKAKKAGRNRT 232 >gi|332715768|ref|YP_004443234.1| diguanylate cyclase with GAF sensor [Agrobacterium sp. H13-3] gi|325062453|gb|ADY66143.1| diguanylate cyclase with GAF sensor [Agrobacterium sp. H13-3] Length = 592 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 4/163 (2%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDK 153 R+ ++R D L+GLLN + +L + EK L+ + DID+FK+ ND FGH GD Sbjct: 422 QRLVGMARQDALTGLLNRRSLDETLNRHIEKPTNSLACLMLDIDHFKRFNDRFGHDAGDA 481 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ +++ L G + R GGEEF ++A +A LR +E + Sbjct: 482 VMQYVAQVLSEAVGDLGELFRFGGEEFTVLMPAGGIEDAIKVAEKLRHAVERAPFTYRGR 541 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ITIS GIA +S+++ RAD AL AK++GRN+ V Sbjct: 542 LLDSITISIGIATSPGAGTVSSVLERADAALLSAKQTGRNKWV 584 >gi|77456278|ref|YP_345783.1| putative diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gi|77380281|gb|ABA71794.1| conserved GGDEF domain protein [Pseudomonas fluorescens Pf0-1] Length = 696 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ I+ + LS+ D+D+FK+INDN+GH GDKV Sbjct: 534 QKALIDPLTGLPNRAAWTERLEHEIAQWQQHGNTLSLAMLDLDHFKRINDNYGHLAGDKV 593 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L F+ R GGEEF + A L +LR IE + G Sbjct: 594 LKIIATVLRKRMRGNDFIARFGGEEFVLLLPATPPAVGAKLLENLRASIEACPFHF-KGE 652 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ITIS G+A E ++ RADQALY AK +GRNRV Sbjct: 653 RVTITISMGLAAFRPGEHSDLVLKRADQALYRAKNAGRNRV 693 >gi|229136232|ref|ZP_04264981.1| GGDEF domain protein [Bacillus cereus BDRD-ST196] gi|228647212|gb|EEL03298.1| GGDEF domain protein [Bacillus cereus BDRD-ST196] Length = 343 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 18/230 (7%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI---SGSILKE 92 SIF + F N++ I + P Y IL +++ +V + + ++ Y+ S S + + Sbjct: 118 SIFTKWIWF--NVYSLSILILPLY----ILFKDIYVVALYLVCCIVAAYVTFVSASYVLQ 171 Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 + + + ID L+ L N F I S N+ L ++ DID+FK +ND Sbjct: 172 SNELFQTMKHYATIDALTNLGNVRKFDFEMNRHIGSKHMKNDSLCLLLIDIDHFKYVNDT 231 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GHP GD+V+ L L+ P V R GGEEFA + +R +E Sbjct: 232 YGHPAGDEVLKQLGRILLENAPFPNLVFRKGGEEFALLLPKKRVAFGTRIGEQIRLAVEK 291 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +G I IT+S G++E +K+ I AD ALY +K++GRN+V Sbjct: 292 HSFQLQNGEKIKITVSVGLSE--YKKSPEQFIQSADDALYYSKRNGRNKV 339 >gi|258405556|ref|YP_003198298.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692] gi|257797783|gb|ACV68720.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692] Length = 387 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 15/172 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 E + NR+ L+R D L+ L N F I Y LS++ D+D+FK++ND Sbjct: 207 ESTVQENRL--LARTDFLTDLPNRRGFFEAGAKEIRRAHRYGRPLSVLLLDLDHFKKVND 264 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH VGD V+A + + RLGGEEFA + EA+ +A LR+ +E Sbjct: 265 VYGHDVGDHVLAQFGQKCRGRLREHDLMARLGGEEFAVLLPETPVAEASQVAEGLRRFVE 324 Query: 205 NSQIN--ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253 S + + +G +T+S G+ E +E +S ++ R D ALY+AK++GRN Sbjct: 325 GSSLAGVLEAG---EVTVSIGVCELAPQEDSLSEVLKRVDTALYMAKQAGRN 373 >gi|217077910|ref|YP_002335628.1| ggdef domain protein [Thermosipho africanus TCF52B] gi|217037765|gb|ACJ76287.1| ggdef domain protein [Thermosipho africanus TCF52B] Length = 1338 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 14/164 (8%) Query: 106 IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ L FI L +NEKLS+V D+D+FK+IND +GH +GD+V+ + Sbjct: 1179 LDPLTKLYTRYYFIEKLSQMFRRAIKFNEKLSVVMCDLDHFKKINDTYGHLIGDEVLKKI 1238 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L +GR GGEEF SS ++A +A +RK IE + P + Sbjct: 1239 AQILRRNVRLTDVIGRYGGEEFIIFLPYSSSKQAYEIAERIRKKIE----KLDEFP-FKV 1293 Query: 219 TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 T+S GIA + S +I+ AD ALY AK++GRN+VV F++ Sbjct: 1294 TMSFGIASYPETKVNSPDELIHHADDALYKAKETGRNKVVMFNE 1337 >gi|149183994|ref|ZP_01862363.1| response regulator/sensory box protein/GGDEF domain protein [Bacillus sp. SG-1] gi|148848296|gb|EDL62577.1| response regulator/sensory box protein/GGDEF domain protein [Bacillus sp. SG-1] Length = 462 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 11/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 +++ +L+++D L+ L N AF+ +E + DID+FK ND +GH VGDKV+ + Sbjct: 304 HQLIELAKMDSLTKLANREAFLELYNHNDEAGCFLLMDIDHFKLFNDQYGHLVGDKVLKY 363 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII--ENSQINISSGPS 215 ++ L F + RLGGEEF L +EA+I A+ + + E+SQ++ PS Sbjct: 364 VAQLLKAQFRDAILT-RLGGEEF-GVFLNVDTEEASIRASRFQTSLKEESSQVD----PS 417 Query: 216 I--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VC 257 I +T+S GI EP + RADQA+Y K GR+ + VC Sbjct: 418 IEEEVTVSIGICRAYPGEPFERVYQRADQAMYKVKHEGRDSIHVC 462 >gi|331681777|ref|ZP_08382410.1| protein AdrA [Escherichia coli H299] gi|315616720|gb|EFU97337.1| diguanylate cyclase domain protein [Escherichia coli 3431] gi|323943191|gb|EGB39347.1| diguanylate cyclase domain-containing protein [Escherichia coli E482] gi|323972234|gb|EGB67444.1| diguanylate cyclase domain-containing protein [Escherichia coli TA007] gi|331080979|gb|EGI52144.1| protein AdrA [Escherichia coli H299] Length = 366 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 171 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 290 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362 >gi|261212855|ref|ZP_05927139.1| GGDEF family protein [Vibrio sp. RC341] gi|260837920|gb|EEX64597.1| GGDEF family protein [Vibrio sp. RC341] Length = 327 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 91/180 (50%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 +++ +Y I S D L+GLLN H+ IS + +L I DID+FK I Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAISPTAEESHRLWIAMLDIDHFKAI 191 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+FGH +GD+++ + Q+ FG + R GGEEF +EQE + R Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHFFGHSAQLFRFGGEEFVIIFASGNEQEINRQLDGFRH- 250 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 QI P I ++ SAG + + TI+ AD+ALY AK+ GRN+V C+ ++ Sbjct: 251 ----QIRRHDFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYENL 306 >gi|74318711|ref|YP_316451.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259] gi|74058206|gb|AAZ98646.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus denitrificans ATCC 25259] Length = 570 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 8/164 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFIS-SLGSYNEKL------SIVFFDIDYFKQINDNFGHPVG 151 R QL+++D L+GL N AF + +++ L S++ DID+FKQIND +GH G Sbjct: 397 RAEQLAQLDPLTGLNNRRAFYGMTAAAWSNALRHAHATSVLLLDIDHFKQINDRYGHAEG 456 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ L + R GGEEF + ++AA+LA LR I + Sbjct: 457 DAVLKTVAGALKQSVRQGDVLARWGGEEFIVFLPETGLRDAALLAERLRVSIAALSVTGR 516 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G ++ +T S G+AER + ++I AD L+ +K+ GRNRV Sbjct: 517 VG-TMAVTASIGVAERADHATLDSLIAAADACLFASKQQGRNRV 559 >gi|297562365|ref|YP_003681339.1| diguanylate cyclase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846813|gb|ADH68833.1| diguanylate cyclase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 425 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 108/216 (50%), Gaps = 16/216 (7%) Query: 55 LTPFYGLEYILVENLSL-------VIISITISLLLGYISGSILKELFISYNRISQLSRID 107 L P + E ++V+ + L ++ +++ LL+ + +L + + Y ++ +R D Sbjct: 174 LRPMWDREALIVDAVELCVGVTVAILAHLSLFLLVIAVPPVLLLQRSLMYQQLQMAARTD 233 Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 +GLLN + I+ S + +++ DID+FK++NDN GH GD+V+ ++ Sbjct: 234 PKTGLLNAPTWEQEASVEIARARSSRGRAAVLIIDIDHFKRVNDNHGHLFGDQVLLGVAT 293 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 + +GR GGEEF GS EA A LR + +I + P + ITI Sbjct: 294 TIAQQLRQSDLLGRFGGEEFVVLLPGSDTAEAWRAAERLRSQVGRMEIAVDDVP-VSITI 352 Query: 221 SAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G A H + ++ AD ALY AK++GRNRV Sbjct: 353 SIGAAVIGDHGNDLVELLTAADLALYRAKETGRNRV 388 >gi|224373318|ref|YP_002607690.1| diguanylate cyclase [Nautilia profundicola AmH] gi|223588594|gb|ACM92330.1| diguanylate cyclase [Nautilia profundicola AmH] Length = 463 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 83/166 (50%), Gaps = 11/166 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 + ++S D L+ + N SL S Y LSI+FFDID FK+IND +GH VG Sbjct: 298 ELKKISFYDSLTDIYNRYKIDLSLKSQIELAKKYKIPLSIIFFDIDDFKKINDTYGHKVG 357 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ LS + GR GGEEF + A +AN L+K IE I Sbjct: 358 DEVLIELSKLIKRNIRQTDIFGRWGGEEFIIILPNTDLTTATHIANKLKKAIEEHSFPII 417 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 H+T S G+ E + ++T+ RAD LY AK G+NRV+ Sbjct: 418 K----HLTCSFGVTELKDNDSLNTLTVRADSFLYEAKNKGKNRVIS 459 >gi|152990385|ref|YP_001356107.1| hypothetical protein NIS_0636 [Nitratiruptor sp. SB155-2] gi|151422246|dbj|BAF69750.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 486 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 13/171 (7%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 IS + +++ +D L+GL N F I + LS++ FDID+FK+IND +G Sbjct: 319 ISRIKFEEMATVDKLTGLFNRHKFQEIAEIEIKRSHRHKRPLSVILFDIDHFKKINDTYG 378 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD V+ L+ + + R GGEEF + E++A +A LRK +E+ Sbjct: 379 HDIGDVVLRELAKIIKQNIRKYDYAIRWGGEEFLILTPETDEKQAFAMAEKLRKAVES-- 436 Query: 208 INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + P + +TIS G+A E I I +AD ALY +K GRN+ Sbjct: 437 ---HTFPEVGKVTISLGVASVDPNESIDQAIKKADNALYGSKLGGRNKTTV 484 >gi|283834300|ref|ZP_06354041.1| YaiC/YhcK/ArdA family protein [Citrobacter youngae ATCC 29220] gi|291069828|gb|EFE07937.1| YaiC/YhcK/ArdA family protein [Citrobacter youngae ATCC 29220] Length = 366 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 11/194 (5%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121 LSL ++ I LL ++S + L R+ +S D ++G+ N + + Sbjct: 171 LSLPVLVI-YPLLFAWVSYQAITRLAEHKRRLQVMSTRDGMTGVYNRRHWELLLRNEFDN 229 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 Y +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 230 CRRYQRDATLLIIDIDHFKSINDTWGHDVGDQAIVALTRQLQMTLRGSDVIGRFGGDEFA 289 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240 G+ A + + + + SQ+ +S P + + IS G+A E + A Sbjct: 290 VIMCGTPATSAIAAMSRVHERL--SQLRLSCAPQVALRISVGVAPLTSETEHYREWLKSA 347 Query: 241 DQALYVAKKSGRNR 254 D ALY AK SGRNR Sbjct: 348 DMALYKAKNSGRNR 361 >gi|307154898|ref|YP_003890282.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306985126|gb|ADN17007.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 785 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 16/189 (8%) Query: 84 YISGSILKELFIS--YNRISQ------LSRIDCLSGLLNHSAFISSL-------GSYNEK 128 Y+ I+ I+ +NR+ + L+ +D L+GL N F+ L + Sbjct: 596 YVDKPIIGPELIARIHNRLERTQMRRRLAEVDSLTGLSNRRKFVEDLTRLLKLAQRQKQP 655 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L V D+D+FKQ+ND +GH +GD+V+ L L F +GR GGEEFA G + Sbjct: 656 LCYVLIDLDHFKQVNDKYGHDMGDRVLRQLGKLLKRQFRCEDLIGRWGGEEFALGLYGMN 715 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247 + +A D+ + + ++ +T SAGIA +YR AD ALY A Sbjct: 716 KSQAISRLKDILEQWRQEEFRVTDNHCFCVTFSAGIAMYPTDGAELQNLYRFADVALYRA 775 Query: 248 KKSGRNRVV 256 KK GRN+V+ Sbjct: 776 KKQGRNQVI 784 >gi|242238670|ref|YP_002986851.1| diguanylate cyclase with beta propeller sensor [Dickeya dadantii Ech703] gi|242130727|gb|ACS85029.1| diguanylate cyclase with beta propeller sensor [Dickeya dadantii Ech703] Length = 985 Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 10/165 (6%) Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+ L N F L ++ L++ FDID+FKQIND + H VGDKV+ Sbjct: 812 AREDQLTKLDNRRVFDEQLIRCFEDSQRHDYPLTLAIFDIDHFKQINDRWSHVVGDKVLQ 871 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPS 215 ++D L M + R GGEEF + ++AA + LR + + I+ G S Sbjct: 872 TIADILRNFHQDAMLIARWGGEEFTLLFPRMTVEQAAAVCESLRLALTKADYQTIADGLS 931 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T S G+ + + +I +AD ALY+AK++GRN+VVC+SD Sbjct: 932 --VTASFGLCDSFTAKDSQELIRQADHALYLAKQTGRNKVVCWSD 974 >gi|330974006|gb|EGH74072.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 796 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 18/184 (9%) Query: 87 GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 GS+L F+S R+ Q LS D L+G N F + + + LSI Sbjct: 611 GSVLWHGFVSDITDLKRVEQELRVLSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 670 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ + Sbjct: 671 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGARGAQ 730 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A LA LR+ + N I G +T S GIA E I ++ RAD +Y AK++G Sbjct: 731 AYQLALSLREELRNQAIE---GVDQVVTGSFGIASWREGEGIDEMLLRADSGVYAAKQAG 787 Query: 252 RNRV 255 R+RV Sbjct: 788 RDRV 791 >gi|271502688|ref|YP_003335714.1| PAS/PAC and GAF sensor-containing diguanylate cyclase [Dickeya dadantii Ech586] gi|270346243|gb|ACZ79008.1| diguanylate cyclase with PAS/PAC and GAF sensors [Dickeya dadantii Ech586] Length = 771 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 11/168 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ +++ D L+G+ N A+I ++ + ++ DID+FK++ND +GH VGD Sbjct: 603 KLLEMANTDPLTGIHNRRAYILEAEKCYRNHEKNTALAIIDIDFFKKVNDQYGHHVGDVA 662 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I L++ + T FV RLGGEEF ++ + N +R +EN+ + G Sbjct: 663 ICRLAEIITSKLRTDDFVARLGGEEFGLIMHHANPDNVDTIINGIRTEVENTLFTV-DGY 721 Query: 215 SIHITISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNRVV 256 S H TIS G H K+ + + RAD ALY AK +GRNRVV Sbjct: 722 SFHFTISIGATFIKHRHVQNLKDNFESDMKRADDALYEAKNAGRNRVV 769 >gi|191173526|ref|ZP_03035053.1| MASE2 domain/diguanylate cyclase [Escherichia coli F11] gi|190906235|gb|EDV65847.1| MASE2 domain/diguanylate cyclase [Escherichia coli F11] gi|323191493|gb|EFZ76755.1| diguanylate cyclase domain protein [Escherichia coli RN587/1] Length = 366 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 171 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 290 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362 >gi|213968312|ref|ZP_03396456.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato T1] gi|301383444|ref|ZP_07231862.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato Max13] gi|302060299|ref|ZP_07251840.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato K40] gi|302129936|ref|ZP_07255926.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926950|gb|EEB60501.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato T1] Length = 425 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 11/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N A I++ + S + DID+FK +ND +GHP Sbjct: 255 QKLLEIAHSDTLTGLDNRRAAEHTLERLINTARMAGKPFSFIICDIDHFKSVNDRYGHPA 314 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ L R GGEEF SS ++AA LA +RK +E+ +I Sbjct: 315 GDSVLKSVAAILKHRIRAFDVAARWGGEEFLILVPDSSLKQAAELAERVRKGVESLEIP- 373 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +GP +TIS G+AE E +++I RAD+ LY AK+ GRNRV Sbjct: 374 EAGP---VTISLGVAELSPGETAASLIQRADKVLYQAKRLGRNRV 415 >gi|300936368|ref|ZP_07151296.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] gi|300458474|gb|EFK21967.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] Length = 371 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|253995396|ref|YP_003047460.1| diguanylate cyclase [Methylotenera mobilis JLW8] gi|253982075|gb|ACT46933.1| diguanylate cyclase [Methylotenera mobilis JLW8] Length = 395 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 11/175 (6%) Query: 100 ISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q++ D L+G +N + E L+I+ DID+FK IND +GHP GD Sbjct: 221 VYQMASRDALTGAMNRRRIEEEAVRLRARCIRTGEPLAIMMIDIDFFKSINDRYGHPAGD 280 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ ++D + R GGEEF ++E EA LA LR + ++ ++ Sbjct: 281 KVLRAIADIAQKSIRAEDYFARYGGEEFCMLLTSTTESEALDLAERLR--LAFAEFTLTL 338 Query: 213 GP-SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G ++IT+S G+A+ + ++ AD+ALY AK++GRNRV+ +S + T Sbjct: 339 GKEQLNITVSIGVADSSMVGLEFADMVTAADKALYCAKENGRNRVITYSSMGAGT 393 >gi|28868554|ref|NP_791173.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28851792|gb|AAO54868.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 425 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 11/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N A I++ + S + DID+FK +ND +GHP Sbjct: 255 QKLLEIAHSDTLTGLDNRRAAEHTLERLINTARMAGKPFSFIICDIDHFKSVNDRYGHPA 314 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ L R GGEEF SS ++AA LA +RK +E+ +I Sbjct: 315 GDSVLKSVAAILKHRIRAFDVAARWGGEEFLILVPDSSLKQAAELAERVRKGVESLEIP- 373 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +GP +TIS G+AE E +++I RAD+ LY AK+ GRNRV Sbjct: 374 EAGP---VTISLGVAELSPGETAASLIQRADKVLYQAKRLGRNRV 415 >gi|300997431|ref|ZP_07181771.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1] gi|300304250|gb|EFJ58770.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1] Length = 371 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|296134291|ref|YP_003641538.1| diguanylate cyclase with GAF sensor [Thermincola sp. JR] gi|296032869|gb|ADG83637.1| diguanylate cyclase with GAF sensor [Thermincola potens JR] Length = 574 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 11/175 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +I +L+ D L+ + NH F Y K S++ DIDYFK+ ND FGH Sbjct: 392 YKKIEKLAITDGLTKVYNHRYFYKKFEEEYQRSQRYGCKFSVIMIDIDYFKRFNDEFGHK 451 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + ++ + V R GGEEFA + +A I+A +RK I + Sbjct: 452 AGDTALFTVAKIIKTNTRNIDTVARYGGEEFAILLPETDSGDAKIVAERIRKAISETVFR 511 Query: 210 ISSG-PSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I+ P + +T+S G++ K+P ++ ADQALY +K+ G+NRV +S + Sbjct: 512 IADDKPPVGVTVSIGVSSYPADTKDP-QQVVELADQALYYSKEHGKNRVTVWSQM 565 >gi|167625671|ref|YP_001675965.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167355693|gb|ABZ78306.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 295 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 13/166 (7%) Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L++ D L+GL N S I L + LSI+ D+D+FK +NDN+GH +GDK Sbjct: 134 KLAKTDVLTGLANRLELDSVLSYEIERLKRFQHPLSIIMLDLDHFKTVNDNYGHLLGDKC 193 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ + F VGR GGEEF + A LA R++IE P Sbjct: 194 LINIAKMMKNNFRLIDTVGRWGGEEFLIICPETDFNGAIKLAEKFRRLIEEHIF-----P 248 Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + IT S G+ + T++ RAD+ALY AKK+GRNRV F Sbjct: 249 EVKRITGSLGVTSFIEGDTHETLVNRADKALYKAKKAGRNRVEAFE 294 >gi|24375935|ref|NP_719978.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1] gi|24350920|gb|AAN57422.1|AE015878_4 GGDEF domain protein [Shewanella oneidensis MR-1] Length = 485 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 23/210 (10%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLL 113 L F+G NL+L ++ +TI +L +IS L Y R + ++ D L+G Sbjct: 288 LNTFWG-------NLALSLV-VTIGIL--FISNMTLGR----YQRKLEIMASTDKLTGAA 333 Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N F +K +SI+ DID+FK++ND++GH VGD V+ +++ L Sbjct: 334 NRQVFEEYFHQALDKAKLSQTSISILLIDIDHFKKVNDSYGHSVGDLVLKTVTNLLRSQL 393 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 + R GGEEF AA LA R I ++ ++ G I IT+S G+AE Sbjct: 394 KPQDILCRWGGEEFLVLLPEMDLSRAAELAERFRDSISQRELKVN-GVHIAITVSIGVAE 452 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 EP +I RAD ALY AK++GRN+VV Sbjct: 453 YQKLEPAEDLIKRADLALYQAKEAGRNQVV 482 >gi|320197180|gb|EFW71797.1| Protein YaiC [Escherichia coli WV_060327] Length = 371 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|46198710|ref|YP_004377.1| hypothetical protein TTC0402 [Thermus thermophilus HB27] gi|46196333|gb|AAS80750.1| hypothetical conserved protein [Thermus thermophilus HB27] Length = 367 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 95/205 (46%), Gaps = 21/205 (10%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F L Y+ L V ++ I LL + +E++ + + D L+ L N A Sbjct: 171 FRMLGYVATAFLGQVTVAALILLL------ARFREMYGQTRFWREQALTDTLTRLPNRRA 224 Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 F +S Y S+V D+D FKQIND GH GD+V+ ++ LV Sbjct: 225 FELALTRELSRAERYGTPFSLVLVDLDRFKQINDTLGHDHGDEVLRRVARFLVEGVRRED 284 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 V R GGEEFA + +A LA LR+ +E+ + +T S G+AE Sbjct: 285 VVARWGGEEFALLLPSTRASDALRLAERLRQALEDLDLG--------VTASFGVAEYLPG 336 Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255 E + RADQALY AK+ GRNRV Sbjct: 337 ESEEALFRRADQALYRAKERGRNRV 361 >gi|27367989|ref|NP_763516.1| GGDEF family protein [Vibrio vulnificus CMCP6] gi|320158262|ref|YP_004190640.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] gi|27359562|gb|AAO08506.1|AE016813_258 GGDEF family protein [Vibrio vulnificus CMCP6] gi|319933574|gb|ADV88437.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] Length = 338 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 85/155 (54%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LS L N AF S L + + LS++ DID+FK NDN+GH GD VI ++ +L Sbjct: 182 DGLSTLYNRRAFDSDLKALVNAQQNLSLILLDIDHFKTFNDNYGHLFGDSVIRAIAKRLQ 241 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + R GGEEFA S + A A LR+ IE ++ + SG + +I+ S Sbjct: 242 TSCREGIAAYRFGGEEFALIVPNKSLRIARQYAESLRRTIEKLKVKDKRSGQQVENISAS 301 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE E ++I RAD+ LY AK+ GRNRV+ Sbjct: 302 FGVAELKPDETAESLIERADKLLYEAKQLGRNRVM 336 >gi|50122296|ref|YP_051463.1| putative signaling membrane protein [Pectobacterium atrosepticum SCRI1043] gi|49612822|emb|CAG76272.1| putative signaling membrane protein [Pectobacterium atrosepticum SCRI1043] Length = 532 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 15/170 (8%) Query: 97 YNRISQLS---RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150 + RI +LS D L+GLLN ++ S + +++ + DID+FK++ND +GH + Sbjct: 356 HKRIGKLSLQAHTDPLTGLLNRRGIYENIELILSKSNQVAAIVIDIDHFKRVNDTYGHNI 415 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI L+ + + R GGEEF + + ++AA +A LRK +E + I Sbjct: 416 GDDVIKLLAKNIKQSSRGSDLICRTGGEEFLSLLPDTDMKQAAEIAERLRKKVEKMPLPI 475 Query: 211 SSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVC 257 +ITIS G+ C E I +++ AD ALY AK GRNRVV Sbjct: 476 PE----YITISLGVT--CFIPGTEQIDSVLKTADDALYQAKHEGRNRVVT 519 >gi|119773670|ref|YP_926410.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119766170|gb|ABL98740.1| response regulator receiver protein [Shewanella amazonensis SB2B] Length = 392 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 9/171 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QL+ ID L+G N A + +L ++ DID+FK+IND +GH GD Sbjct: 218 LRQLTTIDPLTGWFNRRALNDIAVREFERSARTSSELGLLVLDIDHFKKINDTYGHVDGD 277 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + +++ ++ ++ R GGEEF GS + LAN LR I++ + + Sbjct: 278 EALKHVTNTCALLLRGYDYLFRFGGEEFVILLPGSDHECTRKLANRLRLKIQSEPVTLGQ 337 Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +TIS G+A+R + + I+ RAD ALY AK+SGR+RV + +E Sbjct: 338 -DRVALTISIGVAQRRERDQSWLQILERADSALYHAKQSGRDRVAFHNGLE 387 >gi|311697298|gb|ADQ00170.1| protein containing diguanylate cyclase, predicted domains [marine bacterium HP15] Length = 690 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 12/170 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++Q + D L+GL+N I Y ++++ DID+FK IND FGH VGD Sbjct: 526 LTQKAHFDQLTGLVNRRFMDELLFNEIERCRRYRNPMTVLLLDIDHFKSINDTFGHDVGD 585 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ +L + V R GGEEF ++ A ++ ++RK +E + ++ Sbjct: 586 RVLEAVASRLKGAVRSVDSVARWGGEEFIVMLAETNLSSALVVGENIRKTVERGEYALNR 645 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +T+S G+++ + + +++ RAD ALY AK+ GRN+VV SD E Sbjct: 646 ----PVTVSIGVSQFKKDDTVDSLLKRADIALYDAKERGRNQVVA-SDPE 690 >gi|75675624|ref|YP_318045.1| response regulator PleD [Nitrobacter winogradskyi Nb-255] gi|74420494|gb|ABA04693.1| response regulator receiver modulated diguanylate cyclase [Nitrobacter winogradskyi Nb-255] Length = 457 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 85/165 (51%), Gaps = 9/165 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N S L + E+ L+++ DIDYFK INDN+GH GD V Sbjct: 290 EMAVTDGLTGLHNRRYMESHLTTLAEQASLRGQSLALMMLDIDYFKAINDNYGHDAGDDV 349 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + ++ R GGEEF + A ++A LR+ I +I G Sbjct: 350 LREFALRIRKAIRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRAIAGEPFSIHKGT 409 Query: 215 S-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I +TIS G++ K EPIS ++ RAD ALY AK GRNRVV Sbjct: 410 KLIKVTISIGLSTLERKGEPISDVVKRADVALYRAKHDGRNRVVA 454 >gi|322831728|ref|YP_004211755.1| diguanylate cyclase [Rahnella sp. Y9602] gi|321166929|gb|ADW72628.1| diguanylate cyclase [Rahnella sp. Y9602] Length = 520 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 95/185 (51%), Gaps = 16/185 (8%) Query: 84 YISGSILKELFIS-----YNRISQLS---RIDCLSGLLNHSAFISSLGSY---NEKLSIV 132 Y S LK + + + RI QLS D ++GLLN F ++ + +++++ Sbjct: 338 YYEASKLKTVMLQGIRLLHQRIEQLSTEAHTDPMTGLLNRRGFYEAVDKQLKESSRVAVI 397 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK++ND FGH VGD+VI L+ ++ + R+GGEEF G+S +A Sbjct: 398 TLDIDHFKKVNDTFGHDVGDRVITQLARHILSNSREGDLLCRMGGEEFLLLLPGASLTQA 457 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251 LA LRK +E Q + +TIS G+ K I + AD+ALY AK G Sbjct: 458 TGLAERLRKQVEMQQFEGAG----QVTISLGVTLFYPGKANIDGALKTADKALYQAKNKG 513 Query: 252 RNRVV 256 RN VV Sbjct: 514 RNCVV 518 >gi|296448104|ref|ZP_06890005.1| diguanylate cyclase [Methylosinus trichosporium OB3b] gi|296254369|gb|EFH01495.1| diguanylate cyclase [Methylosinus trichosporium OB3b] Length = 368 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 87/174 (50%), Gaps = 8/174 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 + EL + +L+ D L+ + F ++L G +LS++ DID+FK+I Sbjct: 190 IDELRATLAETQELNVRDSLTQVYTRRYFDTTLERVVREAGGSGGELSLIMADIDHFKKI 249 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GHP+GD+V+ + + T V R GGEEFA + +A +LA +R Sbjct: 250 NDTHGHPIGDEVLKNFARTMTSHVETKDTVARYGGEEFAIILPATGAAQARLLAERIRSE 309 Query: 203 IENSQINISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E + I G P IT S G+A E + +I RAD LYV+K GRNRV Sbjct: 310 FETKKWAIKGGRPIGRITASFGVARLQPGEGPAGLIQRADAKLYVSKSGGRNRV 363 >gi|218698710|ref|YP_002406339.1| diguanylate cyclase AdrA [Escherichia coli IAI39] gi|218368696|emb|CAR16436.1| putative diguanylate cyclase [Escherichia coli IAI39] Length = 371 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|192292883|ref|YP_001993488.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] gi|192286632|gb|ACF03013.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 345 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 9/180 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140 S + ++ + + +L+ D ++G+ N F+ S Y +S + DIDYFK Sbjct: 145 SDVTDIVRNAEELERLATTDGMTGVYNRRHFLTLADREWSRARRYERPMSFLMIDIDYFK 204 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND FGH VGD++I L+ + RLGGEEFA + +A ++A LR Sbjct: 205 AINDGFGHQVGDEMIVHLARLARDCKRDCDVLARLGGEEFALLLPETDLAQAEVVAERLR 264 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + + + ++S +I T+S G+A + +S ++ ADQALY AK +GRNRV+C + Sbjct: 265 REVAGNALVVASH-AIPATVSIGVATALPSMKDVSDLMKAADQALYDAKHAGRNRVICRA 323 >gi|301647301|ref|ZP_07247116.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] gi|301074547|gb|EFK89353.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] Length = 370 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|260899788|ref|ZP_05908183.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|308110403|gb|EFO47943.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] Length = 337 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 89/155 (57%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LS L N AF + L + N+ ++++ DID+FK NDN+GH GD V+ ++ +L Sbjct: 181 DGLSNLYNRRAFDTDLSMLINANQAMTLILLDIDHFKAFNDNYGHLFGDTVLKAIARRLQ 240 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221 + R GGEEFA S + A A+ LR++IE ++ + SG +H IT S Sbjct: 241 QSCRDGVSAYRFGGEEFALIVPNKSLRIARQYADTLRRMIEKLRVRDKRSGTQVHSITAS 300 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE + + +++ +AD+ LY AK+ GRNRV+ Sbjct: 301 FGVAEFEVGDTVDSLVNKADKQLYEAKQLGRNRVM 335 >gi|163760508|ref|ZP_02167589.1| periplasmic sensor diguanylate cyclase [Hoeflea phototrophica DFL-43] gi|162282123|gb|EDQ32413.1| periplasmic sensor diguanylate cyclase [Hoeflea phototrophica DFL-43] Length = 442 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 8/165 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S+++R D L+GL N AF ++L + E+ +++ DID+FKQ+ND GH GD Sbjct: 264 LSEMARRDELTGLANRRAFEATLPDMMGRAKRFEEQFTLLAIDIDHFKQVNDTHGHAAGD 323 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ ++ V R+GGEEFA + A + A +R+ +E + +++ + Sbjct: 324 EVLRAVARTMMDTMRDGDRVFRVGGEEFAVLLPRTDGAPARLAAERIRQAVEMAPVSLKA 383 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I +T+S G+A S ++ AD ALY AK GRNR++ Sbjct: 384 -TEIAVTVSIGMASTLDFPEKSDLLEAADAALYRAKHEGRNRIIV 427 >gi|148545092|ref|YP_001272462.1| diguanylate cyclase [Lactobacillus reuteri DSM 20016] gi|227364247|ref|ZP_03848342.1| diguanylate cyclase [Lactobacillus reuteri MM2-3] gi|325683449|ref|ZP_08162965.1| diguanylate cyclase [Lactobacillus reuteri MM4-1A] gi|148532126|gb|ABQ84125.1| diguanylate cyclase [Lactobacillus reuteri DSM 20016] gi|227070729|gb|EEI09057.1| diguanylate cyclase [Lactobacillus reuteri MM2-3] gi|324977799|gb|EGC14750.1| diguanylate cyclase [Lactobacillus reuteri MM4-1A] Length = 369 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 9/167 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKV 154 + + S D L+GLLN+ A I+ L + NE +IV DID+FK+IND +GH VG++V Sbjct: 183 LEKESERDDLTGLLNYRALSQEINRLANNNEIHNIVIGALDIDHFKKINDTYGHFVGNEV 242 Query: 155 IAFLS----DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + + S +Q+ F +V R GGEEF S +E L + K N I Sbjct: 243 LNYFSTVFREQIHSAFPKHGYVYRFGGEEFTIVVSNHSLEEVYQLLQSIEKFFNNKSIVT 302 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G + I+ S + +R + E + T + RAD+ LY K +GR +V Sbjct: 303 KEGMKLTISFSCSLTDRLNDELLDTTLKRADKMLYSVKNNGRGWIVT 349 >gi|28900057|ref|NP_799712.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|260362250|ref|ZP_05775229.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|260880632|ref|ZP_05892987.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|260896587|ref|ZP_05905083.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|28808340|dbj|BAC61545.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086820|gb|EFO36515.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|308091814|gb|EFO41509.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|308115619|gb|EFO53159.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|328470040|gb|EGF40951.1| GGDEF family protein [Vibrio parahaemolyticus 10329] Length = 337 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 89/155 (57%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LS L N AF + L + N+ ++++ DID+FK NDN+GH GD V+ ++ +L Sbjct: 181 DGLSNLYNRRAFDTDLSMLINANQAMTLILLDIDHFKAFNDNYGHLFGDTVLKAIARRLQ 240 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221 + R GGEEFA S + A A+ LR++IE ++ + SG +H IT S Sbjct: 241 QSCRDGVSAYRFGGEEFALIVPNKSLRIARQYADTLRRMIEKLRVRDKRSGTQVHSITAS 300 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE + + +++ +AD+ LY AK+ GRNRV+ Sbjct: 301 FGVAEFEVGDTVDSLVNKADKQLYEAKQLGRNRVM 335 >gi|310767351|gb|ADP12301.1| conserved uncharacterized protein YneF [Erwinia sp. Ejp617] Length = 464 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 91/167 (54%), Gaps = 11/167 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIV----FFDIDYFKQINDNFGHPV 150 RI++ + D L+G L S + L S N + + DID FK IND +GH Sbjct: 293 RITRRADYDFLTGALTRSGLSTKLDSLVTGRNRQQGFIGAALVIDIDRFKDINDTWGHAA 352 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+A ++ L V R+GGEEF G ++ +++LAN LR+ +EN++I I Sbjct: 353 GDYVLAKTAECLREGLSPSTLVCRMGGEEFLILIQGMTQPRSSLLANRLRQNVENNKI-I 411 Query: 211 SSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRV 255 +G + +T+S GI+ + + I RAD+ LY+AK SGRN+V Sbjct: 412 FNGHDLSVTVSIGISSLNISNVNSLDESIMRADEQLYIAKSSGRNQV 458 >gi|170751898|ref|YP_001758158.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831] gi|170658420|gb|ACB27475.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831] Length = 384 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NE 127 L +++ S+ + +++KE RI+ + D L+G+ N AF + + + Sbjct: 190 LCFVTLMFSIASAFTFMALVKERAEREQRIA--ASTDALTGVRNRRAFAQAAEAAIARHG 247 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 +++ FD+D FK +ND FGH VGD V+ + +GRLGGEEFA Sbjct: 248 DAALLLFDLDRFKAVNDRFGHGVGDAVLVGFCTMATTLLPREALLGRLGGEEFACLLPDV 307 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 S EA A +LR+ +Q+ I P++ +++S GIA+ ++ RAD ALYVA Sbjct: 308 SPAEALARAEELRQTF--AQLGIPELPALRVSVSIGIAQARAGIAFDALMRRADTALYVA 365 Query: 248 KKSGRNRVV 256 K GR+RV Sbjct: 366 KNGGRDRVA 374 >gi|184154425|ref|YP_001842766.1| hypothetical protein LAR_1770 [Lactobacillus reuteri JCM 1112] gi|183225769|dbj|BAG26286.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] Length = 387 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 9/162 (5%) Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFL 158 S D L+GLLN+ A I+ L + NE +IV DID+FK+IND +GH VG++V+ + Sbjct: 205 SERDDLTGLLNYRALSQEINRLANNNEIHNIVIGALDIDHFKKINDTYGHFVGNEVLNYF 264 Query: 159 S----DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 S +Q+ F +V R GGEEF S +E L + K N I G Sbjct: 265 STVFREQIHSAFPKHGYVYRFGGEEFTIVVSNHSLEEVYQLLQSIEKFFNNKSIVTKEGM 324 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+ S + +R + E + T + RAD+ LY K +GR +V Sbjct: 325 KLTISFSCSLTDRLNDELLDTTLKRADKMLYSVKNNGRGWIV 366 >gi|254826937|ref|ZP_05231624.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165] gi|258599317|gb|EEW12642.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165] Length = 357 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 17/197 (8%) Query: 76 ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128 + I+L++G +S ++ K+LF Y + S L + LS + I+ + + + + Sbjct: 164 VLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDAGSRQ 223 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184 ++++ DIDYFK IND +GH GD ++ QL V+ G R GGEEF+ Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAVILKESTTDGSEAFRNGGEEFSIVL 279 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQA 243 L S +E +A +RK E I G + ITIS G++ S +++ AD+A Sbjct: 280 LDCSIEEGNKVAEQVRKETEEHDFVIPGGQIVKITISVGVSSSKDGANTSEGLFKSADEA 339 Query: 244 LYVAKKSGRNRVVCFSD 260 LY AK +GRNR VC +D Sbjct: 340 LYKAKLTGRNR-VCIAD 355 >gi|134291731|ref|YP_001115500.1| diguanylate cyclase [Burkholderia vietnamiensis G4] gi|134134920|gb|ABO59245.1| diguanylate cyclase [Burkholderia vietnamiensis G4] Length = 387 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 15/237 (6%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLS---LVIISITISLLLGYISGSILKELF 94 F+A ++ +F + +G+ ++ S ++ + + I L +G ++ Sbjct: 151 FVAAAAYLGALFHVTRAVAAAFGMPHMAFPQPSPWNVLFLGLAIVTLPCMSTGMVMLAHD 210 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++ Q + ID L+G+L AF++ L EK LSI DID FK +ND FG Sbjct: 211 RLVRKMEQFASIDELTGVLMRRAFMARASVLLREAPEKGKPLSIAILDIDKFKAVNDGFG 270 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+++ ++ + + GRLGGEEFA + + +AA L N+LR +E Sbjct: 271 HAVGDRILRHVTSVVSARLRSCDLFGRLGGEEFAIVFVDAGMADAAALTNELRLAVER-- 328 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 S + T SAG+ + ++ + RAD ALY+AK +GRNRVV S+++ Sbjct: 329 ---SPNEGVRCTFSAGVECVTPGDTLAGALARADAALYMAKATGRNRVVTASEVDER 382 >gi|24111763|ref|NP_706273.1| diguanylate cyclase AdrA [Shigella flexneri 2a str. 301] gi|30061881|ref|NP_836052.1| diguanylate cyclase AdrA [Shigella flexneri 2a str. 2457T] gi|24050549|gb|AAN41980.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30040125|gb|AAP15858.1| hypothetical protein S0329 [Shigella flexneri 2a str. 2457T] gi|281599717|gb|ADA72701.1| MASE2 domain/diguanylate cyclase [Shigella flexneri 2002017] gi|313647000|gb|EFS11457.1| diguanylate cyclase domain protein [Shigella flexneri 2a str. 2457T] gi|333008111|gb|EGK27587.1| diguanylate cyclase domain protein [Shigella flexneri K-218] Length = 371 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + L+ G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPII-VVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|294011060|ref|YP_003544520.1| putative GAF sensor diguanylate cyclase [Sphingobium japonicum UT26S] gi|292674390|dbj|BAI95908.1| putative GAF sensor diguanylate cyclase [Sphingobium japonicum UT26S] Length = 331 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 12/176 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 L L + + +++ D L+G L AF+ + + +S++ FDID+FK+I Sbjct: 149 LAALVVEQLELRRIAERDHLTGALTRRAFLIEMNRAIALFERHQRPVSLLLFDIDHFKRI 208 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND GHP GD+VI ++ +L P +GRLGGEEF ++E++AA A + Sbjct: 209 NDTHGHPAGDQVIRGIA-RLCTSLQRPSDSLGRLGGEEFGILLPETAEEDAASAAQRFCE 267 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256 I ++ I P + +T+S G+AE P + + AD ALY AK+SGRNRV Sbjct: 268 AIAAAE--IPGPPPLCVTVSFGVAELRGDWPTGESWLAVADMALYEAKRSGRNRVA 321 >gi|259908752|ref|YP_002649108.1| hypothetical protein YneF [Erwinia pyrifoliae Ep1/96] gi|224964374|emb|CAX55883.1| conserved uncharacterized protein YneF [Erwinia pyrifoliae Ep1/96] gi|283478726|emb|CAY74642.1| Uncharacterized protein yneF [Erwinia pyrifoliae DSM 12163] Length = 464 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 91/167 (54%), Gaps = 11/167 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIV----FFDIDYFKQINDNFGHPV 150 RI++ + D L+G L S + L S N + + DID FK IND +GH Sbjct: 293 RITRRADYDFLTGALTRSGLSTKLDSLVTGRNRQQGFIGAALVIDIDRFKDINDTWGHAA 352 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+A ++ L V R+GGEEF G ++ +++LAN LR+ +EN++I I Sbjct: 353 GDYVLAKTAECLREGLSPSTLVCRMGGEEFLILIQGMTQPRSSLLANRLRQNVENNKI-I 411 Query: 211 SSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRV 255 +G + +T+S GI+ + + I RAD+ LY+AK SGRN+V Sbjct: 412 FNGHDLSVTVSIGISSLNISNVNSLDESIMRADEQLYIAKSSGRNQV 458 >gi|110833576|ref|YP_692435.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2] gi|110646687|emb|CAL16163.1| GGDEF domain protein [Alcanivorax borkumensis SK2] Length = 367 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 23/173 (13%) Query: 98 NRISQLSRIDCLSG---------LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 RI +++ D L+G LLN++ S+ G+Y +L++V+ D+D+FK+ ND +GH Sbjct: 199 ERIHEMAVKDELTGFYRRRHAMELLNNACGQSARGAY--QLAVVYLDLDHFKRTNDQYGH 256 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD V+ +D RLGGEEF L ++QE A R ++E + Sbjct: 257 RMGDAVLQRFADVARRHLTKQDLAARLGGEEFMLV-LPVTDQEEA------RNLVEGILM 309 Query: 209 NISS-----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ S P + +T+S G+A R E + +I RAD ALY AK++GR++++ Sbjct: 310 SMRSQRFKDAPGLMVTVSGGLAMRADGETPAQLIKRADLALYRAKETGRDKLI 362 >gi|56697678|ref|YP_168048.1| GGDEF domain-containing protein [Ruegeria pomeroyi DSS-3] gi|56679415|gb|AAV96081.1| GGDEF domain protein [Ruegeria pomeroyi DSS-3] Length = 249 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 2/187 (1%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI 131 +I+ + ++ L + L E+ +++ L+RID ++ L N + + L E+ + Sbjct: 44 IIVPLLVAPLATHWGAERLLEIDKLNQQLAHLNRIDQMTQLYNRACLLEKLEQEPEEAGM 103 Query: 132 VFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + DID+FKQIND +GH VGD VI ++ L R GGEEF + Sbjct: 104 ILIADIDHFKQINDTYGHDVGDLVIIEVARVLQRSSLPEGIAARFGGEEFVIYVPRLDLE 163 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 A A +R+ +E + I G + TIS GI R +E + ++ RAD+ALY AK Sbjct: 164 AAEFRAEAIRQAVEAQSVMID-GRKLSCTISIGIEIRQMQENVGDVLKRADEALYRAKAQ 222 Query: 251 GRNRVVC 257 GRN+VV Sbjct: 223 GRNQVVA 229 >gi|313682625|ref|YP_004060363.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM 16994] gi|313155485|gb|ADR34163.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM 16994] Length = 520 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 13/166 (7%) Query: 98 NRISQLSRIDCLSGLLNH---SAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPV 150 N +++ + D ++G N + ++ S + N ++++ FDID FK +ND FGH Sbjct: 356 NELAKAAATDPMTGAANRLQCNRWLKSATDHARQSNSSVALIMFDIDDFKHVNDTFGHNA 415 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209 GD V+ ++ + V + R GGEEF + + + LA LR IE +Q N Sbjct: 416 GDAVLINTAEIVHSVIRSHDMFARWGGEEFVILQINTPYEGTIALAERLRTKIEQTQFQN 475 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I HITIS G+A+ +E I T + +AD A+Y AKK G+NRV Sbjct: 476 IG-----HITISLGVAQFDKEESIETFVKKADDAMYQAKKEGKNRV 516 >gi|307133289|ref|YP_003885305.1| sensory box protein [Dickeya dadantii 3937] gi|306530818|gb|ADN00749.1| Sensory box protein [Dickeya dadantii 3937] Length = 773 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 11/164 (6%) Query: 103 LSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ++ D L+G+ N A+I ++ + ++ DID+FK++ND +GH VGD I L Sbjct: 609 MANTDVLTGIHNRRAYILETEKCYRNHEKNTALAIIDIDFFKKVNDQYGHHVGDVAICRL 668 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ + T FV RLGGEEF ++ + N +R +EN+ + G S H Sbjct: 669 AEIITSKLRTDDFVARLGGEEFGLIVHNANLDNVDAIMNGIRTEVENTLFTV-DGYSFHF 727 Query: 219 TISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G H K+ + + RAD ALY AK +GRNRVV Sbjct: 728 TVSIGATFIKHRNVQSLKDSFESDMKRADDALYEAKNAGRNRVV 771 >gi|114049240|ref|YP_739790.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113890682|gb|ABI44733.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 485 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 106/211 (50%), Gaps = 23/211 (10%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLL 113 L F+G NL L ++ +TI +LL IS L Y R + ++ D L+G Sbjct: 288 LNTFWG-------NLGLSLL-VTIGVLL--ISNMTLGR----YQRKLEIMASTDKLTGAA 333 Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N F EK +SI+ DID+FK++ND++GH +GD V+ +++ L Sbjct: 334 NRQVFEEYFHQALEKAKLSKQAISILLVDIDHFKKVNDSYGHSIGDLVLKTVTNLLRSQL 393 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 + R GGEEF AA LA R +I ++ ++ G I IT+S G+AE Sbjct: 394 KEQDVLCRWGGEEFIVLLPEMDLSHAAELAEHFRDLIFQRELKVN-GVHIAITVSIGVAE 452 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 EP +I RAD ALY AK++GRN+VV Sbjct: 453 YQKLEPAEDLIKRADLALYQAKEAGRNQVVL 483 >gi|254229234|ref|ZP_04922653.1| fog: ggdef domain containing protein [Vibrio sp. Ex25] gi|262395584|ref|YP_003287437.1| putative two-component response regulator and GGDEF family protein YeaJ [Vibrio sp. Ex25] gi|151938319|gb|EDN57158.1| fog: ggdef domain containing protein [Vibrio sp. Ex25] gi|262339178|gb|ACY52972.1| putative two-component response regulator and GGDEF family protein YeaJ [Vibrio sp. Ex25] Length = 453 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 7/156 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKV 154 N +S +++ D L+GLLN F + E SI+ D + K+IND +GH VGD+V Sbjct: 300 NALSDVTQ-DDLTGLLNRRVFKEERFKHRMEVEPYSIIAIDGNRIKKINDRYGHHVGDEV 358 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I ++D + VF ++ R GG+EF G S +A++LA LR +++++++N Sbjct: 359 IVIIADSMRKVFRNSDYLVRTGGDEFIVILPGCSMSKASMLAKKLRGVVKHNRLNT---L 415 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 I I++S G+A R E + +I RAD+ LY KK Sbjct: 416 DIEISVSTGVAVREEDETLQEVIVRADEELYEMKKQ 451 >gi|330830265|ref|YP_004393217.1| diguanylate cyclase/phosphodiesterase domain 1 [Aeromonas veronii B565] gi|328805401|gb|AEB50600.1| Diguanylate cyclase/phosphodiesterase domain 1 [Aeromonas veronii B565] Length = 377 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 9/151 (5%) Query: 107 DCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+GLLN F+ L G ++ ++V D+D FKQIND GH VGD+V+ + L Sbjct: 230 DPLTGLLNRRGFMERLARGRPAQQGALVVLDLDDFKQINDRHGHEVGDRVLEQVGLALRE 289 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 + G + R GGEEF ++ +EA LR + S++ IHIT+S GI Sbjct: 290 LEG--VLASRFGGEEFVLLFRHATAEEAIARCQSLRVQLAASEVE-----GIHITVSMGI 342 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 A + ++ RAD ALY AK+ G+NRV Sbjct: 343 AHWQGEWHFDSLFSRADDALYRAKREGKNRV 373 >gi|254447576|ref|ZP_05061042.1| response regulator PleD [gamma proteobacterium HTCC5015] gi|198262919|gb|EDY87198.1| response regulator PleD [gamma proteobacterium HTCC5015] Length = 261 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 17/197 (8%) Query: 75 SITISLLLGYISGSILKELFISYN--------RISQLSRIDCLSGLLNHSAFISSLGSYN 126 ++ +L++ + G+ L I N ++ +L+ D L+GL N F ++ Sbjct: 48 AVPAALIIPFFVGTPLVHNLIKSNIKLLRVQKQLEELANKDALTGLYNRQYFFDHANEWD 107 Query: 127 EK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ S++ D+D+FK IND FGHPVGD+V+ +S+ + R GGEE Sbjct: 108 KRCRENSGHFSLLMLDVDHFKSINDRFGHPVGDRVLQRVSNVIKGFMRQEDMCARYGGEE 167 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F ++ A +A +R +E+ + G S+ ++I G + + T+I R Sbjct: 168 FICLLPDTNAAGAKAVAERIRLGMEHQAFLKARGLSLSVSI--GATTMSANDNLETLIER 225 Query: 240 ADQALYVAKKSGRNRVV 256 ADQALY AK GRNR V Sbjct: 226 ADQALYEAKDGGRNRAV 242 >gi|312962636|ref|ZP_07777125.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens WH6] gi|311283011|gb|EFQ61603.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens WH6] Length = 365 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 22/170 (12%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S LSRID L+GLLNH ++ L + + +I DID+FK+IND GH VGD Sbjct: 193 LSALSRIDSLTGLLNHGSWKDLLHLKFHQCQQQHSQATIALIDIDHFKRINDTHGHIVGD 252 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---ENSQIN 209 V+ LS +L GR GG+EF ++EAA +R+I N QI Sbjct: 253 AVLRQLSLELRRNLRDDDLAGRYGGDEFCVILPQMRQEEAARRMERMREIFSNYRNPQI- 311 Query: 210 ISSGPSIHITISAGIAERCHKEPI----STIIYRADQALYVAKKSGRNRV 255 P + +++S G+A+ +P + + AD+ALY AK +GRNRV Sbjct: 312 ----PELRVSLSIGLAD---YQPFFSDAAMWLNAADRALYAAKDTGRNRV 354 >gi|304391595|ref|ZP_07373537.1| response regulator PleD [Ahrensia sp. R2A130] gi|303295824|gb|EFL90182.1| response regulator PleD [Ahrensia sp. R2A130] Length = 457 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 9/175 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 +L S + +++ D L+GL N F + + N+ LS++ DID+FK +ND Sbjct: 280 QLRASVHNTMEMAVTDGLTGLNNRRYFDNHMQGLLQKANLANKPLSLIIMDIDHFKHVND 339 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH VGD V+ +++++ R GGEEF A + + A ++A+ +R+ + Sbjct: 340 TYGHQVGDDVLKIFAERVLKNVRNKDLACRFGGEEFIVAMPDTDRELAFVVADRMRREVS 399 Query: 205 NSQINISSG-PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +G I IT+SAG+A E + T++ RAD+ LY AK+ GRN+VV Sbjct: 400 AHPFIVDNGRQQISITVSAGVAGIAGPNETVETMLKRADERLYDAKRRGRNQVVA 454 >gi|224369383|ref|YP_002603547.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223692100|gb|ACN15383.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 668 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 13/172 (7%) Query: 96 SYNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 +Y + S D L+GLLN AF ++ N+ LS+V D+D+FK+ NDNFG Sbjct: 497 AYKDAKKASLRDGLTGLLNRIAIDGLLEKAFRGAVEGKND-LSLVMIDVDFFKKFNDNFG 555 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-S 206 H GD ++ +++ L + VGR GGEEF + +A + A +R+ IE+ Sbjct: 556 HQSGDSILKLIANTLKKLSRPFDHVGRYGGEEFIVVLTNTGLSQAIVYAERIRREIEHLG 615 Query: 207 QINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ P + +T+SAG++ E+ K +I +AD+ALY AK++GRN+VV Sbjct: 616 VLLVNRFPGLALTVSAGVSGYEKNVKNR-EVLIAKADKALYQAKETGRNKVV 666 >gi|192290385|ref|YP_001990990.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] gi|192284134|gb|ACF00515.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 284 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 20/237 (8%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI---ISITISLLLGYISGSILKELFI 95 I T+IF+ + +G +E V SLV+ +S T+S + Y S ++++L Sbjct: 28 IVTIIFL----ISDLGTDLHATVEVGAVVKASLVVALGVSTTLSGAMAYRSARLMRQLTS 83 Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 + + ++SR D L+GLLN F ++ +++ + DID FK IND++GH Sbjct: 84 TRAELMRMSRTDPLTGLLNRRGFDDAAATVLAEAADAGQRVVALMCDIDRFKAINDHYGH 143 Query: 149 PVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 +GD+V+A + ++ F P M + R GGEEFA +G S+ +A A L ++ Sbjct: 144 NIGDRVLAEIG-GILRDFAAPRGMLIARHGGEEFAGLMVGVSDAQANDYAMTLCRMCATD 202 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 G + +T+S G+A E + ++ RAD ALY AK GRN VV E Sbjct: 203 V--PCDGRLVPVTMSFGVAAYAGGE-LPALMRRADLALYRAKDLGRNCVVQLEGSEG 256 >gi|153010975|ref|YP_001372189.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] gi|151562863|gb|ABS16360.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] Length = 473 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/126 (38%), Positives = 75/126 (59%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS++ DID+FK IND +GH GD V+ +++ ++ + FV R GGEEF A + + Sbjct: 338 LSVLMIDIDHFKNINDTYGHSSGDAVLQQVAEAILSLCRPSDFVFRYGGEEFLVALVEAD 397 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 E +A +A +LRK I +N+ G +T+S G+A S ++ AD+ALY AK Sbjct: 398 ENKAFTIAEELRKQIAQQPLNLPDGARQSVTLSIGVAAFNGHPDYSHLVNAADRALYRAK 457 Query: 249 KSGRNR 254 ++GRNR Sbjct: 458 QAGRNR 463 >gi|153212472|ref|ZP_01948241.1| GGDEF family protein [Vibrio cholerae 1587] gi|124116509|gb|EAY35329.1| GGDEF family protein [Vibrio cholerae 1587] Length = 469 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+G+ N +F L + + L+++ FDID FK IND FG Sbjct: 297 QQLEEANQKLSYLAKTDSLTGIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 417 WVVNAQYSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464 >gi|70729261|ref|YP_258998.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas fluorescens Pf-5] gi|68343560|gb|AAY91166.1| CHASE domain/sensory box-containing nucleotide cyclase, putative [Pseudomonas fluorescens Pf-5] Length = 799 Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 64/181 (35%), Positives = 95/181 (52%), Gaps = 13/181 (7%) Query: 83 GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFD 135 GYIS + +L + LS D L+G+ N F L + +L +++ D Sbjct: 621 GYISD--ISDLKRVEEELRALSVTDSLTGIHNRRYFQERLQAEMHRLERGGGVMAVIMLD 678 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK+IND +GH VGD+V+ L +++ RLGGEEF +S Q+A IL Sbjct: 679 IDHFKRINDQYGHGVGDQVLRGLCERIGRRLRRIDVFCRLGGEEFMVLCPDTSGQQALIL 738 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 A +L + +S I GP +T S GIA E ++ RAD A+Y AK++GR+RV Sbjct: 739 AQELWHGVRSSPI----GPVESVTASFGIASWRAGEGADELLLRADSAVYAAKQAGRDRV 794 Query: 256 V 256 + Sbjct: 795 L 795 >gi|332764257|gb|EGJ94493.1| diguanylate cyclase domain protein [Shigella flexneri K-671] gi|333022038|gb|EGK41283.1| diguanylate cyclase domain protein [Shigella flexneri K-304] Length = 371 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + L+ G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPII-VVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|320107961|ref|YP_004183551.1| diguanylate cyclase [Terriglobus saanensis SP1PR4] gi|319926482|gb|ADV83557.1| diguanylate cyclase [Terriglobus saanensis SP1PR4] Length = 636 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 88/173 (50%), Gaps = 9/173 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQIND 144 EL RI + D L+GL NH + L S EK LS++ D+D+FK++ND Sbjct: 456 ELMRESERIRHYAEHDGLTGLWNHRIIVQRLRQELERSRREKVPLSVILIDVDHFKKVND 515 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGHPVGD V+ LS + T + GR GGEEF G S + A A +LR ++ Sbjct: 516 TFGHPVGDLVLKELSAIFMSSLRTHDWGGRYGGEEFLLILPGCSIEGALSRAEELRLAVQ 575 Query: 205 NSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256 +++I + + +T S G+A +I D ALY AK SGRN VV Sbjct: 576 SARI-MDGETMLEVTASFGVASNFTSNHEYEAVIRVVDTALYRAKSSGRNCVV 627 >gi|229513275|ref|ZP_04402740.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae TMA 21] gi|229349685|gb|EEO14640.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae TMA 21] Length = 469 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+G+ N +F L + + L+++ FDID FK IND FG Sbjct: 297 QQLEEANQKLSYLAKTDSLTGIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 417 WVVNAQYSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464 >gi|332761771|gb|EGJ92050.1| diguanylate cyclase domain protein [Shigella flexneri 2747-71] gi|332768488|gb|EGJ98671.1| diguanylate cyclase domain protein [Shigella flexneri 2930-71] Length = 366 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + L+ G++S +L R+ +S D ++G+ N + + L + Sbjct: 171 LSLPII-VVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 229 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 230 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 289 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 290 VIMSGTP-AESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 340 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 341 REWLKSADLALYKAKKAGRNRT 362 >gi|304310934|ref|YP_003810532.1| hypothetical protein HDN1F_12960 [gamma proteobacterium HdN1] gi|301796667|emb|CBL44879.1| hypothetical protein HDN1F_12960 [gamma proteobacterium HdN1] Length = 363 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 99/196 (50%), Gaps = 20/196 (10%) Query: 88 SILKELFISYN---------RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131 S L+++ I++N R+ LS +D L+G+ N +++ +LS Sbjct: 155 SFLQQVLIAHNNAQLAEANTRLKVLSEVDSLTGIYNRRFLDNAMDEEWRRARRMGYRLSF 214 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQ 190 + DID+FK ND +GH VGD+ I ++ +L +F P V R GGEEFA G Sbjct: 215 LMCDIDFFKLYNDTYGHLVGDQCIRKVAQRLQSLFHRPGDVVARYGGEEFAVLLPGLEAS 274 Query: 191 EAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPIST--IIYRADQALYVA 247 EA LA + I+ I S+ +TIS G+A+ E T + AD+ LY+A Sbjct: 275 EAHALAKVVCAEIQALAIPHSTSTVADVVTISIGVADILPNEESETRDLCRMADEGLYLA 334 Query: 248 KKSGRNRVVCFSDIEN 263 K+SGRNR CF D E+ Sbjct: 335 KRSGRNRAECFGDAES 350 >gi|258404195|ref|YP_003196937.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense DSM 5692] gi|257796422|gb|ACV67359.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense DSM 5692] Length = 550 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LSR D L+GL N FI S +E+L++ DID+FK +ND +GH VGD Sbjct: 374 LKRLSRTDELTGLFNRRHFITLMHKEFSRARRTHERLTLAMLDIDHFKDVNDKYGHDVGD 433 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L L R GGEEFA + +A + LR + S+++ + Sbjct: 434 HVLQHLGRILREDVRPYDIAARYGGEEFAICFPDTDLSQADHICERLRTLCAASEVSRNG 493 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 G +I T+S G++E R E + ++ AD ALY AK +GRNR+ Sbjct: 494 G-TIGFTVSFGLSELRPEHEDLDGLLKSADNALYAAKANGRNRI 536 >gi|194432614|ref|ZP_03064900.1| MASE2 domain/diguanylate cyclase [Shigella dysenteriae 1012] gi|194419175|gb|EDX35258.1| MASE2 domain/diguanylate cyclase [Shigella dysenteriae 1012] gi|332085990|gb|EGI91154.1| diguanylate cyclase domain protein [Shigella dysenteriae 155-74] Length = 320 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 25/201 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 125 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 183 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 184 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 243 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 244 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 294 Query: 239 R-----ADQALYVAKKSGRNR 254 R AD ALY AKK+GRNR Sbjct: 295 REWLKSADLALYKAKKAGRNR 315 >gi|223040451|ref|ZP_03610725.1| ggdef domain protein [Campylobacter rectus RM3267] gi|222878301|gb|EEF13408.1| ggdef domain protein [Campylobacter rectus RM3267] Length = 519 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S+ D L+ A I L Y+ + FFDID+FK IND +GH GD V+A Sbjct: 354 SKEDFLTKTGTKKALIEELEQMEQKYNRYDSDYGVCFFDIDHFKLINDTYGHEAGDVVLA 413 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + L FVGR GGEEF ++ +A A+ +R+I++NS+ + G I Sbjct: 414 AIGKMLRKYSRQVDFVGRYGGEEFVILLPETTLADAIKFADKMREIVQNSKF-MYKGERI 472 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T S G+A R S I AD+ LY AK+ GRN+V+ Sbjct: 473 DVTASCGVAIRSENTGSSVTIEEADKMLYQAKQGGRNKVM 512 >gi|149188413|ref|ZP_01866706.1| GGDEF family protein [Vibrio shilonii AK1] gi|148837631|gb|EDL54575.1| GGDEF family protein [Vibrio shilonii AK1] Length = 340 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 11/169 (6%) Query: 101 SQLSRIDC------LSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVG 151 SQL+++ C L+ L N AF + L + + +S++F DID+FK+ ND FGH G Sbjct: 172 SQLAKVQCNALFDSLTSLYNRGAFDADLNMFCDAKQPMSLIFLDIDHFKKFNDEFGHLFG 231 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 D ++ +S +L + R GGEEFA S + A +A+ LR IE I + Sbjct: 232 DTILKGISQRLKQACRGGITAYRFGGEEFALIIPNKSLRVARQMADALRLAIEKMTIKDR 291 Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G + +IT S G+AE + +++ RAD+ LY AK++GRNRV+ F Sbjct: 292 KNGSKVGNITASFGVAEFTAGDTYISLVDRADKMLYDAKRAGRNRVMPF 340 >gi|83643401|ref|YP_431836.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631444|gb|ABC27411.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 373 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 16/208 (7%) Query: 62 EYILVENLSLVIISITISLLLGYISG--SILK----ELFISYNRISQLSRIDCLSGLLNH 115 E++L+ L +V+ + +L+ G+IS + L+ +L + +IS ++ D L+GL Sbjct: 158 EFVLLTALFMVMAQM--ALIGGFISKLRASLRVKNHQLNEALEKISVMASTDELTGLCTR 215 Query: 116 SAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 + L + + LS+ DID+FK+IND++GH GD V+ ++ + + + Sbjct: 216 RELMKQLSNEFSRCRRSSGALSLCLLDIDHFKRINDSYGHQAGDAVLKKVAQTMQSLVRS 275 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 +GR GGEEF + A I A LR+ + + P +TIS G AE Sbjct: 276 IDCLGRYGGEEFLLILPQTPLDGAFITAERLRRAVMDIPFP-EVAPEFRVTISLGAAELE 334 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256 E + T+I R D+ALY AK +GRNRVV Sbjct: 335 EGEAMETLISRVDKALYAAKGAGRNRVV 362 >gi|304320054|ref|YP_003853697.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis HTCC2503] gi|303298957|gb|ADM08556.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis HTCC2503] Length = 459 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 15/196 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSLGSYNEK-- 128 I + + + + ++ ++ + R S +L+ +D L+G+ N S L K Sbjct: 260 IDVQEMAARVRTQLRRKWYVEHLRDSLSQSLELAVLDGLTGIYNRRFLQSQLPRLLTKAV 319 Query: 129 -----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 LS++ D+D+FK +ND +GH VGD V+ + L R GGEEF Sbjct: 320 KRELPLSVMILDVDFFKAVNDTYGHDVGDAVLREIGHMLHFSLRGMDLACRYGGEEFVVV 379 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRA 240 + + + ++A LRK I QI+ +G S +T+S G+A +E ++++ RA Sbjct: 380 LPETPREGSEVIAERLRKEIAGLQIDAGNGQSFSVTVSIGMAFFDGTSREETPASLLKRA 439 Query: 241 DQALYVAKKSGRNRVV 256 D+ALY AK+ GRNRV+ Sbjct: 440 DEALYRAKEGGRNRVI 455 >gi|291618368|ref|YP_003521110.1| YdaM [Pantoea ananatis LMG 20103] gi|291153398|gb|ADD77982.1| YdaM [Pantoea ananatis LMG 20103] Length = 533 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 8/168 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+S ++ D L+ LLN + L Y + +++ DID+FK +NDN+GH VGD+VI Sbjct: 368 RLSSEAQTDSLTLLLNRRGLNAVLDYYQTMRQPFAVLALDIDHFKSVNDNWGHDVGDRVI 427 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L V R GGEEF + +EA A +R I ++ I Sbjct: 428 RQVAQTLRQSARQSDVVCRNGGEEFLMLLPNTPLKEAEATAERIRISIADNAIEAVG--- 484 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 HITIS G+AE + P+ + + RAD ALY AK SGRN V ++ Sbjct: 485 -HITISIGVAEWDARRPPLESSLKRADDALYQAKNSGRNCTVVAKRVK 531 >gi|115523504|ref|YP_780415.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] gi|115517451|gb|ABJ05435.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] Length = 232 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 82/166 (49%), Gaps = 10/166 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I L+ D L+G+ NH F L + E LS + D+D+FK INDNFGH G Sbjct: 69 QIVALTLTDSLTGVGNHRRFEQDLTTEIKRFERTGEPLSALMVDLDHFKTINDNFGHDAG 128 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+A D L+V R+GGEEF ++ EA A LR +I+ Sbjct: 129 DQVLATFGDLLLVQLRATEIATRIGGEEFVVLLPHTALDEAKATAERLRAATAELRIH-- 186 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G + +T S G+A E + R DQALY AK +GRN VV Sbjct: 187 -GLPLDVTASFGVATMAPGEDRIAFMRRLDQALYRAKHAGRNCVVA 231 >gi|13474053|ref|NP_105621.1| hypothetical protein mll4839 [Mesorhizobium loti MAFF303099] gi|14024805|dbj|BAB51407.1| mll4839 [Mesorhizobium loti MAFF303099] Length = 253 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 96/166 (57%), Gaps = 3/166 (1%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-GSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+S+ + D ++G+LN +F ++L GS +++ +++ D D+FK+IND+FGH GD + Sbjct: 84 RLSEKASRDDMTGMLNRESFFAALDGSRRKSDRGALLIIDADHFKKINDSFGHLTGDDAL 143 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ + + +GR+GGEEF A +G++EQEA +A +R+ +E + + Sbjct: 144 LLIASAIERGVRSGDVLGRIGGEEFGAFLVGATEQEAKRVAERIRREVELIRFRPVDERT 203 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I +T+S G +S ++ AD+ LY AK GRN + +DI Sbjct: 204 IPLTVSIGGTVCGEDVNVSELMRAADRRLYQAKHRGRNLTILDTDI 249 >gi|323963644|gb|EGB59173.1| GGDEF domain-containing protein [Escherichia coli M863] Length = 362 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 ++ I I +S + I+ S++K++ + + L+++ SGL + A S + L Sbjct: 158 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 213 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DIDYFK INDN+GH GDKV++ + + + G V R+GGEEFA A + Sbjct: 214 TVMLLDIDYFKSINDNYGHECGDKVLSVFAQHIQKIVGDKGLVARMGGEEFAVAVPSVNP 273 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQAL 244 + ++A +RK +E ++++T+S G+ C + + ++ AD L Sbjct: 274 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGCASYRTLTDDFNKLMVEADTCL 332 Query: 245 YVAKKSGRNR 254 Y +KK GRNR Sbjct: 333 YRSKKDGRNR 342 >gi|311279495|ref|YP_003941726.1| diguanylate cyclase [Enterobacter cloacae SCF1] gi|308748690|gb|ADO48442.1| diguanylate cyclase [Enterobacter cloacae SCF1] Length = 457 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 90/172 (52%), Gaps = 10/172 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 Y Q S D ++ L N S F SL + + S++ D+D+FK+IND++GH Sbjct: 284 YQNSYQNSIRDPMTQLYNRSYFYDSLTQTIARVTPQQPASVIVCDLDHFKRINDSYGHLQ 343 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDKVI F++ L R+GGEEFA + +S +EA +A +R II Sbjct: 344 GDKVIQFVASILQDSVRENDLAARIGGEEFALLLVNTSSEEAYRVAERIRLIISEHDAQS 403 Query: 211 SSG--PSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 SSG P ITIS G+ + + RAD+A+Y AK++GRNRVV + Sbjct: 404 SSGSFPE-KITISMGVFTTTSAGLGVEVCVQRADEAMYQAKENGRNRVVTWQ 454 >gi|302383279|ref|YP_003819102.1| diguanylate cyclase [Brevundimonas subvibrioides ATCC 15264] gi|302193907|gb|ADL01479.1| diguanylate cyclase [Brevundimonas subvibrioides ATCC 15264] Length = 351 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 30/194 (15%) Query: 91 KELFISYNRISQLSR---IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140 KE+ + Q+ R D L+ L N AF L + +S+ DID+FK Sbjct: 165 KEVARLREHLEQVRRDAMTDALTNLANRKAFDEELLRACDEAEKKRQPMSLAVLDIDHFK 224 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----------AAALGSSE 189 + ND +GH GD+V+ +++ + + P R GGEEFA AAL Sbjct: 225 RFNDTWGHQTGDQVLRYVASVIGRISKAPRVAARYGGEEFAIIFPSESAALVEAALNQIR 284 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +E I + LR+ N ++ +TIS G+A+R E S+++ RAD+ALY +K+ Sbjct: 285 EE--IGSRALRRRSTNDELGA-------VTISGGLAQRRPGETGSSLLDRADEALYASKR 335 Query: 250 SGRNRVVCFSDIEN 263 +GRN++ +E Sbjct: 336 AGRNKITNGERLEE 349 >gi|325567120|ref|ZP_08143787.1| signal transduction diguanylate cyclase [Enterococcus casseliflavus ATCC 12755] gi|325158553|gb|EGC70699.1| signal transduction diguanylate cyclase [Enterococcus casseliflavus ATCC 12755] Length = 404 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 8/141 (5%) Query: 126 NEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTP---MFVGRLGGE 178 NEK L +V D+D+FKQIND+ GH +G++ + F SD+L +P + V R GGE Sbjct: 265 NEKDQLVVVMMDLDHFKQINDHHGHQIGNQALTFFSDKLTTFLYQKSPSHLVEVYRYGGE 324 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EF ++ + + + N Q+ + G + + SAGI+E IS I Y Sbjct: 325 EFLVLFKENTSVSVKKIIEEFHLFLSNEQLKLE-GTQLTLYFSAGISEAGPTLDISEIFY 383 Query: 239 RADQALYVAKKSGRNRVVCFS 259 +ADQALY AK+ GRNR + FS Sbjct: 384 QADQALYEAKRKGRNRTIIFS 404 >gi|307719092|ref|YP_003874624.1| hypothetical protein STHERM_c14110 [Spirochaeta thermophila DSM 6192] gi|306532817|gb|ADN02351.1| hypothetical protein STHERM_c14110 [Spirochaeta thermophila DSM 6192] Length = 528 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ LS D L+ L N L Y S++ D+D+FK IND FGH Sbjct: 366 TRLEILSITDPLTSLFNRRKLQEELTREYQRALRYGSPFSLILIDLDHFKAINDTFGHGK 425 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++++ L + VGR GGEEF + EA ++A L N Sbjct: 426 GDEVLKWIAEALRTQLRSTDIVGRWGGEEFLVLCPETRLSEAGLIATKL----GNEIART 481 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S PS +TISAG+A + + ++ AD+ LY AK+SGRN ++ Sbjct: 482 SPLPSYRVTISAGVASFSTGKSLEDLLKEADKKLYRAKESGRNTIIT 528 >gi|222053406|ref|YP_002535768.1| diguanylate cyclase [Geobacter sp. FRC-32] gi|221562695|gb|ACM18667.1| diguanylate cyclase [Geobacter sp. FRC-32] Length = 400 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 39/261 (14%) Query: 28 MIYFSIFFSIFIATVIFIANIFLFYIGLTPF-YGLEYILVENLSLVIISITIS-LLLGYI 85 M Y++ F F+A + IFL Y L + + ++ N + I+ I+ + Y Sbjct: 125 MFYYTFFRLPFLAATVLSWTIFLLYEVLVIWTKSIPLPILTNNTFFFIAFNITGMSASYS 184 Query: 86 SGSILKELFISYNRI---------------------SQLSRIDCLSGLLNHSAFIS---- 120 +++ F+ +I +++++D L+ L N F S Sbjct: 185 IERYMRQDFLQRRKIREQTENLKKALLDVEKSRHEAEEMAKLDPLTSLYNRRHFFSIAER 244 Query: 121 ---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGR 174 Y LSI+ D+D+FK++ND +GH +GD+V+ L+ D+L+ TP R Sbjct: 245 ELARYRRYRHSLSIIMIDLDHFKRVNDTYGHFIGDQVLQALAAAIDKLMRKADTPC---R 301 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEP 232 GGEEFA + A L ++ IE+++I+ GP I +T+S GIA + Sbjct: 302 YGGEEFAILMPETDLAAAQNLGRRIKDAIESTEIDTRKGP-IKVTLSMGIASLDGAEDAC 360 Query: 233 ISTIIYRADQALYVAKKSGRN 253 I ++ RAD ALY AK SGR+ Sbjct: 361 IEQLVERADHALYQAKYSGRS 381 >gi|224371003|ref|YP_002605167.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2] gi|223693720|gb|ACN17003.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2] Length = 430 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 11/164 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + + D L+G+ N F +L S Y LS++ FDID+FKQ+ND++GH GD Sbjct: 268 LEKQASTDALTGIFNRMKFNQTLTSEIKRAKRYRVALSLILFDIDHFKQVNDSYGHLSGD 327 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+ + R GGEEF A +S + A LA LR IEN + Sbjct: 328 TVLKHLARLVASNLREIDIFARWGGEEFVIQAPETSLESAIKLAEKLRSKIENY---VFP 384 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P IT+S G+A + T++ RAD+ALY AK+ GRN+VV Sbjct: 385 APK-KITVSFGVATFRSSDNDITLVNRADEALYRAKEGGRNQVV 427 >gi|194292174|ref|YP_002008081.1| hypothetical protein RALTA_B1429 [Cupriavidus taiwanensis LMG 19424] gi|193226078|emb|CAQ72025.1| conserved hypothetical protein; cyclic di-GMP synthetase domain (GGDEF); modular protein [Cupriavidus taiwanensis LMG 19424] Length = 612 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 85/177 (48%), Gaps = 3/177 (1%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 L+E ++ Q +R D L+GLLN A +S+ +E S+V D+D FKQIND G Sbjct: 432 LRERAALTAQLEQQARTDSLTGLLNRRALELVSARYGAHESASLVLIDVDRFKQINDRHG 491 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 HP GD+V+ ++ Q+ + + R GGEEFA EAA LA LR I + Sbjct: 492 HPAGDQVLRNIATQMRALVPAEGVLARFGGEEFALWLPHGRPGEAAALAETLRAAIASRP 551 Query: 208 INISSGPSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + +S + +T S + AD A+Y AK GRN V D+E Sbjct: 552 VYLSGTTQLAVTASFGVAVGHGGAGNWQRLFGAADAAMYRAKAEGRNCVREAQDLEG 608 >gi|39937055|ref|NP_949331.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009] gi|39650912|emb|CAE29435.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris CGA009] Length = 382 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 9/180 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140 S + ++ + + +L+ D ++G+ N F+ S Y +S + DIDYFK Sbjct: 182 SDVTDIVRNAEELERLATTDGMTGVYNRRHFLTLADREWSRARRYERPMSFLMIDIDYFK 241 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND FGH VGD++I L+ + RLGGEEFA + +A ++A LR Sbjct: 242 AINDGFGHQVGDEMIVHLARLARDCKRDCDVLARLGGEEFALLLPETDLAQAEVVAERLR 301 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + + + ++S +I T+S G+A + +S ++ ADQALY AK +GRNRV+C + Sbjct: 302 REVAGNALVVASH-AIPATVSIGVATALPGMKDVSDLMKAADQALYDAKHAGRNRVICRA 360 >gi|332140102|ref|YP_004425840.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] gi|332143100|ref|YP_004428838.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550124|gb|AEA96842.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327553122|gb|AEA99840.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 325 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 11/160 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 SR+D L+GL N + ++ + V DID+FK+IND +GH GDKVI Sbjct: 159 SRVDGLTGLFNRRYWQERFDEMYKLCVRRDKPSTAVMLDIDHFKRINDTYGHQAGDKVIK 218 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ + GR GGEEFA S+ ++A I+A +R++ + + G SI Sbjct: 219 MLAALIKRCVRETDLAGRYGGEEFAIILNDSTVEDARIVAERIRQLAQRLVVE-HEGESI 277 Query: 217 HITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254 + T+S G+A+ C K P++ + AD+ALY AK+SGRN+ Sbjct: 278 NFTVSLGLAQFCSAFKGPLAWLEC-ADKALYDAKESGRNQ 316 >gi|78042726|ref|YP_359012.1| GGDEF domain-containing protein [Carboxydothermus hydrogenoformans Z-2901] gi|77994841|gb|ABB13740.1| GGDEF domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 543 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 92/176 (52%), Gaps = 17/176 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQINDNFGHP 149 Y R+ +L++ D L+GL N F+ L S KL +IV DIDYFK+IND +GH Sbjct: 372 YLRLKELAQKDELTGLYNRRYFLERLNEEHLRSRRHKLNYTIVLLDIDYFKKINDTYGHD 431 Query: 150 VGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GD V+ FL D L R GGEEF + ++EA +LA LR+ ++ Sbjct: 432 CGDLVLNDFGRFLKDTLR----RTDLSARYGGEEFVVLLPQTGKKEAYLLAERLREKVK- 486 Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ I G + T+S G+A E ++ AD+ALY AK GR++VV ++ Sbjct: 487 ERVLIFQGQKVKYTVSMGLAAYPEDAEEYRELLSLADKALYQAKNRGRDKVVMVNN 542 >gi|77360154|ref|YP_339729.1| sensory box/GGDEF protein [Pseudoalteromonas haloplanktis TAC125] gi|76875065|emb|CAI86286.1| conserved protein of unknown function ; putative sensory box/GGDEF family protein [Pseudoalteromonas haloplanktis TAC125] Length = 323 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 9/182 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLS-----IVFFDIDYFKQIN 143 KEL ++ Q+S+ D L+ L N + +L K S ++ FDID+FK++N Sbjct: 142 KELEQLNKKLEQVSQTDSLTQLANRGHWEHTLRQEFLRTKRSGGCSTLLMFDIDHFKKVN 201 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD+ + ++ L GR GGEEFA L + +Q A I+A LR++I Sbjct: 202 DEYGHSCGDEALRHIAKLLKGTLRETDIAGRYGGEEFAITLLDTDKQGAMIIAERLRELI 261 Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + + + +T+S GIA ++ + I AD+ALY +K +GRN + F DI+ Sbjct: 262 AATPVAYKD-QLVSMTVSIGIASYSNEFKNHERWIEAADKALYNSKHNGRNSITMFDDIK 320 Query: 263 NN 264 N+ Sbjct: 321 ND 322 >gi|88861223|ref|ZP_01135856.1| GGDEF family protein [Pseudoalteromonas tunicata D2] gi|88816816|gb|EAR26638.1| GGDEF family protein [Pseudoalteromonas tunicata D2] Length = 360 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/175 (38%), Positives = 93/175 (53%), Gaps = 22/175 (12%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+GLLN +F I+ L S N L + F DID FKQ ND+FGH GD Sbjct: 186 QTKQDATHDALTGLLNRGSFDDDITQLCSNTKSNSSLFLTFVDIDNFKQFNDDFGHQKGD 245 Query: 153 KVIAFLS-------DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +V+ ++ DQL + + R GGEEF + SS+Q LR IE Sbjct: 246 QVLKIVAKMLHNKCDQLNIAY-------RFGGEEFCIISQNSSQQICFDFVESLRVAIER 298 Query: 206 SQINIS-SGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + S +G ++ I+ S GIA + + +I +ADQALY+AK+SGRNRV F Sbjct: 299 LSVKDSKTGANLRKISASFGIARHQQHDSPAELIEKADQALYLAKQSGRNRVEIF 353 >gi|320333551|ref|YP_004170262.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] gi|319754840|gb|ADV66597.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] Length = 376 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 21/196 (10%) Query: 84 YISGSILK--ELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIV 132 Y+SG++L + +++ R + ++ +D L+GL N L + LS+V Sbjct: 179 YLSGAVLIGIQYALAFARKRDREVHLMAYMDFLTGLPNRRYAEGHLAQHTRPGHAPLSVV 238 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK+IND +GH VGD V+ L+ L G + R GGEEF + +A Sbjct: 239 MLDLDHFKRINDTYGHHVGDHVLRELAQVLSRHTGRARVLARWGGEEFLLILPDTVLADA 298 Query: 193 AILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 LA +R+ +E ++ ++ TISAG+A+ E ++ RAD ALY AK Sbjct: 299 HALAERMRQSVEAHVFDEVGVA-------TISAGVAQAEADEAAHAVLRRADAALYRAKG 351 Query: 250 SGRNRVVCFSDIENNT 265 GRNRV+ ++ T Sbjct: 352 QGRNRVMADTEPRGGT 367 >gi|313498170|gb|ADR59536.1| Diguanylate cyclase [Pseudomonas putida BIRD-1] Length = 474 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 13/169 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHP 149 R++ + +D L+G+L SAF + E L+++ DID+FK IND GH Sbjct: 297 RLAHQATVDHLTGVLTRSAFTRRANALLESRQQHAQALPLTLMMLDIDHFKSINDAHGHA 356 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ + L + RLGGEEF G + + A A LR+ I++ + Sbjct: 357 VGDQVLRQFASTLQDQLHNDELIARLGGEEFVVILPGLAPERANFTAERLRRAIQDLHV- 415 Query: 210 ISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255 + + + IT+S G+A P + ++ ADQALY AK GRNRV Sbjct: 416 VQADQRLQITVSIGVAGCDADMPAPSLDELLASADQALYRAKARGRNRV 464 >gi|311695657|gb|ADP98530.1| sensory box/GGDEF family protein [marine bacterium HP15] Length = 344 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 31/237 (13%) Query: 51 FYIGLTPFYGLEYILVENLSLVIISITISLL-------LGYISGSI-------------L 90 F G+ Y L +++ +L V + + S+ G+++GS+ L Sbjct: 106 FVFGMKFHYALTAMVLSSLGFVGLMLMDSVYGERTWMNAGFVAGSLFVGVIGRHRIDRLL 165 Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 +L + ++ LS ID L+ L N A +S G N++L+++ D+D+FKQ N Sbjct: 166 GQLQEANEQLVGLSTIDELTDLFNRRALMSESGRLFARQRRSNQRLAVLMMDLDHFKQFN 225 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D++GH GD+ I +D + VF +GR GGEEF A G +LA ++ K Sbjct: 226 DHYGHQQGDQAIRQQADIMRQVFKRQTDILGRYGGEEFMAVIEGEDADRFELLAAEVLKQ 285 Query: 203 IENSQINISSGP-SIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256 ++ ++ P S ++ S GI + E I +I AD+ALY AKK GR R V Sbjct: 286 WQDRAVSNEDSPDSKELSCSIGICQGLATEFDSIDEMIRMADEALYRAKKQGRARYV 342 >gi|227114954|ref|ZP_03828610.1| putative signaling membrane protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 532 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 89/169 (52%), Gaps = 15/169 (8%) Query: 97 YNRISQLS---RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150 + RI +LS D L+GLLN S+ S + +++ + DID+FK++ND +GH + Sbjct: 356 HKRIGKLSLQAHTDPLTGLLNRRGIYESIELILSKSNRVAAIVIDIDHFKRVNDTYGHNI 415 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI L+ + + R GGEEF A + +AA +A LRK +E + I Sbjct: 416 GDDVIRLLAKNIKQGSRESDLICRTGGEEFLALLPDTDMTQAADIAERLRKKVEKMPLPI 475 Query: 211 SSGPSIHITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVV 256 +ITIS G+ C E I +++ AD ALY AK GRNRVV Sbjct: 476 PE----NITISLGVT--CFTPGMEQIDSVLKIADDALYQAKHEGRNRVV 518 >gi|149185851|ref|ZP_01864166.1| diguanylate cyclase, putative [Erythrobacter sp. SD-21] gi|148830412|gb|EDL48848.1| diguanylate cyclase, putative [Erythrobacter sp. SD-21] Length = 393 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 110/211 (52%), Gaps = 13/211 (6%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR-IDCLSGL 112 G+ PFY LE + + II+ T ++ G++ ++ ++ R ++L+ +D L+ + Sbjct: 181 GMMPFY-LEAMGAALMVEFIITAT-GVVDGFMRFKSERDRALADMREAKLATALDPLTNI 238 Query: 113 LNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 N ++ G K + D D+FK+IND FGH VGDKV+ ++ L Sbjct: 239 ANRRGLEQHFNAKGRMRPK-GLALIDCDHFKRINDQFGHDVGDKVLIAIAQGLD---SGS 294 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 +FV RLGGEEF G QE A A R+I + NI P IT SAG++ Sbjct: 295 LFVARLGGEEFVLLLYGEDWQEDAEAAR--RRITQVVHANIPEIP-YPITASAGLSAIEE 351 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + + + RAD+ALY AK+SGRNR + S+ Sbjct: 352 SDTLGSAMKRADKALYAAKESGRNRSLALSE 382 >gi|302343713|ref|YP_003808242.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075] gi|301640326|gb|ADK85648.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075] Length = 361 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 13/207 (6%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115 YGL +++NLS ++ +++ + K L + +R+++LS D L+ L NH Sbjct: 152 YGLVAEMIDNLSRIMELKSLAEARSNDLDDLNKRLRDANHRLTELSITDGLTSLFNHRYT 211 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 I LSI+ D+D+FK++ND GH GD+ + S L Sbjct: 212 HQRLEEEIRRCQRSETPLSIIMADLDHFKRLNDRLGHLAGDEALRLFSGWLRECVRNTDL 271 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI---TISAGIAERC 228 +GRLGGEEF L +A ++A +R+ +Q N + P I T+S G+A+ Sbjct: 272 LGRLGGEEFVVVLLDCPLDQALLVAEKIRR---TTQANSQAPPFEAIGGFTVSLGVAQWR 328 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRV 255 + S ++ AD+ALY AK+ GRN+V Sbjct: 329 PGQEASQLLDAADKALYQAKERGRNKV 355 >gi|300855858|ref|YP_003780842.1| membrane associated GGDEF domain-containing protein [Clostridium ljungdahlii DSM 13528] gi|300435973|gb|ADK15740.1| membrane associated GGDEF domain containing protein [Clostridium ljungdahlii DSM 13528] Length = 373 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 102/191 (53%), Gaps = 7/191 (3%) Query: 73 IISITISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----N 126 I++IT ++ Y+ I + LF+ + S + L+ + N + + L Sbjct: 180 ILTITFGFIIYYLCEYINQSSLLFLKFKEDSCRDFLTGLNNVRNFNNLFNDLSKRAVERK 239 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 E+LS++ DID+FK+IND +GHP GD+V+ ++ L V + + R GGEEF+ + Sbjct: 240 ERLSLIMIDIDWFKKINDTYGHPSGDEVLKQIALILKTVCRSFDIISRNGGEEFSILLID 299 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALY 245 ++A + +RK IE + +S+G I+I++S G+ + II AD ALY Sbjct: 300 CPNRQAIEIGEQIRKAIEKHEFILSTGKKINISVSIGVTTYPDIVNNVKQIIESADIALY 359 Query: 246 VAKKSGRNRVV 256 AK +GRN+V+ Sbjct: 360 EAKHTGRNKVI 370 >gi|78778089|ref|YP_394404.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78498629|gb|ABB45169.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM 1251] Length = 555 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/130 (41%), Positives = 75/130 (57%), Gaps = 8/130 (6%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS+V FD+D FK INDN+GH VGDKV+ + + R+GGEEFA + Sbjct: 432 LSLVIFDMDNFKNINDNYGHDVGDKVLIEYTKLITTCLRDSDIFCRIGGEEFALILPHVN 491 Query: 189 EQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 + +A LA+ +R K+ E++QI + IT+S G+ E E + RAD+ALY A Sbjct: 492 KSDAYKLADKIRSKVQEHNQI-------VAITMSFGVTEYKKDEDLELTFKRADKALYEA 544 Query: 248 KKSGRNRVVC 257 K +GRNRVV Sbjct: 545 KNAGRNRVVA 554 >gi|317127021|ref|YP_004093303.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Bacillus cellulosilyticus DSM 2522] gi|315471969|gb|ADU28572.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Bacillus cellulosilyticus DSM 2522] Length = 762 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 94/180 (52%), Gaps = 10/180 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQIN 143 +L LF S I +L+ D L+GL N + F S ++++I+F DID FK+IN Sbjct: 319 MLYALFQSQTEIQKLALTDELTGLSNRNDFRSRFEVMVKAEAQQRIAILFIDIDLFKRIN 378 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH VGD VI S +L VGR GG+EF A E+E L+ L ++ Sbjct: 379 DALGHYVGDTVIKETSKKLKENIPPDAIVGRWGGDEFIVALPFEEEREVVTLSKQL--LL 436 Query: 204 ENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + ++ + G + IT S GI A KEP +I +AD A+Y AK+ G+N+ + D+ Sbjct: 437 DIARPIVMKGYTFEITSSIGISTAPNDAKEP-EDLIRQADIAMYEAKRHGKNQYRFYQDV 495 >gi|332760662|gb|EGJ90950.1| diguanylate cyclase domain protein [Shigella flexneri 4343-70] Length = 320 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 25/201 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + L+ G++S +L R+ +S D ++G+ N + + L + Sbjct: 125 LSLPII-VVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 183 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 184 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 243 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 244 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 294 Query: 239 R-----ADQALYVAKKSGRNR 254 R AD ALY AKK+GRNR Sbjct: 295 REWLKSADLALYKAKKAGRNR 315 >gi|331015155|gb|EGH95211.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 425 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 11/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N A I++ + S + DID+FK +ND++GHP Sbjct: 255 QKLLEIAHSDTLTGLDNRRAAEHTLERMINTARIAGKPFSFIICDIDHFKSVNDHYGHPA 314 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ L R GGEEF SS ++AA LA +RK +E+ +I Sbjct: 315 GDSVLKSVAAILKHRIRAFDVAARWGGEEFLILVPDSSLKQAAELAERVRKGVESLEIP- 373 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +GP +TIS G+AE E +++I RAD+ LY AK+ GRNRV Sbjct: 374 EAGP---VTISLGVAELSPGETAASLIQRADKVLYQAKRLGRNRV 415 >gi|323495199|ref|ZP_08100283.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546] gi|323310558|gb|EGA63738.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546] Length = 271 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 10/163 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGD 152 R+ + + D L+ LLN F + + ++ + DID FK INDN+GH +GD Sbjct: 107 RLREQAMTDPLTSLLNRRGFHNLFDNQQTNVTSHQGACFIICDIDNFKTINDNYGHDIGD 166 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + LS L P FV R GGEEF S +A+++AN L+ I ++ N Sbjct: 167 ETLIRLSKILKSNIDQPNFVVRWGGEEFIIVLFSHSIHQASVIANHLKNTISSTHFNQVG 226 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ S GI++ E I R+D+ALY+AKK+G+NRV Sbjct: 227 S----VSASFGISQLKPNEAKEYAISRSDKALYIAKKNGKNRV 265 >gi|149375602|ref|ZP_01893371.1| response regulator receiver domain protein (CheY-like) [Marinobacter algicola DG893] gi|149360004|gb|EDM48459.1| response regulator receiver domain protein (CheY-like) [Marinobacter algicola DG893] Length = 588 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 17/184 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 +EL + ++ +S D L+G+ N F L + + LS+V DIDYFK++N Sbjct: 399 EELEQANEQLKAVSITDGLTGVANRRQFDEKLAAEWQRALRHGHPLSLVLLDIDYFKRVN 458 Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 DNFGH GD +A++ + G + R GGEEF+ + E AA +A LR Sbjct: 459 DNFGHLAGDDCLVSVAWVCASEIQRSGD--LLARYGGEEFSVLLPATPEAGAASVAERLR 516 Query: 201 KIIENSQINISSGPS-IHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + + + S +++++SAG+A P S +I RAD+ALY AK +GRN+V+ Sbjct: 517 VAVAGTSVYVGDHVSPLNLSVSAGVATILPEAGSRP-SELISRADEALYAAKGAGRNQVM 575 Query: 257 CFSD 260 F + Sbjct: 576 VFRE 579 >gi|150015543|ref|YP_001307797.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] gi|149902008|gb|ABR32841.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] Length = 1784 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S +D L+G+ N F + S + + +++ FDID FK +ND +GH GD+V+ Sbjct: 1447 STLDKLTGVYNRKYFEEALLFLLDSAKARESEFAVMMFDIDDFKGVNDKYGHQTGDEVLV 1506 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPS 215 ++D++ +GR GGEEF L + EAAI L +RK IE ++I G Sbjct: 1507 KVADEVKKCMSKGDIIGRYGGEEF-IILLPNVNCEAAINLGERIRKNIEEARI---LGDK 1562 Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T+S GIA ++ II RADQALY AK+ G+NR + + + Sbjct: 1563 RKVTVSIGIAMSSYESLNNEEIIRRADQALYKAKRDGKNRCIVWEN 1608 >gi|332308157|ref|YP_004436008.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175486|gb|AEE24740.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 318 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 13/169 (7%) Query: 98 NRISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + + +LSR+D L+G+ N F +L + E S++ DID+FK+INDN+GHP Sbjct: 149 DELQRLSRVDGLTGIYNRRYWEEQFDREFKRNLRTPGES-SVIMLDIDHFKKINDNYGHP 207 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+VI L+ + V GR GGEEFA ++ +LA +R +E +I Sbjct: 208 AGDEVIRQLAQLIEDVSRETDICGRYGGEEFAILLPDTASANVMVLAQRIRASVEKLKIE 267 Query: 210 ISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I T+S GIA+ + I + AD+ALY AKK+GRN+V+ Sbjct: 268 YEQH-TISFTVSLGIAQFNTAFGQHIQ-WLEEADKALYQAKKNGRNQVI 314 >gi|194307175|gb|ACF42099.1| response regulator [Enterobacter sp. FMB-1] Length = 294 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 86/162 (53%), Gaps = 8/162 (4%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +Y L+ D L+GL N L N++ +I DIDYFK IND +GH +GDKV Sbjct: 138 NYQSAVSLAFTDELTGLPNRRHLNFKLKEIENKRCTICIADIDYFKNINDTWGHEMGDKV 197 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +A + +L+ + +F+ R GGEEF EA A +R I + + G Sbjct: 198 LASVGLKLMNLSSNNLFIARSGGEEFCIII-----TEATDAAAQIRNICAFLEGGCNGG- 251 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++IT+S G A + E S ++ RAD ALY AK SGRNR+V Sbjct: 252 -VNITLSVGAATKEANEMSSWVMERADAALYQAKNSGRNRIV 292 >gi|296159771|ref|ZP_06842593.1| diguanylate cyclase [Burkholderia sp. Ch1-1] gi|295889985|gb|EFG69781.1| diguanylate cyclase [Burkholderia sp. Ch1-1] Length = 591 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 9/160 (5%) Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ LLN AF S + +L+++ FDID+FK+IND +GH GD + ++ Sbjct: 422 DFLTHLLNRRAFESRARLSCAERNAAEPELALIMFDIDHFKKINDTYGHATGDHALQLVA 481 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + V R GGEEFA + +A +A LR+ I ++I S G IT Sbjct: 482 RLCREICRQSDVVARWGGEEFAVLSRVQDAAQALAVAERLRRRISETRIPFSGGEGFTIT 541 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S G+ A C + + RAD+ LY AK++GR+R+V Sbjct: 542 ASFGVAFASACDSRDVDRLFRRADRLLYQAKEAGRDRIVA 581 >gi|123443225|ref|YP_001007199.1| diguanylate cyclase/phosphodiesterase domain-containing protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090186|emb|CAL13049.1| putative diguanylate cyclase/phosphodiesterase domain 1 protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 350 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 15/195 (7%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSL 122 L +I+I SLL G ++ K L + + ++S D L+GL N H+ F S Sbjct: 157 LPMITIYPSLL-GLVTYRTAKRLAENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSC 214 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 Y S++ DID FK IND FGH VGD+ I L+++L++ VGR GG+EF A Sbjct: 215 RRYQHGASLILLDIDNFKSINDTFGHAVGDEAITVLAEELLLGLRAIDIVGRYGGDEFGA 274 Query: 183 AALGSS-EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRA 240 ++ EQ +L ++ + + + P + + +SAGIA+ H + A Sbjct: 275 ILPNTTAEQTREVLMRIQERL---ADLVFTQAPPLQLRVSAGIADYRHDMINYQQWLKAA 331 Query: 241 DQALYVAKKSGRNRV 255 D ALY+AK +GRNR+ Sbjct: 332 DSALYLAKDNGRNRI 346 >gi|254427712|ref|ZP_05041419.1| GGDEF domain protein [Alcanivorax sp. DG881] gi|196193881|gb|EDX88840.1| GGDEF domain protein [Alcanivorax sp. DG881] Length = 358 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 23/173 (13%) Query: 98 NRISQLSRIDCLSG---------LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 RI ++ D L+G LL+ + S+ G+Y +L +V+ D+D+FK+ ND +GH Sbjct: 190 ERIHDMAVKDELTGFYRRRHAMELLSKACGQSARGAY--QLGVVYLDLDHFKKTNDQYGH 247 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD V+ +D F RLGGEEF S +EA R ++E + Sbjct: 248 RMGDLVLQRFADVTQRHLTNQDFAARLGGEEFMLVLPVSDPEEA-------RNLVEGILM 300 Query: 209 NISS-----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + S P + +T+S G+A H E + +I RADQALY AK++GR+R++ Sbjct: 301 GMRSQRFKDAPGLVVTVSGGLAMLNHGETPAQLIRRADQALYRAKETGRDRLI 353 >gi|126735069|ref|ZP_01750815.1| diguanylate cyclase response regulator [Roseobacter sp. CCS2] gi|126715624|gb|EBA12489.1| diguanylate cyclase response regulator [Roseobacter sp. CCS2] Length = 442 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 12/162 (7%) Query: 107 DCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N ++ L + K L+++ DID+FK +ND GH GD+V+ L+ Sbjct: 275 DPLTGLFNRRYVEPHLARLADQSRKSGRELAVMMIDIDHFKAVNDTHGHAAGDQVLIELA 334 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218 D+L V R+GGEEF A G+S +A + A+ LR ++ + S P I + Sbjct: 335 DRLRENLRAIDLVARMGGEEFLVAMPGTSVTDARLAADRLRALVNTMPFELGSDLPDIKV 394 Query: 219 TISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVV 256 T+S G+A +P I+ I +AD+ALY AK GR++V Sbjct: 395 TVSIGLAVSGQIKPETAAINKICAQADKALYAAKSGGRDQVA 436 >gi|78776221|ref|YP_392536.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78496761|gb|ABB43301.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM 1251] Length = 387 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 7/160 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +L+ D L+ L A I + K S DID+FK+ ND +GH GD+V+ ++ + Sbjct: 228 RLAFYDELTALPGRRALIEDMAKLGMKYSFAMIDIDHFKKFNDTYGHDTGDEVLKMVASK 287 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIHI 218 L V G R GGEEF E+ + LR+II S N S +I+I Sbjct: 288 LAEVGGGGK-AYRYGGEEFVVLFPSRELDESYKSTDILREIISKSPFVVRNKQSSKTIYI 346 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 IS+G+ ++ K+P + ++ RAD ALY AKK+GRN+VV Sbjct: 347 NISSGVVQKTSQDKDPFA-VMKRADNALYKAKKAGRNQVV 385 >gi|327394760|dbj|BAK12182.1| diguanylate cyclase YdaM [Pantoea ananatis AJ13355] Length = 526 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 8/168 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+S ++ D L+ LLN + L Y + +++ DID+FK +NDN+GH VGD+VI Sbjct: 361 RLSSEAQTDSLTLLLNRRGLNAVLDYYQTMRQPFAVLALDIDHFKSVNDNWGHDVGDRVI 420 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L V R GGEEF + +EA A +R I ++ I Sbjct: 421 RQVAQTLRQSARQSDVVCRNGGEEFLMLLPNTPLKEAEATAERIRISIADNAIEAVG--- 477 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 HITIS G+AE + P+ + + RAD ALY AK SGRN V ++ Sbjct: 478 -HITISIGVAEWDARRPPLESSLKRADDALYQAKNSGRNCTVVAKRVK 524 >gi|254515403|ref|ZP_05127464.1| GGDEF domain protein [gamma proteobacterium NOR5-3] gi|219677646|gb|EED34011.1| GGDEF domain protein [gamma proteobacterium NOR5-3] Length = 540 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 12/178 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 +EL + L+ +D L+ N A +L Y LSI+ DID FKQ+N Sbjct: 358 RELEAKNEELDHLASVDKLTDTFNRRALDKALLAELERADRYQRPLSILLMDIDLFKQVN 417 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GDKV+ LS + +GR GGEEF + ++A +A +R+ I Sbjct: 418 DEYGHLTGDKVLVTLSQTIRENLRASDILGRWGGEEFLVICPETDLEQARNVAEKVRQAI 477 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 E + + ITIS G++ +++ AD+ALY AK GRNR VC + I Sbjct: 478 EGTDFELGKT----ITISIGLSVLIEGTSAESLVAEADKALYQAKSQGRNR-VCTTPI 530 >gi|51894243|ref|YP_076934.1| hypothetical protein STH3108 [Symbiobacterium thermophilum IAM 14863] gi|51857932|dbj|BAD42090.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 425 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 16/192 (8%) Query: 77 TISLLLGYISGSILKELF--ISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128 T +L G G++L +F IS + + L+ D L+G N +F+ G ++ Sbjct: 207 TAALPPGAGDGAVLVCVFRDISARKRLESDLKHLATTDGLTGAYNRRSFVEVCGQELQRA 266 Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 S++ DID+FK++ND FGH GD+V+ + + V + VGR+GG+EFA Sbjct: 267 DRRARPTSLLLMDIDHFKRLNDRFGHAAGDEVLRQIVETGRRVLRSEDVVGRIGGDEFAV 326 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRAD 241 ++ ++A +A LR E + G + T+S G+AE + H + ++ RAD Sbjct: 327 LLPATTLEQAGRVAEQLRTTYERLAVPARGG-TATFTVSFGVAEWKPHLRTVEELLQRAD 385 Query: 242 QALYVAKKSGRN 253 +ALY AK +GRN Sbjct: 386 RALYAAKNAGRN 397 >gi|311694996|gb|ADP97869.1| response regulator receiver domain protein (CheY-) [marine bacterium HP15] Length = 613 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 8/176 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140 + ++EL + ++S LS D L+GL N + ++ L++ D D+FK Sbjct: 429 NTMRELEKANRKLSTLSLNDALTGLYNRRHLNNIFPELCAEARRTSQPLTLALVDADHFK 488 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199 IND +GH GD + F+++ L P V R GGEEFA G+ A + + L Sbjct: 489 NINDTWGHGFGDSCLQFIAEMLTRHVKRPRDVAIRFGGEEFALLLPGTDANGALNVCSAL 548 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I + + G + IT+SAGIA E + + RAD+ALY AK GRNR Sbjct: 549 LQDIARTPLLSPDGNKVKITLSAGIASLVSGETQNQLFERADEALYRAKSRGRNRA 604 >gi|327543277|gb|EGF29710.1| protein containing Diguanylate cyclase, predicted domains [Rhodopirellula baltica WH47] Length = 797 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 9/157 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N + F S L + N S++ DID+FKQ+ND GHP GD+ + + Sbjct: 487 DPLTGIANRAEFDSRLVRATADSKNNNSTFSLIICDIDHFKQVNDVHGHPAGDEALVQFA 546 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF A+ S AA A +RK IE + ++ +G S +T Sbjct: 547 RVLESHARDEDLVARYGGEEFVFLAINSDNATAARRAEQIRKAIEVTPLDGLNGES--VT 604 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+ E + TI+ R+D+AL AK++GRNRVV Sbjct: 605 VSFGVTEYQTGDAAETILARSDRALLQAKENGRNRVV 641 >gi|302388191|ref|YP_003824013.1| diguanylate cyclase with PAS/PAC sensor [Clostridium saccharolyticum WM1] gi|302198819|gb|ADL06390.1| diguanylate cyclase with PAS/PAC sensor [Clostridium saccharolyticum WM1] Length = 511 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 21/207 (10%) Query: 66 VENLSLVIISITISLLLGYISGS--ILKELF------ISYNRISQLSRIDCLSGLLNHSA 117 +E+ +IS+ IS + G +GS ++ LF + N + ++ D L+GL N Sbjct: 306 IEDKDGNMISVIISAVTGIYNGSEAVMINLFDVTAQKQAENALKNIAIKDELTGLYNRH- 364 Query: 118 FISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F+ S+ Y+ LS D+D+FK++ND +GHPVGD V+ ++ L Sbjct: 365 FLESIIDEEFDRAKRYDIPLSAALLDLDHFKKVNDKWGHPVGDSVLKLTANLLQNNIRKS 424 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 + R+GGEE + Q A + A +RK IE + I+ G T S G+AER Sbjct: 425 DYAIRIGGEELLILMPNTDSQGAYVTAEKVRKAIEEA-IHPVVG---RYTASFGVAERTM 480 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256 +E + + R D+ALY AK +GRNRVV Sbjct: 481 EEKYTDLYSRIDKALYQAKNNGRNRVV 507 >gi|51246803|ref|YP_066687.1| hypothetical protein DP2951 [Desulfotalea psychrophila LSv54] gi|50877840|emb|CAG37680.1| hypothetical protein DP2951 [Desulfotalea psychrophila LSv54] Length = 571 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 10/165 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +++ D L+ L N F S +L +N + LS++ DID+FK +ND GH G Sbjct: 405 KLVRIAATDSLTKLNNRRHFFSLGHEELALHLHNAQPLSVLMLDIDHFKNVNDTLGHQAG 464 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QINI 210 DKV+ S V + +GR+GGEEFA + +A A +R IE S + Sbjct: 465 DKVLKIFSKICAVNLRSVDIIGRIGGEEFAVILTNTPRSQAQRTAERIRLAIETSPEFTK 524 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S P IT+S GIA E + II RAD+ LY AK +GRNR+ Sbjct: 525 QSLPK--ITVSIGIATNQPPENLDAIICRADKNLYQAKSNGRNRI 567 >gi|308172899|ref|YP_003919604.1| diguanylate cyclase or phosphodiesterase [Bacillus amyloliquefaciens DSM 7] gi|307605763|emb|CBI42134.1| putative diguanylate cyclase or phosphodiesterase [Bacillus amyloliquefaciens DSM 7] gi|328552539|gb|AEB23031.1| diguanylate cyclase or phosphodiesterase [Bacillus amyloliquefaciens TA208] gi|328910939|gb|AEB62535.1| putative diguanylate cyclase or phosphodiesterase [Bacillus amyloliquefaciens LL3] Length = 360 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAF--ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+G+ N F +S + S + +L++++FDID+FKQIND +GH GD+V+ L Sbjct: 196 DFLTGIFNKRKFEEVSRVLYDRASQSASSQLALIYFDIDHFKQINDQYGHYEGDQVLKEL 255 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +L + R+GGEEFA + ++ LA ++R+ I+ + I ++SG +I + Sbjct: 256 GARLRFLISGSDPSARIGGEEFAVLIPNCTYKKGLHLAEEIRQAIDGNPILLTSGDTIPV 315 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S GIA + T+ AD+ LY AK SGRN+V Sbjct: 316 TVSLGIAHYPTNTADPQTLPLIADRLLYKAKTSGRNQV 353 >gi|290509246|ref|ZP_06548617.1| diguanylate cyclase (GGDEF) domain-containing protein [Klebsiella sp. 1_1_55] gi|289778640|gb|EFD86637.1| diguanylate cyclase (GGDEF) domain-containing protein [Klebsiella sp. 1_1_55] Length = 453 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+ L N S F +L K LS++ D+D+FK+INDN+GH GDKVI F + Sbjct: 294 DPLTRLYNRSFFYDTLNQQLAKVNPQHPLSVIISDLDHFKRINDNYGHVAGDKVIQFAAS 353 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L R+GGEEFA + ++E++A +A +R + Q ++ +TI Sbjct: 354 VLENHSRVDDAAARIGGEEFALLLVNTAEKDALAIAERIRLAVNAEQNHLPE----RMTI 409 Query: 221 SAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S G+ R T + RAD A+Y AK SGRNRVV + Sbjct: 410 SMGLYTTRDRSVNAETCVERADAAMYEAKNSGRNRVVVW 448 >gi|322419673|ref|YP_004198896.1| GAF sensor-containing diguanylate cyclase [Geobacter sp. M18] gi|320126060|gb|ADW13620.1| diguanylate cyclase with GAF sensor [Geobacter sp. M18] Length = 739 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 86/174 (49%), Gaps = 9/174 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 E+ R QLS D L+GL N S L + L+++F D+D+FK ND Sbjct: 530 EVLEESERFEQLSVTDALTGLYNRRFLKSRLEEELNRSIRQGLNLTVIFIDLDFFKNFND 589 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+ + +D + V R GGEEF A G+S+ EA I+A +R IE Sbjct: 590 LCGHLAGDEALKITADIIKASLREMDIVARYGGEEFCAVLPGTSKAEAMIVAERIRSEIE 649 Query: 205 NSQINISSG-PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 + P + +T S GIA +T+++ +D ALY AK SGRNR+V Sbjct: 650 KEKFPGEKDIPQMRLTASLGIASFPEDGRTFTTLVHSSDVALYEAKASGRNRIV 703 >gi|323492449|ref|ZP_08097597.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] gi|323313236|gb|EGA66352.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] Length = 433 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 15/175 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 LKE + + ++L+ D L+G +N + L S ++LS+++ DID+FK + Sbjct: 265 LKEQNVHF---AELANRDALTGAMNRHSIRDWLESNYQGQNTQAKRLSVMYLDIDHFKVV 321 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH +GD ++ + ++ + R GGEEF G + +EAA LA +R Sbjct: 322 NDKYGHAMGDDILREFTMVVLSSLSASERLVRWGGEEFVVFCPGRNSEEAAELAEKVRHR 381 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +E S + + P +T S G+A +E + ++ RAD+ALY+AK+ GRNRVV Sbjct: 382 VE-SHLWVHGDP---LTTSIGVAS-LGEERTNEMLVRADEALYMAKREGRNRVVV 431 >gi|323187181|gb|EFZ72495.1| hypothetical protein ECRN5871_4564 [Escherichia coli RN587/1] Length = 315 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 ++ I I +S + I+ S++K++ + + L+++ SGL + A S + L Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DIDYFK INDN+GH GDKV++ + + + G V R+GGEEFA A + Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFAQHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQAL 244 + ++A +RK +E ++++T+S G+ C + + ++ AD L Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGCASYRTLTDDFNKLMVEADTCL 294 Query: 245 YVAKKSGRNR 254 Y +KK GRNR Sbjct: 295 YRSKKDGRNR 304 >gi|257091769|ref|YP_003165410.1| response regulator receiver modulated diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044293|gb|ACV33481.1| response regulator receiver modulated diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 632 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 9/176 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 EL S R+ + D L+ L N A + SL + + ++ + D+D+FK +ND Sbjct: 451 ELATSNRRLEHAAMTDLLTDLPNRRAGMESLARFWSASMRTGQPVAALMIDVDFFKSVND 510 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH VGD+V+ ++ + V R+GGEEF + + A + A LR++++ Sbjct: 511 RHGHAVGDRVLQEVARAIQSAARKDDSVSRIGGEEFLLVCHDADPRAALLAAERLRRMVK 570 Query: 205 NSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +I++ G I +++S G+A R E ++ AD+ALY AK +GR+RV F+ Sbjct: 571 ALKISV-GGVDIQVSVSVGVASREAGMESEDDMLRAADKALYAAKNAGRDRVCLFA 625 >gi|261415029|ref|YP_003248712.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371485|gb|ACX74230.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327921|gb|ADL27122.1| HAMP/GGDEF domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 566 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 24/184 (13%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + ++ +SR D L+ L N + + + SI+F DID+FK +ND Sbjct: 380 ELEQANKKLDLISRTDELTQLPNRRDMHRTIEKEVDRANRFKKAFSIIFIDIDHFKDVND 439 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD V+ ++ + + + R GGEEF + ++AA +A RK IE Sbjct: 440 TYGHAAGDAVLKSVASTIRSLLRKYDVLARYGGEEFLTLLPETELKDAAHVAERFRKQIE 499 Query: 205 NSQINISSGPSIHITISAGI--------AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 N I G I +TI+ G+ AERC I AD+ALY K+ GRNRV+ Sbjct: 500 NQTI-FFGGQEIKVTITLGVAQFDSGLGAERC--------IQLADKALYEGKEHGRNRVI 550 Query: 257 CFSD 260 ++D Sbjct: 551 LWTD 554 >gi|323965332|gb|EGB60790.1| diguanylate cyclase domain-containing protein [Escherichia coli M863] gi|327254699|gb|EGE66315.1| diguanylate cyclase domain protein [Escherichia coli STEC_7v] Length = 371 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I +L G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPMLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVMLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|300715158|ref|YP_003739961.1| HmsT protein (Hemin storage system protein) [Erwinia billingiae Eb661] gi|299060994|emb|CAX58101.1| HmsT protein (Hemin storage system protein) [Erwinia billingiae Eb661] Length = 366 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 7/179 (3%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQIND 144 ++++L+ S LS +D L+GL N + L + E + ++ DID FK ND Sbjct: 177 LMRQLYEEKETYSDLSMLDPLTGLYNRRGLKNRLENILENHAGSHFVLLLDIDNFKAYND 236 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH +GD+ +A +S + + V R GGEEF +E A L+ +R+ + Sbjct: 237 NYGHAMGDQALARVSVAIRDAVRSRDIVTRYGGEEFLVLLTNVNESIARKLSERIRQYVL 296 Query: 205 NSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 N +I + + H+TISAG A +E T + AD+ALY+AK GRN ++ F DI Sbjct: 297 NLEIPHLFNDRVATHVTISAGFAPLI-EEDFDTALANADRALYLAKGRGRNTILSFEDI 354 >gi|167629225|ref|YP_001679724.1| hypothetical protein HM1_0848 [Heliobacterium modesticaldum Ice1] gi|167591965|gb|ABZ83713.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1] Length = 999 Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 77/253 (30%), Positives = 112/253 (44%), Gaps = 31/253 (12%) Query: 14 CHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI 73 CHE N + S YF S+ V + Y G T F+ + V L + Sbjct: 766 CHEVNADQGS------YFCTNLSVGGQVV----GVLHLYSGATGFFNDQTARVVRSLLAL 815 Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126 + TIS + I +NR +LS ID L+GL N +L + Sbjct: 816 AAPTISNMR-----------LIDHNR--RLSLIDPLTGLHNRRYLEQTLENLLVRSRETE 862 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 ++ DID FK ND FGH GDK + ++ + R GGEE +G Sbjct: 863 RPFCLIMADIDQFKGFNDTFGHDAGDKALRMVAANVRNCLREEDIAVRFGGEEITVILMG 922 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 S++ A +A+ +RK IE + I I G +IT+S G++ + + +I RAD ALY Sbjct: 923 VSKELAVTIADRIRKRIEQTPIEIGDGQLQYITLSMGVSAFPEDGKTLEKLIQRADLALY 982 Query: 246 VAKKSGRNRVVCF 258 AK+ G+NRV F Sbjct: 983 EAKRLGKNRVAAF 995 >gi|326795027|ref|YP_004312847.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326545791|gb|ADZ91011.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 367 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 10/166 (6%) Query: 100 ISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + L+ D L+GL N + F S+ +Y E ++ D+D+FK+IND +GH G Sbjct: 195 LQDLAEKDELTGLSNRRKVLADAVNVFADSIINY-EPCAMAIADLDHFKRINDTYGHDAG 253 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ +++ + + VGR GGEEF ++ +A LR++IE+ +I+ Sbjct: 254 DTVLKAVASEMLRQLPSEVKVGRYGGEEFIFVMPSTNLNDATSEMEHLREVIESLEISTP 313 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +G I +TIS G+A II +AD+ALY AK +GRNRVV Sbjct: 314 NGIVIPVTISIGVASLDSDTSRYEEIITQADKALYQAKDNGRNRVV 359 >gi|299531035|ref|ZP_07044448.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298720992|gb|EFI61936.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 534 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 8/162 (4%) Query: 105 RIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 + D L+ L N A + L + ++ S+V DID+FK++ND FGH GD V+ L+ Q Sbjct: 370 KTDPLTKLGNRRSLEAALQKLEASSQIFSVVSIDIDHFKKVNDTFGHDAGDIVLRDLAKQ 429 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + V R+GGEEF +SE A +A LRK +E + + G HITIS Sbjct: 430 MKSVSRADDLPCRVGGEEFLIVLPRTSETTAVQVAERLRKQVEAA---VFEGVG-HITIS 485 Query: 222 AGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 G+A + I T+I AD+ LY AK+ GRNRV +S E Sbjct: 486 LGVASWPNSSSDIPTVIKYADEMLYKAKREGRNRVAVYSQSE 527 >gi|163748525|ref|ZP_02155779.1| cyclic nucleotide phosphodiesterase, putative [Shewanella benthica KT99] gi|161332103|gb|EDQ02780.1| cyclic nucleotide phosphodiesterase, putative [Shewanella benthica KT99] Length = 651 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 13/171 (7%) Query: 94 FISYNRISQLSRI-------DCLSGLLN--HSAFI--SSLGSYNEKLSIVFFDIDYFKQI 142 F++Y + +Q S+I D L+ L N H+ + S ++ ++++ FD D+FK+I Sbjct: 478 FLAYKQ-AQKSKIFSVLALTDHLTQLANRRHTYAVGEQSFSENHDVMALILFDADHFKKI 536 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 NDNFGH VGDK + L++ + VGR+GGEEF ++ ++A +A L Sbjct: 537 NDNFGHDVGDKALTLLANISSSLMRKSDLVGRVGGEEFLVILPHTNLEQATEIAERLVDS 596 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I + ++ + +TISAG+A R + S ++ RAD+ LY+AK SGRN Sbjct: 597 IAMTDLS-DIAEELTMTISAGVAAREQDKSFSDLLQRADKGLYLAKSSGRN 646 >gi|326793993|ref|YP_004311813.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326544757|gb|ADZ89977.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 373 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 96/177 (54%), Gaps = 9/177 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVFFDIDYFKQINDNFG 147 IL+E S N + + + D L+ LLN L + + + I+ DID+FKQINDN+G Sbjct: 190 ILRE---SSNHLEKKAITDELTKLLNRYGMYEKLETPVSRRRHILLMDIDHFKQINDNYG 246 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-S 206 H GD +A ++ + + R GGEEF SS +EA A R++ + + Sbjct: 247 HEAGDLYLAKVAQVITSTVSSEGIAARWGGEEFLVLLSTSSLEEAKHWA---RRVCSDVA 303 Query: 207 QINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++++S G + T+S GI++ ++ I I +AD ALY+AKK GRNR V D+E Sbjct: 304 KLSVSFKGHELKATMSIGISQLGVEDKIHDSISQADAALYMAKKEGRNRYVTAVDLE 360 >gi|319780361|ref|YP_004139837.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166249|gb|ADV09787.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 253 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 92/158 (58%), Gaps = 3/158 (1%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-GSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+++ + D ++G+LN +F ++L GS +++ +++ D D+FK INDNFGH GD + Sbjct: 84 RLAEKASRDDMTGMLNRESFFAALDGSRRKSDRGALLIIDADHFKTINDNFGHLTGDDAL 143 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ + + +GR+GGEEF A +G++EQEA +A +R+ +E + + Sbjct: 144 LLIASAIQRGVRSGDVLGRIGGEEFGAFLVGATEQEAKRVAERIRREVELIRFRPVDERT 203 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I +T+S G + +S ++ AD+ LY AK GRN Sbjct: 204 IPLTVSIGGTVCGEEASVSELMRAADRRLYQAKHQGRN 241 >gi|289208273|ref|YP_003460339.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp. K90mix] gi|288943904|gb|ADC71603.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp. K90mix] Length = 424 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 19/204 (9%) Query: 70 SLVIISITISLLL---GYIS-----GSILKELFISYNRISQLSRIDCLSGLLNH------ 115 SL+ + TI+ +L G IS G + + + I +++ D L+G+ N Sbjct: 225 SLIHLEQTITPVLDDHGKISHYVALGKDVTDRLRMEDEIRRVAHTDWLTGVANRLSLGNT 284 Query: 116 -SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 A I Y LS++ FD+D+FK +ND +GH GD+V+ L+ + +GR Sbjct: 285 LEAEIERSQRYGRPLSLIMFDLDHFKAVNDQYGHEAGDEVLKALAQTVSAELRDADTLGR 344 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 GGEEF + A LA LR+ + S +++ P +T S G+AE + Sbjct: 345 WGGEEFIIVVPETRLVGATALAEKLRQAV--STMSVPGVPG--VTASFGVAELASGDSAK 400 Query: 235 TIIYRADQALYVAKKSGRNRVVCF 258 + RAD+A+Y AK++GR+RVV Sbjct: 401 LLARRADEAMYQAKQAGRDRVVAL 424 >gi|78777974|ref|YP_394289.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78498514|gb|ABB45054.1| response regulator receiver modulated diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] Length = 414 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 8/163 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 I+ + D L+GL N F +++ Y EK +I DID+FK+IND +GH +GD Sbjct: 250 ITNNANRDFLTGLYNRRYFFNNMYPYFEKALTNGNHFAIAMIDIDFFKKINDTYGHEMGD 309 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 K I L+D L V R GGEEF + Q+A +LR+ +ENS +++ Sbjct: 310 KTINKLADILRANTSQDDIVARFGGEEFCIVLKNKTPQQALSHFENLREKVENSFLSLGD 369 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I TIS G+ ++ + I +AD LY AK++GRNR+ Sbjct: 370 EEKITFTISIGVL-LSPEDTLDESINQADMLLYNAKQNGRNRI 411 >gi|83594720|ref|YP_428472.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170] gi|83577634|gb|ABC24185.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum ATCC 11170] Length = 360 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 9/168 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148 + ++ L++ D L+GL N + + G +LS++ D+D+FK IND +GH Sbjct: 190 AARQLETLAKSDPLTGLANRRGLLDAFGGAVLTRSRAPHRLSLLVLDLDHFKSINDRYGH 249 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + + + R+GGEEFA + A +A +RK IE++ + Sbjct: 250 EAGDGVLCHVAHVIKGMIRANDLIARIGGEEFALLLPDTDLAGAREVAEKIRKAIESTAL 309 Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 I G S+ +T+S G+AE + P + + AD LY AKK+GRNRV Sbjct: 310 -IGPGGSLSVTVSIGVAELDPQYPDFAALFSSADHRLYQAKKAGRNRV 356 >gi|152969456|ref|YP_001334565.1| hypothetical protein KPN_00899 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954305|gb|ABR76335.1| hypothetical protein KPN_00899 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 350 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R+ ++ D L+G N +A+++++ L+++ D+DYFK+ ND +GH GD+ Sbjct: 186 QRLESIANQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDEC 245 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISS 212 ++ ++ L + V V R GGEEF G S A +A ++ KI E + +S Sbjct: 246 LSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAAS 305 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S GI PI T+I RAD ALY AK +GRN+ Sbjct: 306 AVASEVTVSIGIVASDGTVPIETLIARADSALYQAKNNGRNQ 347 >gi|88811713|ref|ZP_01126967.1| response regulator [Nitrococcus mobilis Nb-231] gi|88791104|gb|EAR22217.1| response regulator [Nitrococcus mobilis Nb-231] Length = 499 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 10/170 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ L D L+GLLNH+ LG L+ D+D FK +ND +GHP Sbjct: 324 RKLRSLMLTDNLTGLLNHTCTKEQLGKELARAIRRQTPLAFAMVDLDDFKAVNDTYGHPA 383 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQIN 209 GD+VI L+ +VGR GGEEFA S+ ++ +++R SQI Sbjct: 384 GDRVIKTLARLFKQRLRRSDYVGRYGGEEFAVIMPESTAEDGKRTLDEIRIAFGRISQIA 443 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ + + SAG+A + + ++Y ADQALY AK++GRNR+V + Sbjct: 444 LNG--TFQASFSAGVAAFPEIDDSTDLMYWADQALYKAKQTGRNRIVIYE 491 >gi|311696891|gb|ADP99764.1| GGDEF domain membrane protein [marine bacterium HP15] Length = 351 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 9/169 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 S +R+ ++++ D L+GL N + ++ LS++ D+D+FKQ+ND GH Sbjct: 173 SESRLLKMAQTDALTGLANRARLSDVFEQERKRSLRNGTPLSVLVLDLDHFKQVNDQHGH 232 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD + ++ L RLGGEEFA ++ +A +A+ +R IE+ + Sbjct: 233 EAGDLALRHVASTLRASLRATDLATRLGGEEFAILLTNTTADQAHRVADKIRGAIESHPV 292 Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SI +TIS GIA+ + ++I RADQ LY AK SGRNR++ Sbjct: 293 PYQDQ-SIGLTISGGIAQFGPDGGDLRSLIGRADQYLYHAKDSGRNRII 340 >gi|255026923|ref|ZP_05298909.1| hypothetical protein LmonocytFSL_12406 [Listeria monocytogenes FSL J2-003] Length = 363 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 11/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-SYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N F S+ ++N LS++ DIDYFK++ND +GH VG+ Sbjct: 190 LQQSTILDPLTGLTNFRHFESAFDVAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 249 Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 250 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 309 Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA + S ++ ADQALY AK++GRN+V Sbjct: 310 ASGSV-ITISAGIANYDGRNYPSANELLNAADQALYNAKRNGRNQV 354 >gi|299535509|ref|ZP_07048830.1| diguanylate cyclase [Lysinibacillus fusiformis ZC1] gi|298728709|gb|EFI69263.1| diguanylate cyclase [Lysinibacillus fusiformis ZC1] Length = 325 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N F L + E S+ DID+FK++ND +GH VGD V Sbjct: 163 ELSMTDKLTGLKNRRFFQEQLEQHFNRFYETAEPFSLCILDIDHFKKVNDTYGHQVGDDV 222 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L+ L + V R GGEEF + A + +R +E P Sbjct: 223 LVQLAQLLQIQVRLEDIVARYGGEEFMIILPETEIPVAKEIGEKIRHTVEQ-----DGWP 277 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +TIS GIA ++ +T+I +AD+ALY +K+ GRN+V F +I+ Sbjct: 278 TGSLTISMGIATVTSEDTETTLIKKADKALYESKEHGRNKVTHFHEIK 325 >gi|262193644|ref|YP_003264853.1| diguanylate cyclase [Haliangium ochraceum DSM 14365] gi|262076991|gb|ACY12960.1| diguanylate cyclase [Haliangium ochraceum DSM 14365] Length = 732 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 11/191 (5%) Query: 81 LLGYISGSILKELF--ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131 +LG I+ + L + Y + ++ D L+GL NH F L + +I Sbjct: 533 MLGIIANQVAVSLQNGMMYKTMETMATTDGLTGLTNHRTFQDRLVQLLDRAERTRQPAAI 592 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + D+D+FK +ND +GHP+GD+V+ ++ L+ R GGEEFA + + Sbjct: 593 LLCDVDHFKNVNDTYGHPIGDEVLRQVAGVLLRSVRKIDIPARYGGEEFAVVLEATDLEG 652 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250 A LA +RK + ++ GP +T+S GIA + +I RAD ALY+AK+S Sbjct: 653 AMNLAERIRKDVAALVVDSDKGP-FQVTMSIGIASFPDDATDRAVLIERADSALYLAKES 711 Query: 251 GRNRVVCFSDI 261 GRNR + + + Sbjct: 712 GRNRCMSYQTL 722 >gi|158422365|ref|YP_001523657.1| putative diguanylate cyclase (DGC) [Azorhizobium caulinodans ORS 571] gi|158329254|dbj|BAF86739.1| putative diguanylate cyclase (DGC) [Azorhizobium caulinodans ORS 571] Length = 566 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 14/217 (6%) Query: 53 IGLTPFYGLEYILVENLSLVIISITI-SLLLGYISGSILKELFISYNR-----ISQLSRI 106 IG P + L N ++ +S + SLL S E+F + + +L+ Sbjct: 342 IGRDPKITMLPRLRGNADVMHLSYALRSLLRRLTSAETRYEMFSRKHEQDVAALKELADT 401 Query: 107 DCLSGLLNHSAFIS----SLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GLLN +F++ +L S + +L I+ DID+FKQ+ND +GH GD V+ ++D Sbjct: 402 DPLTGLLNRRSFLAMADVALDSAHATGQLGILMADIDHFKQVNDTYGHAAGDAVLKHVAD 461 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 V + R GGEEF A + LA +R+ + +++ + +I +TI Sbjct: 462 TFVRTLRAHDHLARFGGEEFVALLQDTDIAGMQALAERVREAVAATKV-VFEDQAIAVTI 520 Query: 221 SAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G A + +I RAD ALY AK SGRNR+V Sbjct: 521 SIGAALAHDQDRDMHKVIERADLALYEAKNSGRNRIV 557 >gi|42784588|ref|NP_981835.1| GGDEF domain-containing protein [Bacillus cereus ATCC 10987] gi|42740520|gb|AAS44443.1| GGDEF domain protein [Bacillus cereus ATCC 10987] Length = 352 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 18/204 (8%) Query: 65 LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118 L++++ +V + + S++ GYI+ +L+ ELF ++ Q + ID L+GL N F Sbjct: 150 LIKDIHIVGLYLVSSIITGYITFISANYVLQSNELF---QKMKQYATIDALTGLGNVRQF 206 Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 I + N+ L ++ DID+FK +ND +GHP GD+V+ + L V P Sbjct: 207 DLEMNHHIGNKRMKNDSLCLLLIDIDHFKCVNDTYGHPAGDEVLKQIGSILREVSPFPNL 266 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 R GGEEFA +R +EN + +G I IT+S G++ ++E Sbjct: 267 SFRKGGEEFALLIPKKGLAYGMHTGEKVRTAVENHSFELLNGTKIKITVSVGVS--VYEE 324 Query: 232 PISTIIYRADQALYVAKKSGRNRV 255 I AD ALY +K++GRN+V Sbjct: 325 SPEQFIQAADDALYYSKRNGRNQV 348 >gi|13471467|ref|NP_103033.1| hypothetical protein mll1446 [Mesorhizobium loti MAFF303099] gi|14022209|dbj|BAB48819.1| mll1446 [Mesorhizobium loti MAFF303099] Length = 263 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F +L Y E+ + ++ D+D+FKQ+ND GH VGD+V+ ++ Sbjct: 107 DSLTGMQNRRYFDDALKEYLEEFRRIEKPVGLMILDLDHFKQVNDTHGHDVGDEVLRAVA 166 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + V RLGGEEFA A A +RK I N I +S + IT Sbjct: 167 SCLKDMTRYHDVVARLGGEEFAVVTPNMEADLLAKFAERIRKAIANMSI-LSGNVRLKIT 225 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A KE RAD+ LY AK+ GRNRV Sbjct: 226 TSVGLAVWDRKETAEEFYRRADRQLYEAKRLGRNRV 261 >gi|296448069|ref|ZP_06889972.1| diguanylate cyclase [Methylosinus trichosporium OB3b] gi|296254426|gb|EFH01550.1| diguanylate cyclase [Methylosinus trichosporium OB3b] Length = 392 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 13/157 (8%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F ++S + + ++V D+D+FK++ND FGH VGD V+ + + Sbjct: 225 DQLTGLLNRRGFDLACASRLASAKAGRDPTTVVLLDLDHFKRVNDRFGHAVGDDVLRYFA 284 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HI 218 L + GR+GGEEF G+ +A +R+ + ++++ P + I Sbjct: 285 ALLRLTTPEGALAGRMGGEEFVVFLHGAPLARGRRVAETIRR---AAALHVT--PRLPPI 339 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+AE E S + RAD+ALY AK GRNRV Sbjct: 340 TVSIGVAEIAADETFSHAMRRADEALYRAKTLGRNRV 376 >gi|283777873|ref|YP_003368628.1| diguanylate cyclase [Pirellula staleyi DSM 6068] gi|283436326|gb|ADB14768.1| diguanylate cyclase [Pirellula staleyi DSM 6068] Length = 352 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 8/176 (4%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 I+ S L N+I +R D L+GL N AF +S + L +V D+D Sbjct: 112 IAESTLARQASEINQIMNEARTDALTGLANRRAFDDEFARRLSQWKRHGTALMLVLVDVD 171 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK +ND +GH GD V+ L L V R GGEEFA + S + AI Sbjct: 172 HFKPVNDQYGHQAGDAVLKQLGKLLSAAVRDTDLVARYGGEEFAILLVDSGIEGGAITIA 231 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +++ I +S G ++ IT S G+A+ + +I RAD+ALY AK GRN Sbjct: 232 RIQQAIASSTFR-HEGVALRITASFGLAQPSASDDQKQLIARADEALYAAKHGGRN 286 >gi|254481121|ref|ZP_05094367.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148] gi|214038916|gb|EEB79577.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148] Length = 400 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 14/193 (7%) Query: 77 TISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126 T+S LG ++ S+ K+L + +++ L+ ID L+GL N ++L Sbjct: 204 TMSQELGDLTASLRDRNKQLRDARRQLTDLANIDELTGLGNRRLVNTALKEEINRARRSG 263 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAAL 185 LS+V D+DYFK ND +GHP GD V+ L++ + V R GGEEF Sbjct: 264 TNLSVVLLDVDYFKNYNDTYGHPAGDTVLQKLANIMTKATSRAGEVVARYGGEEFILLLP 323 Query: 186 GSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPI--STIIYRADQ 242 G+S A AN L++++E I + +S + +T+S G+ + S +I RAD+ Sbjct: 324 GASHDSAMRTANRLKELVELEAIPHENSSVADVLTVSQGVVTVQPDGDMLPSEVISRADK 383 Query: 243 ALYVAKKSGRNRV 255 ALY AKK+GR+R+ Sbjct: 384 ALYEAKKTGRDRI 396 >gi|169827553|ref|YP_001697711.1| response regulator receiver domain-containing protein [Lysinibacillus sphaericus C3-41] gi|168992041|gb|ACA39581.1| response regulator receiver domain protein (CheY-like) [Lysinibacillus sphaericus C3-41] Length = 589 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 13/196 (6%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--------SAFISSLGS 124 I+ T++ L Y KEL + + L+ D L+ + N F + GS Sbjct: 385 IMQETLNETLEYKVQERTKELESAKLELEALANTDRLTQIPNRVRLDDVLEKEFEQATGS 444 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 LSI+ DID+FK +ND FGH VGD V+ +D L VGR GGEEF Sbjct: 445 -GTPLSIILLDIDHFKAVNDEFGHQVGDLVLRHAADLLKNYVRVEDTVGRWGGEEFLVVC 503 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + ++A L+ +LR+ +E + H T S G+ + I +++ R D+AL Sbjct: 504 PRTPLKDAVHLSENLRQQLEQHSFPVVH----HKTSSFGVTSFVMGDTIHSLLSRCDKAL 559 Query: 245 YVAKKSGRNRVVCFSD 260 Y AK+ GRNRV F D Sbjct: 560 YKAKEHGRNRVEYFQD 575 >gi|237807058|ref|YP_002891498.1| diguanylate cyclase [Tolumonas auensis DSM 9187] gi|237499319|gb|ACQ91912.1| diguanylate cyclase [Tolumonas auensis DSM 9187] Length = 557 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 20/215 (9%) Query: 65 LVENLSLVIISITISLLLGYISGSILK----------ELFISYNRISQLSRIDCLSGLLN 114 L+ L + I+ I+LLL I+ I + + ++ +LS D L+GL N Sbjct: 329 LLRYLRIATIASIIALLLAGIATWIYRINRRLTREIAAREAAEQQLRRLSETDALTGLAN 388 Query: 115 HSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 AF L Y SIV DID FK+IND +GHP GD V+ + +L Sbjct: 389 RRAFDQQLHKEFQRFLRYRHTFSIVMIDIDLFKRINDTYGHPAGDHVLTEFAWRLRDHIR 448 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--SGPSIHITISAGIA 225 + R+GGEEFA + EA L++II + +S + + IT S GI+ Sbjct: 449 KTDILARIGGEEFAIMLPETYPWEAKKRTLLLQQIISKTPFKLSDTTDTPVMITASFGIS 508 Query: 226 ERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259 + I+ + RAD ALY AK +GRN+V+ F+ Sbjct: 509 SVAENDLIADAALIRADTALYEAKNNGRNQVILFN 543 >gi|83648643|ref|YP_437078.1| response regulator [Hahella chejuensis KCTC 2396] gi|83636686|gb|ABC32653.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 538 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 79/159 (49%), Gaps = 8/159 (5%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH S I+ E L DIDYFK+IND GHPVGD+V+ +S Sbjct: 380 DSLTGLYNHTHTLNLLSMEINKANQTGEPLCFAMMDIDYFKRINDTHGHPVGDRVLKSMS 439 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L +GR GGEEFA + E +A + ND+R+ ++ + + +T Sbjct: 440 LFLKQRLRKTDHIGRYGGEEFAVVLPNTDECDAKNMMNDIRERF-GELMHPTESDTFKVT 498 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S GIA + +AD+ALY AK +GRN V F Sbjct: 499 FSCGIAAYQAGNTQQVLAQKADKALYEAKHAGRNCVKVF 537 >gi|299542033|ref|ZP_07052352.1| transmembrane protein [Lysinibacillus fusiformis ZC1] gi|298725456|gb|EFI66101.1| transmembrane protein [Lysinibacillus fusiformis ZC1] Length = 522 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 8/156 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 S +D L+G+ N S L + +I+ D+D+FK +ND +GH VGDKV+ FL+ Sbjct: 363 STVDPLTGITNRRTMDSMLAEWLASKVPHAIILLDLDHFKSVNDTYGHAVGDKVLQFLAR 422 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 Q+ V R GGEEF ++ +EA ++A LRK + ++ ++ P IT+ Sbjct: 423 QMESVAREGDVCCRYGGEEFVILLPNTTIEEATLVAEQLRKTLADT-VSPCGRP---ITL 478 Query: 221 SAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 SAGIA +I AD ALY+AK+ GRN+V Sbjct: 479 SAGIAAYPAMAHTTEALIEAADDALYLAKQEGRNQV 514 >gi|193222416|emb|CAL63012.2| Conserved hypothetical protein; putative GGDEF domain [Herminiimonas arsenicoxydans] Length = 362 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 100/181 (55%), Gaps = 18/181 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHS----AFISSLGS---YNEKLSIVFFDIDYFKQIND 144 E I+ R+ + D L+G+ N + +G + LS ++ D+D+FK++ND Sbjct: 181 ENVINNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAMYIDLDFFKKVND 240 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH GD+V+ ++ ++ +GR GGEEF + + + A +A +R I Sbjct: 241 NYGHQGGDEVLREVAARIKAELRLSDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIA 300 Query: 205 NSQINISSGPSIHITISAGIA-----ERCHKEPISTI----IYRADQALYVAKKSGRNRV 255 N + +SSG + +++S G++ ER K+ ++TI + +ADQALY+AK+ GRN+V Sbjct: 301 NRPLVLSSGEQLRLSVSIGVSTLQAIER--KDEVATIAQQLLAKADQALYLAKQGGRNKV 358 Query: 256 V 256 + Sbjct: 359 M 359 >gi|127511386|ref|YP_001092583.1| diguanylate cyclase [Shewanella loihica PV-4] gi|126636681|gb|ABO22324.1| diguanylate cyclase [Shewanella loihica PV-4] Length = 323 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 24/251 (9%) Query: 32 SIFFSIFIATVIFIANIFLFYIG-LTPFYGLEYILVENLSLVIIS------ITISLLLGY 84 S+F A + + ++F G P G + +N++L+ +S IS+++ Sbjct: 75 SVFLLKNRAFISWEQRPYVFKFGNYRPITGRADFMYQNVTLLPLSSLTGQITHISMIIYD 134 Query: 85 ISGSILKELFI--SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135 ++ + +L + + R+ LS+ D L+ L N + Y E ++V FD Sbjct: 135 VTDVAINKLQLKAANERLEHLSQTDGLTQLHNRRHWQLCMQKEFDRHARYGEPTTLVMFD 194 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK+IND +GH GD+VI +S L GR GGEEF+ ++ + A Sbjct: 195 IDHFKRINDTYGHIAGDRVIQHVSHILRQSLRDTDCAGRYGGEEFSVVLSNTNAEAALHF 254 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSG 251 A+ LR+ IE S++ S + +T+S GI C H + + +AD ALY AK+ G Sbjct: 255 ADRLREKIEASELRFESA-ILKVTVSIGI---CGIDEHLSNSAQWLGQADSALYQAKQKG 310 Query: 252 RNRVVCFSDIE 262 RN V F+ E Sbjct: 311 RNCCVIFNPDE 321 >gi|315291820|gb|EFU51172.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1] Length = 472 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + L+++ DIDYFK INDN+GH GDKV++ + + + G V R+GGEEFA A Sbjct: 329 TQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHIQKIVGDKGLVARMGGEEFAVAVP 388 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRA 240 + + ++A +RK +E ++++T+S G+ C + + ++ A Sbjct: 389 SVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSIGVGSGCASYRTLTDDFNKLMVEA 447 Query: 241 DQALYVAKKSGRNR 254 D LY +KK GRNR Sbjct: 448 DTCLYRSKKDGRNR 461 >gi|284051603|ref|ZP_06381813.1| GGDEF domain protein [Arthrospira platensis str. Paraca] gi|291566315|dbj|BAI88587.1| putative diguanylate cyclase [Arthrospira platensis NIES-39] Length = 396 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/181 (38%), Positives = 96/181 (53%), Gaps = 23/181 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQIN 143 +EL ++ ++ QLS ID L+GLLN S L +Y+++ LSI+ DID+FK+IN Sbjct: 220 RELLVANKKLEQLSTIDELTGLLNRRFLNSRLEQEIAYHQQMGFPLSIMLIDIDHFKKIN 279 Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 D FGH GD V +A L++QL+ V R GGEEF S +A +A LR Sbjct: 280 DQFGHLAGDYVLQKVAKLTNQLLRVNDLAF---RYGGEEFMVLLPRSEILQALDMAERLR 336 Query: 201 KIIENSQINISSGPS-IHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 I N PS IT S G++E RC + ++ +AD ALY AK GRN+ Sbjct: 337 VSISQLYFNHPDIPSDFQITASFGLSELTKDLRC----LDDLLKQADLALYQAKSQGRNQ 392 Query: 255 V 255 V Sbjct: 393 V 393 >gi|46201635|ref|ZP_00054632.2| COG3706: Response regulator containing a CheY-like receiver domain and a GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 477 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 9/169 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +++ L+ D L+G LN AF + Y +S++ DID+FKQ+ND GH V Sbjct: 309 SQLRHLATTDELTGCLNRRAFFVVAEQELERASRYGGSVSVLMIDIDHFKQVNDRHGHAV 368 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + + + GRLGGEEFAA + A ++A LR+ + + + Sbjct: 369 GDRALKAATAAIRANLREIDSFGRLGGEEFAAMLPETPLAGALLVAERLREAVAAIVLPL 428 Query: 211 SSGPS-IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257 + + +T S G+AER +E + I+ RAD ALY AK GRNRV+ Sbjct: 429 GENEAPLRLTTSLGVAERRAEETSLDQILARADTALYRAKAEGRNRVLA 477 >gi|86740196|ref|YP_480596.1| diguanylate cyclase [Frankia sp. CcI3] gi|86567058|gb|ABD10867.1| diguanylate cyclase (GGDEF domain) [Frankia sp. CcI3] Length = 562 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 5/133 (3%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 LS++ DID+FK++ND FGH +GD ++ ++D L VGR GGEEF Sbjct: 422 GRPLSVLLVDIDHFKRVNDRFGHLIGDVILIAVADALRAATRPRDLVGRFGGEEFVVLLT 481 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQ 242 + AA +A +R+ + + + P + +T+S G+A H P ++ +I RAD Sbjct: 482 EVELENAADVAERIRRQVAGTHCRLEGRPPLSVTVSVGVA--THHGPRGDLAGLIARADS 539 Query: 243 ALYVAKKSGRNRV 255 ALY AK GRNRV Sbjct: 540 ALYRAKADGRNRV 552 >gi|325109040|ref|YP_004270108.1| diguanylate cyclase and metal dependent phosphohydrolase [Planctomyces brasiliensis DSM 5305] gi|324969308|gb|ADY60086.1| diguanylate cyclase and metal dependent phosphohydrolase [Planctomyces brasiliensis DSM 5305] Length = 702 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 12/170 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK---------LSIVFFDIDYFKQINDNFGHPVGD 152 Q SR D L+G+ N + L + ++ S+++ DID+FK INDN+GH VGD Sbjct: 403 QASR-DALTGIANRGELENQLANIMDRYLADPQGSIFSVIYLDIDHFKSINDNYGHAVGD 461 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ L+ L + R GGEEF +AA A R +E +++ Sbjct: 462 EVLVELAKLLRQEAYSNELAARYGGEEFVVLCPELELMQAAGRAERFR--LEIAKLRFKG 519 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 P + IT S G+A+ +E + +++ RAD+ALY +KK+GRNR E Sbjct: 520 APDLRITSSFGVAQIESQEKLDSVLKRADKALYESKKNGRNRTTVLRREE 569 >gi|209885875|ref|YP_002289732.1| ggdef domain protein [Oligotropha carboxidovorans OM5] gi|209874071|gb|ACI93867.1| ggdef domain protein [Oligotropha carboxidovorans OM5] Length = 541 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 7/180 (3%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYFK 140 S+ ++ I +R++ L+ D L L N FI ++ + + L+++ D D FK Sbjct: 322 SLFEDRRILIDRLTHLASWDSLVELPNRRHFIEVAEQEIAIARRDSRNLALLILDADNFK 381 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND +GH GD + ++ V P GR+GGEEFA S EA+ A LR Sbjct: 382 TLNDQWGHAAGDAALRMIALACASVSPRPDCAGRIGGEEFAMLLPAMSVAEASDFAEMLR 441 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I + + I+ +I++T+S G++ + ++ ADQALY AK GRN+VV D Sbjct: 442 AQIAATPVQIAPDTTIYVTVSIGVSAFGAHADLCAMMRAADQALYTAKGRGRNKVVQADD 501 >gi|83945515|ref|ZP_00957862.1| stalked-cell differentiation controlling protein [Oceanicaulis alexandrii HTCC2633] gi|83851091|gb|EAP88949.1| stalked-cell differentiation controlling protein [Oceanicaulis alexandrii HTCC2633] Length = 450 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 16/167 (9%) Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++S D L+GL N +S L + +E L+ DID+FK+IND +GH GD+V Sbjct: 281 EMSVRDALTGLFNRRYTVSRLRQALDGLRANHEPLTTALIDIDHFKRINDTWGHNAGDQV 340 Query: 155 I----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + A L++QL + GR GGEEF ++ +EA R + + + + Sbjct: 341 LKEICARLNEQLRAID----IAGRYGGEEFLVVFSNTTAREACDAMERARLAVCATPVTL 396 Query: 211 -SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +G I++T+S G+AE + + +I RAD ALY AK+SGRNRV+ Sbjct: 397 RETGDIINVTMSVGVAEAFMDDSVEALIERADTALYDAKRSGRNRVI 443 >gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas arsenicoxydans] Length = 314 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 100/181 (55%), Gaps = 18/181 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHS----AFISSLGS---YNEKLSIVFFDIDYFKQIND 144 E I+ R+ + D L+G+ N + +G + LS ++ D+D+FK++ND Sbjct: 133 ENVINNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAMYIDLDFFKKVND 192 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH GD+V+ ++ ++ +GR GGEEF + + + A +A +R I Sbjct: 193 NYGHQGGDEVLREVAARIKAELRLSDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIA 252 Query: 205 NSQINISSGPSIHITISAGIA-----ERCHKEPISTI----IYRADQALYVAKKSGRNRV 255 N + +SSG + +++S G++ ER K+ ++TI + +ADQALY+AK+ GRN+V Sbjct: 253 NRPLVLSSGEQLRLSVSIGVSTLQAIER--KDEVATIAQQLLAKADQALYLAKQGGRNKV 310 Query: 256 V 256 + Sbjct: 311 M 311 >gi|88800236|ref|ZP_01115804.1| hypothetical protein MED297_14102 [Reinekea sp. MED297] gi|88777082|gb|EAR08289.1| hypothetical protein MED297_14102 [Reinekea sp. MED297] Length = 606 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 11/179 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + R+ LS+ D L+GL N A + LS++ DID+FK IN Sbjct: 424 RELEAKHQRVKLLSQTDHLTGLYNRQSLDNRTKALFEQAEQSDSHLSLIMMDIDHFKPIN 483 Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH VGD+ + ++ L + + R GGEEF +S + A L D+ Sbjct: 484 DRFGHQVGDECLVHVASFLRGLNLRHKDLIARFGGEEFTIVLPDTSIEHAQHLIEDVCTR 543 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259 + ++ S I +T S GIAER + S +I +ADQALY AK++GRNRV + Sbjct: 544 LSKETVS-GSHYEIQLTASFGIAERVISQAPSYEELIQKADQALYQAKQNGRNRVEVYQ 601 >gi|311279747|ref|YP_003941978.1| diguanylate cyclase [Enterobacter cloacae SCF1] gi|308748942|gb|ADO48694.1| diguanylate cyclase [Enterobacter cloacae SCF1] Length = 377 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 122/264 (46%), Gaps = 38/264 (14%) Query: 24 PHTFMIYFSIFFSIFIATVI---FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80 P T ++ F+ S++ I FIA I+L + ++ FY NL+ VI + L Sbjct: 124 PFTALLLFTALISLYFDPRILLGFIAPIWLTVLVMSLFY------TANLT-VINAFMWVL 176 Query: 81 LLGYISG--SILKELFISYNRISQ-----------LSRIDCLSGLLNHSAFISSLGSYNE 127 L G I +L F+ R Q L+ D L+G+ N AF S + Sbjct: 177 LAGLIESGRQMLNRWFLLALRHQQENADLIDQLELLANRDPLTGIANRRAFESRMDQEIA 236 Query: 128 K-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL----VVVFGTPMFVGRLG 176 + +++ D+D+FK ND +GH GD+ + ++ L + V G P GR G Sbjct: 237 RHKREGGTFTLIMLDVDHFKLYNDYYGHQRGDRCLVTIAQCLARAALPVTGIP---GRFG 293 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPIST 235 GEEF S+ EA +A D+ + + I + P + +T+S G+A T Sbjct: 294 GEEFVLLLPRSTPSEALDVARDIAQEMRLQNIEHLTSPVLPRVTVSLGVASWSEGMKART 353 Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259 +I+ AD+ALY AK+ GRNR V F Sbjct: 354 LIHNADKALYQAKQQGRNRWVLFE 377 >gi|300113126|ref|YP_003759701.1| response regulator receiver modulated diguanylate cyclase [Nitrosococcus watsonii C-113] gi|299539063|gb|ADJ27380.1| response regulator receiver modulated diguanylate cyclase [Nitrosococcus watsonii C-113] Length = 641 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 15/181 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQI 142 L +L ++ R+ Q++ D L+GL N + + Y S + D+DYFKQ+ Sbjct: 459 LADLAVANRRLGQMAMTDSLTGLPNRRYAMERMEQAWAEYERNQNPFSCLVIDLDYFKQV 518 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD V+ +++ + + RLGGEEF A ++ EA +A LR+ Sbjct: 519 NDQYGHEAGDGVLREIANVFRSSARSSDIICRLGGEEFLAVCPDTASAEAFHVAERLRRA 578 Query: 203 IEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258 +E + +N + SI I ++ + E H +YR ADQALY AK+SGRNRV Sbjct: 579 VEEHRWTSLNSTGALSISIGLATSLEEMQH----WNDLYRLADQALYQAKRSGRNRVCMA 634 Query: 259 S 259 S Sbjct: 635 S 635 >gi|228936701|ref|ZP_04099492.1| GGDEF domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822910|gb|EEM68751.1| GGDEF domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 351 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 S+F + F N++ +I P +L +++S+V++ + S + YI+ +L+ Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVVLYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F I + N L ++ DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L V P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|146311462|ref|YP_001176536.1| diguanylate cyclase [Enterobacter sp. 638] gi|145318338|gb|ABP60485.1| diguanylate cyclase [Enterobacter sp. 638] Length = 473 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 102/202 (50%), Gaps = 24/202 (11%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEK 128 S+ I L L + S+ + I Y + Q S D L+ L N S F SL + + Sbjct: 261 SLLIILTLLHDVFSLYRNSHIKYQQSYQNSIRDALTRLYNRSYFYESLNQALGKITDSHP 320 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S++ D+DYFK+INDN+GH GDKV+ F+++ L+ R+GGEEF + Sbjct: 321 VSVIVCDLDYFKRINDNYGHLQGDKVLQFVANLLMDSVRPQDITARIGGEEFVLLLSNTH 380 Query: 189 EQEAAILANDLRKIIEN-SQINISSGPSIHITISAGI---------AERCHKEPISTIIY 238 + A ++A +R + + +I +TIS GI AE C + Sbjct: 381 SEAARLVAERIRLSLSSFDRITTEGMLPESVTISMGIYTATTLPVTAEEC--------VE 432 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 RAD+A+Y AK++GRNRVV + + Sbjct: 433 RADKAMYEAKETGRNRVVVYQE 454 >gi|316935559|ref|YP_004110541.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315603273|gb|ADU45808.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 359 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 9/180 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140 S + ++ + + +L+ D ++G+ N F++ Y +S + DIDYFK Sbjct: 145 SDVTDIVRNAEELERLATTDGMTGVYNRRHFLTLADREWARARRYQRPMSFLMIDIDYFK 204 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND FGH VGD++I L+ + RLGGEEFA + +A ++A LR Sbjct: 205 AINDGFGHQVGDEMIVHLARLARDCKRDCDVLARLGGEEFALLLPETDLAQAQVVAERLR 264 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + + + ++S SI T+S G+A + +S ++ ADQALY AK +GRNRV+C + Sbjct: 265 REVAANALVVASR-SIPATVSIGVATALPGMDDVSELMKAADQALYDAKHAGRNRVICRA 323 >gi|192362294|ref|YP_001983295.1| YaiC/YhcK/ArdA family protein [Cellvibrio japonicus Ueda107] gi|190688459|gb|ACE86137.1| YaiC/YhcK/ArdA family protein [Cellvibrio japonicus Ueda107] Length = 330 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 19/246 (7%) Query: 35 FSIFIATVIF-IANIFLFYIGLTPFYGLEYILVENLSLVIISITI----SLLLGYISGSI 89 F +F+ V+ +A + + + + F E+ L + ++ ++ + L +G I+ Sbjct: 86 FRLFLRGVVTSLAGLLMGLLVVRSFLHWEFNLSSDPVMIYAALPMLVIYPLAIGSITYRF 145 Query: 90 LKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQI 142 +L + LSR D L+GL N S A I+ + L +V D+D+FK I Sbjct: 146 AMQLHSQKELLKHLSRTDGLTGLFNRSYWEERVLALINQTQRSGQPLCLVLLDVDHFKMI 205 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD+++ ++ L V +GR GGEEFA A +S A A LR+ Sbjct: 206 NDTYGHGRGDQILQQIAQCLQVNLREHELLGRYGGEEFALALANTSLPAALATAERLRQA 265 Query: 203 IENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYR--ADQALYVAKKSGRNRVVC 257 + P + +IS G+A + IS + ++ ADQALY AK+ GRNR Sbjct: 266 VATMNFADEHEPRLAPLCCSISLGLAP--WQPGISFLEWQRAADQALYQAKREGRNRSCI 323 Query: 258 FSDIEN 263 + E+ Sbjct: 324 YQPQES 329 >gi|254465270|ref|ZP_05078681.1| response regulator PleD [Rhodobacterales bacterium Y4I] gi|206686178|gb|EDZ46660.1| response regulator PleD [Rhodobacterales bacterium Y4I] Length = 464 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 10/161 (6%) Query: 106 IDCLSGLLNH---SAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D ++GL N F+ S + EK +++ D+D+FK+IND +GHP GD V+ Sbjct: 295 LDPMTGLYNRRYAKPFLDRVAHSAAANGEKFAVMLADLDHFKRINDVYGHPAGDAVLIEA 354 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS--QINISSGP-S 215 + ++ V G + R+GGEEF A G+SE EA I A L I + Q+ ++ P Sbjct: 355 ARRMQQVLGPADLLARVGGEEFMAVLPGASEAEAGIAAVALCNAINGTPFQVPGAAEPVK 414 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+I A + ++ + ++ +ADQALY AK +GRN+V Sbjct: 415 VTISIGAVMGGGGKEDSTAALVEKADQALYNAKNAGRNQVT 455 >gi|66044408|ref|YP_234249.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63255115|gb|AAY36211.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|330969164|gb|EGH69230.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 418 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N + I ++ + S++ DID+FK +ND +GHP Sbjct: 255 QKLLEIAHSDPLTGLDNRRSAEHTLERQIPAVSMSGKPFSLIICDIDHFKAVNDRYGHPA 314 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI ++ L R GGEEF SS ++AA LA +R +E+ I Sbjct: 315 GDSVITSVAAILKQRIRLLDVAARWGGEEFLILVPDSSLKQAAELAERIRNSVESLVIPE 374 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +TIS G+AE E +++I RAD+ALY AK+ GRNRV C Sbjct: 375 TGS----VTISLGVAELSAGETAASLIQRADKALYQAKRLGRNRVEC 417 >gi|298530671|ref|ZP_07018073.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] gi|298510045|gb|EFI33949.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] Length = 358 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 106/209 (50%), Gaps = 32/209 (15%) Query: 81 LLGYISGSILKELFISYNR-----------ISQLSRIDCLSG-LLNHSAFISSLGSYNE- 127 ++GYI G+I KE+ + + +R D L G L N S F + S E Sbjct: 154 IIGYIRGTI-KEIVTQARKEADSWENKARTLEHYARYDHLLGSLYNRSWFDEKIYSLTEQ 212 Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS----DQLVVVFGTPMFVGRLGG 177 +L+++ D+D+FK IND++GH VGD V+ L+ + V G P R GG Sbjct: 213 ALENNARLALLMIDVDHFKSINDSWGHQVGDDVLKALAKIIKEHAEVGSGYPC---RYGG 269 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIEN-----SQINISSGPSIHITISAGIAERCHKEP 232 EE + EQ A + A +LR+ ++ + + S G SI+ T+S G+AE Sbjct: 270 EELCIIFKDTDEQLAGVQAEELRREVQGYNFIPRKKDGSLGDSINFTVSIGVAELQKDWD 329 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +I AD+ALY AK+SGRNR + FS++ Sbjct: 330 AGMLIGAADKALYHAKESGRNRAILFSEL 358 >gi|54308933|ref|YP_129953.1| sensory box/GGDEF family protein [Photobacterium profundum SS9] gi|46913363|emb|CAG20151.1| hypothetical sensory box/GGDEF family protein [Photobacterium profundum SS9] Length = 326 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 9/172 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGH 148 S +++ LS D L+ L N + + L E+ ++V FDID+FK++ND FGH Sbjct: 146 SNKQLTHLSMTDRLTQLYNRGHWETCLAEEFERCRQTQTPSTLVMFDIDHFKKVNDTFGH 205 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD VI +S+ L GR GGEEF +S + LR+ IE +++ Sbjct: 206 VAGDGVIRIVSNVLRRTKRQSDIAGRYGGEEFGVILPYTSSEMGQYFTERLRQRIEQARV 265 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 N+ SI++TIS G+ E + + AD+ALY++K+SGRN+ F Sbjct: 266 NVDV-RSINVTISLGVCEWYPELRNYEQWLEHADKALYISKQSGRNQSTVFE 316 >gi|323978304|gb|EGB73390.1| GGDEF domain-containing protein [Escherichia coli TW10509] Length = 472 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWLQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|288935188|ref|YP_003439247.1| diguanylate cyclase [Klebsiella variicola At-22] gi|288889897|gb|ADC58215.1| diguanylate cyclase [Klebsiella variicola At-22] Length = 453 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+ L N S F +L K LS++ D+D+FK+INDN+GH GDKVI F + Sbjct: 294 DPLTRLYNRSFFYDTLNQQLAKVNPQHPLSVIISDLDHFKRINDNYGHVAGDKVIQFAAS 353 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L R+GGEEFA + ++E++A +A +R + Q + +TI Sbjct: 354 VLENHSRADDAAARIGGEEFALLLVNTAEKDALAIAERIRLAVNAEQHPLPE----RMTI 409 Query: 221 SAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S G+ R T + RAD A+Y AK SGRNRVV + Sbjct: 410 SMGLYTTRDRNVSAETCVERADAAMYEAKNSGRNRVVVW 448 >gi|192291678|ref|YP_001992283.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris TIE-1] gi|192285427|gb|ACF01808.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris TIE-1] Length = 883 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 89/165 (53%), Gaps = 13/165 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHP 149 S +RI L+ D L+GL N S+F LG ++L++++ DID FK +ND GHP Sbjct: 442 SDSRIHHLAHYDDLTGLPNRSSFRKHLGEALNLIEPGDQLALLYIDIDEFKIVNDTLGHP 501 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDLRKIIENSQ 207 VGD+++ L+D+L G +V RLGG+EFA +S+ + A L LR I+ + Sbjct: 502 VGDQLLQALADRLRNCVGPDDYVARLGGDEFAVVMADASDIREFVAKLQATLRDSIDCAG 561 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 +S SI I ++ H + +I +AD ALY AK GR Sbjct: 562 QVLSPDASIGIALAPD-----HSCEVDDLIAKADLALYAAKAEGR 601 >gi|149374583|ref|ZP_01892357.1| diguanylate cyclase [Marinobacter algicola DG893] gi|149361286|gb|EDM49736.1| diguanylate cyclase [Marinobacter algicola DG893] Length = 372 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 86 SGSILKE----LFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFF 134 +G++L+E F + + D L GL N SA + Y L+I+ Sbjct: 189 AGTLLRERSWSAFARAETLHHWANTDPLCGLANRRGADRFLSAEAAQADRYQRPLTIILI 248 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID FK IND++GH VGD VI + L R GG+EF A G + A Sbjct: 249 DIDEFKSINDDYGHEVGDAVIREFAAILSKTVREVDLAARWGGDEFLVATPGVDLRSARH 308 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 A R+ IE + I + +T + GIAE + I I RAD LY AK +GRNR Sbjct: 309 AAQRCRRAIERAPI-----AGVSVTATVGIAEYLPGQGIEDAISRADAMLYRAKAAGRNR 363 Query: 255 VV 256 V+ Sbjct: 364 VI 365 >gi|39936022|ref|NP_948298.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris CGA009] gi|39649876|emb|CAE28398.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) [Rhodopseudomonas palustris CGA009] Length = 882 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 89/165 (53%), Gaps = 13/165 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHP 149 S +RI L+ D L+GL N S+F LG ++L++++ DID FK +ND GHP Sbjct: 442 SDSRIHHLAHYDDLTGLPNRSSFRKHLGEALNLIEPGDQLALLYIDIDEFKIVNDTLGHP 501 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDLRKIIENSQ 207 VGD+++ L+D+L G +V RLGG+EFA +S+ + A L LR I+ + Sbjct: 502 VGDQLLQALADRLRNCVGPDDYVARLGGDEFAVVMADASDIREFVAKLQATLRDSIDCAG 561 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 +S SI I ++ H + +I +AD ALY AK GR Sbjct: 562 QVLSPDASIGIALAPD-----HSCEVDDLIAKADLALYAAKAEGR 601 >gi|16331738|ref|NP_442466.1| hypothetical protein sll0821 [Synechocystis sp. PCC 6803] gi|12230444|sp|Q55434|PHY2_SYNY3 RecName: Full=Phytochrome-like protein cph2; AltName: Full=Bacteriophytochrome cph2 gi|1673324|dbj|BAA10536.1| sll0821 [Synechocystis sp. PCC 6803] Length = 1276 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 22/236 (9%) Query: 38 FIATVIFIANIFLFYIG---LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94 + V+F N++ I TP Y E E+L L ++ + + + G + ++L Sbjct: 1036 LVVPVVFNENLWGLLIAHECKTPRYWQE----EDLQL-LMELATQVAIAIHQGELYEQLE 1090 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 + R+ Q+S +D L+ + N F S+L E L+++ D+D+FK NDN+G Sbjct: 1091 TANIRLQQISSLDALTQVGNRYLFDSTLEREWQRLQRIREPLALLLCDVDFFKGFNDNYG 1150 Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 HP GD+ + ++D + V P V R GGEEFA +S + A + L+ + N Sbjct: 1151 HPAGDRCLKKIADAMAKVAKRPTDLVARYGGEEFAIILSETSLEGAINVTEALQVEVANL 1210 Query: 207 QINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I + + H+T+S GIA ER H P + ++ AD ALY AK GRN+ + + Sbjct: 1211 AIPHTVSGTGHVTLSIGIAVYTPER-HINP-NALVKAADLALYEAKAKGRNQWLAY 1264 Score = 37.0 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 17/168 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL------GSYNEKL-SIVFFDIDYFKQINDNFGHPVGD 152 I+Q + D L+ L N F L Y K+ ++ +D FK+IN++FGH GD Sbjct: 427 ITQQTAYDPLTQLPNWIIFNRQLTLALLDALYEGKMVGVLVIAMDRFKRINESFGHKTGD 486 Query: 153 KVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206 ++ ++D+L +P+ + R G+ F S QE L L + Sbjct: 487 GLLQEVADRLNQKL-SPLAAYSPLLSRWHGDGFTILLTQISDNQEMIPLCERLLSTFQ-- 543 Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 + G I++T S GI+ + E +++ A+ AL AK G+N Sbjct: 544 EPFFLQGQPIYLTASMGISTAPYDGETAESLLKFAEIALTRAKCQGKN 591 >gi|296134290|ref|YP_003641537.1| diguanylate cyclase [Thermincola sp. JR] gi|296032868|gb|ADG83636.1| diguanylate cyclase [Thermincola potens JR] Length = 379 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 100/201 (49%), Gaps = 16/201 (7%) Query: 74 ISITISLLLGYISGSILKELFISYNRI--------SQLSRIDCLSGLLNHSAFISSLGSY 125 + IT L Y S E SY I QL+ D L+GL N+ F +L Sbjct: 173 MKITSELETAYHQLSASHEQLQSYTEIIEKMNKEMEQLAITDELTGLYNYRYFQIALDKE 232 Query: 126 NEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEE 179 +K +S+ DID FK ND GH +G++++A ++ + V G V R GGEE Sbjct: 233 LKKNKFSVVSLFMLDIDNFKLFNDRHGHLMGNRMLAEIARVIKENVRGVDTAV-RYGGEE 291 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIY 238 FA G E A LA +RKI+EN+ I +G + +T+S G+A + S +I Sbjct: 292 FAVIFPGMDSNEVAQLAERIRKIVENTYIKTGAGEPVSVTVSIGVASYPRDAQTKSELIS 351 Query: 239 RADQALYVAKKSGRNRVVCFS 259 AD ALY AK++GRN+V F Sbjct: 352 HADLALYDAKQAGRNQVCIFK 372 >gi|77360220|ref|YP_339795.1| hypothetical protein PSHAa1277 [Pseudoalteromonas haloplanktis TAC125] gi|76875131|emb|CAI86352.1| conserved protein of unknown function [Pseudoalteromonas haloplanktis TAC125] Length = 394 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 21/179 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGH 148 S +++ L+ D L+ LLN F S+ N L+++ DID+FK++ND +GH Sbjct: 209 SESKLINLANNDSLTQLLNRRGFFSTCKNIKANTADKNHTLALIMLDIDFFKRVNDKYGH 268 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+ + +++ + +F R+GGEEFA G + ++A LA E Sbjct: 269 DVGDQALKWIAQHISQLFMNIGITARIGGEEFAVLLNGYTLEQANTLA-------EQLSF 321 Query: 209 NISSGP------SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 NI P SI +++SAG++ ++ + ++ AD+ LY+AK++GR++VV D Sbjct: 322 NIRQQPFYCNDQSIPLSVSAGVSSTTINQLNLKELLLHADKHLYLAKETGRDKVVSQYD 380 >gi|212639762|ref|YP_002316282.1| Response regulator with a diguanylate cyclase output domain [Anoxybacillus flavithermus WK1] gi|212561242|gb|ACJ34297.1| Response regulator with a diguanylate cyclase output domain [Anoxybacillus flavithermus WK1] Length = 421 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 13/162 (8%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+ N F I Y SI+ FDID+FK++ND +GH VGD V+ Sbjct: 262 LATKDPLTKTFNRLKFDEFFTREIHRAKRYKHTFSIILFDIDHFKKVNDTYGHDVGDLVL 321 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + + + R GGEEF A +S+ A LA LR ++E P+ Sbjct: 322 VRMCEAISNRLRDCDILARWGGEEFIILAPATSQTGAYRLAEALRHLVETVHF-----PT 376 Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + H+T S G+ E ++ RAD+ALY AK++GRNRVV Sbjct: 377 VGHMTCSFGVCEYEQGMTKEQMVKRADEALYEAKRTGRNRVV 418 >gi|152994649|ref|YP_001339484.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150835573|gb|ABR69549.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 320 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 20/183 (10%) Query: 91 KELFISYNR-ISQLSRIDCLSGLLNH-----------SAFISSLGSYNEKLSIVFFDIDY 138 KE + NR + LS++D L+ L N AF S GS+ S+V DIDY Sbjct: 142 KESLSNANRKLDFLSKMDPLTHLYNRGSVDKKLKSVFDAFASRGGSH----SLVMADIDY 197 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK++ND +GHP GD V+ +S L FVGR GGEEF + A Sbjct: 198 FKKVNDQYGHPAGDLVLQAVSKVLGSSIRKTDFVGRYGGEEFVILLPNTDASGALFFCES 257 Query: 199 LRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +RK I + +I ++ I +T+S G++E R K P + R+D+ALY AK +GRN+ V Sbjct: 258 VRKKIADLKIK-TANDEISVTMSFGVSEASRSDKVPCD-WLGRSDEALYKAKGNGRNQSV 315 Query: 257 CFS 259 +S Sbjct: 316 VYS 318 >gi|310659583|ref|YP_003937304.1| hypothetical protein CLOST_2282 [Clostridium sticklandii DSM 519] gi|308826361|emb|CBH22399.1| protein of unknown function [Clostridium sticklandii] Length = 346 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 6/135 (4%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAAL 185 +LSI+ D+DYFK ND +GH GD+ + ++++L V T + V R GGEEF Sbjct: 210 ELSIIMIDVDYFKLYNDTYGHMQGDECLKIVANELNNSVKRATDL-VARYGGEEFVVLLP 268 Query: 186 GSSEQEAAILANDLRKIIENSQ-INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242 + ++EA ++A ++K IEN + I+ S S ++T+S G+A R K P + +I +AD+ Sbjct: 269 NTGKEEAHMMATSMKKNIENLKIIHELSDVSSYVTVSVGVATFNRDTKLPCNMLIQQADE 328 Query: 243 ALYVAKKSGRNRVVC 257 ALY+AK GRN+VV Sbjct: 329 ALYLAKDYGRNQVVA 343 >gi|296272342|ref|YP_003654973.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296096516|gb|ADG92466.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] Length = 366 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142 +KEL R+ L+ D L+ + N +F +L ++ +SI+ DID FK Sbjct: 190 IKELEKVNLRLFDLAHTDYLTQIKNRRSFFLHANSLFQNLKKAHKPMSIIMIDIDNFKNF 249 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH +GDKV+ + + GRLGGEEF A +A D+RKI Sbjct: 250 NDTYGHEMGDKVLKLFAKTISNYLSDDAIFGRLGGEEFIIALPYKKIDSTIPIAEDIRKI 309 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IEN I + + IT S G+++ + I II AD LY AK G+NRV Sbjct: 310 IENLVIRVPYS-ELFITASFGVSDSTNAYTIDEIIKSADDMLYDAKSKGKNRV 361 >gi|91781076|ref|YP_556283.1| diguanylate cyclase [Burkholderia xenovorans LB400] gi|91693736|gb|ABE36933.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 504 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 93/193 (48%), Gaps = 21/193 (10%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141 + + L+ + + L+ D L+GL N F++SL ++++F D+D+FK+ Sbjct: 312 LAERLWAANKELKALALQDALTGLANRRHFVASLDHAMRTAWVDRTAVAVIFIDVDWFKR 371 Query: 142 INDNFGHPVGDKVIA--------FLSDQLVVVFGTPMF----VGRLGGEEFAAAALGSSE 189 ND +GH GD + L+++L F T + V R+GGEEFA + E Sbjct: 372 FNDRYGHERGDAALCAVATALTDALTNELTDAFATDLAQRATVARIGGEEFAIVLPDADE 431 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEP-ISTIIYRADQALYVA 247 A LA I I P ++TIS G+A R E S ++ RAD A+Y A Sbjct: 432 ASATQLAGSALARIRALSIAHEGSPHRNVTISVGVALSRGKAEAGASALLARADAAMYRA 491 Query: 248 KKSGRNRVVCFSD 260 K+ GR+R V +D Sbjct: 492 KREGRDRCVVLAD 504 >gi|331005857|ref|ZP_08329209.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [gamma proteobacterium IMCC1989] gi|330420301|gb|EGG94615.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [gamma proteobacterium IMCC1989] Length = 330 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 23/166 (13%) Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +S+ D L+GLLN + + L Y+E S++ FDID+FK++NDN+GHP GD+VI Sbjct: 158 ISKTDGLTGLLNRKTWENLLEKEYERESRYHENCSLIMFDIDHFKKVNDNYGHPAGDEVI 217 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +D + GR GGEE+ + A +LA +RK I++ P+ Sbjct: 218 RQTADIIRHSIRKTDIAGRYGGEEYVILLPHTPIDSAYVLAERIRK-------KIAAKPA 270 Query: 216 ------IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 I+ T+S G+A + K P + I + ADQALY +K++GRN Sbjct: 271 CYEDQVINYTVSLGVAAFDPSLKSPTNWIDF-ADQALYQSKQAGRN 315 >gi|328545032|ref|YP_004305141.1| diguanylate cyclase (GGDEF domain) [polymorphum gilvum SL003B-26A1] gi|326414774|gb|ADZ71837.1| Putative diguanylate cyclase (GGDEF domain) [Polymorphum gilvum SL003B-26A1] Length = 412 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 R+ +R D L+GL N AF + ++ S+ FD+D FK +ND FGH Sbjct: 220 RRLRIQARRDPLTGLANRRAFFEQAQDWLDRHAATPKTFSVALFDLDDFKSVNDRFGHAA 279 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ ++ GRLGGEEF + A +LA+ LR + Sbjct: 280 GDEMLTTFAEVCRERLRPGDLAGRLGGEEFVLFLPDTPADAALVLADRLRHAFAQAA-ET 338 Query: 211 SSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +G ++ T SAG+ RC ++ + ++ AD ALY AK++GRN+VV Sbjct: 339 RTGGTLAATTSAGVHGGRCGEDDLDRVLAVADAALYSAKRAGRNQVV 385 >gi|153011902|ref|YP_001373115.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] gi|151563790|gb|ABS17286.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] Length = 231 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 22/218 (10%) Query: 53 IGLTPFYGLEYILVENLSLVIISITIS-LLLGYISGSILKELFISYNRISQLSRIDCLSG 111 IG P Y +L I +++ LL+ I+ + KEL + +S+ + D L+G Sbjct: 15 IGAFPVLSQMYEFQPSLRFGIALMSLGPLLVATINAARQKEL----SDLSRAAYFDVLTG 70 Query: 112 LLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSD 160 LL+ SAF L+ + DID+FKQIND GH GDKV+ + D Sbjct: 71 LLSRSAFRERGQKLLRESIVAGRDLTAMMLDIDHFKQINDQNGHASGDKVLIDFAQLVRD 130 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 QL GRLGGEEFA +S ++A +A+ +R ++N+ + + +T+ Sbjct: 131 QLR----EGDLFGRLGGEEFAILLPNTSSRQAEKIASRVRLRVQNATFTGTDNQPLKVTV 186 Query: 221 SAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+ + C + +++ ADQ++Y AK SGRN V+ Sbjct: 187 SMGLVDIADCPSTKLDELLHCADQSMYAAKSSGRNIVI 224 >gi|114563636|ref|YP_751149.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114334929|gb|ABI72311.1| response regulator receiver modulated diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 406 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 2/128 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS+ DID+FK+IND +GH VGD+V+ +L F V R GGEEF A G Sbjct: 279 LSVALLDIDFFKKINDTYGHDVGDEVLIEFVQRLENAFAANFTVARFGGEEFVVAFKGLD 338 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 +A++L N R+ E++ I S+G + ++ S G++ + E + + RAD+ LY AK Sbjct: 339 AIKASLLVNKFREQCESNPIMTSAG-DLSVSFSCGVST-VNNETLDHALQRADELLYKAK 396 Query: 249 KSGRNRVV 256 +GRNRVV Sbjct: 397 NAGRNRVV 404 >gi|294138971|ref|YP_003554949.1| GGDEF domain-containing protein [Shewanella violacea DSS12] gi|293325440|dbj|BAJ00171.1| GGDEF domain protein [Shewanella violacea DSS12] Length = 401 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 84/171 (49%), Gaps = 23/171 (13%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL + A + + S K S+ DID+FK+ ND +GH VGD+V+ ++ ++ V Sbjct: 230 DELTGLASRRALYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLKLVAAKMAQVS 289 Query: 167 GTPMFVGRLGGEEF--------AAAALG-------SSEQEAAILANDLRKIIENSQINIS 211 G V R GGEEF A L S E + +L D R NSQ Sbjct: 290 GGGK-VFRYGGEEFTIVFPRKNAQTILDDLEDVRESIEDYSIVLREDKRTKKSNSQAKAR 348 Query: 212 SGPS-------IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S + +TIS G+AER E + RADQALY AKK GRN++ Sbjct: 349 RSKSKNAGKKTVSVTISIGVAERHSGESFDQALKRADQALYRAKKRGRNQI 399 >gi|293409869|ref|ZP_06653445.1| conserved hypothetical protein [Escherichia coli B354] gi|291470337|gb|EFF12821.1| conserved hypothetical protein [Escherichia coli B354] Length = 472 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 10/165 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR--VVCFSD 260 G+ R + + ++ AD LY +KK GRNR +C+ + Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMCYGE 469 >gi|188997503|ref|YP_001931754.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932570|gb|ACD67200.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp. YO3AOP1] Length = 638 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 7/164 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 Q S D L+GL N + ++ + + K I DIDYFK+IND +GH +GDKV+ +++ Sbjct: 227 KQRSFTDNLTGLYNRN-YLQHIMDF--KYIIALIDIDYFKKINDTYGHAIGDKVLKSVAN 283 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI---IENSQINISSGPSIH 217 + + R GGEEF A +Q+ ++ N +I IE +I I+ G I Sbjct: 284 TMKKLTREEDIFIRYGGEEFLLLAKVDRKQDIQVMLNLFERIRSNIEKLKIPITDGDYIK 343 Query: 218 ITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 TIS G+ +K+ I+ I +AD ALY AK GRNR+ + + Sbjct: 344 TTISIGVYLNTNKDKNINEAIKKADVALYKAKSKGRNRIEIYDE 387 >gi|121997121|ref|YP_001001908.1| PAS/PAC sensor-containing diguanylate cyclase [Halorhodospira halophila SL1] gi|121588526|gb|ABM61106.1| diguanylate cyclase with PAS/PAC sensor [Halorhodospira halophila SL1] Length = 454 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 16/172 (9%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 L +LF + +I QL R + + +H+ F +++ FD+D+FKQ+ND FGH Sbjct: 299 LTDLF-NRAKIQQLLRAAQAAYIRHHTPF-----------AVLLFDVDHFKQVNDRFGHA 346 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ ++ V +GR GGEEF A + E A +LA +R +E + Sbjct: 347 TGDAVLWLMARRIESVLRETDHMGRWGGEEFLILASQTDEAGAEVLAERIRHQVETTAFE 406 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +TIS G+A + ++ RAD+ALY AK GRNR V +S + Sbjct: 407 GVGT----VTISLGVAAAEPGTSLESLEQRADRALYAAKHRGRNRTVRYSQL 454 >gi|15606018|ref|NP_213395.1| hypothetical protein aq_563 [Aquifex aeolicus VF5] gi|2983209|gb|AAC06808.1| hypothetical protein aq_563 [Aquifex aeolicus VF5] Length = 618 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 96/197 (48%), Gaps = 16/197 (8%) Query: 78 ISLLLGYISGSILK-----ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSY 125 + LL+ YI G + + E ++ S ID L+G N ++ Sbjct: 414 VKLLIPYIKGYLREATPVIESKKLMEKLKMQSYIDGLTGAFNRRFLEEIADKIVAQTLRR 473 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N L I+ D+D+FKQ+ND +GH GD+V+ ++ + ++ R GGEEF Sbjct: 474 NSNLGILMIDVDFFKQVNDTYGHDAGDEVLRQIARVIKDNIRKADYLIRYGGEEFLVLLT 533 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQ 242 E A +A LRKIIE + I + + +I T+S GI+E C + + + AD Sbjct: 534 DVKEGYAEKVAEKLRKIIEETPITLPNCQTIRKTVSIGISEFPKDCEGKFWKCVKF-ADV 592 Query: 243 ALYVAKKSGRNRVVCFS 259 ALY AK+ GRNRVV F Sbjct: 593 ALYKAKEEGRNRVVRFK 609 >gi|83313443|ref|YP_423707.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82948284|dbj|BAE53148.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Magnetospirillum magneticum AMB-1] Length = 355 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 8/166 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ N F G +++ DID+FK+IND +GH GD Sbjct: 188 LEELASRDSLTQTANRRHFEHLAGLELDHARRMGRSFALLALDIDHFKRINDTWGHAAGD 247 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + ++ + +GR+GGEEFA A + A ++A LR +E + + Sbjct: 248 EALKAFANACRLSLREYDILGRIGGEEFAVALPNTGPDGARVIAERLRAAVEELVVRPAK 307 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G +T+S GIA+ R + T++ RADQALY AK SGRNRV+ Sbjct: 308 GELFDLTVSIGIAQLREGDLTVETMLERADQALYRAKNSGRNRVMA 353 >gi|315126795|ref|YP_004068798.1| hypothetical protein PSM_A1722 [Pseudoalteromonas sp. SM9913] gi|315015309|gb|ADT68647.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 392 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 112/204 (54%), Gaps = 17/204 (8%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118 GL+ +LV +L L S +L+L +I+ + + +++ L+ D L+ LLN F Sbjct: 183 GLQLLLVSHLFLTTAS---ALILPFIAFANEE------SKLINLANHDPLTQLLNRRGFF 233 Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 I+ N ++S++ DID FKQ+ND +GH GD+ I +++ + +F Sbjct: 234 RLCKKITHTAPLNSRVSLIMLDIDLFKQVNDQYGHETGDEAIKWIAQHINELFFEAGITA 293 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232 R+GGEEFA + +A LA L + I+ +G SI +++SAG++ ++ Sbjct: 294 RIGGEEFAIFLNQKNLTQARQLAQKLCRSIDQYPFYF-NGNSIALSVSAGVSSALIRDLN 352 Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256 + ++ +AD+ LY+AK++GRN+VV Sbjct: 353 MQELLLQADKRLYLAKETGRNKVV 376 >gi|146283894|ref|YP_001174047.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501] gi|145572099|gb|ABP81205.1| GGDEF domain protein [Pseudomonas stutzeri A1501] Length = 466 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 14/163 (8%) Query: 104 SRIDCLSGLLNHSA----FISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S+ D L+GL N +A F ++L Y LSIV DID+FK+IND+FGH +GD+V+ Sbjct: 302 SQTDSLTGLANRAALDRRFATALEQARRYRRPLSIVMLDIDHFKRINDDFGHQMGDRVLR 361 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPS 215 + L VGR GGEEF +S +A A ++ E ++ ++G Sbjct: 362 DFAALLDDCLRGSDAVGRWGGEEFLVLCPETSGPQAVQFAE---RLCEQARAFPFATG-- 416 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + T+SAG+AE + +++ RAD ALY AK GR+R VC+ Sbjct: 417 VSQTLSAGVAELSPSDTPDSLLRRADAALYRAKHEGRDR-VCW 458 >gi|126738872|ref|ZP_01754568.1| hypothetical protein RSK20926_03109 [Roseobacter sp. SK209-2-6] gi|126720053|gb|EBA16760.1| hypothetical protein RSK20926_03109 [Roseobacter sp. SK209-2-6] Length = 789 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 105/210 (50%), Gaps = 14/210 (6%) Query: 67 ENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRI----DCLSGLLNH----SA 117 E+LSL++ S I G Y+ +L R ++ +R D L+GL N Sbjct: 318 EDLSLLVRSGPIRDEHGLYLGTLLLASDHSDQARQAEWARYLAEHDSLTGLPNRRLMEQT 377 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 F S L E++SI+ D+D+FK IND GHP GD ++ ++ + T + RLGG Sbjct: 378 FQSWLQEEAEEVSILLADLDHFKLINDTLGHPAGDALLQVVAQKFKACASTYVLAARLGG 437 Query: 178 EEFAAAALGSSEQEAAILAN-DLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235 +EFA G+S E L N R +IE SQ +G +H +SAGIA + S Sbjct: 438 DEFAILVKGASSLER--LTNIAERLVIEMSQPQEINGQVLHTGMSAGIATLSGPDSKPSE 495 Query: 236 IIYRADQALYVAKKSGRNRVVCF-SDIENN 264 I RAD ALY AK++GR V F D+E Sbjct: 496 GIRRADLALYEAKRAGRGTVEVFHEDLETE 525 >gi|315499758|ref|YP_004088561.1| diguanylate cyclase [Asticcacaulis excentricus CB 48] gi|315417770|gb|ADU14410.1| diguanylate cyclase [Asticcacaulis excentricus CB 48] Length = 352 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 17/163 (10%) Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ L N +F +L + + +++ DID+FK+ ND +GH GD+V+ +++ Sbjct: 184 DALTNLANRKSFDEALERHCDSDEGKNITLAVLDIDHFKRFNDTWGHQTGDQVLRYVASV 243 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLR-----KIIENSQINISSGP 214 L + P R GGEEF A + SE A + L N+ R ++++ N G Sbjct: 244 LSRIGRAPRMAARYGGEEF--AMIFPSENMAVVERLLNEARQEIASRVLKRRSTNEDLGT 301 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ITIS GIAER + E ++ RAD+ALY +K +GRN V C Sbjct: 302 ---ITISVGIAERDYGEDAYDLLDRADKALYQSKNNGRNMVTC 341 >gi|206576162|ref|YP_002238199.1| diguanylate cyclase (GGDEF) domain protein [Klebsiella pneumoniae 342] gi|206565220|gb|ACI06996.1| diguanylate cyclase (GGDEF) domain protein [Klebsiella pneumoniae 342] Length = 453 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+ L N S F +L K LS++ D+D+FK+INDN+GH GDKVI F + Sbjct: 294 DPLTRLYNRSFFYDTLNQQLAKVNPQHPLSVIISDLDHFKRINDNYGHVAGDKVIQFAAS 353 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L R+GGEEFA + ++E++A +A +R + Q + +TI Sbjct: 354 VLENHSRVDDAAARIGGEEFALLLVNTAEKDALAIAERIRLAVNAEQHPLPE----RMTI 409 Query: 221 SAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S G+ R T + RAD A+Y AK SGRNRVV + Sbjct: 410 SMGLYTTRDRSVSAETCVERADAAMYEAKNSGRNRVVVW 448 >gi|119468870|ref|ZP_01611895.1| hypothetical protein ATW7_03882 [Alteromonadales bacterium TW-7] gi|119447522|gb|EAW28789.1| hypothetical protein ATW7_03882 [Alteromonadales bacterium TW-7] Length = 302 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 5/159 (3%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +NR++Q +D L+ + N F + +E +++ DID+FK IND FGH GDKV+ Sbjct: 141 HNRLAQEFIVDDLTQVYNRRCFYEYVENETDESYAVIIIDIDHFKSINDTFGHDKGDKVL 200 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + ++ +F R+GGEEFA + ++ A + S I Sbjct: 201 KAFASKIDALFEDGNIFARIGGEEFAGYLPNCTLEQMQAFAES----VLASARTIEVTDE 256 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 ++ + S G+A+R E +++ RADQALY AK SGRN+ Sbjct: 257 LYTSASIGVAKRFKNESFDSVMKRADQALYKAKNSGRNQ 295 >gi|107102419|ref|ZP_01366337.1| hypothetical protein PaerPA_01003481 [Pseudomonas aeruginosa PACS2] gi|218890931|ref|YP_002439797.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|218771156|emb|CAW26921.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 525 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 103 LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N +F+ + + + DID+FK IND+ GH GD+ + Sbjct: 360 LASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKNINDSHGHLTGDRAL 419 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++ L +GRLGGEEFAA S +A +A LR +E ++N G Sbjct: 420 QRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRAGVEALRVNNPDGEP 479 Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+A R + + +++ RAD ALY AK GRNR Sbjct: 480 LRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNRT 520 >gi|238893927|ref|YP_002918661.1| hypothetical protein KP1_1864 [Klebsiella pneumoniae NTUH-K2044] gi|238546243|dbj|BAH62594.1| hypothetical protein KP1_1864 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 379 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R+ ++ D L+G N +A+++++ L+++ D+DYFK+ ND +GH GD+ Sbjct: 215 QRLESIANQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDEC 274 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISS 212 ++ ++ L + V V R GGEEF G S A +A ++ KI E + +S Sbjct: 275 LSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAAS 334 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S GI PI T+I RAD ALY AK +GRN+ Sbjct: 335 AVASEVTVSIGIVASDGTVPIETLIARADSALYQAKNNGRNQ 376 >gi|85711449|ref|ZP_01042507.1| GGDEF domain protein [Idiomarina baltica OS145] gi|85694601|gb|EAQ32541.1| GGDEF domain protein [Idiomarina baltica OS145] Length = 364 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 11/212 (5%) Query: 51 FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLS 110 +Y + P + V +L ++ I + GY++ L ++ ++++++ + D L+ Sbjct: 137 YYPAMQPINATAVVGVHIFNLTVVFI----MFGYLALYYLNKVNLTHDQLRFYATTDPLT 192 Query: 111 GLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 L N + + + +S++ D+D+FK +ND GH VGDKV+ +D L Sbjct: 193 KLRNRRHMSELLKRALQNKHAEQRNVSVLLLDLDHFKSVNDTHGHEVGDKVLRITADILR 252 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V R GGEEF ++ AA +A +RK I + +I +T S G Sbjct: 253 DTVRDHDKVSRWGGEEFLVFLPRTNLNHAAQVAERIRKAIAKYPWHTVINENIQLTTSIG 312 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++E + ++T++ RAD ALY K++GRN V Sbjct: 313 VSELKPDDSVNTLVKRADDALYRGKEAGRNWV 344 >gi|120553039|ref|YP_957390.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei VT8] gi|120322888|gb|ABM17203.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei VT8] Length = 407 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 8/164 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N + L+ D L+G+LN + YN L++++ D D+FK+IND +GH Sbjct: 228 NELEALATRDSLTGVLNRRECSRVLIEELERARRYNRPLALLWIDFDHFKEINDTWGHAA 287 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + +GR GGEEF EA A LR+ + N + + Sbjct: 288 GDSVLCSISSLLEDSVRSVDTLGRFGGEEFVLILPEMDVAEAEETAERLRQRVCNQPVAL 347 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 SG +I +TIS G+A H + + + AD+A+Y AKK GRN Sbjct: 348 ESGHNIRLTISIGVAVFPDHGDTLDALCAAADKAMYRAKKQGRN 391 >gi|330942545|gb|EGH45127.1| hypothetical protein PSYPI_23427 [Pseudomonas syringae pv. pisi str. 1704B] Length = 389 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ L + E+ L + D+D+FK+IND +GH GDKV Sbjct: 227 QKALIDPLTGLPNRAAWGERLEQEMARWQEEKNSLLVCILDLDHFKRINDGYGHLAGDKV 286 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ L F+ R GGEEF +S L ++LR +E+ + G Sbjct: 287 LKIVANVLSKRLRADDFMARFGGEEFVMLLPATSLAAGLTLLDELRAAVESCPFHF-KGE 345 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNR+ Sbjct: 346 RVTITVSIGLTAFRPSEKSDTAIKRADQALYKAKENGRNRI 386 >gi|325981986|ref|YP_004294388.1| response regulator receiver modulated diguanylate cyclase [Nitrosomonas sp. AL212] gi|325531505|gb|ADZ26226.1| response regulator receiver modulated diguanylate cyclase [Nitrosomonas sp. AL212] Length = 554 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNH+A L LS DID+FK+IND +GH GD+VI L+ Sbjct: 394 DGLTGLLNHTAIKEELAREVIRSSRLKTSLSFAMVDIDFFKKINDTYGHAAGDRVIKSLA 453 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L VGR GGEEFA + AA + +++R + + +++S + Sbjct: 454 RLLKQRLRETDIVGRYGGEEFAIIMNDTDATSAAKVIDEIRNVF-SRLLHLSHDEEFSVN 512 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S GIA+ H +++ AD ALY AK+ GRN+V+ Sbjct: 513 FSCGIADLAHFPDAASLSEAADAALYQAKQRGRNKVIV 550 >gi|260557891|ref|ZP_05830104.1| GGDEF family protein [Acinetobacter baumannii ATCC 19606] gi|260408682|gb|EEX01987.1| GGDEF family protein [Acinetobacter baumannii ATCC 19606] Length = 397 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 130/279 (46%), Gaps = 30/279 (10%) Query: 13 LCHEKNL-ESFSPHTFMIYF------------SIFFSIFI-ATVIFIANIFLFYIGLTP- 57 LCH+ L S SP T + Y I +S FI AT+I +L G P Sbjct: 117 LCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAVCTYLSMSGTVPY 176 Query: 58 -----FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRID 107 F +E+ L + I +L ++ IL E+ ++ R I +LS+ID Sbjct: 177 APLFNFKAMEHAQTNPFWLGSMLFFIMPIL--VACFILFEILLTQWRQRETYIQRLSQID 234 Query: 108 CLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 L+ +LN + + L + +E+ +++ DID+FK+IND +GH GD+V+ ++ L Sbjct: 235 PLTNVLNRRSLNTHLEALHEQRFDYAVILLDIDHFKKINDIYGHHQGDQVLIEIARCLSE 294 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 +GR GGEEF + +A +A R+ ++ I + IH++ S GI Sbjct: 295 NLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQIHVSASFGI 354 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + +I +ADQALY K SGRN+V F + Sbjct: 355 SSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQLPQ 393 >gi|225850521|ref|YP_002730755.1| diguanylate cyclase [Persephonella marina EX-H1] gi|225646526|gb|ACO04712.1| diguanylate cyclase [Persephonella marina EX-H1] Length = 415 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 8/160 (5%) Query: 106 IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+GLLN A L S + LSIV D+D FK IND +GH VGD V+ Sbjct: 256 IDHLTGLLNRKAMDFILNSQYQIAKLTGKPLSIVMLDLDDFKNINDRYGHLVGDCVLQNF 315 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + +L F+ R GGEEF + +++A I+ +L + I +S I I++ Sbjct: 316 AKELQEHLRKSDFIFRYGGEEFLILMPFTEKRDACIVIRNLLEKISDSYICCGEDLYINV 375 Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 T SAGI + K E + II +ADQ +Y AK SG+++V+C Sbjct: 376 TFSAGIEDITSKHESVIDIIKQADQKMYKAKSSGKSKVIC 415 >gi|156740992|ref|YP_001431121.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM 13941] gi|156232320|gb|ABU57103.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM 13941] Length = 792 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 12/169 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + +L+ D L+GL N F + Y+ L+++ D+DYFK IND FGH Sbjct: 622 FTETQRLATTDHLTGLFNRHHFFALAPRELERARRYHHPLALLVIDVDYFKTINDTFGHS 681 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ Q+ + R GGEEF A ++ A +A LR + + + Sbjct: 682 AGDVVLRSVAKQMQRELRDADILARFGGEEFIALLPETNRAGALRVAERLRAAV--AGVP 739 Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + P + +TIS G A + + T+I+RAD+ALY+AK GRN+V Sbjct: 740 LLREPPVQVTISIGCAVLDSVSEHDRLDTLIHRADRALYIAKSRGRNQV 788 >gi|302875629|ref|YP_003844262.1| diguanylate cyclase with TPR repeats [Clostridium cellulovorans 743B] gi|302578486|gb|ADL52498.1| diguanylate cyclase with TPR repeats [Clostridium cellulovorans 743B] Length = 1778 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 11/168 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 I ++++ ++ ID L+ A S + + +E+ S++ FD+D FK IND FG Sbjct: 1433 IEKHQLAMIASIDKLTKAYTRKALESYMIQQLEHSKNNDEEFSLIIFDVDKFKDINDTFG 1492 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V++ + ++ GR GGEEF +S EA +A LR +E ++ Sbjct: 1493 HQTGDLVLSSICKVILSSIRKHDICGRYGGEEFIVLLPNTSTNEALEIAERLRIKVEEAK 1552 Query: 208 INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254 I G +TIS GI+ H IS ++ RADQALY+AK++GRN+ Sbjct: 1553 I---LGDRRDVTISLGISSYPIHGSDISKLVKRADQALYMAKETGRNK 1597 >gi|307726106|ref|YP_003909319.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003] gi|307586631|gb|ADN60028.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003] Length = 777 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 91/169 (53%), Gaps = 14/169 (8%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFG 147 F+ +R++QL+ D L+GL N AF++ + ++S +F DID FK +ND FG Sbjct: 189 FLLEDRLAQLAATDPLTGLQNRRAFVTQAERRLADVAQGGQVSAIFLDIDNFKSLNDRFG 248 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENS 206 H VGD + ++ L+ V R+GGEEF A L S+ A+ LA LR I Sbjct: 249 HAVGDLALRQVAQVLLDGTSRTDSVSRIGGEEF--AVLSSNGLRGALELAEQLRGAIAAL 306 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + P ++T S G+AE E I ++ RAD+AL AK SGRNRV Sbjct: 307 ER-----PDGNLTASFGVAEHRTGENIMVLLDRADEALLRAKHSGRNRV 350 >gi|261856745|ref|YP_003264028.1| diguanylate cyclase [Halothiobacillus neapolitanus c2] gi|261837214|gb|ACX96981.1| diguanylate cyclase [Halothiobacillus neapolitanus c2] Length = 460 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N AF + + EK L + +D+DYFK++ND FGH GDK + + Sbjct: 299 DTLTGLPNRLAFDERVALEAARMQREKTPLCLALWDVDYFKRVNDTFGHQAGDKALHVVG 358 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + V R GGEEF + Q+A ++ +R+ + + P + IT Sbjct: 359 KTLSQLIRDVDMVARYGGEEFVMVLPKADLQQAFVVLERIREKLAGTAFRFKDTP-LKIT 417 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+AE E I +++ RAD+ALY AK +GRNR Sbjct: 418 LSCGVAEFGAGETIESVMARADEALYRAKSNGRNRT 453 >gi|154246349|ref|YP_001417307.1| diguanylate cyclase [Xanthobacter autotrophicus Py2] gi|154160434|gb|ABS67650.1| diguanylate cyclase [Xanthobacter autotrophicus Py2] Length = 427 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 10/169 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 + + + + RID L+GL N F I+ S+ + S+V+FDID FK IND FGH Sbjct: 247 AMDELERQGRIDPLTGLANRRGFDDLAQELIADKTSHPQ--SLVYFDIDRFKGINDGFGH 304 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+A + + V R GGEEF +S + A A +R + + Sbjct: 305 ATGDLVLATVGGLVARVVMPRDVAARRGGEEFVVLLASTSARSAFHFAERMRAELRRTSF 364 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + P +T S G+AER E ++ +++RADQ +Y AK +GR+ V+ Sbjct: 365 PMLP-PGAVVTASFGVAERRPDEDLADLLHRADQLVYAAKHAGRDLVLT 412 >gi|311104033|ref|YP_003976886.1| diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310758722|gb|ADP14171.1| diguanylate cyclase, GGDEF domain protein 2 [Achromobacter xylosoxidans A8] Length = 578 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 13/172 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++ L+ D L+GLLN AF +SL + L+++ FDID+FK+IND++GH GD Sbjct: 407 LAALAETDFLTGLLNRRAFHARAEALCASLDEPGQMLTLIVFDIDHFKRINDSYGHAGGD 466 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ + V R+GGEEFA S +A+ +A +R+ +E + + Sbjct: 467 NVLVAVAQACHQTWRRSDIVARIGGEEFAVLCTVRSTAQASAMAQSMRRRVERLSVPLDG 526 Query: 213 GPSIHITISAGI----AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 IT S G+ A+ H I ++ +AD+ LY AK SGRN V+ S+ Sbjct: 527 KTIESITSSFGVVCAPADEIHD--IDALLKQADELLYRAKASGRNCVITQSE 576 >gi|260774548|ref|ZP_05883461.1| response regulator receiver modulated diguanylate cyclase [Vibrio metschnikovii CIP 69.14] gi|260610454|gb|EEX35660.1| response regulator receiver modulated diguanylate cyclase [Vibrio metschnikovii CIP 69.14] Length = 556 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/171 (38%), Positives = 90/171 (52%), Gaps = 17/171 (9%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQINDNFGHPVG 151 Q D L+ LL H++ +L +N+ L +V DID+FK++ND +GH VG Sbjct: 383 EQAQTQDGLTQLLKHASIKEAL--HNQWLISQRQAQGYCVVMLDIDHFKRVNDTYGHSVG 440 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D VIA L F +GR GGEEF L Q+A + N LR+ + S I S Sbjct: 441 DVVIATTGTLLKQRFRRTDKLGRYGGEEFMLILLHCDLQQAEKMVNGLRQ--DFSAIQFS 498 Query: 212 SG-PSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G TISAGI +++ + T++ RADQALY+AK GRNR VC + Sbjct: 499 GGQQQFSCTISAGIVDSQQFPNDDAETLLNRADQALYLAKNRGRNR-VCLA 548 >gi|158424035|ref|YP_001525327.1| REC protein [Azorhizobium caulinodans ORS 571] gi|158330924|dbj|BAF88409.1| REC protein [Azorhizobium caulinodans ORS 571] Length = 389 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + + ++ + +L+ D ++ LLN F + K S++ D+D + IN+ G Sbjct: 197 ERMNLAQRELVRLATRDAMTDLLNRRTFFARAEDMIHNRTKASVILLDVDLLRHINETHG 256 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 +P GD V+ ++ + G R+GGEEFA G SE EA LR I + Sbjct: 257 YPGGDTVVMKVAQSMKRYQG---MAARIGGEEFAVLLPGLSEAEAVEEGERLRWSIADQA 313 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + + +G I +T S G+AER + + + AD ALY AK GRNRVV +I Sbjct: 314 VTMPNGQLITVTASLGVAERKPDDNVDEWMESADIALYAAKAGGRNRVVMSEEI 367 >gi|59711596|ref|YP_204372.1| diguanylate cyclase (GGDEF), inhibitor of flagellar motility [Vibrio fischeri ES114] gi|59479697|gb|AAW85484.1| diguanylate cyclase (GGDEF), inhibitor of flagellar motility [Vibrio fischeri ES114] Length = 631 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 17/174 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV---------FFDIDYFKQINDNFGH 148 N + +LS D L+ N F + K + DIDYFK+IND +GH Sbjct: 461 NCLRELSEKDMLTQCWNRRKFEAEFSKLTNKQRLTPEVKMSCLAIIDIDYFKRINDQYGH 520 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGDKVI ++ L + FV R+GGEEFA +S +EA ++ N LR I Sbjct: 521 DVGDKVIKNVARILQTESRSIDFVARIGGEEFAILLPNTSLKEAEVILNRLR-----VAI 575 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +++ G S +T+S G+ + C + RAD ALY +K +GRN++ CF E Sbjct: 576 HLADG-SQSVTVSGGVTDIC--DCGEATYKRADLALYESKTAGRNQISCFPSSE 626 >gi|329904066|ref|ZP_08273661.1| hypothetical protein, Putative conserved domain [Oxalobacteraceae bacterium IMCC9480] gi|327548150|gb|EGF32864.1| hypothetical protein, Putative conserved domain [Oxalobacteraceae bacterium IMCC9480] Length = 364 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 98/185 (52%), Gaps = 18/185 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFK 140 +I E I+ R+ ++ D L+G+ N +G + LS ++ DID+FK Sbjct: 179 AICLENVINNERLKRIGLTDSLTGVNNRRYLERRLQEEIGRTRRQEFPLSCMYIDIDHFK 238 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND+ GH GD+V+ ++ ++ +GR GGEEF + + A ++A +R Sbjct: 239 KINDSAGHQGGDEVLQQVALRIKAELRLSDALGRFGGEEFVVLLIDAGLSHALVVAERIR 298 Query: 201 KIIENSQINISSGPSIHITISAGI-----AERCHKEPIST----IIYRADQALYVAKKSG 251 I N I +S G ++ T+S G+ A+R H P+ ++ RAD+ALY AK+SG Sbjct: 299 ASIANQPIVLSDGAALTATVSIGVTELSAADRVH--PVEKTALQLVARADEALYRAKQSG 356 Query: 252 RNRVV 256 RNRV+ Sbjct: 357 RNRVI 361 >gi|254788445|ref|YP_003075874.1| ggdef domain-containing protein [Teredinibacter turnerae T7901] gi|237684051|gb|ACR11315.1| ggdef domain protein [Teredinibacter turnerae T7901] Length = 580 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 8/161 (4%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N A+ + Y+ L I DID+FK+INDNFGH GD+V+ ++ Sbjct: 417 DSLTGLPNREAYNERVYQEYRRFTRYSRPLGIAVCDIDHFKKINDNFGHQTGDRVLKLIA 476 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + FV R GGEEF +S ++ + + +R + + P + IT Sbjct: 477 RLISTRLRKVDFVARYGGEEFVILLPETSASQSRSVLDKIRAAVAKAAFRFGDDP-VKIT 535 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S GI+ + I T RAD+ALY AK GRNR V +D Sbjct: 536 LSFGISAFRSDDTIETAFQRADKALYQAKADGRNRCVVDTD 576 >gi|89093730|ref|ZP_01166677.1| hypothetical protein MED92_11509 [Oceanospirillum sp. MED92] gi|89082126|gb|EAR61351.1| hypothetical protein MED92_11509 [Oceanospirillum sp. MED92] Length = 811 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 11/178 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 S+L E + + +L+ D L+ L N F+++L + Y+ +LS+ D+D+FK Sbjct: 625 SLLIEEQQTEANLHRLATTDELTSLANRRKFLTTLEAELARAKRYHRELSLCMLDLDHFK 684 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND+ GH GD V+ ++ + + GR+GGEEFA +SE +A ILA LR Sbjct: 685 RINDDNGHSAGDSVLVEVAKIMEAMLRESDMAGRIGGEEFAILLPDTSEDDALILAERLR 744 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255 + IE+ +I + ++ +T S G+A I S ++ AD +Y AK++GRN V Sbjct: 745 EAIESLEIKYQAH-TLKLTTSIGVASLNQMPEIVQASELLSAADDCMYYAKQNGRNLV 801 >gi|315123539|ref|YP_004065545.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Pseudoalteromonas sp. SM9913] gi|315017299|gb|ADT70636.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Pseudoalteromonas sp. SM9913] Length = 368 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 7/167 (4%) Query: 101 SQLSRIDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDK 153 Q + D L+G N S F+ S E LSI+ D+D FKQ+ND++GH GD Sbjct: 197 KQHAHTDQLTGAPNRRFITSHFLKLAASRPEHYLPLSILLIDLDKFKQLNDSYGHDFGDT 256 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + L F R GGEEF + EA+ILAN R+ ++N + Sbjct: 257 VLIEFTKLLESQFPATALKARYGGEEFVVILPQQTTLEASILANRFRECVQNHVMLTDKH 316 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +T S GIA+ + + + +ADQ LY AK GRN+VV D Sbjct: 317 QRVSLTCSMGIAQANSVDDYNNALKQADQYLYSAKAQGRNKVVSVHD 363 >gi|237803673|ref|ZP_04591258.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025655|gb|EGI05711.1| CHASE domain-containing protein/sensory box histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 796 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 18/184 (9%) Query: 87 GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 GS+L F+S R+ Q LS D L+G N F + + + LSI Sbjct: 611 GSVLWHGFVSDITDLKRVEQELRELSVTDVLTGAYNRRYFQDRMQAELKRVDRHGGHLSI 670 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ + Sbjct: 671 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISHRLRSDDVFCRLGGEEFMVVCPGTRGAQ 730 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A LA LR+ + N I G +T S GIA E I ++ RAD +Y AK++G Sbjct: 731 AYQLALSLREELRNQVIE---GVDHVVTASFGIASLRAGEGIDAMLLRADSGVYAAKQAG 787 Query: 252 RNRV 255 R+RV Sbjct: 788 RDRV 791 >gi|78777767|ref|YP_394082.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78498307|gb|ABB44847.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM 1251] Length = 516 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 8/164 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R + S+ D L+ L N A + Y + ++VFFD+D+FK +ND +GH G Sbjct: 351 RAREESKEDFLTKLFNKRALEEFMNIKEAEFERYEKNFTVVFFDLDHFKAVNDTYGHDAG 410 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ S L VGR GGEEF A + + A +R ++N++ Sbjct: 411 DAVLVAFSKILKKDARNVDIVGRYGGEEFVAILSETDTDGGIVFAQKIRNKVKNARFMYK 470 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S I +++SAG++ER + + + AD+ALY AK +GR+RV Sbjct: 471 SN-RIELSVSAGVSERKIHASLQSTMKAADEALYKAKDNGRDRV 513 >gi|238023901|ref|YP_002908133.1| diguanylate cyclase [Burkholderia glumae BGR1] gi|237878566|gb|ACR30898.1| Diguanylate cyclase [Burkholderia glumae BGR1] Length = 505 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 93/179 (51%), Gaps = 14/179 (7%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141 +L++ ++++LSR D L+GLLN A + L ++ +S++F D D+FKQ Sbjct: 317 VLRDNLNKQRKLTELSRTDALTGLLNRRALDAVLADEWQRVQRGNTCMSVLFIDADHFKQ 376 Query: 142 INDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 ND GH GD + FL+ + V G R GGEEF A + + A ++ Sbjct: 377 YNDIHGHAKGDTALRFLAACISRHVRRHGD--IAARYGGEEFVAVLVNTDTHGALTVSEA 434 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 +R+ IE +++ P +T+S G A +P S + +AD ALY AK+SGRNRV Sbjct: 435 IREDIERNRLADFPEPIPALTVSIGCATGRRGKPASVEALCRQADLALYQAKRSGRNRV 493 >gi|307690161|ref|ZP_07632607.1| diguanylate cyclase with TPR repeats [Clostridium cellulovorans 743B] Length = 1173 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 11/168 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 I ++++ ++ ID L+ A S + + +E+ S++ FD+D FK IND FG Sbjct: 828 IEKHQLAMIASIDKLTKAYTRKALESYMIQQLEHSKNNDEEFSLIIFDVDKFKDINDTFG 887 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V++ + ++ GR GGEEF +S EA +A LR +E ++ Sbjct: 888 HQTGDLVLSSICKVILSSIRKHDICGRYGGEEFIVLLPNTSTNEALEIAERLRIKVEEAK 947 Query: 208 INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254 I G +TIS GI+ H IS ++ RADQALY+AK++GRN+ Sbjct: 948 I---LGDRRDVTISLGISSYPIHGSDISKLVKRADQALYMAKETGRNK 992 >gi|326317166|ref|YP_004234838.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374002|gb|ADX46271.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 250 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 98/198 (49%), Gaps = 8/198 (4%) Query: 62 EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121 E +L E LV S L + ++ + + + R + D L+G+LN +A I Sbjct: 49 ERLLRETRRLVRRSDRAELEMNQLNQQLTELAEQLHYRATH----DPLTGVLNRAAIIEQ 104 Query: 122 LGSYNEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 + E S+ + DID+FK++ND+FGHPVGD+VI + D L V +GR+GGEE Sbjct: 105 VNGQFEAGSVALIVLDIDHFKKVNDSFGHPVGDRVIRGVVDCLKSVVPGSAQIGRVGGEE 164 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F + Q +A R+ IE + G +T S G++ Sbjct: 165 FTVLLPDAHGQACERVAEAAREAIEGFDFGLPDG--SRVTASFGVSWLPGGCVFDDAYGL 222 Query: 240 ADQALYVAKKSGRNRVVC 257 AD+ALY AK++GRNRVVC Sbjct: 223 ADEALYDAKRAGRNRVVC 240 >gi|238762889|ref|ZP_04623857.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638] gi|238698900|gb|EEP91649.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638] Length = 332 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 14/185 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132 LLG ++ K L + + ++S D L+GL N H+ F S Y +++ Sbjct: 148 LLGLVTYRTAKRLAENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 206 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191 DID FK IND FGH VGD+ I L+++L++ VGR GG+EF A ++ EQ Sbjct: 207 LLDIDNFKSINDTFGHAVGDEAITILAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 266 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250 IL K+ + + P++ + +SAGIA+ H + AD ALY+AK + Sbjct: 267 REILLRIQEKL---ADLVFIQAPTLQLRVSAGIADYRHDMVNYQQWLKAADSALYLAKDN 323 Query: 251 GRNRV 255 GRNR+ Sbjct: 324 GRNRI 328 >gi|283853435|ref|ZP_06370679.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] gi|283571155|gb|EFC19171.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] Length = 530 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 13/168 (7%) Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS +D L+GL N + + + + + D+D+FK IND+ GH GD+V Sbjct: 360 RLSVLDALTGLYNRRFLFSGGAKLLDASARAGRPCTCLMLDLDHFKAINDSHGHRTGDQV 419 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +A ++ ++ V R GGEEFA GS Q A LA +R+ + ++ + Sbjct: 420 LAHVAGRIAGAVRRSDLVARYGGEEFAVLLTGSDRQHGAELAERIRQALADAPCQVGDA- 478 Query: 215 SIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVC 257 + +T+S G+AE + + ++ RAD+ALY AK +GR+RV Sbjct: 479 YLPVTVSIGVAETRERVQFGESALDDLLARADKALYAAKAAGRDRVAA 526 >gi|221639846|ref|YP_002526108.1| response regulator receiver modulated diguanylate cyclase [Rhodobacter sphaeroides KD131] gi|221160627|gb|ACM01607.1| Response regulator receiver modulated diguanylate cyclase [Rhodobacter sphaeroides KD131] Length = 461 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 13/167 (7%) Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ +D L+GL N +A + +E+ +++ D+D FK +ND +GH GD V Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERARASDERFAVMVIDLDRFKSVNDRWGHGAGDAV 346 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSG 213 + ++ +L + R+GGEEF A E A +A LR+ +E + + G Sbjct: 347 LVAVARRLHANLRPGDLIARIGGEEFLVALPDVPRPEDAHAVAERLREAVEEEPVPLPGG 406 Query: 214 PSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S+ +TIS G+A EP+ ++ RAD AL +AK +GRN+V Sbjct: 407 GSLRVTISVGLALSPDGAGRRAEPVDAVVQRADSALLLAKSAGRNQV 453 >gi|229065065|ref|ZP_04200360.1| GGDEF domain protein [Bacillus cereus AH603] gi|228716207|gb|EEL67923.1| GGDEF domain protein [Bacillus cereus AH603] Length = 343 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 12/203 (5%) Query: 63 YILVENLSLVIISITISLLLGY---ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118 YIL +++ +V + + ++ Y +S S + + + + + ID L+ L N F Sbjct: 139 YILFKDIYVVALYLVCCIVAAYFTFVSASYVLQSNELFQTMKHYATIDALTNLGNVRQFD 198 Query: 119 ------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 I S N+ L ++ DID+FK +ND +GHP GD+V+ L L+ P V Sbjct: 199 FEMNRHIGSKHMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQLGRILLENAPFPNLV 258 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232 R GGEEFA + +R +E + +G I IT+S G++E +K+ Sbjct: 259 FRKGGEEFALLLPKKRVAFGTRIGEQIRLAVEKHSFQLQNGEKIKITVSVGLSE--YKKS 316 Query: 233 ISTIIYRADQALYVAKKSGRNRV 255 I AD ALY +K++GRN+V Sbjct: 317 PEQFIQSADDALYYSKRNGRNKV 339 >gi|91779794|ref|YP_555002.1| diguanylate cyclase [Burkholderia xenovorans LB400] gi|91692454|gb|ABE35652.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 432 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/156 (38%), Positives = 89/156 (57%), Gaps = 9/156 (5%) Query: 107 DCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD-Q 161 D L+GL N F+ LG+ ++ LS+ DID+FK+IND++GH +GD+V+ L+ Sbjct: 276 DALTGLPNRREFLEFVDKVLGT-DDVLSVFILDIDFFKKINDSYGHDIGDEVLRVLAKVG 334 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITI 220 + + G+ +F R GGEEF AA G+ A A ++R+ IE + I T+ Sbjct: 335 MSITHGSNLFA-RWGGEEFVAALPGADVGLAHRFAEEVRERIEQQDFEHAWHLKPIPFTV 393 Query: 221 SAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 S G+ R E + ++ RAD+ALY AKK GRNRV Sbjct: 394 SIGVVTRAEGERDVDALMKRADRALYRAKKLGRNRV 429 >gi|330502214|ref|YP_004379083.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328916500|gb|AEB57331.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 367 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 13/168 (7%) Query: 101 SQLSR------IDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 SQL R +D L+ + N AF +L + L++V DID+FKQ ND +GHP+ Sbjct: 189 SQLERAHLAATLDSLTRVFNRHAFTRLLERALKDSQQGLALVILDIDHFKQFNDQYGHPL 248 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQIN 209 GD+V+ + L + F R GGEEF S EA A LR I++ ++ Sbjct: 249 GDRVLQHVGQLLRDLLPPEAFAARYGGEEFCVVLRNCSNLDEALDFAEQLRNKIQSLRVK 308 Query: 210 ISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + IT S G A + +++ RAD ALY AK++GRN+V Sbjct: 309 VRRTDQVLDSITASFGCAMAEEDDTFESLLTRADDALYQAKRAGRNQV 356 >gi|242278837|ref|YP_002990966.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242121731|gb|ACS79427.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 449 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 51/131 (38%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS++ DIDYFK IND FGH VGD+ ++ S V + GR GGEEF A + Sbjct: 316 LSVLVLDIDYFKTINDQFGHEVGDRALSSFSKLCSGVLRSSDVFGRFGGEEFLAVLHDTE 375 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 EA +A +R+ +E +N P +T+S G+A + II RAD+AL+ AK Sbjct: 376 IDEAVEVAERMRRTVEKGSVNSDGLP--QLTVSIGVAVDFPGDDFEMIIRRADEALFKAK 433 Query: 249 KSGRNRVVCFS 259 GRN V + Sbjct: 434 SKGRNLVEVYD 444 >gi|254413714|ref|ZP_05027483.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179311|gb|EDX74306.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 330 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 9/190 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132 +L G+ S ++L + + +S L+ D L+ L N A I + +Y LS++ Sbjct: 138 ILAGWRSVQFYQKLLQTNDVLSTLALADPLTELNNRRAMEWELPRQIQNARTYITDLSVI 197 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK +ND +GH VGD+V+ LS +L + R GGEEF +S +EA Sbjct: 198 MMDVDHFKSVNDTYGHQVGDRVLQLLSTRLQHNLRLQDTLFRYGGEEFLVVLNQTSGEEA 257 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKS 250 I+A LR I N+ +I ITIS GIA + +++ RAD L AK Sbjct: 258 KIVAKRLRYQINEQPFNVDGTIAIEITISVGIASLKASDDHKGESLVKRADHNLLRAKAK 317 Query: 251 GRNRVVCFSD 260 G N+V+ D Sbjct: 318 GTNQVLYSDD 327 >gi|161521548|ref|YP_001584975.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616] gi|189352282|ref|YP_001947909.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616] gi|160345598|gb|ABX18683.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616] gi|189336304|dbj|BAG45373.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616] Length = 510 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 86/170 (50%), Gaps = 9/170 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147 ++ ++ +L+R D L+GL N AF ++L + LS++F D+D+FK ND +G Sbjct: 331 VAEAKLYRLARTDSLTGLDNRGAFDAALAQEARRAARSGRPLSVLFVDVDHFKAFNDYYG 390 Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 H GD V+ ++ + R GGEEF + Q AA +A +R+ I Sbjct: 391 HLAGDDVLRRVAQCASGCLRRATDHIARYGGEEFVVTLPDTDAQGAATVAEGIRRAIAAL 450 Query: 207 QINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 I P H+T S G A H + +T++ RAD ALY AK GRNRV Sbjct: 451 GIEHVKSPYGHVTASIGTATDPHGRMDAATLLQRADDALYRAKYGGRNRV 500 >gi|16803950|ref|NP_465435.1| hypothetical protein lmo1911 [Listeria monocytogenes EGD-e] gi|47096494|ref|ZP_00234086.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854] gi|224500261|ref|ZP_03668610.1| hypothetical protein LmonF1_11519 [Listeria monocytogenes Finland 1988] gi|224501290|ref|ZP_03669597.1| hypothetical protein LmonFR_01995 [Listeria monocytogenes FSL R2-561] gi|254827204|ref|ZP_05231891.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165] gi|254831488|ref|ZP_05236143.1| hypothetical protein Lmon1_09043 [Listeria monocytogenes 10403S] gi|254899392|ref|ZP_05259316.1| hypothetical protein LmonJ_06249 [Listeria monocytogenes J0161] gi|254912469|ref|ZP_05262481.1| GGDEF domain-containing protein [Listeria monocytogenes J2818] gi|254936796|ref|ZP_05268493.1| GGDEF domain-containing protein [Listeria monocytogenes F6900] gi|284802356|ref|YP_003414221.1| hypothetical protein LM5578_2112 [Listeria monocytogenes 08-5578] gi|284995498|ref|YP_003417266.1| hypothetical protein LM5923_2063 [Listeria monocytogenes 08-5923] gi|16411364|emb|CAC99989.1| lmo1911 [Listeria monocytogenes EGD-e] gi|47015147|gb|EAL06088.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854] gi|258599587|gb|EEW12912.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165] gi|258609391|gb|EEW21999.1| GGDEF domain-containing protein [Listeria monocytogenes F6900] gi|284057918|gb|ADB68859.1| hypothetical protein LM5578_2112 [Listeria monocytogenes 08-5578] gi|284060965|gb|ADB71904.1| hypothetical protein LM5923_2063 [Listeria monocytogenes 08-5923] gi|293590451|gb|EFF98785.1| GGDEF domain-containing protein [Listeria monocytogenes J2818] Length = 378 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 11/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N F ++ ++N LS++ DIDYFK++ND +GH VG+ Sbjct: 205 LQQSTILDPLTGLTNFRHFENAFDAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 264 Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 265 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 324 Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA + S ++ ADQALY AK++GRN+V Sbjct: 325 ASGSV-ITISAGIANYDGRNYPSANELLNAADQALYNAKRNGRNQV 369 >gi|213855261|ref|ZP_03383501.1| hypothetical protein SentesT_14822 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 274 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 20/206 (9%) Query: 74 ISITISLLLGYISGSIL----------KELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 ISI ++LL G + +L K +F+ N + D L+ L N A Sbjct: 62 ISIALTLLWGLFTAMLLISWGVIRHMVKNMFVLQNSPQWQAWHDPLTRLYNRGALFEKAS 121 Query: 124 SYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 ++ S++ D+DYFK +ND FGH GD+V++ + + GR+G Sbjct: 122 RLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVG 181 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234 GEEF G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE Sbjct: 182 GEEFCIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFE 241 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260 + AD+ LY AK+SGRNR +C SD Sbjct: 242 QLQSLADKRLYYAKQSGRNR-ICASD 266 >gi|157377236|ref|YP_001475836.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157319610|gb|ABV38708.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 610 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 13/181 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEK----LSIVFFDIDYFKQI 142 L+EL + ++++ + +D L+G+ N +AF L G + + ++I+ DID FK I Sbjct: 429 LRELNEANQKLTEQATVDSLTGVKNRAAFDKRLLAEGRLSRRQQTPMAILMLDIDRFKSI 488 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD+ + ++ L P V R GGEEFA ++E+ A ++A +RK Sbjct: 489 NDTYGHLAGDQTLRLIAQTLKENLKRPADLVSRFGGEEFAIILPNTAEEGAVLVAELIRK 548 Query: 202 IIENSQINISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I+ + +I +TIS G++ +P + ++ +AD+ALY AK +GRN V+ + Sbjct: 549 TVAELPIHWENK-TIPLTISIGVSAEIINTENQP-NNLLEQADKALYRAKNNGRNCVMVY 606 Query: 259 S 259 + Sbjct: 607 T 607 >gi|83309858|ref|YP_420122.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1] gi|82944699|dbj|BAE49563.1| GGDEF domain [Magnetospirillum magneticum AMB-1] Length = 352 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 12/180 (6%) Query: 98 NRISQLSR---IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147 N + L R D L+ L N F SL + + LS++ DID+FKQ ND +G Sbjct: 168 NHLDDLKREASTDALTQLANRKLFDHSLNLAVLDARAADAPLSLLMIDIDHFKQFNDTYG 227 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD+V+ ++ L V R GGEEFA + +++ +A +R + + Sbjct: 228 HQLGDQVLKLVARSLSEVAQAKDTAARYGGEEFAVILPATPLEKSMEVAETIRNQVSTKR 287 Query: 208 I-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + N +G + +T+S G A E ++++RAD+A+Y+AK+ GRNRV D+E T Sbjct: 288 LTNRRTGQVLGQVTLSIGAALLREAEAPDSLVHRADEAMYLAKRDGRNRVKSEIDLEKPT 347 >gi|326387643|ref|ZP_08209249.1| hypothetical protein Y88_0556 [Novosphingobium nitrogenifigens DSM 19370] gi|326207689|gb|EGD58500.1| hypothetical protein Y88_0556 [Novosphingobium nitrogenifigens DSM 19370] Length = 468 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 9/163 (5%) Query: 100 ISQLSR---IDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 I +L R D L+GL N F +L + E+ + DID+FKQ+ND +GH VGD Sbjct: 306 IDELRRAAFTDPLTGLANRRLFFETLRERATGTERACLAMVDIDHFKQVNDRYGHAVGDA 365 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ +D + F+ R+GGEEFA ++ ++A + L + S ++ ++G Sbjct: 366 VLCHFADLARSTLRSRDFIARIGGEEFAIIIQDTTIEQACQVCQRLLDRLAASPVDTAAG 425 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P + IT+S+G+A S + AD+ALY AK+ GR+R+V Sbjct: 426 P-VSITLSSGVAAVGPDCDAS--LAAADEALYQAKRDGRSRLV 465 >gi|291483362|dbj|BAI84437.1| hypothetical protein BSNT_01543 [Bacillus subtilis subsp. natto BEST195] Length = 359 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 12/167 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGS-YNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155 + D L+G+ N F + + Y + + ++++ DID+FK IND +GH GD+V+ Sbjct: 192 AHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQYGHHEGDQVL 251 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L +L R+GGEEFA S +AA +A +R+ + ++ I +++G Sbjct: 252 KELGLRLKQSIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRRTVSDAPIVLTNGEE 311 Query: 216 IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +TIS G A + ++P S I ADQ LY AK++GRNR VCFS+ Sbjct: 312 LSVTISLGAAHYPNNTEQPGSLPIL-ADQMLYKAKETGRNR-VCFSE 356 >gi|260461134|ref|ZP_05809383.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] gi|259033168|gb|EEW34430.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] Length = 253 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 99/167 (59%), Gaps = 5/167 (2%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-GSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+++ + D ++G+LN +F ++L GS +++ +++ D D+FK+IND+FGH GD + Sbjct: 84 RLAEKASRDDMTGMLNRESFFAALDGSRRKSDRGALLIIDADHFKKINDSFGHLTGDDAL 143 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ + +GR+GGEEF A +G++EQEA +A +R+ +E + + Sbjct: 144 LLIASAIERGVRHGDVLGRIGGEEFGAFLVGATEQEAKRVAERIRREVELIRFRPVDERT 203 Query: 216 IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I +T+S G C +E +S ++ AD+ LY AK +GRN + +DI Sbjct: 204 IPLTVSIG-GTVCGEEANVSELMRAADRRLYQAKHAGRNLSILDTDI 249 >gi|157738359|ref|YP_001491043.1| GGDEF/HAMP domain-containing protein [Arcobacter butzleri RM4018] gi|157700213|gb|ABV68373.1| GGDEF/HAMP domain protein [Arcobacter butzleri RM4018] Length = 581 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 137/290 (47%), Gaps = 39/290 (13%) Query: 2 TRSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61 T + ++++ I+ +EK E + TF + + I IA ++F I+L I + P Y L Sbjct: 296 TLNKQEYIVIFADYEKITEPYLSQTFKLLLTF---IIIAFLMFPIMIYLSGIIIKPIYNL 352 Query: 62 --EYILVEN-------------LSLVIISITISLLLGYISG----------SILKELFIS 96 + I ++N L + ++S + + I+ +EL Sbjct: 353 VKQSIKIKNRKYNDVSQIESPILEIALLSASFENMAQSINSYQNSLEDKVKQRTEELLAK 412 Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 + +LS D L+ L N SL YN SI+ DIDYFK++NDNFGH Sbjct: 413 NEELLKLSITDNLTKLYNRVKLDKSLQDEINRSQRYNTNFSIILLDIDYFKKVNDNFGHQ 472 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD+V+ + L +GR GGEEF + ++A +A+ + I+ + Sbjct: 473 IGDEVLIESAQVLSKNIRNVDILGRWGGEEFLVICPETKIEDAIKVASHINAAIKLHK-- 530 Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ P+ +TIS G+A H + + II AD+ALY AK+ GR++V+ F Sbjct: 531 FTTYPNT-VTISLGVATFSKHIKNVDDIILNADKALYQAKEEGRDKVIAF 579 >gi|15965900|ref|NP_386253.1| hypothetical protein SMc01464 [Sinorhizobium meliloti 1021] gi|15075169|emb|CAC46726.1| Diguanylate cyclase [Sinorhizobium meliloti 1021] Length = 426 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 1/137 (0%) Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + E + + D+D+FKQIND +GH GD +A +D + +GR+GGEEF Sbjct: 260 ARQEPAAFLLLDLDFFKQINDQYGHACGDMALAHFADTVSAFLAGRGVLGRIGGEEFGIV 319 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 +E++A LA D+ +++ + S I +T+S GIA E I+ ++ RAD A Sbjct: 320 LPDHTEEQARALAEDICRVVRETPAG-RSHQRIRLTVSIGIAAAIAGETITDVMIRADLA 378 Query: 244 LYVAKKSGRNRVVCFSD 260 LY +K GR+R D Sbjct: 379 LYDSKADGRDRCSVARD 395 >gi|300698180|ref|YP_003748841.1| diguanylate cyclase [Ralstonia solanacearum CFBP2957] gi|299074904|emb|CBJ54473.1| Diguanylate cyclase (GGDEF domain) fused with response regulator pleD (Stalked cell differentiation-controlling protein) [Ralstonia solanacearum CFBP2957] Length = 467 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 8/176 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 L+EL +++++ L+ D L+GL N FI + G + S++ D+D FK I Sbjct: 291 LRELQAAHHKLEHLAATDPLTGLANRREFIGRVEAEIANAGHASAPFSVLALDLDRFKAI 350 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD V+ + + + V R+GGEEF A +A +R Sbjct: 351 NDTYGHQAGDHVLQRFAKKCLEAIRPHDGVARVGGEEFMVLLPKVPLNAAHAIAERIRTA 410 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I S + G ++ +T+S G++E I I+ AD+ LY AK GRNRV+ Sbjct: 411 IAASPFELEPGHAVALTVSIGVSEFGRDGSDIDAILRSADERLYRAKHEGRNRVIA 466 >gi|262041036|ref|ZP_06014255.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041594|gb|EEW42646.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 379 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R+ ++ D L+G N +A+++++ L+++ D+DYFK+ ND +GH GD+ Sbjct: 215 QRLESIANQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDEC 274 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISS 212 ++ ++ L + V V R GGEEF G S A +A ++ KI E + +S Sbjct: 275 LSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAAS 334 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S GI PI T+I RAD ALY AK GRN+ Sbjct: 335 AVASEVTVSIGIVASDGTVPIETLIARADSALYQAKNKGRNQ 376 >gi|224372280|ref|YP_002606652.1| diguanylate cyclase/phosphodiesterase domain 1 [Nautilia profundicola AmH] gi|223588392|gb|ACM92128.1| diguanylate cyclase/phosphodiesterase domain 1 [Nautilia profundicola AmH] Length = 614 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 13/160 (8%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVI 155 + S D L+ + N L N+K+ S++FFDID+FK INDN+GH GD V+ Sbjct: 459 KEKSEFDALTQIYNRGTIEKIL---NKKIKETDGSLIFFDIDHFKNINDNYGHEKGDLVL 515 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 A L+ + + + GR GGEEF + + A +A LRKIIE + + Sbjct: 516 ASLARIIQKNIRSSDYFGRWGGEEFVIILPQAPYEIAYKIAEKLRKIIEQTDFD-----G 570 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ITIS G++E + ++ + D+ALY AK SGRN+V Sbjct: 571 LNITISLGVSEFKKGDNPEVVLKKVDEALYEAKNSGRNQV 610 >gi|119944058|ref|YP_941738.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii 37] gi|119862662|gb|ABM02139.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii 37] Length = 1078 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 62/163 (38%), Positives = 78/163 (47%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+G+ N AF + L S Y LS+V FDIDYFK++NDNFGH GD Sbjct: 917 IKLLATTDSLTGIANRRAFSTHLASELERSNRYGTPLSLVMFDIDYFKKVNDNFGHDAGD 976 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ LS+ + V R GGEEF S A LR+ I + Sbjct: 977 DVLQALSELVKRNIRAVDIVARWGGEEFMLLMPESDISAATAAIEKLRREIS----DFPF 1032 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G +T+S GI E + R D ALY AK+ GRNRV Sbjct: 1033 GQVGSLTVSFGITVFVLNEDSKVFLKRVDDALYQAKEKGRNRV 1075 >gi|329998476|ref|ZP_08303113.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] gi|328538666|gb|EGF64762.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] Length = 379 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R+ ++ D L+G N +A+++++ L+++ D+DYFK+ ND +GH GD+ Sbjct: 215 QRLESIANQDALTGTANRRALNAYLAAIWQQKTPLALMMIDVDYFKRYNDRYGHQAGDEC 274 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISS 212 ++ ++ L + V V R GGEEF G S A +A ++ KI E + +S Sbjct: 275 LSSVAQVLKMAVRAEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREAGLPHAAS 334 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S GI PI T+I RAD ALY AK GRN+ Sbjct: 335 AVASEVTVSIGIVASDGTVPIETLIARADSALYQAKNKGRNQ 376 >gi|326796702|ref|YP_004314522.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326547466|gb|ADZ92686.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 508 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N +A++ ++ N+ L + DID+FK+IND +GH GDKV+ + Sbjct: 349 DSLTNLPNRAAYLETILPLIVNSKKTNKPLCLAVCDIDHFKKINDTWGHLAGDKVLRLVP 408 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 Q++ G + R GGEEF S+ +E + +R +E + N+ P + +T Sbjct: 409 KQILSAVGKEDLLFRYGGEEFVLLIPASTVEECHVKVEAVRASVEKTPFNVEGQP-VSVT 467 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IS G+ + +I RAD+ LY AK+SGRN+VV Sbjct: 468 ISIGMDYLNANDDHESIFARADKHLYEAKESGRNKVVS 505 >gi|296282551|ref|ZP_06860549.1| signal transduction response regulator [Citromicrobium bathyomarinum JL354] Length = 412 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 16/177 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 + L + R+ LS +D L+GL N H+ F +SL + E L++V D+D+FK+ Sbjct: 221 RRLMEANERLRALSDMDELTGLPNRRHLERVFHTVFETSLAADTE-LAVVMIDVDHFKRF 279 Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD+ + ++ L + G V R GGEEF A E A LA+ +R Sbjct: 280 NDTYGHIAGDRTLVQVARLLEKDLSGEGRTVARFGGEEFIAVLENMDEHAALTLADKVRS 339 Query: 202 IIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I ++ +I+ G +T+S G+A R + P + II RAD ALY AK++GRN V Sbjct: 340 AI--AKRSITGGDRRRSVTVSMGVALRNRADRSP-TAIIERADAALYEAKQAGRNLV 393 >gi|296161074|ref|ZP_06843884.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. Ch1-1] gi|295888597|gb|EFG68405.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. Ch1-1] Length = 432 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 7/155 (4%) Query: 107 DCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GL N F+ LG+ ++ LS+ DID+FK+IND++GH +GD+V+ L+ Sbjct: 276 DALTGLPNRREFLEFVDKVLGT-DDVLSVFILDIDFFKKINDSYGHDIGDEVLRVLAKVG 334 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITIS 221 + + R GGEEF AA G+ A +LR+ IE + I T+S Sbjct: 335 MSITHESNLFARWGGEEFVAALPGADADLVRRFAEELRQRIEQQDFEHAWHLKPIPFTVS 394 Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 G+ R E + ++ RAD+ALY AKK GRNRV Sbjct: 395 IGVVTRAEGERDVDALMKRADRALYRAKKLGRNRV 429 >gi|146305203|ref|YP_001185668.1| diguanylate cyclase [Pseudomonas mendocina ymp] gi|145573404|gb|ABP82936.1| diguanylate cyclase [Pseudomonas mendocina ymp] Length = 614 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q S +D L+GL N +A+ ++ Y +L + D+D+FK+IND +GH GD+V Sbjct: 452 QKSLLDPLTGLPNRAAWSERLELEVARRARYGGELLLAVLDVDHFKRINDGYGHLAGDRV 511 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ +L F+ R GGEEF + + L LR IE + P Sbjct: 512 LKIIAGELHKRLRKTDFIARFGGEEFVLLIPATPLEGGMQLLETLRAAIEACPFHFKGEP 571 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+AE E + RADQALY AK +GRNRV Sbjct: 572 -VTITLSTGLAEFRDGESAEAVFERADQALYRAKGNGRNRV 611 >gi|71736520|ref|YP_273494.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557073|gb|AAZ36284.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 459 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 22/188 (11%) Query: 85 ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128 + G+I + IS + ++L R D L+GL N A I + + Sbjct: 267 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 326 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 S++ DID+FK +ND +GHP GD+V+ ++ L R GGEEF SS Sbjct: 327 FSLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSS 386 Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 AA LA+ +RK +E+ I N S +TIS G+A+ E +++I RAD+ALY A Sbjct: 387 LDHAAELADRIRKGVEDLLIPNTGS-----VTISLGVAQLSPGETAASLIQRADKALYQA 441 Query: 248 KKSGRNRV 255 K+ GRNRV Sbjct: 442 KRRGRNRV 449 >gi|39934786|ref|NP_947062.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009] gi|39648636|emb|CAE27157.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris CGA009] Length = 736 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 17/175 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFK 140 +EL I +++ + D L+GL N F + L NE+LS ++ FDID+FK Sbjct: 553 EELLIQTEDLARQAATDSLTGLANRMKFDARL---NEELSRSLRNARPFSLIIFDIDHFK 609 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ++ND +GHPVGD+V+ LS + + R GGEEFA + A A LR Sbjct: 610 EVNDIYGHPVGDQVLVRLSRTVDASIRQADLLARWGGEEFAILLPDTDAAAAYETAKKLR 669 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ ++ IT S G+A+ + T++ RAD ALY AK +GRNRV Sbjct: 670 LLVAHTIFEHVG----TITASFGVAQVLPGDHADTLVARADNALYRAKLNGRNRV 720 >gi|150016643|ref|YP_001308897.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] gi|149903108|gb|ABR33941.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] Length = 512 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 7/155 (4%) Query: 107 DCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+G+ N F S + +S++ DID FK IND +GHP GD V+ + + Sbjct: 352 DVLTGVYNRKYFYKIAKEKIEACSDKKHMSLLMMDIDKFKNINDTYGHPTGDVVLKKVMN 411 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 + G ++GR GGEEF ++ ++A + +R+ IEN +I + I IT Sbjct: 412 ICKELLGKKYYIGRYGGEEFLILLDNANSEKALEIGETIRRRIENLEI-LHDNKCIKITS 470 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S GI + + +I AD+ALY AK GRNRV Sbjct: 471 SFGIFTSVRERDLENMIKFADKALYEAKSLGRNRV 505 >gi|291616164|ref|YP_003518906.1| YddV [Pantoea ananatis LMG 20103] gi|291151194|gb|ADD75778.1| YddV [Pantoea ananatis LMG 20103] Length = 365 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 131/281 (46%), Gaps = 38/281 (13%) Query: 10 SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIGLTPFYGLEY 63 ++W H + + H+ +I F + + V FI+ I L F + +TP Sbjct: 82 ALWAWHIQ----YRYHSVLIDDGGFLIVSLLCVFFISAIALSDYLVAFCLHITPSMLTVL 137 Query: 64 ILVENLSLVIISITISL-LLGYISGSILK------------ELFISYNRISQLSRIDCLS 110 +L L +I +TI+L L+G+ +++ +L+ S LS +D L+ Sbjct: 138 MLDHGQHLPLILLTIALPLIGFSLQHLMRRRSEDFTLRLMYQLYEEKESFSDLSMLDPLT 197 Query: 111 GLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 GL N + L GS+ ++ DID+FK NDN+GH +GD+ +A +S + Sbjct: 198 GLYNRRGLKNRLDNILDNHVGSH----YVLLLDIDHFKAYNDNYGHAMGDQALARVSVAI 253 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITI 220 + V R GGEEF + A LA +R+ + N +I + S H+TI Sbjct: 254 RDAVRSRDVVTRYGGEEFLVLMTNVNASIAMKLAERIRQYVVNLEIPHLFNERVSTHVTI 313 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 SAGIA + + AD+ALYVAK GRN ++ + D+ Sbjct: 314 SAGIAP-IYDNEFDQAVANADRALYVAKNQGRNTILAWEDL 353 >gi|192290309|ref|YP_001990914.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] gi|192284058|gb|ACF00439.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 736 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 17/175 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFK 140 +EL I +++ + D L+GL N F + L NE+LS ++ FDID+FK Sbjct: 553 EELLIQTEDLARQAATDSLTGLANRMKFDARL---NEELSRSLRSGRPFSLIIFDIDHFK 609 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ++ND +GHPVGD+V+ LS + + R GGEEFA + A A LR Sbjct: 610 EVNDIYGHPVGDQVLVRLSRTVDASVRQADLLARWGGEEFAILLPDTDAAAAYETAKKLR 669 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ ++ IT S G+A+ + T++ RAD ALY AK +GRNRV Sbjct: 670 LLVAHTIFEHVG----TITASFGVAQVLPGDHADTLVARADNALYRAKLNGRNRV 720 >gi|115375628|ref|ZP_01462885.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1] gi|310823179|ref|YP_003955537.1| FHA/GGDEF domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|115367404|gb|EAU66382.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1] gi|309396251|gb|ADO73710.1| FHA/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1] Length = 303 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 97/179 (54%), Gaps = 13/179 (7%) Query: 88 SILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139 SI +L Y R I + + D L+ L N F +L + LS+V FD+D+F Sbjct: 119 SIQDQLEEQYQRSIYESATRDGLTRLYNKKYFTETLRKEFAYCLRHRVALSLVMFDVDHF 178 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND +GHP GD V++ ++ ++ T + R GGEEFA S+E++A A Sbjct: 179 KKINDVYGHPAGDYVLSRIAQRVGDTVRTEDLLARYGGEEFALMLRESAEEQALSCAERC 238 Query: 200 RKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R+ ++ S I SG I ++IS G+A + +P ++ AD+ LY AK++GRNRV Sbjct: 239 RQAVDRSDF-IFSGTPIKVSISLGVATLLDSDFAQP-EDLLASADKYLYRAKRAGRNRV 295 >gi|34557352|ref|NP_907167.1| hypothetical protein WS0964 [Wolinella succinogenes DSM 1740] gi|34483068|emb|CAE10067.1| conserved hypothetical protein [Wolinella succinogenes] Length = 804 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 12/165 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D L+ + N + F I L Y + LS+V FDID FK+IND +GH VGD Sbjct: 639 LEKIAYYDSLTQIYNRNKFNELITREIELLKRYKQPLSLVIFDIDRFKRINDTYGHRVGD 698 Query: 153 KVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 +V+A L+ + + T +FV R GGEEF + Q A +LA +R IE + Sbjct: 699 EVLAELAGIVSREIRSTDIFV-RWGGEEFVIVTPQTPTQGAQLLAEKIRSKIEEWKF--- 754 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G +T S G+ E I + I RAD+ LY AK +GRN+VV Sbjct: 755 EGVEECVTCSFGVTNILRLESIESAIERADELLYKAKNNGRNQVV 799 >gi|260769940|ref|ZP_05878873.1| GGDEF family protein [Vibrio furnissii CIP 102972] gi|260615278|gb|EEX40464.1| GGDEF family protein [Vibrio furnissii CIP 102972] gi|315182064|gb|ADT88977.1| GGDEF family protein [Vibrio furnissii NCTC 11218] Length = 319 Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 107/220 (48%), Gaps = 21/220 (9%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYIS---------GSILKELFISYNRI-SQLSRI- 106 F LE + ENLS+ + I L+ S LK R+ +QL+ + Sbjct: 98 FRDLERVENENLSIEEVMTLIRQLVSESRDIRHSTRFLNSQLKNASEEITRLKTQLAEVQ 157 Query: 107 -----DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D LSGL N +F L + + +SIV DID+FK ND+FGH GD VI L Sbjct: 158 KDALFDGLSGLYNRRSFDDDLSAMLHAQQSISIVLLDIDHFKTYNDDFGHLFGDTVIRAL 217 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI- 216 + ++ + R GGEEFA S + A A+ LR+ IE + + +G + Sbjct: 218 AKRIQSSCREGITAYRFGGEEFALLVPNRSLRSARQFADALRRSIEKLSVRDRRTGMQVG 277 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +IT S G+AE + + +I RAD+ LY AK GRNRV+ Sbjct: 278 NITASFGVAESEPNDTLDMLIDRADKMLYEAKNLGRNRVM 317 >gi|319782928|ref|YP_004142404.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168816|gb|ADV12354.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 263 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F +L Y E+ + ++ D+D+FKQ+ND GH VGD+V+ ++ Sbjct: 107 DGLTGMQNRRYFDDALKEYLEEFRRIEKPVGLMILDLDHFKQVNDTHGHDVGDEVLKAVA 166 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + V RLGGEEFA + A +RK I N + +S + IT Sbjct: 167 SCLKDMTRYHDVVARLGGEEFAVVTPNMDAELLGKFAERIRKAIANMSV-LSGNVRLKIT 225 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A KE RAD+ LY AK+ GRNRV Sbjct: 226 TSVGLAVWDRKETAEEFYRRADRQLYEAKRQGRNRV 261 >gi|82776895|ref|YP_403244.1| hypothetical protein SDY_1629 [Shigella dysenteriae Sd197] gi|309788684|ref|ZP_07683284.1| uncharacterized protein yneF [Shigella dysenteriae 1617] gi|81241043|gb|ABB61753.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308923506|gb|EFP69013.1| uncharacterized protein yneF [Shigella dysenteriae 1617] Length = 499 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|114763066|ref|ZP_01442496.1| two component diguanylate cyclase [Pelagibaca bermudensis HTCC2601] gi|114544390|gb|EAU47398.1| two component diguanylate cyclase [Roseovarius sp. HTCC2601] Length = 470 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 10/176 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDK 153 +Q + ID L+GL N + + E+ + ++ D+D+FKQ+ND FGH GD Sbjct: 288 AQAALIDPLTGLYNRRYALPHVARLLERATERSRGFALLLADLDHFKQVNDRFGHAAGDV 347 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ ++ +L + V R+GGEEF ++ + A +A LR + + + Sbjct: 348 VLREVARRLNSILRPSDLVARIGGEEFLVTLPDATAETAHAVAQRLRASVAARRFALPGT 407 Query: 214 PS-IHITISAGIA-ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 P+ + +T+S G+A P ++ RAD+ALY AK +GR+RV+ ++D + TC Sbjct: 408 PTRLPVTLSIGLALSGSGAAPGADALLERADRALYAAKDAGRDRVMAWADPHDTTC 463 >gi|323699780|ref|ZP_08111692.1| diguanylate cyclase [Desulfovibrio sp. ND132] gi|323459712|gb|EGB15577.1| diguanylate cyclase [Desulfovibrio desulfuricans ND132] Length = 498 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 100/211 (47%), Gaps = 24/211 (11%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P Y L VE L + + ++L + KE+ + +R D L+ L N Sbjct: 287 PGYRLGKDQVETLRSAVNHVGLALR----NALAFKEVKLRADR-------DGLTRLYNRR 335 Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 +F I Y+ LS++ FD+D+FK +ND +GH GD V+ + D L VF T Sbjct: 336 SFDERLVYEIKRRARYHHDLSLLMFDLDHFKAVNDTYGHKAGDLVLRKIGDILTTVFRTT 395 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 R GGEEF +SE+ A LA +R IEN + G +T S G+A Sbjct: 396 DLAARYGGEEFVVLLPHTSEEAAWKLAERVRTAIENCAFHF-DGRDFSVTASIGVAS-VE 453 Query: 230 KEPIST----IIYRADQALYVAKKSGRNRVV 256 +S ++ +AD+ALY AK +GRN VV Sbjct: 454 GGSLSASDDDLVLKADKALYQAKNNGRNMVV 484 >gi|313681776|ref|YP_004059514.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313154636|gb|ADR33314.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 602 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 11/172 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 +F +++QL+ D L+ + N F IS Y LSI+ DID+FK++ND Sbjct: 435 VFTDITKLNQLATQDVLTQVANRFQFDNVLEHSISLAQRYGRTLSILLIDIDFFKEVNDT 494 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH +GD V+ L+ L + R GGEEF S A LA LR + Sbjct: 495 YGHLIGDDVLKKLAHTLNEGIRKSDVIARWGGEEFVILLPDSELSSALKLAETLRAKVAE 554 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + P + IT S G+A E ++ R D+ LY AK++GRNRVV Sbjct: 555 TDFE----PVVKITCSIGVARWNEGENSDQLLKRVDEKLYTAKENGRNRVVS 602 >gi|325474704|gb|EGC77890.1| GGDEF domain-containing protein [Treponema denticola F0402] Length = 1399 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 11/175 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L + R Q + D L+G F I +L + N K S++ +D+D FK IND Sbjct: 1054 LLVESKRFQQSASYDTLTGAYTRKYFEVFFKNIIKNLYNSNSKFSLILYDLDKFKNINDT 1113 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH VGD V+ ++ ++ +GR GGEEF + Q+A A RK IEN Sbjct: 1114 YGHLVGDIVLKRVTQTILDSLSQGQILGRYGGEEFTVILPDTDSQKALKTAEYFRKKIEN 1173 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + ITIS GIA H + S ++ ADQALY +K +GRN+ ++ Sbjct: 1174 L---VFTEFDTAITISLGIATFPEHGKTTSELLSNADQALYHSKNTGRNKSTVWA 1225 >gi|157374521|ref|YP_001473121.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] gi|157316895|gb|ABV35993.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] Length = 302 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 26/210 (12%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118 YGL+ V+ + I +++ +S I+ L + + ++ D L+ L N Sbjct: 95 YGLQLGAVD---YITKPIRPAIVTARVSTQIM--LKQKSDELRNMALHDQLTQLYNRHFL 149 Query: 119 ISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 I + +N LSI+ DID+FKQ+ND FGH GD V+ ++ L Sbjct: 150 IEAANQKMAESIRHNNPLSILMIDIDHFKQVNDQFGHQAGDSVLQAVAKALAESNRKEDV 209 Query: 172 VGRLGGEEFAA----AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE- 226 V R GGEEF A ++ S+E++A L + + +++ I IT S G+AE Sbjct: 210 VARFGGEEFVALFEHCSIDSAEEKAERLRDKIERLM---------PAGIRITASFGVAEL 260 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 R ++E ++ RAD+A+Y AK+ GRNRVV Sbjct: 261 RPNEESFEQLLARADEAVYRAKELGRNRVV 290 >gi|52145223|ref|YP_086680.1| hypothetical protein BCZK5111 [Bacillus cereus E33L] gi|51978692|gb|AAU20242.1| conserved hypothetical protein, GGDEF domain in C-terminal region [Bacillus cereus E33L] Length = 351 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 S+F + F N++ +I P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F + + N+ L ++ DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHICNKRMKNDSLCLLLIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L V P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|194426131|ref|ZP_03058687.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171] gi|194416186|gb|EDX32452.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171] Length = 472 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRESYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|46201882|ref|ZP_00054146.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 383 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 117/238 (49%), Gaps = 24/238 (10%) Query: 29 IYF--SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86 +YF + FF++ +V + L ++G YG+ + V IS+T+ ++L ++ Sbjct: 152 VYFLNAAFFALRGVSV----GLDLEFMGGRLSYGITALATLWWLCVTISVTLCMVL--MA 205 Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 G L+E N Q SR D L+G LN AF ++ LS++ D+D+F Sbjct: 206 GERLQE---ELNH--QASR-DPLTGALNRRAFSGLAEKELARARRSGLPLSVLMMDLDHF 259 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 KQ+ND GH GD + + T R GGEEF A GS+ ++ ++A L Sbjct: 260 KQVNDRLGHGGGDDALCLFVALAGRLLRTEDLFCRFGGEEFLALLPGSTAVQSLVVAERL 319 Query: 200 RKI-IENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 R I E + ++ S+ +T+S GIA+ + + II RAD ALY AK GRNR Sbjct: 320 RTIFTEEAGQDVPGAASLPFAMTVSVGIAQLAEDDGLEEIIRRADAALYRAKDLGRNR 377 >gi|323702177|ref|ZP_08113844.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574] gi|323532864|gb|EGB22736.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574] Length = 316 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 12/164 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 +R+ + + D L+G N A + L + E+ L+++F DID FK ND FGH Sbjct: 152 SRLEKEAETDFLTGFFNKRAIRNILVNELERTIRYGIPLTVIFLDIDNFKTYNDTFGHVA 211 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +D + T GR GGEEF G+ E+ A +A +RK IE Sbjct: 212 GDVVLQKTADIIKNSIRTVDIAGRFGGEEFVIILPGTKEEGAVAVAERIRKSIETYPF-- 269 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 P +T+S GIA + + +++ ADQALY AK+ G+NR Sbjct: 270 ---PHRKVTVSLGIALAKNSHSVDSLLEEADQALYQAKRQGKNR 310 >gi|307308210|ref|ZP_07587919.1| diguanylate cyclase [Sinorhizobium meliloti BL225C] gi|307319677|ref|ZP_07599102.1| diguanylate cyclase [Sinorhizobium meliloti AK83] gi|306894608|gb|EFN25369.1| diguanylate cyclase [Sinorhizobium meliloti AK83] gi|306901208|gb|EFN31814.1| diguanylate cyclase [Sinorhizobium meliloti BL225C] Length = 409 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 1/137 (0%) Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + E + + D+D+FKQIND +GH GD +A +D + +GR+GGEEF Sbjct: 243 ARQEPAAFLLLDLDFFKQINDQYGHACGDMALAHFADTVSAFLAGRGVLGRIGGEEFGIV 302 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 +E++A LA D+ +++ + S I +T+S GIA E I+ ++ RAD A Sbjct: 303 LPDHTEEQARALAEDICRVVRETPAG-RSHQRIRLTVSIGIAAAIAGETITDVMIRADLA 361 Query: 244 LYVAKKSGRNRVVCFSD 260 LY +K GR+R D Sbjct: 362 LYDSKADGRDRCSVARD 378 >gi|49480448|ref|YP_039404.1| hypothetical protein BT9727_5094 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332004|gb|AAT62650.1| conserved hypothetical protein, GGDEF domain in C-terminal region [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 351 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 S+F + F N++ +I P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F I + N+ L ++ DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L V P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|82702630|ref|YP_412196.1| diguanylate cyclase [Nitrosospira multiformis ATCC 25196] gi|82410695|gb|ABB74804.1| diguanylate cyclase (GGDEF domain) [Nitrosospira multiformis ATCC 25196] Length = 360 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 11/182 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYF 139 L +L +R+ + + D L+G++N+ + SL G L ++ D+D+F Sbjct: 180 LDKLRAEASRLQERTWTDELTGVMNYRKLMESLEHHVQRAERRGQERSSLCLIMSDLDFF 239 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND +GH VGD V+ L+ ++ +GR GGEEF + + A ++A + Sbjct: 240 KKINDTYGHMVGDLVLQHLARRIKSATRDFDMIGRFGGEEFVVIMADTDLELAKVIAERI 299 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 R + ++ +I +IH+TIS G+A E +++ RAD A+Y AK+ GRN VV Sbjct: 300 RLGVMSTPFHIKKF-NIHVTISLGVAMLKPGESRESLLERADAAMYEAKRRGRNCVVTTK 358 Query: 260 DI 261 ++ Sbjct: 359 EM 360 >gi|170728813|ref|YP_001762839.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169814160|gb|ACA88744.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 332 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFI-----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 + +L+ D L+G N + S+ S ++ L+++ D+D+FKQ+NDNFGH GD V Sbjct: 153 LHKLALTDPLTGTNNRLSLQERFNQSTQVSEHKPLTLLLLDVDHFKQVNDNFGHVAGDDV 212 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ L+ + + + R+GGEEF SS QE+ LA LR +E +S G Sbjct: 213 LKSIAN-LLTKYTDDLDLFRIGGEEFCIFLHNSSTQESLTLAQTLRANVERETF-VSQGL 270 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I TIS G+ + ++ AD+ LY AK SGRNRV+ Sbjct: 271 KIQATISIGVTLFKEDMQLCDLLRSADEQLYRAKLSGRNRVM 312 >gi|238920501|ref|YP_002934016.1| hypothetical protein NT01EI_2613 [Edwardsiella ictaluri 93-146] gi|238870070|gb|ACR69781.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 302 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 6/166 (3%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFG 147 L+ L R+ L+ D L+GL N F SSL S S+ D+D+FKQIND FG Sbjct: 132 LRYLARVRGRLRYLALFDDLTGLPNRRHFYSSLMSQPLPRHFSLFIIDLDHFKQINDEFG 191 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+V+ L F +P F R+GGEEFA SE A + R + + S Sbjct: 192 HAVGDRVLCQFGRLLHSEFVSPAFPARIGGEEFAVVL--ESEDRAWLETRAARLLQQASM 249 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + I+ + ++I GI E ++ + R D LY AK +GRN Sbjct: 250 VRITEQRGLTVSIGVGIY--AAGETLAHFVARVDGGLYQAKGAGRN 293 >gi|327395332|dbj|BAK12754.1| response regulator PleD [Pantoea ananatis AJ13355] Length = 525 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 6/152 (3%) Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+GL N F ++E+ S + DID+FK+IND FGH GD+V+ L+ L Sbjct: 365 DPLTGLNNRRGFYIQAAQHSEEPVQSAIAIDIDHFKKINDRFGHDAGDEVLVCLAGLLRK 424 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 T + R GGEEF G++ +AA +A +R+ + + S +T+S G+ Sbjct: 425 RCRTLDVISRFGGEEFILLLPGTALNDAAAMAERIREAVSKTSFPFISA----MTVSLGV 480 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 A E ++ RAD+ALY AK GRNRV+ Sbjct: 481 ATLSETEDKDALLRRADEALYAAKGDGRNRVM 512 >gi|239833037|ref|ZP_04681366.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239825304|gb|EEQ96872.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 423 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 80/158 (50%), Gaps = 9/158 (5%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S D LSGLLN F I + LS+V DID+FK IND GH +GD+VIA Sbjct: 244 SETDQLSGLLNRRGFEFRAEAAIEKSKRMRQALSLVLCDIDHFKAINDTHGHALGDRVIA 303 Query: 157 FLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 S +L G R+GGEEFA G++ Q A A R + + I +G + Sbjct: 304 AFSAELRKAANGKNGISARIGGEEFAIILPGNTIQSAWRFAEKARLVCRDIHIPGRNG-A 362 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I T S GIAE + S + RAD ALY AKK GRN Sbjct: 363 IVFTASFGIAEMEFDDVFSDLYKRADGALYEAKKGGRN 400 >gi|300717220|ref|YP_003742023.1| diguanylate cyclase [Erwinia billingiae Eb661] gi|299063056|emb|CAX60176.1| diguanylate cyclase [Erwinia billingiae Eb661] Length = 464 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 18/242 (7%) Query: 26 TFMIYFSIFFSIF--IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83 ++ I+F+ ++ I +I +A+ L G F+ ++ + L + ++TIS L+ Sbjct: 223 SYPIFFTCLLTLLTGITEIILVASKVLTIQGSDDFFRIDSLASARLG--VAAMTISPLIV 280 Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFD 135 +S + K+L RI++ + D L+G L S S L + + ++ D Sbjct: 281 ALSTTANKKLV---ARITKRADYDFLTGALTRSGLSSQLNALIARKNKTSGFYGAVFVVD 337 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID FK IND +GH GD+V+A + + + R+GGEEF G S+ A +L Sbjct: 338 IDRFKNINDTYGHAAGDQVLAKTVECIRQSLQQTAIISRMGGEEFLVLIEGISQPRAYLL 397 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 A+ LR+ IE + I ++ ++ +T+S GI+ + I AD+ LY+AK SGRN Sbjct: 398 ADRLRQSIERNTIMLNE-QNLSVTVSIGISTLHVIDAGSLDESIKNADEQLYIAKSSGRN 456 Query: 254 RV 255 RV Sbjct: 457 RV 458 >gi|154253692|ref|YP_001414516.1| diguanylate cyclase [Parvibaculum lavamentivorans DS-1] gi|154157642|gb|ABS64859.1| diguanylate cyclase [Parvibaculum lavamentivorans DS-1] Length = 351 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 9/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 L EL + + +R D L+G+ N AF +++ + N L + DID+FK+ Sbjct: 162 LDELQQNLEKAHTEARTDGLTGVNNRKAFDEALARAMAAASTSNAPLCLAIGDIDHFKKF 221 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH GD+V+ +++ L FV R GGEEFA + A ++N +R+ Sbjct: 222 NDTFGHRTGDQVLRLVANCLKTGALEQHFVARYGGEEFAVIMPATDIATAEAISNKIRET 281 Query: 203 IENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ + + S+G S+ +T+S GIA + +++I RAD LY AK +GRNR++ Sbjct: 282 VQARELVKRSTGESLGRVTMSMGIALLRDTDSAASLIERADGCLYDAKHAGRNRII 337 >gi|26990637|ref|NP_746062.1| GGDEF domain-containing protein [Pseudomonas putida KT2440] gi|24985623|gb|AAN69526.1|AE016586_5 GGDEF domain protein [Pseudomonas putida KT2440] Length = 402 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 13/169 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHP 149 R++ + +D L+G+L SAF + E L+++ DID+FK IND GH Sbjct: 225 RLAHQATVDHLTGVLTRSAFTRRANALLESRQQHAQALPLTLMMLDIDHFKSINDAHGHA 284 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ + L + RLGGEEF G + + A A LR+ I++ + Sbjct: 285 VGDQVLRQFASTLQDQLHNDELIARLGGEEFVVILPGLAPERANFTAERLRRAIQDLHVT 344 Query: 210 ISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255 + + IT+S G+A P + ++ ADQALY AK GRNRV Sbjct: 345 -QADQRLQITVSIGVAGCDADMPAPSLDELLASADQALYRAKARGRNRV 392 >gi|320159491|ref|YP_004172715.1| hypothetical protein ANT_00810 [Anaerolinea thermophila UNI-1] gi|319993344|dbj|BAJ62115.1| hypothetical protein ANT_00810 [Anaerolinea thermophila UNI-1] Length = 1051 Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 14/174 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVG 151 + +L R D L+G+ N F +SL + +++ D+D+FK++ND +GH VG Sbjct: 875 LERLVRTDPLTGVFNRGHFFASLDEEFAREQAWERRRYAVILLDVDHFKRVNDQYGHLVG 934 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ + ++D L V R GGEEF +S EA +A +R++IE + Sbjct: 935 DQALITIADILRKNVRMRDIVARYGGEEFVIYMPETSVGEARAVAERIRRVIEEQTRVLH 994 Query: 212 SGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 P +T S GIA + +E ++ RAD ALY AK GRN VV + + E Sbjct: 995 GFP---VTASMGIAVKSSEEEGTRFDEVLQRADTALYTAKHRGRNCVVVYGEAE 1045 >gi|118480445|ref|YP_897596.1| GGDEF domain-containing protein [Bacillus thuringiensis str. Al Hakam] gi|118419670|gb|ABK88089.1| possible GGDEF domain protein [Bacillus thuringiensis str. Al Hakam] Length = 351 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 S+F + F N++ +I P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F I + N+ L ++ DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L V P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRTA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|110805543|ref|YP_689063.1| hypothetical protein SFV_1581 [Shigella flexneri 5 str. 8401] gi|110615091|gb|ABF03758.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 472 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|42528080|ref|NP_973178.1| GGDEF domain-containing protein [Treponema denticola ATCC 35405] gi|41819125|gb|AAS13097.1| GGDEF domain protein [Treponema denticola ATCC 35405] Length = 1774 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 11/175 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L + R Q + D L+G F I +L + N K S++ +D+D FK IND Sbjct: 1429 LLVESKRFQQSASYDTLTGAYTRKYFEVFFKNIIKNLYNSNSKFSLILYDLDKFKNINDT 1488 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH VGD V+ ++ ++ +GR GGEEF + Q+A A RK IEN Sbjct: 1489 YGHLVGDIVLKRVTQTILDSLSQGQILGRYGGEEFTVILPDTDSQKALKTAEYFRKKIEN 1548 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + ITIS GIA H + S ++ ADQALY +K +GRN+ ++ Sbjct: 1549 L---VFTEFDTAITISLGIATFPEHGKTTSELLSNADQALYHSKNTGRNKSTVWA 1600 >gi|296284762|ref|ZP_06862760.1| diguanylate cyclase [Citromicrobium bathyomarinum JL354] Length = 365 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 9/173 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 +L + +R +++D L+GL N AF L + E LS+ F DID FK IND Sbjct: 183 KLRKNLDRARHDAQVDYLTGLPNRRAFEEVLETSYLEAQDTGEPLSVAFCDIDQFKAIND 242 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD++I +++ L + ++ R GGEEF G QEA ++ R+ + Sbjct: 243 THGHEAGDRIIREIAETLSSLCAKDCYIARHGGEEFVLLFRGVEPQEALAQLDEAREALA 302 Query: 205 NSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ++ + P +T S GIA+ + ADQALY AK+SGRNR+ Sbjct: 303 SRRMVNRRTEKPFGMVTFSGGIADVLQCADPREALAAADQALYCAKRSGRNRI 355 >gi|239995752|ref|ZP_04716276.1| hypothetical protein AmacA2_14896 [Alteromonas macleodii ATCC 27126] Length = 761 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 4/166 (2%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVG 151 ++ ++ L+ D L+GL N AF+ S++++ + DID+FK++ND +GH G Sbjct: 593 VAEEKLRHLAMTDSLTGLYNRRAFLDECISFSKQHCRGCVAIVDIDHFKKVNDTYGHDAG 652 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ + ++ ++ P V RLGGEEFA +G ++E LR +E ++ Sbjct: 653 DQALIAVARKIAKHNQAPNVVARLGGEEFAIVMIGDKKEEIHRQLEALRIAVEEGRVTYK 712 Query: 212 SGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ I+I A + + S ++ AD+ALY AK+ GRN+VV Sbjct: 713 TDTMNLSISIGATFIKDTFEADFSALLSLADKALYRAKEQGRNQVV 758 >gi|229588170|ref|YP_002870289.1| putative GGDEF domain response regulator [Pseudomonas fluorescens SBW25] gi|229360036|emb|CAY46890.1| putative GGDEF domain response regulator [Pseudomonas fluorescens SBW25] Length = 556 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L N+ LS DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARRENKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L ++GR GGEEFA + + A + +++R ++I+ + P + Sbjct: 439 LFLKQRLRKTDYIGRYGGEEFAIVMPDTDLESACKVLDEIRGRF--AEIHYPAQPQDLWC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ E C + +AD+ALY AK +GRNRV Sbjct: 497 TFSAGLVELCDDSDSLMMAAQADEALYRAKHAGRNRV 533 >gi|188532547|ref|YP_001906344.1| hypothetical protein ETA_03900 [Erwinia tasmaniensis Et1/99] gi|188027589|emb|CAO95436.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99] Length = 522 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 103/216 (47%), Gaps = 34/216 (15%) Query: 66 VENLSLVIISITISLLLG--------YISGSILKELFISYNR--------ISQLSRIDCL 109 +ENL+ + S T L G Y LK+ F +Y+R + + D L Sbjct: 307 LENLTRLTSSGTAGRLSGKVDEIETWYREADRLKKAFQAYSRTINKTFSILRDDALTDHL 366 Query: 110 SGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 + L N + F+ GS+ S+ DID+FKQ+ND FGH GD+V+ +S L Sbjct: 367 TKLHNRRGFDQLTAPFVGGQGSH----SLALIDIDHFKQVNDQFGHDTGDEVLVAVSGLL 422 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITIS 221 T + R GGEEFA ++ EA + N +R+ I N Q P+ IHITIS Sbjct: 423 KKGCRTQDIICRFGGEEFAILFPDTTLTEAGRVVNRIRENIANVQF-----PAVIHITIS 477 Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 AG+ E + + ADQ LY AK GRNRVV Sbjct: 478 AGVCELAQDGDDREKALAVADQLLYRAKHEGRNRVV 513 >gi|119944956|ref|YP_942636.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii 37] gi|119863560|gb|ABM03037.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii 37] Length = 307 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 8/180 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 I ++L + ++ L+ D L+ LLN A+ +S +N+ S++F D+D+FK Sbjct: 122 KIERQLAEANKQLKLLADHDSLTNLLNARAYYEVCERMMSIALRHNKPFSVLFVDLDHFK 181 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND GH VGD ++ +S ++ +GR+GGEEF+ + A I A LR Sbjct: 182 KINDTHGHHVGDLLLKAVSACILETCRDSDLIGRVGGEEFSLFLPETGMSGAMIFAEKLR 241 Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 IE + + +I IT S G+A + H + I I AD A+Y AK GRN+V C S Sbjct: 242 SNIEQLLHPVGTDKNIGITASIGVASKLIHHKAIVDIQRDADHAMYHAKHKGRNQVSCLS 301 >gi|197337031|ref|YP_002157745.1| ggdef domain protein [Vibrio fischeri MJ11] gi|197314283|gb|ACH63732.1| ggdef domain protein [Vibrio fischeri MJ11] Length = 483 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 9/163 (5%) Query: 101 SQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 S+L+ D L+G N +FI + + N+ S+ FDIDYFKQIND +GH +GD+ Sbjct: 318 SKLALFDDLTGSCNRRCFEAKVLSFIQNYHAKNQTFSVALFDIDYFKQINDTYGHEIGDE 377 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ S + + RLGG+EF + +EA ++ N L I +I I +G Sbjct: 378 VLRLFSRACENICESDDHFARLGGDEFVMLLSDKNIEEATVILNQLLDSIRMIEIRI-NG 436 Query: 214 PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 + +T S G++E ++ RAD+ALY AK+ GRN+V Sbjct: 437 QLVQLTSSIGVSEMNDDVFDACKLLSRADEALYEAKRLGRNQV 479 >gi|71279208|ref|YP_270299.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71144948|gb|AAZ25421.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 722 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 10/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + QL+ D L+G +N F I+++ ++ LSI+ DID+FK +ND +GH V Sbjct: 552 DHFQQLALTDALTGAVNRHHFNEVLDQEIANVNNHGSPLSIMLLDIDHFKSVNDRYGHGV 611 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ V + V R+GGEEF + A A LR+ I ++NI Sbjct: 612 GDEVLVMFYQTCVEAVRSSDVVARIGGEEFVIIMPNTQLVNAQKFAERLRQKIAKLELNI 671 Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256 ++ I +T+S G+++ + T + AD++LY AK SGRN+VV Sbjct: 672 ANNQ-ISVTVSIGVSQWQSEYFTNAETFVAHADKSLYQAKNSGRNKVV 718 >gi|157158328|ref|YP_001462807.1| diguanylate cyclase [Escherichia coli E24377A] gi|193064244|ref|ZP_03045327.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22] gi|193067200|ref|ZP_03048169.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E110019] gi|218554056|ref|YP_002386969.1| putative membrane-associated diguanylate cyclase [Escherichia coli IAI1] gi|218695060|ref|YP_002402727.1| putative membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia coli 55989] gi|260843827|ref|YP_003221605.1| hypothetical protein ECO103_1652 [Escherichia coli O103:H2 str. 12009] gi|260855237|ref|YP_003229128.1| hypothetical protein ECO26_2123 [Escherichia coli O26:H11 str. 11368] gi|260867961|ref|YP_003234363.1| hypothetical protein ECO111_1918 [Escherichia coli O111:H- str. 11128] gi|293445925|ref|ZP_06662347.1| yneF protein [Escherichia coli B088] gi|300819507|ref|ZP_07099702.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] gi|300823506|ref|ZP_07103635.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7] gi|300903813|ref|ZP_07121720.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|300927382|ref|ZP_07143103.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] gi|331667921|ref|ZP_08368778.1| putative GGDEF domain protein [Escherichia coli TA271] gi|331677407|ref|ZP_08378082.1| putative GGDEF domain protein [Escherichia coli H591] gi|157080358|gb|ABV20066.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E24377A] gi|192929092|gb|EDV82703.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22] gi|192959790|gb|EDV90224.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E110019] gi|218351792|emb|CAU97508.1| putative membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia coli 55989] gi|218360824|emb|CAQ98391.1| putative membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia coli IAI1] gi|257753886|dbj|BAI25388.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257758974|dbj|BAI30471.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257764317|dbj|BAI35812.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|291322755|gb|EFE62183.1| yneF protein [Escherichia coli B088] gi|300404195|gb|EFJ87733.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|300416677|gb|EFJ99987.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] gi|300523976|gb|EFK45045.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7] gi|300527914|gb|EFK48976.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] gi|315253944|gb|EFU33912.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1] gi|323156620|gb|EFZ42764.1| hypothetical protein ECEPECA14_1499 [Escherichia coli EPECa14] gi|323176627|gb|EFZ62219.1| hypothetical protein ECOK1180_5329 [Escherichia coli 1180] gi|323185968|gb|EFZ71325.1| hypothetical protein ECOK1357_0698 [Escherichia coli 1357] gi|324020278|gb|EGB89497.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3] gi|324119306|gb|EGC13193.1| GGDEF domain-containing protein [Escherichia coli E1167] gi|331064885|gb|EGI36787.1| putative GGDEF domain protein [Escherichia coli TA271] gi|331073867|gb|EGI45187.1| putative GGDEF domain protein [Escherichia coli H591] Length = 472 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|255028254|ref|ZP_05300205.1| hypothetical protein LmonL_01604 [Listeria monocytogenes LO28] Length = 321 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 11/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N F ++ ++N LS++ DIDYFK++ND +GH VG+ Sbjct: 148 LQQSTILDPLTGLTNFRHFENAFDAAFNHATLKKSNLSVIIIDIDYFKRVNDTYGHLVGN 207 Query: 153 KVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V++ S L+ + F + R+GGEEFA + E LA +R+ +E + I Sbjct: 208 GVLSTFSQMLLKISFPPNTVISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIV 267 Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA + S ++ ADQALY AK++GRN+V Sbjct: 268 ASGSV-ITISAGIANYDGRNYPSANELLNAADQALYNAKRNGRNQV 312 >gi|94263497|ref|ZP_01287309.1| GGDEF [delta proteobacterium MLMS-1] gi|93456135|gb|EAT06278.1| GGDEF [delta proteobacterium MLMS-1] Length = 525 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 17/260 (6%) Query: 13 LCHEKNLESFSP--HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70 L H++ + P H+F + + ++ I ++ +G Y + LV Sbjct: 262 LRHDRRFQQQLPDEHSFTWKVMVGNQPWAVNLLRIHDVEQQPVGYLISYAPDNFLVALRK 321 Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128 I+S+ ++ LL G +L L S + + +L+ D L+GL N +F+ LG E+ Sbjct: 322 EFIVSLLVAWLLAAGLGLLLVLLARSRDEMLRLATTDPLTGLANRRSFMDRLGLEQERFK 381 Query: 129 -----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + ++ DID+FK++ND GH VGD+V+ + + VGRLGGEEFA Sbjct: 382 RFGNPVGLLMLDIDFFKKVNDTHGHHVGDEVLGQFATLMRQNLRHVDLVGRLGGEEFAVV 441 Query: 184 ALGSSEQEAAILANDLR-KIIENSQINI------SSGPSIHITISAGIAE-RCHKEPIST 235 G+ + A LR + E Q + +S ++IT+S G+A + + + Sbjct: 442 LPGADLKGTLHFAERLRCGVGERLQGEVCGHRFSTSAGILNITVSIGVAVLQPGDDGVEP 501 Query: 236 IIYRADQALYVAKKSGRNRV 255 +++RAD A+Y AK++GRNR+ Sbjct: 502 VLHRADTAMYRAKENGRNRI 521 >gi|302338207|ref|YP_003803413.1| response regulator receiver modulated diguanylate cyclase [Spirochaeta smaragdinae DSM 11293] gi|301635392|gb|ADK80819.1| response regulator receiver modulated diguanylate cyclase [Spirochaeta smaragdinae DSM 11293] Length = 342 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 8/176 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 I +EL S R+ +++R D LSGLLN + ++ E+ LS + D+D+FK Sbjct: 165 KINQELETSNRRLEKIARFDILSGLLNRMSLFHTIDIEIERAVRTGRNLSGIMVDLDFFK 224 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 INDN GH GD+ I + L+ GR GGEEF S+ +++ +A LR Sbjct: 225 MINDNHGHLAGDEAIRMVGKVLIQEMRRYDQAGRYGGEEFFVVLPDSNGEQSLGIAERLR 284 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 K +E+S I +T S G+ E I RAD+A+Y AK+ GRNRVV Sbjct: 285 KKLESSPFFFDR-KKISLTASFGVTTFKPGESREHWIGRADRAMYQAKQGGRNRVV 339 >gi|74317057|ref|YP_314797.1| response regulator receiver modulated diguanylate cyclase [Thiobacillus denitrificans ATCC 25259] gi|74056552|gb|AAZ96992.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus denitrificans ATCC 25259] Length = 393 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 10/176 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFK 140 +I+K Y + + D L+GLLNHS+ +S + LS+V DID+FK Sbjct: 210 TIVKSKIERYRALRRSMYHDSLTGLLNHSSGKNTLDMVLSGIAHEEGTLSVVMIDIDHFK 269 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 QIND++GHP GD+VI LS L + R GGEEF + +A + +R Sbjct: 270 QINDSYGHPTGDQVIRSLSWLLKQRLRKHDILCRYGGEEFLVGLPHTDAGQALAILERVR 329 Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + +QI ++SAG+A H++ +I AD+ALY AK GRNRV Sbjct: 330 Q--DFAQIRHPYRDTHFSASVSAGVASYPHQQSGDALIKAADEALYQAKHRGRNRV 383 >gi|324329362|gb|ADY24622.1| hypothetical protein YBT020_27000 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 351 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 22/222 (9%) Query: 47 NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRI 100 N++ +I P +L +++S+V + + S + YI+ +L+ ELF ++ Sbjct: 135 NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQSNELF---QKM 187 Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 Q + ID L+GL N F I + N+ L ++ DID+FK +ND +GHP GD+ Sbjct: 188 KQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSVNDTYGHPAGDE 247 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + L V P R GGEEFA + +R +E + G Sbjct: 248 VLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEKVRAAVEKHSFQLLDG 307 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 308 TKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|281600984|gb|ADA73968.1| Diguanylate cyclase (GGDEF) domain protein [Shigella flexneri 2002017] gi|332758748|gb|EGJ89067.1| hypothetical protein SF274771_1921 [Shigella flexneri 2747-71] gi|332758917|gb|EGJ89231.1| hypothetical protein SFK671_1972 [Shigella flexneri K-671] gi|333018171|gb|EGK37473.1| hypothetical protein SFK304_2187 [Shigella flexneri K-304] Length = 472 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|293414875|ref|ZP_06657518.1| yneF protein [Escherichia coli B185] gi|331652890|ref|ZP_08353895.1| putative GGDEF domain protein [Escherichia coli M718] gi|291432523|gb|EFF05502.1| yneF protein [Escherichia coli B185] gi|331048988|gb|EGI21060.1| putative GGDEF domain protein [Escherichia coli M718] Length = 472 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|206970418|ref|ZP_03231371.1| ggdef family protein [Bacillus cereus AH1134] gi|206734995|gb|EDZ52164.1| ggdef family protein [Bacillus cereus AH1134] Length = 352 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 18/208 (8%) Query: 65 LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118 L++ + +V + + S++ GYI+ +L+ ELF ++ Q + ID L+GL N F Sbjct: 150 LIKEIHIVGLYLISSIITGYITFISANYVLQSNELF---QKMKQYATIDALTGLGNVRQF 206 Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 IS+ N+ ++ DID+FK +ND +GHP GD+V+ + L P Sbjct: 207 DLEMNRHISNKNMKNDSFCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDL 266 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 R GGEEFA ++ +R +E+ + I IT+S G++E ++E Sbjct: 267 AFRKGGEEFALLIPNKGLAYGILMGEQIRTAVESHSFQLLDETKIKITVSVGVSE--YEE 324 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259 I AD ALY +K++GRN+V S Sbjct: 325 STEQFIQAADDALYYSKRNGRNKVSSVS 352 >gi|319794454|ref|YP_004156094.1| diguanylate cyclase with gaf sensor [Variovorax paradoxus EPS] gi|315596917|gb|ADU37983.1| diguanylate cyclase with GAF sensor [Variovorax paradoxus EPS] Length = 356 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 85/169 (50%), Gaps = 22/169 (13%) Query: 104 SRIDCLSGLLNHSAFISSL-GSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVI- 155 S D L+ L N + L ++N LS++ D+D+FK+IND GHP GD+V+ Sbjct: 194 SMTDPLTSLWNRRSLDRRLHAAWNLHVREAAPLSLLMIDLDHFKRINDAHGHPTGDRVLV 253 Query: 156 ---AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 A + DQ+ G R GGEEF G A A LR+ +E+ +S Sbjct: 254 QAAAIIRDQI----GHDGLAARFGGEEFCVVLPGMDAGTAQQRAEQLRRALED-----AS 304 Query: 213 GPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259 P + +T S G+A E S ++ RAD+ALYVAK+ GRNRV F Sbjct: 305 WPDVKVTASIGVATATADEDGSPNVMLTRADRALYVAKRDGRNRVRHFE 353 >gi|251794416|ref|YP_003009147.1| diguanylate cyclase [Paenibacillus sp. JDR-2] gi|247542042|gb|ACS99060.1| diguanylate cyclase [Paenibacillus sp. JDR-2] Length = 533 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N + + ++ S++ D+D+FK +ND GH +GD+V+ F++ +V Sbjct: 373 DALTGLTNRRTMGAITALWKQQGTPFSVIIMDLDHFKNVNDRHGHQMGDEVLKFVAGIMV 432 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 G + R GGEEF ++E EA +A +R IE S I +T+S G Sbjct: 433 SERGPDDYCCRFGGEEFTMLLPHATEAEAVQVAERIRLRIEQSVTPIGES----VTMSLG 488 Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +A E + + ADQALY AK+ GRNR V +S + N Sbjct: 489 VATFPDAAEEVVELFKYADQALYQAKRDGRNRTVAYSSLMN 529 >gi|90418217|ref|ZP_01226129.1| conserved hypothetical membrane protein with GGDEF domain [Aurantimonas manganoxydans SI85-9A1] gi|90337889|gb|EAS51540.1| conserved hypothetical membrane protein with GGDEF domain [Aurantimonas manganoxydans SI85-9A1] Length = 390 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 11/195 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAFISSLGSY 125 S++ I + I+++ SG+ + L ++Y R+++ R D L+GL N AF L Sbjct: 194 SVLQIHLLIAVIHTTASGAFV--LSVAYERMARDLRHAAMHDALTGLPNRRAFEQRLEKA 251 Query: 126 NEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + ++V FD+D+FK IND +GH GD+ + + V FV R+GGEEFAA Sbjct: 252 LQDRGHFALVVFDLDHFKSINDRYGHAAGDEALRRCALLCPSVLRQQDFVARVGGEEFAA 311 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRAD 241 G + EA +L + +R + ++I + S +T+SAGIA E ++ AD Sbjct: 312 ILPGVTPTEAFMLTDGVRSTVAATRI-AADDVSFGLTLSAGIAHSAEGEASFDRLMRAAD 370 Query: 242 QALYVAKKSGRNRVV 256 LY AK GRNR+ Sbjct: 371 ANLYRAKNGGRNRIA 385 >gi|320176991|gb|EFW52014.1| hypothetical protein SDB_00545 [Shigella dysenteriae CDC 74-1112] gi|320186884|gb|EFW61602.1| hypothetical protein SGF_00911 [Shigella flexneri CDC 796-83] Length = 472 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|91791896|ref|YP_561547.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91713898|gb|ABE53824.1| diguanylate cyclase [Shewanella denitrificans OS217] Length = 321 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS+ D L+ L N + + Y + S+V DID FKQIND +GHP GDKVI Sbjct: 154 LSQTDGLTQLHNRRHWQECMEHEFERFNRYADIASLVMIDIDNFKQINDKYGHPAGDKVI 213 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L GR GGEEF+A ++ +A LR IE S+++ Sbjct: 214 QHIAHLLKNALRETDCAGRYGGEEFSAVLAKTNATDALQFTERLRTQIEASEVSYKD-QK 272 Query: 216 IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I +T+S GI A S+ + AD+ALY AK+ GRN+ V ++D Sbjct: 273 IKVTVSLGINALHSGMGSSSSWLSGADKALYQAKQMGRNKSVIYTD 318 >gi|160898478|ref|YP_001564060.1| diguanylate cyclase [Delftia acidovorans SPH-1] gi|160364062|gb|ABX35675.1| diguanylate cyclase [Delftia acidovorans SPH-1] Length = 246 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 98/201 (48%), Gaps = 8/201 (3%) Query: 62 EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121 E +L E LV S L + ++ L+EL + + D L+G+LN +A I Sbjct: 48 ERLLRETRRLVRRSDRAELEMTQLN-QRLQEL---AGELEYRATHDPLTGVLNRAAIIER 103 Query: 122 LGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 + + + L+++ DID+FK++ND+FGHPVGD VI + L +GR+GGEE Sbjct: 104 VNRHFTQQGLALIVLDIDHFKRVNDSFGHPVGDSVILGVVRCLKAAVPATAHIGRVGGEE 163 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F A +A +R IE + IT S G++ R Sbjct: 164 FTVLLPQHDSDGAVCVAEQVRAAIEAHPFGLPDASC--ITASFGVSWRPSGGRFDDAYSL 221 Query: 240 ADQALYVAKKSGRNRVVCFSD 260 AD+ALY AK+SGRN+VV +D Sbjct: 222 ADEALYAAKRSGRNQVVRAAD 242 >gi|300917800|ref|ZP_07134444.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1] gi|300414988|gb|EFJ98298.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1] gi|323937350|gb|EGB33628.1| GGDEF domain-containing protein [Escherichia coli E1520] Length = 472 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+ + + S +L S + K L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 306 DFLTQVYSRSGLYEALKSLSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|90412943|ref|ZP_01220942.1| hypothetical sensory box/GGDEF family protein [Photobacterium profundum 3TCK] gi|90326122|gb|EAS42556.1| hypothetical sensory box/GGDEF family protein [Photobacterium profundum 3TCK] Length = 326 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 9/171 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGH 148 S +++ LS D L+ L N + + L E+ ++V FDID+FK++ND FGH Sbjct: 146 SNKQLTHLSMTDRLTQLYNRGHWETCLAEEFERCRQTQTPSTLVMFDIDHFKKVNDTFGH 205 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD VI +S+ L GR GGEEF +S LR+ IE S++ Sbjct: 206 VAGDGVIRIVSNVLRRTKRQSDIAGRYGGEEFGIILPYTSSDMGQYFTERLRQRIEQSRV 265 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 N+ SI++TIS G+ E + + AD+ALY++K+SGRN+ F Sbjct: 266 NVDV-RSINVTISLGVCEWYPELRNYEQWLEHADKALYISKQSGRNQSTVF 315 >gi|114047770|ref|YP_738320.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113889212|gb|ABI43263.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 341 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 6/160 (3%) Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G LN AF + L E ++F DID+FK NDN+GH +GD+V+ ++ +L Sbjct: 182 DALTGCLNRRAFDADIAGMLAQAPEGTCLIFVDIDHFKAFNDNYGHQLGDQVLKAVAKRL 241 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITI 220 + R GGEEFA S + A LA +R+ +E + HIT Sbjct: 242 QEACRDGCKLYRFGGEEFAIVVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDQRIDHITA 301 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S G+A+ K+ + +I + D+ LY AK+ GRNRV+ S+ Sbjct: 302 SFGVAQWQEKQSVMQLIEKTDKLLYEAKRLGRNRVMPISN 341 >gi|114562263|ref|YP_749776.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114333556|gb|ABI70938.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 357 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 127/269 (47%), Gaps = 41/269 (15%) Query: 27 FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY--GLEYILVENLS-LVIISI------- 76 + +Y +F+ +F V +++F + Y GL Y LV L L II+I Sbjct: 80 YSLYILMFYLVFTGGVEQTGPLWIFIVAPVSVYVLGLSYGLVNLLFFLSIIAIIMFSPIE 139 Query: 77 -----------TISLLLGYISGSILKELF-----ISYN-------RISQLSRIDCLSGLL 113 + L+L +++ + L L+ +SYN + QL+ D L+ L Sbjct: 140 MPQYATYSTEFKVRLILSFLTTTFLSALYEYSRMLSYNSALKLGKKYQQLALSDPLTTLA 199 Query: 114 NHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N + S + NE LS++ D+D+FK +ND +GH GD V+ LS Sbjct: 200 NRRNALTILQQEKSRISRNNEPLSVLLCDLDHFKMVNDKYGHNCGDMVLTELSQVFKQSV 259 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 V R GGEEF +S ++A+++A +R + + +++ I +TIS GI++ Sbjct: 260 RQQDCVARWGGEEFLFILPQTSAEQASVIAEKIRTNVHHHKVHFLKH-EISLTISIGISQ 318 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I +I AD+ LY AKK+GRN+V Sbjct: 319 LTDDQNIDELINNADRNLYQAKKNGRNQV 347 >gi|320201800|gb|EFW76376.1| hypothetical protein ECoL_01032 [Escherichia coli EC4100B] Length = 472 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|288957768|ref|YP_003448109.1| hypothetical protein AZL_009270 [Azospirillum sp. B510] gi|288910076|dbj|BAI71565.1| hypothetical protein AZL_009270 [Azospirillum sp. B510] Length = 342 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 97/205 (47%), Gaps = 16/205 (7%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 I E +V + L L S L E+ +S + + + D L+G+ N AF L Sbjct: 138 IAAETREIVDRQTALQLQL-QESSHQLAEMRVSLDSARREALTDALTGIGNRKAFDQMLE 196 Query: 124 SYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 E LS++ DID+FK ND GH VGD V+ ++ L R G Sbjct: 197 EAMETSVRDEQPLSLLMVDIDHFKTFNDIHGHLVGDHVLKLVARMLTECIKGRDTATRYG 256 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI-----NISSGPSIHITISAGIAERCHKE 231 GEEFA +S + A+ LA +R + QI N + G + +S G+A+ E Sbjct: 257 GEEFAIILPRTSLENASKLAEQVRGFVGARQIVNKARNANYGT---VALSVGVAQYRPGE 313 Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256 P +++ RADQALY AK+ GRNRV Sbjct: 314 PAMSLVRRADQALYAAKRGGRNRVT 338 >gi|291287894|ref|YP_003504710.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus DSM 12809] gi|290885054|gb|ADD68754.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus DSM 12809] Length = 300 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 88/165 (53%), Gaps = 10/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGD 152 + +LS ID L+G N F L +EK L I+ FD+D+FK IND +GH GD Sbjct: 135 LKELSYIDGLTGAYNRRTFEHRLAEEFNRHKRDEKPLGIIMFDLDFFKNINDKYGHQFGD 194 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ + T F+ R GGEEF + + + ++A LR+ +E + IS+ Sbjct: 195 VVLQQTAKLCKEKLRTEDFLARYGGEEFVCLLINQNVDQTYLVAERLRESLEKAV--ISN 252 Query: 213 GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G S+ ITIS GI++ + +I AD+ALY AK +GRN VV Sbjct: 253 GDVSVSITISIGISDSKYASTPEELIQCADKALYEAKNNGRNTVV 297 >gi|153007877|ref|YP_001369092.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] gi|151559765|gb|ABS13263.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] Length = 400 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 94/179 (52%), Gaps = 10/179 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHP 149 + +++++ D L+GL N F+ L +++E S++ DID FKQ ND +GH Sbjct: 212 HGDMAKVAETDELTGLPNRRHFMKRLARAELAFSEDGTAYSVMLIDIDNFKQWNDTYGHA 271 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD+ + +D V V + RLGG+EF+ EQEA +A D+ + I ++ + Sbjct: 272 LGDQALVHFADVAVDVLNRRGVLARLGGDEFSILLTKMDEQEATEIARDIVRAINDAPLA 331 Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 +G + +T+S GIA ER ++ + RAD ALY K++GRN + N C Sbjct: 332 F-NGQKLAMTVSIGIASEERDNETSDLDVFARADLALYKVKQAGRNGYATRTATVNAPC 389 >gi|332757400|gb|EGJ87736.1| hypothetical protein SF434370_1843 [Shigella flexneri 4343-70] gi|333005206|gb|EGK24726.1| hypothetical protein SFVA6_1925 [Shigella flexneri VA-6] Length = 472 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|320190029|gb|EFW64680.1| hypothetical protein ECoD_03207 [Escherichia coli O157:H7 str. EC1212] Length = 472 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|116873608|ref|YP_850389.1| GGDEF domain-containing protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742486|emb|CAK21610.1| GGDEF domain protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 357 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 117/238 (49%), Gaps = 19/238 (7%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90 + +F IA+ + + N+ L + P Y + +++LVI +I+ L+ I Sbjct: 129 WGVFVLNIIASGLVVINLHLI-LASEPNYWFNMFMFVSIALVIGAISAGLMSNMIKS--- 184 Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEKLSIVFFDIDYFKQINDNFGHP 149 K+LF Y + S L + LS + I+ + + +++++ DIDYFK IND +GH Sbjct: 185 KQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDDGSRQVTLMLIDIDYFKNINDTYGHD 244 Query: 150 VGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GD ++ QL ++ G+ F R GGEEF+ L E A +RK Sbjct: 245 AGDAIL----KQLAIILKGNTADGSEAF--RNGGEEFSIVLLDCFIDEGNYFAEKIRKET 298 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260 E I G ++ ITIS G++ S +++ AD+ALY AK +GRNR VC +D Sbjct: 299 EEYDFRIPDGQTVKITISIGVSSCTDGASTSEGLFKAADEALYKAKLTGRNR-VCVAD 355 >gi|148657915|ref|YP_001278120.1| PAS/PAC sensor-containing diguanylate cyclase [Roseiflexus sp. RS-1] gi|148570025|gb|ABQ92170.1| diguanylate cyclase with GAF sensor [Roseiflexus sp. RS-1] Length = 797 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 87/175 (49%), Gaps = 14/175 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 +LF R L+ D L+GL N F + Y ++++ D+D+FK IND Sbjct: 620 QLFTETQR---LATTDQLTGLFNRYHFFALAPRELERARRYRHDVALLIIDVDHFKTIND 676 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD V+ ++D + + R GGEEF A ++ A +A LR IE Sbjct: 677 TYGHVAGDTVLQHIADHMRRELRDADILARFGGEEFIALLPETNLTGALRVAGRLRATIE 736 Query: 205 NSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + + +G SI TIS G A E + T+I RAD+ALY AK GRN+V Sbjct: 737 ANPVPL-NGQSIRATISVGCASLHPATRDEHLDTLIQRADRALYTAKAGGRNQVA 790 >gi|4378845|gb|AAD19713.1| unknown [Zymomonas mobilis subsp. mobilis ZM4] Length = 563 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 17/175 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL + ++S+L+ D L+GLLN A ++ L ++ +SI D+D+FK+IND Sbjct: 393 ELQQANKQLSELANTDVLTGLLNRRALMAKLSELHQDALLNENAISIAMLDVDHFKKIND 452 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSEQEAAILANDLRK 201 +GH VGD V+ + + F GR GG+EF +A++ S A + N+ K Sbjct: 453 RYGHLVGDDVMRNAASIIRNNIRQEDFAGRYGGDEFIIAISASIEMSRHIAERIRNEFTK 512 Query: 202 IIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ I +G + + IT+S G+ E +E IS + +AD LY AK +GRNRV Sbjct: 513 IV------IKNGETELKITVSIGLFEITTEESISIALDKADSLLYWAKNNGRNRV 561 >gi|194436463|ref|ZP_03068564.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1] gi|253773513|ref|YP_003036344.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|256018257|ref|ZP_05432122.1| diguanylate cyclase [Shigella sp. D9] gi|297515996|ref|ZP_06934382.1| diguanylate cyclase [Escherichia coli OP50] gi|300929027|ref|ZP_07144523.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] gi|307310940|ref|ZP_07590586.1| diguanylate cyclase [Escherichia coli W] gi|332279308|ref|ZP_08391721.1| diguanylate cyclase domain-containing protein [Shigella sp. D9] gi|194424495|gb|EDX40481.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1] gi|253324557|gb|ACT29159.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300462987|gb|EFK26480.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] gi|306909118|gb|EFN39614.1| diguanylate cyclase [Escherichia coli W] gi|323378635|gb|ADX50903.1| diguanylate cyclase [Escherichia coli KO11] gi|323962294|gb|EGB57883.1| GGDEF domain-containing protein [Escherichia coli H489] gi|323973728|gb|EGB68903.1| GGDEF domain-containing protein [Escherichia coli TA007] gi|332101660|gb|EGJ05006.1| diguanylate cyclase domain-containing protein [Shigella sp. D9] Length = 472 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|329889207|ref|ZP_08267550.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] gi|328844508|gb|EGF94072.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] Length = 453 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 89/166 (53%), Gaps = 8/166 (4%) Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N A ++ + ++++ DID+FK +ND+ GH GD+V Sbjct: 287 EMAVTDPLTGLHNRRYMNGQLDALVARANRGGDPVAVLVLDIDHFKAVNDSLGHDAGDEV 346 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + S +L R GGEEF G++ ++A +A +R+ + S I G Sbjct: 347 LREFSVRLATNVRAVDLPCRFGGEEFVVVMPGTTLEDAHRIAERIRRDVGASPFRILGGE 406 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + IT+S G+A R + ++++ RAD+ +Y AKK+GRNRVV + Sbjct: 407 PLSITVSVGVAATRGADDTPASLLKRADEGVYEAKKAGRNRVVARA 452 >gi|328949133|ref|YP_004366470.1| diguanylate cyclase [Treponema succinifaciens DSM 2489] gi|328449457|gb|AEB15173.1| diguanylate cyclase [Treponema succinifaciens DSM 2489] Length = 385 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 5/142 (3%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + LS++ FDID+FK+ ND +GH GD V+ +++ + R GGEEF Sbjct: 229 QTLSVIMFDIDFFKKFNDTYGHACGDYVLKKVAEIISDSIREEDLASRYGGEEFTVLLCN 288 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIST---IIYRADQ 242 + + EA ++A +RK IE + + G ++ ITIS GI+ P+ + ++ +AD+ Sbjct: 289 AGKDEAMLVAERIRKRIEQTTV-FYEGHNMQITISGGISVFNVETNPVRSAKILVDQADK 347 Query: 243 ALYVAKKSGRNRVVCFSDIENN 264 ALYV+K++GRNRV F N Sbjct: 348 ALYVSKRTGRNRVTVFDPSSQN 369 >gi|327482223|gb|AEA85533.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 466 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 14/163 (8%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S+ D L+GL N +A + Y LSIV DID+FK+IND+FGH +GD+V+ Sbjct: 302 SQTDSLTGLANRAALDRRFATALEQARRYRRPLSIVMLDIDHFKRINDDFGHQMGDRVLR 361 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPS 215 + L VGR GGEEF +S +A A ++ E ++ ++G Sbjct: 362 DFAALLDDCLRGSDAVGRWGGEEFLILCPETSGPQAVQFAE---RLCEQARAFPFATG-- 416 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + T+SAG+AE + +++ RAD ALY AK GR+R VC+ Sbjct: 417 VSQTLSAGVAELSPSDTPDSLLRRADAALYRAKHEGRDR-VCW 458 >gi|229176090|ref|ZP_04303584.1| GGDEF domain protein [Bacillus cereus MM3] gi|228607434|gb|EEK64762.1| GGDEF domain protein [Bacillus cereus MM3] Length = 256 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 18/204 (8%) Query: 65 LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118 L++++ +V + + S++ GYI+ +L+ ELF + Q + +D L+GL N F Sbjct: 54 LIQDIRIVGLYLFSSIVTGYITFFSANYVLQSNELF---QTMKQYATVDALTGLGNVRQF 110 Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 IS+ N+ L ++ DID+FK +ND +GHP GD+V+ + L + P Sbjct: 111 DLEMNRHISNKRMKNDSLCLLLIDIDHFKHVNDTYGHPAGDEVLKQVGRILREISTFPDL 170 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 R GGEEFA + +R +E + G I IT+S GI+E + Sbjct: 171 TFRKGGEEFALLIPKREIAYGICMGEKIRTAVEKHSFQLLDGTKIKITVSVGISE--FES 228 Query: 232 PISTIIYRADQALYVAKKSGRNRV 255 + I AD ALY +K++GRN+V Sbjct: 229 SPNQFIQAADDALYYSKRNGRNQV 252 >gi|168756170|ref|ZP_02781177.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4401] gi|168761383|ref|ZP_02786390.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4501] gi|168768941|ref|ZP_02793948.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4486] gi|168774242|ref|ZP_02799249.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4196] gi|168781501|ref|ZP_02806508.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4076] gi|168788418|ref|ZP_02813425.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC869] gi|168799344|ref|ZP_02824351.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC508] gi|195937014|ref|ZP_03082396.1| hypothetical protein EscherichcoliO157_11242 [Escherichia coli O157:H7 str. EC4024] gi|208810839|ref|ZP_03252672.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4206] gi|208815485|ref|ZP_03256664.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4045] gi|209396620|ref|YP_002270521.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4115] gi|217329415|ref|ZP_03445495.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. TW14588] gi|261224516|ref|ZP_05938797.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. FRIK2000] gi|261257085|ref|ZP_05949618.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. FRIK966] gi|187770081|gb|EDU33925.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4196] gi|189000887|gb|EDU69873.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4076] gi|189356697|gb|EDU75116.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4401] gi|189361913|gb|EDU80332.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4486] gi|189368109|gb|EDU86525.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4501] gi|189371802|gb|EDU90218.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC869] gi|189378142|gb|EDU96558.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC508] gi|208724345|gb|EDZ74053.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4206] gi|208732133|gb|EDZ80821.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4045] gi|209158020|gb|ACI35453.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4115] gi|217317854|gb|EEC26282.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. TW14588] gi|320636957|gb|EFX06822.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. G5101] gi|320642311|gb|EFX11604.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H- str. 493-89] gi|320647663|gb|EFX16420.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H- str. H 2687] gi|320653296|gb|EFX21435.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663737|gb|EFX30969.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. LSU-61] gi|326340608|gb|EGD64405.1| hypothetical protein ECoA_03976 [Escherichia coli O157:H7 str. 1044] gi|326340860|gb|EGD64653.1| hypothetical protein ECF_03401 [Escherichia coli O157:H7 str. 1125] Length = 472 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|113970535|ref|YP_734328.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113885219|gb|ABI39271.1| diguanylate cyclase [Shewanella sp. MR-4] Length = 341 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 84/160 (52%), Gaps = 6/160 (3%) Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G LN AF + L E ++F DID+FK NDN+GH +GD+V+ ++ +L Sbjct: 182 DALTGCLNRRAFDADIAGMLAQAPEGTCLIFVDIDHFKAFNDNYGHQLGDQVLKAVAKRL 241 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITI 220 + R GGEEFA S + A LA +R+ +E + HIT Sbjct: 242 QEACRDGCKLYRFGGEEFAIVVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDQRIDHITA 301 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S G+A+ K+ + +I + D+ LY AK+ GRNRV+ S+ Sbjct: 302 SFGVAQWQEKQSVMQLIEKTDKLLYEAKRLGRNRVMPISN 341 >gi|330874463|gb|EGH08612.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. glycinea str. race 4] Length = 389 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 22/188 (11%) Query: 85 ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128 + G+I + IS + ++L R D L+GL N A I + + Sbjct: 197 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 256 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 S++ DID+FK +ND +GHP GD+V+ ++ L R GGEEF SS Sbjct: 257 FSLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSS 316 Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 AA LA+ +RK +E+ I N S +TIS G+A+ E +++I RAD+ALY A Sbjct: 317 LDHAAELADRIRKGVEDLLIPNTGS-----VTISLGVAQLSPGETAASLIQRADKALYQA 371 Query: 248 KKSGRNRV 255 K+ GRNRV Sbjct: 372 KRRGRNRV 379 >gi|315181990|gb|ADT88903.1| GGDEF family protein [Vibrio furnissii NCTC 11218] Length = 369 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 17/206 (8%) Query: 69 LSLVIISITISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125 ++LV++ IT++L++ Y S L +++ + ++ +L+ D L+G+ N + Sbjct: 157 INLVVVWITLALIIWYFEASRLHAYRKMNEANLKLEKLAMTDSLTGVFNRHYIERRIAHS 216 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + D+D FK +ND FGH GD V+ ++D L F VGR GGEEF Sbjct: 217 TRPFHVAMIDVDNFKLVNDQFGHVAGDGVLKGIADVLKQSFANIGIVGRWGGEEFIVLLT 276 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQ 242 S++ D+ ++ E ++ +++ P + ++IS G+A + +T + + D+ Sbjct: 277 EGSDE-------DIYRLTEQARAKVAATPFGIQVPVSISIGLAHHDLGDYEAT-LRKVDK 328 Query: 243 ALYVAKKSGRNRVVC---FSDIENNT 265 ALY AK G+NR+V + DI++ + Sbjct: 329 ALYSAKSEGKNRIVSMLQYEDIQHKS 354 >gi|254420292|ref|ZP_05034016.1| GGDEF domain protein [Brevundimonas sp. BAL3] gi|196186469|gb|EDX81445.1| GGDEF domain protein [Brevundimonas sp. BAL3] Length = 350 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 91/186 (48%), Gaps = 16/186 (8%) Query: 91 KELFISYNRISQLSR---IDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQI 142 KE+ + Q+ R D L+ L N AF L + L++ DID+FK+ Sbjct: 166 KEVARLREHLEQVRRDAMTDALTNLANRKAFDERLEQACADAGRTPLTLAILDIDHFKRF 225 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD+V+ ++S L V FV R GGEEFA G E A++A L I Sbjct: 226 NDTWGHQTGDQVLRYVSTILSRVCSGNRFVARFGGEEFAIIFPG--ESPGAVMAA-LEHI 282 Query: 203 IENSQINISSGPSIH-----ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 E S + +T+SAG AE E + ++ RAD+ALY +K+ GRNRV Sbjct: 283 REEVSSRSLRRRSTNDDLGAVTLSAGFAEHLPSEGAAALLERADEALYASKRGGRNRVTS 342 Query: 258 FSDIEN 263 +EN Sbjct: 343 ARALEN 348 >gi|90023289|ref|YP_529116.1| hypothetical protein Sde_3649 [Saccharophagus degradans 2-40] gi|89952889|gb|ABD82904.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 456 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 85/179 (47%), Gaps = 21/179 (11%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+G N + + E+ L+I+ DID+FK+IND GH VGD Sbjct: 271 KFEELSTTDSLTGAYNRFGIDRIITNLFEQRALMLPLTIIIADIDHFKRINDTEGHAVGD 330 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-------- 204 KV++ L ++ F+GR GGEEF + Q +LA LR +IE Sbjct: 331 KVLSKLGRTILANIRENDFLGRWGGEEFIIICTHTDAQHGFLLAEKLRLLIEGTQFELEN 390 Query: 205 -------NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 N Q++ P + +T S G+ E E + RAD ALY AKK GRN V Sbjct: 391 STNSPRLNQQLHPQLHPQLKVTASFGVGEVQAGETFTETFNRADSALYEAKKQGRNCTV 449 >gi|332160849|ref|YP_004297426.1| diguanylate cyclase/phosphodiesterase domain-containing protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604751|emb|CBY26249.1| hmst protein [Yersinia enterocolitica subsp. palearctica Y11] gi|325665079|gb|ADZ41723.1| diguanylate cyclase/phosphodiesterase domain-containing protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863378|emb|CBX73500.1| protein adrA [Yersinia enterocolitica W22703] Length = 300 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 14/185 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132 LLG ++ K L + + ++S D L+GL N H+ F S Y +++ Sbjct: 116 LLGLVTYRTAKRLAENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 174 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191 DID FK IND FGH VGD+ I L+++L++ VGR GG+EF A ++ EQ Sbjct: 175 LLDIDNFKSINDTFGHAVGDEAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 234 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250 +L ++ + + + P + + +SAGIA+ H + AD ALY+AK + Sbjct: 235 REVLMRIQERL---ADLVFTQAPPLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDN 291 Query: 251 GRNRV 255 GRNR+ Sbjct: 292 GRNRI 296 >gi|255523283|ref|ZP_05390253.1| diguanylate cyclase [Clostridium carboxidivorans P7] gi|296188219|ref|ZP_06856611.1| diguanylate cyclase (GGDEF) domain protein [Clostridium carboxidivorans P7] gi|255512937|gb|EET89207.1| diguanylate cyclase [Clostridium carboxidivorans P7] gi|296047345|gb|EFG86787.1| diguanylate cyclase (GGDEF) domain protein [Clostridium carboxidivorans P7] Length = 352 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 84/166 (50%), Gaps = 7/166 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 YNRI + S+ID L+GL N S F S L Y EK++I+ DID FK+ ND FGH GD Sbjct: 187 YNRIKENSQIDGLTGLYNRSYFFSIMENKLKDYREKITIIMIDIDNFKKCNDTFGHQYGD 246 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINIS 211 V+ +S + + R GGEE D +R +IE S I+ Sbjct: 247 YVLKEISKIIKENLRKDDIIARYGGEEIIVYMFDMKNVNDIYRRMDYIRSVIEKSVISYK 306 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + S ++T+S GI + II +ADQ LY AK G+NRV+ Sbjct: 307 NIES-NVTVSMGIGISNKTDTSLEKIIEKADQNLYKAKDLGKNRVI 351 >gi|167630247|ref|YP_001680746.1| ggdef domain protein, putative [Heliobacterium modesticaldum Ice1] gi|167592987|gb|ABZ84735.1| ggdef domain protein, putative [Heliobacterium modesticaldum Ice1] Length = 414 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 3/206 (1%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 G Y+L + + ++ + L + S+ +L ++ + D L+GL NH F Sbjct: 203 GPRYLLTPSKAEILQILAGQAALALKNASMYHQLKQQNEYFARQAVTDGLTGLYNHRYFQ 262 Query: 120 SSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 L ++++ FDID+FK ND +GHP GD+++ ++ L G R GG Sbjct: 263 QCLQELMKERPVTLLLFDIDHFKGFNDTYGHPCGDEILRQIAHILRSQLGPQEVAARYGG 322 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTI 236 EEFA + + A +R+ + N N ++IT+S G++E+ S + Sbjct: 323 EEFAVILPDADLRRGIERAEQIRQAVANFCFRNPDRTLCLNITVSIGVSEKLAGWDKSRL 382 Query: 237 IYRADQALYVAKKSGRNRVVCFSDIE 262 I AD+ALY AK+ GRNRV D E Sbjct: 383 IEAADRALYRAKEQGRNRVCADLDRE 408 >gi|110833577|ref|YP_692436.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2] gi|110646688|emb|CAL16164.1| GGDEF domain protein [Alcanivorax borkumensis SK2] Length = 367 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 18/232 (7%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97 F+A+ + ++L + L L++ L +IS++ ++ G I+ L++ + Sbjct: 135 FMASAAYALMLWLALLDRWVHLSLSVELLQWLVFAMISVSFAVTGGSINR--LRDALVDK 192 Query: 98 NR--------ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 NR + +++ D L+GL N + L S + ++ + D+D+FK+I Sbjct: 193 NRDLANAVKKVREMAIRDDLTGLFNRRHLLEILERQRALFSSKSVPFAVCYVDLDHFKKI 252 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GD+V+ S+ + GRLGGEEF S Q A ++A LR Sbjct: 253 NDRHGHDWGDRVLRQFSELALSGMRDGDHFGRLGGEEFLLVLPQSDAQGALLVAERLRLR 312 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + + GP+I +++S G+A E + ++ RADQ LY AK GR++ Sbjct: 313 WREQRFDAQGGPAI-VSLSVGVAAYQEGERVDELLNRADQGLYRAKAGGRDQ 363 >gi|229199536|ref|ZP_04326197.1| GGDEF domain protein [Bacillus cereus m1293] gi|228583941|gb|EEK42098.1| GGDEF domain protein [Bacillus cereus m1293] Length = 351 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 S+F + F N++ +I P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLACSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F I + N+ L ++ DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L V P V R GGEEFA +R Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLVFRKGGEEFALLIPQKGLAYGMRKGEQVRAA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|304408427|ref|ZP_07390073.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus curdlanolyticus YK9] gi|304342612|gb|EFM08460.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus curdlanolyticus YK9] Length = 525 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 10/161 (6%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ +LN + FI + +++ FDIDYFK++ND +GH GDK+I + Sbjct: 356 DGLTQILNRTQFIRLGREMLEQMRGQRMPFALMLFDIDYFKRVNDTYGHETGDKMIVHVV 415 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 GR GGEEF A + Q A LA LR +E + + G + +T Sbjct: 416 SICKERLPEDALFGRYGGEEFVLALPFVTAQGAEALAERLRAAMEYAPLLTPKG-VLTVT 474 Query: 220 ISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S GI + + E + T++ +AD+ALY +K+ GRNRV + Sbjct: 475 ASFGIVQVAGANDETLETLLSKADEALYTSKRDGRNRVSAY 515 >gi|144899220|emb|CAM76084.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 480 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 9/165 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ +D L+G N F + Y+ LS++ D+D+FK++ND++GH +GD Sbjct: 312 LRRLATMDSLTGAPNRRHFSTLAHQEMERANRYDLPLSVIMLDVDHFKKVNDSWGHAIGD 371 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ ++ + +GR+GGEEFA + AA +A LR + ++ ++ Sbjct: 372 EMLKAVTTAIQGELREVDVLGRMGGEEFALLLPQTGIDGAAQVAERLRSAVAAIRLPLAE 431 Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 G +H TIS G+ R E ++ RAD+A+Y AK++GRNRV Sbjct: 432 G-WLHATISLGVTTRLEGEAQFEHLLGRADRAMYEAKQAGRNRVA 475 >gi|71909300|ref|YP_286887.1| response regulator receiver modulated diguanylate cyclase [Dechloromonas aromatica RCB] gi|71848921|gb|AAZ48417.1| response regulator receiver modulated diguanylate cyclase [Dechloromonas aromatica RCB] Length = 543 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDY 138 I GS++K Y + + R D L+GLLNHSA L + LS+ DID Sbjct: 356 ILGSVVKTKIERYRDMLRSGRHDSLTGLLNHSASKEQLEQMLRRTLPAGHLSVAMIDIDR 415 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK INDN+GHPVGD+VI L+ L +GR GGEEF A G +A L + Sbjct: 416 FKLINDNYGHPVGDQVIRSLAWLLRGRLRNTDLIGRYGGEEFIVALNGVELGQAITLLDR 475 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +R S G ++ + S G+A ++I AD+AL AK+ GRN+++ Sbjct: 476 IRHDFSQLPHAHSRG-AVRASFSCGVASVPSYLTGGSLIEAADEALLQAKREGRNQIIA 533 >gi|58698225|ref|ZP_00373145.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225630041|ref|YP_002726832.1| response regulator PleD [Wolbachia sp. wRi] gi|58535252|gb|EAL59331.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225592022|gb|ACN95041.1| response regulator PleD [Wolbachia sp. wRi] Length = 458 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 10/167 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++S D L+ N F + L + + +LS++ DIDYFK +NDNFGH GD+ Sbjct: 291 AEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRRLSLMILDIDYFKMVNDNFGHSAGDE 350 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ + ++ + R GGEEF + +A +A +RKII ++ Sbjct: 351 LLKQIQRRISENIRVTDLLARFGGEEFVVVMPDTDTSDAYTIAERIRKIIAKKPFILADK 410 Query: 214 PSIH-ITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + H +T+S GIAE + I I RAD+ LY AK SGRNRVV Sbjct: 411 NTTHNVTVSIGIAEMQGSDLDNIKEFIVRADKYLYKAKNSGRNRVVT 457 >gi|320323008|gb|EFW79098.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320329869|gb|EFW85857.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea str. race 4] Length = 380 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 22/188 (11%) Query: 85 ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128 + G+I + IS + ++L R D L+GL N A I + + Sbjct: 188 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 247 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 S++ DID+FK +ND +GHP GD+V+ ++ L R GGEEF SS Sbjct: 248 FSLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSS 307 Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 AA LA+ +RK +E+ I N S +TIS G+A+ E +++I RAD+ALY A Sbjct: 308 LDHAAELADRIRKGVEDLLIPNTGS-----VTISLGVAQLSPGETAASLIQRADKALYQA 362 Query: 248 KKSGRNRV 255 K+ GRNRV Sbjct: 363 KRRGRNRV 370 >gi|315186905|gb|EFU20663.1| diguanylate cyclase [Spirochaeta thermophila DSM 6578] Length = 529 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ LS D L+ + N L Y S++ D+D+FK IND FGH Sbjct: 367 TRLEILSTTDPLTSIFNRRKLQEELTREYHRALRYGSPFSLILIDLDHFKTINDTFGHGK 426 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ + ++ L + VGR GGEEF + EAA++A+ L K I + Sbjct: 427 GDEVLIWTAEILRTHLRSTDIVGRWGGEEFLVLCPETRLSEAALIASKLGKEIART---- 482 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S PS +TISAG+ + + ++ AD+ LY AK SGRN V+ Sbjct: 483 SPLPSCRVTISAGVVSFSPGKSLEDLLKEADEKLYRAKGSGRNTVIV 529 >gi|309774800|ref|ZP_07669822.1| YaiC/YhcK/ArdA family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917485|gb|EFP63203.1| YaiC/YhcK/ArdA family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 367 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 92/176 (52%), Gaps = 16/176 (9%) Query: 94 FISYNRISQLS----RIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ISYN L R+D L+ L NH+AF I ++++K + DID FK I Sbjct: 187 LISYNEEQALLIERLRMDALTMLYNHNAFYRILEDAIEQGKAHDQKPVLAMLDIDNFKTI 246 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD V+ L+ + + R GGEEF S +EA L N LR+ Sbjct: 247 NDTYGHTCGDCVLRKLAAIMKEQEADNIISARYGGEEFCILFTDCSIKEAEQLMNILRQS 306 Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 EN +I+ +G +T SAG+A E P + +I AD+ALY AK++G+NRV+ Sbjct: 307 FENLKIDEINGH--QVTFSAGLAVYEEAFDSP-TAMINAADKALYEAKRNGKNRVI 359 >gi|218705006|ref|YP_002412525.1| putative membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia coli UMN026] gi|293405009|ref|ZP_06649001.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298380656|ref|ZP_06990255.1| yneF protein [Escherichia coli FVEC1302] gi|300897813|ref|ZP_07116203.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1] gi|218432103|emb|CAR12991.1| putative membrane-associated diguanylate cyclase (GGDEF domain) [Escherichia coli UMN026] gi|291427217|gb|EFF00244.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298278098|gb|EFI19612.1| yneF protein [Escherichia coli FVEC1302] gi|300358442|gb|EFJ74312.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1] Length = 472 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|88607360|ref|YP_505143.1| response regulator PleD [Anaplasma phagocytophilum HZ] gi|88598423|gb|ABD43893.1| Response regulator/GGDEF domain protein PleD [Anaplasma phagocytophilum HZ] Length = 456 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 9/163 (5%) Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++S D L+G N F ++ ++ LS++ DID+FKQ+ND+ GH VGD+ Sbjct: 292 AEMSIRDSLTGCYNRRYFEMHFQNILNESQEKDKPLSVMLLDIDHFKQVNDSLGHQVGDE 351 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ + ++ + R GGEEF + +EA ++A+ LR+II S S+G Sbjct: 352 ILQQICKRIFNSIRISDLLARYGGEEFVIIMPETCIEEATLVADRLRRIIAESPFTTSAG 411 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P ++ T+S G A E ++ RAD+ LYVAKK+ RN VV Sbjct: 412 P-LNKTLSIGAANLRSGETAEQLLTRADKLLYVAKKT-RNSVV 452 >gi|83593846|ref|YP_427598.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170] gi|83576760|gb|ABC23311.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum ATCC 11170] Length = 686 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 18/180 (10%) Query: 93 LFISYNRISQ----------LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFD 135 +F S+N ISQ L+ D L+GL N + +L S Y LS++ D Sbjct: 493 VFASFNDISQTKALERELRALAERDSLTGLANRLRVMDALRSEFDRVTRYGGALSVMMLD 552 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 +D FK +ND GH GD+ + + + T +GR GGEEF G++ A ++ Sbjct: 553 LDRFKVLNDRHGHVCGDEALRHFAASALATLRTNDLLGRSGGEEFIVLLPGAALGAAKLI 612 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 LR +++ ++ G S+ +++S G+A R + +++ RADQAL++AK +GRNR+ Sbjct: 613 GERLRAAVQDKPLSW-QGRSVALSVSIGLASRQIGDTPDSLLGRADQALHLAKANGRNRL 671 >gi|161519719|ref|YP_001583146.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia multivorans ATCC 17616] gi|189354100|ref|YP_001949727.1| putative diguanylate cyclase protein [Burkholderia multivorans ATCC 17616] gi|160343769|gb|ABX16854.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia multivorans ATCC 17616] gi|189338122|dbj|BAG47191.1| putative diguanylate cyclase protein [Burkholderia multivorans ATCC 17616] Length = 312 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 13/181 (7%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +E + ++ + + D L+G+ N F + LG Y LS++ FD+D+FK Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRYFETRLGEEFARWQRYGGDLSMLLFDLDHFKA 194 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH VGD V+ + ++ + GR GGEEFA ++ +EA +A+ +R Sbjct: 195 INDRFGHAVGDAVLRETARRVAAIVRAQDTFGRFGGEEFALLLPCTNLEEALQVADKVRD 254 Query: 202 IIENSQINISSGPSIHITISAGIAERCHK--EP-ISTIIYRADQALYVAKKSGRNRVVCF 258 I + ++ + G S+ +T S G A C K +P ++ AD ALY AK+ GR+R V + Sbjct: 255 AIGRTPVD-AEGVSVAVTASVGAA--CAKLGQPACDALVNDADAALYRAKRLGRDRSVGY 311 Query: 259 S 259 + Sbjct: 312 A 312 >gi|157373347|ref|YP_001471947.1| GGDEF domain-containing protein [Shewanella sediminis HAW-EB3] gi|157315721|gb|ABV34819.1| GGDEF domain [Shewanella sediminis HAW-EB3] Length = 396 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 19/167 (11%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL + A + + S K S+ DID+FK+ ND +GH VGD+V+ ++ ++ V Sbjct: 229 DELTGLASRRALYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLKLVAAKMARVS 288 Query: 167 GTPMFVGRLGGEEFA---------------AAALGSSEQEAAILANDLRK---IIENSQI 208 G V R GGEEF S E+ +L +D RK + + Sbjct: 289 GGGK-VFRYGGEEFTIVFPRKDTDSVIDHLEDVRESIEEYRIVLRDDKRKRSTKAKRNAA 347 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 N S+ ++ +TIS G+AER E + +AD+ALY AKK GRN++ Sbjct: 348 NKSNKKTVSVTISIGVAERLGGETFDQTLKQADEALYRAKKKGRNQI 394 >gi|330808281|ref|YP_004352743.1| sensory box GGDEF domain-containing protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376389|gb|AEA67739.1| putative sensory box GGDEF domain-containing protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 308 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 8/167 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +Q + D L+G N A +L +++ LS++ DID+FK+IND+ GH Sbjct: 140 YRAATQSALRDPLTGTGNRIAMDQTLMREIDMAKRHSQPLSVLMLDIDHFKRINDSHGHG 199 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ +++ + V R GGEEF +S AA++ LR + +Q Sbjct: 200 VGDEVLKAVAESIKSQLRNVDMVFRFGGEEFLILLANTSRDAAAMVGERLRYAAQ-TQDY 258 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++G I +T+S G A E +++ RAD ALYVAK+ GRNR+ Sbjct: 259 FAAGTRIELTVSLGCATLLPGESSESLLRRADSALYVAKREGRNRLA 305 >gi|170722309|ref|YP_001749997.1| GAF sensor-containing diguanylate cyclase [Pseudomonas putida W619] gi|169760312|gb|ACA73628.1| diguanylate cyclase with GAF sensor [Pseudomonas putida W619] Length = 345 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 8/173 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143 ++L + +R + + +D L+ L N + + +++L ++ D+D+FK IN Sbjct: 168 RDLRLEMDREQRKAMLDPLTQLWNRNGLTAFQDHERRRAAQSSQRLGAIYADLDHFKSIN 227 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD+V+ + +L V R GGEEF A + + +E +A +R++I Sbjct: 228 DRYGHASGDQVLCECARRLRAALRPDDLVVRQGGEEFVALVMVNDSEELKGIAERVRQMI 287 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +S+GP + +++S G E + + RAD LY AK++GR+RVV Sbjct: 288 GSEPVQLSTGP-LRVSLSIGCTLLNDDEHLDQALERADTGLYSAKQNGRDRVV 339 >gi|187478625|ref|YP_786649.1| signaling membrane protein [Bordetella avium 197N] gi|115423211|emb|CAJ49742.1| putative signaling membrane protein [Bordetella avium 197N] Length = 345 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 R+ +D L+GL N +F L +E +++ DID+FK IND +GH VGDK Sbjct: 179 RLRDDRDVDGLTGLWNRRSFDERLERLIARVASEPHALLLIDIDHFKSINDRYGHAVGDK 238 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 V+ +S + G+ GR+GGEEF A + + EA LA L +++ + + ++ Sbjct: 239 VLRIVSKLIQGCAGSQALTGRVGGEEF-AIVVPAGLAEAHELARRLNRLLTETLVSDLDE 297 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G IT+S G+ + +S+ + RAD LY AK+ GRNR+V Sbjct: 298 GHV--ITLSTGLTMLQLGDTVSSWMRRADTLLYQAKRDGRNRIV 339 >gi|227326895|ref|ZP_03830919.1| hypothetical protein PcarcW_06049 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 444 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 73/130 (56%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N LSI DID+FK +ND +GH GD ++ +++ L +V R GGEEF + Sbjct: 310 NTSLSIAMIDIDHFKTVNDTYGHAAGDNILKRIAEILYESTRNSDYVFRYGGEEFMIVLI 369 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 + + A + LRK I++ I++ +G S+ +TISAGIA +I AD ALY Sbjct: 370 ETPKVAAHTIIERLRKKIQDHPIHLQNGESVTMTISAGIAVYSGHPDYECLIKAADDALY 429 Query: 246 VAKKSGRNRV 255 AK +GRNR+ Sbjct: 430 QAKANGRNRI 439 >gi|153837525|ref|ZP_01990192.1| ggdef family protein [Vibrio parahaemolyticus AQ3810] gi|149749121|gb|EDM59926.1| ggdef family protein [Vibrio parahaemolyticus AQ3810] Length = 337 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LS L N AF + L + N+ ++++ DID+FK NDN+GH GD V+ ++ +L Sbjct: 181 DGLSNLYNRRAFDTDLSMLINTNQAMTLILLDIDHFKAFNDNYGHLFGDTVLKAIARRLQ 240 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221 + R GGEEFA S + A+ LR++IE ++ + SG +H IT S Sbjct: 241 QSCRDGVSAYRFGGEEFALIVPNKSLRITRQYADTLRRMIEKLRVRDKRSGTQVHSITAS 300 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE + + +++ +AD+ LY AK+ GRNRV+ Sbjct: 301 FGVAEFEVGDTVDSLVNKADKQLYEAKQLGRNRVM 335 >gi|152997837|ref|YP_001342672.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150838761|gb|ABR72737.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 452 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 10/161 (6%) Query: 102 QLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+G N + +L + S++ D+D+FK+IND GH VGD V+ Sbjct: 294 ELATRDKLTGAFNRHKWDEQIKDELALANRGHHFSLILLDVDHFKKINDAHGHDVGDNVL 353 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L + L + R+GGEEFA ++ ++A +LA LRK IE +N PS Sbjct: 354 KLLVNTLRKRLRETDMLFRIGGEEFAVLLRDTNCEDAGVLAEQLRKKIET--LNEGGMPS 411 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TIS G+ + + S I+ RAD LY AK +GRNRV+ Sbjct: 412 --FTISLGVTDYQDFDDQSRIVKRADILLYEAKGAGRNRVM 450 >gi|262371886|ref|ZP_06065165.1| diguanylate cyclase (GGDEF) domain-containing protein [Acinetobacter junii SH205] gi|262311911|gb|EEY92996.1| diguanylate cyclase (GGDEF) domain-containing protein [Acinetobacter junii SH205] Length = 301 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 12/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 +EL + + +L+R D L+ L N A L + +++ D+D+FK++N Sbjct: 130 QELEQANIELEKLARYDALTELYNRHALTDYLDYLYAQFARSHLAYAVLLMDVDFFKKVN 189 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGD V+ ++ QL FV R GGEEF +S + A LA +LR+ + Sbjct: 190 DQYGHEVGDFVLKSVAQQLSSTVRESDFVARYGGEEFVVLLPATSLEGAVALAENLRQAV 249 Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 EN+ I + P I+IS G++ + + RADQ LY AK GRNRV+ Sbjct: 250 ENAPI-LDHHP---ISISIGVSVVQAGDSDAQAAMRRADQYLYQAKAQGRNRVI 299 >gi|118581094|ref|YP_902344.1| PAS/PAC sensor-containing diguanylate cyclase [Pelobacter propionicus DSM 2379] gi|118503804|gb|ABL00287.1| diguanylate cyclase with PAS/PAC sensor [Pelobacter propionicus DSM 2379] Length = 505 Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 13/165 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + S D L+ L N ++ + L+++ DID+FK+IND FGH GD Sbjct: 329 LREASERDPLTSLYNRRKLYQLLTVELTRTRRHGHPLTLMLLDIDHFKRINDTFGHDSGD 388 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +++ + + + + R GGEEF A + AA+LA +R S I + S Sbjct: 389 LVLTQVAELISAILRSTDILARYGGEEFVIACPETDMDGAAVLAEKIR-----SSIAMFS 443 Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P++ +TIS GI+ K+ I+ +I RAD ALY AK+ GRNRVV Sbjct: 444 FPTVGAVTISVGISLLESKDDINALIKRADTALYAAKEMGRNRVV 488 >gi|312958749|ref|ZP_07773269.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas fluorescens WH6] gi|311287292|gb|EFQ65853.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas fluorescens WH6] Length = 556 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L N+ LS DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARRENKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L ++GR GGEEFA + + A + +++R ++I+ + P + Sbjct: 439 LFLKQRLRKTDYIGRYGGEEFAIVMPDTDLESACKVLDEIRGRF--AEIHYPAQPQDLWC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ E C + +AD+ALY AK +GRNRV Sbjct: 497 TFSAGLVELCDDSDSLMMAAQADEALYRAKGAGRNRV 533 >gi|301018651|ref|ZP_07182978.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] gi|300399597|gb|EFJ83135.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] Length = 472 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|238755051|ref|ZP_04616399.1| Diguanylate cyclase [Yersinia ruckeri ATCC 29473] gi|238706755|gb|EEP99124.1| Diguanylate cyclase [Yersinia ruckeri ATCC 29473] Length = 372 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 92/185 (49%), Gaps = 14/185 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132 LLG+++ K L + + ++S D L+GL N H+ F S Y S+V Sbjct: 188 LLGWVTFHTAKRLVENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYKHCSSLV 246 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191 DID FK IND +GH VGD I L+++L++ VGR GG+EF A ++ EQ Sbjct: 247 LIDIDQFKTINDTYGHTVGDDAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQA 306 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250 +L K+ E I P + + ISAG+AE + + D ALY AK + Sbjct: 307 REVLTRIQGKLAE---IEFKQSPGLQLKISAGVAEFKPEMANYQQWLKAVDSALYHAKNN 363 Query: 251 GRNRV 255 GR+R+ Sbjct: 364 GRDRI 368 >gi|78060867|ref|YP_370775.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. 383] gi|77968752|gb|ABB10131.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383] Length = 312 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 95/181 (52%), Gaps = 13/181 (7%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +E + ++ + + D L+G+ N F + LG Y +S++ FD+D+FK Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFSRWQRYGGDMSVLLFDLDHFKT 194 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH GD V+ + ++ + GR GGEEFA ++ EA ++A+ +R Sbjct: 195 INDRFGHAAGDAVLRETARRVAAIVRAQDTFGRFGGEEFALLLPCTNLDEAMLVADKVRD 254 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258 I + ++ + G S+ +T S G A C K T ++ AD ALY AK+ GR+R V + Sbjct: 255 AIGSMPVD-AEGVSVPVTASVGGA--CAKTGAPTCDVLVNEADAALYRAKRLGRDRSVAY 311 Query: 259 S 259 S Sbjct: 312 S 312 >gi|73538689|ref|YP_299056.1| GGDEF [Ralstonia eutropha JMP134] gi|72122026|gb|AAZ64212.1| GGDEF [Ralstonia eutropha JMP134] Length = 532 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 15/171 (8%) Query: 101 SQLSR------IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 QLSR ID L+G+ N F +S E++ ++ D+D FKQ ND +G Sbjct: 348 EQLSRVQADLDIDALTGIPNRRYFQREAMLAVSRAFERREEMGLLILDVDLFKQYNDLYG 407 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 HP GD+ + ++ L + F RLGGEEFA S+++E +A + + + Sbjct: 408 HPRGDECLRQVAAALTRMLAGTQFCARLGGEEFAVVLPASTQEETRTVARAMVEAVRELG 467 Query: 208 INISSGPSIHI-TISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 I P I TIS G P + +++RAD A+Y AK++GRNR V Sbjct: 468 IPHHGTPVQPIVTISVGAVCAAPDAPRLEPLLHRADSAMYQAKRAGRNRFV 518 >gi|326794922|ref|YP_004312742.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326545686|gb|ADZ90906.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 384 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 70/200 (35%), Positives = 104/200 (52%), Gaps = 19/200 (9%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISS 121 +SL++++I + +LL ++ FI NR + D LSGLLN + +++ Sbjct: 195 VSLMLLAINVLVLL------LVSRKFI--NRFHFCAIKDELSGLLNRRYLNEISAKVMAN 246 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + N +S++FFDID FK IND +GH GD V++ L + R GGEEF Sbjct: 247 AQTNNRSISLLFFDIDLFKSINDKYGHHAGDLVLSQLGSIVKEFTRMNDLSFRYGGEEFV 306 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYR 239 G EA ANDLR+ IE S ++ I +T+S G+A E I +I+R Sbjct: 307 LIYEGDV-HEAERFANDLRQYIEKSAFDLGIA-QIQLTVSIGVATNQSHETHSIKDLIFR 364 Query: 240 ADQALYVAKKSGRNRVVCFS 259 AD A+Y AK +GRN + +S Sbjct: 365 ADAAMYQAKAAGRNCIRVYS 384 >gi|221134190|ref|ZP_03560495.1| response regulator receiver modulated diguanylate cyclase [Glaciecola sp. HTCC2999] Length = 323 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 9/169 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148 YN++ + S D L+G+ N F L ++ + I +FD+D+FK IND GH Sbjct: 141 QYNQLQKESLTDVLTGISNRRHFKDILKKEMVKAQRHDRAMCIAYFDLDHFKAINDGLGH 200 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ +S + GRLGGEEF +S EA I + R +IE I Sbjct: 201 DAGDEVLRKVSSAISETLRAEDSFGRLGGEEFCICMPDTSLNEALIPSERYRLMIEKLTI 260 Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ P I++T S G+ E + I++++ AD+ALY +K GRN+V Sbjct: 261 EYNNKP-INVTASFGVTEFKPFLHDINSLLAHADEALYKSKHQGRNQVT 308 >gi|86609720|ref|YP_478482.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558262|gb|ABD03219.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 364 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 89/179 (49%), Gaps = 15/179 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK----LSIVFFDIDYF 139 ++L + LS D L+G LN A +L G E L ++ D+D+F Sbjct: 171 RQLRARNELLESLSLTDPLTGALNRRALDQALPHLLKQVGPRGEARYRYLCLLMMDVDHF 230 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 KQ+ND++GH +GD V+ + +L + R GGEEF G S A L Sbjct: 231 KQVNDSYGHYIGDCVLQAIVGRLQNQLRPSSLLYRYGGEEFVCVTPGLSPPRCGRYAESL 290 Query: 200 RKIIENSQINISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R+ I I+IS S+ +TIS G ++E EP T + +AD ALY AK++GRNRV Sbjct: 291 RQAIAKRPIDISPKRSLPVTISIGGIVLSEDYCPEP-ETALQQADSALYQAKQAGRNRV 348 >gi|302343938|ref|YP_003808467.1| 7TM domain sensor diguanylate cyclase [Desulfarculus baarsii DSM 2075] gi|301640551|gb|ADK85873.1| 7TM domain sensor diguanylate cyclase [Desulfarculus baarsii DSM 2075] Length = 576 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 17/216 (7%) Query: 58 FYGLEY-------ILVENLSLVIISITISLLLG-YISG-SILKELFISYNR-ISQLSRID 107 YGL Y + L S+ +SL L I G + +E + R ++ + D Sbjct: 358 LYGLGYLPSSMLTVHAAGLGAAAESVLLSLALADRIRGLRVDREALLERQRGLAHQAVTD 417 Query: 108 CLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+GL N + L + LS+ FD+D+FK+ ND+FGHP GD+V+A + Sbjct: 418 ELTGLYNKRYLLGDLKESVKRAAQGGQPLSVALFDVDHFKRFNDSFGHPKGDEVLAAMGH 477 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 + R GGEEF + +A +A +R I + + + +T+ Sbjct: 478 DIRGCVRDGDKGCRYGGEEFVVILPMAGLDQALAVAERVRGAIARRRFAVDADQWASVTV 537 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SAG+A E + ++ RAD+ALYVAK++GR+R V Sbjct: 538 SAGVACLRAGENAAELLDRADKALYVAKRAGRDRTV 573 >gi|121998088|ref|YP_001002875.1| diguanylate cyclase [Halorhodospira halophila SL1] gi|121589493|gb|ABM62073.1| diguanylate cyclase [Halorhodospira halophila SL1] Length = 559 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 19/171 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q ++ D L+GLLN S + + + L+++ D+D+FK++ND GH VGD Sbjct: 395 LDQQAQHDRLTGLLNRSGLDQQIATQVAQHQETGKPLAMLLIDLDHFKRVNDEHGHAVGD 454 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQI 208 K++ L+DQL VGR GGEEF A L ++Q A+ LR+ + + + Sbjct: 455 KILRHLADQLRAGVREADIVGRWGGEEFVILLPATGLDGAQQS----ADKLRRALADHPV 510 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G +T S G++ ++ + RAD ALY AK GRNRV S Sbjct: 511 LRQHG----LTASFGVSVLASEDSDRDLFERADCALYAAKHQGRNRVSIVS 557 >gi|323494656|ref|ZP_08099759.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] gi|323311089|gb|EGA64250.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] Length = 338 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 90/162 (55%), Gaps = 5/162 (3%) Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + Q + D L+ L N AF I++L +K+ +V DID+FK ND +GH GD VI Sbjct: 175 VQQDALFDSLTSLYNRRAFDGDINTLCRSEQKMCLVLADIDHFKTFNDTYGHLFGDTVIK 234 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPS 215 ++ +L + + R GGEEFA S + A A +R+ +E S + +G S Sbjct: 235 GIARRLQLSCRDGIHAYRFGGEEFALIVPNKSLRIARQFAESIRRTVEKLSVKDRRTGQS 294 Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +ITIS G+AE E ++I RAD+ LY AK+ GRNRV+ Sbjct: 295 IGNITISLGVAELEPGESPESLIERADKLLYEAKQLGRNRVM 336 >gi|91777509|ref|YP_552717.1| diguanylate cyclase [Burkholderia xenovorans LB400] gi|91690169|gb|ABE33367.1| periplasmic sensor diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 591 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 18/183 (9%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139 G +++EL + + D L+ LLN AF S + +L+++ FDID+F Sbjct: 409 GRLIQELKAT-------AETDFLTHLLNRRAFESRARLSCAERNAAEPELALIMFDIDHF 461 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND +GH GD + ++ V R GGEEFA + +A +A L Sbjct: 462 KKINDTYGHATGDHALQLVARLCRETCRQADVVARWGGEEFAVLSRVQDAAQALAVAERL 521 Query: 200 RKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 R I ++I +S G +IT S G+ A C + + RAD+ LY AK++GR+R+ Sbjct: 522 RCRIRETRIPVSGGDGFNITASFGVAFASACDSRDVDRLFRRADRLLYQAKEAGRDRI-- 579 Query: 258 FSD 260 F+D Sbjct: 580 FAD 582 >gi|150396149|ref|YP_001326616.1| response regulator PleD [Sinorhizobium medicae WSM419] gi|150027664|gb|ABR59781.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium medicae WSM419] Length = 455 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 9/177 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 L S + +L+ D L+GL N I G+ LSI DID FK++ND Sbjct: 278 RLRASVQQTIELAVTDDLTGLHNRRYLENHLKLLIDRAGARGRPLSICITDIDRFKRVND 337 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD V+ ++++ R GGEEF ++ + AAI+A LR +E Sbjct: 338 TYGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVAERLRLSVE 397 Query: 205 NSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +I+ ++ +T S GIA R + ++ RAD ALY AK GRNRVV + Sbjct: 398 SRGFDIAEAATVLTVTASLGIASLRPDGDTAEALLKRADMALYEAKNGGRNRVVAAA 454 >gi|94268695|ref|ZP_01291258.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|94270596|ref|ZP_01291777.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93450745|gb|EAT01809.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93451500|gb|EAT02327.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] Length = 469 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 101/220 (45%), Gaps = 19/220 (8%) Query: 46 ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE--LFISYNRISQL 103 IF +++ TPF G +L ++ IT I+ +L E L S R +L Sbjct: 258 GEIFHYHVLATPFKGP----AGDLLGIVEHITD------ITSRVLAEQALQKSEQRYKEL 307 Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S +D L+GL N F + Y LS++ DID FK ND +GHP GD+V++ Sbjct: 308 SIVDELTGLFNKRYFNKHLRLEVERARRYQHPLSLLIMDIDNFKHYNDTYGHPAGDRVLS 367 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L L R GGEEF + + LA LR+ + G I Sbjct: 368 ALGGMLRDSMRLNDLACRFGGEEFVVILPMTDGETGLKLAERLRERFAALEFQPLEGVVI 427 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G+A+ +E +++ RAD+ LY AK +GR+R + Sbjct: 428 RKTMSVGVAQFEDEESPESLLARADKNLYAAKAAGRDRSI 467 >gi|85710903|ref|ZP_01041964.1| putative two-component hybrid sensor and regulator [Idiomarina baltica OS145] gi|85695307|gb|EAQ33244.1| putative two-component hybrid sensor and regulator [Idiomarina baltica OS145] Length = 548 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 60/157 (38%), Positives = 80/157 (50%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N F +L + Y E L+IV FDID+FK+INDNFGH GD+V+ L Sbjct: 392 DPLTGAYNRRFFTEALETLVYRSERYEESLAIVTFDIDHFKRINDNFGHEAGDRVLIELV 451 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + R GGEEF+ + Q+A A R +E I S G I +T Sbjct: 452 QTLGRLVRESDIFARTGGEEFSLLLPNQTLQQATRTAERFRAALEALVIR-SEGHEIQVT 510 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+A + + ++ AD+ALY AK GRN VV Sbjct: 511 ASFGVAIHHNGATHNEVLRHADKALYAAKSRGRNCVV 547 >gi|307317852|ref|ZP_07597290.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium meliloti AK83] gi|306896614|gb|EFN27362.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium meliloti AK83] Length = 455 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 9/177 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 L S + +L+ D L+GL N I + LSI DID FK++ND Sbjct: 278 RLRASVQQTIELAVTDDLTGLHNRRYLENHLKLLIDRATTRGRPLSICITDIDRFKRVND 337 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD V+ ++++ R GGEEF ++ + AAI+A LR +E Sbjct: 338 THGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVAERLRLAVE 397 Query: 205 NSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +I ++ ++T S GIA R H + ++ RAD ALY AK GRNRVV + Sbjct: 398 SRGFDIPQAATVLNVTASLGIATLRPHGDTAEALLKRADMALYQAKNGGRNRVVAAA 454 >gi|289435260|ref|YP_003465132.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171504|emb|CBH28048.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 378 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 + Q + +D L+GL N F S L+++ DIDYFK++ND +GH VG Sbjct: 204 ELQQSTILDPLTGLSNFRHFEQMFDSAFQYAAMKKANLNLIIIDIDYFKRVNDTYGHLVG 263 Query: 152 DKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + V++ S L+ + F + R+GGEEFA S E LA +RK +E + I Sbjct: 264 NSVLSTFSQMLLKISFPPNTVIARIGGEEFAIILPNISASETEHLAEKIRKKVEKIEFPI 323 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA ++ ++ ADQALY AK++GRN+V Sbjct: 324 VATGSV-ITISAGIANYNGSNYLTPEALLQAADQALYNAKRNGRNQV 369 >gi|241113039|ref|YP_002972874.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861247|gb|ACS58913.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 405 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 20/197 (10%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL------SI 131 + LL S L EL + +++ L+R D L+G+ N + + +L ++E L ++ Sbjct: 205 TFLLELRDRSRLAELTDANSQLELLARTDPLTGVANRRSMMETLHYFWSEDLKRTSGAAM 264 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF-----VGRLGGEEFAAAALG 186 + DID FK +NDN GH GD+ + ++ + + M V R GGEEF G Sbjct: 265 LMCDIDDFKHLNDNLGHAEGDRCLV----KVAGIIQSSMRDERDQVARYGGEEFLVFLPG 320 Query: 187 SSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIST---IIYRADQ 242 S EQEA ++A +R +E + + N +S ++T+S G+A + + + +AD Sbjct: 321 SDEQEAKVVAERIRSRVEAASLPNPTSRVVAYVTVSIGVATMMQDSELVSAEHMQRQADA 380 Query: 243 ALYVAKKSGRNRVVCFS 259 ALY+AKK+GRNRVV + Sbjct: 381 ALYLAKKTGRNRVVVHA 397 >gi|294140132|ref|YP_003556110.1| GGDEF domain-containing protein [Shewanella violacea DSS12] gi|293326601|dbj|BAJ01332.1| GGDEF domain protein [Shewanella violacea DSS12] Length = 407 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 11/175 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 + + + L++ D L+G+ N ++FI + S E S++ FD+D+FK+IND Sbjct: 216 MAMQKRKYKMLAQHDALTGIFNRGTAQNIAENSFIKA-ASKREMFSVIMFDLDFFKRIND 274 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH GD V+ ++D + + R GGEEFA + E +A +A + R+IIE Sbjct: 275 NYGHGTGDWVLKKVADMINKASRSDDIFARFGGEEFALFLPDTDEAKANAMAEEYRRIIE 334 Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 + + SG S IT S G+ + + +++RAD A+Y +K+ GRN V + Sbjct: 335 SIETKF-SGHSFAITASFGVTSSGEDDLSLDPLLHRADIAMYHSKELGRNCVTAY 388 >gi|320195540|gb|EFW70165.1| hypothetical protein EcoM_01965 [Escherichia coli WV_060327] Length = 472 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK I+DN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSISDNYGHECGDKVLSVFAQHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 G+ C + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGCASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|239995359|ref|ZP_04715883.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126] Length = 627 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 12/165 (7%) Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ +D L+G+ N + + ++ SY LS+V D+D FK+INDN+GH GD ++ Sbjct: 464 LATVDTLTGVRNRRSLLGAVQLELNEAKSYKNDLSLVLIDLDNFKEINDNYGHECGDDLL 523 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + GR GGEEF +S EA + N I +S + P+ Sbjct: 524 KAFCEHVSKCIRKTDTFGRYGGEEFILCLPKTSAAEAKKVVNS----ILDSYRKVRISPN 579 Query: 216 IHI-TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I T SAGIA+ S +I + D+ALYVAK+ GRNRV FS Sbjct: 580 ISAQTFSAGIAQYQTGIETSNLIKQCDEALYVAKRFGRNRVCIFS 624 >gi|167034562|ref|YP_001669793.1| diguanylate cyclase [Pseudomonas putida GB-1] gi|166861050|gb|ABY99457.1| diguanylate cyclase [Pseudomonas putida GB-1] Length = 460 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 13/169 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISS----LGSYNE-----KLSIVFFDIDYFKQINDNFGHP 149 R+++ + ID L+G+L SAF L S + L+++ DID+FK +ND GH Sbjct: 283 RLARQATIDHLTGVLTRSAFTRRANALLDSRQQHAQALPLTLMMLDIDHFKSVNDAHGHA 342 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ + L RLGGEEFA G + + A A LR+ +++ + Sbjct: 343 VGDQVLRQFAGTLQDQLHNDELFARLGGEEFAVIIPGLAPERAKFTAERLRRAVQDLHV- 401 Query: 210 ISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255 + + + IT+S G+A P + ++ ADQALY AK GRNRV Sbjct: 402 MQADQRLQITVSIGLAGCDADMPAPSLDELLASADQALYRAKAHGRNRV 450 >gi|119469343|ref|ZP_01612282.1| hypothetical protein ATW7_07819 [Alteromonadales bacterium TW-7] gi|119447207|gb|EAW28476.1| hypothetical protein ATW7_07819 [Alteromonadales bacterium TW-7] Length = 387 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 18/208 (8%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 LE IL +L L S +LLL Y+ S + + ++ ++ D LS L N F Sbjct: 183 LELILSSHLILATCS---ALLLPYLLASNTE------HTLASIANTDVLSQLFNRRGFFM 233 Query: 121 ------SLGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 SL Y N+ +S++ DID+FK++ND +GH GD+ I +++ + F Sbjct: 234 KGKNALSLSLYQNKNISLILLDIDFFKRVNDTYGHEAGDQAIKWIAQHIKSQFLNEEISA 293 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232 R+GGEEFA S +A A +LR+ I G I++++SAG++ + E Sbjct: 294 RIGGEEFAILLPNCSLSDARNNAEELRESISCYPF-YYEGHDINLSVSAGVSSTLNGEQT 352 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260 I ++ AD+ LY+AK++GR++VV + + Sbjct: 353 IKELLANADKRLYLAKETGRDKVVTYDE 380 >gi|330000912|ref|ZP_08303856.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] gi|328537844|gb|EGF64036.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] Length = 559 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 17/203 (8%) Query: 69 LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120 L+L+ + T+ LLL ++ +++ + + + + D L+ LLN A S Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 L+++ D+D+FK IND +GH GD+V++ ++ L +GR+GGEEF Sbjct: 417 DCQRSGRPLAVIQLDLDHFKHINDRYGHQAGDRVLSMVASTLSSAVRQGDLLGRVGGEEF 476 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPIST 235 ++ QEAA +A LR+ I+ ++ + + ++ ++ S G++ + E + + Sbjct: 477 CIVMPNTTLQEAAAVAERLRQRIQGREVFLHNNVTLRVSASLGVSASEERGEYQFEALQS 536 Query: 236 IIYRADQALYVAKKSGRNRVVCF 258 + AD LY+AK++GRN+ VCF Sbjct: 537 V---ADGRLYLAKQNGRNQ-VCF 555 >gi|308071307|ref|YP_003872912.1| GGDEF domain protein [Paenibacillus polymyxa E681] gi|305860586|gb|ADM72374.1| GGDEF domain protein [Paenibacillus polymyxa E681] Length = 358 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 18/202 (8%) Query: 67 ENLSLVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118 +N S++II+ T LL G Y S +K+ + + + + + D L+GL + AF Sbjct: 157 DNESMIIIT-TFKLLGGLFTYFMVSHIKKTERAVHLLEEAANRDHLTGLYSPRAFDVLFE 215 Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 + + + +V DID+FK IND +GH GD V++ L L T + R G Sbjct: 216 EVFHTSKTTKQPFGLVMLDIDHFKNINDTYGHLNGDTVLSQLGMLLTRESTTRAYPSRKG 275 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--- 233 GEEFA Q+ A A +RK +EN + ++ G SI +T+S G P+ Sbjct: 276 GEEFAILIGNCDSQKVASFAEKIRKAVENERFLLNDGASIPLTVSIGAGS----SPVIAS 331 Query: 234 STIIYRADQALYVAKKSGRNRV 255 ++ ++D+ALY AK+SGRN+V Sbjct: 332 RHLLEKSDEALYEAKRSGRNQV 353 >gi|241206372|ref|YP_002977468.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860262|gb|ACS57929.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 385 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 7/169 (4%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKV 154 S N++++L+ D L+G LN L + + +S++ DID+FKQ+ND GH GD + Sbjct: 215 SRNQLTELAHHDPLTGALNRGGLAQHLPALGFQPVSLLIIDIDHFKQLNDRHGHAAGDDI 274 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + + + + R GG+EF A +S Q+A I+A +R + + P Sbjct: 275 LRLFASVSRSIMRSDDLLARQGGDEFLAVLKNASRQDAVIIAERIRLAFAAAVLQ---RP 331 Query: 215 SIHI--TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I T+S G+A R ++ +AD+ALY +K+ GRNRV FS+ Sbjct: 332 DLAIFPTLSIGVAARAESGGDFERLMQKADEALYRSKREGRNRVEAFSE 380 >gi|15965047|ref|NP_385400.1| response regulator PleD [Sinorhizobium meliloti 1021] gi|307301119|ref|ZP_07580888.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium meliloti BL225C] gi|15074226|emb|CAC45873.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Sinorhizobium meliloti 1021] gi|306904074|gb|EFN34660.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium meliloti BL225C] Length = 455 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 9/177 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 L S + +L+ D L+GL N I + LSI DID FK++ND Sbjct: 278 RLRASVQQTIELAVTDDLTGLHNRRYLENHLKLLIDRATTRGRPLSICITDIDRFKRVND 337 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD V+ ++++ R GGEEF ++ + AAI+A LR +E Sbjct: 338 THGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVAERLRLAVE 397 Query: 205 NSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +I ++ ++T S GIA R H + ++ RAD ALY AK GRNRVV + Sbjct: 398 SRGFDIPQAATVLNVTASLGIATLRPHGDTAEALLKRADMALYQAKNGGRNRVVAAA 454 >gi|114567601|ref|YP_754755.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338536|gb|ABI69384.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 459 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 89/176 (50%), Gaps = 16/176 (9%) Query: 90 LKELFISYNRISQLSRI-DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141 L+EL NRI Q+ I D L+GL NH + L Y ++L+I+ DID+FK Sbjct: 292 LREL----NRILQVQAITDSLTGLYNHRQVLEKLQLEIARANRYQQELTIMMLDIDHFKS 347 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH VGD V+ ++ + GR GGEEF ++ + +R+ Sbjct: 348 INDEFGHQVGDVVLVEVAQIIKRNLRNIDIAGRYGGEEFLIILPQTNLNNGRQVGERIRR 407 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +E I IT+S GI++ +E + I RADQ LY AK+ GRNR+ C Sbjct: 408 QVE---IEGFEDSKEGITVSIGISQHQGEEMVD-YIERADQLLYRAKRKGRNRIEC 459 >gi|330722115|gb|EGH00025.1| Signaling protein with a periplasmic binding domain and GGDEF domain [gamma proteobacterium IMCC2047] Length = 318 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 13/183 (7%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145 L S +I ++ DC++GL N + F L Y+ + +++F D+D FK+IND Sbjct: 129 LVASERQIRDMAFTDCVTGLANRNLFTDRLDQMILDSKRYHHEFALLFIDLDGFKKINDT 188 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKII 203 +GH VGDK++A +++ F V R GG+EF G + A + L+++ Sbjct: 189 YGHLVGDKLLAMTGERISASFRDSDIVARFGGDEFLVIVKNTGDVKAIAQVCGKLLKRLA 248 Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 E I+ +T S GIA CH S +I AD+A+Y AK++GRN V S+ + Sbjct: 249 EPHYID---DLEFTVTASIGIAHYPCHATSSSRLIQMADKAMYKAKRAGRNCFVICSEEQ 305 Query: 263 NNT 265 + T Sbjct: 306 SET 308 >gi|261251533|ref|ZP_05944107.1| hypothetical protein VIA_001554 [Vibrio orientalis CIP 102891] gi|260938406|gb|EEX94394.1| hypothetical protein VIA_001554 [Vibrio orientalis CIP 102891] Length = 608 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 5/158 (3%) Query: 102 QLSRIDCLSGLLNHSA-FISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 QLS D L+GL N F ++ KLS + DID+FK +ND +GH GD+V+ +S Sbjct: 450 QLSNTDFLTGLSNRRHIFEWGEAQFDRLKLSSIMLDIDHFKTLNDTYGHDFGDEVLKTVS 509 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + VGR+GGEEF S + + LA D+R+ I + I +T Sbjct: 510 SIVTKAARSADVVGRIGGEEFLILLPNVSRHQLSHLAEDIRQKIAQHRFTTPDHKEIQVT 569 Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 S GI E H+ +S + AD ALY AK+SGRNR V Sbjct: 570 ASFGITE--HRSGSLSNQVNLADTALYNAKRSGRNRSV 605 >gi|170692779|ref|ZP_02883941.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M] gi|170142435|gb|EDT10601.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M] Length = 777 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 17/239 (7%) Query: 36 SIFIATVIFIANIFLFY---IGLTP--FYGLEYILVENLSLVIISITISLLLGYISGSIL 90 +++ F+ LFY IGL P + + +V + + I + +++ + Sbjct: 126 PLWLTPTHFVVGSALFYAAAIGLLPSAPHTADVDVVVWMWIAAIGMPTAVVFHFGFYGFR 185 Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQIND 144 + F+ ++++QL+ D L+GL N AF++ +L S +F DID FK +ND Sbjct: 186 RNHFLLEDQLAQLAATDPLTGLQNRRAFVAQAERRLAELARGGEASAIFLDIDNFKSLND 245 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH VGD + ++ L+ V R+GGEEFA + A LA LR I Sbjct: 246 RFGHAVGDLALRQVAQVLLEQTTRGDSVSRIGGEEFAVLSC-DGLAGALRLAERLRGAIA 304 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + P H+T S G+AE E I ++ RAD+AL AK+SGRNRV + + Sbjct: 305 ALER-----PDGHLTASFGVAEHRGDENIMVLLDRADEALLRAKQSGRNRVCAERPVPD 358 >gi|154685373|ref|YP_001420534.1| YhcK [Bacillus amyloliquefaciens FZB42] gi|154351224|gb|ABS73303.1| YhcK [Bacillus amyloliquefaciens FZB42] Length = 359 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAF--ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+G+ N F +S + S + +L++++ DID+FKQIND +GH GD+V+ L Sbjct: 195 DFLTGIFNKRKFEEVSRVLYDRASQSPSSQLALIYLDIDHFKQINDQYGHYEGDQVLKEL 254 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +L ++ + R+GGEEFA + + LA ++R I+ + I ++SG +I + Sbjct: 255 GARLRLLLSSSDPSARIGGEEFAVLMPNCTYTKGLHLAEEIRHTIDANPILLTSGDTIPV 314 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S GIA + T+ AD+ LY AK SGRN+V Sbjct: 315 TVSLGIAHYPTNTSDPQTLPLIADRMLYKAKTSGRNQV 352 >gi|120555850|ref|YP_960201.1| sensor diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120325699|gb|ABM20014.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 571 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 119/244 (48%), Gaps = 17/244 (6%) Query: 25 HTFMIYFSIFFSIFIATVIFIANIFLFYIGLT-PFYGLEYILVENLSLVIISITISLLLG 83 H + +F + + F V+F L+Y GL P Y + + + +V+ ++T++ ++ Sbjct: 325 HPLVKFFLVGHTFF---VVFNGFAVLYYKGLVQPNYINSHGV--GIGIVLEALTLAFIIS 379 Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFD 135 Y +L+++ + + + + D L+ L N F++ G Y E LS++ D Sbjct: 380 Y-RIKVLEDIRSKQDELKRQASTDPLTRLFNRRYFMAE-GEYVLEQARTSGEPLSVIAID 437 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK +ND GH VGD V+ ++ V R GGEEF G+ E Sbjct: 438 IDHFKAVNDTHGHNVGDLVLVEVASVFRQFSRDRDLVARFGGEEFVILLPGADLTEGFGC 497 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254 A +R +E I+ G ++ +T+S G+AE E + + RAD++LY AK GRNR Sbjct: 498 AERIRNAVEAMVIDGGDGLAVRVTVSVGVAEVNPLLESVEGAVKRADRSLYEAKAGGRNR 557 Query: 255 VVCF 258 V F Sbjct: 558 VCGF 561 >gi|134292515|ref|YP_001116251.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis G4] gi|134135672|gb|ABO56786.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis G4] Length = 313 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 15/182 (8%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +E + ++ + + +D L+G+ N F + LG Y LS++ FD+D+FK Sbjct: 136 MQREREEAVAKLREHANVDGLTGIANRRYFEARLGDEFARWQRYGGDLSVLLFDLDHFKT 195 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH VGD V+ + ++ + GR GGEEFA ++ EA ++A+ +R Sbjct: 196 INDRFGHAVGDAVLRETARRVASIVRAQDTFGRFGGEEFALLLPCTNLDEALLVADKVRD 255 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVC 257 I ++ + + G S+ +T S G A + P ++ AD ALY AK+ GR+R V Sbjct: 256 AIGSTPVE-AEGVSVAVTASVGAA---YATPGLASCDVLVNGADTALYRAKRLGRDRSVA 311 Query: 258 FS 259 F Sbjct: 312 FG 313 >gi|16077977|ref|NP_388793.1| diguanylate cyclase or phosphodiesterase [Bacillus subtilis subsp. subtilis str. 168] gi|221308751|ref|ZP_03590598.1| hypothetical protein Bsubs1_05043 [Bacillus subtilis subsp. subtilis str. 168] gi|221313073|ref|ZP_03594878.1| hypothetical protein BsubsN3_04984 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317999|ref|ZP_03599293.1| hypothetical protein BsubsJ_04928 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322273|ref|ZP_03603567.1| hypothetical protein BsubsS_05029 [Bacillus subtilis subsp. subtilis str. SMY] gi|1724005|sp|P54595|YHCK_BACSU RecName: Full=Uncharacterized protein yhcK gi|1239987|emb|CAA65695.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633235|emb|CAB12740.1| putative diguanylate cyclase or phosphodiesterase [Bacillus subtilis subsp. subtilis str. 168] Length = 359 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 12/167 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGS-YNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155 + D L+G+ N F + + Y + + ++++ DID+FK IND +GH GD+V+ Sbjct: 192 AHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQYGHHEGDQVL 251 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L +L R+GGEEFA S +AA +A +R + ++ I +++G Sbjct: 252 KELGLRLKQTIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRSTVSDAPIVLTNGDE 311 Query: 216 IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +TIS G A + ++P S I ADQ LY AK++GRNR VCFS+ Sbjct: 312 LSVTISLGAAHYPNNTEQPGSLPIL-ADQMLYKAKETGRNR-VCFSE 356 >gi|224369189|ref|YP_002603353.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223691906|gb|ACN15189.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 305 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 7/175 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 +++ +L+ D L+GL N F L + Y+ LS++ DID FK ND +GH Sbjct: 131 DKLEELAITDGLTGLYNSRHFFCQLKAEIERYTRYHHPLSVLLLDIDLFKNYNDTWGHLE 190 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDKV+ + + + + R GGEEF + +EA ++ +R I+ Sbjct: 191 GDKVLMTMGEIITSCLRSNDTAYRYGGEEFTVVLPETRVEEACLVGERIRGILSQRVFTP 250 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + +TIS G + + + + I RAD+A+Y +KK+GR+++ C E T Sbjct: 251 EKEKTAKVTISIGATQFSTSDTLESFIKRADKAMYDSKKAGRDQLTCLPAPETKT 305 >gi|307720558|ref|YP_003891698.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294] gi|306978651|gb|ADN08686.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294] Length = 423 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 88/181 (48%), Gaps = 17/181 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 +G + E ++ +L+ D L+G+ N I Y E S++ DID Sbjct: 248 TGRDITERIALEKQLKKLATKDTLTGIYNRYKINTIIEDEIKRAKRYGEIFSLIMLDIDN 307 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV---GRLGGEEFAAAALGSSEQEAAIL 195 FK++ND +GH GD V+ +S VV GT GR GGEEF A +++ EA L Sbjct: 308 FKKVNDTYGHDTGDYVLQEIS---RVVLGTIRKTDSFGRWGGEEFILVAPHTNKDEALEL 364 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 A +RK IE IT+S G+ + E +T+I R D ALY AK +GRN+V Sbjct: 365 AQKIRKNIEKHLFEYVK----QITVSIGVTQYTTNEESTTLIKRVDNALYEAKANGRNQV 420 Query: 256 V 256 Sbjct: 421 A 421 >gi|242281165|ref|YP_002993294.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242124059|gb|ACS81755.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 490 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 10/172 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 I +N+I + D L+ + N +F L N +LS++ D+DYFK +ND +G Sbjct: 310 IMFNKIKTRANRDGLTRVYNRRSFDERLVEEFKRHQRLNTELSLLMVDLDYFKAVNDTYG 369 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V+ ++ F + F+ R GGEEF + E +A +LA +R IE+ Sbjct: 370 HMAGDMVLEKVARMFEKTFRSTDFIARYGGEEFVILLPHTREDQAEMLAERIRAKIESCA 429 Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + S +IT S G++ E + I+ +AD+ALY AK GRNRVV Sbjct: 430 MTYQD-KSFNITASIGVSSVRPGSLEKDTEIVRKADEALYDAKMQGRNRVVV 480 >gi|46199580|ref|YP_005247.1| diguanylate cyclase/phosphodiesterase [Thermus thermophilus HB27] gi|46197206|gb|AAS81620.1| diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) [Thermus thermophilus HB27] Length = 360 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 11/156 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L Y LS+V D+D FK +ND GH VGD+V+ L+ Sbjct: 204 DFLTGLRNRRYLELILERELFRLQRYGRPLSLVLLDLDGFKAVNDLHGHEVGDRVLQALA 263 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L RLGGEEFA + +A LA LR+ +E ++ P IT Sbjct: 264 QRLEAHLRRSDRAVRLGGEEFALLLPETPLPQALRLAERLRRAVE----AMAVPPVARIT 319 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+AE + T++ RAD+A+Y AK+ G+NRV Sbjct: 320 ASFGVAEARPTDTPLTLLRRADEAMYRAKRKGKNRV 355 >gi|71909233|ref|YP_286820.1| GGDEF [Dechloromonas aromatica RCB] gi|71848854|gb|AAZ48350.1| GGDEF protein [Dechloromonas aromatica RCB] Length = 413 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 8/165 (4%) Query: 107 DCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N +F++ L S++++ LSI+ D+D+FK+IND +GH GD+ + Sbjct: 224 DPLTGVFNRRSFLTLLDKSISHSDRMASPLSIMLIDLDHFKKINDTWGHKSGDEALRHFV 283 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V +GR+GGEEFA + +AA +A LR + + G SI +T Sbjct: 284 AVAVPCIRNGDIIGRVGGEEFAILLPDTDISKAATVAERLRCEVAARPVKNEHG-SITLT 342 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 +S G+ E ++RAD A+Y AK GRN+V D+ N Sbjct: 343 VSIGVTHYRKDEAPEVTLHRADNAMYTAKDKGRNQVEVTPDLNNT 387 >gi|90023579|ref|YP_529406.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89953179|gb|ABD83194.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 588 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 13/181 (7%) Query: 91 KELFISYNRISQLSRIDCLSGL-----LNH---SAFISSLGSYNEKLSIVFFDIDYFKQI 142 +EL ++ ++ +LS D L+GL LNH F S Y ++SI+ DID FK I Sbjct: 406 EELELANEKLRELSDTDQLTGLKNRRFLNHYLEDEFARSC-RYGHRMSILLVDIDKFKHI 464 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 NDN+GH VGD I ++ L+ P V R GGEEF + + A +AN L Sbjct: 465 NDNYGHTVGDTCIQAIAKVLLESNRQPSDLVARYGGEEFCIVLPETDVEGALHVANRLLD 524 Query: 202 IIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ N+ I ++ +I++T S G A + I I AD ALY AKK+GR++VV + Sbjct: 525 MVRNTPI-YAAANTINVTCSIGCYTAVPNSTKQIIAFIDNADTALYEAKKTGRDKVVVYK 583 Query: 260 D 260 D Sbjct: 584 D 584 >gi|8118492|gb|AAF73001.1|AF262022_1 hypothetical protein [Vibrio cholerae] Length = 205 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGL N AF +L +++S++ DID+FK +NDN+GH GD++I ++ +L Sbjct: 49 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 108 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA A S + A A +R+ IE + + SG S+ IT S Sbjct: 109 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 168 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E+ + + ++I RAD LY AK GRNRV+ Sbjct: 169 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 203 >gi|292488001|ref|YP_003530878.1| hypothetical protein EAMY_1520 [Erwinia amylovora CFBP1430] gi|292899220|ref|YP_003538589.1| signal transduction protein [Erwinia amylovora ATCC 49946] gi|291199068|emb|CBJ46179.1| putative signal transduction protein [Erwinia amylovora ATCC 49946] gi|291553425|emb|CBA20470.1| Uncharacterized protein yneF [Erwinia amylovora CFBP1430] gi|312172125|emb|CBX80382.1| Uncharacterized protein yneF [Erwinia amylovora ATCC BAA-2158] Length = 464 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 11/167 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIV----FFDIDYFKQINDNFGHPV 150 RI++ + D L+G L S + L G N + V DID FK IND +GH Sbjct: 293 RITRRADYDFLTGALTRSGLSAKLDSLVGGRNRQQGFVGAALVIDIDRFKDINDTWGHAA 352 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+A ++ L + R+GGEEF G ++ +++LAN LR+ +EN++I Sbjct: 353 GDYVLAKTAECLRDGLSPSTLICRMGGEEFLILIQGITQARSSLLANRLRQSVENNEITF 412 Query: 211 SSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRV 255 +G + +T+S GI+ + + I RAD+ LY+AK GRN+V Sbjct: 413 -NGNDLSVTVSIGISSLNISNVNSLDESIKRADEQLYIAKSCGRNQV 458 >gi|261855860|ref|YP_003263143.1| diguanylate cyclase with PAS/PAC sensor [Halothiobacillus neapolitanus c2] gi|261836329|gb|ACX96096.1| diguanylate cyclase with PAS/PAC sensor [Halothiobacillus neapolitanus c2] Length = 423 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 16/173 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G+ N + L N L + D+D+FK +ND +GH GD Sbjct: 252 LERLATTDELTGIANRRQILQQLDHAYKRFIRLNHSLVVFILDLDFFKNVNDQYGHVSGD 311 Query: 153 ----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 + IA + Q+ + ++GRLGGEEF +S++ A + + +++ + Sbjct: 312 ILLKEFIARVQQQIREID----YLGRLGGEEFLLILDETSKETAEQIGQRILQVVRQTPF 367 Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ +G S+ IT+S G CHK+ I+ ++ AD+ALY AK SGRN++ + + Sbjct: 368 DLGAGVSVTITVSIGATSACHKDAKITELLEHADKALYAAKDSGRNKICWYCE 420 >gi|225619253|ref|YP_002720479.1| GGDEF domain-containing protein [Brachyspira hyodysenteriae WA1] gi|225214072|gb|ACN82806.1| GGDEF domain protein [Brachyspira hyodysenteriae WA1] Length = 331 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 18/187 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 ++K+L + + S ID L+GL N F + Y +SI+F D+D+ Sbjct: 145 KDKVIKKLMKEIDTLHAQSTIDPLTGLFNVRYFNKIIEEEVERAKRYKYSISIIFMDLDH 204 Query: 139 FKQINDNFGHPVGD-------KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 FK IND +GH G+ ++++ S+ + ++ + + + R GGEEF + +++ Sbjct: 205 FKDINDIYGHDCGNVVLHEIGRLLSNTSENINMLRKSDIAI-RYGGEEFIVICPNTKKEQ 263 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKK 249 A I+A +RK +E + + S I++T+S GIAE K+PI+ I AD A+Y AK Sbjct: 264 AYIVAERIRKTVEKKRFSYES-TIINVTVSVGIAEHKGTSKKPIAETIKNADTAMYEAKH 322 Query: 250 SGRNRVV 256 GRN+V+ Sbjct: 323 LGRNKVI 329 >gi|218440034|ref|YP_002378363.1| diguanylate cyclase [Cyanothece sp. PCC 7424] gi|218172762|gb|ACK71495.1| diguanylate cyclase [Cyanothece sp. PCC 7424] Length = 387 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 9/167 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y + L+ D L+ LN A I+ E+ +++ DID FK INDN+GH Sbjct: 215 YEDLRTLAIYDFLTETLNRRAMQLEINKEIAYFNRRKEQFALILMDIDRFKSINDNYGHD 274 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ + + +GR GGEEF + GS+ ++A ILA LR IE+ ++ Sbjct: 275 CGDLVLQHFTRTIKNNIRKEDALGRWGGEEFLILSRGSNVEDALILAERLRSAIESEKV- 333 Query: 210 ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ I T+S G+A H ++ AD+ALY AK SGRN+V Sbjct: 334 ITGHTIIKYTLSLGVAVYGIHGTTQEQLVKAADKALYEAKNSGRNQV 380 >gi|146291605|ref|YP_001182029.1| diguanylate cyclase [Shewanella putrefaciens CN-32] gi|145563295|gb|ABP74230.1| diguanylate cyclase [Shewanella putrefaciens CN-32] Length = 624 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 11/180 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142 L+EL ++++ S ID L+G+ N SAF L + + ++++ DID FK I Sbjct: 439 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIAVLMLDIDKFKSI 498 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD+ + ++ L P V R GGEEFA ++ A +A +R Sbjct: 499 NDQFGHLAGDQALKIIAQTLQQNLKRPTDLVSRFGGEEFAIILPNTTADGALQVAETIRD 558 Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + + + G I +T+S G++ + +T++ +AD+ALY AK SGRN+V +S Sbjct: 559 AVTSIGL-MWEGKPIPLTVSIGVSADIVASDQHSTTLLEQADKALYQAKNSGRNQVKLYS 617 >gi|309796753|ref|ZP_07691157.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] gi|308119635|gb|EFO56897.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] Length = 472 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 ++ I I +S + I+ S++K++ + + L+++ SGL + A S + L Sbjct: 277 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDYLTQVYSRSGL--YEALKSPSLKQTQHL 332 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DIDYFK INDN+GH GDKV++ + + + G V R+GGEEFA A + Sbjct: 333 TVMLLDIDYFKSINDNYGHECGDKVLSVFALHIQKIVGDKGLVARMGGEEFAVAVPSVNP 392 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244 + ++A +RK +E ++++T+S G+ R + + ++ AD L Sbjct: 393 VDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCL 451 Query: 245 YVAKKSGRNR 254 Y +KK GRNR Sbjct: 452 YRSKKDGRNR 461 >gi|251772817|gb|EES53377.1| diguanylate cyclase [Leptospirillum ferrodiazotrophum] Length = 363 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 13/172 (7%) Query: 106 IDCLSGLLNHSAFISSLGS-YNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ +LN F + + + E +++ DID+FK+IND++GH +GDK I + Sbjct: 184 VDPLTEILNRRGFSTKINDLFREGKFSGIPCALLMIDIDHFKKINDSYGHIIGDKAIIAV 243 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217 S L G +F+GR+GGEEFA + ++ +E LA LR+ I +I N S+ I Sbjct: 244 SKVLRGSVGENVFIGRVGGEEFAVFSPKTTSEEGLALAERLRQNIMKIEITNPSTRQKIS 303 Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS----DIENN 264 +T+S GI + RAD+ALY +K SGRN+V ++ DI+N+ Sbjct: 304 TMTVSIGIDLAPFSGEWERMFERADKALYASKSSGRNKVTLWTSKTPDIKNS 355 >gi|254458010|ref|ZP_05071437.1| GGDEF domain protein [Campylobacterales bacterium GD 1] gi|207085403|gb|EDZ62688.1| GGDEF domain protein [Campylobacterales bacterium GD 1] Length = 648 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 9/165 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + ++SR D L+G+ N F IS Y+ +S++ DID FK IND +GH +G Sbjct: 482 ELRKISRTDALTGIWNRRYFFEMLDREISRSQRYDINMSLLMIDIDLFKNINDTWGHDIG 541 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINI 210 DK I + + + RLGGEEF + + ++ +RK IE + I Sbjct: 542 DKAIKHVVNIINSNVRKENIFSRLGGEEFGIILIETKVPYTPQSISERIRKSIEAVPL-I 600 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 SI IT+S GIA + + +T+ R+D+ALY+AK++GRNRV Sbjct: 601 IDEKSIKITVSIGIANIMNNDTANTLYVRSDRALYLAKENGRNRV 645 >gi|153212185|ref|ZP_01947980.1| GGDEF family protein [Vibrio cholerae 1587] gi|153827799|ref|ZP_01980466.1| GGDEF family protein [Vibrio cholerae 623-39] gi|229514368|ref|ZP_04403829.1| GGDEF family protein [Vibrio cholerae TMA 21] gi|254284582|ref|ZP_04959549.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|124116737|gb|EAY35557.1| GGDEF family protein [Vibrio cholerae 1587] gi|148876644|gb|EDL74779.1| GGDEF family protein [Vibrio cholerae 623-39] gi|150425367|gb|EDN17143.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|229348348|gb|EEO13306.1| GGDEF family protein [Vibrio cholerae TMA 21] Length = 339 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGL N AF + +L +++S++ DID+FK +NDN+GH GD++I ++ +L Sbjct: 183 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 242 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA A S + A A +R+ IE + + SG S+ IT S Sbjct: 243 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 302 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E+ + + ++I RAD LY AK GRNRV+ Sbjct: 303 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 337 >gi|15601709|ref|NP_233340.1| GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586703|ref|ZP_01676487.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121726356|ref|ZP_01679630.1| GGDEF family protein [Vibrio cholerae V52] gi|147671516|ref|YP_001215124.1| GGDEF family protein [Vibrio cholerae O395] gi|153821045|ref|ZP_01973712.1| GGDEF family protein [Vibrio cholerae B33] gi|227812522|ref|YP_002812532.1| GGDEF family protein [Vibrio cholerae M66-2] gi|229505904|ref|ZP_04395413.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229510242|ref|ZP_04399722.1| GGDEF family protein [Vibrio cholerae B33] gi|229517628|ref|ZP_04407073.1| GGDEF family protein [Vibrio cholerae RC9] gi|229605436|ref|YP_002876140.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|298499730|ref|ZP_07009536.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|9658394|gb|AAF96852.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549131|gb|EAX59166.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121631104|gb|EAX63479.1| GGDEF family protein [Vibrio cholerae V52] gi|126521419|gb|EAZ78642.1| GGDEF family protein [Vibrio cholerae B33] gi|146313899|gb|ABQ18439.1| GGDEF family protein [Vibrio cholerae O395] gi|227011664|gb|ACP07875.1| GGDEF family protein [Vibrio cholerae M66-2] gi|227015603|gb|ACP11812.1| GGDEF family protein [Vibrio cholerae O395] gi|229345664|gb|EEO10637.1| GGDEF family protein [Vibrio cholerae RC9] gi|229352687|gb|EEO17627.1| GGDEF family protein [Vibrio cholerae B33] gi|229356255|gb|EEO21173.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229371922|gb|ACQ62344.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|297541711|gb|EFH77762.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 339 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGL N AF + +L +++S++ DID+FK +NDN+GH GD++I ++ +L Sbjct: 183 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 242 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA A S + A A +R+ IE + + SG S+ IT S Sbjct: 243 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 302 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E+ + + ++I RAD LY AK GRNRV+ Sbjct: 303 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 337 >gi|120600461|ref|YP_965035.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|120560554|gb|ABM26481.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|319424834|gb|ADV52908.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella putrefaciens 200] Length = 624 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 11/180 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142 L+EL ++++ S ID L+G+ N SAF L + + ++++ DID FK I Sbjct: 439 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIAVLMLDIDKFKSI 498 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD+ + ++ L P V R GGEEFA ++ A +A +R Sbjct: 499 NDQFGHLAGDQALKIIAQTLQQNLKRPTDLVSRFGGEEFAIILPNTTADGALQVAETIRD 558 Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + + + G I +T+S G++ + +T++ +AD+ALY AK SGRN+V +S Sbjct: 559 AVTSIGL-MWEGKPIPLTVSIGVSADIVASDQHSTTLLEQADKALYQAKNSGRNQVKLYS 617 >gi|146292338|ref|YP_001182762.1| diguanylate cyclase [Shewanella putrefaciens CN-32] gi|145564028|gb|ABP74963.1| diguanylate cyclase [Shewanella putrefaciens CN-32] Length = 577 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDI 136 + GS+ K F+ +++R+D L+G+LN A F+ + + ++ FD+ Sbjct: 382 VVGSLQKRKFM------RMARMDALTGVLNRGAGQELGENLFVQATARGGD-FCVILFDL 434 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND++GH GD + + + L R+GGEEFA ++E++ +A Sbjct: 435 DFFKRINDSYGHGTGDWALKKVVESLKSQIRNGDVFARIGGEEFAILLPYANEEKGMEVA 494 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 R IE SG +IT S G++ + + +++RAD ALY AK +GRN V Sbjct: 495 EQCRARIEAIDTQ-HSGHHFNITASFGVSGLMADDLSLDPLLHRADMALYAAKSNGRNTV 553 Query: 256 VCFSDI 261 C+SDI Sbjct: 554 YCYSDI 559 >gi|332992824|gb|AEF02879.1| diguanylate cyclase [Alteromonas sp. SN2] Length = 304 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 88/178 (49%), Gaps = 12/178 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQINDN 145 L + + ++ LSR+D L+ LLN A + L N K +S + DID+FK IND Sbjct: 124 LELKTDELTLLSRLDPLTNLLNRRAASADIRKLLDQVNRKFVPVSFLLIDIDFFKNINDK 183 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD+VI LS L V R GGEEF S++ +A + L + I Sbjct: 184 HGHDVGDEVIGLLSKTLKAATRKTDVVARWGGEEFLIVLYNSTQDDARLYCKYLHERI-- 241 Query: 206 SQINISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +++ S I ++I + +R + T+I AD ALY AK GRNR V +D Sbjct: 242 AEMRYSRADRITVSIGVTQLPVPQRDTVLQVETLIKEADDALYRAKDEGRNRTVFHTD 299 >gi|222870108|gb|EEF07239.1| predicted protein [Populus trichocarpa] Length = 205 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 14/176 (7%) Query: 98 NRISQLSRI---DCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNF 146 R SQL + D L+G+ N AF+ L + L +++ DID+FKQ+ND + Sbjct: 24 QRESQLETLALTDALTGIPNRRAFMERLTMELDHLRSGLVAHSTLIMLDIDHFKQVNDGY 83 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIEN 205 GH VGD V+ L + VGRLGGEEF A L ++ E + A LR+ + Sbjct: 84 GHAVGDIVLKELLASVAQEMRKEDMVGRLGGEEF-AVLLSDTDAEVGLRRAESLRETVAA 142 Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSD 260 I+ +HITIS G+ E + + + RAD ALY +K++GRN+ +S+ Sbjct: 143 RAIDAGLAGDLHITISLGVYELQRSDASAQGCLERADAALYYSKRNGRNQSTLWSE 198 >gi|120599667|ref|YP_964241.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|120559760|gb|ABM25687.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|319425640|gb|ADV53714.1| diguanylate cyclase [Shewanella putrefaciens 200] Length = 577 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 17/186 (9%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDI 136 + GS+ K F+ +++R+D L+G+LN A F+ + + ++ FD+ Sbjct: 382 VVGSLQKRKFM------RMARMDALTGVLNRGAGQELGENLFVQATARGGD-FCVILFDL 434 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND++GH GD + + + L R+GGEEFA ++E++ +A Sbjct: 435 DFFKRINDSYGHGTGDWALKKVVESLKSQIRNGDVFARIGGEEFAILLPYANEEKGMEVA 494 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 R IE SG +IT S G++ + + +++RAD ALY AK +GRN V Sbjct: 495 EQCRARIEAIDTQ-HSGHHFNITASFGVSGLMADDLSLDPLLHRADMALYAAKSNGRNTV 553 Query: 256 VCFSDI 261 C+SDI Sbjct: 554 YCYSDI 559 >gi|226309459|ref|YP_002769421.1| hypothetical protein RER_59740 [Rhodococcus erythropolis PR4] gi|226188578|dbj|BAH36682.1| hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 510 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 102/187 (54%), Gaps = 14/187 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFK 140 ++L+++ + + + + D L+ L N +AF S++ +Y N ++ D+D FK Sbjct: 328 ALLQQISAAQDELRYRAHHDPLTELANRAAFDEHFASAIENYRLTNSDWVLMLVDLDDFK 387 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND +GHP GD+++ L+ +L FV R GG+EF G + +A ++A R Sbjct: 388 QVNDRYGHPAGDRLLVALTARLREAVPESAFVARFGGDEFTVLLQGPID-DAVVVA---R 443 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257 +I++ + ++ S+ + S G+A+ EP+S ++ RAD A+Y AK+SG+ VV Sbjct: 444 RIVDALSSDQTADTSVSVGASVGVAQFELADEPLSAHALLRRADAAMYEAKRSGKGAVVV 503 Query: 258 FSDIENN 264 + D + Sbjct: 504 YCDRRED 510 >gi|153801380|ref|ZP_01955966.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|229522481|ref|ZP_04411897.1| GGDEF family protein [Vibrio cholerae TM 11079-80] gi|229526494|ref|ZP_04415898.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229528145|ref|ZP_04417536.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|297579995|ref|ZP_06941922.1| GGDEF family protein [Vibrio cholerae RC385] gi|124123046|gb|EAY41789.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|229334507|gb|EEN99992.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|229336652|gb|EEO01670.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229340466|gb|EEO05472.1| GGDEF family protein [Vibrio cholerae TM 11079-80] gi|297535641|gb|EFH74475.1| GGDEF family protein [Vibrio cholerae RC385] Length = 339 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGL N AF + +L +++S++ DID+FK +NDN+GH GD++I ++ +L Sbjct: 183 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 242 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA A S + A A +R+ IE + + SG S+ IT S Sbjct: 243 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 302 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E+ + + ++I RAD LY AK GRNRV+ Sbjct: 303 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 337 >gi|88797809|ref|ZP_01113397.1| putative sensor protein [Reinekea sp. MED297] gi|88779486|gb|EAR10673.1| putative sensor protein [Reinekea sp. MED297] Length = 411 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 12/163 (7%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+LN A + L +N L+++F D+D+FKQ+ND++GH VGD+++ Sbjct: 252 DSLTGVLNRRALTTRLDEEVQRSRRHNHPLTLLFLDLDHFKQVNDHYGHAVGDQILQETC 311 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIH 217 L + R GGEEFA ++ + LA L++ S+ I P Sbjct: 312 QALTECIRESDVLARYGGEEFAIILTDTTLEAGHELAERLQECFSTRFSRHAILEKP--- 368 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T+S G+ + ++ + RAD ALY AK SGRNR+V D Sbjct: 369 LTMSVGLTSLFPTDTLTQLFTRADTALYDAKNSGRNRIVIAQD 411 >gi|293605293|ref|ZP_06687679.1| HAMP domain/GAF domain/GGDEF domain protein [Achromobacter piechaudii ATCC 43553] gi|292816349|gb|EFF75444.1| HAMP domain/GAF domain/GGDEF domain protein [Achromobacter piechaudii ATCC 43553] Length = 531 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 7/166 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +R++ S D ++GL+N A + L + +++ D+D+FKQIND GHPVGD+V Sbjct: 354 DRLNAESMTDPMTGLMNRRAMRLRLDELIAARSAFAVIALDVDHFKQINDTHGHPVGDQV 413 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L+ L R+GGEEF G++E A A +R + + + G Sbjct: 414 LIALARTLRASVRQQDRPFRVGGEEFVVIVPGATEPVALAAAERIRASVAQTPMPQGVG- 472 Query: 215 SIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 +T+S G+A P + + ADQALY +K+ GRNRV ++ Sbjct: 473 --QVTVSVGLALWPGDAPSPQAVVKCADQALYASKQGGRNRVTRWN 516 >gi|254294350|ref|YP_003060373.1| response regulator receiver modulated diguanylate cyclase [Hirschia baltica ATCC 49814] gi|254042881|gb|ACT59676.1| response regulator receiver modulated diguanylate cyclase [Hirschia baltica ATCC 49814] Length = 459 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 107/202 (52%), Gaps = 14/202 (6%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSLGS 124 +++ I LL + + K+ +I R +L+ D L+GL N + L Sbjct: 253 DILVRPIDPEELLARVKTQVSKKRYIDSLRARLDQSMELAVTDQLTGLHNRRYMENQLEQ 312 Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + ++ +SI+ D+D+FK++ND GH VGD+V+ SD+L+ R GG Sbjct: 313 FMKRANMGGGPVSILLCDLDHFKKVNDGHGHDVGDEVLRQFSDRLMHNIRPSDIACRYGG 372 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAER-CHKEPIST 235 EEF ++ Q A + A +R+ ++ + +I++G + +T+S G + + ++ Sbjct: 373 EEFMVIMPDTTIQMAQLTAERIREKVDGAPFSINNGLGRLDVTMSGGASVTFPPDDSVAQ 432 Query: 236 IIYRADQALYVAKKSGRNRVVC 257 +I RAD+ALY AK++GRNR+VC Sbjct: 433 LIKRADEALYNAKENGRNRIVC 454 >gi|206901960|ref|YP_002250285.1| sensory box/ggdef family protein [Dictyoglomus thermophilum H-6-12] gi|206741063|gb|ACI20121.1| sensory box/ggdef family protein [Dictyoglomus thermophilum H-6-12] Length = 300 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 8/162 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +L+ ID L+G+LN I++ + ++F DID FK+IND +GH VG Sbjct: 134 KLRELTYIDELTGVLNRRGLNFFLRKQINNFKKNKKAFGVLFMDIDNFKEINDRYGHNVG 193 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ LS+ L T V R GG+EF L ++ +IENS + Sbjct: 194 DKVLKMLSETLKNNLRTEDMVARYGGDEFVVILQVGDINTLESLTKRIKNLIENSFLE-E 252 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +G I IT+S G + ++T++ RAD+ +Y +KK G+N Sbjct: 253 AGRIIKITVSVGGTLIRENDTMNTLLKRADELMYQSKKEGKN 294 >gi|158339273|ref|YP_001520450.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158309514|gb|ABW31131.1| diguanylate cyclase (GGDEF domain), putative [Acaryochloris marina MBIC11017] Length = 394 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 11/205 (5%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118 LVEN + + + L I ++LF + ++S L+ D L+GL N F Sbjct: 189 LVENNKKLELEVQAKLHAQQNLEIINEKLFEANKKLSLLANQDALTGLANRRYFDVYLQQ 248 Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLG 176 S LSI+ DID+FK ND++GHP GD + +S + V G + F R G Sbjct: 249 VWESAQENKHPLSILICDIDFFKGYNDSYGHPEGDHCLQRVSQIIHRVAGKSEGFAARFG 308 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIA--ERCHKEPI 233 GEEFA ++ ++ +A LR I N+++ + +S S ++T+S G+ + I Sbjct: 309 GEEFAMVLPNTNLIDSQTIAGKLRSEIHNARLPHRASTVSEYVTVSIGVTSIQFQSDGSI 368 Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258 + +I+RADQALY AKK GRN+ V Sbjct: 369 NDLIHRADQALYGAKKLGRNQFVTL 393 >gi|323497254|ref|ZP_08102274.1| sensory box/GGDEF family protein-like protein [Vibrio sinaloensis DSM 21326] gi|323317829|gb|EGA70820.1| sensory box/GGDEF family protein-like protein [Vibrio sinaloensis DSM 21326] Length = 633 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 95/181 (52%), Gaps = 26/181 (14%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGH 148 +R+ LS D L+ L N F + + + +E+ S+ DID+FK++ND FGH Sbjct: 464 DRLRDLSEKDPLTSLWNRRKFDAEMSAQTLRIKRYPTSEQASLAILDIDHFKRVNDKFGH 523 Query: 149 PVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GD+VI ++ VV G + + R+GGEEFA + EA I+ N LR Sbjct: 524 DKGDQVIRAVA----VVLGEHLRETDVIARIGGEEFAIIMPHTPLNEAEIVVNRLR---- 575 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + I+I S + ITISAG+ + C E S RAD ALY +K GRN+V + EN+ Sbjct: 576 -TAIHIES--ELGITISAGVTDIC--EDPSASYKRADIALYESKTLGRNQVNILTTSENS 630 Query: 265 T 265 + Sbjct: 631 S 631 >gi|298292317|ref|YP_003694256.1| diguanylate cyclase with GAF sensor [Starkeya novella DSM 506] gi|296928828|gb|ADH89637.1| diguanylate cyclase with GAF sensor [Starkeya novella DSM 506] Length = 340 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 11/181 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL +++L+R+D L+GL N F L ++ S++ DID FK +ND Sbjct: 161 ELNTLNRELTRLTRVDALTGLANRRCFDEELARAGQRCRRTGEAFSVMLIDIDRFKALND 220 Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 FGH GD+ + + L + + R GGEEFAA GS E A +A +R + Sbjct: 221 GFGHQAGDEALRRVGAALGGMAARQDDTLARYGGEEFAAILCGSDESGALSVAGRIRSAL 280 Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +Q I + +T+S GI R E + +I +AD ALY AK+ GR+ VVC D + Sbjct: 281 --AQAAIVHPVTGKVTVSIGIVSRPASEIDLDRMIAQADAALYEAKRRGRDLVVCHEDPD 338 Query: 263 N 263 Sbjct: 339 G 339 >gi|238895484|ref|YP_002920219.1| hypothetical protein KP1_3555 [Klebsiella pneumoniae NTUH-K2044] gi|238547801|dbj|BAH64152.1| hypothetical protein KP1_3555 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 559 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 17/203 (8%) Query: 69 LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120 L+L+ + T+ LLL ++ +++ + + + + D L+ LLN A S Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 L+++ D+D+FK IND +GH GD+V++ ++ L +GR+GGEEF Sbjct: 417 DCQRSGRPLAVIQLDLDHFKHINDRYGHQAGDRVLSMVASTLSSAVRQGDLLGRVGGEEF 476 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPIST 235 ++ QEAA +A LR+ I+ ++ + + ++ ++ S G++ + E + + Sbjct: 477 CIVMPNTTLQEAAAVAERLRQRIQGREVFLHNNVTLRVSASLGVSASEERGEYQFEALQS 536 Query: 236 IIYRADQALYVAKKSGRNRVVCF 258 + AD LY+AK++GRN+ VCF Sbjct: 537 V---ADGRLYLAKQNGRNQ-VCF 555 >gi|167588829|ref|ZP_02381217.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu] Length = 511 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 10/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 LK ++ +++ +L+ D L+GL N F + L ++ LS++F D+D+FK Sbjct: 326 LKRRQVAESKLYRLAHTDALTGLDNRGRFDAVLAQEAQRATRSGRPLSVLFIDVDHFKSF 385 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD V+ ++ + P V R GGEEF + + AA++A +R+ Sbjct: 386 NDYYGHQAGDNVLRQVAQCALRCLRRPSDHVARYGGEEFVVTLPDTDARGAAVVAEAIRR 445 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255 I + P +T+S G A I +T++ AD+ALY AK SGRNRV Sbjct: 446 AIAGLDVEHVMSPYGLVTVSIGTATTTRDRAINAATLLKLADEALYEAKSSGRNRV 501 >gi|197336023|ref|YP_002155793.1| sensory box/ggdef family protein [Vibrio fischeri MJ11] gi|197317513|gb|ACH66960.1| sensory box/ggdef family protein [Vibrio fischeri MJ11] Length = 631 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 17/174 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF---------FDIDYFKQINDNFGH 148 N + +LS D L+ N F + K ++ DIDYFK+IND +GH Sbjct: 461 NCLRELSEKDMLTQCWNRRKFEAEFSKLTNKQRLMLEVNLSCLAIIDIDYFKRINDQYGH 520 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGDKVI ++ L + FV R+GGEEFA +S +EA ++ N LR I Sbjct: 521 DVGDKVIKNVARILQTESRSIDFVARIGGEEFAILLPNTSLKEAEVILNRLR-----VAI 575 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ G S +T+S G+ + C + RAD ALY +K +GRN++ CF E Sbjct: 576 YLADG-SQSVTVSGGVTDIC--DCGEATYKRADLALYESKTAGRNQISCFPSSE 626 >gi|152970968|ref|YP_001336077.1| hypothetical protein KPN_02424 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955817|gb|ABR77847.1| hypothetical protein KPN_02424 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 559 Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 17/203 (8%) Query: 69 LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120 L+L+ + T+ LLL ++ +++ + + + + D L+ LLN A S Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 L+++ D+D+FK IND +GH GD+V++ ++ L +GR+GGEEF Sbjct: 417 DCQRSGRPLAVIQLDLDHFKHINDRYGHQAGDRVLSMVASTLSSAVRQGDLLGRVGGEEF 476 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPIST 235 ++ QEAA +A LR+ I+ ++ + + ++ ++ S G++ + E + + Sbjct: 477 CIVMPNTTLQEAAAVAERLRQRIQGREVFLHNNVTLRVSASLGVSASEERGEYQFEALQS 536 Query: 236 IIYRADQALYVAKKSGRNRVVCF 258 + AD LY+AK++GRN+ VCF Sbjct: 537 V---ADGRLYLAKQNGRNQ-VCF 555 >gi|297566757|ref|YP_003685729.1| diguanylate cyclase [Meiothermus silvanus DSM 9946] gi|296851206|gb|ADH64221.1| diguanylate cyclase [Meiothermus silvanus DSM 9946] Length = 351 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 16/199 (8%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLG---SYN 126 I+ + L Y+ + L +++ R +L + D L+GLLN +L + Sbjct: 159 IVRLAAMAALLYVFSNAKDRLALAHQRARELHLLAHTDGLTGLLNRLGATRALEDRLAAQ 218 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 +++V DID+FK IND FGH VGD V+ + +L VGR GGEEF L Sbjct: 219 RPIAVVLADIDHFKSINDRFGHAVGDDVLIEVGVRLRDALREGDAVGRWGGEEF-LMILE 277 Query: 187 SSEQEAAILANDLRKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQA 243 S+E A++ ++E Q + S P +T+S G+A E + ++ RAD+A Sbjct: 278 SAEAGQALV------LVERLQNRMHSRPFPGVGRVTVSLGVAVHQPGESQADLLRRADEA 331 Query: 244 LYVAKKSGRNRVVCFSDIE 262 LY AK+ GRNR V + E Sbjct: 332 LYAAKRQGRNRAVLSTPRE 350 >gi|241206917|ref|YP_002978013.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860807|gb|ACS58474.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 539 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 10/164 (6%) Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ D L+GL N SA ++ + +S+V FD+D+FK+IND GH GD V+ Sbjct: 351 AQTDLLTGLYNRRGFEVAASALLTQAEHGSRWISVVLFDLDHFKKINDVHGHDAGDAVLR 410 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ F + + R GGEEF A S+ +AAI+A +R IE ++I + SG + Sbjct: 411 HVAGVARKNFRSFDLLVRHGGEEFLALLPDSTPDDAAIVAERVRLAIEAAEIPLPSGDVL 470 Query: 217 HITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVC 257 +T S G A R ++ ++ RAD ALY AK SGRN VV Sbjct: 471 KVTASFGCAGRANEATNRNFEDLVKRADLALYAAKASGRNCVVS 514 >gi|50120026|ref|YP_049193.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043] gi|49610552|emb|CAG73997.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043] Length = 235 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 4/151 (2%) Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ + N A I + E+ +++ DID+FKQ+ND +GHP GD VI L ++ Sbjct: 84 DPLTSVYNRGAIIERINHALERNQAALIVLDIDHFKQVNDTYGHPTGDAVICDLVSRVQH 143 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 V T +GR+GGEEF G + +A LA+ L + + +++ +S P +T S G+ Sbjct: 144 VLNTTSSIGRVGGEEFTILLEGHTLMQAVALASQLHQDL--NRMPLSVLPQQRVTASFGV 201 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + K + AD ALY AK+ GRNRV Sbjct: 202 SWAPQKTSFDALYGAADVALYKAKEKGRNRV 232 >gi|91977925|ref|YP_570584.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91684381|gb|ABE40683.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris BisB5] Length = 644 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 5/160 (3%) Query: 99 RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R++++++ D L+GL N + FI+++ + + L+++ DIDYFK +ND GH GD+ + Sbjct: 458 RLAEMAKTDGLTGLPNRRSLDDFINNVFATHADLAVLMIDIDYFKGLNDCLGHQAGDEGL 517 Query: 156 AFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L VV T R GGEEFA GS + A LA R I + + + P Sbjct: 518 RQIGKLLGDVVANTGGLAARYGGEEFAVILPGSDAKAAMALAETARIKIRDLALANPAAP 577 Query: 215 SIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253 + +T+S G+A R P ++ ++R AD ALY AK+ R+ Sbjct: 578 NQRLTVSIGVASRTSATPDASTLFREADIALYEAKRRSRD 617 >gi|114564388|ref|YP_751902.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114335681|gb|ABI73063.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 359 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 10/166 (6%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +++ +D L+GL N SL ++ +S++ D+D+FK+IND +GH VG Sbjct: 174 RLQKMASLDPLTGLNNRLLLDSIFDMLCESLPEQHQSVSVLILDLDHFKRINDQYGHDVG 233 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ +S + V + RLGGEEF S+ Q+A +A LRK +E + + Sbjct: 234 DKVLVEVSRIINSVRRQNDWAFRLGGEEFCMLIPDSNLQQAGQIAERLRKAVE--LVTVI 291 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 G ++++IS G++ + IY+ AD LY AK GRN+V+ Sbjct: 292 DGSELNLSISIGVSRWPEDGAHFSQIYKTADARLYQAKTLGRNKVI 337 >gi|157963802|ref|YP_001503836.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157848802|gb|ABV89301.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 396 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 119/238 (50%), Gaps = 33/238 (13%) Query: 35 FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94 F+I+ AT + A + +I L FY L + L L I+ +TI L L Y++ +++ Sbjct: 173 FTIWRATGVDSAIMVTLFIWLFHFY-----LPDELPLSIL-LTI-LALAYLTSILVRSHN 225 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++Y D L+GL + + + S N+ + DID+FK+ ND +GH VGD+V Sbjct: 226 LAYR--------DELTGLASRRSLNTLAHSLNKHYCLAMVDIDHFKKFNDTYGHDVGDQV 277 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII----------- 203 + ++ +L V G V R GGEEF + + L ++R+ I Sbjct: 278 LQLVAKKLSKVEGGGK-VFRYGGEEFTIVFTNKNIEAVLPLLEEIRRKISQYNIVLRNQR 336 Query: 204 --ENSQINISSG----PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S++N G P ++ITIS G+AE+ + + RAD+ALY AK +GRN+V Sbjct: 337 RKNQSKLNRDEGHKTNPVVNITISIGVAEQHGETSFENTLKRADKALYKAKNNGRNQV 394 >gi|90023067|ref|YP_528894.1| putative diguanylate cyclase (GGDEF) [Saccharophagus degradans 2-40] gi|89952667|gb|ABD82682.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 368 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 115/257 (44%), Gaps = 21/257 (8%) Query: 14 CHE---KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70 CH L +++P Y + + ++ + F + L G + +E S Sbjct: 110 CHAVIASKLVNYTPFAPEAYLGVVWIFVVSGMTFRYALISAITALCILAGSAFYFIEQQS 169 Query: 71 LVIISI---TISLLLGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAF----- 118 ++ + S G++ +L K+ F+S + L+ D L+GL N + Sbjct: 170 SYVMHVFWLACSFSFGFLGALMLDRSRKQFFVSQQELQHLAVTDPLTGLYNRNQLNIVLN 229 Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 ++ YN ++ D+D+FK IND+FGH GD V+ +S L+ V R G Sbjct: 230 KEMAREQRYNRSFGLLVIDVDFFKSINDSFGHEAGDNVLKQISQDLLQSVRKIDTVIRWG 289 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236 GEEF A +Q L+ +L K IE S+ N +T+S G + S + Sbjct: 290 GEEFIVVASEVDKQSIVALSENLCKKIEGSEFNGVG----RVTVSIGATLYKLDDTPSDL 345 Query: 237 IYRADQALYVAKKSGRN 253 + RAD+ALY AK++GRN Sbjct: 346 LSRADKALYKAKETGRN 362 >gi|327396404|dbj|BAK13826.1| diguanylate cyclase YddV [Pantoea ananatis AJ13355] Length = 365 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 81/280 (28%), Positives = 130/280 (46%), Gaps = 38/280 (13%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFL------FYIGLTPFYGLEYI 64 +W H + + H+ +I F + + V FI+ I L F + +TP + Sbjct: 83 LWAWHIQ----YRYHSVLIDDGGFLIVSLLCVFFISAIALSDYLVAFCLHITPSMLTVLM 138 Query: 65 LVENLSLVIISITISL-LLGYISGSILK------------ELFISYNRISQLSRIDCLSG 111 L L +I +TI+L L+G+ +++ +L+ S LS +D L+G Sbjct: 139 LDHGQHLPLILLTIALPLIGFSLQHLMRRRSEDFTLRLMYQLYEEKESFSDLSMLDPLTG 198 Query: 112 LLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 L N + L GS+ ++ DID+FK NDN+GH +GD+ +A +S + Sbjct: 199 LYNRRGLKNRLDNILDNHVGSH----YVLLLDIDHFKAYNDNYGHAMGDQALARVSVAIR 254 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITIS 221 + V R GGEEF + A LA +R+ + N +I + S H+TIS Sbjct: 255 DAVRSRDVVTRYGGEEFLVLMTNVNASIAMKLAERIRQYVVNLEIPHLFNERVSTHVTIS 314 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 AGIA + + AD+ALYVAK GRN ++ + D+ Sbjct: 315 AGIAP-IYDNEFDQAVANADRALYVAKNRGRNTILAWEDL 353 >gi|326794582|ref|YP_004312402.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326545346|gb|ADZ90566.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 426 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 21/246 (8%) Query: 29 IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI---ISITISLLLGYI 85 ++ + ++ + FI + Y+ L Y L+ + + +V+ I+ T+ ++L + Sbjct: 178 LFLEVRKAVIVTIASFIVTLIGHYLALIQHYPLD----DTVGVVLNIGIAHTVYIVLLWT 233 Query: 86 SGSILKELFISYNRISQLSR---IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFD 135 + E ++ R+S L + ID L+ +LN ++ + +I+ D Sbjct: 234 VVQMRVEHTKTHERLSTLEQHAMIDQLTNVLNRRGIEDVFKHAEENWINHKQPYAILLID 293 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FKQ+ND +GH VGDKV+A + L + VGR GGEEF S +E L Sbjct: 294 IDHFKQVNDQYGHLVGDKVLADFAALLNKLTVASNSVGRWGGEEFIILVKSRSNEECFSL 353 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 A +R+ +E S + G ++IS G+ ++ + +AD LY AKK+GRN+V Sbjct: 354 AEKVRQTVERSTL----GGLKELSISIGVGYANEEKSLFETFQQADSYLYAAKKTGRNKV 409 Query: 256 VCFSDI 261 + + I Sbjct: 410 IDRNQI 415 >gi|114321799|ref|YP_743482.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] gi|114228193|gb|ABI57992.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] Length = 559 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 9/168 (5%) Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 SR D L+G+ N A+ L + L++VFFD+D+FK IND GH GD+ +A Sbjct: 376 SREDRLTGVPNRRAWEERLDYEFARWQRHRRPLALVFFDVDHFKLINDRLGHAAGDQALA 435 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ ++ F+ R GGEEF A ++ +EAA +A+ + + + G Sbjct: 436 QIAGRIHRRLRRSDFLARYGGEEFVALLPETTSEEAAQVADAVLQGLREDGFEY-DGVDY 494 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 +T SAG+A + + ++ RADQALY+AK GR+R VC + E + Sbjct: 495 SVTASAGVAGFTADDGPAAVLKRADQALYLAKSGGRDR-VCVAPPEGS 541 >gi|260426532|ref|ZP_05780511.1| response regulator PleD (Stalked cell differentiation-controlling protein) [Citreicella sp. SE45] gi|260421024|gb|EEX14275.1| response regulator PleD (Stalked cell differentiation-controlling protein) [Citreicella sp. SE45] Length = 478 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 11/161 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L ++ +++ D+D+FK IND GH VGD V+ + Sbjct: 293 DPLTGLYNRRYVLPHLTRVADRAIEKARSYALLLLDLDHFKTINDAHGHAVGDAVLVEAA 352 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS--IH 217 ++ V R+GGEEF +SE A + A LR +I + + P Sbjct: 353 RRMSANLRPSDLVARIGGEEFLVVMPDTSENTALLAAERLRSVISKTPFTVPGLPEGGRQ 412 Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T S G+A R EP ++ RAD+ALYVAK SGRN+V Sbjct: 413 VTASIGVALPRRTRAEPPEILLDRADRALYVAKNSGRNQVA 453 >gi|153818336|ref|ZP_01971003.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|126511149|gb|EAZ73743.1| GGDEF family protein [Vibrio cholerae NCTC 8457] Length = 319 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGL N AF +L +++S++ DID+FK +NDN+GH GD++I ++ +L Sbjct: 163 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 222 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA A S + A A +R+ IE + + SG S+ IT S Sbjct: 223 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 282 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E+ + + ++I RAD LY AK GRNRV+ Sbjct: 283 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 317 >gi|86359680|ref|YP_471572.1| putative cellulose biosynthesis transcriptional regulator protein [Rhizobium etli CFN 42] gi|86283782|gb|ABC92845.1| putative cellulose biosynthesis transcriptional regulator protein [Rhizobium etli CFN 42] Length = 539 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 90/164 (54%), Gaps = 10/164 (6%) Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ D L+GL N F S+L + E +S+V FD+D+FK+IND GH GD V+ Sbjct: 351 AQTDLLTGLYNRRGFDVAASALLTQAEHGSHWISVVLFDLDHFKKINDIHGHDAGDAVLR 410 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ F + + R GGEEF A S+ AAI+A +R+ IE ++I ++SG + Sbjct: 411 HVAGVARQNFRSFDLLVRHGGEEFLALLPDSTPGNAAIVAERVRQAIEAAEIPLASGDLL 470 Query: 217 HITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVC 257 +T S G A R + ++ RAD ALY AK SGRN VV Sbjct: 471 KVTASFGCAGRANDAANRNFEDLVKRADLALYAAKASGRNCVVS 514 >gi|325289534|ref|YP_004265715.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271] gi|324964935|gb|ADY55714.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271] Length = 382 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 11/160 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155 +S ID L+ + N L E+ +S++ D+D+FK IND +GH GDKV+ Sbjct: 224 MSNIDDLTNIYNRRKLNEFLELEYERCRAAGKNISLILIDVDFFKAINDTYGHSAGDKVL 283 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L VGR GGEEF ++ +EA LA +R++++N + + Sbjct: 284 EQFGKLLKQNVSLNNIVGRWGGEEFLMICPETNLEEAVCLAEKIRRMVQNDDFKLEN--- 340 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G+A + + I+ +I RAD+ LY AK GRNRV Sbjct: 341 -QVTCSLGVATNQNIDTITNLIIRADRGLYRAKALGRNRV 379 >gi|304405417|ref|ZP_07387076.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] gi|304345456|gb|EFM11291.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] Length = 549 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 82/155 (52%), Gaps = 8/155 (5%) Query: 106 IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 +D L+GLLN A +S E S+V DID FK +ND GH VGD+V+ L+D L Sbjct: 381 VDPLTGLLNRRALEEEMSKRAENEEPFSLVVLDIDRFKCVNDTLGHQVGDEVLKSLADVL 440 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 R GGEEF GS +EA LA +R IE + ++ + IT+S Sbjct: 441 NHSVRAHDMCCRFGGEEFVILLPGSGVEEAFHLAERIRLTIEKT----ATPANRVITVSL 496 Query: 223 GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 GIA H +T+ AD+ALY AK++GRNR + Sbjct: 497 GIAAYPQHAADTNTLFKLADEALYAAKEAGRNRTM 531 >gi|289674479|ref|ZP_06495369.1| GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 449 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ L + E+ L + D+D+FK+IND +GH GDKV Sbjct: 287 QKALIDPLTGLPNRAAWGERLEQEMARWQEEKNSLLVCILDLDHFKRINDGYGHLAGDKV 346 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ L F+ R GGEEF +S L ++LR +E+ + G Sbjct: 347 LKIVANVLSKRLRADDFMARFGGEEFVMLLPATSPAAGLTLLDELRAAVESCPFHF-KGE 405 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNR+ Sbjct: 406 RVTITVSIGLTAFRPSEKSDTAIKRADQALYKAKENGRNRI 446 >gi|229522390|ref|ZP_04411806.1| GGDEF family protein [Vibrio cholerae TM 11079-80] gi|229340375|gb|EEO05381.1| GGDEF family protein [Vibrio cholerae TM 11079-80] Length = 326 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 +++ +Y I S D L+GLLN H+ I+ N KL I DID+FK I Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+FGH +GD+++ + Q+ FG + R GGEEF +E + + R+ Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQHLDGFRQ- 250 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 QI + P I ++ SAG + + TI+ AD+ALY AK+ GRN+V C+ + Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306 Query: 262 ENN 264 N Sbjct: 307 CEN 309 >gi|209515923|ref|ZP_03264784.1| diguanylate cyclase [Burkholderia sp. H160] gi|209503581|gb|EEA03576.1| diguanylate cyclase [Burkholderia sp. H160] Length = 241 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/151 (40%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+G+LN SA I S V DID FK+IND++GHP GD VI + D L Sbjct: 88 DALTGVLNRSAVIERTTKVLRTNSAVMIILDIDEFKRINDDYGHPTGDAVILGVVDCLRR 147 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 + G F+GR+GGEEF G A+LA +R+ I S + I + A I Sbjct: 148 IVGEQGFIGRVGGEEFTVLLPGHDPASGALLAERMREAISESLVVAPVDRRITASFGASI 207 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E T AD ALY AK+SGRNRV Sbjct: 208 NE--IGTGFDTAYGLADAALYRAKRSGRNRV 236 >gi|119485195|ref|ZP_01619580.1| GGDEF domain protein [Lyngbya sp. PCC 8106] gi|119457423|gb|EAW38548.1| GGDEF domain protein [Lyngbya sp. PCC 8106] Length = 514 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 109/227 (48%), Gaps = 17/227 (7%) Query: 39 IATVIF--IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY---ISGSILKEL 93 IAT+ + IF ++I ++ G +Y+L ++ +S+ I LL Y I K+L Sbjct: 287 IATISYEDRQKIFYYWISVSYDKGFDYVLF--WEIMAVSLVILSLLFYRNLIISRYNKKL 344 Query: 94 FISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNF 146 + ++ L + D L+GL N + YN S+V D+D+FKQIND + Sbjct: 345 IEANKKLDCLYKTDKLTGLFNRHIIDEETEKEVLRANRYNLGFSVVLLDVDHFKQINDTY 404 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH VGD V+ ++ L VGR GGEEF + AA LA LR IE Sbjct: 405 GHHVGDSVLVEIAFILKNNLRKTDVVGRWGGEEFIVICPETQLTNAAHLAEKLRSQIECH 464 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 Q SG IT S G++ + + ++I R D LY +K++ RN Sbjct: 465 QF---SGVEKTITASFGVSAYRVDDTVESLIKRVDSTLYFSKRNNRN 508 >gi|262191934|ref|ZP_06050101.1| GGDEF family protein [Vibrio cholerae CT 5369-93] gi|262032168|gb|EEY50739.1| GGDEF family protein [Vibrio cholerae CT 5369-93] Length = 338 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGL N AF + +L +++S++ DID+FK +NDN+GH GD++I ++ +L Sbjct: 182 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 241 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA A S + A A +R+ IE + + SG S+ IT S Sbjct: 242 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 301 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E+ + + ++I RAD LY AK GRNRV+ Sbjct: 302 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 336 >gi|153824663|ref|ZP_01977330.1| ggdef family protein [Vibrio cholerae MZO-2] gi|149741619|gb|EDM55648.1| ggdef family protein [Vibrio cholerae MZO-2] Length = 338 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGL N AF + +L +++S++ DID+FK +NDN+GH GD++I ++ +L Sbjct: 182 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 241 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA A S + A A +R+ IE + + SG S+ IT S Sbjct: 242 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 301 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E+ + + ++I RAD LY AK GRNRV+ Sbjct: 302 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 336 >gi|255746666|ref|ZP_05420613.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio cholera CIRS 101] gi|262166966|ref|ZP_06034685.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio cholerae RC27] gi|255736420|gb|EET91818.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio cholera CIRS 101] gi|262024607|gb|EEY43289.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio cholerae RC27] Length = 461 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND FG Sbjct: 289 QQLEEANQKLSYLAKTDSLTDIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFG 348 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 349 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 408 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 409 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 456 >gi|15601316|ref|NP_232947.1| GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|147671644|ref|YP_001215330.1| GGDEF family protein [Vibrio cholerae O395] gi|153819246|ref|ZP_01971913.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|153822850|ref|ZP_01975517.1| GGDEF family protein [Vibrio cholerae B33] gi|227812125|ref|YP_002812135.1| GGDEF family protein [Vibrio cholerae M66-2] gi|229506273|ref|ZP_04395782.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae BX 330286] gi|229509607|ref|ZP_04399089.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae B33] gi|229516570|ref|ZP_04406017.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae RC9] gi|229605823|ref|YP_002876527.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae MJ-1236] gi|298499353|ref|ZP_07009159.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|9657965|gb|AAF96459.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126510195|gb|EAZ72789.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|126519627|gb|EAZ76850.1| GGDEF family protein [Vibrio cholerae B33] gi|146314027|gb|ABQ18567.1| GGDEF family protein [Vibrio cholerae O395] gi|227011267|gb|ACP07478.1| GGDEF family protein [Vibrio cholerae M66-2] gi|227015393|gb|ACP11602.1| GGDEF family protein [Vibrio cholerae O395] gi|229346451|gb|EEO11422.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae RC9] gi|229353557|gb|EEO18495.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae B33] gi|229356624|gb|EEO21542.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae BX 330286] gi|229372309|gb|ACQ62731.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae MJ-1236] gi|297541334|gb|EFH77385.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 469 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND FG Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464 >gi|153821080|ref|ZP_01973747.1| ggdef family protein [Vibrio cholerae B33] gi|254850122|ref|ZP_05239472.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255746303|ref|ZP_05420250.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262158184|ref|ZP_06029302.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|262169217|ref|ZP_06036910.1| GGDEF family protein [Vibrio cholerae RC27] gi|126521454|gb|EAZ78677.1| ggdef family protein [Vibrio cholerae B33] gi|254845827|gb|EET24241.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255736057|gb|EET91455.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262022498|gb|EEY41206.1| GGDEF family protein [Vibrio cholerae RC27] gi|262030062|gb|EEY48708.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|327485931|gb|AEA80337.1| GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 338 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGL N AF + +L +++S++ DID+FK +NDN+GH GD++I ++ +L Sbjct: 182 DSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 241 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA A S + A A +R+ IE + + SG S+ IT S Sbjct: 242 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITAS 301 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E+ + + ++I RAD LY AK GRNRV+ Sbjct: 302 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 336 >gi|313632650|gb|EFR99631.1| ggdef domain-containing protein [Listeria seeligeri FSL N1-067] gi|313637209|gb|EFS02726.1| ggdef domain-containing protein [Listeria seeligeri FSL S4-171] Length = 367 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 + Q + +D L+GL N F S L+++ DIDYFK++ND +GH VG Sbjct: 193 ELQQSTILDPLTGLSNFRHFEQMFDSAFQYAAMKKANLNLIIIDIDYFKRVNDTYGHLVG 252 Query: 152 DKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + V++ S L+ + F + R+GGEEFA S E LA +RK +E + I Sbjct: 253 NSVLSTFSQMLLKISFPPNTVIARIGGEEFAIILPNISASETEHLAEKIRKKVEKIEFPI 312 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 + S+ ITISAGIA ++ ++ ADQALY AK++GRN+V Sbjct: 313 VATGSV-ITISAGIANYNGSNYLTPEALLQAADQALYNAKRNGRNQV 358 >gi|126667151|ref|ZP_01738125.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter sp. ELB17] gi|126628307|gb|EAZ98930.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter sp. ELB17] Length = 319 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 111/236 (47%), Gaps = 35/236 (14%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN---------- 98 L + P G E + +NL TIS L G SG + K + Y+ Sbjct: 94 LLRFRNTRPITGTEEFMYQNL-------TISPLCG-PSGKVEKVCLMIYDVTDIASSKRA 145 Query: 99 ------RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145 ++++LS ID L+GL N ++ + L + Y ++V FDID+FK IND+ Sbjct: 146 LERANDQLAKLSMIDKLTGLFNRGSWENLLDAEFSRHRRYGGNSTLVMFDIDHFKAINDS 205 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH VGDKVI + GR GGEEFA + A + + I Sbjct: 206 FGHLVGDKVIRHTAATTRRHLRHSDSAGRYGGEEFAIILPETDTAGALTICERILSAISR 265 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFS 259 + ++S +I T+S GIA P + + + +ADQA+Y AK+ GRN++V FS Sbjct: 266 ETVTVNSH-NISYTVSMGIAP-LSDSPKNYLAWLEQADQAMYSAKQGGRNQIVTFS 319 >gi|170721106|ref|YP_001748794.1| diguanylate cyclase [Pseudomonas putida W619] gi|169759109|gb|ACA72425.1| diguanylate cyclase [Pseudomonas putida W619] Length = 527 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 14/174 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144 ++L+E NR +Q D L+GL N + +S L + S++ DID+FK+IND Sbjct: 355 NLLQERIGRLNRDAQ---TDPLTGLGNRRSLEFKLSLLEAEGRAFSVIVLDIDHFKRIND 411 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH VGD+V+ L+ + + R GGEEF G+SE A +A LR +++ Sbjct: 412 GHGHDVGDQVLQRLAAIMRGCCREGDLLCRTGGEEFLMLLPGASEAVATAVAQRLRVMVQ 471 Query: 205 NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ I P +TIS G+A +EP + +AD ALY AK+ GRNRV Sbjct: 472 DTAIE----PVGAVTISLGVAHWQAEQEREP-GAALSQADSALYRAKREGRNRV 520 >gi|121726491|ref|ZP_01679755.1| GGDEF family protein [Vibrio cholerae V52] gi|153825419|ref|ZP_01978086.1| ggdef family protein [Vibrio cholerae MZO-2] gi|254224806|ref|ZP_04918422.1| GGDEF family protein [Vibrio cholerae V51] gi|121631086|gb|EAX63463.1| GGDEF family protein [Vibrio cholerae V52] gi|125622869|gb|EAZ51187.1| GGDEF family protein [Vibrio cholerae V51] gi|149740965|gb|EDM55042.1| ggdef family protein [Vibrio cholerae MZO-2] Length = 326 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 +++ +Y I S D L+GLLN H+ I+ N KL I DID+FK I Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+FGH +GD+++ + Q+ FG + R GGEEF +E + + R+ Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 QI + P I ++ SAG + + TI+ AD+ALY AK+ GRN+V C+ + Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306 Query: 262 ENN 264 N Sbjct: 307 CEN 309 >gi|255525464|ref|ZP_05392401.1| response regulator receiver modulated diguanylate cyclase [Clostridium carboxidivorans P7] gi|255510829|gb|EET87132.1| response regulator receiver modulated diguanylate cyclase [Clostridium carboxidivorans P7] Length = 307 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 16/169 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 ++ ++ D L+GL NH+ I L K +S DID+FK+IND +GH G Sbjct: 140 KLKAMAIKDGLTGLYNHTFLIEILEKEIRKHEKKSSSISFAMIDIDHFKKINDVYGHLFG 199 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ LSD L GR GGEEF S ++ L LRK +++++ I Sbjct: 200 DKVLKGLSDILSESVANFGIAGRYGGEEFGIIFTNSDKEGLCNLCEKLRKNVQDNEFQIG 259 Query: 212 SGPSIHITISAGIAERCHKEPI-----STIIYRADQALYVAKKSGRNRV 255 + + ITIS G C KE + II +AD+ALY AK SGRN+V Sbjct: 260 N-DKVKITISIGA---CFKEDVKDLKSDEIIRQADEALYKAKSSGRNKV 304 >gi|152998962|ref|YP_001364643.1| diguanylate cyclase [Shewanella baltica OS185] gi|151363580|gb|ABS06580.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella baltica OS185] Length = 628 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 13/184 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 L+EL ++++ S ID L+G+ N SAF L ++++ DID FK I Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD+ + ++ L P V R GGEEFA ++E A +A +R Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560 Query: 202 IIENSQINIS-SGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + IN G +I +TIS G++ + + + ++ +AD+ALY AK GRN+V F Sbjct: 561 AV--ASINFEWEGVAIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLF 618 Query: 259 SDIE 262 S ++ Sbjct: 619 SSVQ 622 >gi|144898295|emb|CAM75159.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 668 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ Q + D L+GL N + F + + L++V D+D+FKQIND FGHP Sbjct: 498 ERLEQTALHDPLTGLANRTKFRQRFEEEVDRQRRSGKTLTLVAMDLDHFKQINDRFGHPA 557 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ + L V R GGEEF + A LA LR +E + + Sbjct: 558 GDMVLRETAKTLRAQVRQTDLVARFGGEEFLILLPETELIGARHLAESLRLAVEAQDLCL 617 Query: 211 -SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 SG +HIT + GIAE P+S ++ AD+A Y K GRNRV Sbjct: 618 PESGEKLHITGTFGIAESTADAPLSQDALVEAADRAAYRGKNEGRNRV 665 >gi|219847766|ref|YP_002462199.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus aggregans DSM 9485] gi|219542025|gb|ACL23763.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus aggregans DSM 9485] Length = 715 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 83/160 (51%), Gaps = 12/160 (7%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNH A L N+ L+I D+D+FK+IND++GH VGD+V+ + Sbjct: 422 DSLTGLLNHQAVEEELAREFARAERLNQPLAIAIIDLDHFKRINDSYGHVVGDQVLRSFA 481 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS--IH 217 L +GR GGEEF A +S EA L + +R + GP+ Sbjct: 482 RLLQQRLRKSDLIGRHGGEEFLIALPNTSLVEARTLIDTVRSSFAALR---HYGPAGMFS 538 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +T+SAGIA ++ ADQALY AK+ GRNRVV Sbjct: 539 VTLSAGIAGYPQHRSQIGMMQAADQALYQAKREGRNRVVV 578 >gi|89094043|ref|ZP_01166987.1| PAS:GGDEF protein [Oceanospirillum sp. MED92] gi|89081717|gb|EAR60945.1| PAS:GGDEF protein [Oceanospirillum sp. MED92] Length = 334 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 7/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +LS D L+GL N F + L Y+ ++ FFD+D FK++NDN GH GDK Sbjct: 170 KELSITDSLTGLHNSRHFYNQLEDALETARRYHHPFTLCFFDLDDFKKLNDNHGHLTGDK 229 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + T R GGEEFA + + A+++A +R+ ++N Q + G Sbjct: 230 VLETFGTLVRSSLRTLDSGYRYGGEEFAILLPSTDVEGASVVAERVRESLQNYQFVLEGG 289 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++S GI + + + +++RAD ALY AK+ G+N VV Sbjct: 290 EKLQASVSIGITSFKNGDNVQALMHRADSALYEAKRKGKNCVV 332 >gi|262375972|ref|ZP_06069203.1| predicted protein [Acinetobacter lwoffii SH145] gi|262309066|gb|EEY90198.1| predicted protein [Acinetobacter lwoffii SH145] Length = 465 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 80/156 (51%), Gaps = 7/156 (4%) Query: 107 DCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ LLN + IS +++ K LS++ D DYFK IND FGH GD + FL+ Sbjct: 294 DSLTQLLNRRYLNTIISREITFSRKNHTPLSLLAIDADYFKSINDKFGHAAGDLALKFLA 353 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L + R+GGEEF + + E+ A +A +RK IEN IN + G T Sbjct: 354 EALQKYSQGSDYAFRVGGEEFLLLLVDTDEKRALNIAESIRKYIENGMINSAQGQQFKFT 413 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G + AD ALY+AK +GRNRV Sbjct: 414 VSIGCVLYDGHPDYQRFLNAADSALYMAKNNGRNRV 449 >gi|149180040|ref|ZP_01858545.1| YhcK [Bacillus sp. SG-1] gi|148852232|gb|EDL66377.1| YhcK [Bacillus sp. SG-1] Length = 327 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 16/196 (8%) Query: 78 ISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNE 127 IS G+IS I++ L S ++R S D L+GL N F + ++ + NE Sbjct: 126 ISYSAGFISFYIVEYLRRSQALFDRYKSESATDGLTGLNNVRKFDEIFNDLLRTIPNNNE 185 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 KLS+++ DID+FK++ND +GH GD ++ L L + V R GGEEF L Sbjct: 186 KLSLLYLDIDFFKKVNDTYGHQNGDIILKDLGKILQESVRSFDIVSRNGGEEFTVILLDC 245 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQAL 244 A ++ +RK +E+ + ++ G IHITIS GIA C + ++++I AD AL Sbjct: 246 PVDRAKEISEKIRKAVEDHEFTLTDGQIIHITISIGIA--CFNDTTDDVTSLIEDADSAL 303 Query: 245 YVAKKSGRNRVVCFSD 260 Y+AKK+GRNR VC S+ Sbjct: 304 YMAKKTGRNR-VCVSE 318 >gi|24374995|ref|NP_719038.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1] gi|24349727|gb|AAN56482.1|AE015785_5 GGDEF domain protein [Shewanella oneidensis MR-1] Length = 312 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 8/160 (5%) Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S+ D L+GL N +A ++ L +V DID+FK INDNFGH GD V+ Sbjct: 152 SKTDLLTGLANRRQIEDVLAAAMAKSDRTQSSLCVVMCDIDFFKNINDNFGHLCGDDVLK 211 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ QL + R GGEEF + A +L LR +I + S G + Sbjct: 212 IVASQLQHSAQAATCIARWGGEEFLIVLEHVVPESAGVLCEQLRGLIAATDYQ-SYGQHM 270 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G + E + +++ R D+ALY AK GRN+VV Sbjct: 271 QLTMSFGCVQYQANESLQSLLCRVDKALYQAKNGGRNQVV 310 >gi|329905918|ref|ZP_08274296.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327547409|gb|EGF32235.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 1004 Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 93/171 (54%), Gaps = 21/171 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPV 150 +R+ QL+++D L+GLLN + F L + NE+ ++++F DID+FK IND GHPV Sbjct: 830 SRLLQLAQVDSLTGLLNRAGFEQKLAQALSTARNERSLMALLFLDIDHFKSINDTHGHPV 889 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-----SSEQEAAILANDLRKIIEN 205 GD ++ S +L + + RLGG+EF G +E+ A + + +R + + Sbjct: 890 GDALLRAFSGRLSRALRSVDTIARLGGDEFTVIMEGITHTDDAEKTAGKIVDSMRALFK- 948 Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254 G + IT S G+A C +P++ +I +AD LY AK GRN+ Sbjct: 949 -----LEGLPLSITASIGVA-FCDGKPMAAKELIRQADDMLYQAKAGGRNQ 993 >gi|327478666|gb|AEA81976.1| two-component response regulator [Pseudomonas stutzeri DSM 4166] Length = 546 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 77/156 (49%), Gaps = 7/156 (4%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLL H+ L + S+V D+D+FKQ+ND +GH GD VI L+ Sbjct: 386 DSLTGLLKHADIKEQLALEVQRSSRSGKPASVVMLDLDHFKQVNDTYGHAAGDNVIRALA 445 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L +GR GGEEF A S +A + +++R N +T Sbjct: 446 NLLRQRLRRIDSLGRYGGEEFVAVLPECSALQARRIFDEIRVRFAALTFNAGDHQEFRVT 505 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 SAGI E S ++ RADQALY+AK GRN+V Sbjct: 506 FSAGICETDEHSAASVLLERADQALYLAKHQGRNQV 541 >gi|302185635|ref|ZP_07262308.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 796 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/184 (34%), Positives = 92/184 (50%), Gaps = 18/184 (9%) Query: 87 GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 GS+L F+S R+ Q LS D L+G N F + + + LSI Sbjct: 611 GSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLSI 670 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ + Sbjct: 671 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGAQ 730 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A LA LR+ + I G +T S GIA E I ++ RAD +Y AK++G Sbjct: 731 AYQLALSLREELRKQVIE---GVDQVVTGSFGIASWREGEGIDAMLLRADSGVYAAKQAG 787 Query: 252 RNRV 255 R+RV Sbjct: 788 RDRV 791 >gi|221197620|ref|ZP_03570667.1| diguanylate cyclase [Burkholderia multivorans CGD2M] gi|221204293|ref|ZP_03577311.1| diguanylate cyclase [Burkholderia multivorans CGD2] gi|221176459|gb|EEE08888.1| diguanylate cyclase [Burkholderia multivorans CGD2] gi|221184174|gb|EEE16574.1| diguanylate cyclase [Burkholderia multivorans CGD2M] Length = 312 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 13/181 (7%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +E + ++ + + D L+G+ N F + LG Y LS++ FD+D+FK Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRYFETRLGEEFARWQRYGGDLSMLLFDLDHFKA 194 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH VGD V+ + ++ + GR GGEEFA ++ EA +A+ +R Sbjct: 195 INDRFGHAVGDAVLRETARRVAAIVRAQDTFGRFGGEEFALLLPCTNLDEALQVADKVRD 254 Query: 202 IIENSQINISSGPSIHITISAGIAERCHK--EP-ISTIIYRADQALYVAKKSGRNRVVCF 258 I + ++ + G S+ +T S G A C K +P ++ AD ALY AK+ GR+R V + Sbjct: 255 AIGRTTVD-AEGVSVAVTASVGAA--CAKLGQPACDALVNDADAALYRAKRLGRDRSVGY 311 Query: 259 S 259 + Sbjct: 312 A 312 >gi|108759945|ref|YP_632208.1| FHA domain/GGDEF domain-containing protein [Myxococcus xanthus DK 1622] gi|108463825|gb|ABF89010.1| FHA domain/GGDEF domain protein [Myxococcus xanthus DK 1622] Length = 291 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 102/204 (50%), Gaps = 24/204 (11%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------- 118 + N LV I TI YI+G ++ + ++ I +L+ +D L+ + N F Sbjct: 98 LRNGDLVKIGRTI---FKYIAGGNIEAAY--HDEIYRLTTMDGLTQIYNRRYFDEQLDRE 152 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 IS Y LS+V DID+FK +ND +GH GD V+ L+ + R GGE Sbjct: 153 ISRSRRYERMLSLVLLDIDHFKAVNDKYGHLAGDSVLKQLASTVRTKIRREDVFARYGGE 212 Query: 179 EFA----AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEP 232 EFA +L + Q LA +R+++E + I +T+S G+A E H+EP Sbjct: 213 EFAILLPEVSLSGTRQ----LAEKVRRLVEKQRFEFDR-QVIPVTVSVGLAVLEPHHREP 267 Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256 ++ AD+ L+ AK SGRNRVV Sbjct: 268 -GELVRDADEKLFDAKTSGRNRVV 290 >gi|296188601|ref|ZP_06856989.1| diguanylate cyclase (GGDEF) domain protein [Clostridium carboxidivorans P7] gi|296046865|gb|EFG86311.1| diguanylate cyclase (GGDEF) domain protein [Clostridium carboxidivorans P7] Length = 296 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 87/169 (51%), Gaps = 16/169 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 ++ ++ D L+GL NH+ I L K +S DID+FK+IND +GH G Sbjct: 129 KLKAMAIKDGLTGLYNHTFLIEILEKEIRKHEKKSSSISFAMIDIDHFKKINDVYGHLFG 188 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ LSD L GR GGEEF S ++ L LRK +++++ I Sbjct: 189 DKVLKGLSDILSESVANFGIAGRYGGEEFGIIFTNSDKEGLCNLCEKLRKNVQDNEFQIG 248 Query: 212 SGPSIHITISAGIAERCHKEPI-----STIIYRADQALYVAKKSGRNRV 255 + + ITIS G C KE + II +AD+ALY AK SGRN+V Sbjct: 249 N-DKVKITISIGA---CFKEDVKDLKSDEIIRQADEALYKAKSSGRNKV 293 >gi|229124919|ref|ZP_04254095.1| GGDEF domain protein [Bacillus cereus 95/8201] gi|228658549|gb|EEL14213.1| GGDEF domain protein [Bacillus cereus 95/8201] Length = 351 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 S+F + F N++ +I P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F I + N L ++ DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L V P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKRIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPERFIQAADDALYYSKRNGRNQV 347 >gi|254427231|ref|ZP_05040938.1| GGDEF domain protein [Alcanivorax sp. DG881] gi|196193400|gb|EDX88359.1| GGDEF domain protein [Alcanivorax sp. DG881] Length = 409 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 127/263 (48%), Gaps = 46/263 (17%) Query: 34 FFSIFIATVIFIA-NIFLFYI--GLTPFYGLEYILVENLSLVIISI---TISLLLGYISG 87 F+S +++VI I IF + G PF E +LV++S+ ++SL Y+ Sbjct: 149 FYSALVSSVIMIGCMIFSLQLSSGRHPF--------EPSTLVLVSLAFASMSLFGQYVYE 200 Query: 88 SILKELFISYNRISQ--------------LSRIDCLSGLLNHSAFISSLG---------- 123 +L++ F+S + + Q + +D ++G +N S L Sbjct: 201 RLLRQHFLSEHVLFQHRNELHSANLVLENQATVDGMTGCINRRGMESRLSHLYHKLNQNN 260 Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD-QLVVVFGTPMFVGRLGGEEFA 181 E+++++ FDID+FKQ ND +GHP GD+ + ++ L +V FV R GGEEF Sbjct: 261 PDAPERITLMLFDIDFFKQYNDTYGHPAGDECLKKVAGVPLGMVQSDTDFVARYGGEEFV 320 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPI---STII 237 SS +A + A +R +E + S S S +TIS G+A C + ++ Sbjct: 321 ITLTDSSFNDALVFAERMRNRVEQLGLPHSGSRVSQVVTISVGVA--CSDGTAADGAQLL 378 Query: 238 YRADQALYVAKKSGRNRVVCFSD 260 AD+ALY AK +GRNRV S+ Sbjct: 379 KMADEALYQAKGAGRNRVAMMSN 401 >gi|153214347|ref|ZP_01949348.1| GGDEF family protein [Vibrio cholerae 1587] gi|153829495|ref|ZP_01982162.1| GGDEF family protein [Vibrio cholerae 623-39] gi|229514275|ref|ZP_04403736.1| GGDEF family protein [Vibrio cholerae TMA 21] gi|124115404|gb|EAY34224.1| GGDEF family protein [Vibrio cholerae 1587] gi|148875014|gb|EDL73149.1| GGDEF family protein [Vibrio cholerae 623-39] gi|229348255|gb|EEO13213.1| GGDEF family protein [Vibrio cholerae TMA 21] Length = 326 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 +++ +Y I S D L+GLLN H+ I+ N KL I DID+FK I Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+FGH +GD+++ + Q+ FG + R GGEEF +E + + R+ Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 QI + P I ++ SAG + + TI+ AD+ALY AK+ GRN+V C+ + Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306 Query: 262 ENN 264 N Sbjct: 307 CEN 309 >gi|325274524|ref|ZP_08140588.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas sp. TJI-51] gi|324100341|gb|EGB98123.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas sp. TJI-51] Length = 796 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 14/206 (6%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P GL ++ E + + +L GY++ + +L + + +LS D L+G+ N Sbjct: 593 PRAGLRWVRGEA-TPEVGEQGCTLWHGYLTD--ISDLKGVEHELRRLSVTDSLTGIHNRR 649 Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F L + E+ L+++ DID+FK+IND FGH VGD+V+ L ++ Sbjct: 650 YFQERLKNELERAQRDGQALAVIMLDIDHFKRINDRFGHAVGDRVLRSLCQRIGQRLRRT 709 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 RLGGEEF G+ ++A +LA +L + + N ++ +T S G+A Sbjct: 710 DVFCRLGGEEFMVLCPGTDAEQARVLALELWQGVRNDPVDGVG----QVTASFGVAGWRP 765 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 E ++ RAD +Y AK++GR+RV Sbjct: 766 GEGADALLLRADAGVYAAKQAGRDRV 791 >gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [Herminiimonas arsenicoxydans] gi|133737577|emb|CAL60620.1| conserved hypothetical protein; putative GGDEF domain [Herminiimonas arsenicoxydans] Length = 475 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/133 (39%), Positives = 79/133 (59%), Gaps = 7/133 (5%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGS 187 LS+ F DID+FKQ+ND +GH GDK + LS + + G+ +FV R GGEEF G+ Sbjct: 340 LSVAFLDIDHFKQVNDTYGHAAGDKALIALSRIIATQIRGSDIFV-RYGGEEFVLLFPGT 398 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQA 243 +EA I+ N +R+ + S + + H+TISAG+A E E ++ AD A Sbjct: 399 VAEEALIVLNRIRQAVA-SYCHTYDTATFHLTISAGLAFHMDEDMKHETAEGLLRTADNA 457 Query: 244 LYVAKKSGRNRVV 256 LY AK++GRN+++ Sbjct: 458 LYTAKQNGRNQII 470 >gi|297580138|ref|ZP_06942065.1| GGDEF family protein [Vibrio cholerae RC385] gi|297535784|gb|EFH74618.1| GGDEF family protein [Vibrio cholerae RC385] Length = 326 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 +++ +Y I S D L+GLLN H+ I+ N KL I DID+FK I Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+FGH +GD+++ + Q+ FG + R GGEEF +E + + R+ Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 QI + P I ++ SAG + + TI+ AD+ALY AK+ GRN+V C+ + Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306 Query: 262 ENN 264 N Sbjct: 307 CEN 309 >gi|116254441|ref|YP_770279.1| sensory box GGDEF transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] gi|115259089|emb|CAK10200.1| putative sensory box GGDEF transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] Length = 541 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 10/164 (6%) Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ D L+GL N SA ++ + +S+V FD+D+FK+IND GH GD V+ Sbjct: 353 AQTDLLTGLYNRRGFEVAASALLTQAEHGSRWISVVLFDLDHFKKINDVHGHDAGDAVLR 412 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ F + + R GGEEF A S+ +AAI+A +R IE ++I + SG + Sbjct: 413 HVAGVARENFRSFDLLVRHGGEEFLALLPDSTPDDAAIVAGRVRLAIEAAEIPLPSGDVL 472 Query: 217 HITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVC 257 +T S G A R ++ ++ RAD ALY AK SGRN VV Sbjct: 473 KVTASFGCAGRANEATNRNFEDLVKRADLALYAAKASGRNCVVS 516 >gi|15601603|ref|NP_233234.1| GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|121588182|ref|ZP_01677927.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|153817048|ref|ZP_01969715.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|153822477|ref|ZP_01975144.1| GGDEF family protein [Vibrio cholerae B33] gi|227812414|ref|YP_002812424.1| GGDEF family protein [Vibrio cholerae M66-2] gi|229506004|ref|ZP_04395513.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229510140|ref|ZP_04399620.1| GGDEF family protein [Vibrio cholerae B33] gi|229517730|ref|ZP_04407175.1| GGDEF family protein [Vibrio cholerae RC9] gi|229605535|ref|YP_002876239.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254850005|ref|ZP_05239355.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255746403|ref|ZP_05420350.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262158243|ref|ZP_06029360.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|298499631|ref|ZP_07009437.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|9658278|gb|AAF96746.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547574|gb|EAX57676.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|126512458|gb|EAZ75052.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|126520000|gb|EAZ77223.1| GGDEF family protein [Vibrio cholerae B33] gi|227011556|gb|ACP07767.1| GGDEF family protein [Vibrio cholerae M66-2] gi|229345766|gb|EEO10739.1| GGDEF family protein [Vibrio cholerae RC9] gi|229352585|gb|EEO17525.1| GGDEF family protein [Vibrio cholerae B33] gi|229356355|gb|EEO21273.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229372021|gb|ACQ62443.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254845710|gb|EET24124.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255736157|gb|EET91555.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262029925|gb|EEY48572.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|297541612|gb|EFH77663.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 326 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 +++ +Y I S D L+GLLN H+ I+ N KL I DID+FK I Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+FGH +GD+++ + Q+ FG + R GGEEF +E + + R+ Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 QI + P I ++ SAG + + TI+ AD+ALY AK+ GRN+V C+ + Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306 Query: 262 ENN 264 N Sbjct: 307 CEN 309 >gi|306845025|ref|ZP_07477606.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1] gi|306274657|gb|EFM56446.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1] Length = 381 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 13/164 (7%) Query: 101 SQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 S+ S ID LS + N F + + +I+ D+DYFK++ND +GH GD+V Sbjct: 219 SEQSEIDALSQIYNRRGFDRHVMRRLMRKGPDTPYAIIMSDLDYFKRVNDTYGHDCGDRV 278 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 I L P R+GGEEF G+ A+ A+DL + + + +S SG Sbjct: 279 IEAFGGLLRTHLPKPAVAARMGGEEFVVFMPGAD----AVAAHDLAQTLRTTMTALSFSG 334 Query: 214 PSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T S G+AE E + I RAD ALY AKK+GRNRV Sbjct: 335 DAAEWMPTASFGVAEHRVGEGLYDTIRRADGALYEAKKAGRNRV 378 >gi|146280449|ref|YP_001170602.1| two-component response regulator [Pseudomonas stutzeri A1501] gi|145568654|gb|ABP77760.1| probable two-component response regulator [Pseudomonas stutzeri A1501] Length = 546 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 77/156 (49%), Gaps = 7/156 (4%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLL H+ L + S+V D+D+FKQ+ND +GH GD VI L+ Sbjct: 386 DSLTGLLKHADIKEQLALEVQRSSRSGKPASVVMLDLDHFKQVNDTYGHAAGDNVIRALA 445 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L +GR GGEEF A S +A + +++R N +T Sbjct: 446 NLLRQRLRRIDSLGRYGGEEFVAVLPECSALQARRIFDEIRVRFAALTFNAGDHQEFRVT 505 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 SAGI E S ++ RADQALY+AK GRN+V Sbjct: 506 FSAGICETDEHSAASVLLERADQALYLAKHQGRNQV 541 >gi|90425013|ref|YP_533383.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gi|90107027|gb|ABD89064.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris BisB18] Length = 227 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 11/156 (7%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F LG Y LS++ +DID+FK++ND +GH GD+V+ LS Sbjct: 56 DPLTGLFNRGKFDVVLGYELARAERYGNPLSLIVYDIDHFKEVNDAYGHQAGDRVLVQLS 115 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + R GGEEF + A ++A LR+ IE S +++ IT Sbjct: 116 AIVSAAIRQTDLLVRWGGEEFVLVLPDTDGATARLVAEKLRQAIEQSGFDLAG----TIT 171 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G++ + + +++ R D ALY AK +GRNRV Sbjct: 172 CSFGVSIYVEGDSVDSLVARTDNALYRAKMNGRNRV 207 >gi|254228896|ref|ZP_04922318.1| ggdef domain protein [Vibrio sp. Ex25] gi|151938573|gb|EDN57409.1| ggdef domain protein [Vibrio sp. Ex25] Length = 480 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 88/172 (51%), Gaps = 11/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFG 147 ++L I+ ++ +++ D L+ L N I L N L+++ FDID FK IND +G Sbjct: 297 RQLTIANQQLLEMTLTDSLTKLYNRRHLIEQLALLNHLQRSLTVMVFDIDDFKSINDQYG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+ I +++ + M + R+GGEEFA SE+EA A L K + Sbjct: 357 HLVGDRAIVAVAETAKSMTDERMTLARIGGEEFALVTASLSEREARNFAQMLCKAVYEQP 416 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYR---ADQALYVAKKSGRNRVV 256 I I G +IH++IS G C P T I ADQ +Y K G+NR V Sbjct: 417 I-ILGGQAIHLSISLG----CAYYPEFTHIVNLQDADQLMYQGKSEGKNRAV 463 >gi|291286343|ref|YP_003503159.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] gi|290883503|gb|ADD67203.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] Length = 370 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 11/164 (6%) Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +LS D L+ L N F + Y LS++ D DYFK INDNFGH GDK Sbjct: 207 KELSETDPLTKLYNRRYFFNKADVEFARSKRYGSPLSLIIADADYFKNINDNFGHQTGDK 266 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ ++ L R GGEEF ++ EA +A R I +++ + Sbjct: 267 VLIKTANILNAKLRPSDIACRFGGEEFCILLPETNIIEAQNVAERFRSEISSARFD---N 323 Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +H+T S GIA+ + E +S ++ RAD+ALY AKKSGRN ++ Sbjct: 324 KEVHLTCSFGIAQFKETDEELSHMVSRADEALYKAKKSGRNTII 367 >gi|119776019|ref|YP_928759.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119768519|gb|ABM01090.1| GGDEF domain protein protein [Shewanella amazonensis SB2B] Length = 424 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 8/162 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 + +L+ D L+G+ N SAF S + K + I+ D+D+FK IND FGH G Sbjct: 247 ELEKLAYTDGLTGIANRSAFFSRAEAELRKSHRLSYDVGILMLDLDHFKSINDTFGHEAG 306 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++D + GR+GGEEFA G+ + LA L+ + N+ ++ Sbjct: 307 DNVLKLVADTISTCLREIDMFGRVGGEEFAILVPGTDKFGMQALAERLKSAVSNTDVSFL 366 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I++S G + E + + + RAD+ LY AK++GRN Sbjct: 367 DAEK-KISVSIGYTKIYPNESLKSALKRADENLYSAKRNGRN 407 >gi|329897316|ref|ZP_08272034.1| GGDEF domain protein [gamma proteobacterium IMCC3088] gi|328921247|gb|EGG28646.1| GGDEF domain protein [gamma proteobacterium IMCC3088] Length = 488 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 97/182 (53%), Gaps = 8/182 (4%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134 LG + ++L + +R+++ +R D L+ LLN F I+++ + LS++ Sbjct: 296 LGELVNERTQQLRDANSRLARHAREDALTQLLNRRGFQESAEQIIANVQAQGSTLSLILC 355 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+D+FK+IND +GH VGD+V+ L+ L + +GR GGEEF S A Sbjct: 356 DVDHFKRINDRYGHAVGDRVLQHLARHLGLNIRDVDILGRWGGEEFILVLPDLSLSGAQT 415 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 LA L + SQI G + +T++ G+A+ + + ++I RAD ALY K GR + Sbjct: 416 LAQRLCDSLP-SQIFRIDGIRLGLTMTFGVAQWRQGDTLESLIARADVALYEGKTRGRCQ 474 Query: 255 VV 256 VV Sbjct: 475 VV 476 >gi|300703321|ref|YP_003744923.1| signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum CFBP2957] gi|299070984|emb|CBJ42293.1| putative signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum CFBP2957] Length = 554 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 9/155 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L F++ + E L +V D+D+FK+IND +GH VGD + + Sbjct: 398 DHLTGVLTRRRFLALFETVLTRAHVRGESLVLVLADLDHFKRINDTWGHAVGDLALQRFA 457 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V + +GRLGGEEFA ++ ++AA + LR I+ + ++ SG + +T Sbjct: 458 SLATGVMRSSDLIGRLGGEEFAVVMSSTTLEDAAGVVERLRAIVAEADDSLPSG--LTMT 515 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +S G+ + S ++ RAD ALY AK+SGRNR Sbjct: 516 VSLGMTACRSGDTASEMLRRADLALYRAKESGRNR 550 >gi|264678525|ref|YP_003278432.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262209038|gb|ACY33136.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 255 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 10/172 (5%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GL N F I + E ++ DID+FKQIND GH GD V+ Sbjct: 44 LSLRDPLTGLANRRHFRSVIEREIDRVARSGETALLLMLDIDHFKQINDEHGHIAGDMVL 103 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L + + R GGEEFA + +A LR+ IE++ I +SSG S Sbjct: 104 QSVAQTLSEIIRPMDTLARFGGEEFAIVLPVCPAHQGRAVAERLRQAIESNSIALSSGQS 163 Query: 216 IHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + +T+S G A++ + RAD+ LY+AK +GRN VC D ++T Sbjct: 164 LKVTVSIGGVYAQQWIRSTAQLWTERADRQLYLAKSAGRN-CVCVEDPPDST 214 >gi|194431836|ref|ZP_03064126.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae 1012] gi|194419744|gb|EDX35823.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae 1012] gi|320179757|gb|EFW54705.1| hypothetical protein SGB_03079 [Shigella boydii ATCC 9905] Length = 374 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 210 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 267 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 268 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 326 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 327 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 363 >gi|323495196|ref|ZP_08100280.1| protein kinase [Vibrio brasiliensis LMG 20546] gi|323310555|gb|EGA63735.1| protein kinase [Vibrio brasiliensis LMG 20546] Length = 1679 Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 84/163 (51%), Gaps = 15/163 (9%) Query: 103 LSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 LS D L+GL N H A G + +SI+ DID+FK IND FGH VGDKV Sbjct: 1519 LSTTDQLTGLYNRRYVEERIHEALRQEPGDGSTPVSILMLDIDHFKSINDQFGHDVGDKV 1578 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIENSQINISSG 213 I +S + + GR GGEEF + S+ E A+ A L II + Sbjct: 1579 IVNVSGSIRKSVRSVDIPGRWGGEEFIVLCM--SDLEGAVSNAEKLGNIIAEQ----DNS 1632 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P +T+S G+ ++ + +++ R D+ALY AK SGRN+++ Sbjct: 1633 PVGQVTVSIGVTSLLSQDTVDSLLTRVDKALYQAKNSGRNQII 1675 >gi|299530973|ref|ZP_07044386.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298720930|gb|EFI61874.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 253 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 87/172 (50%), Gaps = 10/172 (5%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GL N F I + E ++ DID+FKQIND GH GD V+ Sbjct: 42 LSLRDPLTGLANRRHFRSVIEREIDRVARSGETALLLMLDIDHFKQINDEHGHIAGDMVL 101 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L + + R GGEEFA + +A LR+ IE++ I +SSG S Sbjct: 102 QSVAQTLSEIIRPMDTLARFGGEEFAIVLPVCPAHQGRAVAERLRQAIESNSIALSSGQS 161 Query: 216 IHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + IT+S G A++ + RAD+ LY+AK +GRN VC D ++T Sbjct: 162 LKITVSIGGVYAQQWIRSTAQLWTERADRQLYLAKSAGRN-CVCVEDPPDST 212 >gi|295689530|ref|YP_003593223.1| diguanylate cyclase [Caulobacter segnis ATCC 21756] gi|295431433|gb|ADG10605.1| diguanylate cyclase [Caulobacter segnis ATCC 21756] Length = 353 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 19/186 (10%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138 S S ++ L ++ + + D L+ L N AF L L + DID+ Sbjct: 162 STSEVERLREHLEQVRREATTDGLTNLANRKAFDEELDRACAEADRQGTPLCLAVLDIDH 221 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-------AAALGSSEQE 191 FK ND +GH GD+VI +++ + V P F R GGEEFA +A + +S +E Sbjct: 222 FKGFNDTWGHQTGDQVIRYVASVIGRVAAPPRFAARYGGEEFAMIFPRENSAVIAASLEE 281 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + + ++++ N G ITIS+G AER E +I+ RAD ALY +K++G Sbjct: 282 IRVEVSS--RMLKRRSTNEDLGA---ITISSGFAERRPGESGHSIMERADAALYASKRNG 336 Query: 252 RNRVVC 257 RNRV Sbjct: 337 RNRVTA 342 >gi|86749641|ref|YP_486137.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] gi|86572669|gb|ABD07226.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] Length = 350 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 9/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140 S + ++ + + +L+ D ++G+ N F++ Y LS + DID+FK Sbjct: 149 SDVTDIVRNAEELERLATTDGMTGIFNRRHFLTLADREWARARRYGRPLSCLMIDIDHFK 208 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND+FGH VGD +I L+ + R+GGEEFA + +A +A LR Sbjct: 209 SINDDFGHQVGDDMIVHLAKLARDCKRDCDVLARIGGEEFALLLPETDLPQALAVAERLR 268 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 + S + ++SG S+ T+S G A + IS ++ AD+ALY AK GRNRVVC Sbjct: 269 GEVAASSLLMASG-SVRATVSIGAATSAATIDGISDLMRAADRALYEAKHGGRNRVVC 325 >gi|78484802|ref|YP_390727.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78363088|gb|ABB41053.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2] Length = 349 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 99/178 (55%), Gaps = 9/178 (5%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLS---IVFFDIDY 138 S I++ L ++ + +++ D L+ + N F + + NEK S ++ DID+ Sbjct: 167 SAEIMR-LKKELDKATAIAKTDELTNIPNRRGFNEIIENMMKEANEKQSSFALLVLDIDF 225 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK++ND +GH VGD ++ +L+ L + R+GGEEF A +S A LAN Sbjct: 226 FKKVNDTYGHLVGDSILRYLAKSLHNETKGKDSIARIGGEEFVAILPSTSYDSALKLANT 285 Query: 199 LRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R+ I + +++ + + I +TIS G+A E + ++ RAD+ LY+AK +GRNRV Sbjct: 286 IREKIASRPLHVKNNANPITLTISIGVAMFQLNETLDSLFTRADKCLYMAKSNGRNRV 343 >gi|46580215|ref|YP_011023.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|120602400|ref|YP_966800.1| diguanylate cyclase [Desulfovibrio vulgaris DP4] gi|46449632|gb|AAS96282.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120562629|gb|ABM28373.1| diguanylate cyclase [Desulfovibrio vulgaris DP4] gi|311233799|gb|ADP86653.1| diguanylate cyclase [Desulfovibrio vulgaris RCH1] Length = 487 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 11/172 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147 + Y I + D L+ L N +F L Y ++++ DID+FK +ND +G Sbjct: 304 VVYREIKLQADHDALTQLHNRRSFDHRLAEEVDRHQRYGMPMTLLMLDIDHFKAVNDTYG 363 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 HP GD V+ ++ + T F R GGEEF + + I A LRK + +S+ Sbjct: 364 HPAGDAVLREVAQTMRNACRTTDFAARYGGEEFCVILPHTDGKCGRIFAERLRKRLASSR 423 Query: 208 INISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 + + G +I +T+S G+A P+S ++ AD ALY AK +GRN +VC Sbjct: 424 VEV-DGKTIAVTVSIGLATLSAAAPLSPERLVCEADGALYAAKAAGRN-IVC 473 >gi|119898350|ref|YP_933563.1| REC/GGDEF-domain-containing protein [Azoarcus sp. BH72] gi|119670763|emb|CAL94676.1| probable REC/GGDEF-domain containing protein [Azoarcus sp. BH72] Length = 325 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 13/184 (7%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141 + ++L + +++LS +D L+G+ N F +L ++++ D+D FKQ Sbjct: 131 VTRKLDEANRELTRLSSVDGLTGIPNRRRFDETLLREWRRAARTGHPIALLVADVDSFKQ 190 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND +GH VGD+ + ++ L P V R GGEEFAA +S + AA +A +R Sbjct: 191 FNDGYGHQVGDECLKAVARTLEQRLRRPTDLVARYGGEEFAAILPETSVEGAAAVAETMR 250 Query: 201 KIIENSQIN---ISSGP--SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E+ I +SGP SI I ++A + R + ++ AD ALY AK +GRNRV Sbjct: 251 AGVESLCITHRFSTSGPVVSISIGVAAIVPARGDENGFVALLKSADDALYRAKAAGRNRV 310 Query: 256 VCFS 259 V S Sbjct: 311 VTHS 314 >gi|269961820|ref|ZP_06176177.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833398|gb|EEZ87500.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 543 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 15/169 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++ L+ D L+ L N A I+ + ++ S++ D+DYFK +ND FGH VG Sbjct: 378 KLTWLAMYDPLTNLFNRRALINQVHQELVNKAMHSHSTSLILIDLDYFKAVNDTFGHDVG 437 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK--IIENSQIN 209 D+V+ ++D L + R GGEEF +S +++ +A +L++ +EN Sbjct: 438 DQVLMHVADFLSANVRKQDLIARWGGEEFVILLRDTSIEQSEQIATNLQEKMTLEN---- 493 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 P +T SAG+A + +I AD+ALY AKKSGRN V + Sbjct: 494 --FSPVTSMTFSAGVATLSAGQSFDDLIANADKALYTAKKSGRNCVKSW 540 >gi|238755553|ref|ZP_04616891.1| Diguanylate cyclase [Yersinia ruckeri ATCC 29473] gi|238706233|gb|EEP98612.1| Diguanylate cyclase [Yersinia ruckeri ATCC 29473] Length = 376 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 3/186 (1%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS 130 +S T+ L + Y + + + +Y + + ID L+ L N ++ +++ L + Sbjct: 164 LSSTLCLAICYHALNFKERHIHAYFSMKDRANIDNLTRLNNRASVDFYLAQLHAQRRACG 223 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D FK INDN+GH +GD+++ + L FVGR GGEEF + Sbjct: 224 LLLMDLDKFKAINDNYGHAIGDQILTSVGAILKQTVRCLDFVGRFGGEEFIVITESHHPE 283 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +A LR+ +E ++ ++ G +H+TIS G + + I AD ALY AK Sbjct: 284 HIKKIAECLRENVEQLKVTLNDGREMHVTISIGASLYLPGMSMLKAIEMADDALYQAKNQ 343 Query: 251 GRNRVV 256 GRN+VV Sbjct: 344 GRNQVV 349 >gi|196036155|ref|ZP_03103555.1| GGDEF domain protein [Bacillus cereus W] gi|196041011|ref|ZP_03108308.1| diguanylate cyclase (GGDEF) domain protein [Bacillus cereus NVH0597-99] gi|218906595|ref|YP_002454429.1| GGDEF domain protein [Bacillus cereus AH820] gi|228949140|ref|ZP_04111410.1| GGDEF domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094525|ref|ZP_04225594.1| GGDEF domain protein [Bacillus cereus Rock3-42] gi|301056881|ref|YP_003795092.1| hypothetical protein BACI_c54090 [Bacillus anthracis CI] gi|195991322|gb|EDX55290.1| GGDEF domain protein [Bacillus cereus W] gi|196028179|gb|EDX66789.1| diguanylate cyclase (GGDEF) domain protein [Bacillus cereus NVH0597-99] gi|218537650|gb|ACK90048.1| GGDEF domain protein [Bacillus cereus AH820] gi|228688909|gb|EEL42739.1| GGDEF domain protein [Bacillus cereus Rock3-42] gi|228810581|gb|EEM56932.1| GGDEF domain protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|300379050|gb|ADK07954.1| conserved hypothetical protein, GGDEF domain in C-terminal region [Bacillus cereus biovar anthracis str. CI] Length = 351 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 S+F + F N++ +I P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F I + N L ++ DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L V P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|152968104|ref|YP_001363888.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] gi|151362621|gb|ABS05624.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] Length = 490 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 23/192 (11%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN------HSAFISSLG 123 SL ++++ ++ + +L++L R+ ++R D L+GL N H A + G Sbjct: 303 SLALVALVVARVW-----DLLQQLRRQSQRLEAMARTDPLTGLANRRTLDHHLARVCRPG 357 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + E + + D+D+FK ND+ GH GD ++ S G + R GGEEF A Sbjct: 358 TPGE-VVLALLDLDHFKAYNDSRGHQAGDDLLRAASAAWTAHLGPRGLLARWGGEEFVAV 416 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 + S + A L ++LR ++ Q T S G++ EP + + RAD Sbjct: 417 VVDESVERATALLDELRALVPEGQ-----------TCSVGVSRWDRAEPPAEALRRADAF 465 Query: 244 LYVAKKSGRNRV 255 LY AK +GR+R+ Sbjct: 466 LYAAKAAGRDRL 477 >gi|70732377|ref|YP_262133.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68346676|gb|AAY94282.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5] Length = 507 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 14/179 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 L+ + +++L+ +D L+GL N LG+ N LS++ D+D+FK Sbjct: 321 LRRRQSAEQELARLAAVDALTGLANRRTLDQVLGNEWSRARRANLPLSLLMVDVDHFKSF 380 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGHP+GD+ + ++ + G P R GGEEFA G+ AA+LA +R Sbjct: 381 NDRFGHPLGDQALRAVAQSIGACVGRPSDLAARYGGEEFAVILPGTDSAGAAVLAEKIRT 440 Query: 202 IIEN-SQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257 I I+ + P +T+S GI I + AD+ALY AK SGRNRVV Sbjct: 441 SIAALPAISEHAAP---LTVSIGINTWSGNADIGLEQWVSDADKALYQAKYSGRNRVVS 496 >gi|304396473|ref|ZP_07378354.1| diguanylate cyclase [Pantoea sp. aB] gi|304355982|gb|EFM20348.1| diguanylate cyclase [Pantoea sp. aB] Length = 365 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 7/179 (3%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQIND 144 ++ +L+ S LS +D L+GL N + L + E + ++ DID+FK ND Sbjct: 176 LMHQLYEEKETFSDLSMLDPLTGLYNRRGLKNRLDNILENHAGSHYVLLLDIDHFKAYND 235 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH +GD+ +A +S + + V R GGEEF + A LA +R+ + Sbjct: 236 NYGHAMGDQALARVSVAIRDAVRSRDVVTRYGGEEFLVLMTNVNSSIAMKLAERIRQYVL 295 Query: 205 NSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + +I + S H+TISAGIA + + AD ALYVAK GRN ++ + D+ Sbjct: 296 DLEIPHLFNETVSTHVTISAGIAP-IYDNDFDQAVANADSALYVAKNQGRNTILAWEDL 353 >gi|300117932|ref|ZP_07055699.1| GGDEF domain protein [Bacillus cereus SJ1] gi|298724796|gb|EFI65471.1| GGDEF domain protein [Bacillus cereus SJ1] Length = 351 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 S+F + F N++ +I P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F I + N L ++ DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L V P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 347 >gi|153836385|ref|ZP_01989052.1| diguanylate cyclase (GGDEF) domain containing protein [Vibrio parahaemolyticus AQ3810] gi|149750287|gb|EDM61032.1| diguanylate cyclase (GGDEF) domain containing protein [Vibrio parahaemolyticus AQ3810] Length = 456 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 10/148 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GLLN F S + +L S++ D D K+IND +GH VGD+VI ++D Sbjct: 308 DDLTGLLNRRVFKDS--EFKRRLKTAPYSVIAIDGDRIKRINDRYGHHVGDEVIEIIADA 365 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + VF T ++ R GG+EF A G S ++++LA LR +++++++ I +++S Sbjct: 366 MRKVFRTSDYLVRTGGDEFIAILPGCSISQSSMLAKKLRSVVKDNRLKT---LDIEVSVS 422 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKK 249 G+A E + +I RAD+ LY KK Sbjct: 423 TGVAANESHESLQDVIVRADEDLYEMKK 450 >gi|209518928|ref|ZP_03267739.1| diguanylate cyclase [Burkholderia sp. H160] gi|209500651|gb|EEA00696.1| diguanylate cyclase [Burkholderia sp. H160] Length = 414 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 91/180 (50%), Gaps = 21/180 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QL D L+GL N F L Y+ ++ +F DID FK IND GH Sbjct: 233 ERLKQLGMTDSLTGLANRRYFDERLREELMRAVRYHAPVACLFIDIDGFKLINDTHGHQT 292 Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD+ +A ++ Q V + T V R GGEEF AA L +A +A +R +EN Sbjct: 293 GDRALAEVAACVRQQVRLGDT---VARYGGEEF-AALLQGDRADALTVAERVRSAVENLD 348 Query: 208 INISSGPSIHITISAGIAER----CHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSD 260 + G I +T+S G+A R E +S ++ AD+A+Y+AK++GRNR+ D Sbjct: 349 VRDEHGERIALTVSIGVAARVVSGTSAEAMSLGQAMMDEADRAMYLAKRNGRNRIEAHVD 408 >gi|150397247|ref|YP_001327714.1| diguanylate cyclase [Sinorhizobium medicae WSM419] gi|150028762|gb|ABR60879.1| diguanylate cyclase [Sinorhizobium medicae WSM419] Length = 438 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 8/161 (4%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G L+ A + + + + + D+D+FKQIND +GH GD +A + Sbjct: 248 DGLTGALSRGALMEEGEQIFAECLTRRRPAAFLLLDLDFFKQINDQYGHACGDMALAHFA 307 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D + +GR+GGEEF +E++A LA ++ +I+ + S I +T Sbjct: 308 DTVSTFLAGRGVLGRIGGEEFGIVLPDHTEEQAKALAEEICRIVRETPAG-RSHQRIRLT 366 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S GIA E I+ ++ RAD ALY +K GR+R D Sbjct: 367 VSIGIAAATAHETIADVMIRADLALYDSKADGRDRCTIARD 407 >gi|30265434|ref|NP_847811.1| GGDEF domain-containing protein [Bacillus anthracis str. Ames] gi|47530994|ref|YP_022343.1| GGDEF domain-containing protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49188252|ref|YP_031505.1| GGDEF domain-containing protein [Bacillus anthracis str. Sterne] gi|65317396|ref|ZP_00390355.1| COG2199: FOG: GGDEF domain [Bacillus anthracis str. A2012] gi|165871271|ref|ZP_02215920.1| GGDEF domain protein [Bacillus anthracis str. A0488] gi|167635791|ref|ZP_02394101.1| GGDEF domain protein [Bacillus anthracis str. A0442] gi|167640369|ref|ZP_02398633.1| GGDEF domain protein [Bacillus anthracis str. A0193] gi|170688218|ref|ZP_02879429.1| GGDEF domain protein [Bacillus anthracis str. A0465] gi|170708020|ref|ZP_02898468.1| GGDEF domain protein [Bacillus anthracis str. A0389] gi|177651838|ref|ZP_02934421.1| GGDEF domain protein [Bacillus anthracis str. A0174] gi|190568904|ref|ZP_03021806.1| GGDEF domain protein [Bacillus anthracis Tsiankovskii-I] gi|227818183|ref|YP_002818192.1| GGDEF domain protein [Bacillus anthracis str. CDC 684] gi|228930423|ref|ZP_04093424.1| GGDEF domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229600552|ref|YP_002869626.1| GGDEF domain protein [Bacillus anthracis str. A0248] gi|254687144|ref|ZP_05151002.1| GGDEF domain protein [Bacillus anthracis str. CNEVA-9066] gi|254724073|ref|ZP_05185858.1| GGDEF domain protein [Bacillus anthracis str. A1055] gi|254735535|ref|ZP_05193242.1| GGDEF domain protein [Bacillus anthracis str. Western North America USA6153] gi|254742200|ref|ZP_05199887.1| GGDEF domain protein [Bacillus anthracis str. Kruger B] gi|254755889|ref|ZP_05207921.1| GGDEF domain protein [Bacillus anthracis str. Vollum] gi|254761601|ref|ZP_05213621.1| GGDEF domain protein [Bacillus anthracis str. Australia 94] gi|30260112|gb|AAP29297.1| diguanylate cyclase (GGDEF) domain protein [Bacillus anthracis str. Ames] gi|47506142|gb|AAT34818.1| GGDEF domain protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49182179|gb|AAT57555.1| GGDEF domain protein [Bacillus anthracis str. Sterne] gi|164712938|gb|EDR18466.1| GGDEF domain protein [Bacillus anthracis str. A0488] gi|167511589|gb|EDR86971.1| GGDEF domain protein [Bacillus anthracis str. A0193] gi|167528900|gb|EDR91657.1| GGDEF domain protein [Bacillus anthracis str. A0442] gi|170126993|gb|EDS95872.1| GGDEF domain protein [Bacillus anthracis str. A0389] gi|170667911|gb|EDT18663.1| GGDEF domain protein [Bacillus anthracis str. A0465] gi|172082542|gb|EDT67606.1| GGDEF domain protein [Bacillus anthracis str. A0174] gi|190559971|gb|EDV13954.1| GGDEF domain protein [Bacillus anthracis Tsiankovskii-I] gi|227003653|gb|ACP13396.1| diguanylate cyclase (GGDEF) domain protein [Bacillus anthracis str. CDC 684] gi|228829270|gb|EEM74906.1| GGDEF domain protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229264960|gb|ACQ46597.1| GGDEF domain protein [Bacillus anthracis str. A0248] Length = 351 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 S+F + F N++ +I P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F I + N L ++ DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L V P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPERFIQAADDALYYSKRNGRNQV 347 >gi|261821129|ref|YP_003259235.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] gi|261605142|gb|ACX87628.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] Length = 470 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 73/130 (56%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N LSI DID+FK +ND +GH GD ++ +++ L +V R GGEEF + Sbjct: 336 NTPLSIAMIDIDHFKSVNDTYGHAAGDSILKRIAEILYESTRNSDYVFRYGGEEFMIVLI 395 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 + + A + LRK I++ I++ +G S+ +TISAGIA +I AD ALY Sbjct: 396 ETPKVAAYTIIERLRKKIQDHTIHLQNGESVTMTISAGIAVYSGHPDYECLIKAADDALY 455 Query: 246 VAKKSGRNRV 255 AK +GRNR+ Sbjct: 456 QAKANGRNRI 465 >gi|82544130|ref|YP_408077.1| hypothetical protein SBO_1640 [Shigella boydii Sb227] gi|209918803|ref|YP_002292887.1| hypothetical protein ECSE_1612 [Escherichia coli SE11] gi|81245541|gb|ABB66249.1| conserved hypothetical protein [Shigella boydii Sb227] gi|209912062|dbj|BAG77136.1| conserved hypothetical protein [Escherichia coli SE11] gi|332094880|gb|EGI99922.1| hypothetical protein SD15574_1615 [Shigella dysenteriae 155-74] gi|332095593|gb|EGJ00605.1| hypothetical protein SB359474_1893 [Shigella boydii 3594-74] Length = 315 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 ++ I I +S + I+ S++K++ + + L+++ SGL + A S + L Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DIDYFK INDN+GH GDKV++ + + + G V R+GGEEFA A + Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244 + ++A +RK +E ++++T+S G+ R + + ++ AD L Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCL 294 Query: 245 YVAKKSGRNR 254 Y +KK GRNR Sbjct: 295 YRSKKDGRNR 304 >gi|332091297|gb|EGI96386.1| hypothetical protein SB521682_1746 [Shigella boydii 5216-82] Length = 315 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 151 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 208 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 209 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 267 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 268 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 304 >gi|291279016|ref|YP_003495851.1| hypothetical protein DEFDS_0613 [Deferribacter desulfuricans SSM1] gi|290753718|dbj|BAI80095.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 324 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N F S L + EK+ ++FFDID+FK+IND +GH +GD V+ +LS Sbjct: 170 DELTQIYNRRYFQSVLKNELEKVKRYNIDSCLLFFDIDFFKKINDTYGHDIGDLVLKYLS 229 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + T R+GGEEFA ++ ++A +A +R I EN +T Sbjct: 230 SLVKNSIRTTDQFFRIGGEEFAIILTNTTLKDATQVAEKIRIITENYTFEKVG----KVT 285 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IS GI + + + ++ RAD+ALY +KKSGRN+V Sbjct: 286 ISIGITKIKNTDTEESLYKRADEALYQSKKSGRNKVTV 323 >gi|149376889|ref|ZP_01894644.1| GGDEF family protein [Marinobacter algicola DG893] gi|149358781|gb|EDM47250.1| GGDEF family protein [Marinobacter algicola DG893] Length = 356 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 17/167 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+G LN S L Y S++ D+DYFK IND +GH GD Sbjct: 174 LTRLATTDPLTGCLNRSQLADILNGQIQMRERYERVSSLILLDLDYFKMINDRWGHLAGD 233 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ L+ ++ + R+GGEEF + +++A +A +L +IS+ Sbjct: 234 KVLQELTQRIGRRLRESDRLFRIGGEEFMLVLPETRQKDADKVAREL-------LTSISA 286 Query: 213 GP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P I IT SA +AE E S + RADQALY AK GRN+V+ Sbjct: 287 RPFVEGIQITASASVAEVGKGETWSVWLNRADQALYEAKARGRNQVI 333 >gi|153832862|ref|ZP_01985529.1| ggdef family protein [Vibrio harveyi HY01] gi|148870785|gb|EDL69684.1| ggdef family protein [Vibrio harveyi HY01] Length = 480 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 9/171 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147 ++L ++ ++ +L+ D L+ L N I ++L + L+++ FDID FK IND FG Sbjct: 297 RQLTVANQQLFELTLTDPLTKLYNRRHLIERLATLSNVRRNLTVMVFDIDDFKSINDQFG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+ I +++ V M + R+GGEEFA S +EA +LA + + S Sbjct: 357 HVVGDQAIIAVANTARTVIDERMTLARIGGEEFALVTASLSAEEAEVLARTICTQVHCSP 416 Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + G +I ++IS G A + ++P + ADQ +Y K +G+NR V Sbjct: 417 VTL-DGQTISVSISLGCAYYPKFDEQP---SLQDADQLMYRGKANGKNRAV 463 >gi|94263584|ref|ZP_01287394.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93456004|gb|EAT06155.1| PAS:GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] Length = 469 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 102/221 (46%), Gaps = 21/221 (9%) Query: 46 ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE--LFISYNRISQL 103 IF +++ TPF G L+ ++ IT I+ +L E L S R +L Sbjct: 258 GEIFHYHVLATPFKGPAGDLIG----IVEHITD------ITSRVLAEQALQKSEQRYKEL 307 Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S +D L+GL N F + Y LS++ DID FK ND +GHP GD+V++ Sbjct: 308 SIVDELTGLFNKRYFNKHLRLEVERARRYQHPLSLLIMDIDNFKHYNDTYGHPAGDRVLS 367 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L L R GGEEF + + LA LR+ + G I Sbjct: 368 ALGGMLRDSMRLNDLACRFGGEEFVVILPMTDGETGLKLAERLRERFAALEFQPLEGVVI 427 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G+A+ C + P +++ RAD+ LY AK +GR+R + Sbjct: 428 RKTMSVGVAQFDCEENP-ESLLARADKNLYAAKAAGRDRSI 467 >gi|289675078|ref|ZP_06495968.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 367 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 92/185 (49%), Gaps = 18/185 (9%) Query: 86 SGSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130 GS+L F+S R+ Q LS D L+G N F + + + LS Sbjct: 181 DGSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQAELKRIDRHGGNLS 240 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 I+ DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ Sbjct: 241 IIMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGA 300 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +A LA LR+ + I G +T S GIA E I ++ RAD +Y AK++ Sbjct: 301 QAYQLALSLREELRKQVIE---GVDQVVTGSFGIASWREGEGIDAMLLRADSGVYAAKQA 357 Query: 251 GRNRV 255 GR+RV Sbjct: 358 GRDRV 362 >gi|218133232|ref|ZP_03462036.1| hypothetical protein BACPEC_01097 [Bacteroides pectinophilus ATCC 43243] gi|217992105|gb|EEC58109.1| hypothetical protein BACPEC_01097 [Bacteroides pectinophilus ATCC 43243] Length = 352 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 111/229 (48%), Gaps = 19/229 (8%) Query: 35 FSIFIATVIFIANIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSILKEL 93 F IFI+ ++ A+ ++P Y G+E ++ E + + L+G+ S LKEL Sbjct: 129 FVIFISCKVYSAD------DISPVYVGMESVIHEGMYTFNAFCVFTALIGF-SVIFLKEL 181 Query: 94 FISYNRI-------SQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQIN 143 S++ I +++++D L+GL N F+ I DID FK +N Sbjct: 182 NRSHDEIIKVNEQLGRMAKLDTLTGLFNRRGIQPFLDICSVSGRNFCIAMCDIDDFKNVN 241 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D++GH VGD+VIA + + V R GGEEF + + I+A+++R+ I Sbjct: 242 DSYGHDVGDEVIARTARTIRECIKPDDHVCRWGGEEFVFLVDSAQMHDGYIIADNIRRTI 301 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 E + + I G + T++ GI E E I I RAD+ +Y K+ + Sbjct: 302 EQNPLEI-FGKIVDFTVTIGITEYKKGETIDQTIIRADEMMYSGKRMAK 349 >gi|116696148|ref|YP_841724.1| hypothetical protein H16_B2212 [Ralstonia eutropha H16] gi|113530647|emb|CAJ96994.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 417 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 18/200 (9%) Query: 70 SLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121 S +++ ++ LLG +++ E +++N +R+D L+GLLN A ++ Sbjct: 196 SAWLLAPLMATLLGLFGFTVMAMEQIVAHNESG--ARVDALTGLLNRGALEMSALSLVAR 253 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + LS + DIDYFKQ+ND FGH GD V+ ++ L GR GGEEF Sbjct: 254 WQRDGQALSCLVIDIDYFKQVNDTFGHHAGDAVLREVAHALDNSRRASDVAGRYGGEEFC 313 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE----RCHKEPISTII 237 + EQ+A+ LAN + + + ++ G H ++S G+A+ KE + ++ Sbjct: 314 ILCPHTDEQQASALANRILRKVRAIELPAGRG---HASVSIGVAQLRGGPGSKEALWRLL 370 Query: 238 YR-ADQALYVAKKSGRNRVV 256 + AD+ALY AK+ GR+R V Sbjct: 371 FADADRALYHAKEHGRDRYV 390 >gi|260901722|ref|ZP_05910117.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|28975404|gb|AAO61798.1| VbsG [Vibrio parahaemolyticus] gi|308108856|gb|EFO46396.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] Length = 456 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 10/148 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GLLN F S + +L S++ D D K+IND +GH VGD+VI ++D Sbjct: 308 DDLTGLLNRRVFKDS--EFKRRLKTAPYSVIAIDGDRIKRINDRYGHHVGDEVIEIIADA 365 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + VF T ++ R GG+EF A G S ++++LA LR +++++++ I +++S Sbjct: 366 MRKVFRTSDYLVRTGGDEFIAILPGCSISQSSMLAKKLRSVVKDNRLKT---LDIEVSVS 422 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKK 249 G+A E + +I RAD+ LY KK Sbjct: 423 TGVAANESHESLQDVIVRADEDLYEMKK 450 >gi|260769458|ref|ZP_05878391.1| GGDEF family protein [Vibrio furnissii CIP 102972] gi|260614796|gb|EEX39982.1| GGDEF family protein [Vibrio furnissii CIP 102972] Length = 369 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 120/239 (50%), Gaps = 22/239 (9%) Query: 41 TVIFIANIFLFYIGL-----TPFYGLEYILVENLSLVIISITISLLLGYISGSIL---KE 92 +++FIA F + GL + +E + ++LV++ IT++L++ Y S L ++ Sbjct: 124 SLLFIAVQFAVFNGLILSNMQTWQPVEDNVASYINLVVVWITLALIIWYFEASRLHAYRK 183 Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + ++ +L+ D L+G+ N + + D+D FK +ND FGH GD Sbjct: 184 MNEANLKLEKLAMTDSLTGVFNRHYIERRIAHSTRPFHVAMIDVDNFKLVNDQFGHVAGD 243 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++D L F VGR GGEEF S++ D+ ++ E ++ +++ Sbjct: 244 GVLKGIADVLKQSFANIGIVGRWGGEEFIVLLTEGSDE-------DIYRLTEQARAKVAA 296 Query: 213 GP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC---FSDIENNT 265 P ++IS G+A + +T + + D+ALY AK G+NR+V + DI++ + Sbjct: 297 TPFGIQAAVSISIGLAHHDLGDYEAT-LRKVDKALYSAKSEGKNRIVSMLQYEDIQHKS 354 >gi|289208600|ref|YP_003460666.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thioalkalivibrio sp. K90mix] gi|288944231|gb|ADC71930.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thioalkalivibrio sp. K90mix] Length = 483 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 10/191 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSI 131 + L+ I+G++ ++ +++ +R+D L+GL N F L LS+ Sbjct: 289 ALRLVADMIAGTLARKQV--EQELARQARVDGLTGLANRREFDHQLERECAARRERSLSL 346 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQ 190 + DID+FK ND FGH GD + ++D + + P VG R GGEEFA ++ + Sbjct: 347 LMIDIDHFKPYNDAFGHQAGDDCLRAVADVIRSILNRPADVGARYGGEEFACVLADTNPE 406 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAK 248 +A +R+ + + +TIS G+ + P+ ++ +AD+ALY AK Sbjct: 407 GGLRVAERIREAVYGLDLKQPDTDEGRVTISIGVCSVHTRWPVEPRALLRQADEALYRAK 466 Query: 249 KSGRNRVVCFS 259 ++GRNRV + Sbjct: 467 RAGRNRVEALT 477 >gi|146282566|ref|YP_001172719.1| sensory box/GGDEF family protein [Pseudomonas stutzeri A1501] gi|145570771|gb|ABP79877.1| sensory box/GGDEF family protein [Pseudomonas stutzeri A1501] Length = 294 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 9/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143 ++L + + +LS D L+GL N + L Y+ + ++V FDID+FK IN Sbjct: 118 RQLQAANAELQRLSSTDRLTGLYNRGHWEEMLRLDYARHRRYDSQAALVMFDIDHFKSIN 177 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGD VI +++ + GR GGEEF + +Q A A LR + Sbjct: 178 DTYGHQVGDAVIQQVAELIRENLRDSDVAGRYGGEEFVVLLPDTDKQGALTFAERLRHAV 237 Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E+ +++ I TIS G+A+ + +I AD ALY +K +GRNRV Sbjct: 238 ESHEVH-HEQHRIRFTISLGVADLSVPSSSHAQLIEWADSALYASKAAGRNRVT 290 >gi|170020149|ref|YP_001725103.1| diguanylate cyclase [Escherichia coli ATCC 8739] gi|169755077|gb|ACA77776.1| diguanylate cyclase [Escherichia coli ATCC 8739] Length = 315 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 ++ I I +S + I+ S++K++ + + L+++ SGL + A S + L Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DIDYFK INDN+GH GDKV++ + + + G V R+GGEEFA A + Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNH 235 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244 + ++A +RK +E ++++T+S G+ R + + ++ AD L Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCL 294 Query: 245 YVAKKSGRNR 254 Y +KK GRNR Sbjct: 295 YRSKKDGRNR 304 >gi|332343204|gb|AEE56538.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 472 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK +NDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSLNDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|30063075|ref|NP_837246.1| hypothetical protein S1698 [Shigella flexneri 2a str. 2457T] gi|56479928|ref|NP_707452.2| hypothetical protein SF1571 [Shigella flexneri 2a str. 301] gi|30041324|gb|AAP17053.1| hypothetical protein S1698 [Shigella flexneri 2a str. 2457T] gi|56383479|gb|AAN43159.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|313649096|gb|EFS13531.1| uncharacterized protein yneF [Shigella flexneri 2a str. 2457T] gi|332767291|gb|EGJ97486.1| diguanylate cyclase domain protein [Shigella flexneri 2930-71] Length = 315 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 151 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 208 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 209 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 267 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 268 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 304 >gi|15801615|ref|NP_287632.1| hypothetical protein Z2182 [Escherichia coli O157:H7 EDL933] gi|15831383|ref|NP_310156.1| hypothetical protein ECs2129 [Escherichia coli O157:H7 str. Sakai] gi|254161574|ref|YP_003044682.1| putative diguanylate cyclase [Escherichia coli B str. REL606] gi|254793068|ref|YP_003077905.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. TW14359] gi|312971715|ref|ZP_07785890.1| uncharacterized protein yneF [Escherichia coli 1827-70] gi|20140987|sp|Q8XAZ4|YNEF_ECO57 RecName: Full=Uncharacterized protein yneF gi|12515141|gb|AAG56244.1|AE005352_10 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361595|dbj|BAB35552.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|209770328|gb|ACI83476.1| hypothetical protein ECs2129 [Escherichia coli] gi|209770330|gb|ACI83477.1| hypothetical protein ECs2129 [Escherichia coli] gi|209770332|gb|ACI83478.1| hypothetical protein ECs2129 [Escherichia coli] gi|209770336|gb|ACI83480.1| hypothetical protein ECs2129 [Escherichia coli] gi|242377266|emb|CAQ32007.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)] gi|253973475|gb|ACT39146.1| predicted diguanylate cyclase [Escherichia coli B str. REL606] gi|253977686|gb|ACT43356.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)] gi|254592468|gb|ACT71829.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str. TW14359] gi|310336312|gb|EFQ01512.1| uncharacterized protein yneF [Escherichia coli 1827-70] gi|315060798|gb|ADT75125.1| predicted diguanylate cyclase [Escherichia coli W] Length = 315 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 ++ I I +S + I+ S++K++ + + L+++ SGL + A S + L Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DIDYFK INDN+GH GDKV++ + + + G V R+GGEEFA A + Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244 + ++A +RK +E ++++T+S G+ R + + ++ AD L Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCL 294 Query: 245 YVAKKSGRNR 254 Y +KK GRNR Sbjct: 295 YRSKKDGRNR 304 >gi|332341747|gb|AEE55081.1| diguanylate cyclase AdrA [Escherichia coli UMNK88] Length = 371 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 25/200 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTP-AESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRN 253 R AD ALY AKK+GRN Sbjct: 346 REWLKSADLALYKAKKAGRN 365 >gi|284043232|ref|YP_003393572.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] gi|283947453|gb|ADB50197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] Length = 769 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 6/163 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPVGDK 153 +++ L+ D L+GL N AF L + ++V D+D+FK IND GH GD+ Sbjct: 326 GQLAYLADHDALTGLYNRRAFQRELEQRTSEDGRGGAVVVIDLDHFKDINDTLGHAAGDE 385 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 VI ++ L +GRLGG+EFA G S +EA + +L +++ + + G Sbjct: 386 VIVRVARLLAKRLRKTDVLGRLGGDEFATLLSGVSREEAEAVIAELLRVVREQSVVVEGG 445 Query: 214 PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254 I +T SAGIA P+S ++ AD A+Y AK++GR+R Sbjct: 446 HPIGLTASAGIALFEGDTPLSGEELLVSADIAMYDAKEAGRDR 488 >gi|207721428|ref|YP_002251869.1| signal transduction protein ggdef domain [Ralstonia solanacearum MolK2] gi|206586587|emb|CAQ17174.1| signal transduction protein ggdef domain [Ralstonia solanacearum MolK2] Length = 534 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 9/155 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L F++ + E L +V D+D+FK+IND +GH VGD + + Sbjct: 378 DHLTGVLTRRRFLALFETVLTRAHVRGESLVLVLADLDHFKRINDTWGHAVGDLALQRFA 437 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V + +GRLGGEEFA ++ ++AA + LR I+ + ++ SG + +T Sbjct: 438 SLATGVMRSSDLIGRLGGEEFAVVMSSTTLEDAAGVVERLRAIVAEADDSLPSG--LTMT 495 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +S G+ + S ++ RAD ALY AK+SGRNR Sbjct: 496 VSLGMTACRSGDTASEMLRRADLALYRAKESGRNR 530 >gi|147678062|ref|YP_001212277.1| signaling protein [Pelotomaculum thermopropionicum SI] gi|146274159|dbj|BAF59908.1| hypothetical signaling protein [Pelotomaculum thermopropionicum SI] Length = 343 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 88/182 (48%), Gaps = 15/182 (8%) Query: 88 SILKELFISYN-RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYF 139 S+ KE N R+ LS D L+G N IS L + LS++ DID+F Sbjct: 155 SVQKEELARVNSRLELLSITDPLTGAYNRRYIISQLEQELAVAARHGLPLSLIMIDIDHF 214 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K++ND GH VGD+V+ + L T +GR GGEEF A + QEA +LA L Sbjct: 215 KKVNDTHGHQVGDEVLKDVVKVLSGCIRTADVLGRYGGEEFVVIAPFTGFQEALVLAERL 274 Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253 R + + G + +TIS G+ E H I ++ RAD+ +Y AK GRN Sbjct: 275 RDTVSRWPFETTYG-FLKLTISLGVTTFNGKEEHYHNSLIDRLLARADEEMYKAKAQGRN 333 Query: 254 RV 255 V Sbjct: 334 LV 335 >gi|150017915|ref|YP_001310169.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] gi|149904380|gb|ABR35213.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] Length = 372 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/130 (40%), Positives = 77/130 (59%), Gaps = 3/130 (2%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ-LVVVFGTPMFVGRLGGEEFAAAALGS 187 LSI+ DID+FK++ND +GH +GDK++ SD L V G +VGR GGEEF + Sbjct: 164 LSIIMADIDFFKKVNDQYGHIIGDKILIDFSDLILKSVRGKSDWVGRFGGEEFIIILNYT 223 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYV 246 + A +A +RK++EN+ N G I IT S G+ E ++ I ++ + D+ LY Sbjct: 224 EAKNAYKVAEKIRKVLENTSFNY-DGIEIKITASFGVYEASDEDVNIYDLLSKVDKNLYK 282 Query: 247 AKKSGRNRVV 256 AK SGRNR + Sbjct: 283 AKASGRNRTI 292 >gi|323947889|gb|EGB43885.1| GGDEF domain-containing protein [Escherichia coli H120] Length = 315 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 ++ I I +S + I+ S++K++ + + L+++ SGL + A S + L Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DIDYFK INDN+GH GDKV++ + + + G V R+GGEEFA A + Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244 + ++A +RK +E ++++T+S G+ R + + ++ AD L Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCL 294 Query: 245 YVAKKSGRNR 254 Y +KK GRNR Sbjct: 295 YRSKKDGRNR 304 >gi|254224741|ref|ZP_04918357.1| GGDEF family protein [Vibrio cholerae V51] gi|125622804|gb|EAZ51122.1| GGDEF family protein [Vibrio cholerae V51] Length = 339 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGL N AF I +L +++S++ DID+FK +NDN+GH GD++I ++ +L Sbjct: 183 DSLSGLYNRRAFDGDIFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQ 242 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA A S + A A +R+ IE + + +G S+ IT S Sbjct: 243 SLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRNGQSVGSITAS 302 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E+ + + ++I RAD LY AK GRNRV+ Sbjct: 303 FGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVM 337 >gi|153802754|ref|ZP_01957340.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|229528298|ref|ZP_04417689.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|262191575|ref|ZP_06049756.1| GGDEF family protein [Vibrio cholerae CT 5369-93] gi|124121711|gb|EAY40454.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|229334660|gb|EEO00146.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|262032540|gb|EEY51097.1| GGDEF family protein [Vibrio cholerae CT 5369-93] gi|327485844|gb|AEA80250.1| GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 326 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 +++ +Y I S D L+GLLN H+ I+ N KL I DID+FK I Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+FGH +GD+++ + Q+ FG + R GGEEF +E + + R+ Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 QI + P I ++ SAG + + TI+ AD+ALY AK+ GRN+V C+ + Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306 Query: 262 ENN 264 N Sbjct: 307 CEN 309 >gi|32471379|ref|NP_864372.1| hypothetical protein RB1357 [Rhodopirellula baltica SH 1] gi|32443220|emb|CAD72051.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 322 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 81/159 (50%), Gaps = 9/159 (5%) Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N AF L + + +++ DID+FK IND GHP+GD V+ Sbjct: 147 ARTDGLTGLFNRRAFDKKLDELFSAYRAGGKSFTLILMDIDHFKMINDTHGHPIGDIVLQ 206 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +S +L V R GGEEFA + AA N LR I N ++ S + Sbjct: 207 QISQRLGHGMQDAEIVSRFGGEEFAILTH-LPIRAAADKINKLRDRIANDPVDAGSA-EL 264 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G++ I I+ RAD+ALY AK GRNRV Sbjct: 265 QVTLSVGLSTPHEDLVIGPIVRRADEALYSAKNMGRNRV 303 >gi|291613091|ref|YP_003523248.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1] gi|291583203|gb|ADE10861.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1] Length = 553 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 20/181 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 ++EL +IS+L R D L+G LN +L ++ +S+ DID FKQ+ Sbjct: 378 IRELENELEQISELVREDQLTGALNRRGLDETLDRELKRSDRSKTPVSVALLDIDNFKQL 437 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILAND 198 ND+ GH GD+ + L+ + VGR GGEEF L ++ + L D Sbjct: 438 NDSLGHLAGDRALIHLTKVIKETLRPADTVGRYGGEEFLIVLPDTGLKAAVEAMQRLQRD 497 Query: 199 LRK--IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 L K + N++ I +T SAG+A R E +I RAD+A+Y AK++G+NRV+ Sbjct: 498 LTKKFFLHNNE-------RILVTFSAGVALRGEDEEAEDLIGRADKAMYQAKQAGKNRVM 550 Query: 257 C 257 Sbjct: 551 T 551 >gi|238023756|ref|YP_002907988.1| diguanylate cyclase [Burkholderia glumae BGR1] gi|237878421|gb|ACR30753.1| Diguanylate cyclase [Burkholderia glumae BGR1] Length = 397 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 9/165 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+ ID L+GLL AFI+ S + +LS+V DID FK+IND +GH G Sbjct: 213 RMERLATIDELTGLLGRRAFIARAEALLDSARAAQSQLSVVILDIDDFKRINDCYGHAAG 272 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ +A ++ + +GR+GGEEF A + + +EAA L N LR ++ S ++ Sbjct: 273 DQTLAHVALTIARETRHGDLLGRIGGEEF-ALLMRTGREEAARLTNRLRALVAASAASVP 331 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G ++ T SAG+ + + +++ + RAD ALY AK +GRN V+ Sbjct: 332 GG-NLACTFSAGVEQIGAGDTLASAMARADGALYAAKANGRNCVM 375 >gi|218885597|ref|YP_002434918.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756551|gb|ACL07450.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 356 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 93/187 (49%), Gaps = 30/187 (16%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL--GSYNEK----LSIVFFDIDYFKQINDNFGHPVGD 152 R+ +L+ D L+GL N AF ++L G K L++V FD+D FK+IND GH +GD Sbjct: 163 RVGELTVTDPLTGLGNRRAFDTALTAGEAAWKGGTALALVLFDVDRFKRINDQHGHRIGD 222 Query: 153 KVIAF---------------LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +V+ L+D+ V R GGEEFA G Q A +A Sbjct: 223 QVLRTVAEVLRRKVDDCNRSLNDEAEGAGECASVVARFGGEEFALVLTGEGAQRAGEIAE 282 Query: 198 DLRKIIENSQINISSGP------SIHITISAGI--AERCHKEPISTIIYR-ADQALYVAK 248 +R +E+ I G + +T+SAG+ A EP++ ++ AD+ALY AK Sbjct: 283 SVRAGLESVNFAIRDGQGHVVEHGVRVTLSAGVAHARPGMPEPLTDALFDLADKALYEAK 342 Query: 249 KSGRNRV 255 + GRNRV Sbjct: 343 REGRNRV 349 >gi|239617412|ref|YP_002940734.1| diguanylate cyclase with GAF sensor [Kosmotoga olearia TBF 19.5.1] gi|239506243|gb|ACR79730.1| diguanylate cyclase with GAF sensor [Kosmotoga olearia TBF 19.5.1] Length = 577 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 12/183 (6%) Query: 81 LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFF 134 +L I+ IL+ E + I S+ D +GL H+ F S L S ++ SI+ Sbjct: 396 MLEIIADQILRVIEDSTRFREILMASKTDLATGLYTHTEFYSVLEKLIKSKEKRFSIIMI 455 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+D FK+IND +GH VGD+VI ++ + R GG+EFA A+ +S+ +A Sbjct: 456 DLDNFKEINDTYGHVVGDQVIEKIARVIRKNLRKKDIGARYGGDEFAVIAMDASKADAMN 515 Query: 195 LANDLRKIIENSQINISSGP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252 +A + K I IS G + +T S GIA E S ++ +AD+ALY AKK+G+ Sbjct: 516 IAKRISKEIR----EISVGQIKMRVTCSMGIASYPFDGESASDLVEKADRALYAAKKAGK 571 Query: 253 NRV 255 N++ Sbjct: 572 NKI 574 >gi|315500124|ref|YP_004088927.1| response regulator receiver modulated diguanylate cyclase [Asticcacaulis excentricus CB 48] gi|315418136|gb|ADU14776.1| response regulator receiver modulated diguanylate cyclase [Asticcacaulis excentricus CB 48] Length = 454 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 19/198 (9%) Query: 75 SITISLLLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNH-------SAFISSL 122 + I LL G I ++ + + R S +L+ D L+GL N + + Sbjct: 256 PVDIQELLARARGQIRRKRYADFLRASLDRSLELAVTDPLTGLNNRRFMDLQLTQLMRRH 315 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI---AFLSDQLVVVFGTPMFVGRLGGEE 179 ++ +S++ DID+FK++ND FGH GD+V+ A Q V P RLGGEE Sbjct: 316 LKTDDPVSLLLLDIDHFKRVNDGFGHDAGDEVLKEFARRVSQNVRAIDMPC---RLGGEE 372 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIY 238 F + A +A +R+ + + ++ G ++ +T+S G++ + + I Sbjct: 373 FVVLMPDTPADAAQTIAERVRQAVAEAPFSLPDGRTLDVTVSVGVSSLLGLGDTLEAFIK 432 Query: 239 RADQALYVAKKSGRNRVV 256 RAD+A+Y AK+SGRNRV+ Sbjct: 433 RADEAVYEAKQSGRNRVI 450 >gi|90020041|ref|YP_525868.1| diguanylate cyclase [Saccharophagus degradans 2-40] gi|89949641|gb|ABD79656.1| diguanylate cyclase [Saccharophagus degradans 2-40] Length = 319 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 9/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++SR D L+GLLN + + S+V FDID+FK IND++GHP G Sbjct: 151 QLHEISRTDGLTGLLNRKTWELDAEQEYKRFKRHEHPCSLVMFDIDHFKNINDSYGHPAG 210 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI + + GR GGEEF + + A ++A +R I+ ++ Sbjct: 211 DEVIRQTAAAVKSCIRDIDIAGRYGGEEFTIVLSDTDTEGALVVAERIRNQIQELTVHYE 270 Query: 212 SGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRVVCFS 259 +I T+S G+A+ + T I AD+ALY AKK+GRN V ++ Sbjct: 271 DF-AIQFTVSLGVAQLTQQMTNRTAWIDCADKALYQAKKNGRNNSVVYT 318 >gi|303249358|ref|ZP_07335586.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] gi|302489233|gb|EFL49195.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] Length = 403 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+G N F + L Y S++ FDID+FK +ND GH GD Sbjct: 239 LTELAVTDQLTGAYNRLKFNQVMGHELKRLDRYGPPFSVIMFDIDHFKIVNDTHGHAAGD 298 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ LS ++ + ++ R GGEEF AA + +A +LA LR ++ ++ Sbjct: 299 AMLRELSRRVSMAVRGVDWLFRYGGEEFVVAAPHTDLDQARVLAEKLRNLVADTPF---- 354 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I TIS G+A+ + +++ R D ALY AK +GRNRVV Sbjct: 355 PHDIPGTISLGVAQAHPGDTPESLMQRVDAALYEAKDTGRNRVVV 399 >gi|323163380|gb|EFZ49207.1| hypothetical protein ECE128010_0457 [Escherichia coli E128010] Length = 315 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 ++ I I +S + I+ S++K++ + + L+++ SGL + A S + L Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DIDYFK INDN+GH GDKV++ + + + G V R+GGEEFA A + Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244 + ++A +RK +E ++++T+S G+ R + + ++ AD L Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRESYRTLTDDFNKLMVEADTCL 294 Query: 245 YVAKKSGRNR 254 Y +KK GRNR Sbjct: 295 YRSKKDGRNR 304 >gi|239907502|ref|YP_002954243.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239797368|dbj|BAH76357.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 300 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 83/163 (50%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++LS D L+GL N A + LG +LS++ FDID+FK +ND +GH GD Sbjct: 139 LARLSTTDMLTGLANRQHTEHLLLAGLGELGRQGRQLSLIMFDIDHFKAVNDRYGHLRGD 198 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+D L + VGR GGEEF G EA +LA LR + + Sbjct: 199 DVLRALADLLRQTVPAGLGVGRWGGEEFLICCSGLGLAEACVLAEKLRLAVAGLDLTGVG 258 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G+AE E T++ R D ALY AK GR+RV Sbjct: 259 ----RLTCSFGVAEARAGESAVTLLARVDNALYAAKGLGRDRV 297 >gi|222148531|ref|YP_002549488.1| GGDEF protein [Agrobacterium vitis S4] gi|221735517|gb|ACM36480.1| GGDEF protein [Agrobacterium vitis S4] Length = 334 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 94/177 (53%), Gaps = 18/177 (10%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKL---SIVFFDIDYFKQ 141 ++ +EL Y RI+ D L+ L N AF ++ L +Y L S++ DID+FK+ Sbjct: 143 AVRREL-DEYKRIAN---TDSLTRLANRRAFDERMAGLFNYPSTLTATSLMLIDIDHFKK 198 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGHPVGDK++A ++ + FV R GGEEFA G + E L +R Sbjct: 199 INDTFGHPVGDKILATVAGVIRANAPRDAFVARAGGEEFAIIVEGMPDTEVFGLCERIRT 258 Query: 202 IIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +E NS+ ++ GP +T+S G A + + + R+D ALY AK +GRN Sbjct: 259 NLENTLFRNSRTGVNYGP---VTVSIGFALAANCQDPGELYSRSDIALYCAKNAGRN 312 >gi|221210503|ref|ZP_03583483.1| diguanylate cyclase [Burkholderia multivorans CGD1] gi|221169459|gb|EEE01926.1| diguanylate cyclase [Burkholderia multivorans CGD1] Length = 312 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 96/181 (53%), Gaps = 13/181 (7%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +E + ++ + + D L+G+ N F + LG Y LS++ FD+D+FK Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRYFETRLGEEFARWQRYGGDLSMLLFDLDHFKA 194 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH VGD V+ + ++ + GR GGEEFA ++ EA +A+ +R Sbjct: 195 INDRFGHAVGDAVLRETARRVAAIVRAQDTFGRFGGEEFALLLPCTNLDEALQVADKVRD 254 Query: 202 IIENSQINISSGPSIHITISAGIAERCHK--EP-ISTIIYRADQALYVAKKSGRNRVVCF 258 I + ++ + G S+ +T S G A C K +P ++ AD ALY AK+ GR+R V + Sbjct: 255 AIGRTPVD-AEGVSVAVTASVGAA--CAKLGQPACDALVNDADAALYRAKRLGRDRSVGY 311 Query: 259 S 259 + Sbjct: 312 A 312 >gi|207742592|ref|YP_002258984.1| signal transduction protein ggdef domain [Ralstonia solanacearum IPO1609] gi|206593986|emb|CAQ60913.1| signal transduction protein ggdef domain [Ralstonia solanacearum IPO1609] Length = 534 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 9/155 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L F++ + E L +V D+D+FK+IND +GH VGD + + Sbjct: 378 DHLTGVLTRRRFLALFETVLTRAHVRGESLVLVLADLDHFKRINDTWGHAVGDLALQRFA 437 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V + +GRLGGEEFA ++ ++AA + LR I+ + ++ SG + +T Sbjct: 438 SLATGVMRSSDLIGRLGGEEFAVVMSSTTLEDAAGVVERLRAIVAEADDSLPSG--LTMT 495 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +S G+ + S ++ RAD ALY AK+SGRNR Sbjct: 496 VSLGMTACRSGDTASEMLRRADLALYRAKESGRNR 530 >gi|153827329|ref|ZP_01979996.1| ggdef family protein [Vibrio cholerae MZO-2] gi|149738749|gb|EDM53091.1| ggdef family protein [Vibrio cholerae MZO-2] Length = 461 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND FG Sbjct: 289 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQARSGSLTLMVFDIDDFKTINDRFG 348 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 349 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 408 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 409 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 456 >gi|24215632|ref|NP_713113.1| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] gi|45657009|ref|YP_001095.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196791|gb|AAN50131.1| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] gi|45600246|gb|AAS69732.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 320 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 50/221 (22%) Query: 84 YISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAFISS------LG 123 Y++G + ++ S +IS+L+ D L+ L N +F LG Sbjct: 108 YVTGRDITDIIESNQKISKLASDLEEANNKLLEQASTDPLTKLKNRRSFNEEINHLIRLG 167 Query: 124 SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + EK +S++ D+D+FK ND FGHP GD+++ L++ + V R GGEEF Sbjct: 168 QHQEKSISLMMIDVDHFKDYNDKFGHPAGDRILIRLAEVFTETLRSCDLVARFGGEEFVV 227 Query: 183 AALGSSEQEAA-----ILANDLRKIIENSQINISSG----------PSIHITISAGIAER 227 A ++E++A ++AN +K ENS I IS G P H +S G Sbjct: 228 ALSDTNEEKAVEVAERLMANVKKKSWENSPITISVGITTLNFNGPVPIYHTDLSTG---- 283 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI--ENNTC 266 II AD+ALY +K +GRN+ S + EN T Sbjct: 284 --------IIEDADRALYRSKANGRNQATHSSQLKTENQTS 316 >gi|325108730|ref|YP_004269798.1| diguanylate cyclase with GAF sensor [Planctomyces brasiliensis DSM 5305] gi|324968998|gb|ADY59776.1| diguanylate cyclase with GAF sensor [Planctomyces brasiliensis DSM 5305] Length = 584 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 18/164 (10%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N +F + E+ S+ FD+D+FK IND +GH GD+V+ + Sbjct: 405 DGLTNLANRRSFDKRIQKEVEQARHTGTECSLCLFDLDHFKSINDTYGHLAGDEVLKQFA 464 Query: 160 DQLVV----VFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 L+ V GT + V R GGEE A G ++Q A ++ +R+ IE + + + G Sbjct: 465 RLLITQSQHVRGTDVPLVARYGGEEMAILLPGVNQQGAMRISEAIRRSIERTSV-LYQGR 523 Query: 215 SIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255 SI +++S GIA C H + + ++I AD+ALY AK++GRN V Sbjct: 524 SIRVSVSVGIA--CFPRHAQTVESLIRAADKALYAAKRAGRNTV 565 >gi|309790983|ref|ZP_07685523.1| diguanylate cyclase [Oscillochloris trichoides DG6] gi|308226956|gb|EFO80644.1| diguanylate cyclase [Oscillochloris trichoides DG6] Length = 382 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 20/196 (10%) Query: 76 ITISLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 + S+LLG++ ++ L + YN + +++ D L+ L N S +L Sbjct: 178 VAASMLLGFLFILARYRDHIQRLQVEYNLLERVAFTDMLTQLPNRSMGHQTLQRQIALCQ 237 Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 LS+ +DID+FK INDN+GH VGD+V+ ++ +LV + R GGEEF Sbjct: 238 RNAMPLSVSIWDIDHFKLINDNYGHDVGDQVLRAIATRLVEELRLSDMLVRWGGEEFLLI 297 Query: 184 ALGSSEQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 ++ A ++ LR+++ I N+S +T S G++ H + + ++ RAD Sbjct: 298 LPNTTLSSALLVIERLRQVLSKQPIINNLS------VTASFGVSCYHHSDTLEQLLQRAD 351 Query: 242 QALYVAKKSGRNRVVC 257 A+Y+AK GRNRVV Sbjct: 352 AAMYLAKAQGRNRVVA 367 >gi|283856456|ref|YP_163100.2| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis subsp. mobilis ZM4] gi|283775460|gb|AAV89989.2| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis subsp. mobilis ZM4] Length = 1045 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 17/175 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL + ++S+L+ D L+GLLN A ++ L ++ +SI D+D+FK+IND Sbjct: 875 ELQQANKQLSELANTDVLTGLLNRRALMAKLSELHQDALLNENAISIAMLDVDHFKKIND 934 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSEQEAAILANDLRK 201 +GH VGD V+ + + F GR GG+EF +A++ S A + N+ K Sbjct: 935 RYGHLVGDDVMRNAASIIRNNIRQEDFAGRYGGDEFIIAISASIEMSRHIAERIRNEFTK 994 Query: 202 IIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ I +G + + IT+S G+ E +E IS + +AD LY AK +GRNRV Sbjct: 995 IV------IKNGETELKITVSIGLFEITTEESISIALDKADSLLYWAKNNGRNRV 1043 >gi|312970479|ref|ZP_07784660.1| diguanylate cyclase domain protein [Escherichia coli 1827-70] gi|310337128|gb|EFQ02266.1| diguanylate cyclase domain protein [Escherichia coli 1827-70] Length = 371 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGGA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AKK+GRNR Sbjct: 346 REWLKSADLALYKAKKAGRNRT 367 >gi|220905592|ref|YP_002480904.1| PAS/PAC sensor-containing diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869891|gb|ACL50226.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 324 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 9/173 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQIN 143 S L + + + S D L+GL LG Y + + D+D+FKQIN Sbjct: 138 SQLDSMITRVRQADESSLTDALTGLYTRKYLDMVLGRYTRLEKKPFCCIMLDVDHFKQIN 197 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+FGH VGD V+ ++ + V R GGEEF GS ++A A +R+ + Sbjct: 198 DSFGHLVGDSVLKDVAQVIRRCVREMDTVCRYGGEEFVVLMPGSLLEQAEQAAERIRRAV 257 Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + SGP S +T+S G +E E +++RAD+ALY AK+SGRNRV Sbjct: 258 SG----MISGPDSRPVTVSLGCSEYEMDEDALQVLHRADKALYGAKRSGRNRV 306 >gi|77456851|ref|YP_346356.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gi|77380854|gb|ABA72367.1| putative GGDEF domain response regulator [Pseudomonas fluorescens Pf0-1] Length = 556 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 12/163 (7%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L N+ LS DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARRENKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + + A + +++R+ ++I+ + P + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIEAAHKVLDEIRQRF--AEIHYPAQPQDLWC 496 Query: 219 TISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSD 260 T SAG+ E H + S ++ +AD+ALY AK GRNRV D Sbjct: 497 TFSAGVVE-MHDDSDSLMMASQADEALYRAKGEGRNRVQTARD 538 >gi|191165177|ref|ZP_03027021.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A] gi|190904949|gb|EDV64654.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A] Length = 472 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFALHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 461 >gi|253688995|ref|YP_003018185.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755573|gb|ACT13649.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 471 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 72/127 (56%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LSI DID+FK +ND +GH GD ++ +++ L +V R GGEEF + + Sbjct: 339 LSIAMIDIDHFKTVNDTYGHAAGDNILKRIAEVLYESTRNSDYVFRYGGEEFMIVLIETP 398 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 + A + LRK I++ I++ +G SI +TISAGIA +I AD ALY AK Sbjct: 399 KVAAHTIIERLRKKIQDHPIHLQNGESITMTISAGIAVYSGHPDYECLIKAADDALYQAK 458 Query: 249 KSGRNRV 255 +GRNR+ Sbjct: 459 ANGRNRI 465 >gi|169634781|ref|YP_001708517.1| GGDEF domain-containing protein [Acinetobacter baumannii SDF] gi|169153573|emb|CAP02748.1| putative membrane protein with GGDEF domain [Acinetobacter baumannii] Length = 397 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 3/167 (1%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 I +LS+ID L+ +LN + + L + +E+ +++ DID+FK+IND +GH GD+V+ Sbjct: 227 IQRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLI 286 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L +GR GGEEF + +A +A R+ ++ I + I Sbjct: 287 EIARCLSENLRNEDIIGRFGGEEFILLLPHTDILQAEKIAERCRQALQELTIFNNQNIQI 346 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 H++ S GI+ +I +ADQALY K SGRN+V F + Sbjct: 347 HVSASFGISSSAFANDPYLVIRQADQALYAVKASGRNKVRTFHQLPQ 393 >gi|262171390|ref|ZP_06039068.1| GGDEF domain protein [Vibrio mimicus MB-451] gi|261892466|gb|EEY38452.1| GGDEF domain protein [Vibrio mimicus MB-451] Length = 352 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 118/265 (44%), Gaps = 30/265 (11%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70 +W C F P F I+ S F+ +++ I G+ Y ++N Sbjct: 98 VWSC-------FVPILFYIFTSARFAFLTSSLFLILQ-----------SGIVYWQLQNEP 139 Query: 71 LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125 L+ S+ + L YI ++ ++ R + L+ D L+ N + +S + Sbjct: 140 LISWSVLLHLSFAYIGIWVVSHVYDQNRRKIENSLLYLASRDPLTSAHNRLSLTTSFQHF 199 Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + LS++ D+D+FK IND FGH GDKV+ + L V G R+GGEEF Sbjct: 200 EQFNDQTTLSLLVIDLDFFKSINDQFGHDTGDKVLIETTRLLAQVVGDNNLY-RIGGEEF 258 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 S ++A + LR II + I + +TIS G+ E + ++ ++ A Sbjct: 259 CVTLFDQSLEQAERVCERLRAII-SQHIFAFGDKRVQVTISIGVCEYQPGDQLNDLLKFA 317 Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265 D LY AKK+GRN+V F + T Sbjct: 318 DIELYRAKKAGRNQVRLFKHAQTQT 342 >gi|152991339|ref|YP_001357061.1| hypothetical protein NIS_1598 [Nitratiruptor sp. SB155-2] gi|151423200|dbj|BAF70704.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 590 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 13/178 (7%) Query: 96 SYNRISQLSRI---DCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 +Y + +L I D L+G+ N + I + +E L + DID+FK+IND F Sbjct: 416 TYRSMEELQEIAYKDPLTGVYNRTLLQDIIHNILRIKRKDEHLILALVDIDHFKKINDEF 475 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+V+ F++ + + +V R+GGEEF S ++ ++ +R+ + Sbjct: 476 GHDTGDEVLQFVAQTIKKRLRSEDYVFRIGGEEFLIVMKTRSIEKVLLILQSIRRYFASH 535 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 P +TIS G+ E E RAD+ALY AK+SGRNR++ + +E++ Sbjct: 536 PAQKLKKP---VTISIGVTEYKPYESFKQAFKRADEALYEAKRSGRNRLI-YKGVEDD 589 >gi|327485587|gb|AEA79993.1| extracellular solute-binding protein, family 3/GGDEF domain protein [Vibrio cholerae LMA3894-4] Length = 461 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND FG Sbjct: 289 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 348 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 349 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 408 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 409 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 456 >gi|325971342|ref|YP_004247533.1| diguanylate cyclase [Spirochaeta sp. Buddy] gi|324026580|gb|ADY13339.1| diguanylate cyclase [Spirochaeta sp. Buddy] Length = 320 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 8/159 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 +++ +S D L+GL N L + + S + FD+D+FK IND +GH GD+V+ Sbjct: 168 KQLTFISEHDWLTGLYNRRKLDRYLLNKDSFTSAILFDLDHFKTINDTYGHQKGDQVLKE 227 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L+D + VGR GGEEF L + +E +A +LR++I Q I Sbjct: 228 LADLAQSLVLPDEVVGRWGGEEF----LILTHREGYAVAQNLREVIAAYQF----AKGIT 279 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IT S G+A+ + + +I DQ LY AK GRNRVV Sbjct: 280 ITASFGVAKCNQHQSVQALISTIDQNLYTAKLQGRNRVV 318 >gi|157737071|ref|YP_001489754.1| GGDEF domain-containing protein [Arcobacter butzleri RM4018] gi|157698925|gb|ABV67085.1| GGDEF domain protein [Arcobacter butzleri RM4018] Length = 551 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 26/245 (10%) Query: 27 FMIYFS---------IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77 FMIYF I FS FI ++ ++ + L L P+ + + L+++S + Sbjct: 313 FMIYFFFKGNKETKIITFSFFIISIYWLYSS-LIAAALVPWEEYPSDVAVFICLLLLSYS 371 Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130 + L Y +EL + ++ LS D L+ L N +L Y E S Sbjct: 372 MVNKLNYT-----QELEDAKEELTILSSTDYLTKLNNRKNIDLALKMNENLYKRYKEPFS 426 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ FD+D FK++ND +GH VGDK+I ++D L +GR GGEEF L ++ Q Sbjct: 427 VILFDLDDFKKVNDTYGHLVGDKIIIEIADLLRKYTRESDIIGRWGGEEFIIICLKTNLQ 486 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 EA ++A +L++ + + + T S G++ + I+ ++ RAD A+Y AK + Sbjct: 487 EALVVALNLKEKVSLHKFDKVGNK----TASFGVSTFKDNDTITELLTRADDAMYKAKTN 542 Query: 251 GRNRV 255 G+NRV Sbjct: 543 GKNRV 547 >gi|309779542|ref|ZP_07674303.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA] gi|308921783|gb|EFP67419.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA] Length = 271 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 14/177 (7%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDN 145 F + ++ + D L+G+L F LGS + E L ++ D+D+FK IND Sbjct: 94 FAAERSLADRANTDHLTGMLARQRFFE-LGSFAVERAQHHAEPLCALYLDVDHFKSINDT 152 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD+ + LSD L V GRLGG+EFA G A + L+ + Sbjct: 153 WGHAAGDEALVALSDALADVLRPADLFGRLGGDEFAVLLPGCGLTGALAVVERLKTAVAG 212 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +Q + GP +T+S G A + ++ ++ AD L AK+ GRNRV +D++ Sbjct: 213 TQTPV--GP---LTVSVGAAPLRPGQDLARLLADADLGLMEAKRQGRNRVCVPTDVQ 264 >gi|239503815|ref|ZP_04663125.1| GGDEF family protein [Acinetobacter baumannii AB900] gi|323519787|gb|ADX94168.1| GGDEF domain-containing protein [Acinetobacter baumannii TCDC-AB0715] Length = 397 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 81/282 (28%), Positives = 131/282 (46%), Gaps = 36/282 (12%) Query: 13 LCHEKNL-ESFSPHTFMIYF------------SIFFSIFI-ATVIFIANIFLFYIGLTPF 58 LCH+ L S SP T + Y I +S FI AT+I +L G+ Sbjct: 117 LCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAVCTYLSMTGV--- 173 Query: 59 YGLEYILVENLSLVIISITISLLLG---------YISGSILKELFISYNR-----ISQLS 104 + Y + N + + + T LG ++ IL E+ ++ R I +LS Sbjct: 174 --ISYAPLFNFTAMRHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYIQRLS 231 Query: 105 RIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +ID L+ +LN + + L + +E+ +++ DID+FK+IND +GH GD+V+ ++ Sbjct: 232 QIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLIEIAQC 291 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L +GR GGEEF + +A +A R+ ++ I + IH++ S Sbjct: 292 LSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQIHVSAS 351 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 GI+ +I +ADQALY K SGRN+V F + Sbjct: 352 FGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQLPQ 393 >gi|262043458|ref|ZP_06016581.1| cellulose synthesis regulatory protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039200|gb|EEW40348.1| cellulose synthesis regulatory protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 438 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 17/203 (8%) Query: 69 LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120 L+L+ + T+ LLL ++ +++ + + + + D L+ LLN A S Sbjct: 236 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 295 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 L+++ D+D+FK IND +GH GD+V++ ++ L +GR+GGEEF Sbjct: 296 DCQRSGRPLAVIQLDLDHFKHINDRYGHQAGDRVLSMVASTLSSAVRQGDLLGRVGGEEF 355 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPIST 235 ++ QEAA +A LR+ I+ ++ + + ++ ++ S G++ + E + + Sbjct: 356 CIVMPNTTLQEAAAVAERLRQRIQGREVFLHNNVTLRVSASLGVSASEERGEYQFEALQS 415 Query: 236 IIYRADQALYVAKKSGRNRVVCF 258 + AD LY+AK++GRN+ VCF Sbjct: 416 V---ADGRLYLAKQNGRNQ-VCF 434 >gi|260754039|ref|YP_003226932.1| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553402|gb|ACV76348.1| diguanylate cyclase with beta propeller sensor [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 1045 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 17/175 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL + ++S+L+ D L+GLLN A ++ L ++ +SI D+D+FK+IND Sbjct: 875 ELQQANKQLSELANTDVLTGLLNRRALMAKLSELHQDALLNENAISIAMLDVDHFKKIND 934 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSEQEAAILANDLRK 201 +GH VGD V+ + + F GR GG+EF +A++ S A + N+ K Sbjct: 935 RYGHLVGDDVMRNAASIIRNNIRQEDFAGRYGGDEFIIAISASIEMSRHIAERIRNEFTK 994 Query: 202 IIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ I +G + + IT+S G+ E +E IS + +AD LY AK +GRNRV Sbjct: 995 IV------IKNGETELKITVSIGLFEITTEESISIALDKADSLLYWAKNNGRNRV 1043 >gi|254849718|ref|ZP_05239068.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|254845423|gb|EET23837.1| GGDEF domain-containing protein [Vibrio cholerae MO10] Length = 385 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND FG Sbjct: 213 QQLEEANQKLSYLAKTDSLTDIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFG 272 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 273 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 332 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 333 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 380 >gi|56461587|ref|YP_156868.1| intracellular signaling protein [Idiomarina loihiensis L2TR] gi|56180597|gb|AAV83319.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Idiomarina loihiensis L2TR] Length = 453 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 21/208 (10%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 LTPF L+ +E +SL+ +I + I+ S K R+ +L+ D L+GL N Sbjct: 255 LTPFTELD---IELMSLICSAIETII----INSSKTK-------RLEKLAYTDFLTGLSN 300 Query: 115 H---SAFISSLGSYNEKLSIV----FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 + L + K + V D+D+FK++NDN+GH GD+V+ + ++ + Sbjct: 301 RLFITERFEELEPNDNKFANVTCFAIIDVDHFKKVNDNYGHDAGDEVLQQTARKIAGLVR 360 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 V R+GGEEFA ++A + +R IE + I I SI +T+S G E Sbjct: 361 ISDCVSRVGGEEFALLLTDLPREKAERVLEKVRTAIEGNAITIDKNQSIKVTVSIGATEL 420 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ ++ +AD ALY +K+ GRNRV Sbjct: 421 KAEDEFNSAYKKADLALYKSKRDGRNRV 448 >gi|224368331|ref|YP_002602494.1| hypothetical protein HRM2_12180 [Desulfobacterium autotrophicum HRM2] gi|223691047|gb|ACN14330.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 488 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 8/163 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+++++ D L+G+ N AF + + LSI+ FD+D+FK++ND +GH G Sbjct: 314 RLTKMASTDKLTGVYNRRAFDIIIDQTLKEIQRKQTPLSIILFDLDHFKRVNDTYGHLAG 373 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D +I + R GGEEF G +A A +R + SQ Sbjct: 374 DYIIQTTVGTAARTIRNSDILCRWGGEEFLILLKGCDLGDAMKTAEKIRTAVA-SQPARY 432 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I +TIS G+ E ++ T++ RAD+ALY+AK SG+NR Sbjct: 433 GDDQICVTISVGVTEHTGQDTKETLLKRADKALYLAKASGKNR 475 >gi|153800684|ref|ZP_01955270.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|124123819|gb|EAY42562.1| GGDEF family protein [Vibrio cholerae MZO-3] Length = 469 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND FG Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464 >gi|311694422|gb|ADP97295.1| diguanylate cyclase (GGDEF domain) [marine bacterium HP15] Length = 308 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 10/174 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148 Y I Q S D L+G+ N A +L + E S+V D+D+FK +ND GH Sbjct: 136 QYVAIEQASLTDSLTGIPNKRALDDALQRSSLLSERHGEPYSLVLCDLDHFKTVNDTHGH 195 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD ++ + ++ T V R GGEEFA +SEQ+A +A +R+ I + I Sbjct: 196 VVGDHLLQLAACEIEKSIRTSDSVYRFGGEEFAILLPHTSEQDARDVAERVREAI--AAI 253 Query: 209 NISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + G + +T S G+A KE + RAD+ALY AK GRN F+ I Sbjct: 254 RVDGGEKELKVTTSCGVATFLPKEAPQAWLARADEALYRAKHQGRNCTRVFATI 307 >gi|237808597|ref|YP_002893037.1| diguanylate cyclase [Tolumonas auensis DSM 9187] gi|237500858|gb|ACQ93451.1| diguanylate cyclase [Tolumonas auensis DSM 9187] Length = 392 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 110/209 (52%), Gaps = 20/209 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------S 116 +LV N+ +V++ ++ S++L I+ L++ +++ + D L+G+ N + Sbjct: 192 LLVFNVIIVLLGLSFSIML--ITSQWLQQ------KLAAFASYDALTGIYNRYGLNEQSA 243 Query: 117 AFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 A +S G + S+ DIDYFK+ ND++GHPVGD V+ ++++L + R Sbjct: 244 ALFNSDGKLSATDYSVAMIDIDYFKKTNDDYGHPVGDAVLKEVAERLRQNIRHHDILARY 303 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 GGEEF G++ +A A +R + I + +I IT+S G+ K+ S Sbjct: 304 GGEEFIVVLPGTNITDALHWAERVRAQVAAKPIQVDQ-HAIQITLSIGVVALPGKDKHSA 362 Query: 236 I---IYRADQALYVAKKSGRNRVVCFSDI 261 I +AD ALY AK++GRN+V CF + Sbjct: 363 FDEAIRQADIALYQAKENGRNQVRCFGAV 391 >gi|153831317|ref|ZP_01983984.1| GGDEF family protein [Vibrio cholerae 623-39] gi|148873202|gb|EDL71337.1| GGDEF family protein [Vibrio cholerae 623-39] Length = 200 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND FG Sbjct: 28 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQSRSGSLTLMVFDIDDFKTINDRFG 87 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 88 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 147 Query: 208 INISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 148 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 195 >gi|306842317|ref|ZP_07474977.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] gi|306287574|gb|EFM59030.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] Length = 381 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 13/164 (7%) Query: 101 SQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 S+ S ID LS + N F + + +I+ D+DYFK++ND +GH GD+V Sbjct: 219 SEQSEIDALSQIYNRRGFDRHVMRRLMRKGPDTPYAIIMSDLDYFKRVNDTYGHDCGDRV 278 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 I L P R+GGEEF G+ A+ A+DL + + + +S SG Sbjct: 279 IEAFGGLLRTHLPKPAVAARMGGEEFVVFMPGAD----AVAAHDLAQTLRTTMTALSFSG 334 Query: 214 PSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T S G+AE E + I RAD ALY AKK+GRNRV Sbjct: 335 DAAEWMPTASFGVAEHRVGEGLYDTIRRADGALYEAKKAGRNRV 378 >gi|262396757|ref|YP_003288610.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio sp. Ex25] gi|262340351|gb|ACY54145.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio sp. Ex25] Length = 451 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 88/172 (51%), Gaps = 11/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFG 147 ++L I+ ++ +++ D L+ L N I L N L+++ FDID FK IND +G Sbjct: 268 RQLTIANQQLLEMTLTDSLTKLYNRRHLIEQLALLNHLQRSLTVMVFDIDDFKSINDQYG 327 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+ I +++ + M + R+GGEEFA SE+EA A L K + Sbjct: 328 HLVGDRAIVAVAETAKSMTDERMTLARIGGEEFALVTASLSEREARNFAQMLCKAVYEQP 387 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYR---ADQALYVAKKSGRNRVV 256 I I G +IH++IS G C P T I ADQ +Y K G+NR V Sbjct: 388 I-ILGGQAIHLSISLG----CAYYPEFTHIVNLQDADQLMYQGKSEGKNRAV 434 >gi|167625252|ref|YP_001675546.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167355274|gb|ABZ77887.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 396 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 28/215 (13%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 + + ++ +L L I T++ + YI + F++Y D L+GL + A Sbjct: 191 LWAVHFVFPASLPLSISMTTLATI--YILTVLTDSYFLAYR--------DELTGLASRRA 240 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + S K S+ DID+FK+ ND +GH VGD+V+ ++ ++ V G R GG Sbjct: 241 LYNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLRLVASKIAKVSGGGKAF-RYGG 299 Query: 178 EEF--------AAAALG-------SSEQEAAILANDLRKIIENSQINISSGPS--IHITI 220 EEF ++A LG + E+ +L N+ RK ++ + S + +TI Sbjct: 300 EEFTVIFPRKDSSAVLGYLEDVREAIEEYDIVLRNEQRKSQSKAKRGKAQQKSQTVSVTI 359 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+AE E + R+DQALY AKK GRN++ Sbjct: 360 SIGVAEHQSGETFEQTMKRSDQALYKAKKKGRNQI 394 >gi|62289400|ref|YP_221193.1| GGDEF domain-containing protein [Brucella abortus bv. 1 str. 9-941] gi|82699327|ref|YP_413901.1| GGDEF [Brucella melitensis biovar Abortus 2308] gi|189023651|ref|YP_001934419.1| GGDEF domain protein [Brucella abortus S19] gi|237814886|ref|ZP_04593884.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella abortus str. 2308 A] gi|254688713|ref|ZP_05151967.1| GGDEF domain protein [Brucella abortus bv. 6 str. 870] gi|254696841|ref|ZP_05158669.1| GGDEF domain protein [Brucella abortus bv. 2 str. 86/8/59] gi|254703766|ref|ZP_05165594.1| GGDEF domain protein [Brucella suis bv. 3 str. 686] gi|254729746|ref|ZP_05188324.1| GGDEF domain protein [Brucella abortus bv. 4 str. 292] gi|256031055|ref|ZP_05444669.1| GGDEF domain protein [Brucella pinnipedialis M292/94/1] gi|256256960|ref|ZP_05462496.1| GGDEF domain protein [Brucella abortus bv. 9 str. C68] gi|260545848|ref|ZP_05821589.1| GGDEF domain-containing protein [Brucella abortus NCTC 8038] gi|260754191|ref|ZP_05866539.1| predicted protein [Brucella abortus bv. 6 str. 870] gi|260757411|ref|ZP_05869759.1| predicted protein [Brucella abortus bv. 4 str. 292] gi|260761236|ref|ZP_05873579.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883216|ref|ZP_05894830.1| predicted protein [Brucella abortus bv. 9 str. C68] gi|261754413|ref|ZP_05998122.1| predicted protein [Brucella suis bv. 3 str. 686] gi|265988127|ref|ZP_06100684.1| predicted protein [Brucella pinnipedialis M292/94/1] gi|297247813|ref|ZP_06931531.1| GGDEF domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|62195532|gb|AAX73832.1| GGDEF domain [Brucella abortus bv. 1 str. 9-941] gi|82615428|emb|CAJ10397.1| GGDEF [Brucella melitensis biovar Abortus 2308] gi|189019223|gb|ACD71945.1| GGDEF domain protein [Brucella abortus S19] gi|237789723|gb|EEP63933.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella abortus str. 2308 A] gi|260097255|gb|EEW81130.1| GGDEF domain-containing protein [Brucella abortus NCTC 8038] gi|260667729|gb|EEX54669.1| predicted protein [Brucella abortus bv. 4 str. 292] gi|260671668|gb|EEX58489.1| predicted protein [Brucella abortus bv. 2 str. 86/8/59] gi|260674299|gb|EEX61120.1| predicted protein [Brucella abortus bv. 6 str. 870] gi|260872744|gb|EEX79813.1| predicted protein [Brucella abortus bv. 9 str. C68] gi|261744166|gb|EEY32092.1| predicted protein [Brucella suis bv. 3 str. 686] gi|264660324|gb|EEZ30585.1| predicted protein [Brucella pinnipedialis M292/94/1] gi|297174982|gb|EFH34329.1| GGDEF domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 381 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 13/164 (7%) Query: 101 SQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 S+ S ID LS + N F + + +I+ D+DYFK++ND +GH GD+V Sbjct: 219 SEQSEIDALSQIYNRRGFDRHVMRRLMRKGPDTPYAIIMSDLDYFKRVNDTYGHDCGDRV 278 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 I L P R+GGEEF G+ A+ A+DL + + + +S SG Sbjct: 279 IEAFGGLLRTHLPKPAVAARMGGEEFVVFMPGAD----AVAAHDLAQTLRTTMTALSFSG 334 Query: 214 PSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T S G+AE E + I RAD ALY AKK+GRNRV Sbjct: 335 DAAEWMPTASFGVAEHRVGEGLYDTIRRADGALYEAKKAGRNRV 378 >gi|71906795|ref|YP_284382.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica RCB] gi|71846416|gb|AAZ45912.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica RCB] Length = 469 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 85/168 (50%), Gaps = 7/168 (4%) Query: 96 SYNRISQLSRIDCLSGLLN----HSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGH 148 S R LS+ D L+GL N H + L G Y LS++ D D FK +ND +GH Sbjct: 296 SEERYRSLSQTDSLTGLFNSRHLHEQLPNELERAGRYGRPLSLLVLDCDNFKCVNDRYGH 355 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDKV+ L+ + F R GGEEF ++ Q A +A LR + + Sbjct: 356 LGGDKVLQSLATAIGHCLRRSDFAFRYGGEEFVVLLPETAIQAALAIAERLRSQFASIET 415 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SG +I T+S G+AE E ++++ RAD+A Y+AK G+N VV Sbjct: 416 PAPSGDAICCTVSIGVAECVPGESEASLVRRADEACYMAKARGKNCVV 463 >gi|332296092|ref|YP_004438015.1| diguanylate cyclase [Thermodesulfobium narugense DSM 14796] gi|332179195|gb|AEE14884.1| diguanylate cyclase [Thermodesulfobium narugense DSM 14796] Length = 337 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 13/166 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + LS D L+G+ N F IS Y ++LS +FFDID FK +ND FGH +GD Sbjct: 176 LRNLSEKDPLTGIYNRRKFQEICEHSISESDRYKKELSFIFFDIDNFKMVNDTFGHNIGD 235 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +++ + + R GGEEF ++ A +A +RK IE + Sbjct: 236 VVLKEIANIVKREIRKSDYFARWGGEEFILILPETNINSALTVAEKIRKSIE-----VYE 290 Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 P++ +T+S G+A R E S + R D A+Y AK G+N VV Sbjct: 291 FPAVGRVTVSIGVASRKFSEDYSDLFKRLDDAVYRAKSLGKNTVVA 336 >gi|254693196|ref|ZP_05155024.1| GGDEF domain protein [Brucella abortus bv. 3 str. Tulya] gi|261213438|ref|ZP_05927719.1| predicted protein [Brucella abortus bv. 3 str. Tulya] gi|260915045|gb|EEX81906.1| predicted protein [Brucella abortus bv. 3 str. Tulya] Length = 381 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 13/164 (7%) Query: 101 SQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 S+ S ID LS + N F + + +I+ D+DYFK++ND +GH GD+V Sbjct: 219 SEQSEIDALSQIYNRRGFDRHVMRRLMRKGPDTPYAIIMSDLDYFKRVNDTYGHDCGDRV 278 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 I L P R+GGEEF G+ A+ A+DL + + + +S SG Sbjct: 279 IEAFGGLLRTHLPKPAVAARMGGEEFVVFMPGAD----AVAAHDLAQTLRTTMTALSFSG 334 Query: 214 PSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T S G+AE E + I RAD ALY AKK+GRNRV Sbjct: 335 DAAEWMPTASFGVAEHRVGEGLYDTIRRADGALYEAKKAGRNRV 378 >gi|241765550|ref|ZP_04763510.1| diguanylate cyclase [Acidovorax delafieldii 2AN] gi|241364639|gb|EER59677.1| diguanylate cyclase [Acidovorax delafieldii 2AN] Length = 398 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 12/165 (7%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 Q + +D L+G+ N A ++ L ++++ DID FK++ND +GH GD Sbjct: 219 QQQALLDPLTGVPNRRALMAELERTLAQAVRERRPVALLMMDIDRFKRVNDTYGHVAGDA 278 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+A ++ L F+GR GGEEF A G+ A ++A LR +E ++ + Sbjct: 279 VLAAVAQCLKGGLRGQDFIGRYGGEEFLALLPGTDAAGAGVVAEHLRARVE--RLTMPWE 336 Query: 214 PS-IHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 P I +T+S G R E ++ ADQA+Y AK++GRNRV Sbjct: 337 PEDIRVTVSIGAHTRVPDEGTGAQAMVDVADQAMYAAKRAGRNRV 381 >gi|308185567|ref|YP_003929698.1| hypothetical protein Pvag_0026 [Pantoea vagans C9-1] gi|308056077|gb|ADO08249.1| Uncharacterized membrane protein [Pantoea vagans C9-1] Length = 365 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 7/179 (3%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQIND 144 ++ +L+ S LS +D L+GL N + L + E + ++ DID+FK ND Sbjct: 176 LMHQLYEEKETFSDLSMLDPLTGLYNRRGLKNRLDNILENHAGSHYVLLLDIDHFKAYND 235 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH +GD+ +A +S + + V R GGEEF + A LA +R+ + Sbjct: 236 NYGHAMGDQALARVSVAIRDAVRSRDVVTRYGGEEFLVLMTNVNSSIAMKLAERIRQYVL 295 Query: 205 NSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + +I + S H+TISAGIA + + AD ALYVAK GRN ++ + D+ Sbjct: 296 DLEIPHLFNETVSTHVTISAGIAP-IYDNEFDLAVANADSALYVAKNQGRNTILAWEDL 353 >gi|258624543|ref|ZP_05719483.1| GGDEF family protein [Vibrio mimicus VM603] gi|258583158|gb|EEW07967.1| GGDEF family protein [Vibrio mimicus VM603] Length = 352 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 118/265 (44%), Gaps = 30/265 (11%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70 +W C F P F I+ S F+ +++ I G+ Y ++N Sbjct: 98 VWSC-------FVPILFYIFTSARFAFLTSSLFLILQ-----------SGIVYWQLQNEP 139 Query: 71 LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125 L+ S+ + L YI ++ ++ R + L+ D L+ N + +S + Sbjct: 140 LISWSVLLHLSFAYIGIWVVSHVYEQNRRKIENSLLYLASRDPLTSAHNRLSLTTSFQHF 199 Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + LS++ D+D+FK IND FGH GDKV+ + L V G R+GGEEF Sbjct: 200 EQFNDQTTLSLLVIDLDFFKSINDQFGHDTGDKVLIETTRLLAQVVGDNNLY-RIGGEEF 258 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 S ++A + LR II + I + +TIS G+ E + ++ ++ A Sbjct: 259 CVTLFDQSLEQAERVCERLRAII-SQHIFAFGDKRVQVTISIGVCEYQPGDQLNDLLKFA 317 Query: 241 DQALYVAKKSGRNRVVCFSDIENNT 265 D LY AKK+GRN+V F + T Sbjct: 318 DIELYRAKKAGRNQVRLFKHAQTQT 342 >gi|229523051|ref|ZP_04412463.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae TM 11079-80] gi|229339901|gb|EEO04911.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae TM 11079-80] Length = 469 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND FG Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQARSGSLTLMVFDIDDFKTINDRFG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464 >gi|224823606|ref|ZP_03696715.1| diguanylate cyclase with PAS/PAC and GAF sensors [Lutiella nitroferrum 2002] gi|224604061|gb|EEG10235.1| diguanylate cyclase with PAS/PAC and GAF sensors [Lutiella nitroferrum 2002] Length = 737 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 84/161 (52%), Gaps = 9/161 (5%) Query: 103 LSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GLLN +F+ Y LSI+ D+D+FK IND GH GD+V+ Sbjct: 565 LATRDGLTGLLNRRSFMEVGEAEVLRSKRYGHDLSIMMMDLDHFKGINDQHGHATGDQVL 624 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + F VGRLGGEEF ++ EA ILA LR ++ S + ++ G + Sbjct: 625 QHFATLCGNTFRHADIVGRLGGEEFGVLLPFTTLAEAGILAERLRAEVDGSVV-MACGVA 683 Query: 216 IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255 +H T+S GI+ + I + RAD LY AK GRNR+ Sbjct: 684 VHYTVSIGISSVFPDDKDIDGPLSRADTLLYQAKTLGRNRI 724 >gi|89094058|ref|ZP_01167002.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) [Oceanospirillum sp. MED92] gi|89081732|gb|EAR60960.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) [Oceanospirillum sp. MED92] Length = 430 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 86/169 (50%), Gaps = 9/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSA----FISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +L+ D L+ L N F L ++ LS+ FFD DYFK IND +GH G Sbjct: 262 KLQELAAYDELTKLRNRRECTRIFDKQLNFAQRNDQPLSLCFFDFDYFKSINDQYGHMAG 321 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ + L ++ R GGEEF + ++ QE +LA +LR + N ++ Sbjct: 322 DYVLKETAKFLTENLRVSDYLFRWGGEEFILISANTTRQEMQVLAENLRAKLANLLLDY- 380 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G SIH+T S GIA H E S +I AD ALY AK GRN V F Sbjct: 381 DGQSIHVTGSFGIASYPQHGESQSELILAADSALYQAKSDGRNCVRLFQ 429 >gi|327537619|gb|EGF24331.1| diguanylate cyclase [Rhodopirellula baltica WH47] Length = 322 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 81/159 (50%), Gaps = 9/159 (5%) Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N AF L + + +++ DID+FK IND GHP+GD V+ Sbjct: 147 ARTDGLTGLFNRRAFDKKLDELFSAYRAGGKSFTLILMDIDHFKMINDTHGHPIGDIVLQ 206 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +S +L V R GGEEFA + AA N LR I N ++ S + Sbjct: 207 QISQRLGHGMQDAEIVSRFGGEEFAILTH-LPIRAAADKINKLRDRIANDPVDAGSA-EL 264 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G++ I I+ RAD+ALY AK GRNRV Sbjct: 265 QVTLSVGLSTPHEDLVIGPIVRRADEALYSAKNMGRNRV 303 >gi|149374538|ref|ZP_01892312.1| response regulator receiver domain protein (CheY-like) [Marinobacter algicola DG893] gi|149361241|gb|EDM49691.1| response regulator receiver domain protein (CheY-like) [Marinobacter algicola DG893] Length = 636 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 11/170 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 N++ +LS D L+GL N F + S +++ LS++ DID+FK+ ND GH V Sbjct: 454 NQLRELSATDALTGLKNRGHFDRTFSSAVVKAYRFSQPLSLLLLDIDHFKKFNDTHGHLV 513 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + +++ + P R GGEEF + + A +A +R IE + Sbjct: 514 GDDCLQMVANCIREYVTRPQDLAARYGGEEFVVLLPDTPREGALRVAEKIRSRIEETGFR 573 Query: 210 ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 +S +H+T+S G+ C + +T I AD+ALY AK GRN+VV Sbjct: 574 VSD-EVLHLTVSIGLCAVCPSQADATKDIFSWADEALYEAKGRGRNQVVA 622 >gi|15615598|ref|NP_243902.1| two-component sensor histidine kinase [Bacillus halodurans C-125] gi|10175658|dbj|BAB06755.1| two-component sensor histidine kinase [Bacillus halodurans C-125] Length = 567 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 11/175 (6%) Query: 101 SQLSRIDCLSGLLNHSAFISSLG-SYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 Q S D L+GL N + +L + NE SI+ D+D+FK+IND +GH G+ V+ Sbjct: 388 KQESVRDPLTGLYNFRYMMEALKKTVNEADFPFSIILLDLDHFKKINDTYGHQSGNDVLE 447 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA----ILANDL--RKIIENSQINI 210 ++D++ + + R GGEEF E++A +L D R I+ S + + Sbjct: 448 AVADRMRKICPDNSVISRYGGEEFVILLPHHGEEDARQVGILLQQDFSSRSILIRSDLLV 507 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALY-VAKKSGRNRVVCFSDIENN 264 I +T S GIAE K+ +I +AD+A+Y AK GRNRV +SDI+ Sbjct: 508 GETVDIKVTASFGIAEAGKKDHAMDLIRKADRAMYNGAKSKGRNRVATYSDIKQE 562 >gi|324114581|gb|EGC08549.1| GGDEF domain-containing protein [Escherichia fergusonii B253] Length = 467 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 9/161 (5%) Query: 107 DCLSGLLNHSAFIS-------SLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ LLN FI S+ ++ K ++ DIDYFKQIND +GH GD + + Sbjct: 302 DSLTQLLNRR-FIPTIMRREISIALHSRKPFALAMLDIDYFKQINDRYGHNAGDNTLKNV 360 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 S + + +V R GGEEF + + +A I+ +LR + +I S+ S + Sbjct: 361 SAMIYEHIRSSDYVFRYGGEEFMILLVETELSQAKIILENLRNKMAGLRIQASASESFSV 420 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 T+S G+AE + +I +AD ALY AK GRNRV F Sbjct: 421 TVSIGVAEYDYHPDYKLLIEKADSALYYAKSQGRNRVEVFQ 461 >gi|229526858|ref|ZP_04416262.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae bv. albensis VL426] gi|229337016|gb|EEO02034.1| ABC-type amino acid transport/signal transduction component [Vibrio cholerae bv. albensis VL426] Length = 469 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND FG Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464 >gi|168177676|ref|ZP_02612340.1| GGDEF/HD domain protein [Clostridium botulinum NCTC 2916] gi|182670681|gb|EDT82655.1| GGDEF/HD domain protein [Clostridium botulinum NCTC 2916] Length = 567 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 9/172 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L D L+ + NH F +L NE LS++F DIDYFK ND +GH G Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 248 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210 D+V+ + + L V R GGEEFA +SEQ+A +A +RK IE + Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGE 308 Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261 + P+ ++T+S GI+ +K +I AD ALY AK +NRV ++ I Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360 >gi|157160994|ref|YP_001458312.1| diguanylate cyclase [Escherichia coli HS] gi|157066674|gb|ABV05929.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli HS] Length = 279 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 115 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 172 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 173 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 231 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 232 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 268 >gi|297580347|ref|ZP_06942274.1| GGDEF family protein [Vibrio cholerae RC385] gi|297535993|gb|EFH74827.1| GGDEF family protein [Vibrio cholerae RC385] Length = 469 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND FG Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464 >gi|148360603|ref|YP_001251810.1| GGDEF domain-containing protein [Legionella pneumophila str. Corby] gi|296106331|ref|YP_003618031.1| GGDEF domain protein [Legionella pneumophila 2300/99 Alcoy] gi|148282376|gb|ABQ56464.1| GGDEF domain protein [Legionella pneumophila str. Corby] gi|295648232|gb|ADG24079.1| GGDEF domain protein [Legionella pneumophila 2300/99 Alcoy] Length = 516 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 16/160 (10%) Query: 107 DCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N ++ + S + LS+ DID+FK+INDNFGH GDKV+ Sbjct: 359 DSLTGLPNRESYEEHILDSFQRWKRSSSALSLAVCDIDHFKRINDNFGHLAGDKVLK--- 415 Query: 160 DQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ ++F + + F+ R+GGEEF +S +EA + LRK++E+ + Sbjct: 416 -KVAMIFKSSIRTVDFIARIGGEEFVFIFEQTSSKEAFGILEKLRKLVEDC-LFYYREKK 473 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+ K+ I ++ RAD A+Y AK +GRNRV Sbjct: 474 VDVTVSFGLTTVTEKDDIESLFMRADNAMYKAKNAGRNRV 513 >gi|83746672|ref|ZP_00943721.1| Hypothetical Protein RRSL_03583 [Ralstonia solanacearum UW551] gi|83726625|gb|EAP73754.1| Hypothetical Protein RRSL_03583 [Ralstonia solanacearum UW551] Length = 551 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 9/155 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L F++ + E L +V D+D+FK+IND +GH VGD + + Sbjct: 395 DHLTGVLTRRRFLALFETVLTRAHVRGESLVLVLADLDHFKRINDTWGHAVGDLALQRFA 454 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V + +GRLGGEEFA ++ ++AA + LR I+ + ++ SG + +T Sbjct: 455 SLATGVMRSSDLIGRLGGEEFAVVMSSTTLEDAAGVVERLRAIVAEADDSLPSG--LTMT 512 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +S G+ + S ++ RAD ALY AK+SGRNR Sbjct: 513 VSLGMTACRSGDTASEMLRRADLALYRAKESGRNR 547 >gi|109899014|ref|YP_662269.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109701295|gb|ABG41215.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 339 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 10/167 (5%) Query: 98 NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ Q++ +D L+GL N SL + +S++ D+D+FK++ND +GH + Sbjct: 173 KRLQQMASVDPLTGLNNRLLLDSSFEMLCESLPEQQQTVSMLLIDLDHFKKVNDEYGHDI 232 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDKV+ ++ + + RLGGEEF +SEQ+A +A +R I+E I I Sbjct: 233 GDKVLIEVARLINETRRLNDWAFRLGGEEFCMLIPDTSEQQAKNIAERIRLIVEKD-ILI 291 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 +S + I++S G++ IY+ AD+ LY AK++GRN+V+ Sbjct: 292 NS-KDMKISVSIGVSHWPEDGQTLNQIYKLADERLYKAKETGRNKVI 337 >gi|325474702|gb|EGC77888.1| GGDEF domain-containing protein [Treponema denticola F0402] Length = 1662 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 4/130 (3%) Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + +D+D FK++ND FGH +GD V+ + + V +GR+GGEEF + +++ Sbjct: 1363 LMYDLDKFKKVNDTFGHQMGDTVLKATAKTALGVLKKGQILGRVGGEEFVILLPNTEKKQ 1422 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250 A I+A +RK +E + P+I ITIS GIA H ++ + DQALY AK Sbjct: 1423 ALIIAEKIRKQVEALHFD---NPAIRITISMGIAVFPTHGTAEKDLLSKVDQALYAAKNW 1479 Query: 251 GRNRVVCFSD 260 GRN+ V + + Sbjct: 1480 GRNQTVVWEE 1489 >gi|320451385|ref|YP_004203481.1| diguanylate cyclase/phosphodiesterase domain 1 [Thermus scotoductus SA-01] gi|320151554|gb|ADW22932.1| diguanylate cyclase/phosphodiesterase domain 1 [Thermus scotoductus SA-01] Length = 358 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 13/157 (8%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + + Y LS++ D+D FK+IND GHPVGD+V+ L+ Sbjct: 204 DPLTGLRNRRYLDLVLERELFRVQRYRRPLSLLVLDLDNFKRINDTHGHPVGDRVLKALA 263 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L RLGGEEFA + +A +A+ LR+ + ++ + G I+ Sbjct: 264 RCLEEHIRQSDRAVRLGGEEFAVLLAETPLAQAVRMASRLRQAVATLRVFPAEG----IS 319 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+AE R P+S ++ RAD ALY AK+ G+NRV Sbjct: 320 VSIGVAEARPEDSPLS-LLKRADDALYQAKRRGKNRV 355 >gi|309791095|ref|ZP_07685630.1| signal transduction family protein (GGDEF domain protein) [Oscillochloris trichoides DG6] gi|308226879|gb|EFO80572.1| signal transduction family protein (GGDEF domain protein) [Oscillochloris trichoides DG6] Length = 415 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 14/184 (7%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDY 138 G L++ F+ R SQ D L+ + N H F+ S LSI+ D+DY Sbjct: 220 GRHLQQTFLDLERQSQF---DSLTQVYNRRYFDAYLHREFLRSRRE-QTPLSIILCDVDY 275 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAN 197 FK ND +GH +GD+ + L L P V R GGEEF +S + A +A Sbjct: 276 FKTYNDIYGHQMGDQCLRQLGMALAATIKRPGDIVARYGGEEFVIVLPHTSTEGAYAIAE 335 Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E+ I + + S HIT+S G+A + S ++ RADQALY AK++G+N VV Sbjct: 336 LVRANVESLNILHKGNQVSDHITLSCGVATSHGEIRASMLLERADQALYQAKQTGKNMVV 395 Query: 257 CFSD 260 C D Sbjct: 396 CALD 399 >gi|239908809|ref|YP_002955551.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239798676|dbj|BAH77665.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 819 Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 56/160 (35%), Positives = 77/160 (48%), Gaps = 8/160 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N S + Y E ++ + D+DYFKQ+ND +GH GD V+ LS Sbjct: 650 DPLTGLHNRRFLDSYMHQYEEISRRTEKRVGFLMVDVDYFKQVNDKYGHLAGDAVLKELS 709 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF +++A +R+ +E + G +IH T Sbjct: 710 GLLRQTVRAADLAVRFGGEEFLILLHEVRPDFTSVVAEKIRQTVETHAFPLPDGSTIHKT 769 Query: 220 ISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +S G AE I AD ALY AK+SGRN+V+CF Sbjct: 770 VSVGFAEYPTDAASFYKAIKFADVALYKAKESGRNKVLCF 809 >gi|152967450|ref|YP_001363234.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] gi|151361967|gb|ABS04970.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] Length = 487 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 19/194 (9%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125 + ++VI S + LL+ ++L L + L+R D L+GLLN + ++L Sbjct: 286 QGWAVVISSAVLFLLVVARMSALLGRLREQTALLGDLARTDPLTGLLNRRSADAALERVR 345 Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDK-VIAFLSDQLVVVFGTPMFVGRLGGE 178 L + D+D FK ND GHP GD+ ++ S V+ GT + + R GGE Sbjct: 346 ERTRREGTALVVALLDLDRFKDFNDTRGHPAGDRLLVGAASAWGAVLAGTGIQLARWGGE 405 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EF A G L +DLR ++ Q T SAG+A +E ++ Sbjct: 406 EFLLVASGWETGRVEQLLDDLRAVVPEGQ-----------TFSAGLARWDGQEATDRLVA 454 Query: 239 RADQALYVAKKSGR 252 RAD+ALY AK +GR Sbjct: 455 RADEALYAAKHAGR 468 >gi|321314637|ref|YP_004206924.1| putative diguanylate cyclase or phosphodiesterase [Bacillus subtilis BSn5] gi|320020911|gb|ADV95897.1| putative diguanylate cyclase or phosphodiesterase [Bacillus subtilis BSn5] Length = 359 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 12/167 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGS-YNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155 + D L+G+ N F + + Y + + ++++ DID+FK IND +GH GD+V+ Sbjct: 192 AHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQYGHHEGDQVL 251 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L +L R+GGEEFA S +AA +A +R + ++ I +++G Sbjct: 252 KELGLRLKQSIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRSTVSDAPIVLTNGDE 311 Query: 216 IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +TIS G A + ++P S I ADQ LY AK++GRNR VCFS+ Sbjct: 312 LSVTISLGAAHYPNNTEQPGSLPIL-ADQMLYKAKETGRNR-VCFSE 356 >gi|302388955|ref|YP_003824776.1| diguanylate cyclase [Thermosediminibacter oceani DSM 16646] gi|302199583|gb|ADL07153.1| diguanylate cyclase [Thermosediminibacter oceani DSM 16646] Length = 570 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 12/176 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHP 149 +++ S+L+ D L+ L N L ++ S++ DID+FK ND +GH Sbjct: 395 FDKTSKLAVTDSLTRLYNLRYIYEELERMVNRVKNNGGVFSLIIIDIDHFKSYNDRYGHL 454 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208 VGD ++ L++ L VGR GGEEF + EA +A +R+++E+++ Sbjct: 455 VGDSILKKLAEVLKDNVRDNDIVGRYGGEEFVIILPDTPGAEAYAIAERIREVVESTEFA 514 Query: 209 NISSGPSIHITISAGIAERCHKEPIST--IIYRADQA-LYVAKKSGRNRVVCFSDI 261 +G I ITISAG+A C + ++ ++ +ADQA L+ AK+ GRNRVV F + Sbjct: 515 QTDTGKKIFITISAGVAS-CPDDALTVKELVRKADQALLFGAKQKGRNRVVEFKKM 569 >gi|226947564|ref|YP_002802655.1| GGDEF/HD domain protein [Clostridium botulinum A2 str. Kyoto] gi|226843784|gb|ACO86450.1| GGDEF/HD domain protein [Clostridium botulinum A2 str. Kyoto] Length = 567 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 9/172 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L D L+ + NH F +L NE LS++F DIDYFK ND +GH G Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 248 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210 D+V+ + + L V R GGEEFA +SEQ+A +A +RK IE + Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGE 308 Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261 + P+ ++T+S GI+ +K +I AD ALY AK +NRV ++ I Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360 >gi|254504882|ref|ZP_05117033.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222440953|gb|EEE47632.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 543 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 10/176 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ L+R D L+GL N AF ++ L + S + D+D FK IND GH Sbjct: 359 RQLDALARQDALTGLANRRAFFDRLDQLLNELDRHPHPASFLMLDLDKFKIINDTRGHAA 418 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ + VGR+GGEEFA +S ++A + A LR + + + Sbjct: 419 GDEVLKAFASLCQETVRKVDVVGRIGGEEFAILLPHTSAEDATVFAERLRTAVAAIRFS- 477 Query: 211 SSGP--SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 +GP + T+S G++ + T + +AD+ALY +K SGRNRV + + N+ Sbjct: 478 ETGPLSGLTFTVSIGLSAISERIDARTWLSQADKALYQSKASGRNRVTVYQKLSND 533 >gi|170747189|ref|YP_001753449.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium radiotolerans JCM 2831] gi|170653711|gb|ACB22766.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium radiotolerans JCM 2831] Length = 298 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 11/161 (6%) Query: 102 QLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+G N AF + + + +S + DID+FK+IND GH VGD I Sbjct: 131 RLAETDPLTGSYNRRAFFNRARAAVAQDPRPDAVSAILLDIDHFKRINDEHGHDVGDVAI 190 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++D ++ G+ GRLGGEEFA G EA A LR ++ +I + GP Sbjct: 191 KAVAD---LISGS-GIAGRLGGEEFAVILPGRDLGEAVAHAERLRGDVQALRIRGAKGP- 245 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I ++ S G++ + + ++ RAD ALY AK GRNRVV Sbjct: 246 IALSCSFGVSTWRDGDSVEALVKRADVALYAAKGGGRNRVV 286 >gi|254285167|ref|ZP_04960133.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|150425170|gb|EDN16947.1| GGDEF family protein [Vibrio cholerae AM-19226] Length = 469 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND FG Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464 >gi|42522326|ref|NP_967706.1| GGDEF domain-containing protein [Bdellovibrio bacteriovorus HD100] gi|39574858|emb|CAE78699.1| GGDEF domain protein [Bdellovibrio bacteriovorus HD100] Length = 320 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/133 (40%), Positives = 75/133 (56%), Gaps = 3/133 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAA 184 NE S+V FDID+FK+IND++GHP GD V+ L ++ + + F R GGEEF Sbjct: 186 NEPFSLVTFDIDHFKKINDSYGHPGGDYVLKELCRIVITKLIRSNDFFARYGGEEFVLLL 245 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQA 243 GS + A + +R+ IE G I +TIS G+A + E T +Y RAD+A Sbjct: 246 SGSPSKTAGEVGERIRQTIEAHDFTF-EGKKIPVTISVGVATKLPNETEWTQVYDRADKA 304 Query: 244 LYVAKKSGRNRVV 256 LY +K+ GRNR Sbjct: 305 LYQSKQGGRNRTT 317 >gi|323496636|ref|ZP_08101688.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] gi|323318289|gb|EGA71248.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] Length = 319 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 89/162 (54%), Gaps = 5/162 (3%) Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + Q + D L+ L N +F I++L +K+ ++ DID+FK NDNFGH GD VI Sbjct: 156 VQQDALFDSLTSLYNRRSFDNDITTLCQSGQKMCLILADIDHFKGYNDNFGHLFGDAVIK 215 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPS 215 ++ +L + + R GGEEFA + A A+ LR+ IE I + SG Sbjct: 216 GIAKRLHINARDGVHAYRFGGEEFALIVPNKQLRIARQYADSLRRSIEKLSIKDKRSGKQ 275 Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +IT S G+AE E ++I RAD+ LY AK+ GRNRV+ Sbjct: 276 VGNITASFGVAELQPDESPESLIERADKLLYEAKQLGRNRVM 317 >gi|289522278|ref|ZP_06439132.1| putative GGDEF domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504114|gb|EFD25278.1| putative GGDEF domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 806 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 83/157 (52%), Gaps = 13/157 (8%) Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+G LN S I+ Y + +SI FDID FK IND +GH VGD V+ L Sbjct: 651 IDALTGALNRKGLQDKLSDLITKCRDYGKDISIFLFDIDGFKLINDTYGHLVGDLVLKEL 710 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 S+ + R GG+EF ++ S Q A +A+ LRK +E+ S +H+ Sbjct: 711 SETVRKTIREDDVFVRWGGDEFLLISMISLNQ-ALHIAHRLRKNVES-----RSFSGMHV 764 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 TIS GI++ EP I RAD+ALY +K G+N V Sbjct: 765 TISIGISQYLPDEPFERAIERADKALYNSKSRGKNSV 801 >gi|148378336|ref|YP_001252877.1| GGDEF/HD domain protein [Clostridium botulinum A str. ATCC 3502] gi|153931217|ref|YP_001382735.1| GGDEF/HD domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153935963|ref|YP_001386286.1| GGDEF/HD domain-containing protein [Clostridium botulinum A str. Hall] gi|153938239|ref|YP_001389700.1| GGDEF/HD domain-containing protein [Clostridium botulinum F str. Langeland] gi|148287820|emb|CAL81886.1| putative signaling protein [Clostridium botulinum A str. ATCC 3502] gi|152927261|gb|ABS32761.1| GGDEF/HD domain protein [Clostridium botulinum A str. ATCC 19397] gi|152931877|gb|ABS37376.1| GGDEF/HD domain protein [Clostridium botulinum A str. Hall] gi|152934135|gb|ABS39633.1| GGDEF/HD domain protein [Clostridium botulinum F str. Langeland] Length = 567 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 9/172 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L D L+ + NH F +L NE LS++F DIDYFK ND +GH G Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 248 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210 D+V+ + + L V R GGEEFA +SEQ+A +A +RK IE + Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGE 308 Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261 + P+ ++T+S GI+ +K +I AD ALY AK +NRV ++ I Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360 >gi|146339374|ref|YP_001204422.1| hypothetical protein BRADO2356 [Bradyrhizobium sp. ORS278] gi|146192180|emb|CAL76185.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 379 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 8/166 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + LS D L+G L+ AF S + L+ D+D+FK +NDN GH GD Sbjct: 157 LRNLSLRDGLTGALSRRAFRSEGERLRALAERHRHPLTCALLDVDHFKSVNDNHGHAAGD 216 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V++ + V +GRLGGEEF +S +A + +R + + I S Sbjct: 217 LVLSKVVGACQNVLRASDVIGRLGGEEFGIILPHTSLDDAMAVLEKMRSAVADLSIESPS 276 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 GP I IT S G + +P ++ RAD+A+Y AK GRN+V+ + Sbjct: 277 GP-IRITASFGAVDLTPGQPFDAMLARADRAMYAAKNGGRNQVIAW 321 >gi|332142595|ref|YP_004428333.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Alteromonas macleodii str. 'Deep ecotype'] gi|327552617|gb|AEA99335.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Alteromonas macleodii str. 'Deep ecotype'] Length = 477 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 95/181 (52%), Gaps = 9/181 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIV-FFDIDYFKQIN 143 +EL + ++ +L+ +D L+ + N AF+ SL + N++ +V D+D+FK IN Sbjct: 285 RELRSANLKLEKLAYVDALTHIPNRRAFLDSLKKFLHLACRNKQAILVGIADVDHFKSIN 344 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH GD V+ ++ L +F +GR+GGEEFA + + A L R+ I Sbjct: 345 DQFGHAFGDDVLVTVAQTLQKLFRQEDCIGRIGGEEFAFCMSLPTPRAANQLLERFRETI 404 Query: 204 --ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 ++ I G ++ ++I A ++ I ++ AD ALY AK SGRN V C D+ Sbjct: 405 CHLHTTQPILKGRNVTVSIGAVYTQKTENTEIKALLKAADDALYKAKNSGRNAVECTLDV 464 Query: 262 E 262 + Sbjct: 465 D 465 >gi|170750974|ref|YP_001757234.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831] gi|170657496|gb|ACB26551.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831] Length = 281 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 16/172 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ L+ F+ + S + S++ D+D FKQIND +GH GD Sbjct: 109 LRRLADTDHLTDALSRRRFLQICEEVWARTQSGDTPSSVLMLDLDRFKQINDRYGHSAGD 168 Query: 153 KVI-AFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 V+ AF+ D L V +GR+GGEEFA G+ EA +A LR + + Sbjct: 169 TVLKAFVETCRDSLRAVD----VIGRMGGEEFAILVTGTVLAEAQAIAEQLRHAVAQRPV 224 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + GP + I++S G+A E +S + RAD ALY AK +GR+ V C ++ Sbjct: 225 RLEHGP-LPISVSIGLAAFGPSESMSATLRRADAALYAAKHAGRDCVRCAAE 275 >gi|117621244|ref|YP_855275.1| GGDEF/response regulator receiver domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562651|gb|ABK39599.1| GGDEF/response regulator receiver domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 269 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 13/191 (6%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNE 127 ++ I LLL + G + F ++ +L+ D L+GL N A+ + Sbjct: 80 AVVILLLL--VMGMLALHQFNRSRKMRRLAMTDDLTGLHNRRQIQAKGQAWFKQAREHGR 137 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 LS++ DID+FKQ+ND GH +GDKV+A ++ + + VGR GGEEF + Sbjct: 138 TLSVLQLDIDHFKQVNDTLGHHMGDKVLAEVASCVAAQLRSLDRVGRNGGEEFLVLLPDT 197 Query: 188 SEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALY 245 S EA +A +R + +I+ + G +H++I G A+ E ++ RAD+A+Y Sbjct: 198 SLDEAVEVAERIRHRVAQLRIDGMPEGQPVHVSI--GCAQYSPLDESFGDLVQRADEAMY 255 Query: 246 VAKKSGRNRVV 256 AK++GRN+V+ Sbjct: 256 RAKQAGRNQVM 266 >gi|77919843|ref|YP_357658.1| response regulator/GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380] gi|77545926|gb|ABA89488.1| response regulator/FOG:GGDEF domain protein [Pelobacter carbinolicus DSM 2380] Length = 400 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 94/186 (50%), Gaps = 10/186 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L+E+ + +LS D L+GL N F S L ++LS++ DIDYFK++ Sbjct: 215 LEEVDGQREKAERLSLQDPLTGLPNRRHFFSVLREALEPGHRDGQELSLMLIDIDYFKEV 274 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GD+V+A ++ + R GGEEFA G+S Q + L + Sbjct: 275 NDQLGHMAGDEVLAIVAHIIGDSVRQCDTACRYGGEEFAVLLPGASSQTVETIGRRLMEK 334 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 IE++ + ++ + +T+S G IS +I RAD+ALY AK SGRN++ +S Sbjct: 335 IESADL-LAGRSEVSLTVSVGFVSLSPGSKISIEEVIGRADRALYEAKNSGRNQLRMWSS 393 Query: 261 IENNTC 266 + C Sbjct: 394 DSHGCC 399 >gi|117928368|ref|YP_872919.1| diguanylate cyclase [Acidothermus cellulolyticus 11B] gi|117648831|gb|ABK52933.1| diguanylate cyclase [Acidothermus cellulolyticus 11B] Length = 440 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 9/174 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +R D +GL N + + I+ S E ++I+ D+D+FK +ND FGH +GD Sbjct: 244 LRHAARTDPKTGLANAAYWREVAEREIARARSGGESVAILLVDVDHFKAVNDRFGHLIGD 303 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 V+ ++ L FVGR GGEEF GS ++AA+ A +R+ I + ++ Sbjct: 304 DVLRAVAGGLTHGLRPRDFVGRFGGEEFVILLAGSDLEQAAVAAERVRQHIAHLTVDTPL 363 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + +T+S G+A R + + ++ AD ALY AK++GRN V + + Sbjct: 364 HGDPVSVTVSVGVAAFRENGHSVLELLDAADAALYEAKRAGRNCVRVATGVRQQ 417 >gi|322804607|emb|CBZ02159.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 567 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 9/172 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L D L+ + NH F +L NE LS++F DIDYFK ND +GH G Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 248 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210 D+V+ + + L V R GGEEFA +SEQ+A +A +RK IE + Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGE 308 Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261 + P+ ++T+S GI+ +K +I AD ALY AK +NRV ++ I Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360 >gi|304311555|ref|YP_003811153.1| hypothetical protein HDN1F_19250 [gamma proteobacterium HdN1] gi|301797288|emb|CBL45508.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length = 597 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N A+ S LS+ DID+FK+IND GH GDKV+ ++ Sbjct: 440 DALTGLPNRQAYDDYILREFSRWKRRGHALSMAVIDIDFFKRINDTLGHLRGDKVLKLVA 499 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHI 218 ++ + FV R GGEEF A L ++Q+A A +R+ IE N + + + Sbjct: 500 REIQDCVRSEDFVARYGGEEF-VALLPDTDQDAGRTAMEKVRQHIEVCPFNFHNQRVV-V 557 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+A+ + I ++ RADQALY AK GRNRV Sbjct: 558 TVSIGVAQFQEGDSIESVFDRADQALYRAKGGGRNRV 594 >gi|156976625|ref|YP_001447531.1| hypothetical protein VIBHAR_05399 [Vibrio harveyi ATCC BAA-1116] gi|156528219|gb|ABU73304.1| hypothetical protein VIBHAR_05399 [Vibrio harveyi ATCC BAA-1116] Length = 480 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 9/171 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147 ++L ++ ++ +L+ D L+ L N I ++L + L+++ FDID FK IND FG Sbjct: 297 RQLTMANQQLFELTLTDPLTKLYNRRHLIERLATLSNVRRNLTVMVFDIDDFKSINDQFG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+ I +++ V M + R+GGEEFA S +EA +LA + + S Sbjct: 357 HVVGDQAIIAVANTARTVIDERMTLARIGGEEFALVTASLSAEEAEVLARTICTQVHCSP 416 Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + G +I ++IS G A + ++P + ADQ +Y K +G+NR V Sbjct: 417 VTL-DGQTISVSISLGCAYYPKFDEQP---SLQDADQLMYRGKANGKNRAV 463 >gi|146341429|ref|YP_001206477.1| response regulator PleD [Bradyrhizobium sp. ORS278] gi|146194235|emb|CAL78257.1| response regulator PleD (with diguanylate cyclase and response regulator receiver domains) [Bradyrhizobium sp. ORS278] Length = 473 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 14/195 (7%) Query: 81 LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNH-------SAFISSLGSYNEK 128 LL I K + + R + +++ D L+GL N S S + Sbjct: 264 LLARARTQIRKRRYTDHLRDNVQNSIEMAITDALTGLHNRRYMETHLSTLADQAASRGKP 323 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+++ D+DYFK IND +GH GD V+ + ++ R GGEEF + Sbjct: 324 LALMMLDLDYFKSINDTYGHDAGDDVLREFAMRVRKSIRGIDLACRYGGEEFVIVMPETD 383 Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHK-EPISTIIYRADQALYV 246 A ++A LR+ + N ++ G I +T+S GI+ K EPI+ ++ RAD ALY Sbjct: 384 LHVAGMVAERLRRSVANEPFSVHKGEKRIDVTVSIGISTLEQKGEPIADVMKRADTALYR 443 Query: 247 AKKSGRNRVVCFSDI 261 AK GRNR V + + Sbjct: 444 AKNEGRNRAVAIAPV 458 >gi|160900556|ref|YP_001566138.1| PAS/PAC sensor-containing diguanylate cyclase [Delftia acidovorans SPH-1] gi|160366140|gb|ABX37753.1| diguanylate cyclase with PAS/PAC sensor [Delftia acidovorans SPH-1] Length = 1015 Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 9/172 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHP 149 +++ L+ D L+G+ N AF+ L + L +++ DID+FKQ+ND +GH Sbjct: 837 SQLETLALTDALTGIPNRRAFMERLTMELDHLRSGLVAHSTLIMLDIDHFKQVNDGYGHA 896 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD V+ L + VGRLGGEEFA + + A LR+ + I+ Sbjct: 897 VGDIVLKELLASVAQEMRKEDMVGRLGGEEFAVLLSDTDAEVGLRRAESLRETVAARAID 956 Query: 210 ISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSD 260 +HITIS G+ E + + + RAD ALY +K++GRN+ +S+ Sbjct: 957 AGLAGDLHITISLGVYELQRSDASAQGCLERADAALYYSKRNGRNQSTLWSE 1008 >gi|328958181|ref|YP_004375567.1| putative diguanylate cyclase or phosphodiesterase [Carnobacterium sp. 17-4] gi|328674505|gb|AEB30551.1| putative diguanylate cyclase or phosphodiesterase [Carnobacterium sp. 17-4] Length = 324 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 7/201 (3%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 L Y L+ + LV+ S+ + L +I +LK L + N + +++D L+GL N AF Sbjct: 119 LVYFLIYSSFLVLSSLVVILATAFIE-DLLKNLALYLNE-KEHAKMDFLTGLYNMRAFNK 176 Query: 121 SLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 E +++ DIDYFK INDN GH G+ ++ L+ L + V R+ Sbjct: 177 KWQRIQADKTIETTALMMIDIDYFKWINDNHGHENGNFILRQLATSLKIGAPDNELVYRV 236 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 GGEEF +A ++R I + + + +G SI IT+S G+A + + Sbjct: 237 GGEEFCLILNDLPYVAQKEIAENIRSSIADKEFVLENGTSIQITVSIGLAASAQSKDMKK 296 Query: 236 IIYRADQALYVAKKSGRNRVV 256 + AD+ LY+AK GRN+V+ Sbjct: 297 LFRLADRCLYMAKNQGRNKVI 317 >gi|313498606|gb|ADR59972.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1] Length = 363 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 30/232 (12%) Query: 44 FIANIFLFYIGLTPFY--GLEYILVENLSLVIISITISLLLGY----ISGSILKELFISY 97 F + + ++ L PFY +E +E L+ ++ +S L+ Y I + L ++S Sbjct: 139 FFCAMVITWVMLNPFYHTRIEPDALEGAMLISYAVFLSGLVSYSYLQIRKTKLHNFYLSK 198 Query: 98 NRISQLSRIDCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + Q + +D L+ + N +F++ + + + L+++ DID FK++ND FGH VG Sbjct: 199 VLLEQ-AYVDALTDIPNRRSFMAQADRQLRMATSGQYLAMI--DIDNFKRVNDRFGHDVG 255 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG----SSEQEAAILANDLRKIIENSQ 207 D+V+ ++ + F RLGGEEFA G +EQ A L +R+ Sbjct: 256 DEVLKRVALHIKTSMADQAF-ARLGGEEFAIFFEGLDQQGAEQRVAALCQRVRE------ 308 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + P +TIS G+A+ E ++T + RADQALY AK +G++R V +S Sbjct: 309 -DTGEHP---VTISIGLAKINRGESLTTALVRADQALYEAKHTGKDRFVSWS 356 >gi|83643551|ref|YP_431986.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631594|gb|ABC27561.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 584 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 94/192 (48%), Gaps = 22/192 (11%) Query: 83 GYISGSILKELFISY---NRISQLSR---IDCLSGLLNHSAFISSLGSY-------NEKL 129 G+ GS+ + + +S +R+++L R D L+GL N F + + L Sbjct: 378 GFQIGSLTEMVLLSLALSSRVNELQRKTYTDALTGLFNRRHFDDKFATEFHRAQQSKQPL 437 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DID FKQ ND +GH VGD + ++ L P R GGEEFA + Sbjct: 438 TLLVIDIDCFKQFNDTYGHNVGDHALKEVARILAKGVRKPNCPCRYGGEEFAVILPNTDH 497 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYV 246 A LAN LR +E SG ++IS G+A H E P + + RAD ALY Sbjct: 498 DAAMSLANRLRVKVEE---ETESG--YKLSISVGVASMAHDEFDCP-NKLFERADYALYT 551 Query: 247 AKKSGRNRVVCF 258 AK+ GRNRV+ + Sbjct: 552 AKQQGRNRVIDY 563 >gi|83589092|ref|YP_429101.1| diguanylate cyclase [Moorella thermoacetica ATCC 39073] gi|83572006|gb|ABC18558.1| diguanylate cyclase (GGDEF domain) [Moorella thermoacetica ATCC 39073] Length = 357 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 8/160 (5%) Query: 107 DCLSGLLNHSAFISS----LGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+G+ N+ F+ + L S + L+++ DIDYFK+IND +GH G++V+A L+ Sbjct: 189 DDLTGIYNYRYFVQAFSNLLNSRQQPRYLAVLMLDIDYFKEINDAYGHLTGNRVLAELAT 248 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L V R GGEEFA + A +A +RK I + G +IH+T+ Sbjct: 249 ILKECTREQDVVTRFGGEEFALILPDTDYHGALQVAERIRKAIAEHTFQ-AEGTAIHVTV 307 Query: 221 SAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 SAG+A II RAD+ALY AK +GRN V + Sbjct: 308 SAGVAVWPVDGTDKKDIIARADRALYQAKTTGRNSVCAYQ 347 >gi|251766786|ref|ZP_04819808.1| diguanylate cyclase [Burkholderia mallei PRL-20] gi|243064671|gb|EES46857.1| diguanylate cyclase [Burkholderia mallei PRL-20] Length = 507 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+R D L+GL N AF +L S LS++F DID FK ND++GH G Sbjct: 335 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 394 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D V+ + L V V V R GGEEF + + AA +A +R+ + + I Sbjct: 395 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 454 Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255 P +T+S G+ H + +T++ AD ALY AK +GRNRV Sbjct: 455 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 501 >gi|237730295|ref|ZP_04560776.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226905834|gb|EEH91752.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 462 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 9/169 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK-LSIVFFDIDYFKQINDNFGHPVG 151 + Q + D L+ LLN FI SL + K ++ DIDYFKQINDN+GH G Sbjct: 295 VKQENGKDSLTQLLNRR-FIPTIMRREISLALHARKPFTLAMLDIDYFKQINDNYGHNTG 353 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + ++ + + +V R GGEEF + S + +A+I+ LR I + S Sbjct: 354 DMTLKNVAAVIYDHIRSSDYVFRYGGEEFMILLVESDKSQASIILETLRMKIAEMCMAAS 413 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + S IT+S GIAE + ++ +AD+ALY+AK +GR+R+ + + Sbjct: 414 AAESFSITVSIGIAEYDYHPDYKQLVDKADRALYLAKSNGRDRIEVYQE 462 >gi|153831702|ref|ZP_01984369.1| ggdef family protein [Vibrio harveyi HY01] gi|148872212|gb|EDL71029.1| ggdef family protein [Vibrio harveyi HY01] Length = 337 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LS L N AF S L N+ +++V DID+FK NDN+GH GD VI ++ +L Sbjct: 181 DGLSNLYNRRAFDSDLQMLIDSNQAMTLVMLDIDHFKAFNDNYGHLFGDTVIKAIARRLQ 240 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221 + R GGEEFA S + A+ LR++IE ++ + SG + IT S Sbjct: 241 QSCRDGISAYRFGGEEFALIVPNKSLRIGRQYADTLRRMIEKLRVRDKRSGSQVQSITAS 300 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE + + +++ +AD+ LY AK+ GRNRV+ Sbjct: 301 FGVAEYEVGDTLDSLVNKADKQLYEAKQLGRNRVM 335 >gi|258619914|ref|ZP_05714955.1| GGDEF family protein [Vibrio mimicus VM573] gi|258587784|gb|EEW12492.1| GGDEF family protein [Vibrio mimicus VM573] Length = 323 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 30/264 (11%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70 +W C F P F I+ S F+ +++ I G+ Y ++N Sbjct: 69 VWSC-------FVPILFYIFTSARFAFLTSSLFLILQ-----------SGIVYWQLQNEP 110 Query: 71 LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125 L+ S+ + L YI ++ ++ R + L+ D L+ N + +S + Sbjct: 111 LISWSVLLHLSFAYIGIWVVSHVYEQNRRKIENSLLYLASRDPLTSAHNRLSLTTSFQHF 170 Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + LS++ D+DYFK IND FGH GDKV+ + L V G R+GGEEF Sbjct: 171 EQFNDQTTLSLLVIDLDYFKSINDQFGHDTGDKVLIETTRLLAQVVGDNNLY-RIGGEEF 229 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 S ++A + LR II + I + +TIS G+ E + ++ ++ A Sbjct: 230 CVTLFDQSLEQAERVCERLRAII-SQHIFAFGDKRVQVTISIGVCEYQPGDQLNDLLKFA 288 Query: 241 DQALYVAKKSGRNRVVCFSDIENN 264 D LY AKK+GRN+V F + Sbjct: 289 DIELYRAKKAGRNQVRLFKHAQTQ 312 >gi|255092109|ref|ZP_05321587.1| putative signaling protein [Clostridium difficile CIP 107932] gi|255649628|ref|ZP_05396530.1| putative signaling protein [Clostridium difficile QCD-37x79] Length = 220 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 10/153 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ + N +F Y EK ++V DID FK INDN+GH GD VI +++ + Sbjct: 73 DGLTNVYNRKSFDIMYEKYREKDDNFALVMIDIDNFKLINDNYGHKFGDTVIKGITNTIC 132 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V+ V R GGEEF+ S +E A + +++R I N + N + +TISAG Sbjct: 133 VMLEQDDKVFRYGGEEFSVLIRNKSGEEVADIIDNIRVAIANKKWN----DDVTVTISAG 188 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +A H ++ AD+ LY AK+ GRN+VV Sbjct: 189 VA---HISDSKDVLEEADKNLYKAKQLGRNKVV 218 >gi|157962146|ref|YP_001502180.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157847146|gb|ABV87645.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 350 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 10/160 (6%) Query: 107 DCLSGLLNHSAF----ISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N AF IS + S+N + S++ DIDYFK+ ND GH +GDKV+A+++ Sbjct: 182 DQLTSLNNRRAFDKEVISHIDSFNLSNVESSLLVVDIDYFKKFNDVHGHLIGDKVLAYVA 241 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG---PSI 216 L FV R GGEEF +S Q+A +A ++R I + I P Sbjct: 242 QALKNAVKGEDFVARYGGEEFVVLLPNTSHQDAHKVAENIRIKIAGRNLTIGKEKKLPLG 301 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++T+S G+A + + RAD+ALY AK SGRN V+ Sbjct: 302 NVTVSVGVASLKASDDKDSYFIRADEALYRAKSSGRNCVI 341 >gi|153827501|ref|ZP_01980168.1| diguanylate cyclase [Vibrio cholerae MZO-2] gi|149738577|gb|EDM52932.1| diguanylate cyclase [Vibrio cholerae MZO-2] Length = 310 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 9/170 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ LS +D L+ + N +F I G + S++ FDID FK +ND GHP Sbjct: 134 QRLKILSEMDTLTEVHNRRSFSSLLSQSIKEYGIHGVTFSLILFDIDKFKWVNDTLGHPA 193 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI ++ + +GRLGGEEF S+ +A +A LR + + + Sbjct: 194 GDDVIKYVVKVIQQELHFTDVIGRLGGEEFGIILRDSNHDKAFKVAEKLRIRLAETMCEL 253 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + S+ +TIS G+ + + + +I RAD+A+Y +K GRN+ C+ Sbjct: 254 ETC-SVRVTISLGVTQIMPNDSSMRHLISRADKAMYYSKMHGRNQTCCYE 302 >gi|120612636|ref|YP_972314.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gi|120591100|gb|ABM34540.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 591 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 31/224 (13%) Query: 57 PFY--GLEYILVENLSLVIISITISLL-----LGYISGSI---LKELFISYNRISQ---- 102 P Y G + + V L+ S+T SLL L ++ S+ ++E ++ ++ +Q Sbjct: 364 PRYPDGTDTLEVAQLNRSFQSMTASLLEREQELSRLNTSLENQVRERTLALHQANQELEN 423 Query: 103 LSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N F +L +Y + +++ D D+FK++ND GH GD V+ Sbjct: 424 LAVRDPLTGLYNRRRFDEALQAYTARCRELGHRFALMIVDADHFKRVNDTHGHQTGDAVL 483 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGP 214 L+ + + F+ R GGEEF +E +A +R + ++ P Sbjct: 484 RHLAGVITGCVRSTDFIARFGGEEFVVLMPEPRDREEGRFVAEKIRLAVGHTPF-----P 538 Query: 215 SI-HITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255 + H+T+S G+A CH EP++TI+ RAD+ALY AK+ GR+RV Sbjct: 539 GVGHLTVSIGLAF-CHGGGEPLATILERADKALYQAKEEGRDRV 581 >gi|85711644|ref|ZP_01042701.1| Signaling protein with membrane-bound sensor domain and GGDEF domain [Idiomarina baltica OS145] gi|85694504|gb|EAQ32445.1| Signaling protein with membrane-bound sensor domain and GGDEF domain [Idiomarina baltica OS145] Length = 394 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 16/168 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 ++ +L+ D L+ L S FI + E+ ++ D+D+FKQIND +GH G Sbjct: 228 QLRRLAERDTLTELDTRSHFIKRAEALLERALRENTAFCLLMIDVDHFKQINDTWGHTRG 287 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++ + VGR GGEEF A + +EA LA L + +N Sbjct: 288 DEVLKQVAKTIRQSLRRVDVVGRFGGEEFIVAMPNTHHKEAVKLAQRL-----TANVNAI 342 Query: 212 SGPS----IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 PS + ++I+ GIA + ++ + +I RAD+ LY K++GRNRV Sbjct: 343 ELPSPLNQVSVSITVGIAMKSNERSLDLLIQRADEMLYKGKRNGRNRV 390 >gi|260459132|ref|ZP_05807387.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] gi|259034686|gb|EEW35942.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] Length = 383 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 13/200 (6%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-----S 120 E LSL+++ +++ + G +S ++ + ++R + L+ D L+GLLN A + Sbjct: 185 AEELSLIVVIASMTGI-GALSLALNQGRLARHHRRNALT--DPLTGLLNRRALFDMHGNA 241 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 +G++ ++V FD+D FK IND FGH GD+V+ + +L R+GGEEF Sbjct: 242 PVGAFT---AVVVFDLDNFKTINDEFGHAAGDEVLRVFASELAGNLRQTDVAARMGGEEF 298 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYR 239 A + + A +R +I G S+ T+SAG A P ++ Sbjct: 299 ALVLKRTLPETVEAAAERIRTAFAARRIETEMG-SLTCTVSAGFAFGAKDGPSFDKVLSA 357 Query: 240 ADQALYVAKKSGRNRVVCFS 259 AD+ALY AK+ GRNRVV S Sbjct: 358 ADKALYDAKRGGRNRVVIAS 377 >gi|227327225|ref|ZP_03831249.1| putative signaling protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 235 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 4/151 (2%) Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ + N A I + E+ +++ DID+FKQ+ND +GHP GD VI L ++ Sbjct: 84 DPLTSVYNRGAIIEHINHALERNQAALIVLDIDHFKQVNDTYGHPTGDAVICDLVSRVQQ 143 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 + T +GR+GGEEF G + +A LA+ L + + +++ +S P +T S G+ Sbjct: 144 ILNTTSSIGRVGGEEFTILLEGHTLMQAVSLASRLHQDL--NRMPLSVLPQQRVTASFGV 201 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + K + AD ALY AK+ GRNRV Sbjct: 202 SWAPQKTRFDALYGAADAALYQAKEKGRNRV 232 >gi|218549979|ref|YP_002383770.1| hypothetical protein EFER_2664 [Escherichia fergusonii ATCC 35469] gi|218357520|emb|CAQ90159.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] gi|325498354|gb|EGC96213.1| hypothetical protein ECD227_2451 [Escherichia fergusonii ECD227] Length = 472 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 9/161 (5%) Query: 107 DCLSGLLNHSAFIS-------SLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ LLN FI S+ ++ K ++ DIDYFKQIND +GH GD + + Sbjct: 307 DSLTQLLNRR-FIPTIMRREISIALHSRKPFALAMLDIDYFKQINDRYGHNAGDNTLKNV 365 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 S + + +V R GGEEF + + +A I+ +LR + +I S+ S + Sbjct: 366 SAMIYEHIRSSDYVFRYGGEEFMILLVETELSQAKIILENLRNKMAGLRIQASASESFSV 425 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 T+S G+AE + +I +AD ALY AK GRNRV F Sbjct: 426 TVSIGVAEYDYHPDYKLLIEKADSALYYAKSQGRNRVEVFQ 466 >gi|26990165|ref|NP_745590.1| GGDEF domain-containing protein [Pseudomonas putida KT2440] gi|24985103|gb|AAN69054.1|AE016538_3 GGDEF domain protein [Pseudomonas putida KT2440] Length = 363 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 30/232 (12%) Query: 44 FIANIFLFYIGLTPFY--GLEYILVENLSLVIISITISLLLGY----ISGSILKELFISY 97 F + + ++ L PFY +E +E L+ ++ +S L+ Y I + L ++S Sbjct: 139 FFCAMVITWVMLNPFYHTRIEPDALEGAMLISYAVFLSGLVSYSYLQIRKAKLHNFYLSK 198 Query: 98 NRISQLSRIDCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + Q + +D L+ + N +F++ + + + L+++ DID FK++ND FGH VG Sbjct: 199 VLLEQ-AYVDALTDIPNRRSFMAQADRQLRMATSGQYLAMI--DIDNFKRVNDRFGHDVG 255 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG----SSEQEAAILANDLRKIIENSQ 207 D+V+ ++ + F RLGGEEFA G +EQ A L +R+ Sbjct: 256 DEVLKRVALHIKTSMADQAF-ARLGGEEFAIFFEGLDQQGAEQRVAALCQRVRE------ 308 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + P +TIS G+A+ E ++T + RADQALY AK +G++R V +S Sbjct: 309 -DAGEHP---VTISIGLAKVDRGESLTTALVRADQALYEAKHTGKDRFVSWS 356 >gi|83858472|ref|ZP_00951994.1| GGDEF family protein [Oceanicaulis alexandrii HTCC2633] gi|83853295|gb|EAP91147.1| GGDEF family protein [Oceanicaulis alexandrii HTCC2633] Length = 333 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 9/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 + +L + ++ + + D L+G+ N F S+ + S+V DID+FK+ Sbjct: 143 VNQLRSNLEKVREEAMTDALTGVANRKRFDESMRKSRREADLTGAPFSLVLCDIDHFKRF 202 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD++I F+S L V R GGEEF +S Q+A +A +R++ Sbjct: 203 NDTWGHQTGDQIIRFVSACLARYASDHHVVARYGGEEFGIVMPNTSLQDATEIAEKIRQV 262 Query: 203 IENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +E+ + + S+ + +IT+S G+++ E + +I R D LY +K+ GRNRV Sbjct: 263 VESKRLLRKSTNEDLGNITVSMGVSQFRPSEVVECLIERCDANLYKSKQKGRNRVT 318 >gi|229527885|ref|ZP_04417276.1| hypothetical protein VCG_000959 [Vibrio cholerae 12129(1)] gi|229334247|gb|EEN99732.1| hypothetical protein VCG_000959 [Vibrio cholerae 12129(1)] Length = 312 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 9/170 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ LS +D L+ + N +F I G + S++ FDID FK +ND GHP Sbjct: 136 QRLKILSEMDTLTEVHNRRSFSSLLSQSIKEYGIHGVTFSLILFDIDKFKWVNDTLGHPA 195 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI ++ + +GRLGGEEF S+ +A +A LR + + + Sbjct: 196 GDDVIKYVVKVIQQELHFTDVIGRLGGEEFGIILRDSNHDKAFKVAEKLRIRLAETMCEL 255 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + S+ +TIS G+ + + + +I RAD+A+Y +K GRN+ C+ Sbjct: 256 ETC-SVRVTISLGVTQIMPNDSSMRHLISRADKAMYYSKMHGRNQTCCYE 304 >gi|319789147|ref|YP_004150780.1| diguanylate cyclase [Thermovibrio ammonificans HB-1] gi|317113649|gb|ADU96139.1| diguanylate cyclase [Thermovibrio ammonificans HB-1] Length = 556 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N L +K +++ DID+FK+IND +GH GD V+ L+ Sbjct: 401 DYLTGLFNRQYLFDYLKETLKKAEEEGFPVAVALIDIDFFKRINDTYGHLTGDCVLKELA 460 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L F V R GGEEF S+ + A +R+ E + + +T Sbjct: 461 KILKGSFRESDCVARYGGEEFVVVMPHSNLENACKKMERVRQKTEETPF---CEDKLKVT 517 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 SAG+ E E I +++ RAD+ LY AKKSGRNRVVC Sbjct: 518 FSAGVTEFKPGESIESLLERADKNLYEAKKSGRNRVVC 555 >gi|262377167|ref|ZP_06070392.1| LOW QUALITY PROTEIN: GGDEF family protein [Acinetobacter lwoffii SH145] gi|262307905|gb|EEY89043.1| LOW QUALITY PROTEIN: GGDEF family protein [Acinetobacter lwoffii SH145] Length = 329 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 91/181 (50%), Gaps = 9/181 (4%) Query: 89 ILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYN----EKLSIVFFDIDYF 139 +L E+ +S R I QLS+ID L+ L N + L N ++V D+D+F Sbjct: 140 VLFEILLSQWRHREQLIKQLSQIDPLTNLFNRRSINQCLDKLNAVATPNYALVLLDLDHF 199 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND++GH GD+ + +S L VGR GGEEF +S ++A +A Sbjct: 200 KKINDHYGHHKGDETLVEVSAVLNQQLRESDVVGRFGGEEFILVLKNTSLEKAEQVAERC 259 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 R I+ QI G I +T S GIA + ++ +ADQALY AK GRN ++ Sbjct: 260 RIAIQQLQIFSDEGELIPVTASFGIAISSAELRPQQLLSQADQALYQAKAGGRNLAKAYA 319 Query: 260 D 260 + Sbjct: 320 E 320 >gi|254507211|ref|ZP_05119348.1| ggdef family protein [Vibrio parahaemolyticus 16] gi|219549921|gb|EED26909.1| ggdef family protein [Vibrio parahaemolyticus 16] Length = 338 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 86/162 (53%), Gaps = 5/162 (3%) Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + Q + D L+ L N +F I +L +K+ +V DID+FK NDN+GH GD VI Sbjct: 175 VQQDALFDSLTSLYNRRSFDNDIKTLCQTGQKICLVLADIDHFKSYNDNYGHLFGDAVIK 234 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ +L + + R GGEEFA + A A+ LR+ IE I S+ Sbjct: 235 GIAKRLHINARDGVHAYRFGGEEFALIVPNKQLRIARQYADSLRRSIEKLSIKDKRSGSL 294 Query: 217 --HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +IT S G+AE E ++I RAD+ LY AK+ GRNRV+ Sbjct: 295 VANITASFGVAELEENESAESLIERADKLLYEAKQLGRNRVM 336 >gi|184159860|ref|YP_001848199.1| GGDEF domain-containing protein [Acinetobacter baumannii ACICU] gi|183211454|gb|ACC58852.1| GGDEF domain protein [Acinetobacter baumannii ACICU] Length = 384 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 8/183 (4%) Query: 89 ILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFK 140 IL E+ ++ R I +LS+ID L+ +LN + + L + +E+ +++ DID+FK Sbjct: 198 ILFEILLTQWRQRETYIQRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFK 257 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND +GH GD+V+ ++ L +GR GGEEF + +A +A R Sbjct: 258 KINDIYGHHQGDQVLIEIAQCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCR 317 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ I + IH++ S GI+ +I +ADQALY K SGRN+V F Sbjct: 318 QALQELTIFNNQNIQIHVSASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQ 377 Query: 261 IEN 263 + Sbjct: 378 LPQ 380 >gi|153008283|ref|YP_001369498.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] gi|151560171|gb|ABS13669.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] Length = 401 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 79/158 (50%), Gaps = 9/158 (5%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S D LS LLN F I + LS+V DID+FK IND GH +GD+VIA Sbjct: 222 SETDQLSTLLNRRGFEFRAEAAIEKSKRMRQALSLVLCDIDHFKAINDTHGHALGDRVIA 281 Query: 157 FLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 S +L R+GGEEFA G++ Q A A+ R + + I +G Sbjct: 282 AFSAELRKAANAKGGIAARIGGEEFAIILPGNTIQSAWRFADKTRLVCRDIHIPGRNG-G 340 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I T+S GIAE + S + RAD ALY AKK GRN Sbjct: 341 IEFTVSFGIAEMEFDDVFSDLYKRADGALYEAKKGGRN 378 >gi|121728900|ref|ZP_01681908.1| GGDEF family protein [Vibrio cholerae V52] gi|121628828|gb|EAX61289.1| GGDEF family protein [Vibrio cholerae V52] Length = 469 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ N +F L + + L+++ FDID FK IND FG Sbjct: 297 QQLEEANQKLSYLAKTDSLTDTANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 417 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 464 >gi|148545403|ref|YP_001265505.1| diguanylate cyclase [Pseudomonas putida F1] gi|148509461|gb|ABQ76321.1| diguanylate cyclase [Pseudomonas putida F1] Length = 645 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + +D L+GL N +A+ + + E L++ D+D+FK+INDN+GH GDKV Sbjct: 483 QKALLDPLTGLPNRAAWSEQVEREMLDWQENGGHLAMAILDLDHFKRINDNYGHLAGDKV 542 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++DQL F+ R GGEEF ++ AA +A LR +E + G Sbjct: 543 LKIVADQLRKRLRGRDFIARFGGEEFVLLLPQTTPAVAAQMAEVLRATVEACPFHF-KGE 601 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT S G+ E ++ RAD ALY AK+ GRNRV Sbjct: 602 RVVITTSIGLGAFRSGERSDQVLKRADAALYRAKEQGRNRV 642 >gi|332533626|ref|ZP_08409486.1| hypothetical protein PH505_as00180 [Pseudoalteromonas haloplanktis ANT/505] gi|332036907|gb|EGI73367.1| hypothetical protein PH505_as00180 [Pseudoalteromonas haloplanktis ANT/505] Length = 317 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 107/208 (51%), Gaps = 26/208 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYN 126 L +V+IS LLL +S IL L S + +S L+ D L+ L N F ++ + Sbjct: 113 LQIVLIS---HLLLATLSALILPFLLFSNSEYTLSNLANTDSLTQLFNRRGFFNNAKAVL 169 Query: 127 EK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ +SI+ DID+FK +ND +GH GD+ I +++ + F R+GGEE Sbjct: 170 KQPNNNDINVSIIILDIDFFKHVNDKYGHDTGDQAIKWIAQHIKEQFIDEGICARIGGEE 229 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP------SIHITISAGIAERCH-KEP 232 FA S + A A LR+ NIS P I +++SAG++ + K Sbjct: 230 FAILLPDYSLRAAKEYAEHLRE-------NISKHPFYYQNAHIKLSVSAGVSHSVNGKMS 282 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ AD+ LY+AK++GR++VV F + Sbjct: 283 VKDLLSLADKRLYLAKETGRDKVVSFDE 310 >gi|307824446|ref|ZP_07654671.1| diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307734430|gb|EFO05282.1| diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 351 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 9/165 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 + ++ D L+GLLN AF L Y E +L ++ DID+FKQ+ND FGH +GD V Sbjct: 183 ETAKTDALTGLLNRRAFDQKLNEYIEIHKQNDVELCLLILDIDHFKQVNDTFGHQMGDNV 242 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 + + ++ + R GGEE A + +A +A +R + + + S Sbjct: 243 LRYTANLMKQHITEHHCAARYGGEEMAIIMPNTPLNKAMEIAEKIRTSLAQHPLKLKGSK 302 Query: 214 PSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 SI +TIS G++ + I ++I RAD A+Y AK +GRN+V+ Sbjct: 303 KSIGKVTISIGVSSFKINDSIESLIERADMAMYRAKDNGRNQVMA 347 >gi|228918028|ref|ZP_04081558.1| GGDEF domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841616|gb|EEM86730.1| GGDEF domain protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 351 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 24/233 (10%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 S+F + F N++ +I P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SMFTRWIWF--NVYSLFILAVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F I + N L ++ DID+FK + Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNNSLCLLLIDIDHFKSV 236 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + L V P R GGEEFA + +R Sbjct: 237 NDTYGHPAGDEVLKQIGRILREVSMFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 296 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 297 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPERFIQAADDALYYSKRNGRNQV 347 >gi|226953371|ref|ZP_03823835.1| GGDEF domain-containing protein [Acinetobacter sp. ATCC 27244] gi|294651925|ref|ZP_06729214.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|226835909|gb|EEH68292.1| GGDEF domain-containing protein [Acinetobacter sp. ATCC 27244] gi|292822157|gb|EFF81071.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 397 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 126/276 (45%), Gaps = 27/276 (9%) Query: 13 LCHEKNL-ESFSPHTFMIY-------FSIFFSIFIATVIFIANIFLFYIGLTPFYG-LEY 63 LCH L SFSP T ++Y +F I + A I L + + YG L+Y Sbjct: 119 LCHTSYLIGSFSPATMVVYVSVVAVGLVLFNRKMIYCALIPATIALLFCNILSLYGVLQY 178 Query: 64 ILVENLSLV---------IISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCL 109 + N ++ + S+ LL I+ L E+ ++ R I LSR+D L Sbjct: 179 APLFNPKILNQAEMHPFWVGSMLFFLLPILIACLFLFEILLTQWRTRETAIQALSRLDPL 238 Query: 110 SGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 + ++N + + L N++ S+V D+D+FK IND FGH +GD+V+ ++ L Sbjct: 239 TNVMNRRSISNHLEKLNKQPNSFYSVVLLDLDHFKNINDEFGHSMGDQVLVHVAKCLSNN 298 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 +GR GGEEF ++ +A +A R I + ++ S GI+ Sbjct: 299 VRDQDLIGRFGGEEFILLLPNTTAIQAKNVAERCRLAIADMCFIAEDQQQFSVSASFGIS 358 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + ++ +ADQALY K SGRN + F D+ Sbjct: 359 SSLNANEPHLVVSQADQALYAVKASGRNNIQIFGDL 394 >gi|197123948|ref|YP_002135899.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. K] gi|196173797|gb|ACG74770.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. K] Length = 322 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 ++ +L + R+ + + D L+GL N AF L Y++ +S++ D+D+FK Sbjct: 126 TLQDQLRETQRRLREQTLTDDLTGLKNRRAFDERLQEEFRRAHRYSDPVSLIMIDLDHFK 185 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND +GHP GD V+ S+QL P R GGEEFA + A +A + Sbjct: 186 LVNDRYGHPFGDLVLRGASEQLRASTRDPDICARYGGEEFAVILPKTHLSGALAVAERIW 245 Query: 201 KIIENSQINI---SSGP--SIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGR 252 K + + S+GP SI +T S GIA K+ P + + Y AD+ALY AKK+GR Sbjct: 246 KELSARSYPVPAGSTGPETSIQVTASMGIAFYPSKDIGSPEALVRY-ADEALYQAKKAGR 304 Query: 253 NRVVCF 258 N +C Sbjct: 305 N-TICL 309 >gi|115525386|ref|YP_782297.1| response regulator PleD [Rhodopseudomonas palustris BisA53] gi|115519333|gb|ABJ07317.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris BisA53] Length = 457 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N S L G+ L+++ DIDYFK+IND++GH GD V Sbjct: 290 EMAITDGLTGLHNRRYMESHLATLAEQAGARGRPLALMMLDIDYFKKINDSYGHDAGDDV 349 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + ++ R GGEEF + A ++A LR+ I I G Sbjct: 350 LREFAVRIKKSIRGIDLACRYGGEEFVVVMPETDAHVAGLVAERLRRAIAGEPFAIEKGA 409 Query: 215 -SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 I +TIS G++ K EP++ ++ RAD ALY AK GRNRVV + Sbjct: 410 RRIEVTISIGLSTLEKKGEPVADLLKRADVALYRAKHDGRNRVVAAA 456 >gi|328470536|gb|EGF41447.1| GGDEF domain-containing protein [Vibrio parahaemolyticus 10329] Length = 456 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 10/148 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GLLN F S + +L S++ D D K+IND +GH VGD+VI ++D Sbjct: 308 DDLTGLLNRRVFKDS--EFKRRLKTAPYSVIAIDGDRIKRINDRYGHHVGDEVIEIIADA 365 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + VF T ++ R GG+EF A G S ++++LA LR +++++++ I +++S Sbjct: 366 MRKVFRTSDYLVRTGGDEFIAILPGCSISQSSMLAKKLRSVVKDNRLKT---LDIEVSVS 422 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKK 249 G+A E + +I RAD+ LY KK Sbjct: 423 TGVAVNESHESLQDVIVRADEDLYEMKK 450 >gi|254293944|ref|YP_003059967.1| diguanylate cyclase [Hirschia baltica ATCC 49814] gi|254042475|gb|ACT59270.1| diguanylate cyclase [Hirschia baltica ATCC 49814] Length = 347 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-NEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F L NE L ++ DID+FK ND +GH GD+VI F++ Sbjct: 181 DGLTGVANRKQFDEVLQRRINESLESGSDLCLIICDIDFFKNFNDTWGHQTGDQVIRFVA 240 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSG-PSIH 217 + L V R GGEEFA + A A +RK IE+ + I S+G P Sbjct: 241 NSLAQKAVNESLVARYGGEEFAIIMPRTILDTAFEFAESVRKTIESKKLIRRSTGEPLGQ 300 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T+S GIA E S +I RAD LY +K++GRNR+ SD Sbjct: 301 VTVSFGIANYRSGEGASNLIERADHCLYHSKQTGRNRITLESD 343 >gi|238752589|ref|ZP_04614062.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380] gi|238709180|gb|EEQ01425.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380] Length = 350 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 14/185 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132 LLG ++ + L + + ++S D L+GL N H+ F S Y +++ Sbjct: 166 LLGLVTYRTARRLAENKEELLRISVRDGLTGLYNRRHWEHQLHNQF-DSCRRYQHGATLI 224 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQE 191 DID FK IND FGH VGD+ I L+++L++ VGR GG+EF A ++ EQ Sbjct: 225 LLDIDNFKSINDTFGHAVGDEAITVLAEELLLGLRAIDIVGRYGGDEFGAILPNTTAEQT 284 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250 +L K+ + + + P + + +SAGIA+ H + AD ALY+AK + Sbjct: 285 REVLVRIQEKL---AGLVFTQAPLLQLRVSAGIADYRHDMINYQQWLKAADSALYLAKDN 341 Query: 251 GRNRV 255 GRNR+ Sbjct: 342 GRNRI 346 >gi|309701784|emb|CBJ01096.1| putative diguanylate cyclase [Escherichia coli ETEC H10407] Length = 296 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+ + + S +L S + K L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 130 DFLTQVYSRSGLYEALKSLSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 189 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 190 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 248 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 249 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNR 285 >gi|303325683|ref|ZP_07356126.1| sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3] gi|302863599|gb|EFL86530.1| sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3] Length = 537 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/167 (38%), Positives = 90/167 (53%), Gaps = 7/167 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDK-V 154 +R LS +D L+G N F + L + L+++ D+D FK ND +GH GD + Sbjct: 358 DRFRNLSLVDGLTGAGNRRHFDACLARSDRDRPLALLMLDVDMFKLYNDAYGHLAGDSAL 417 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSG 213 IA L + G+ R GGEEF A G S EA + LRK I+N +I + SS Sbjct: 418 IAVARTMLEELRGSVDQAFRYGGEEFCALLPGVSAAEALAVGERLRKRIQNLRIPHQSSS 477 Query: 214 PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258 + H+T+S G+A R P+S + AD+ALY AK SGRN+ VCF Sbjct: 478 VAPHLTVSIGVALREAGSPMSNQELTEYADKALYRAKTSGRNQ-VCF 523 >gi|192360502|ref|YP_001982276.1| abfX GGDEF domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686667|gb|ACE84345.1| abfX GGDEF domain protein [Cellvibrio japonicus Ueda107] Length = 297 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 10/171 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147 + Y +LS +D L+ + N +A +L Y + LS++ D+D+FK+IND FG Sbjct: 125 LHYQGALRLSMLDPLTRIGNRTAMDIALNRELQIAERYRQDLSLLLIDVDHFKRINDQFG 184 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+ ++ + R GGEEF ++ + A I+A +R+ + ++Q Sbjct: 185 HTRGDQVLKEVTGIIQQSSRGSDLTFRYGGEEFVVILGKTNTRGAHIIAERIRERVASTQ 244 Query: 208 INISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +G S T+S GIA R K+ + + RAD+ALY AK+ GRNRV+ Sbjct: 245 LE-HNGHSFQSTVSIGIASHLRDKKDSVQDLFERADKALYCAKRDGRNRVI 294 >gi|218440033|ref|YP_002378362.1| diguanylate cyclase [Cyanothece sp. PCC 7424] gi|218172761|gb|ACK71494.1| diguanylate cyclase [Cyanothece sp. PCC 7424] Length = 389 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y + L+ D L+G LN A I+ ++ +++ DID FK INDN+GH Sbjct: 215 YQDLQTLATCDFLTGTLNRRAMQIEINKEIAYCNRTQKRFAVILMDIDRFKLINDNYGHD 274 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ + + +GR GGEEF + ++ ++A LA LR IEN ++ Sbjct: 275 SGDLVLKHFTMTIKNNIRQEDSLGRWGGEEFLVLSKVNTIEDACTLAERLRNGIENEKV- 333 Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255 I + I TIS G+A H ++ AD ALY AK SGRNRV Sbjct: 334 IINHTIIEYTISLGVAVYAIHGTTQEQLVKSADTALYQAKNSGRNRV 380 >gi|218887438|ref|YP_002436759.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758392|gb|ACL09291.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1000 Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAFI----SSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F +G Y L+++ D+D FK++ND FGH GD V+ Sbjct: 818 DPLTGIRNRRQFFVDAEREMGRAVRYGRPLAVLMLDLDRFKRVNDRFGHHAGDAVLMGCV 877 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +GRLGGEEFAA L + +A A LR+ +E + SG + T Sbjct: 878 QACQQALRETDILGRLGGEEFAAVLLETDLDDALAAAERLRRAVEEMDVPF-SGQRLRCT 936 Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 +S G+A R + + I+ RAD ALY AK++GRNRV+ Sbjct: 937 VSIGLALRGPGDGALDDILRRADSALYAAKEAGRNRVM 974 >gi|194292710|ref|YP_002008617.1| diguanylate cyclase, ggdef domain [Cupriavidus taiwanensis LMG 19424] gi|193226614|emb|CAQ72565.1| putative diguanylate cyclase, GGDEF domain [Cupriavidus taiwanensis LMG 19424] Length = 415 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 20/201 (9%) Query: 70 SLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121 S +++ I+ LLG +++ E +++N +RID L+GLLN A ++ Sbjct: 195 SAWVLAPLIATLLGLFGFTVMAMEQIVAHNESG--ARIDALTGLLNRGALEMSALSLVAR 252 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + LS + DIDYFKQ+ND GH GD V+ ++ L GR GGEEF Sbjct: 253 WQRDGQPLSCLVIDIDYFKQVNDTCGHHAGDAVLREVAQALDNSRRASDVAGRYGGEEFC 312 Query: 182 AAALGSSEQEAAILAND-LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR- 239 + EQ+A+ LAN LRK+ I++ G H ++S G+A+ ++R Sbjct: 313 VLCPATDEQQASALANRVLRKV---HAIDLPGGRG-HASVSIGVAQLRGGPGSREALWRT 368 Query: 240 ----ADQALYVAKKSGRNRVV 256 AD+ALY AK GR+R V Sbjct: 369 LFADADRALYHAKAHGRDRYV 389 >gi|76818246|ref|YP_336235.1| GGDEF domain-containing protein [Burkholderia pseudomallei 1710b] gi|76582719|gb|ABA52193.1| GGDEF domain protein [Burkholderia pseudomallei 1710b] Length = 528 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 19/207 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFIS 120 I + L ++++ I+++ G + + +EL + R+ +L+R D L+GL N AF Sbjct: 320 IRAQRLGVLMLVFGIAIVGG--TALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDE 377 Query: 121 SLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFV 172 +L S LS++F DID FK ND++GH GD V+ + L V V V Sbjct: 378 NLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDV 437 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER----C 228 R GGEEF + + AA +A +R+ + + I P +T+S G+ Sbjct: 438 ARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHIA 497 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRV 255 H + +T++ AD ALY AK +GRNRV Sbjct: 498 HSD--ATLVKMADAALYQAKSTGRNRV 522 >gi|254456807|ref|ZP_05070235.1| signal transduction response regulator-chey like receiver and ggdef domain [Campylobacterales bacterium GD 1] gi|207085599|gb|EDZ62883.1| signal transduction response regulator-chey like receiver and ggdef domain [Campylobacterales bacterium GD 1] Length = 640 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 85/168 (50%), Gaps = 13/168 (7%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 + +L +YNR+ ID L I+S S N+ I+FFDID+FK +ND +GH Sbjct: 482 VRDQLTKAYNRVYFEKTIDSL---------IASNTSQNKNTGIIFFDIDHFKNVNDTYGH 532 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ + D + + + R GGEEF +S E A LRK IE + Sbjct: 533 KAGDDVLRIIVDLVKKNIRSNDKLIRWGGEEFLILLPANSIDEVYKEAEHLRKTIEKHEF 592 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I H+T S G++ I + +AD+ LY AKK+GRNRVV Sbjct: 593 DIVK----HLTCSFGLSLHEATADIHESVKKADEKLYEAKKNGRNRVV 636 >gi|269125579|ref|YP_003298949.1| diguanylate cyclase [Thermomonospora curvata DSM 43183] gi|268310537|gb|ACY96911.1| diguanylate cyclase [Thermomonospora curvata DSM 43183] Length = 437 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 9/175 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 +L + + + ++ +R D +GLLN +A+ G+ NE L+++ DID+FK+ Sbjct: 240 VLLQRSLMHQQLQAAARTDAKTGLLNAAAWQREAGTELARAERTNEPLALLLIDIDHFKR 299 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND GH VGD+V+A ++ L VGR GGEEF G+ EA +A LR Sbjct: 300 VNDTHGHLVGDQVLAGVATTLCGQLRDYDVVGRFGGEEFVVLLPGADIVEACRVAERLRS 359 Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + G ++ +TIS G++ R H + ++ AD ALY AK+SGR+RV Sbjct: 360 RVRRLTVPAEEG-TVGVTISVGVSLLRTHGHDLIELLAAADLALYRAKQSGRDRV 413 >gi|237508061|ref|ZP_04520776.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346] gi|235000266|gb|EEP49690.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346] Length = 487 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+R D L+GL N AF +L S LS++F DID FK ND++GH G Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D V+ + L V V V R GGEEF + + AA +A +R+ + + I Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434 Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255 P +T+S G+ H + +T++ AD ALY AK +GRNRV Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481 >gi|126176093|ref|YP_001052242.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella baltica OS155] gi|125999298|gb|ABN63373.1| diguanylate cyclase [Shewanella baltica OS155] Length = 628 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 11/183 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 L+EL ++++ S ID L+G+ N SAF L ++++ DID FK I Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD+ + ++ L P V R GGEEFA ++E A +A +R Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560 Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + G +I +TIS G++ + + + ++ +AD+ALY AK GRN+V FS Sbjct: 561 AVASLHFEW-EGVAIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLFS 619 Query: 260 DIE 262 ++ Sbjct: 620 SVQ 622 >gi|220918717|ref|YP_002494021.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956571|gb|ACL66955.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] Length = 322 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 ++ +L + R+ + + D L+GL N AF L Y++ +S++ D+D+FK Sbjct: 126 TLQDQLRETQRRLREQTLTDDLTGLKNRRAFDERLQEEFRRAHRYSDPVSLIMIDLDHFK 185 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND +GHP GD V+ S+QL P R GGEEFA + A +A + Sbjct: 186 LVNDRYGHPFGDLVLRGASEQLRASTRDPDICARYGGEEFAVILPKTHLSGALAVAERIW 245 Query: 201 KIIENSQINI---SSGP--SIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGR 252 K + + S+GP SI +T S GIA K+ P + + Y AD+ALY AKK+GR Sbjct: 246 KELSARSYPVPAGSTGPETSIQVTASMGIAFYPSKDIGSPEALVRY-ADEALYQAKKAGR 304 Query: 253 NRVVCF 258 N +C Sbjct: 305 N-TICL 309 >gi|53722992|ref|YP_111977.1| two component system fusin protein [Burkholderia pseudomallei K96243] gi|217422130|ref|ZP_03453633.1| diguanylate cyclase [Burkholderia pseudomallei 576] gi|254263987|ref|ZP_04954852.1| diguanylate cyclase [Burkholderia pseudomallei 1710a] gi|52213406|emb|CAH39449.1| putative two component system fusin protein [Burkholderia pseudomallei K96243] gi|217394361|gb|EEC34380.1| diguanylate cyclase [Burkholderia pseudomallei 576] gi|254214989|gb|EET04374.1| diguanylate cyclase [Burkholderia pseudomallei 1710a] Length = 507 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+R D L+GL N AF +L S LS++F DID FK ND++GH G Sbjct: 335 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 394 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D V+ + L V V V R GGEEF + + AA +A +R+ + + I Sbjct: 395 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 454 Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255 P +T+S G+ H + +T++ AD ALY AK +GRNRV Sbjct: 455 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 501 >gi|53716837|ref|YP_104938.1| GGDEF domain-containing protein [Burkholderia mallei ATCC 23344] gi|121597687|ref|YP_990855.1| diguanylate cyclase [Burkholderia mallei SAVP1] gi|124381348|ref|YP_001025336.1| diguanylate cyclase [Burkholderia mallei NCTC 10229] gi|126447734|ref|YP_001077321.1| diguanylate cyclase [Burkholderia mallei NCTC 10247] gi|238562704|ref|ZP_00440005.2| diguanylate cyclase [Burkholderia mallei GB8 horse 4] gi|254175962|ref|ZP_04882620.1| diguanylate cyclase [Burkholderia mallei ATCC 10399] gi|254202856|ref|ZP_04909218.1| diguanylate cyclase [Burkholderia mallei FMH] gi|254208195|ref|ZP_04914544.1| diguanylate cyclase [Burkholderia mallei JHU] gi|254359492|ref|ZP_04975764.1| diguanylate cyclase [Burkholderia mallei 2002721280] gi|52422807|gb|AAU46377.1| GGDEF domain protein [Burkholderia mallei ATCC 23344] gi|121225485|gb|ABM49016.1| diguanylate cyclase [Burkholderia mallei SAVP1] gi|126240588|gb|ABO03700.1| diguanylate cyclase [Burkholderia mallei NCTC 10247] gi|147745901|gb|EDK52979.1| diguanylate cyclase [Burkholderia mallei FMH] gi|147750882|gb|EDK57950.1| diguanylate cyclase [Burkholderia mallei JHU] gi|148028679|gb|EDK86639.1| diguanylate cyclase [Burkholderia mallei 2002721280] gi|160697004|gb|EDP86974.1| diguanylate cyclase [Burkholderia mallei ATCC 10399] gi|238522109|gb|EEP85555.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4] gi|261826268|gb|ABM98990.2| diguanylate cyclase [Burkholderia mallei NCTC 10229] Length = 487 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+R D L+GL N AF +L S LS++F DID FK ND++GH G Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D V+ + L V V V R GGEEF + + AA +A +R+ + + I Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434 Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255 P +T+S G+ H + +T++ AD ALY AK +GRNRV Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481 >gi|330830578|ref|YP_004393530.1| GGDEF domain-containing protein [Aeromonas veronii B565] gi|328805714|gb|AEB50913.1| GGDEF domain protein [Aeromonas veronii B565] Length = 310 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 4/160 (2%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +S+LS D L+ L N L + E LS+V DID+FKQ+ND +GHP GD + Sbjct: 148 VSRLSCTDPLTELTNRRGAQQQLQALWLQGEPLSVVLGDIDHFKQVNDRYGHPAGDAALC 207 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + + R GGEEF G ++ A LR+ + +++ G + Sbjct: 208 AVAHAMASQLLPGESLARWGGEEFLLILPGCDIEQETRRAEQLRQHVSTTRLPW-QGKQL 266 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +TIS G A +E I ++ AD+ALY AK GRNRVV Sbjct: 267 SLTISLGCASMKGQESIDYLLMMADRALYQAKDQGRNRVV 306 >gi|182420372|ref|ZP_02951594.1| response regulatory protein [Clostridium butyricum 5521] gi|237667618|ref|ZP_04527602.1| response regulatory protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375738|gb|EDT73336.1| response regulatory protein [Clostridium butyricum 5521] gi|237655966|gb|EEP53522.1| response regulatory protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 694 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 10/168 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS--YNE------KLSIVFFDIDYFKQINDNFGH 148 +N + + D L+ N + +S LG Y+E L I D+D FK INDN+GH Sbjct: 526 FNEVKHFAEYDVLTECFNRNKILS-LGKKIYDESKESGYDLCIAMVDVDNFKSINDNYGH 584 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD ++ ++ + G ++GR GGEEF + ++A+ + +LRK IE S+ Sbjct: 585 GAGDHILKSVARIMKKNIGDNDYIGRYGGEEFIIIFNKKNIEQASDICENLRKRIEKSKY 644 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 NI SI+ T+S GI E I AD++LYVAKK+G+N++V Sbjct: 645 NIGD-RSINATVSIGIFEIHDNISFLDGIKYADESLYVAKKTGKNKIV 691 >gi|307822135|ref|ZP_07652367.1| diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307736701|gb|EFO07546.1| diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 394 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 13/174 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G LN + + + L+I+ D+D+FK IND +GHPVGD Sbjct: 220 LQKLALSDALTGALNRRSLEQEAARLSARCTRTGDALAIMMIDVDHFKSINDRYGHPVGD 279 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ L+ + + R GGEEF + E++A LA+ LR+ + I Sbjct: 280 EVLRRLAAVAQKTIRSDDYFARYGGEEFCILLPSTIEKDAWTLADRLRQNYA-ALIMEFG 338 Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV----CFSDI 261 G + TIS G+++ H S+++ ADQA+Y AK+ GRNRVV C S + Sbjct: 339 GDVLRSTISIGVSDSIHAGLEFSSLVAAADQAMYRAKQEGRNRVVMHSFCLSQV 392 >gi|332702057|ref|ZP_08422145.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay] gi|332552206|gb|EGJ49250.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay] Length = 439 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 14/177 (7%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +++ + +R L+ D L+G+ N ++ L + L+ D+D+FK+ Sbjct: 263 LRRQIAQAQDRCELLANTDVLTGVPNRRQLMARLEEELARAMRTGQPLACALMDVDHFKR 322 Query: 142 INDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 +ND GH GD KV+A ++ + V + VGR GGEEF G+ + A LA Sbjct: 323 VNDTHGHQKGDTVLKVLARIARETVRGYDV---VGRFGGEEFLLVLPGTDSEHAMELAER 379 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R + + +S P++ +TIS G+A + + +++ RAD ALY AK+ GRNRV Sbjct: 380 VRLAVHDRLATETSLPNV-VTISLGVATLRPGDNVESLVKRADDALYRAKEKGRNRV 435 >gi|302878235|ref|YP_003846799.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302581024|gb|ADL55035.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 636 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 9/176 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144 EL + +R+ QL+ D L+GL N A + SS+ + + D+D+FK IND Sbjct: 462 ELTAANHRLQQLALTDVLTGLPNRRAAMDRLEQEWSSMRRSQRSFACMVLDVDHFKAIND 521 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GHP GD ++ ++ L FV R GGEEF + A A LR + Sbjct: 522 KYGHPAGDAALSGIAQALRAAARAQDFVCRFGGEEFLVICPDTDVDAAFQCAERLRLQVA 581 Query: 205 NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ + +TIS GIA + + + ++ AD+ LY AK++GRNR VC Sbjct: 582 TMKV-AGVAAELRLTISIGIAVSKPEMDKVEALLVGADKCLYAAKQAGRNRTVCLK 636 >gi|225849586|ref|YP_002729820.1| diguanylate cyclase [Persephonella marina EX-H1] gi|225645477|gb|ACO03663.1| diguanylate cyclase [Persephonella marina EX-H1] Length = 338 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 9/154 (5%) Query: 107 DCLSGLLNHSAFIS---SLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ +LN +FI+ S+ + N+ S++ DID FK+IND +GH VGDKV+ + D Sbjct: 184 DPLTKVLNRRSFIAIYNSIINRNDIFPASLMIMDIDDFKKINDTYGHNVGDKVLKKIVDV 243 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + R GGEEF + +A ++A +R++IEN I + ++T+S Sbjct: 244 IKSNIRKKDLFVRWGGEEFIIFFPETDIDQARVVAEKIRRLIEN----IKFEENFNVTVS 299 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 GI E E + +I RAD+ALY AKK+ +NRV Sbjct: 300 IGITELKKGEFLVEVIKRADRALYRAKKNNKNRV 333 >gi|160897442|ref|YP_001563024.1| diguanylate cyclase [Delftia acidovorans SPH-1] gi|160363026|gb|ABX34639.1| diguanylate cyclase [Delftia acidovorans SPH-1] Length = 612 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N A + L S +L++ F D+D FKQ+ND GH GD+V+ ++ Sbjct: 453 DVLTGLANRRALQARLQRALAQASGPGQLAVCFMDLDGFKQVNDTEGHDAGDEVLRIIAR 512 Query: 161 QLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +L V RLGG+EF L S++ I+ L I I + SG ++ + Sbjct: 513 RLTTQARETDCVARLGGDEFVLLLDELASADDALQIMQRCLASI--RQPIRLHSGATVQV 570 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S GIA +E + ++ RAD+A+Y AK++G+ R+V Sbjct: 571 GASMGIALNASREDATQLLQRADEAMYAAKRAGKGRIV 608 >gi|53805012|ref|YP_113338.1| GGDEF domain-containing protein [Methylococcus capsulatus str. Bath] gi|53758773|gb|AAU93064.1| GGDEF domain protein [Methylococcus capsulatus str. Bath] Length = 391 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 10/169 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 Y+R+ L+ +D L+G N ++ L N L I+ FDIDYFK+IND +GH Sbjct: 222 YDRLQTLAALDPLTGAYNRRFGMARLREEFRRAVRLNLPLGILMFDIDYFKRINDTYGHL 281 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V++ ++ V + R GGEEF A +S + + LR +++ + Sbjct: 282 AGDRVLSRVAKTARSVLREGDVLIRYGGEEFIAVLPAASLHDLEYVGERLRHQVDDLML- 340 Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + S+H+T+S G A E + ++ RAD+ALY AK GRNR+V Sbjct: 341 MDGDQSMHVTVSIGAAAYPDTDVEDETALVDRADKALYAAKSDGRNRLV 389 >gi|170756330|ref|YP_001779985.1| GGDEF/HD domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169121542|gb|ACA45378.1| GGDEF/HD domain protein [Clostridium botulinum B1 str. Okra] Length = 567 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 9/172 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L D L+ + NH F +L NE LS++F DIDYFK ND +GH G Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 248 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210 D+V+ + + L V R GGEEFA +SEQ+A +A +RK IE + Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKIECTYFEGE 308 Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261 + P+ ++T+S GI+ +K +I AD ALY AK +NRV ++ I Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360 >gi|167724922|ref|ZP_02408158.1| two component system fusin protein [Burkholderia pseudomallei DM98] Length = 487 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+R D L+GL N AF +L S LS++F DID FK ND++GH G Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D V+ + L V V V R GGEEF + + AA +A +R+ + + I Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434 Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255 P +T+S G+ H + +T++ AD ALY AK +GRNRV Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481 >gi|126733986|ref|ZP_01749733.1| hypothetical protein RCCS2_07504 [Roseobacter sp. CCS2] gi|126716852|gb|EBA13716.1| hypothetical protein RCCS2_07504 [Roseobacter sp. CCS2] Length = 252 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 17/208 (8%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115 +P Y + + V L+ +T+SL + R+ QLSR D L+GL N Sbjct: 48 SPLYHIGHATVVGGPLIAFFLTVSLFQIRLQ-----------RRLWQLSRKDALTGLNNR 96 Query: 116 SAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 F +S + N + +V D D FK IND GH GD+ + +S L + Sbjct: 97 RTFFELVSKARAINHRGVLVMMDADRFKAINDTHGHLAGDRCLKSISYTLQRNVRRDDVL 156 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232 R+GGEEFA G++ Q A ++ + K I + + + +T+S G A+ Sbjct: 157 ARIGGEEFALYLTGATPQTARVIGERITKPIT---FDTDTVKGLSVTLSLGAAQALPDLS 213 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260 I + RAD ALY AK+ GR R + + D Sbjct: 214 IDAVFARADAALYQAKQDGRARYLQWED 241 >gi|126457290|ref|YP_001076708.1| diguanylate cyclase [Burkholderia pseudomallei 1106a] gi|167850887|ref|ZP_02476395.1| two component system fusin protein [Burkholderia pseudomallei B7210] gi|242313189|ref|ZP_04812206.1| diguanylate cyclase [Burkholderia pseudomallei 1106b] gi|126231058|gb|ABN94471.1| diguanylate cyclase [Burkholderia pseudomallei 1106a] gi|242136428|gb|EES22831.1| diguanylate cyclase [Burkholderia pseudomallei 1106b] Length = 487 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+R D L+GL N AF +L S LS++F DID FK ND++GH G Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D V+ + L V V V R GGEEF + + AA +A +R+ + + I Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434 Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255 P +T+S G+ H + +T++ AD ALY AK +GRNRV Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481 >gi|226942206|ref|YP_002797279.1| hypothetical protein Avin_00370 [Azotobacter vinelandii DJ] gi|226717133|gb|ACO76304.1| transmembrane protein with C-terminal GGDEF motif [Azotobacter vinelandii DJ] Length = 529 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 8/169 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 R++Q + L+GL+N +L + E+ +++ DID+FKQ+NDN GH VGD+V Sbjct: 356 GRLNQENITAPLTGLVNRRGQQFALERWQEQQQPFAVIVLDIDHFKQVNDNHGHDVGDQV 415 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +S + V + V R GGEEF + + A +A LR +I ++Q S Sbjct: 416 LQHVSHLMDSVSRSSDLVCRSGGEEFVLLLPETGLEAATQVAERLRGLISHTQTPTGS-- 473 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +TIS G+A + ++ AD+ALY AK++GRNRVV E Sbjct: 474 --FVTISTGVAHWPGSASSVPAVLKLADEALYRAKRNGRNRVVVAGQRE 520 >gi|212636619|ref|YP_002313144.1| cyclic nucleotide phosphodiesterase [Shewanella piezotolerans WP3] gi|212558103|gb|ACJ30557.1| Cyclic nucleotide phosphodiesterase, putative [Shewanella piezotolerans WP3] Length = 641 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 12/170 (7%) Query: 98 NR-ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 NR +S L+ D L+ L N AF + ++N +LS++ FD D+FK+IND FGH Sbjct: 471 NRMLSILAMTDHLTQLPNRRQIYLKAQAFFNHARNHNSELSVISFDADHFKRINDTFGHE 530 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L+ + P VGR GGEEF ++ A +A L ++++ + Sbjct: 531 TGDVALQTLAISAQELMRKPQIVGRTGGEEFLILLPDTNLTAAMRIATQLINNVKDA--D 588 Query: 210 ISSGPS-IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + P+ +TISAG+A + ++T+I RAD ALY AK +GRN+ VC Sbjct: 589 YRALPTGFTLTISAGVATLQASDLQLATLINRADDALYSAKNAGRNQAVC 638 >gi|206562608|ref|YP_002233371.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] gi|198038648|emb|CAR54608.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] Length = 510 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 9/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 LK + +++ +L+ D L+GL N F + L ++ LS++F D+D+FK Sbjct: 326 LKRRQDAESKLYRLAHTDSLTGLDNRGTFDAVLAKEAQRASRSGRPLSVLFVDVDHFKAF 385 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GHP GD V+ ++ L V R GGEEF + AA +A +R+ Sbjct: 386 NDYYGHPAGDDVLRQVAQSLSRCLRRDSDHVARYGGEEFVVTLPDTDAPGAATVAEGIRR 445 Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256 I I P +T S G A + +T++ RAD+ALY AK GRNRV+ Sbjct: 446 AIAGLGIEHVKSPYGRVTASIGTATAADGRMNAATLLRRADEALYRAKSGGRNRVL 501 >gi|163800944|ref|ZP_02194844.1| hypothetical protein 1103602000593_AND4_01738 [Vibrio sp. AND4] gi|159175293|gb|EDP60090.1| hypothetical protein AND4_01738 [Vibrio sp. AND4] Length = 320 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152 +S++SR D L+GL N + + SL +L S+V FDID+FK++ND +GH GD Sbjct: 152 LSEISRKDGLTGLFNRAYWEQSLKEEFAELKVTEGASSLVIFDIDHFKKVNDTYGHHSGD 211 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI S L + GR GGEEF +++++A A LRK IE + + Sbjct: 212 EVIRRTSSILSKTARSNDVCGRFGGEEFTVLLPDTNQEQAIYFAERLRKRIEQEIVKVEE 271 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ TIS G+ + + E + + AD ALY AK++GRN+ Sbjct: 272 FL-INYTISVGVCVYKSYFESHTQWLKNADLALYRAKENGRNQT 314 >gi|126443111|ref|YP_001063817.1| GGDEF domain-containing protein [Burkholderia pseudomallei 668] gi|126222602|gb|ABN86107.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia pseudomallei 668] Length = 487 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+R D L+GL N AF +L S LS++F DID FK ND++GH G Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D V+ + L V V V R GGEEF + + AA +A +R+ + + I Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434 Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255 P +T+S G+ H + +T++ AD ALY AK +GRNRV Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481 >gi|322509775|gb|ADX05229.1| Putative membrane protein with GGDEF domain [Acinetobacter baumannii 1656-2] Length = 255 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 3/165 (1%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 I +LS+ID L+ +LN + + L + +E+ +++ DID+FK+IND +GH GD+V+ Sbjct: 85 IQRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLI 144 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L +GR GGEEF + +A +A R+ ++ I + I Sbjct: 145 EIAQCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQI 204 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 H++ S GI+ +I +ADQALY K SGRN+V F + Sbjct: 205 HVSASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQL 249 >gi|167907804|ref|ZP_02495009.1| two component system fusin protein [Burkholderia pseudomallei NCTC 13177] Length = 487 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+R D L+GL N AF +L S LS++F DID FK ND++GH G Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D V+ + L V V V R GGEEF + + AA +A +R+ + + I Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434 Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255 P +T+S G+ H + +T++ AD ALY AK +GRNRV Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481 >gi|55981610|ref|YP_144907.1| GGDEF domain-containing protein [Thermus thermophilus HB8] gi|55773023|dbj|BAD71464.1| GGDEF domain protein [Thermus thermophilus HB8] Length = 360 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 80/156 (51%), Gaps = 11/156 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L Y LS+V D+D FK +ND GH VGD+V+ L+ Sbjct: 204 DFLTGLRNRRYLELILERELFRLQRYGRPLSLVLLDLDGFKAVNDLHGHEVGDRVLQALA 263 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ RLGGEEFA + +A LA LR+ +E ++ P IT Sbjct: 264 QRIEAHLRRSDRAVRLGGEEFALLLPETPLPQALRLAERLRRAVE----AMAVPPVARIT 319 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+AE + T++ RAD+A+Y AK+ G+NRV Sbjct: 320 ASFGVAEARPTDTPLTLLRRADEAMYRAKRKGKNRV 355 >gi|205372227|ref|ZP_03225042.1| YhcK [Bacillus coahuilensis m4-4] Length = 212 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 106/193 (54%), Gaps = 14/193 (7%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSY 125 +I +TI +L ++S + +K L + R S D L+GL N + I+ + + Sbjct: 9 MIFLTIGYILFFVSETHIKTL-VDLERKEAESVTDHLTGLQNRRSLDRMIYQIIADIQNG 67 Query: 126 NEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV---VVFGTPMFVGRLGGEEFA 181 +E + S++ FD+DYFKQ ND +GH GD+++ +S +LV + + + R GGEEF Sbjct: 68 DETMYSVILFDVDYFKQFNDTYGHISGDEILWQMS-RLVENHLEDQEHITLYRYGGEEFC 126 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRA 240 +EA +A +R+++E + I + IH+TIS G+A + +S ++ A Sbjct: 127 IVMKSVPHKEAKRVAEKIRELVETANFYIPAKKEIHLTISLGVASYPETTDELSDVLSCA 186 Query: 241 DQALYVAKKSGRN 253 D+ LY AK++GRN Sbjct: 187 DKFLYRAKRNGRN 199 >gi|169794339|ref|YP_001712132.1| GGDEF domain-containing protein [Acinetobacter baumannii AYE] gi|213159087|ref|YP_002321084.1| GGDEF family protein [Acinetobacter baumannii AB0057] gi|332850144|ref|ZP_08432531.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013150] gi|332868980|ref|ZP_08438539.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013113] gi|169147266|emb|CAM85125.1| putative membrane protein with GGDEF domain [Acinetobacter baumannii AYE] gi|213058247|gb|ACJ43149.1| GGDEF family protein [Acinetobacter baumannii AB0057] gi|332730993|gb|EGJ62299.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013150] gi|332733023|gb|EGJ64225.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013113] Length = 397 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 26/277 (9%) Query: 13 LCHEKNL-ESFSPHTFMIYF------------SIFFSIFI-ATVIFIANIFLFYIGL--- 55 LCH+ L S SP T + Y I +S FI AT+I +L G+ Sbjct: 117 LCHDGYLIGSISPATMVGYVGTIGVGLVLFERKIVYSAFIPATIILAVCTYLSMTGVISY 176 Query: 56 TPFYGLEYIL-VENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCL 109 P + + + + + S+ ++ ++ IL E+ ++ R I +LS+ID L Sbjct: 177 APLFNFKTMRHAQTNPFWLGSMLFFIMPILVACFILFEILLTQWRQRETYIQRLSQIDPL 236 Query: 110 SGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 + +LN + + L + +E+ +++ DID+FK+IND +GH GD+V+ ++ L Sbjct: 237 TNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLIEIARCLSENL 296 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 +GR GGEEF + +A +A R+ ++ I + IH++ S GI+ Sbjct: 297 RNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQIHVSASFGISS 356 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +I +ADQALY K SGRN+V F + Sbjct: 357 SAFANDPYLVIRQADQALYAVKASGRNQVRTFHQLPQ 393 >gi|167743862|ref|ZP_02416636.1| two component system fusin protein [Burkholderia pseudomallei 14] gi|167821049|ref|ZP_02452729.1| two component system fusin protein [Burkholderia pseudomallei 91] gi|167829413|ref|ZP_02460884.1| two component system fusin protein [Burkholderia pseudomallei 9] gi|167899491|ref|ZP_02486892.1| two component system fusin protein [Burkholderia pseudomallei 7894] gi|167916166|ref|ZP_02503257.1| two component system fusin protein [Burkholderia pseudomallei 112] gi|167924002|ref|ZP_02511093.1| two component system fusin protein [Burkholderia pseudomallei BCC215] gi|226197006|ref|ZP_03792584.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9] gi|254184667|ref|ZP_04891256.1| diguanylate cyclase [Burkholderia pseudomallei 1655] gi|254185886|ref|ZP_04892404.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237] gi|254194156|ref|ZP_04900588.1| diguanylate cyclase [Burkholderia pseudomallei S13] gi|254300943|ref|ZP_04968387.1| diguanylate cyclase [Burkholderia pseudomallei 406e] gi|157811534|gb|EDO88704.1| diguanylate cyclase [Burkholderia pseudomallei 406e] gi|157933572|gb|EDO89242.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237] gi|169650907|gb|EDS83600.1| diguanylate cyclase [Burkholderia pseudomallei S13] gi|184215259|gb|EDU12240.1| diguanylate cyclase [Burkholderia pseudomallei 1655] gi|225930989|gb|EEH26998.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9] Length = 487 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+R D L+GL N AF +L S LS++F DID FK ND++GH G Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAG 374 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D V+ + L V V V R GGEEF + + AA +A +R+ + + I Sbjct: 375 DDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEH 434 Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255 P +T+S G+ H + +T++ AD ALY AK +GRNRV Sbjct: 435 VRSPYARVTVSIGLVTSHEHIAHSD--ATLVKMADAALYQAKSTGRNRV 481 >gi|296285042|ref|ZP_06863040.1| diguanylate cyclase [Citromicrobium bathyomarinum JL354] Length = 394 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 90/179 (50%), Gaps = 11/179 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 EL + + QL+ D L+GLLN A F LG + + ++ DID FK IND GH Sbjct: 203 ELLMLERKSQQLALTDPLTGLLNRRALLDFAEGLGEQSGQSRLLLIDIDCFKVINDTHGH 262 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD V+ ++ + G + RLGGEEF A LG+SE A L I +++ Sbjct: 263 DVGDTVLQEVARLIQAHAGDGVSAARLGGEEF--ALLGTSEALPPGKAMQLLAEIREAEM 320 Query: 209 NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 TIS G+AE + + + +RAD+ALY AK GR+R V ++E T Sbjct: 321 PHGG----QCTISIGVAEGALSDDSTWRELYHRADKALYAAKSQGRDRTVHEHELETLT 375 >gi|326795951|ref|YP_004313771.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326546715|gb|ADZ91935.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 361 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 12/167 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R Q + D L+ + N + L N+ + + D+D+FK++ND FGH +GD+V+ Sbjct: 195 KRSKQEADRDFLTDINNRRGLQNKLRELQPNDDICVFLIDVDHFKRVNDTFGHDIGDRVL 254 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ +L V+ F+ R GGEEF + ++ ++ I E Q +S P Sbjct: 255 IEIASRLRTVYPERHFLTRWGGEEFMITLINPK-------SDRIQTIAERFQTILSHSPY 307 Query: 216 IH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 H +T+S G++ + + TI+ +AD A+Y AK +GRN+V FS Sbjct: 308 QHVGTVTVSLGVSSLSNHKDFETIVQQADNAMYEAKHNGRNQVALFS 354 >gi|307941681|ref|ZP_07657036.1| ggdef domain-containing protein [Roseibium sp. TrichSKD4] gi|307775289|gb|EFO34495.1| ggdef domain-containing protein [Roseibium sp. TrichSKD4] Length = 405 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 12/167 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 + +L+++D L+ L N AF++ + ++ S++ D+D+FK++ND GH +G Sbjct: 212 KFQELAQVDPLTNLNNRRAFLNEANDWLKRNSRKERDFSVIMLDLDHFKKVNDTHGHAIG 271 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINI 210 DKV+ +D L +GRLGGEEFA + A +R K IE + Sbjct: 272 DKVLKISADVLKTELPNDAAIGRLGGEEFAILLKNTPHDRVMYYAERVRCKFIEAVCSDF 331 Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255 + ++ +T+SAG + P++T + AD+ALY AK +GRNRV Sbjct: 332 NG--ALSVTLSAGYHTENTRSNCPLNTAMAFADRALYQAKDAGRNRV 376 >gi|218549953|ref|YP_002383744.1| diguanylate cyclase AdrA [Escherichia fergusonii ATCC 35469] gi|218357494|emb|CAQ90133.2| putative diguanylate cyclase [Escherichia fergusonii ATCC 35469] Length = 399 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 23/201 (11%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122 LSL +I + L+ ++S +L R+ +S D ++G+ N + + L Sbjct: 204 LSLPVI-VLYPLIFAWVSYQTATKLAEHKRRLQVMSARDGMTGVYNRRHWETLLCIEFDH 262 Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 Y +++ DID+FK IND +GH VGD+ I L+ QL + + +GR GG+EFA Sbjct: 263 CRRYQRDATLLIIDIDHFKSINDTWGHDVGDEAILALTRQLQMTLRSSDVIGRFGGDEFA 322 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII--YR 239 G+ + A + + + + S + +S P + + IS G+A P++ I YR Sbjct: 323 VIMCGTPAENAIAAMSRVHERL--SHLRLSCAPQVILRISVGVA------PLTPQISHYR 374 Query: 240 -----ADQALYVAKKSGRNRV 255 AD ALY AK +GRNR Sbjct: 375 EWLKSADMALYKAKSAGRNRT 395 >gi|78063244|ref|YP_373152.1| diguanylate cyclase [Burkholderia sp. 383] gi|77971129|gb|ABB12508.1| diguanylate cyclase [Burkholderia sp. 383] Length = 510 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 9/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 LK ++ +++ +L+ D L+G+ N F + L ++ LS++F D+D+FK Sbjct: 326 LKRRQVAESKLYRLAHTDALTGVDNRGTFDTVLAKEAQRASRSGRPLSVLFVDVDHFKAF 385 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GHP GD V+ ++ V R GGEEF + Q A +A +R+ Sbjct: 386 NDYYGHPAGDDVLRRVAQTASRCLRRDSDHVARYGGEEFVVTLPDTDAQGALTVAEGIRR 445 Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256 I I + P +T S G A + +T++ RAD+ALY AK GRNRV+ Sbjct: 446 AIAALGIEHAKSPYGRVTASIGAATSTDGRVNAATLLRRADEALYRAKSGGRNRVL 501 >gi|320158647|ref|YP_004191025.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O] gi|319933959|gb|ADV88822.1| GGDEF domain protein [Vibrio vulnificus MO6-24/O] Length = 414 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 24/178 (13%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +L+ ID L+ L + A + + SI D+D+FK+ ND +GH GD V+ + + Sbjct: 236 ELAFIDVLTQLPSRRALEMDVKHLGRRFSIAMIDVDHFKKFNDTYGHDTGDDVLKLVGSR 295 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS--- 215 L+++ G V R GGEEF G + +E +D+R+ I N + N ++ PS Sbjct: 296 LLLIKGGAK-VYRYGGEEFTVVFKGKTSKEVQGYLDDIREDIANYDLVLRNDTTRPSKAS 354 Query: 216 ---------------IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +++T+S G+++ R K+P TI AD+ALY AKK+GRN+V+ Sbjct: 355 EGKKRRGTQENTMNTVNVTVSIGVSDSRSSKDP-DTIRSLADEALYKAKKAGRNQVMT 411 >gi|283834350|ref|ZP_06354091.1| diguanylate cyclase YddV [Citrobacter youngae ATCC 29220] gi|291069884|gb|EFE07993.1| diguanylate cyclase YddV [Citrobacter youngae ATCC 29220] Length = 462 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 9/169 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK-LSIVFFDIDYFKQINDNFGHPVG 151 + Q + D L+ LLN FI SL + K ++ DIDYFKQIND++GH G Sbjct: 295 VKQENGKDSLTQLLNRR-FIPTIMRREISLALHTRKPFTLAMLDIDYFKQINDSYGHNTG 353 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + ++ + + +V R GGEEF + S +A+I+ LR I + ++ S Sbjct: 354 DMTLKNVAAVIYDHIRSSDYVFRYGGEEFMILLVESDRSQASIILETLRMKIADLRMAAS 413 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + +T+S GIAE + ++ +AD+ALY+AK +GR+RV F + Sbjct: 414 ATEAFSVTVSIGIAEYDYHPDYKQLVDKADRALYLAKSNGRDRVEIFQE 462 >gi|229147958|ref|ZP_04276299.1| GGDEF domain protein [Bacillus cereus BDRD-ST24] gi|296505836|ref|YP_003667536.1| GGDEF family protein [Bacillus thuringiensis BMB171] gi|228635608|gb|EEK92097.1| GGDEF domain protein [Bacillus cereus BDRD-ST24] gi|296326888|gb|ADH09816.1| GGDEF family protein [Bacillus thuringiensis BMB171] Length = 352 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 26/208 (12%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRI----------SQLSRIDCLSGLLN 114 L++ + +V + + S++ GYI+ FIS N + Q + ID L+GL N Sbjct: 150 LIKEIHIVGLYLISSIITGYIT-------FISANYVLQSNELFQTMKQYATIDALTGLGN 202 Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 F IS+ N+ L ++ DID+FK +ND +GHP GD+V+ + L + Sbjct: 203 VRQFDLEMNRHISNKHLKNDSLCLLLIDIDHFKHVNDTYGHPAGDEVLKQVGHILREMSA 262 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 P V R GGEEFA + R +E + G I IT+S G++E Sbjct: 263 FPDLVFRKGGEEFALLIPRKEMAYGIHVGEQTRIAVEKHSFELLDGTKIKITVSVGVSE- 321 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ I AD ALY +K++GRN+V Sbjct: 322 -YEGASEQFIQAADDALYYSKRNGRNKV 348 >gi|227327985|ref|ZP_03832009.1| hypothetical protein PcarcW_11895 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 167 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 10/159 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++R D L+G L AF + +S++ DIDYFKQ+ND+FGH VGD + Sbjct: 7 IARYDDLTGYLRRDAFFLAANKAFSIANLTKRPVSVILIDIDYFKQVNDSFGHSVGDDAL 66 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 F++D F GR+GG+EFA + +A + + R+ + N+ ++G Sbjct: 67 KFVADTFRKSFRREDIFGRIGGDEFAIVLPNTGLDDAYTIVDKARERVSNTPCETAAG-K 125 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 I +T+S G+ E E + ++ RAD LY+AKK+ RN Sbjct: 126 IRLTVSIGLVEYHITGEDLIEVMKRADDNLYIAKKT-RN 163 >gi|56459965|ref|YP_155246.1| signal protein [Idiomarina loihiensis L2TR] gi|56178975|gb|AAV81697.1| Signaling protein with a sensor domain and GGDEF domain [Idiomarina loihiensis L2TR] Length = 507 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 22/165 (13%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N SAF L + LSI D+D+FK IND+FGH GDK + ++ Sbjct: 349 DNLTKLPNRSAFDERLNLEFQRWVNDETPLSIAIIDVDHFKNINDSFGHIAGDKTLQVIA 408 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP----- 214 L FV R GGEEF A + S+ ++A + IEN++ +++ P Sbjct: 409 GTLSKSLRESAFVCRYGGEEF--AIIFCSDGQSAY------QHIENTREKVANIPFKFKT 460 Query: 215 -SIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVC 257 I ITISAGIAE + E ++ RAD+ALY AK SGRN+V+ Sbjct: 461 DDIRITISAGIAEFKYNEDTPLAVFERADKALYEAKNSGRNKVIT 505 >gi|307720225|ref|YP_003891365.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306978318|gb|ADN08353.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 369 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 29/245 (11%) Query: 33 IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK- 91 ++FS+ ++F+ L Y + + +++ + + LV+ S ++L + YI ++L Sbjct: 123 LYFSLLFYAILFV----LSYHYINVWDSGQWLFTDWMRLVLASTVLTLCM-YIYEALLDK 177 Query: 92 -ELFISYNRISQLSRI---------DCLSGLLNHSAF------ISSLGSYNEKLSIVFF- 134 + + R +L R D L+GL N + +++L + L I FF Sbjct: 178 AQQDLQRARAKELQRTKELHLQSITDQLTGLYNRRYYDNMIVKLAALAK-RQNLCITFFI 236 Query: 135 -DIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DIDYFK NDN+GH GD+ + ++ L + FV RLGGEEFA L +Q+A Sbjct: 237 LDIDYFKLYNDNYGHIQGDEALIEVAQVLKKHIQRGDDFVFRLGGEEFAGIILSKEKQKA 296 Query: 193 AILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKK 249 A+ L KIIE+ +I + +S S +T+S GIA H + I + AD+ALY AK Sbjct: 297 QQWASQLTKIIEDLKIEHRTSKISEFLTVSIGIATLSHPQENNIGLLYKDADKALYTAKY 356 Query: 250 SGRNR 254 +GRN+ Sbjct: 357 NGRNQ 361 >gi|254458357|ref|ZP_05071782.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207084665|gb|EDZ61952.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 422 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 11/154 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F + YN LS+ DID FK ND +GH +GD+V+ LS Sbjct: 267 DSLTGINNREKFEEVIYYELKQSKRYNRSLSLAILDIDKFKDFNDTYGHLIGDEVLIMLS 326 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +++ R GGEEF ++ Q A LA + R+IIE + + S+G +T Sbjct: 327 EEIQKHTRESDLFARWGGEEFVLLFSNTNLQNAMNLAENFRQIIEKLK-HKSAGS---VT 382 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +S G+ E + + ++ RAD ALY AK SGRN Sbjct: 383 VSFGLTEYKKGDTLKSMFKRADDALYEAKNSGRN 416 >gi|157374293|ref|YP_001472893.1| sensory box protein [Shewanella sediminis HAW-EB3] gi|157316667|gb|ABV35765.1| sensory box protein [Shewanella sediminis HAW-EB3] Length = 340 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 11/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 +EL ++ LS ID L+ + N +F L YN LS+ FDID FK +N Sbjct: 170 QELEEKIKEVALLSNIDPLTSIANRRSFEKELQKEVLRSRRYNHPLSLTIFDIDLFKNVN 229 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD ++ L + F R GGEEF + ++A ++ LR I Sbjct: 230 DTYGHKKGDDILQKLCKLVSTNIRELDFFARWGGEEFVLIFPELTLKQALVVTEKLRTTI 289 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +I P ++IT S G+ E ++ I I R D +LY AK +GRNR+ Sbjct: 290 SQYEIE----PDLYITCSFGVTECKDEDSIEDIFQRIDNSLYQAKSNGRNRI 337 >gi|24375692|ref|NP_719735.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1] gi|24350618|gb|AAN57179.1|AE015852_9 GGDEF domain protein [Shewanella oneidensis MR-1] Length = 625 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 13/185 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142 L+EL ++++ S ID L+G+ N SAF L + + ++++ DID FK I Sbjct: 440 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSI 499 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD+ + ++ L P V R GGEEFA ++ A +A +R Sbjct: 500 NDQFGHLAGDQALKLIAQTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAESIRD 559 Query: 202 IIENSQINIS-SGPSIHITISAGI-AERCHKEPIST-IIYRADQALYVAKKSGRNRVVCF 258 + S I ++ G I +T+S G+ A+ E ST ++ +AD+ALY AK SGRN+V + Sbjct: 560 TV--SCIGLTWEGKPIPLTVSIGVSADVIMNEQHSTELLEQADKALYQAKNSGRNQVKLY 617 Query: 259 SDIEN 263 + + Sbjct: 618 APAQT 622 >gi|325498328|gb|EGC96187.1| diguanylate cyclase AdrA [Escherichia fergusonii ECD227] Length = 366 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 25/201 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122 LSL +I + L+ ++S +L R+ +S D ++G+ N + + L Sbjct: 171 LSLPVI-VLYPLIFAWVSYQTATKLAEHKRRLQVMSARDGMTGVYNRRHWETLLCIEFDH 229 Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 Y +++ DID+FK IND +GH VGD+ I L+ QL + + +GR GG+EFA Sbjct: 230 CRRYQRDATLLIIDIDHFKSINDTWGHDVGDEAILALTRQLQMTLRSSDVIGRFGGDEFA 289 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E AI A + ++ E S + +S P + + IS G+A P++ I Y Sbjct: 290 VIMCGTPA-ENAIAA--MSRVHERLSHLRLSCAPQVILRISVGVA------PLTPQISHY 340 Query: 239 R-----ADQALYVAKKSGRNR 254 R AD ALY AK +GRNR Sbjct: 341 REWLKSADMALYKAKSAGRNR 361 >gi|187920507|ref|YP_001889539.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] gi|187718945|gb|ACD20168.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] Length = 381 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 12/169 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 R+ +L+ +D L+G L+ AF++ SL + +++ DID FK +NDN+GH Sbjct: 215 ERLERLANVDDLTGALSRRAFLAIGDALLKASLRT-RSPVALAIIDIDSFKAVNDNYGHA 273 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V++ + + GRLGGEEF ++ EA L + LR + + + Sbjct: 274 AGDQVLSHFATFVARNLRVGDVFGRLGGEEFGVLCPATTTAEAVSLLDRLRGRLAGAAAD 333 Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + G + T S G+ + E ++ ++ RAD ALY AK SGRNRV+ Sbjct: 334 ELPRG--LRYTFSVGVDQLRRDESLAQLMARADGALYAAKASGRNRVMA 380 >gi|163783339|ref|ZP_02178332.1| hypothetical protein HG1285_13857 [Hydrogenivirga sp. 128-5-R1-1] gi|159881447|gb|EDP74958.1| hypothetical protein HG1285_13857 [Hydrogenivirga sp. 128-5-R1-1] Length = 540 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 87/158 (55%), Gaps = 11/158 (6%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G+ N AF I + ++ +S++ D+D FK++ND+ GH VGD+V+A L Sbjct: 382 MDSLTGVFNRRAFDEFGRELIERFLTLSKPISVLMIDVDDFKRVNDSHGHQVGDQVLAEL 441 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + V R GGEEF A G+S + A + +R+ +E + G I Sbjct: 442 GRLIRETLRETDIVFRYGGEEFLALLPGTSLEGALRAGDKVRRRVEAH--SFPPGDQ-RI 498 Query: 219 TISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+A+ E ++ RAD+ALY+AKK+G+NRV Sbjct: 499 TVSVGVAQGTEGDERAEDVVSRADRALYIAKKTGKNRV 536 >gi|262191053|ref|ZP_06049261.1| amino acid ABC transporter amino acid-binding protein [Vibrio cholerae CT 5369-93] gi|262033074|gb|EEY51604.1| amino acid ABC transporter amino acid-binding protein [Vibrio cholerae CT 5369-93] Length = 461 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND+FG Sbjct: 289 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQARSGSLTLMVFDIDDFKTINDHFG 348 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 349 HGAGDNAICFVVGCVRQALESDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 408 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A H P S ++ AD +Y K++G+N+VV Sbjct: 409 WVVNAQHSLSLTISLGCAFYLHPARPFS--LHDADSLMYEGKRNGKNQVV 456 >gi|260462172|ref|ZP_05810416.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] gi|259032032|gb|EEW33299.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] Length = 263 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F +L Y E+ + ++ D+D+FKQ+ND GH VGD+V+ ++ Sbjct: 107 DSLTGMQNRRYFDDALKEYLEEFRRIEKPVGLMILDLDHFKQVNDTHGHDVGDEVLRAVA 166 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + V RLGGEEFA + A +RK I N + ++ + IT Sbjct: 167 SCLKDMTRYHDVVARLGGEEFAVVTPNMDAELLGKFAERIRKAIANMSV-LTGNVRLKIT 225 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A +E RAD+ LY AK+ GRNRV Sbjct: 226 TSVGLAVWDRQETAEDFYRRADRQLYEAKRQGRNRV 261 >gi|319780749|ref|YP_004140225.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166637|gb|ADV10175.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 398 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D LSGLLN F + S +++V D+D+FK +ND GH GD+VIA + Sbjct: 225 DPLSGLLNRRGFEERGMLLLRHCASARFPVALVLADLDHFKALNDVHGHGAGDRVIADFA 284 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218 +L G GR+GGEEFA S A + A +R + ++ + G + Sbjct: 285 AKLRSAAGARGVAGRIGGEEFAVLLPLSDLAAARLFAEAVRTVYSAGHVDGLPQG--TKV 342 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T S G+A R E + ++ RAD ALY AKK+GR+ V Sbjct: 343 TASFGVAARSGDEALEPLMRRADDALYKAKKNGRDSV 379 >gi|307726295|ref|YP_003909508.1| diguanylate cyclase [Burkholderia sp. CCGE1003] gi|307586820|gb|ADN60217.1| diguanylate cyclase [Burkholderia sp. CCGE1003] Length = 368 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 89/175 (50%), Gaps = 21/175 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QL D L+GL N F L Y L+ +F D+D FK+IND +GH Sbjct: 188 ERLKQLGMTDPLTGLSNRRYFDERLREELVRAARYGVPLACLFIDVDSFKRINDTYGHQT 247 Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD+ +A ++ Q V + T V R GGEEFAA G +A +A +R +E Q Sbjct: 248 GDRALAAVAACVRQQVRLGDT---VARYGGEEFAALVQG-DRADAQTVAERVRVAVEKLQ 303 Query: 208 INISSGPSIHITISAGIAERC----HKEPIS---TIIYRADQALYVAKKSGRNRV 255 + G I +T+S G+A R E ++ ++ AD+A+Y AK +GRNRV Sbjct: 304 LLDDDGERIALTVSIGVAARTVSGSPAEAVALGRAMMDEADRAMYQAKHNGRNRV 358 >gi|291287062|ref|YP_003503878.1| response regulator receiver modulated diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] gi|290884222|gb|ADD67922.1| response regulator receiver modulated diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] Length = 424 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 94/172 (54%), Gaps = 6/172 (3%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 EL +++++L L ++N+ +S Y K S++ D D FK +N++ + +G Sbjct: 257 ELIAVTDKLTRLHNRQKLDQVMNYE--MSQFQRYGTKFSVIIIDADDFKTVNNSHSYHIG 314 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DK++ +S L++ GR GG+EF +SE +A I+A LRK I I Sbjct: 315 DKILVKISGILLMNVRDSDTCGRWGGDEFLVILPKASEGDAVIVAEKLRKTIAERDYGID 374 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + ++T+S G+AE E ++ ++ A +ALY AKKSG+N +V +S+ +N Sbjct: 375 N----NVTVSIGVAEIEKGETVAKLVASAGKALYKAKKSGKNCIVAYSETDN 422 >gi|220932964|ref|YP_002509872.1| diguanylate cyclase [Halothermothrix orenii H 168] gi|219994274|gb|ACL70877.1| diguanylate cyclase [Halothermothrix orenii H 168] Length = 510 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 9/172 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 YN+ +++ D L+GL N F+ + Y N LSI+ DID FK ND GH Sbjct: 336 YNKTQKMAITDGLTGLYNQRYFLEVIDKYFKTAREKNRHLSILIMDIDNFKNYNDVNGHL 395 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208 G+ ++ L+D + R GGEEFA ++ EA LA +RK IE + Sbjct: 396 AGNTALSRLTDIIKKSIRKKDVPCRFGGEEFAVLFPDTTRDEAYNLAETIRKNIEKTPFY 455 Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N P +T+S G+A + + ++ +ADQALY AK +G+NR+ FS Sbjct: 456 NEDVQPGGRLTVSLGLAIFPDDSQEVKDLLDKADQALYKAKNNGKNRIEFFS 507 >gi|82703806|ref|YP_413372.1| diguanylate cyclase [Nitrosospira multiformis ATCC 25196] gi|82411871|gb|ABB75980.1| response regulator receiver modulated diguanylate cyclase [Nitrosospira multiformis ATCC 25196] Length = 302 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 88/162 (54%), Gaps = 10/162 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q +R D L+G+ N ++ + L ++ S++ D+D+FK+IND +GHP GD++ Sbjct: 130 QATR-DYLTGVWNRASIMDYLQKELKRGARQDICTSVMIADLDHFKRINDTYGHPTGDEI 188 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + ++ V VGR GGEEF A G EA L + I + N +G Sbjct: 189 LQEAARRMSGVLRGYDRVGRYGGEEFLITASGCDWSEALALGERICSSIRSEPANSRAG- 247 Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 I +T+S GIA C + I +I ADQALY AK++GRN+V Sbjct: 248 QIDMTVSIGIATSCGQVNDIGELIAAADQALYQAKEAGRNQV 289 >gi|254456813|ref|ZP_05070241.1| ggdef domain protein protein [Campylobacterales bacterium GD 1] gi|207085605|gb|EDZ62889.1| ggdef domain protein protein [Campylobacterales bacterium GD 1] Length = 720 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+G +N F + YN LS + DID+FK IND +GH GD+++ Sbjct: 561 IDPLTGAVNRRKFEELSMQELERSNRYNSDLSFLMLDIDHFKSINDTYGHAAGDEILKHF 620 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + + + V R+GGEEF ++ A I A RK I S++ + I Sbjct: 621 ASICLDMARSLDIVARVGGEEFVVMLPETTIDGAYIFAERFRKEIYTSEVTVDEQI-IKY 679 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++S GIA + + + I+ RAD+ALY AK+SGRN + + Sbjct: 680 SVSIGIAILDNDKDVKDILQRADKALYKAKESGRNCTIVYK 720 >gi|254241535|ref|ZP_04934857.1| hypothetical protein PA2G_02235 [Pseudomonas aeruginosa 2192] gi|126194913|gb|EAZ58976.1| hypothetical protein PA2G_02235 [Pseudomonas aeruginosa 2192] Length = 525 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 103 LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N +F+ + + + DID+FK IND+ GH GD+ + Sbjct: 360 LASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKNINDSHGHLTGDRAL 419 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++ L +GRLGGEEFAA S +A +A LR +E +++ G Sbjct: 420 QRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRAGVEALRVSNPDGEP 479 Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+A R + + +++ RAD ALY AK GRNR Sbjct: 480 LRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNRT 520 >gi|297623029|ref|YP_003704463.1| diguanylate cyclase [Truepera radiovictrix DSM 17093] gi|297164209|gb|ADI13920.1| diguanylate cyclase [Truepera radiovictrix DSM 17093] Length = 192 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 15/171 (8%) Query: 96 SYNRISQLSR---IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDN 145 + R +QL R D L+G+ N ++ ++ L ++ DID+FK +ND Sbjct: 21 ATERAAQLERQAFFDALTGVANRWRAEALLASRLADLRCGAPPFGVLVVDIDHFKGVNDR 80 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH VGD V+ ++ QL + + R GGEEF A + E E A L LR+ + Sbjct: 81 YGHGVGDAVLREVAAQLSRHVRSGDTLARWGGEEFVVLAPAAGEGELARLGERLRQAVAA 140 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +G ++ +++ A R K+ +T+I RAD+ALY AK++GRNR V Sbjct: 141 APL---AGHAVTVSVGGACATR--KDVAATLIARADRALYRAKRAGRNRTV 186 >gi|261823092|ref|YP_003261198.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] gi|261607105|gb|ACX89591.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] Length = 362 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 11/184 (5%) Query: 79 SLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130 S++L I GS+L L Y + ++R D L+G L AF + +S Sbjct: 177 SVVLFAILGSLLSLLAKKYLIELPIIARYDDLTGYLRRDAFFLATNKAFSIANLTKRPVS 236 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ DID+FK +ND+FGH VGD + F++D F GR+GG+EFA + Sbjct: 237 VMLIDIDHFKLVNDSFGHSVGDDALRFVADTFKKSFRREDIFGRIGGDEFAIVLPNTGLD 296 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249 +A + + R+ I ++ + +SG I +T+S G+ E E +S ++ RAD LY+AKK Sbjct: 297 DAYTIVDRARERISDTPCDTASG-KIRLTVSIGLVEYHTAGEDLSEVMKRADDNLYIAKK 355 Query: 250 SGRN 253 + RN Sbjct: 356 T-RN 358 >gi|332993458|gb|AEF03513.1| GGDEF domain-containing protein [Alteromonas sp. SN2] Length = 987 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 8/173 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143 K+L +++ +S D L+GL N F S S Y + S++ DID+FKQIN Sbjct: 815 KDLEDVVEKLTLISSQDPLTGLKNRRYFTSRAHEAWDSYERYAQAFSLLIVDIDWFKQIN 874 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGD V+ +++ L + R GGEEF + E + LRK + Sbjct: 875 DTYGHHVGDLVLVKVAELLRTNLRNSDVICRWGGEEFLILLPQLNVHECYWVGEKLRKSV 934 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E + + G +++TI+AGIA+ + + I+ AD+ LY K GRN VV Sbjct: 935 EKASFHC-EGYDVNVTITAGIADIRESDSVEQCIHAADKKLYKGKADGRNAVV 986 >gi|330828098|ref|YP_004391050.1| GGDEF domain-containing protein [Aeromonas veronii B565] gi|328803234|gb|AEB48433.1| GGDEF domain protein [Aeromonas veronii B565] Length = 307 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 9/172 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQIND 144 S + LF ++ Q + D L+ L N F L + E+ +++ D+D+FK IND Sbjct: 133 STMHHLFHINTQLRQQALFDDLTRLPNRRYFHQQL--FLEQGICHTLILLDLDHFKLIND 190 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH +GD+V+ + L R+GGEEFA + E E LAN L Sbjct: 191 NYGHDIGDRVLQQFGELLQQHCPPGALAARVGGEEFALLLPVAHEAELQQLANTLLTATR 250 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I+ P+ +T+S G+ R KEP ++ R DQALY AK++GRN V Sbjct: 251 T----IAPDPTHTMTVSLGVGIREPKEPAVSLFKRVDQALYGAKEAGRNCAV 298 >gi|311696618|gb|ADP99491.1| diguanylate cyclase (GGDEF domain) [marine bacterium HP15] Length = 429 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QLS D L+GL N + L Y + S++ DID+FK IND++GHP GD Sbjct: 256 LEQLSITDELTGLYNRRYMLRKLQESVAQGERYGDTFSLISLDIDFFKTINDSYGHPTGD 315 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +D + V R GGEEF + EA +A LR ++ Sbjct: 316 AVLQRFADIIESRTRKSDIVARTGGEEFIIFMPNTGLSEAGHVAESLRIALQTESFVSDE 375 Query: 213 GPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVVC 257 G + T SAG+ E +T ++ DQ++Y AK++GRNRVV Sbjct: 376 GETFGTTFSAGVVNWSGAESQTTSVRDLLSACDQSMYAAKRAGRNRVVA 424 >gi|298505985|gb|ADI84708.1| sensor diguanylate cyclase, GAF domain-containing [Geobacter sulfurreducens KN400] Length = 352 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 11/176 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + R ++ D L+GL NH F ++ Y + L+I+ D+D FK+ ND +GHP Sbjct: 177 HARTRLMAITDSLTGLYNHRYFQQIFSRELNRAKRYEKPLAIIMLDVDDFKRFNDTYGHP 236 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQI 208 GDKV+A + D L + F R GGEEF L +E ++A+ +A LR+++E + Sbjct: 237 HGDKVLAAMGDFLGEALRSSDFAFRYGGEEF-IVLLPETEFDSALQVAERLRELVERRSL 295 Query: 209 NISSGPSIH-ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ G + +T+S G+A E ++ R D LY AK+ G+NRV + E Sbjct: 296 DVLKGLAPQGVTVSVGVASFPRDGESRGDMLKRVDDLLYRAKEFGKNRVYSRREDE 351 >gi|283850446|ref|ZP_06367734.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio sp. FW1012B] gi|283574017|gb|EFC21989.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio sp. FW1012B] Length = 430 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N + + G + + L+I+ FDID+FK +ND +GHP GD V+ L+ Sbjct: 276 DALTGIANRAGIDELLSRELHRTGRHADPLTIIMFDIDHFKAVNDTYGHPAGDAVLVALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + +GR GGEEF A + + LA LR +E + + +T Sbjct: 336 RLVADHVRDHDTLGRYGGEEFLIVAPQTDPEAGRQLAERLRAAVEKTVFPAAG----RVT 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+A ++ RAD+ALY AK++GRNRV Sbjct: 392 CSFGVATGHPGANARALVARADEALYKAKQTGRNRVA 428 >gi|104781380|ref|YP_607878.1| diguanylate cyclase [Pseudomonas entomophila L48] gi|95110367|emb|CAK15075.1| putative diguanylate cyclase (GGDEF) domain [Pseudomonas entomophila L48] Length = 468 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 13/169 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHP 149 R++ + ID L+G L SAF + E L+++ DID+FK IND GH Sbjct: 291 RLAHQASIDHLTGALTRSAFTQRANTLLESRQRDAQPMPLTLMMLDIDHFKSINDRHGHA 350 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD+V+ S L RLGGEEFA G + ++A A LR+ +++ I+ Sbjct: 351 LGDQVLRQFSLTLQDQLHEGELFARLGGEEFAIVMPGLAPEQARFSAERLRRTVQDLHIS 410 Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255 + + IT+S G+A + P S+ ++ +AD ALY AK GRNR+ Sbjct: 411 -QADQRLQITVSIGLAGCSTEYPSSSLDELLAQADLALYRAKAHGRNRI 458 >gi|81299301|ref|YP_399509.1| diguanylate cyclase with PAS/PAC sensor [Synechococcus elongatus PCC 7942] gi|81168182|gb|ABB56522.1| diguanylate cyclase with PAS/PAC sensor [Synechococcus elongatus PCC 7942] Length = 681 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 96/170 (56%), Gaps = 10/170 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 +S+ ++ D L+GL+N I+ + + + ++ +++F D+D FK +ND+FGH Sbjct: 514 QELSRQAKTDELTGLINRREAIARIQALCALDRRHGKEFAVLFCDLDCFKDVNDHFGHLA 573 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ ++ + + F R+GG+EF G S + A ++A LR ++ I+ Sbjct: 574 GDTVLQVVARRIKLAIRSNDFAARIGGDEFLVVLQGVHSLKNAVVIAEKLRYVVAQP-IS 632 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +G + T++ G+ E I T+I RAD A+Y K+SGR+RV+ F+ Sbjct: 633 TDAG-CVAQTMTIGVTLIQPAETIDTLIARADAAMYQGKQSGRDRVIPFA 681 >gi|56751038|ref|YP_171739.1| hypothetical protein syc1029_c [Synechococcus elongatus PCC 6301] gi|56685997|dbj|BAD79219.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 686 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 96/170 (56%), Gaps = 10/170 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 +S+ ++ D L+GL+N I+ + + + ++ +++F D+D FK +ND+FGH Sbjct: 519 QELSRQAKTDELTGLINRREAIARIQALCALDRRHGKEFAVLFCDLDCFKDVNDHFGHLA 578 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ ++ + + F R+GG+EF G S + A ++A LR ++ I+ Sbjct: 579 GDTVLQVVARRIKLAIRSNDFAARIGGDEFLVVLQGVHSLKNAVVIAEKLRYVVAQP-IS 637 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +G + T++ G+ E I T+I RAD A+Y K+SGR+RV+ F+ Sbjct: 638 TDAG-CVAQTMTIGVTLIQPAETIDTLIARADAAMYQGKQSGRDRVIPFA 686 >gi|332141148|ref|YP_004426886.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551170|gb|AEA97888.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 996 Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 10/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143 K+L ++++LS D L+GL N F + S++ DID+FK+IN Sbjct: 824 KDLEDVVEKLTRLSTQDSLTGLKNRRYFTQRAKAEWQEFQRHGRTFSLLLLDIDFFKRIN 883 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GD V+ ++ L + R GGEEF EQEA +A LRK + Sbjct: 884 DEYGHQIGDAVLVKIAKTLENNLRESDVIARWGGEEFLILLPSLKEQEAYWVAEKLRKAV 943 Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + I S P +++TI+ G+A+ + + I I+ D+ LY K++GRN VV Sbjct: 944 --ASLVIDSPPHQLNVTITCGVADIKNYDSIEACIHAVDKKLYKGKEAGRNAVV 995 >gi|297538153|ref|YP_003673922.1| diguanylate cyclase [Methylotenera sp. 301] gi|297257500|gb|ADI29345.1| diguanylate cyclase [Methylotenera sp. 301] Length = 639 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 8/185 (4%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 ++ +++L +++S+ ID L+G+LN IS L + DID Sbjct: 447 VAQQKIQQLQAELSQLSEKVSIDQLTGVLNRRGLDEAMLREISRAQRGASSLCVALLDID 506 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK NDN+GH VGD + L+ + R GGEEF ++ A + Sbjct: 507 NFKHFNDNYGHNVGDTALQHLAKVIQETLRPTDIAARFGGEEFVILLPDTTIDAAVETIS 566 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 L++ + Q + + + IT SAGIA E +TI+ RADQA+Y+AKKSG+NRV+ Sbjct: 567 RLQRAL-TKQFFLGNNERLLITFSAGIALFRETEEQATILNRADQAMYLAKKSGKNRVMT 625 Query: 258 FSDIE 262 D+E Sbjct: 626 EVDLE 630 >gi|39996968|ref|NP_952919.1| GGDEF domain-containing protein [Geobacter sulfurreducens PCA] gi|39983856|gb|AAR35246.1| GGDEF domain protein [Geobacter sulfurreducens PCA] Length = 342 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 93/176 (52%), Gaps = 11/176 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + R ++ D L+GL NH F ++ Y + L+I+ D+D FK+ ND +GHP Sbjct: 167 HARTRLMAITDSLTGLYNHRYFQQIFSRELNRAKRYEKPLAIIMLDVDDFKRFNDTYGHP 226 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQI 208 GDKV+A + D L + F R GGEEF L +E ++A+ +A LR+++E + Sbjct: 227 HGDKVLAAMGDFLGEALRSSDFAFRYGGEEF-IVLLPETEFDSALQVAERLRELVERRSL 285 Query: 209 NISSGPSIH-ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ G + +T+S G+A E ++ R D LY AK+ G+NRV + E Sbjct: 286 DVLKGLAPQGVTVSVGVASFPRDGESRGDMLKRVDDLLYRAKEFGKNRVYSRREDE 341 >gi|194367647|ref|YP_002030257.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] gi|194350451|gb|ACF53574.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] Length = 400 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 11/168 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +R D L+GLLN SA ++ G L+++ D+D+FKQ+ND GH GD+V+ Sbjct: 222 ARTDGLTGLLNRSAVLAD-GQVQLQRSRRQGRPLALLLVDVDHFKQVNDRCGHLAGDQVL 280 Query: 156 AFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +D L V G +GR GGEEF G +++ A A +R ++ ++SGP Sbjct: 281 RHFADLLQHCVQGHDHLLGRYGGEEFVLVLQGRTQRAAMERAVAIRTRLQQYPALLASGP 340 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +T S G+A + +ST++ AD ALY AK +GR+R+VC + E Sbjct: 341 -VSVTASIGLAMDEGQGDLSTLLAAADAALYRAKAAGRDRLVCATPAE 387 >gi|237793653|ref|YP_002861205.1| GGDEF/HD domain protein [Clostridium botulinum Ba4 str. 657] gi|229263853|gb|ACQ54886.1| GGDEF/HD domain protein [Clostridium botulinum Ba4 str. 657] Length = 567 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 9/172 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L D L+ + NH F +L NE LS++F DIDYFK ND +GH G Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKKVIECEEENEALSMIFIDIDYFKHYNDLYGHQKG 248 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210 D+V+ + + L V R GGEEF+ +SE+EA +A ++RK IE + Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFSVLLPNTSEEEAINIAENIRKKIEYTYFEGE 308 Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261 + P+ ++T+S GI+ +K +I AD ALY AK +NRV ++ I Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360 >gi|163782642|ref|ZP_02177639.1| diguanylate cyclase (GGDEF domain) [Hydrogenivirga sp. 128-5-R1-1] gi|159882215|gb|EDP75722.1| diguanylate cyclase (GGDEF domain) [Hydrogenivirga sp. 128-5-R1-1] Length = 283 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 12/159 (7%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+G N I Y LS++F D+D FK++ND +GH GD+V+ Sbjct: 126 LADTDSLTGFYNRRKIEEILAKEIERSRRYGNPLSVLFIDVDNFKELNDTYGHKSGDEVL 185 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++ + +VGR GGEEF + Q A +A +RK +E Sbjct: 186 RKIAEIIKSELRRTDYVGRFGGEEFMVILPETDSQSALRVAERIRKRVEREDFKTGK--- 242 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +T+S G+ E + ++T+ R D+A+Y+AK+ G+NR Sbjct: 243 --VTVSVGVTELKEGDDLNTLFNRVDRAMYLAKERGKNR 279 >gi|325678897|ref|ZP_08158495.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8] gi|324109401|gb|EGC03619.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8] Length = 337 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 9/225 (4%) Query: 35 FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94 FS+ +A + I+ ++ Y G P Y E L+ S + L+ Y + +++ + Sbjct: 118 FSVSMALLSLISTGYVAYFG--PVYEREQKYAAIFWLINASSVMGFLIFY-TNFLIQTII 174 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGHPVG 151 S ++++++ +D L+GL N I+ L +E S + DID FK+IND +GH G Sbjct: 175 SSEEKLNEIALVDRLTGLYNRHYMINCLDKMDEDYSSAYLAMADIDDFKKINDTYGHNAG 234 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ +S+++ V R GGEEF + EQ ++ N LRK I + +++ Sbjct: 235 DVVLEKVSEKMKSE-CRGCTVSRWGGEEFLILIPPAVEQPVELIEN-LRKNIASEKVHYE 292 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +TI+AGI+ R + I I D LY K SG+N+VV Sbjct: 293 D-KEISVTITAGISPRTDEHSIDQWIQTVDGKLYDGKHSGKNKVV 336 >gi|27366763|ref|NP_762290.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6] gi|37676475|ref|NP_936871.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|27358330|gb|AAO07280.1| GGDEF domain protein [Vibrio vulnificus CMCP6] gi|37201017|dbj|BAC96841.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 414 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 24/178 (13%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +L+ ID L+ L + A + + SI D+D+FK+ ND +GH GD V+ + + Sbjct: 236 ELAFIDVLTQLPSRRALEMDVKHLGRRFSIAMIDVDHFKKFNDTYGHDTGDDVLKLVGSR 295 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS--- 215 L+++ G V R GGEEF G + +E +D+R+ I N + N ++ PS Sbjct: 296 LLLIKGGAK-VYRYGGEEFTVVFKGKTSKEVQGYLDDIREDIANYDLVLRNDTTRPSKAS 354 Query: 216 ---------------IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +++T+S G+++ R K+P TI AD+ALY AKK+GRN+V+ Sbjct: 355 EGKKRRGTQENTMNTVNVTVSIGVSDSRSSKDP-DTIRSLADEALYKAKKAGRNQVMT 411 >gi|126668320|ref|ZP_01739279.1| hypothetical protein MELB17_11535 [Marinobacter sp. ELB17] gi|126627237|gb|EAZ97875.1| hypothetical protein MELB17_11535 [Marinobacter sp. ELB17] Length = 308 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 92/174 (52%), Gaps = 10/174 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148 ++ + Q S D L+G+ N A +L G +NE S++ D+D+FK +NDN GH Sbjct: 136 QFSAMEQASLTDSLTGIGNKRAMDEALQKAQLLAGRHNETYSLILCDLDHFKAVNDNCGH 195 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQ 207 VGD V+ ++ L + V R GGEEF A L ++Q AA+ +A +R I Q Sbjct: 196 VVGDIVLKRAAEALESAVRSSDSVYRFGGEEF-AVLLPHTDQLAAVDVAERIRLAIAALQ 254 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I+ S S+ +TIS G+A E + RAD+ALY AK GRN F+ I Sbjct: 255 ID-SEEHSVAVTISCGVALHRAGEGSGQWLARADEALYRAKDQGRNCTRVFATI 307 >gi|120553290|ref|YP_957641.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120323139|gb|ABM17454.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 523 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 83/170 (48%), Gaps = 12/170 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152 + + S D L+GL N F E L ++ FDID+FK ND GH GD Sbjct: 355 LQRFSYEDSLTGLKNRRYFDELFRHEREVSARSDRPLCLLIFDIDHFKLFNDCHGHEAGD 414 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + + D L F V R GGEEF+ G+S EA A LR I + Sbjct: 415 QALRMVGDVLATCFRGSDTVCRYGGEEFSVLMPGASLDEARQRAEQLRAAISAEPVEHRG 474 Query: 213 GPSIHITISAGIAERCHKE--PISTIIYR-ADQALYVAKKSGRNRVVCFS 259 +TISAGIA C +E P ++R ADQALY AK++GRNRVV S Sbjct: 475 ENLGSLTISAGIA--CWRENCPEFDELFRAADQALYQAKETGRNRVVAAS 522 >gi|78486192|ref|YP_392117.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78364478|gb|ABB42443.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2] Length = 620 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 15/175 (8%) Query: 101 SQLSRI---DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 SQL + D L+G+ N F +L Y S+ F DID+FK IND +GH V Sbjct: 451 SQLEHLIIHDELTGVYNRHYFNRTLEQEIKRHQRYQSPFSMAFMDIDHFKMINDTYGHDV 510 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ L+ + + + R+GGEEF +S + A I++ +R +E I+ Sbjct: 511 GDAVLVSLAKNISSLLRSTDVFCRVGGEEFVIMMPETSLENALIISERIRSTVEG--ISS 568 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 P ITIS G+ E + + + RAD+ALY AK++GRNR+ + +E+ T Sbjct: 569 KDVPE-KITISMGLVELNSWDNVQSFYKRADEALYKAKENGRNRIE--TQVEDRT 620 >gi|52859175|ref|ZP_00055746.3| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 348 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 8/166 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ N F G +++ DID+FK+IND +GH GD Sbjct: 181 LEELASRDSLTQTANRRHFEHLAGLELDHARRMGRSFALLALDIDHFKRINDTWGHAAGD 240 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + ++ + +GR+GGEEFA A + A ++A LR + + + Sbjct: 241 EALKAFANACRLSLREYDILGRIGGEEFAVALPNTGPDGARVIAERLRAAVAELVVRPAK 300 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G +T+S G+A+ R I T++ RADQALY AK +GRNRVV Sbjct: 301 GELFELTVSIGVAQLREGDLTIDTLLERADQALYRAKHAGRNRVVA 346 >gi|193078679|gb|ABO13734.2| putative domain GGDEF protein [Acinetobacter baumannii ATCC 17978] Length = 397 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 3/167 (1%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 I +LS+ID L+ +LN + + L + +E+ +++ DID+FK+IND +GH GD+V+ Sbjct: 227 IQRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLI 286 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L +GR GGEEF + +A +A R+ ++ I + I Sbjct: 287 EIARCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQI 346 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 H++ S GI+ +I +ADQALY K SGRN+V F + Sbjct: 347 HVSASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQLPQ 393 >gi|311696694|gb|ADP99567.1| GGDEF domain-like protein [marine bacterium HP15] Length = 409 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 8/162 (4%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q++ D L+GLLN + Y +++++ D D+FK +ND +GH GD Sbjct: 234 LEQMATRDPLTGLLNRREMSRVLDEELQRARRYQRPMAVLWVDFDHFKDVNDTYGHAAGD 293 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +S L+ + +GR GGEEF +EA A LR+ + + + Sbjct: 294 SVLRAISRLLLGSVRSVDSIGRFGGEEFVIVLPEMDLEEAQETAERLRRKVAEEPQPLGN 353 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 G ++ +TIS G+A H + ST+ AD+A+Y+AK GRN Sbjct: 354 GEAVPLTISVGVAVYPDHGQTASTLCAAADKAMYLAKDRGRN 395 >gi|254521531|ref|ZP_05133586.1| diguanylate cyclase (ggdef domain) with gaf sensor [Stenotrophomonas sp. SKA14] gi|219719122|gb|EED37647.1| diguanylate cyclase (ggdef domain) with gaf sensor [Stenotrophomonas sp. SKA14] Length = 356 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 84/167 (50%), Gaps = 21/167 (12%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++ SR D L+GL N A ++L G+ + DID+FK IND GH GD Sbjct: 196 LAEQSRTDALTGLPNRRAMAAALEEAVAMNGAQPGAACVALLDIDHFKHINDFQGHATGD 255 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIENSQIN 209 +V+A L L F R GGEEF A + A DLR + E ++ Sbjct: 256 RVLAELGTLLRTHFAGRGMAARYGGEEFV----------AVMPATDLRAAERQCEFLRLA 305 Query: 210 ISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ P +TIS G+A+ E + ++ RAD+ALY AK +GRNRV Sbjct: 306 VAELPLGFPVTISIGVAQHQSGESVDQMLARADKALYRAKGNGRNRV 352 >gi|187777066|ref|ZP_02993539.1| hypothetical protein CLOSPO_00611 [Clostridium sporogenes ATCC 15579] gi|187773994|gb|EDU37796.1| hypothetical protein CLOSPO_00611 [Clostridium sporogenes ATCC 15579] Length = 565 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 9/173 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ L D L+ + NH F +L NE LS++F DIDYFK ND +GH Sbjct: 186 KKLESLVNRDGLTDVYNHRFFHDALSKEIIECEEKNEALSMIFIDIDYFKHYNDLYGHQK 245 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 GDKV+ + + L V R GGEEFA +SE+EA +A +R+ IE + Sbjct: 246 GDKVLKTIGEILKNNTREGDIVARYGGEEFAVLLPNTSEEEAINIAEKIRRKIEYTYFEG 305 Query: 210 ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261 + P+ ++T+S GI+ +K +I AD ALY AK +NRV ++ I Sbjct: 306 EENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 358 >gi|157693778|ref|YP_001488240.1| diguanylate cyclase [Bacillus pumilus SAFR-032] gi|157682536|gb|ABV63680.1| possible diguanylate cyclase [Bacillus pumilus SAFR-032] Length = 529 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 6/163 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 + + + ID L+ + N S+FI L + +++ FDID+FKQIND GH +GD+ Sbjct: 354 EELERRAYIDGLTNIFNRSSFIERTQMILEEDAQDTAVMLFDIDFFKQINDTHGHHIGDE 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + + GR GGEEFA S +EA +A +R E S + Sbjct: 414 ALRHVVTICQQHLQMDDLFGRYGGEEFAICLPHHSFEEACHIAERIRHSFEMSFFE-NEE 472 Query: 214 PSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRV 255 + +T S GIA + + T+++ ADQALY++K+ GRNR+ Sbjct: 473 EKVRVTASFGIAHTAYDPNVLETLLFEADQALYMSKRQGRNRI 515 >gi|268679299|ref|YP_003303730.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268617330|gb|ACZ11695.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 417 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 8/164 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 +I +++ D LSGL N F ++ Y E ++ D+D FKQIND GH VG Sbjct: 252 KIKDMAQNDFLSGLANRRYFFDAMQEYFKEARKQKESFALGLIDVDKFKQINDTLGHRVG 311 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI L+ L F+ R+GG+EF +++A L+ + +I +S Sbjct: 312 DQVIVALAKTLKEQLTHDHFIARIGGDEFCLVLKDIEQKKALEFFIKLQCAVAKIEIPVS 371 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + +++S G+ E + +I +AD+ALY AKK+GRNRV Sbjct: 372 AEEKVGVSVSIGVT-FNDLESVEEMINQADKALYKAKKNGRNRV 414 >gi|325982459|ref|YP_004294861.1| periplasmic/7TM domain sensor diguanylate cyclase [Nitrosomonas sp. AL212] gi|325531978|gb|ADZ26699.1| periplasmic/7TM domain sensor diguanylate cyclase [Nitrosomonas sp. AL212] Length = 568 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 10/159 (6%) Query: 106 IDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 ID L+ L N AF SL S S++ DID FK +NDN+GHPVGD V+ Sbjct: 405 IDLLTNLNNRRAFYKFVQPMWAISLRS-KSSTSVIILDIDDFKLLNDNYGHPVGDLVLVR 463 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L++ + + + R GGEEF + +A +A+ +RK I QI+I +G I Sbjct: 464 LAETIQKEARSGDILARWGGEEFLIFLPETQLADAITIADRMRKRITTIQISIDNGEKIS 523 Query: 218 ITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 T S G+A ++ +I +AD+ LY AKK GRNRV Sbjct: 524 FTASFGVATTQDINVSLNELIAQADRQLYHAKKKGRNRV 562 >gi|15598066|ref|NP_251560.1| hypothetical protein PA2870 [Pseudomonas aeruginosa PAO1] gi|116050873|ref|YP_790304.1| hypothetical protein PA14_26970 [Pseudomonas aeruginosa UCBPP-PA14] gi|254235857|ref|ZP_04929180.1| hypothetical protein PACG_01800 [Pseudomonas aeruginosa C3719] gi|9948959|gb|AAG06258.1|AE004713_7 hypothetical protein PA2870 [Pseudomonas aeruginosa PAO1] gi|115586094|gb|ABJ12109.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126167788|gb|EAZ53299.1| hypothetical protein PACG_01800 [Pseudomonas aeruginosa C3719] Length = 525 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 103 LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N +F+ + + + DID+FK IND+ GH GD+ + Sbjct: 360 LASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKNINDSHGHLTGDRAL 419 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++ L +GRLGGEEFAA S +A +A LR +E +++ G Sbjct: 420 QRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRAGVEALRVSNPDGEP 479 Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+A R + + +++ RAD ALY AK GRNR Sbjct: 480 LRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNRT 520 >gi|326318686|ref|YP_004236358.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375522|gb|ADX47791.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 568 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 31/224 (13%) Query: 57 PFY--GLEYILVENLSLVIISITISLL-----LGYISGSI---LKELFISYNRISQ---- 102 P Y G + + V L+ S+T SLL L ++ S+ ++E ++ ++ +Q Sbjct: 345 PRYPDGTDTLEVAQLNRSFQSMTASLLEREQELSRLNTSLENQVRERTLALHQANQELEN 404 Query: 103 LSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N F +L +Y+ + +++ D D+FK++ND GH GD V+ Sbjct: 405 LAVRDPLTGLYNRRRFDEALQAYSARCRELGHRFALMIVDADHFKRVNDTHGHQTGDAVL 464 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGP 214 L+ + + FV R GGEEF +E ++A +R + ++ P Sbjct: 465 RHLAGVITGCMRSTDFVARFGGEEFVVLMPEPRDREEGRLVAEKIRLAVGHTPF-----P 519 Query: 215 SI-HITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255 + H+T+S G+A CH EP+++I+ RAD+ALY AK GR+RV Sbjct: 520 GVGHLTVSIGLAF-CHGGGEPLASILERADKALYQAKGEGRDRV 562 >gi|156977902|ref|YP_001448808.1| hypothetical protein VIBHAR_06694 [Vibrio harveyi ATCC BAA-1116] gi|156529496|gb|ABU74581.1| hypothetical protein VIBHAR_06694 [Vibrio harveyi ATCC BAA-1116] Length = 337 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LS L N AF S L N+ +++V DID+FK NDN+GH GD VI ++ +L Sbjct: 181 DGLSNLYNRRAFDSDLQMLIDSNQAMTLVMLDIDHFKAFNDNYGHLFGDTVIKAIARRLQ 240 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221 + R GGEEFA S + A+ LR++IE ++ + SG + IT S Sbjct: 241 QSCRDGISAYRFGGEEFALIIPNKSLRIGRQYADTLRRMIEKLRVRDKRSGSQVQSITAS 300 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE + + +++ +AD+ LY AK+ GRNRV+ Sbjct: 301 FGVAEYEVGDTLESLVNKADKQLYEAKQLGRNRVM 335 >gi|242278403|ref|YP_002990532.1| diguanylate cyclase with extracellular sensor [Desulfovibrio salexigens DSM 2638] gi|242121297|gb|ACS78993.1| diguanylate cyclase with extracellular sensor [Desulfovibrio salexigens DSM 2638] Length = 442 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 15/166 (9%) Query: 100 ISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + Q+S+ D L+GL N H F YN ++ + DID FK IND +GH VG Sbjct: 281 LRQMSQTDMLTGLYNRRKMDEIMHHEF-DRFKRYNTPITFILIDIDNFKTINDTYGHAVG 339 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ L+ +GR GGEEF ++ E I+A LR+ I ++ Sbjct: 340 DNVLVRFAEILISNTRKTDRIGRWGGEEFIVVCPETTSGEGMIIAEKLRQRIAETRF--- 396 Query: 212 SGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P+I + T S GI E ++ ++ R D ALY +K+ GRN+V Sbjct: 397 --PTINNCTASFGITEINQQDDFMSLFARCDTALYSSKEQGRNKVT 440 >gi|222833111|gb|EEE71588.1| predicted protein [Populus trichocarpa] Length = 496 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLL ++F+ E+L +++ D+D+FK IND GH GD+V+ +S Sbjct: 312 DALTGLLARTSFLERAQRTLERLQRERQSGAMLMLDLDHFKHINDRHGHAAGDRVLQEVS 371 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L +GRLGGEEFA G+ A +A L + +I+++ G +I T Sbjct: 372 ARLSQALRPHELIGRLGGEEFAVLLPGADCVTARAVAQRLCEATREIRIDMNDGAAICPT 431 Query: 220 ISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNR 254 +S GI P +S ++ AD ALY AK SGR+R Sbjct: 432 LSIGIGCTNMAYPPLGLSALLRMADTALYQAKASGRDR 469 >gi|218507747|ref|ZP_03505625.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5] Length = 146 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 2/127 (1%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ FDID+FK +ND +GH GD+VI +++L RLGGEEFA + Sbjct: 3 AVIVFDIDHFKSVNDRYGHAAGDRVIMVFAEELQAHCSAGDTAARLGGEEFALVLKEMTP 62 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248 A ++A +R+ E +I+I G + T+S G+A R T++ AD+ALY AK Sbjct: 63 GRAELVAERIRRAFEAREIDI-DGQMLRCTVSVGVAPGRSQLPDFDTMLSAADKALYAAK 121 Query: 249 KSGRNRV 255 + GRNRV Sbjct: 122 RGGRNRV 128 >gi|160898917|ref|YP_001564499.1| diguanylate cyclase [Delftia acidovorans SPH-1] gi|160364501|gb|ABX36114.1| diguanylate cyclase [Delftia acidovorans SPH-1] Length = 496 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLL ++F+ E+L +++ D+D+FK IND GH GD+V+ +S Sbjct: 312 DALTGLLARTSFLERAQRTLERLQRERQSGAMLMLDLDHFKHINDRHGHAAGDRVLQEVS 371 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L +GRLGGEEFA G+ A +A L + +I+++ G +I T Sbjct: 372 ARLSQALRPHELIGRLGGEEFAVLLPGADCVTARAVAQRLCEATREIRIDMNDGAAICPT 431 Query: 220 ISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNR 254 +S GI P +S ++ AD ALY AK SGR+R Sbjct: 432 LSIGIGCTNMAYPPLGLSALLRMADTALYQAKASGRDR 469 >gi|78777239|ref|YP_393554.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78497779|gb|ABB44319.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas denitrificans DSM 1251] Length = 791 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 13/169 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 RI + S D L+GL N F ++ N+ L ++ DIDYFKQ ND +GH G Sbjct: 617 RIEEYSITDALTGLYNRRFFDTNFNKEYKISKRDNKNLVLLIIDIDYFKQYNDYYGHQKG 676 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209 D+++ +S + +F +V RLGGEEF + + ++ A A LRK IE+ +I + Sbjct: 677 DEILKLVSLSMKSLFKRANDYVYRLGGEEFGISFYTNDKESALKRAESLRKNIEHLKIEH 736 Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 SS S +++IS GI+ + C E ++ I D+ALY AK GRNRV Sbjct: 737 ASSEISGYLSISIGISFIPKECAME-VNEIYNITDKALYRAKNKGRNRV 784 >gi|254974720|ref|ZP_05271192.1| putative signaling protein [Clostridium difficile QCD-66c26] gi|255313846|ref|ZP_05355429.1| putative signaling protein [Clostridium difficile QCD-76w55] gi|255516527|ref|ZP_05384203.1| putative signaling protein [Clostridium difficile QCD-97b34] gi|260682791|ref|YP_003214076.1| putative signaling protein [Clostridium difficile CD196] gi|260686389|ref|YP_003217522.1| putative signaling protein [Clostridium difficile R20291] gi|260208954|emb|CBA61984.1| putative signaling protein [Clostridium difficile CD196] gi|260212405|emb|CBE03256.1| putative signaling protein [Clostridium difficile R20291] Length = 572 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 10/153 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ + N +F Y EK ++V DID FK INDN+GH GD VI +++ + Sbjct: 425 DGLTNVYNRKSFDIMYEKYREKDDNFALVMIDIDNFKLINDNYGHKFGDTVIKGITNTIC 484 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V+ V R GGEEF+ S +E A + +++R I N + N + +TISAG Sbjct: 485 VMLEQDDKVFRYGGEEFSVLIRNKSGEEVADIIDNIRVAIANKKWN----DDVTVTISAG 540 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +A H ++ AD+ LY AK+ GRN+VV Sbjct: 541 VA---HISDSKDVLEEADKNLYKAKQLGRNKVV 570 >gi|254456946|ref|ZP_05070374.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207085738|gb|EDZ63022.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 443 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 11/167 (6%) Query: 101 SQLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDK 153 ++ D L+GL F +SS S ++ +S++ DIDYFK++ND +GH GDK Sbjct: 281 ENIASTDALTGLYTRHKFFQLYLSSYTSMVQRHNYMSLILVDIDYFKKVNDVYGHNAGDK 340 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L+ + V R GGEEF + + A +A LR IE I++ Sbjct: 341 TLVQVAHTLLKILRNVDVVCRWGGEEFLIMLPTADMEHAIFIAQKLRVSIEELSIDVVG- 399 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++T S G+++ E + I RAD+ALY+AK SGRN V C D Sbjct: 400 ---NVTASFGVSQVREGEEMQDAIDRADKALYLAKDSGRNCVKCEMD 443 >gi|83311629|ref|YP_421893.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1] gi|82946470|dbj|BAE51334.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1] Length = 386 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 27/240 (11%) Query: 35 FSIFIATVIFIANIFLFYI-GLTPFYGLEYI---------LVENLSLVIISITISLLLGY 84 ++ +A ++ AN F + GL+ + LE++ +V ++ + ++I+++L + Sbjct: 148 LAMRLAGWVYFANALFFLVRGLSIGFDLEFMAGKMSYGMTVVASMWWLCVTISVTLCMVL 207 Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDI 136 ++ L+ + Q SR D L+G LN AF +SLG LS++ D+ Sbjct: 208 MASERLQA-----DLNEQASR-DPLTGALNRRAF-ASLGEREIVRARRTASPLSLLMIDM 260 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FKQIND GH GD+V+ + + R GGEEF A SS EA +A Sbjct: 261 DHFKQINDCLGHGGGDEVLVLFATLAGRILRAEDLFCRFGGEEFLALLPSSSLMEAMGVA 320 Query: 197 NDLRKII--ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 LR E + ++ +T+S GIA E + I RAD ALY AK GRNR Sbjct: 321 ERLRAAFSAEGAGLDSEGKLPFPMTLSVGIAALAADEDMEAAIRRADAALYRAKDLGRNR 380 >gi|109898022|ref|YP_661277.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109700303|gb|ABG40223.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 370 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 11/188 (5%) Query: 76 ITISLLL---GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SY 125 IT+SLL Y K L + +R+D LSGL N + L + Sbjct: 178 ITVSLLFVFYEYSRQRSFKTLQELSREFEKQARLDPLSGLQNRRGMLEKLEYEHQRTLRH 237 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 ++ L+++ DID+FK++ND FGH VGD VI + V R GGEEF Sbjct: 238 HKNLTLMMCDIDHFKRVNDKFGHDVGDGVITQVGQLFDKALRKQDTVARWGGEEFLFLLP 297 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 +++++A LA LR + Q S S +T+S GI + ++ + I RAD LY Sbjct: 298 ETTQEQAFTLAEKLRAQVSKQQYQAGS-DSFTVTVSLGIYQMHPQDNLDHAISRADTNLY 356 Query: 246 VAKKSGRN 253 AK +GRN Sbjct: 357 RAKSNGRN 364 >gi|289548504|ref|YP_003473492.1| diguanylate cyclase with PAS/PAC, CBS and GAF sensors [Thermocrinis albus DSM 14484] gi|289182121|gb|ADC89365.1| diguanylate cyclase with PAS/PAC, CBS and GAF sensors [Thermocrinis albus DSM 14484] Length = 822 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 Y++ LS++ D+D FK IND +GH VGD+ + + L V VGR GGEEF Sbjct: 690 YSKPLSVILADLDNFKTINDTYGHHVGDECLQTFAHVLNRVVRGSDVVGRYGGEEFILVL 749 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243 + ++ AA+LA +R + +S I + G +++T S G+A E ++T+I ADQ Sbjct: 750 PETDKEGAAMLAERIRLAVRSSSIRFTGG-CVYLTASFGVASFPEDGEDVTTLIRVADQR 808 Query: 244 LYVAKKSGRNRVV 256 LY+AK G++RVV Sbjct: 809 LYIAKSQGKDRVV 821 >gi|227112497|ref|ZP_03826153.1| hypothetical protein PcarbP_06012 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 384 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 72/130 (55%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N LSI DID+FK +ND +GH GD ++ +++ L +V R GGEEF + Sbjct: 249 NTSLSIAMIDIDHFKTVNDTYGHAAGDSILKRIAEVLYGSTRNSDYVFRYGGEEFMIVLI 308 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 + + A + LRK I++ I + +G S+ +TISAGIA +I AD ALY Sbjct: 309 ETPKVAAHTIIERLRKKIQDHPIYLQNGESVTMTISAGIAVYSGHPDYECLIKAADDALY 368 Query: 246 VAKKSGRNRV 255 AK +GRNR+ Sbjct: 369 QAKANGRNRI 378 >gi|207722429|ref|YP_002252865.1| hypothetical protein ggdef [Ralstonia solanacearum MolK2] gi|206587608|emb|CAQ18190.1| hypothetical protein ggdef [Ralstonia solanacearum MolK2] Length = 467 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 8/176 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 L+EL +++++ L+ D L+GL N FI + + + S++ D+D FK I Sbjct: 291 LRELQAAHHKLEHLAATDPLTGLANRREFIGRVEAEIANANHVSAPFSVLALDLDRFKAI 350 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD V+ + + + V R+GGEEF A +A +R Sbjct: 351 NDTYGHQAGDHVLQRFAKKCLEAIRPHDGVARVGGEEFMVLLPKVPLNAAHAIAERIRTA 410 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I S + G ++ +T+S G++E I I+ AD+ LY AK GRNRV+ Sbjct: 411 IAASPFELGPGRAVPLTVSIGVSEFGRDGSDIDAILRSADERLYRAKHEGRNRVIA 466 >gi|161899047|ref|YP_198017.2| response regulator PleD [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 458 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++S D L+ N F + L + N +LS++ DIDYFK +ND+FGH GD+ Sbjct: 291 AEMSIKDPLTNCYNRRYFDTHLRNIIKDSVEKNRRLSLMILDIDYFKIVNDDFGHSAGDE 350 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ + ++ + R GGEEF ++ +A I+A +R+II +S Sbjct: 351 LLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTNISDAYIVAERIREIIATEPFILSDK 410 Query: 214 PSIH-ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 + H +T+S G+ E + I I RAD+ LY AK SGRNRVV Sbjct: 411 NTTHNVTVSIGVVEMQESDLDNIEKFIVRADRYLYKAKNSGRNRVVT 457 >gi|331007208|ref|ZP_08330417.1| GGDEF domain-like protein [gamma proteobacterium IMCC1989] gi|330418975|gb|EGG93432.1| GGDEF domain-like protein [gamma proteobacterium IMCC1989] Length = 427 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 9/163 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++ L+ D L+ LLN F +S L N++ ++V DID+FK +ND +GHP G Sbjct: 262 KLAILASRDPLTNLLNRRCFFERAEQELSRLKRNNKQAAVVIVDIDFFKVVNDKYGHPAG 321 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ +S L V R GGEEFA ++A +LA +RK I Q+ I Sbjct: 322 DAVLTVISKILKNSVRQHDLVSRFGGEEFAIFLSDVDMEKAIMLAERMRKNIAEQQV-IY 380 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 G I T S G++ + I+++I AD+ LY AK+SGRN Sbjct: 381 KGDIIKSTASFGLSMLTSDSQDINSVINDADKLLYEAKESGRN 423 >gi|253689587|ref|YP_003018777.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756165|gb|ACT14241.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 532 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 15/170 (8%) Query: 97 YNRISQLS---RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPV 150 + RI +LS D L+GLLN S+ + +++ + DID+FK++ND +GH + Sbjct: 356 HKRIGKLSLQAHTDPLTGLLNRRGIYESIELILPKSNQVAAIVIDIDHFKRVNDTYGHNI 415 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI L+ + + R GGEEF A + ++A +A LRK +E + I Sbjct: 416 GDDVIRLLAKSIKQGSRESDLICRTGGEEFLALLPDTDMKQAVDIAERLRKKVEKMPLPI 475 Query: 211 SSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVC 257 +ITIS G+ C E I ++ AD ALY AK GRNRVV Sbjct: 476 PE----NITISLGVT--CFIPGAEQIDNVLKIADDALYQAKHEGRNRVVT 519 >gi|254430045|ref|ZP_05043752.1| GGDEF domain protein [Alcanivorax sp. DG881] gi|196196214|gb|EDX91173.1| GGDEF domain protein [Alcanivorax sp. DG881] Length = 367 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 21/247 (8%) Query: 27 FMIYFSIFFSIFIATVIFIANI---FLFYIGLTPFY---GLEYILVENLSLVIISITISL 80 M+ F + + IA V F+A+ + ++ L + L L++ L +IS++ ++ Sbjct: 119 LMVSFRLSGKVMIA-VAFLASAAYALMLWVALMDRWVQLSLSVELLQWLVFAMISVSFAV 177 Query: 81 LLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------- 127 G ++ +EL + ++ +++ D L+GL N + L Sbjct: 178 TGGGVNRLRNALAEKNRELANAVEKVREMAIRDDLTGLFNRRHLLEILERQRALSDGKGV 237 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 ++ + D+D+FK+IND GH GD+V+ S+ + + GRLGGEEF S Sbjct: 238 PFAVCYVDLDHFKKINDRHGHDWGDRVLRQFSELALSGMRDGDYFGRLGGEEFLLVLPQS 297 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 A ++A LR+ + + GP+ +++S G+A+ E + ++ RADQ LY A Sbjct: 298 DAHGALLVAERLRQRWREQRFDAQGGPAT-VSLSVGVADYRDGESVDELLNRADQGLYKA 356 Query: 248 KKSGRNR 254 K GR++ Sbjct: 357 KSGGRDQ 363 >gi|13474448|ref|NP_106016.1| hypothetical protein mlr5331 [Mesorhizobium loti MAFF303099] gi|14025201|dbj|BAB51802.1| mlr5331 [Mesorhizobium loti MAFF303099] Length = 381 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 15/183 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +E+ ++ + + D L+ L N AF ++ G+ E ++F D+D FK++N Sbjct: 187 REIEVAKQQSDHSANHDALTDLPNRRAFHNELKSVVARCGATGEAAGLLFIDLDRFKEVN 246 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLR 200 D GH GD ++ +S QL + + FV RLGG+EFA +A + Q+A +A Sbjct: 247 DTLGHEAGDALLQRVSSQLRSILRSADFVARLGGDEFAFLFSADTELARQKAVRVAE--- 303 Query: 201 KIIENSQINI-SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +I+E +I + + +I + + G+A T+I AD+ +YV KKSGRNR+V Sbjct: 304 RILERLRIKVPTPNGAIQVGCTVGVAMYPAEAADCDTLIALADRLMYVGKKSGRNRLVTA 363 Query: 259 SDI 261 S++ Sbjct: 364 SEM 366 >gi|332872991|ref|ZP_08440952.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6014059] gi|332738835|gb|EGJ69701.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6014059] Length = 228 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 3/165 (1%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 I +LS+ID L+ +LN + + L + +E+ +++ DID+FK+IND +GH GD+V+ Sbjct: 58 IQRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFKKINDIYGHHQGDQVLI 117 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L +GR GGEEF + +A +A R+ ++ I + I Sbjct: 118 EIAQCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCRQALQELTIFNNQNIQI 177 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 H++ S GI+ +I +ADQALY K SGRN+V F + Sbjct: 178 HVSASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQL 222 >gi|329888165|ref|ZP_08266763.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] gi|328846721|gb|EGF96283.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] Length = 784 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 16/179 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQIN 143 L+ RI+ L+R D L+GL N ++F+ L + E L++ D+D FK++N Sbjct: 340 LRARMAQERRIAHLARNDSLTGLPNRASFLERLTRQKQTAAEGESLALFALDLDRFKEVN 399 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGD+++ +++++ F+ R GG+EF A A ++ EA +A LR+ + Sbjct: 400 DLYGHAVGDQLLCIIAERMKGALREGEFIARQGGDEFLALASVATRDEARAVAERLRQAV 459 Query: 204 ENS----QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + ++S G SI +++ A + +ST+I AD A+Y AK S + VCF Sbjct: 460 IQTVTLDHADVSCGASIGVSLWPEDA-----QDVSTLINNADLAMYRAKAS-LTQDVCF 512 >gi|209886197|ref|YP_002290054.1| cellulose synthesis regulatory protein [Oligotropha carboxidovorans OM5] gi|209874393|gb|ACI94189.1| cellulose synthesis regulatory protein [Oligotropha carboxidovorans OM5] Length = 397 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/194 (35%), Positives = 102/194 (52%), Gaps = 4/194 (2%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125 EN++LV+ SIT LG +S + L ++ I+ + + D L+GLLN A Sbjct: 185 AENINLVM-SITSIGGLGALSLA-LNQVRITRHHQREAEH-DSLTGLLNRRALFDKSQRV 241 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 +++V FD+D+FK +ND GH VGD V+ + L RLGGEEF Sbjct: 242 AAPVAVVVFDVDHFKAVNDRHGHQVGDTVLQTFASLLAANTREGDLAARLGGEEFVIVLS 301 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 G+ +A +A +R+ + + ISS +T+SAG+A + I ++ RAD ALY Sbjct: 302 GTMAAQAMQVAERVRESLAGQRF-ISSSGDFGVTVSAGVACENGEVDIIALLRRADFALY 360 Query: 246 VAKKSGRNRVVCFS 259 AK +GRNRV+ S Sbjct: 361 DAKHTGRNRVLLSS 374 >gi|90423626|ref|YP_531996.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gi|90105640|gb|ABD87677.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] Length = 635 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 4/170 (2%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+++L+ D L+ L N + L + ++LS++ D+D+FK+ ND FGH GD + Sbjct: 452 RLAELATTDGLTELANRRSMDDFLRLHFAAQDQLSLLLIDVDHFKRFNDRFGHQAGDACL 511 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L P R GGEEFA G +E A +A +R I I +G + Sbjct: 512 TRIAKVLAEAAPAPGLAARYGGEEFAIILPGVAEPHAIRIAEAVRLTIAALAIAHPNGAA 571 Query: 216 IHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIENN 264 +T+S GIA + + R AD A+Y AK+ GRNR V S + ++ Sbjct: 572 TTVTVSIGIASKTKATASEEDLVRAADLAMYAAKRGGRNRSVASSSLPDD 621 >gi|320159239|ref|YP_004191617.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O] gi|319934551|gb|ADV89414.1| GGDEF domain [Vibrio vulnificus MO6-24/O] Length = 333 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 85/162 (52%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 N++S+L+ +D L+G N A +L + ++ DID+FK IND +GH GD V Sbjct: 173 NKLSKLATLDPLTGTNNRLALKHRYQALKTQGTAFFLLVLDIDHFKAINDEYGHDGGDCV 232 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L + V G V R GGEEF G S Q A A +R+ I ++ I+ G Sbjct: 233 LRSLVKTMAHVVGEEN-VFRQGGEEFCILLAGVSHQHALKTAETIRQNIGDTPIHYREG- 290 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I +T+S G+AE + I +AD LY AK GRNRVV Sbjct: 291 AISVTVSIGLAEAHASSCVDEINRQADANLYDAKSQGRNRVV 332 >gi|290508759|ref|ZP_06548130.1| diguanylate cyclase [Klebsiella sp. 1_1_55] gi|289778153|gb|EFD86150.1| diguanylate cyclase [Klebsiella sp. 1_1_55] Length = 560 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 106/200 (53%), Gaps = 11/200 (5%) Query: 69 LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120 L+L+ + T+ LLL ++ +++ + + + + D L+ LLN A S Sbjct: 358 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 417 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + LS++ D+D+FK+IND +GH GD+V++ ++ L +GR+GGEEF Sbjct: 418 ACQRSGRPLSVIQLDLDHFKRINDRYGHQAGDRVLSTVASTLASTVREGDLLGRVGGEEF 477 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 ++ Q+A +A LR I+ ++ + + ++ ++ S G+ +E + + Sbjct: 478 CVVLPNTTLQDAVAVAERLRLRIQGREVFLHNNVTLRVSASLGVSTSEEQGEYQFEALQS 537 Query: 239 RADQALYVAKKSGRNRVVCF 258 AD+ LY+AK++GRN+ VCF Sbjct: 538 VADRRLYLAKQNGRNQ-VCF 556 >gi|170761628|ref|YP_001785670.1| GGDEF/HD domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169408617|gb|ACA57028.1| GGDEF/HD domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 567 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 9/172 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L D L+ + NH F +L NE LS++F DIDYFK ND +GH G Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 248 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210 D+V+ + + L V R GGEEFA +SEQ+A +A +R+ IE + Sbjct: 249 DQVLKTMGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRRKIEYTYFEGE 308 Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261 + P+ ++T+S GI+ +K +I AD ALY AK +NRV ++ I Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360 >gi|239994638|ref|ZP_04715162.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126] Length = 994 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++QLS D L+GL N F + +N S++ DID+FK+IND +GH VG Sbjct: 830 KLTQLSTQDALTGLKNRRYFTQRAKAAWQNYKRHNHTFSLLIVDIDFFKRINDEYGHHVG 889 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ L + R GGEEF QEA +A LRK + + +I+ + Sbjct: 890 DTVLIKIARILEDNLRESDVIARWGGEEFLILLPSLKVQEAFWVAEKLRKTVADYEID-A 948 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+ TI+ G+A+ + + I+ D+ LYV K+SGRN V+ Sbjct: 949 PPYSVSATITCGVADIRDYDSVEACIHAIDKKLYVGKESGRNAVI 993 >gi|239907124|ref|YP_002953865.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239796990|dbj|BAH75979.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 420 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 10/177 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL +S ++ LS D L+G+ N F+ SL ++ +++ DID FK IND Sbjct: 242 ELKMSEEKLDILSSTDQLTGVYNRRKFMESLHGELQRSARFDVSNALLSIDIDNFKAIND 301 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GHPVGD+ + +++ L +GR+GGEEF A G +++ A N R I+E Sbjct: 302 TYGHPVGDQALIYVAHILKNSLRQVDVLGRVGGEEFGVVAPGVGKEDVAPFLN--RLIVE 359 Query: 205 -NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 N + + I IT+S G I ++ +AD ALY +K G+NR + D Sbjct: 360 FNENLFDTQKEKIKITVSIGCVVFGRNNNIEEVLSKADSALYDSKHKGKNRFSIWRD 416 >gi|110803451|ref|YP_698847.1| GGDEF/HD domain-containing protein [Clostridium perfringens SM101] gi|110683952|gb|ABG87322.1| GGDEF/HD domain protein [Clostridium perfringens SM101] Length = 564 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ NH F L NEKLS++F DIDYFK ND +GH GD+ + + Sbjct: 197 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 256 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218 L + V R GGEEFA +SE+EA +A +R +E + + P+ + Sbjct: 257 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 316 Query: 219 TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258 T+S GIA K + + AD ALY AK +NRV + Sbjct: 317 TVSVGIAAFPDKAKSELELVKCADDALYRAKFFHKNRVETY 357 >gi|58418760|gb|AAW70775.1| PleD-like response regulator containing 2 CheY-like receiver domains and a GGDEF domain [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 448 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++S D L+ N F + L + N +LS++ DIDYFK +ND+FGH GD+ Sbjct: 281 AEMSIKDPLTNCYNRRYFDTHLRNIIKDSVEKNRRLSLMILDIDYFKIVNDDFGHSAGDE 340 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ + ++ + R GGEEF ++ +A I+A +R+II +S Sbjct: 341 LLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTNISDAYIVAERIREIIATEPFILSDK 400 Query: 214 PSIH-ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 + H +T+S G+ E + I I RAD+ LY AK SGRNRVV Sbjct: 401 NTTHNVTVSIGVVEMQESDLDNIEKFIVRADRYLYKAKNSGRNRVVT 447 >gi|313669502|ref|YP_004049928.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM 16994] gi|313156699|gb|ADR35375.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM 16994] Length = 648 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 17/169 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+GL N F I+ + LS+++ DID+FK+IND GH V Sbjct: 484 KKLEYVAQTDALTGLYNRLRFDDIVQREIAFGKRQDTPLSVIYMDIDFFKKINDTCGHDV 543 Query: 151 GD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD K IAF+ ++ P R GGEEF ++ QE +LA LR+ I + Sbjct: 544 GDIILKEIAFIIRDILRASDYPF---RWGGEEFIILCPSTTLQEIKVLAERLRERIAENN 600 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ + +T+S G+ + + E + +I RAD ALY AK++GRNR + Sbjct: 601 FSVYT----KVTVSIGLTQYHNDESVDEMIKRADLALYQAKENGRNRSI 645 >gi|311107002|ref|YP_003979855.1| diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310761691|gb|ADP17140.1| diguanylate cyclase, GGDEF domain protein 15 [Achromobacter xylosoxidans A8] Length = 531 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 24/222 (10%) Query: 60 GLEYILVENLSLVIISITISLLLG---------YISGSILKELFI--------SYNRISQ 102 GL Y + LS + ++T+ G Y L++ R++ Sbjct: 300 GLAYAIASPLSRLTRAMTVGKSAGVDIGRLNAWYAEADTLRDAVQLTLDQHQDEVGRLNT 359 Query: 103 LSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 + D ++GLLN A L +Y ++++ D+D+FK+IND FGH GDKV+ L+ Sbjct: 360 QALTDPMTGLLNRRAMTDVLDAYAADGTPVAVIAMDLDHFKRINDAFGHMTGDKVLIALA 419 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + R+GGEEF A + +A +A LR + + G +T Sbjct: 420 EVIRAGLRDQDRAFRVGGEEFIALLPTGAASQAGEVAERLRAAVARRLMPDGVG---RVT 476 Query: 220 ISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S GIA + S +I RAD+ALY +K++GRNRV + D Sbjct: 477 VSIGIALWPQDGDSASDVIQRADEALYESKQTGRNRVTLWHD 518 >gi|251772030|gb|EES52602.1| diguanylate cyclase [Leptospirillum ferrodiazotrophum] Length = 348 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 18/183 (9%) Query: 91 KELFISYNRIS---QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 KE+ I N +S Q S ID L+G++N F + + S + S++F DID FK Sbjct: 166 KEIEILKNELSAAAQASSIDPLTGVINRRGFEMRITECLKAQESRQGECSVLFIDIDNFK 225 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND+ GH VGD+++ ++ L V R GGEEF + +A I+A ++R Sbjct: 226 KINDDHGHSVGDRILLAVAQVLKGKTRGDDIVARFGGEEFVVVLPSTPIDKAHIVAENIR 285 Query: 201 KIIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +E +++ N + G +T+S GI + + RADQA+Y +KK G+NR Sbjct: 286 QNVERIALLSAKDNKTIGT---VTVSIGIDVHKSGQAWQKTVERADQAMYQSKKDGKNRT 342 Query: 256 VCF 258 + Sbjct: 343 TAY 345 >gi|224370431|ref|YP_002604595.1| ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic substrate binding component [Desulfobacterium autotrophicum HRM2] gi|223693148|gb|ACN16431.1| ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic substrate binding component [Desulfobacterium autotrophicum HRM2] Length = 404 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-SYNEKL------SIVFFDIDYFKQINDNFGHPVGD 152 I L + D L+GL N F + +N + SIV DIDYFK++ND FGH GD Sbjct: 200 IELLGQRDGLTGLYNRRYFDDAFEYEWNRAIRNRTAISIVMCDIDYFKRVNDAFGHLAGD 259 Query: 153 KVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + +D L VV V R GGEEF S + LA +R+++EN+ + Sbjct: 260 AYLRLTADVLKQVVRRETDIVARYGGEEFIFLIPDDSLENTVGLAERIRQMMENTALTF- 318 Query: 212 SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 G I T+S G+A + E TI+ AD A+Y AK GRNRVV + + Sbjct: 319 DGQIIRATVSLGVARLSPRPFEKKETIVSNADNAMYQAKSRGRNRVVAHGTVPD 372 >gi|171060216|ref|YP_001792565.1| PAS/PAC sensor-containing diguanylate cyclase [Leptothrix cholodnii SP-6] gi|170777661|gb|ACB35800.1| diguanylate cyclase with PAS/PAC sensor [Leptothrix cholodnii SP-6] Length = 438 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 9/162 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + D L+G+ N +F + LS++ FD D+FK IND GH GD V Sbjct: 272 QANDCDHLTGIANRRSFFEAAELELMRARQSPRPLSMILFDADHFKLINDRHGHHAGDAV 331 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L+ L F V R+GGEEFA + A +AN LR+ +E + + G Sbjct: 332 LRHLAALLTANFRQVDVVARVGGEEFAVLLPSTGLHGAVRVANRLRQAVEAQTVEV-DGV 390 Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 IH T+S G+A + ++ ADQALY AK +GRNR+ Sbjct: 391 EIHCTVSGGVATMAAGLSGLDALMKCADQALYAAKAAGRNRI 432 >gi|111221728|ref|YP_712522.1| hypothetical protein FRAAL2297 [Frankia alni ACN14a] gi|111149260|emb|CAJ60946.1| hypothetical protein; putative membrane protein; putative GGDEF domain [Frankia alni ACN14a] Length = 451 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 I LS++ DID+FK++ND FGH +GD ++ ++D L VGR GGE Sbjct: 304 IGRAARAGRPLSVLLVDIDHFKRVNDRFGHLIGDVILLAVADTLRATARPRDLVGRFGGE 363 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTII 237 EF + + A +A +R + ++ P + +T+S G+A + +S +I Sbjct: 364 EFVILLTEAGREHALDIAERIRSQVAGTRCRFDGCPPLSVTVSVGVATQDGSSGDLSALI 423 Query: 238 YRADQALYVAKKSGRNRV 255 RAD ALY AK GRNRV Sbjct: 424 ARADTALYRAKADGRNRV 441 >gi|296133268|ref|YP_003640515.1| response regulator receiver modulated diguanylate cyclase [Thermincola sp. JR] gi|296031846|gb|ADG82614.1| response regulator receiver modulated diguanylate cyclase [Thermincola potens JR] Length = 301 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 83/169 (49%), Gaps = 15/169 (8%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+G N F + + Y L++ DID+FKQ+ND +GH VGD V Sbjct: 131 ELSMRDELTGSYNRRYFNERLTEEVHRVKRYGRPLTVAMIDIDHFKQVNDTYGHQVGDFV 190 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L + L V R GGEEF A L +R +EN+ + P Sbjct: 191 LTKLVEFLQNNLRKSDLVARFGGEEFVVLLTEIDADSAERLMERIRSALENATFIYNREP 250 Query: 215 -----SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 S+ IT+S G+A C K+ II AD+ALY+AK +GRNR+V Sbjct: 251 LFEKISVKITVSIGLAS-CPKDATDPERIISLADEALYIAKNTGRNRIV 298 >gi|313108017|ref|ZP_07794184.1| hypothetical protein PA39016_001210023 [Pseudomonas aeruginosa 39016] gi|310880686|gb|EFQ39280.1| hypothetical protein PA39016_001210023 [Pseudomonas aeruginosa 39016] Length = 523 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 103 LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N +F+ + + + DID+FK IND+ GH GD+ + Sbjct: 358 LASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKNINDSHGHLTGDRAL 417 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++ L +GRLGGEEFAA S +A +A LR +E +++ G Sbjct: 418 QRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALDVAERLRAGVEALRVSNPDGEP 477 Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+A R + + +++ RAD ALY AK GRNR Sbjct: 478 LRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNRT 518 >gi|302671039|ref|YP_003830999.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302395512|gb|ADL34417.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 597 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 10/172 (5%) Query: 88 SILKEL-FISYNRISQLSRIDCLSGLLNH-SAFISSLGSYNEKLSIVFFDIDYFKQINDN 145 S+ KEL I+Y QL+RI L N + +S + SI+F DID+FK +ND Sbjct: 431 SMNKELGKIAY--TDQLTRIYNRWELENKVNEILSECNEGGNRASIIFMDIDHFKHVNDT 488 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE- 204 +GH VGD V+ D + GR GGEEF + EA A +LRK I+ Sbjct: 489 YGHDVGDMVLRASVDIIRDNLEAQHVFGRWGGEEFIYVLPDTGIDEAVEFAENLRKQIQD 548 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 N + + HIT+S G+ + + + T + RAD LY AK+ GRNRVV Sbjct: 549 NCFVTVQ-----HITMSFGVTQNIAGDTLETFVKRADDGLYKAKEGGRNRVV 595 >gi|312194408|ref|YP_004014469.1| diguanylate cyclase [Frankia sp. EuI1c] gi|311225744|gb|ADP78599.1| diguanylate cyclase [Frankia sp. EuI1c] Length = 549 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 9/168 (5%) Query: 95 ISYNRISQ--LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145 + Y +SQ L+ D L+GL + L L+++ D+D+FK +ND Sbjct: 355 MRYAEVSQRRLANTDVLTGLCTRRFLETRLALASVRASQPGATLALLLIDVDHFKAVNDR 414 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGHP GD+ +A ++ +L V + V R GGEEFA + + +L LR + Sbjct: 415 FGHPAGDRALAEVARRLREVARSADVVARYGGEEFALLTTYLGQDDLYVLGERLRLAVAA 474 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 S + + G + +T+S G A + +I RAD+ALY AK +GR+ Sbjct: 475 SPVAVDDGIVLPVTVSVGAAATTLPASPAELIDRADRALYAAKSAGRD 522 >gi|237797953|ref|ZP_04586414.1| diguanylate cyclase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020804|gb|EGI00861.1| diguanylate cyclase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 692 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 16/165 (9%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ ++ L + D+D+FK+IND +GH GDKV Sbjct: 530 QKALIDPLTGLANRAAWGERLELEMTQWQQAKNSLLVCILDLDHFKRINDGYGHLAGDKV 589 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINI 210 + +++ L F+ R GGEEF A +G+ L ++LR +E + Sbjct: 590 LKIVANVLKKRLRPNDFMARFGGEEFVMLLPATPIGT----GLTLLDELRTAVEECPFHF 645 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + IT+S G+ E T I RADQALY AK++GRNRV Sbjct: 646 K-GERVTITVSLGVTALRQGERSDTAIKRADQALYKAKENGRNRV 689 >gi|90424331|ref|YP_532701.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gi|90106345|gb|ABD88382.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] Length = 355 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 9/166 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F + + + L+++ DID+FK ND +GH GD+V+ + Sbjct: 181 DPLTGLGNRKHFDRAVDDAVRCASASRQPLALLMIDIDHFKSFNDTYGHLTGDQVLRLVG 240 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217 L + R GGEEFA + ++A +A ++R+ + + ++ S I Sbjct: 241 MSLKQSINGQDIMARYGGEEFAVVLPNTGLRQAIAVAENIRQTVTSKELKKKSTGEILGR 300 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +TIS G++ + ++I RAD LY AK++GRNRV+C D ++ Sbjct: 301 VTISVGVSTLRADDDTDSLIERADSCLYAAKRNGRNRVICEIDRDD 346 >gi|327191230|gb|EGE58273.1| putative sensory box GGDEF family protein [Rhizobium etli CNPAF512] Length = 540 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 10/164 (6%) Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ D L+GL N SA ++ + +S+V FD+D+FK+IND GH GD V+ Sbjct: 352 AQTDLLTGLYNRRGFEVAASALLTQAEHGSRWISVVLFDLDHFKKINDLNGHDAGDAVLR 411 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ F + + R GGEEF A S+ +AA++A +R IE ++I + SG + Sbjct: 412 HVAGVARENFRSFDLLVRHGGEEFLALLPDSTPDDAAVVAERVRLAIEMAEIALPSGERL 471 Query: 217 HITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVC 257 +T S G A R + ++ RAD ALY AK SGRN VV Sbjct: 472 KVTASFGCAGRANDGASRNFEDLVKRADLALYAAKASGRNCVVS 515 >gi|288934559|ref|YP_003438618.1| diguanylate cyclase [Klebsiella variicola At-22] gi|288889268|gb|ADC57586.1| diguanylate cyclase [Klebsiella variicola At-22] Length = 559 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 106/200 (53%), Gaps = 11/200 (5%) Query: 69 LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120 L+L+ + T+ LLL ++ +++ + + + + D L+ LLN A S Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + LS++ D+D+FK+IND +GH GD+V++ ++ L +GR+GGEEF Sbjct: 417 ACQRSGRPLSVIQLDLDHFKRINDRYGHQAGDRVLSTVASTLASTVREGDLLGRVGGEEF 476 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 ++ Q+A +A LR I+ ++ + + ++ ++ S G+ +E + + Sbjct: 477 CVVLPNTTLQDAVAVAERLRLRIQGREVFLHNNVTLRVSASLGVSTSEEQGEYQFEALQS 536 Query: 239 RADQALYVAKKSGRNRVVCF 258 AD+ LY+AK++GRN+ VCF Sbjct: 537 VADRRLYLAKQNGRNQ-VCF 555 >gi|212637691|ref|YP_002314216.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212559175|gb|ACJ31629.1| GGDEF domain protein [Shewanella piezotolerans WP3] Length = 485 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 87/165 (52%), Gaps = 8/165 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFIS----SLGSY---NEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++ D L+G N AF SL + +S++ DID+FK +ND GH +G Sbjct: 319 KLELMASTDKLTGAANRQAFEEYFSRSLARSVLDSTPMSVLLVDIDHFKSVNDQHGHNIG 378 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D VI +S+ L + R GGEEF A +A +RK + +I++ Sbjct: 379 DLVIKTVSNMLKAELREQDLLCRWGGEEFLILLPNIDLSHACEIAELIRKSVAERRIHV- 437 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +G I++TIS+G+AE E ++ RAD ALY AK+ GRNRVV Sbjct: 438 NGCEINVTISSGVAEYRVTEKAEDVVNRADIALYQAKEQGRNRVV 482 >gi|158425346|ref|YP_001526638.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158332235|dbj|BAF89720.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 366 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 23/185 (12%) Query: 93 LFISYNRISQL---------------SRIDCLSGLLNHSAF------ISSLGSYNEKLSI 131 +F +YNR ++L +R D L+GLLN A ++ + L++ Sbjct: 179 MFHAYNRHAELALHNIEAANAALRDATRHDTLTGLLNLPALRDAAAGLAGGHGESAPLAL 238 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 F D+D+FK IND FGH GD V+ ++ + V R+GGEEFA G Sbjct: 239 AFIDVDHFKAINDRFGHAAGDSVLQTVAHAISGAARPQDLVARIGGEEFAIIMPGQDLAH 298 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKS 250 A A+ +R + + + ++ +TIS G+ A + + + ++ RAD A+Y AK Sbjct: 299 ATAAADKVRLAVAERPVTVGK-ETLRVTISVGVTACQPPHQALDWMLQRADMAMYAAKAD 357 Query: 251 GRNRV 255 GRNRV Sbjct: 358 GRNRV 362 >gi|288555553|ref|YP_003427488.1| GGDEFmembrane protein diguanylate cyclase [Bacillus pseudofirmus OF4] gi|288546713|gb|ADC50596.1| GGDEFmembrane protein, putative diguanylate cyclase [Bacillus pseudofirmus OF4] Length = 514 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 24/238 (10%) Query: 33 IFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS---LLLGYISGS 88 +F+SI F+ +A +F I Y L+ + ++ L + T++ + Y Sbjct: 281 MFYSIPFVLLTFLLARMFANRIA----YPLQQLAMQTFELKENNNTVNETKIPTWYFEAE 336 Query: 89 ILKELFISY--NRISQLSR------IDCLSGLLNHSAFISSLGSYNEKL--SIVFFDIDY 138 L F +Y N+ SQL D L+GL N A I +L + E++ SI+ DID+ Sbjct: 337 RLNHTFKAYIQNQESQLQSATKEALTDPLTGLANRRALIKTLQALQEQMHFSIILIDIDH 396 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +ND GH GD+ + F ++ + + GR GGEEF + Q+A +A Sbjct: 397 FKTVNDTLGHKTGDETLVFFAEAMQRITREKDVCGRFGGEEFMIILPETGTQDAIDVAKR 456 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNR 254 L+ ++++ IS + IT SAGI C ++ I + D ALY AK GRN+ Sbjct: 457 LKDFLQDT---ISPAGRV-ITFSAGIGFYCDSYEGEIDQFLNLVDAALYKAKDQGRNQ 510 >gi|225847975|ref|YP_002728138.1| ggdef domain protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225644558|gb|ACN99608.1| ggdef domain protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 409 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 1/128 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +SI+ DID+FK+IND +GH GD+ + + ++ R GGEEF ++ Sbjct: 282 ISIIIADIDFFKKINDTYGHLAGDEALKHFVKIIKQNLRKSDYIFRFGGEEFIILLPNTT 341 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 +EA ++A +R+ +E + + I +G I IT S G+ E EP+ II D+ LY AK Sbjct: 342 LEEAIVIAEKIRETLEKTPL-IYNGKEIKITASFGVKEVHPGEPVDRIIEDVDKKLYKAK 400 Query: 249 KSGRNRVV 256 +SGRN+V+ Sbjct: 401 ESGRNKVI 408 >gi|330951794|gb|EGH52054.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7] Length = 796 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 91/184 (49%), Gaps = 18/184 (9%) Query: 87 GSILKELFIS----YNRISQ----LSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131 GS+L F+S R+ Q LS D L+G N F + S + LS+ Sbjct: 611 GSVLWHGFVSDITDLKRVEQELRALSVTDVLTGAYNRRYFQDRMQSELKRIDRHGGNLSV 670 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK+IND FGH GD+V+ +S+++ + RLGGEEF G+ + Sbjct: 671 IMLDIDHFKRINDRFGHAAGDQVLKAISEKISQRLRSDDVFCRLGGEEFMVICPGTRGAQ 730 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A LA LR + I G +T S GIA E + ++ RAD +Y AK++G Sbjct: 731 AYQLALSLRDELRKQVIE---GVDQVVTGSFGIASWREGEGVDAMLLRADSGVYAAKQAG 787 Query: 252 RNRV 255 R+RV Sbjct: 788 RDRV 791 >gi|258404802|ref|YP_003197544.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692] gi|257797029|gb|ACV67966.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692] Length = 355 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 14/180 (7%) Query: 93 LFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDN 145 L + RI++L R D L+G+ N F+ + +E+ L +V D+D FK +ND Sbjct: 166 LEAANTRINELLRTDPLTGVANRRHVEDFLGQAVARSERHGVPLCVVMCDLDRFKAVNDT 225 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH VGD+ + + L+ T VGR GGEEF ++ + LA+ +R+ + Sbjct: 226 YGHAVGDQALQGFASVLLENCRTEDLVGRFGGEEFLLVLQDTTLEAGGCLADRMRQKVAT 285 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + + ++ G + T S G+A E ++I RAD+A+Y AK GR+RVV +EN T Sbjct: 286 A-VLVAEG--VQQTASFGVAAYRAGEGSESVIQRADKAMYAAKNKGRDRVV----LENET 338 >gi|118475025|ref|YP_892351.1| diguanylate cyclase [Campylobacter fetus subsp. fetus 82-40] gi|118414251|gb|ABK82671.1| diguanylate cyclase [Campylobacter fetus subsp. fetus 82-40] Length = 415 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++L+ D LSG + F + Y ++ ++ FDID FK+IND FGH +GD + Sbjct: 253 MAKLANTDFLSGAYSRRYFYMDMKEYYKNCSDQSFAVAMFDIDDFKKINDKFGHDIGDII 312 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I LS L+ V R GGEEF + +A A +R I +S INI G Sbjct: 313 IQKLSSFLIGWISEGDLVARFGGEEFCVVLKNINFDDAVKKAVSIRAKIASSLINI-KGF 371 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I T+S G+ + I II +AD+ALY AK +G+NRV Sbjct: 372 DIKFTVSIGVTNGDFSKNIDHIISKADEALYNAKIAGKNRV 412 >gi|119946331|ref|YP_944011.1| diguanylate cyclase [Psychromonas ingrahamii 37] gi|119864935|gb|ABM04412.1| diguanylate cyclase [Psychromonas ingrahamii 37] Length = 794 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 74/127 (58%), Gaps = 1/127 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS++ D+D+FK+IND +GH GD ++ F+ + + R GGEEF ++ Sbjct: 666 LSLLLIDVDHFKKINDTYGHLTGDNILKFIVKNIQAILRADDIFVRFGGEEFIILLPKAN 725 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 +E+ ++A LR +E + + +G I IT+S G ++ H E + +I RAD ALY AK Sbjct: 726 LEESVMVAEKLRLSVEQNNYH-KNGMDISITVSIGASQYQHTETLEKLISRADLALYSAK 784 Query: 249 KSGRNRV 255 + GRN+V Sbjct: 785 EKGRNQV 791 >gi|34495695|ref|NP_899910.1| hypothetical protein CV_0240 [Chromobacterium violaceum ATCC 12472] gi|34101550|gb|AAQ57919.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 375 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 19/171 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +NR+ + +D L+G N A ++ +L + E++ +V DID+FK +ND +GHP GD Sbjct: 210 QHNRLEDAANLDPLTGAGNRRALQYWLRTLEASVERVCVVMLDIDHFKSVNDRYGHPAGD 269 Query: 153 KVIAFLSDQLVVVFG---TPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIEN 205 V+ L+ +V+ G M + R GGEEF A + + Q A L R++ Sbjct: 270 AVLQALA--MVLRSGIRDNDMLI-RYGGEEFCLLMPDADIDDAVQAAERLLQAFRQLAP- 325 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + P + T SAG E C ++ + +ADQALY+AK+ GR+RV Sbjct: 326 ----LPGHPELRCTFSAGAHEWDCRRQDFAEAQQKADQALYLAKQDGRDRV 372 >gi|110634093|ref|YP_674301.1| diguanylate cyclase [Mesorhizobium sp. BNC1] gi|110285077|gb|ABG63136.1| diguanylate cyclase [Chelativorans sp. BNC1] Length = 259 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N F +L Y ++ + ++ D+D+FKQ+ND +GH +GD+V+ ++ Sbjct: 103 DSLTGTYNRRYFDDALAEYLLEFGRIHKPVGLIILDLDHFKQVNDAYGHDIGDEVLRRVA 162 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + V RLGGEEFA A EQ A L R+ I +N + + I+ Sbjct: 163 RCLQELTRHDDVVARLGGEEFAILAPNMDEQGLAKLGERARQAISALAVN-AGNIRLRIS 221 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E + RAD+ LY AK+ GRNRV Sbjct: 222 TSVGLAVWDGNESVEEFYRRADRMLYQAKRMGRNRV 257 >gi|158339038|ref|YP_001520215.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158309279|gb|ABW30896.1| diguanylate cyclase [Acaryochloris marina MBIC11017] Length = 420 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 8/178 (4%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 S + +L+ +D L+ + N F L E+ +S++ D+D+FKQ+ND +GH Sbjct: 241 SQTDLERLATLDGLTEVYNRREFNRWLSVEFERSRRDEHPVSLIMVDLDHFKQLNDTYGH 300 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+ + ++ L V R GGEEFA SS +++ +A+ +R+ I I Sbjct: 301 QAGDEALCCVAQLLRKEVRPGDIVSRYGGEEFAIILPKSSVEDSVAVAHRIRREIAIQPI 360 Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 ISS IH+T S G+A + ++ +ADQAL+ AKK GRNRV +++ ++ Sbjct: 361 RISSEDRIHLTASLGLATFPSDVQSEEALLRKADQALFQAKKLGRNRVCLATEVSRSS 418 >gi|126643352|ref|YP_001086336.1| GGDEF domain-containing protein [Acinetobacter baumannii ATCC 17978] Length = 360 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 8/183 (4%) Query: 89 ILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFK 140 IL E+ ++ R I +LS+ID L+ +LN + + L + +E+ +++ DID+FK Sbjct: 174 ILFEILLTQWRQRETYIQRLSQIDPLTNVLNRRSLNTHLEALHEQQFDYAVILLDIDHFK 233 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND +GH GD+V+ ++ L +GR GGEEF + +A +A R Sbjct: 234 KINDIYGHHQGDQVLIEIARCLSENLRNEDIIGRFGGEEFILLLPHTDIIQAEKIAERCR 293 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ I + IH++ S GI+ +I +ADQALY K SGRN+V F Sbjct: 294 QALQELTIFNNQNIQIHVSASFGISSSAFANDPYLVIRQADQALYAVKASGRNQVRTFHQ 353 Query: 261 IEN 263 + Sbjct: 354 LPQ 356 >gi|319787845|ref|YP_004147320.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1] gi|317466357|gb|ADV28089.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1] Length = 438 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 3/131 (2%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DID+FK++ND+ GH GD+V+ L+ L ++ R GGEEF G Sbjct: 309 ALLVLDIDHFKRVNDSCGHDTGDRVLHELAAVLRRQLRPGDWLVRWGGEEFVVLLPGVRT 368 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 + A +A DLR+ +E G + +T+S G+A R E + RAD+ALY AK+ Sbjct: 369 DQVAGIAEDLRRAVERHPFE--HGVPVPVTVSLGVALRGPDEGFEALFKRADEALYEAKR 426 Query: 250 SGRNRVVCFSD 260 +GRNRVV F+D Sbjct: 427 AGRNRVV-FAD 436 >gi|303245323|ref|ZP_07331607.1| diguanylate cyclase with GAF sensor [Desulfovibrio fructosovorans JJ] gi|302493172|gb|EFL53034.1| diguanylate cyclase with GAF sensor [Desulfovibrio fructosovorans JJ] Length = 499 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 18/172 (10%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 +N++ + D L+ + N AF L Y+ +S++ DID+FK IND FGH Sbjct: 312 FNQVKIRADHDGLTRIHNRRAFDERLVEELRRHQRYHHPMSLLMLDIDHFKSINDRFGHL 371 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD V+ + L + F R GGEEF ++E+ + +LA LR +I +++ N Sbjct: 372 VGDHVLREVGRLLSDTLRSTDFTARYGGEEFTVILPQTAEEPSRVLAERLRGVIGDARFN 431 Query: 210 ISSGPSIHITISAGIAERC------HKEPISTIIYRADQALYVAKKSGRNRV 255 G ITIS G+A KE ++ +AD+ALY AKK GRN+V Sbjct: 432 -HDGQEFSITISIGVATMVPGSLAKRKE----LLEKADKALYQAKKLGRNQV 478 >gi|228955663|ref|ZP_04117661.1| GGDEF domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229193667|ref|ZP_04320610.1| GGDEF domain protein [Bacillus cereus ATCC 10876] gi|228589820|gb|EEK47696.1| GGDEF domain protein [Bacillus cereus ATCC 10876] gi|228804032|gb|EEM50653.1| GGDEF domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 352 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 18/208 (8%) Query: 65 LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118 L++ + +V + + S++ GYI+ +L+ ELF ++ Q + ID L+GL N F Sbjct: 150 LIKEIHIVGLYLISSIITGYITFISANYVLQSNELF---QKMKQYATIDALTGLGNVRQF 206 Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 IS+ N+ ++ DID+FK +ND +GHP GD+V+ + L P Sbjct: 207 DLEMNRHISNKNMKNDSFCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDL 266 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 R GGEEFA + +R +E+ + I IT+S G++E ++E Sbjct: 267 AFRKGGEEFALLIPNKGLAYGILTGEQIRTAVESHSFQLLDETKIKITVSVGVSE--YEE 324 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259 I AD ALY +K++GRN+V S Sbjct: 325 SPEQFIQAADDALYYSKRNGRNKVSSVS 352 >gi|324113381|gb|EGC07356.1| EAL domain-containing protein [Escherichia fergusonii B253] Length = 720 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 10/176 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGD 152 + +++RID LS L N A I +L ++ S+VF D+D FK IND +GH VGD Sbjct: 294 QKARRIARIDWLSRLPNRRALIETLEDLRKRGECDLKSVVFIDLDGFKDINDIYGHYVGD 353 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211 ++I L+ L V+ + R+GG+EFA G SEQ A A+ + K + N+ + + Sbjct: 354 QLIISLAQTLQVLTPKDGMLARMGGDEFALMIGGKKSEQIATEFADKVMKYL-NNPVQLG 412 Query: 212 SGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIENNTC 266 SIHI+ S GIA E S+ ++ RAD A+Y AK +G+ R+ + D E N+ Sbjct: 413 E-RSIHISASIGIASGSLVECTSSELFRRADIAMYHAKATGKGRITHY-DAELNSA 466 >gi|78777526|ref|YP_393841.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78498066|gb|ABB44606.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] Length = 564 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 87/169 (51%), Gaps = 10/169 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D ++ L N F S EK LSI+ DID FK +ND +GH GD+V+ Sbjct: 397 LASTDSMTKLYNRRYFTEISAKVLHLSKREKNNLSILMIDIDRFKVVNDTYGHQFGDEVL 456 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 LS LV V R GGEEF +S ++A +A +R ++E+ + + Sbjct: 457 IALSRLLVEHQRKSDIVCRYGGEEFVILLPNTSLKDATNIAQKIRILVESLTMEAPTNKE 516 Query: 216 IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 TIS G+A+ H++ I + RAD ALY AK SGRNR VC +I+ Sbjct: 517 FKFTISIGVAQIDVEHEDDIKFALKRADDALYRAKNSGRNR-VCAEEIK 564 >gi|28900594|ref|NP_800249.1| GGDEF domain-containing protein [Vibrio parahaemolyticus RIMD 2210633] gi|260365474|ref|ZP_05778011.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|260877539|ref|ZP_05889894.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|260897520|ref|ZP_05906016.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus Peru-466] gi|28808974|dbj|BAC62082.1| putative GGDEF domain containing protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087082|gb|EFO36777.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus Peru-466] gi|308090571|gb|EFO40266.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|308114277|gb|EFO51817.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] Length = 456 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 10/148 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GLLN F S + +L S++ D D K+IND +GH VGD+VI ++D Sbjct: 308 DDLTGLLNRRVFKDS--EFKRRLKTAPYSVIAIDGDRIKRINDRYGHHVGDEVIEIIADA 365 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + VF T ++ R GG+EF A G S ++++LA LR ++++++ I +++S Sbjct: 366 MRKVFRTSDYLVRTGGDEFIAILPGCSISQSSMLAKKLRSFVKDNRLKT---LDIEVSVS 422 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKK 249 G+A E + +I RAD+ LY KK Sbjct: 423 TGVAANESHESLQDVIVRADEDLYEMKK 450 >gi|332307994|ref|YP_004435845.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175323|gb|AEE24577.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 339 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 101/201 (50%), Gaps = 10/201 (4%) Query: 66 VENLSLVIISITISLLLGYISGSILKELF-----ISYNRISQLSRIDCLSGLLNHSAFIS 120 +EN +ISI I+ +L YI ++ + + ++ L+ D L+ N A Sbjct: 136 IENTD-AVISILINFVLAYIVIWVISHSYEMSRKSNEKKLVNLALRDALTQTYNRLALQE 194 Query: 121 SLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 Y +K +S+ DID FKQIND FGH VGD V+ LS + G V R+GGE Sbjct: 195 HFSQYLDKDDISVALLDIDDFKQINDRFGHDVGDCVLLQLSKLVRKTVGDDQ-VYRIGGE 253 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EF + + LR I+++Q + +I+ITIS G++E P+S + Sbjct: 254 EFVVLFKDCTMDSLVSIIESLRHTIQHTQFG-NDTLTINITISIGVSEVQDGTPLSQHLK 312 Query: 239 RADQALYVAKKSGRNRVVCFS 259 +AD+ LY AK+ G+N+ V S Sbjct: 313 QADERLYCAKRKGKNQAVFIS 333 >gi|325497204|gb|EGC95063.1| Hypothetical protein; GGDEF diguanylate cyclase (GGDEF) domain, membrane protein [Escherichia fergusonii ECD227] Length = 720 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 10/176 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGD 152 + +++RID LS L N A I +L ++ S+VF D+D FK IND +GH VGD Sbjct: 294 QKARRIARIDWLSRLPNRRALIETLEDLRKRGECDLKSVVFIDLDGFKDINDIYGHYVGD 353 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211 ++I L+ L V+ + R+GG+EFA G SEQ A A+ + K + N+ + + Sbjct: 354 QLIISLAQTLQVLTPKDGMLARMGGDEFALMIGGKKSEQIATEFADKVMKYL-NNPVQLG 412 Query: 212 SGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIENNTC 266 SIHI+ S GIA E S+ ++ RAD A+Y AK +G+ R+ + D E N+ Sbjct: 413 E-RSIHISASIGIASGSLVECTSSELFRRADIAMYHAKATGKGRITHY-DAELNSA 466 >gi|304411474|ref|ZP_07393087.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella baltica OS183] gi|307306750|ref|ZP_07586492.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella baltica BA175] gi|304350001|gb|EFM14406.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella baltica OS183] gi|306910718|gb|EFN41147.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella baltica BA175] Length = 628 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 11/183 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 L+EL ++++ S ID L+G+ N SAF L ++++ DID FK I Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD+ + ++ L P V R GGEEFA ++E A +A +R Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560 Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + G I +TIS G++ + + + ++ +AD+ALY AK GRN+V FS Sbjct: 561 AVSSLHFEW-GGEVIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLFS 619 Query: 260 DIE 262 ++ Sbjct: 620 SVQ 622 >gi|251788391|ref|YP_003003112.1| PAS/PAC sensor diguanylate cyclase [Dickeya zeae Ech1591] gi|247537012|gb|ACT05633.1| diguanylate cyclase with PAS/PAC sensor [Dickeya zeae Ech1591] Length = 463 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 13/182 (7%) Query: 87 GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 GS+L EL S + L++ D L+G+ N F S + LS++ DID Sbjct: 271 GSMLDVTELKQSETLLQVLAQTDSLTGIANRRHFDERYQHLWRQQESMQKPLSLLMIDID 330 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 FK+ ND++GH GD I + + L + +GR GGEEF + ++A ILA Sbjct: 331 RFKRFNDSYGHSKGDACIKSVVETLAAQLPSSECLLGRYGGEEFIMVLPETDHRQALILA 390 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY---RADQALYVAKKSGRN 253 R+ +E+ +I + P +T+S G+A E S++ ADQALY AK GRN Sbjct: 391 ERCRQAVESMEIPHTKSPQGVVTVSIGVAAAKPGETGSSMTQLSNDADQALYRAKHQGRN 450 Query: 254 RV 255 RV Sbjct: 451 RV 452 >gi|324114607|gb|EGC08575.1| diguanylate cyclase domain-containing protein [Escherichia fergusonii B253] Length = 399 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 23/201 (11%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122 LSL +I + L+ ++S +L R+ +S D ++G+ N + + L Sbjct: 204 LSLPVI-VFYPLIFAWVSYQTATKLAEHKRRLQVMSARDGMTGVYNRRHWETLLCIEFDH 262 Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 Y +++ DID+FK IND +GH VGD+ I L+ QL + + +GR GG+EFA Sbjct: 263 CRRYQRDATLLIIDIDHFKSINDTWGHDVGDEAILALTRQLQMTLRSSDVIGRFGGDEFA 322 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII--YR 239 G+ + A + + + + S + +S P + + IS G+A P++ I YR Sbjct: 323 VIMCGTPAENAIAAMSRVHERL--SHLRLSCAPQVILRISVGVA------PLTPQISHYR 374 Query: 240 -----ADQALYVAKKSGRNRV 255 AD ALY AK +GRNR Sbjct: 375 EWLKSADMALYKAKSAGRNRT 395 >gi|261251213|ref|ZP_05943787.1| GGDEF family protein [Vibrio orientalis CIP 102891] gi|260938086|gb|EEX94074.1| GGDEF family protein [Vibrio orientalis CIP 102891] Length = 411 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 21/174 (12%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +L+ D L+ + A S L + +I DID+FK ND +GH GD+V+ ++ + Sbjct: 236 ELAFTDSLTEIPGRLALESDLKHLGRRYTIAMLDIDHFKSFNDTYGHDTGDEVLKLVASK 295 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP---- 214 +++V G V R GGEEF G EA LR IEN + N + P Sbjct: 296 MLLVGGRAK-VYRYGGEEFTVLFKGKYADEAQDHLELLRTSIENYDMVLRNQDARPKDDK 354 Query: 215 -------------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++++TIS G+A+ ++ ++ AD ALY AKK+GRNRV Sbjct: 355 QGCKKRGVKKASDTVNVTISIGVADSSETSKVAEVMKSADNALYKAKKAGRNRV 408 >gi|254520962|ref|ZP_05133017.1| ggdef domain protein [Stenotrophomonas sp. SKA14] gi|219718553|gb|EED37078.1| ggdef domain protein [Stenotrophomonas sp. SKA14] Length = 400 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 90/162 (55%), Gaps = 9/162 (5%) Query: 104 SRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GLLN SA ++ + L+++ D+D+FKQIND +GH GD+V+ Sbjct: 222 ARTDGLTGLLNRSAVLADGQAQLQRVRQQGHPLALLLVDVDHFKQINDRWGHLAGDEVLR 281 Query: 157 FLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 S L G +GR GGEEF GS+ +A +LA +R ++ + +GP Sbjct: 282 HFSAVLQHCTQGKTHLLGRYGGEEFVLVLAGSTSSDAVMLAAVIRTRLQRHPAVLVTGP- 340 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +T S G+A + +ST++ AD ALY AK +GR+++ C Sbjct: 341 VAVTASVGLAMDEGQGDLSTLLAAADAALYQAKAAGRDQLAC 382 >gi|313683101|ref|YP_004060839.1| response regulator receiver modulated diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313155961|gb|ADR34639.1| response regulator receiver modulated diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 412 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+ + D L+GL N F +++ Y E+ + DID+FK+IND +GH VGD Sbjct: 249 ITNYASRDFLTGLYNRRYFFNTIEPYFSNAVDSEEEFVVAMVDIDHFKKINDTYGHDVGD 308 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 K I LS+ L V R GGEEF ++ + A + +R+ + S + I++ Sbjct: 309 KAIIHLSEILRSGVQHQDVVARFGGEEFCIVLKNTTRENAIGVLERIRQQVSLSPLMIAN 368 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + TIS G A H++ ++ I AD LY AK +GRN+VV Sbjct: 369 QSEVSFTISIGAALE-HEDTLTDTINEADAKLYQAKSTGRNKVV 411 >gi|148656630|ref|YP_001276835.1| diguanylate cyclase [Roseiflexus sp. RS-1] gi|148568740|gb|ABQ90885.1| diguanylate cyclase [Roseiflexus sp. RS-1] Length = 387 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 S ++ L Y ++ L+ D L+ L N I+ Y ++ + FD+D+FK Sbjct: 205 SHIERLHTEYEVMANLAYTDTLTSLPNRRRLYEDVYRLIALAERYGQEFCVCLFDLDHFK 264 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ++ND GH VGD+V+ ++ + GR GGEEF + ND + Sbjct: 265 RLNDTHGHLVGDQVLQEVAQVARLHLRAADLFGRWGGEEFVVLLPQTR-------LNDAQ 317 Query: 201 KIIENSQINISS--GPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +E ++ + + P++H IT S GIA + ++++RADQALY+AK +GRNR+V Sbjct: 318 TALERVRLALHTIALPNVHAITASFGIAAYLPGDTSESLLHRADQALYLAKATGRNRIVL 377 Query: 258 FSD 260 SD Sbjct: 378 DSD 380 >gi|330501719|ref|YP_004378588.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328916005|gb|AEB56836.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 537 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 10/161 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + L+ DID+FK++ND +GHP+GD+VI L+ Sbjct: 377 DSLTGLYNHTHTLQLLDDACYRARREQQPLAFAMLDIDHFKKVNDTYGHPMGDRVIKSLA 436 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L +GR GGEEFA + EQ A + ++R+ ++I+ + P + Sbjct: 437 LFLKQRLRKTDHIGRYGGEEFAVVLPDTDEQSALKVLEEIRQRF--AEIHYPAQPQDLSC 494 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 T S GIA + + RAD+ALY AK GRNRV +S Sbjct: 495 TFSCGIAMLQPGLDGNALSKRADEALYKAKHGGRNRVELYS 535 >gi|310644541|ref|YP_003949300.1| diguanylate cyclase (ggdef) domain protein [Paenibacillus polymyxa SC2] gi|309249492|gb|ADO59059.1| Diguanylate cyclase (GGDEF) domain protein [Paenibacillus polymyxa SC2] Length = 358 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 11/198 (5%) Query: 68 NLSLVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118 NL +I+ T+ +L G Y S +K+ + + + + + D L+GL + AF Sbjct: 157 NLETIIMITTVKILGGLFTYFMMSHIKKTERAIHLLEEAANRDHLTGLYSPRAFDALFEE 216 Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + + + +V DID+FK+IND +GH GD V++ L L T + R GG Sbjct: 217 VLHASKTTKKPFGLVMLDIDHFKKINDTYGHLNGDAVLSQLGILLNRESTTRAYPSRKGG 276 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 EEFA ++AA A +RK +EN ++ G I +T+S G A ++ Sbjct: 277 EEFAILLGDCDTEKAASFAEKIRKAVENECFLLNDGTIISLTVSIG-AGSSPAIVSRRLL 335 Query: 238 YRADQALYVAKKSGRNRV 255 +AD+ALY AK+SGRNRV Sbjct: 336 EKADEALYEAKRSGRNRV 353 >gi|126651261|ref|ZP_01723471.1| response regulator receiver domain protein (CheY-like) [Bacillus sp. B14905] gi|126592099|gb|EAZ86165.1| response regulator receiver domain protein (CheY-like) [Bacillus sp. B14905] Length = 578 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 118/257 (45%), Gaps = 40/257 (15%) Query: 30 YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG------ 83 Y+ I +++ ++++I A L ++ + PF+ + V + + SI +SL LG Sbjct: 313 YYIIGWTVLLSSIIVQA---LAFLSIIPFHPRVFEEVPAIGAIFESIFLSLALGDKINII 369 Query: 84 ----------------YISGSILKELFISYNRISQLSRIDCLSGLLNH--------SAFI 119 Y KEL + + L+ D L+ + N F Sbjct: 370 KKEHQLMQETLNETLEYKVQERTKELEAAKLELEALANTDRLTQIPNRVRLDDVLEKEFK 429 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 + G+ LSI+ DID+FK +ND FGH VGD V+ +D L VGR GGEE Sbjct: 430 QATGN-GTPLSIILLDIDHFKAVNDEFGHQVGDLVLRHAADMLKNHVRVEDIVGRWGGEE 488 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA-GIAERCHKEPISTIIY 238 F + ++A L+ +LR+ Q+ S P +H S+ G+ + I +++ Sbjct: 489 FLVVCPNTRLKDAVQLSENLRQ-----QLEQHSFPVVHQKTSSFGVTSFVLGDTIHSLLS 543 Query: 239 RADQALYVAKKSGRNRV 255 R D+ALY AK+ GRNRV Sbjct: 544 RCDKALYQAKEYGRNRV 560 >gi|293605900|ref|ZP_06688270.1| response regulator [Achromobacter piechaudii ATCC 43553] gi|292815687|gb|EFF74798.1| response regulator [Achromobacter piechaudii ATCC 43553] Length = 341 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 11/177 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 ++L S + +L+ D L+GL N F L + ++S++ D+D+FK N Sbjct: 157 QQLLESNMELRRLTNSDGLTGLGNRRYFDEYLNAEWQRARRDQREISMLMIDVDHFKAYN 216 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD+ + +++ + R GGEEFA GS A + A LR+ Sbjct: 217 DTYGHIAGDEALKRVANTIFASCDRSTDLAARFGGEEFALVLPGSPAGSARLAAEKLRRA 276 Query: 203 IENSQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +E QI + SGP + ++I A +P + +I AD+ LY AK++GRNRVV Sbjct: 277 VEAMQIPQKDTGSGPWLTVSIGTATAIPVPDQPCTDLIQVADRGLYQAKRNGRNRVV 333 >gi|157963523|ref|YP_001503557.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157848523|gb|ABV89022.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 320 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 101/216 (46%), Gaps = 23/216 (10%) Query: 57 PFYGLEYILVENLSLVIIS------ITISLLLGYISGSILKELFI--SYNRISQLSRIDC 108 P G + +N++L+ +S IS+++ ++ + +L + + R LS+ID Sbjct: 103 PITGRADFMYQNVTLLPLSSLTGEVTHISMIVYDVTDVAINKLQLKSANERFEHLSQIDG 162 Query: 109 LSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L N + L Y S+V DID+FK IND +GH GDKV+ +S Sbjct: 163 LTQLFNRRHWEQCLQKEFDRHARYGSDTSLVMLDIDHFKSINDTYGHQAGDKVLQNVSHL 222 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + GR GGEEF + A A LRK +E +I I IT+S Sbjct: 223 IKKSLRETDCAGRYGGEEFGVVLANTPAANARFFAERLRKKLEQLEICYEEH-IIKITVS 281 Query: 222 AGIAERCHKEP----ISTIIYRADQALYVAKKSGRN 253 GI C +P T + ADQALY AK++GRN Sbjct: 282 LGI---CEIKPEIMDSDTWLSLADQALYQAKEAGRN 314 >gi|219848730|ref|YP_002463163.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus aggregans DSM 9485] gi|219542989|gb|ACL24727.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus aggregans DSM 9485] Length = 941 Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NHS ++ + LS+V DID+FKQ+ND GH +GD+V+ L+ Sbjct: 383 DGLTGLFNHSVSQDLLTREVARARRNGQPLSVVLIDIDHFKQVNDRHGHQMGDRVLKSLA 442 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L T +GR GGEEF + AA++ + LR+ + + + G + +T Sbjct: 443 RLLRQRLRTTDVIGRYGGEEFLVVMPDTRAASAAMVIDSLRERFAHIE-HQREGEPLRVT 501 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SAG+AE +++ +AD ALY AK GRN VV Sbjct: 502 FSAGVAEWSLGMDTGSLLEKADAALYQAKNQGRNLVV 538 >gi|88797784|ref|ZP_01113372.1| hypothetical protein MED297_11550 [Reinekea sp. MED297] gi|88779461|gb|EAR10648.1| hypothetical protein MED297_11550 [Reinekea sp. MED297] Length = 354 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N + L E L +V+ DID+FK+IND +GH +GD+V+ ++ Sbjct: 190 DALTGVWNRKGILHILEQKLNVSERTGETLGVVYADIDHFKRINDTYGHAIGDEVLVQVA 249 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D++ ++ +GR+GGEEF L + A +A +R+ IE + +G + ++ Sbjct: 250 DRIRLMLRNYDALGRIGGEEFLVLVLDPAPNAAQRIAERIRQAIEQRPVATRAG-DLMVS 308 Query: 220 ISAGIAERCHKEPIST---IIYRADQALYVAKKSGRN 253 +S G+A R ++ +T ++ AD+ LY AK +GRN Sbjct: 309 MSLGVAVRHDEQQQATSTALMAEADRCLYQAKNAGRN 345 >gi|77458276|ref|YP_347781.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gi|77382279|gb|ABA73792.1| putative transmembrane sensory box GGDEF domain protein [Pseudomonas fluorescens Pf0-1] Length = 357 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 91/191 (47%), Gaps = 12/191 (6%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SI 131 L LG+I L + + LSR D L+GLLNH A+ L E+ +I Sbjct: 159 PLALGWICFRQAYTLGLHKRELLALSRTDSLTGLLNHGAWKDQLEIEFERCKRQQTGAAI 218 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID+FK IND +GH GD V+ LS L GR GG+EF Sbjct: 219 ALIDIDHFKAINDTYGHVAGDIVLRQLSKMLKQNLRMADVAGRYGGDEFCVILPDLPLFN 278 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKK 249 AA LR+ S + P++ +++S G+A + H + + + ADQALY AK Sbjct: 279 AAQAMEALRERF--SFLVYEQNPALKVSLSIGLAALDPAHGD-ATRWLDDADQALYEAKA 335 Query: 250 SGRNRVVCFSD 260 GRNRV+C SD Sbjct: 336 GGRNRVICCSD 346 >gi|113971105|ref|YP_734898.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113885789|gb|ABI39841.1| diguanylate cyclase [Shewanella sp. MR-4] Length = 575 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 11/175 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146 + R +++R+D L+G+LN A F+ + + ++ FD+DYFK+IND++ Sbjct: 385 LQKRRFMRMARMDALTGVLNRGAGQDLGENLFVQAAARGGD-FCVILFDLDYFKRINDSY 443 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD + + + L R+GGEEFA ++E + +A R IE Sbjct: 444 GHGTGDWALKKVVEALKPHVRNGDVFARIGGEEFALFLPYANESKGMEVAEQCRSRIEAI 503 Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ SG IT S G++ ++ + +++RAD ALY AK +GRN V C+ D Sbjct: 504 DTHL-SGHKFTITASFGVSGMTKEDLSLDPLLHRADMALYAAKSNGRNSVFCYED 557 >gi|148556451|ref|YP_001264033.1| diguanylate cyclase [Sphingomonas wittichii RW1] gi|148501641|gb|ABQ69895.1| diguanylate cyclase [Sphingomonas wittichii RW1] Length = 408 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 15/170 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+GL N F+ + S S+ D+D FK IND +GH Sbjct: 225 TRLRIMADTDELTGLANRRCFLERARTAFGTARSRERPFSLCMIDVDNFKAINDGWGHDC 284 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ + F VGR GGEEF AA G+ +A +A LR+ I ++ Sbjct: 285 GDAVLREVAAACLRTFREGDAVGRFGGEEFVAALPGADMADARRIAERLRETIAGLRLEA 344 Query: 211 SSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVV 256 + +T++ G+AE EP+ T + RAD ALY K+SGRN V+ Sbjct: 345 PLA-DLRVTVTIGLAE---VEPLETSLAPALKRADAALYQGKRSGRNMVL 390 >gi|218548797|ref|YP_002382588.1| hypothetical protein EFER_1436 [Escherichia fergusonii ATCC 35469] gi|218356338|emb|CAQ88956.1| Hypothetical protein; putative GGDEF diguanylate cyclase (GGDEF) domain, putative exported membrane protein [Escherichia fergusonii ATCC 35469] Length = 722 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 10/176 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGD 152 + +++RID LS L N A I +L ++ S+VF D+D FK IND +GH VGD Sbjct: 296 QKARRIARIDWLSRLPNRRALIETLEDLRKRGECDLKSVVFIDLDGFKDINDIYGHYVGD 355 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211 ++I L+ L V+ + R+GG+EFA G SEQ A A+ + K + N+ + + Sbjct: 356 QLIISLAQTLQVLTPKDGMLARMGGDEFALMIGGKKSEQIATEFADKVMKYL-NNPVQLG 414 Query: 212 SGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIENNTC 266 SIHI+ S GIA E S+ ++ RAD A+Y AK +G+ R+ + D E N+ Sbjct: 415 E-RSIHISASIGIASGSLVECTSSELFRRADIAMYHAKATGKGRITHY-DAELNSA 468 >gi|264678470|ref|YP_003278377.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262208983|gb|ACY33081.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 184 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 8/162 (4%) Query: 105 RIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 + D L+ L N A + L + + S+V DID+FK++ND FGH GD V+ L+ Q Sbjct: 20 KTDPLTKLGNRRSLEAALQKLEASSHIFSVVSIDIDHFKKVNDTFGHDAGDIVLRDLAKQ 79 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + V R+GGEEF +SE A +A LRK +E + + G HITIS Sbjct: 80 MKSVSRADDLPCRVGGEEFLIVLPRTSETTAVQVAERLRKQVEAA---VFEGVG-HITIS 135 Query: 222 AGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 G+A + I T+I AD+ LY AK+ GRNRV +S E Sbjct: 136 LGVASWPNSSSDIPTVIKYADEMLYKAKREGRNRVAVYSQSE 177 >gi|221210903|ref|ZP_03583883.1| diguanylate cyclase [Burkholderia multivorans CGD1] gi|221169859|gb|EEE02326.1| diguanylate cyclase [Burkholderia multivorans CGD1] Length = 508 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 9/170 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147 ++ ++ +L+R D L+GL N AF ++L + LS++F D+D+FK ND +G Sbjct: 329 VAEAKLYRLARTDSLTGLDNRGAFDAALAQEARRAARSGRPLSVLFVDVDHFKAFNDYYG 388 Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 H GD V+ ++ + R GGEEF + Q AA +A +R+ I Sbjct: 389 HLAGDDVLRRVAQCASGCLRRATDHIARYGGEEFVVTLPDTDAQGAATVAEGIRRAIAAL 448 Query: 207 QINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 I P H+T S G A H + +T++ AD ALY AK GRNRV Sbjct: 449 GIEHVKSPYGHVTASIGTATDAHGRMDAATLLQLADDALYRAKYGGRNRV 498 >gi|110835527|ref|YP_694386.1| GAF/PAS/GGDEF domain-containing protein [Alcanivorax borkumensis SK2] gi|110648638|emb|CAL18114.1| GAF/PAS/GGDEF domain protein [Alcanivorax borkumensis SK2] Length = 487 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 22/197 (11%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124 + +T L L G L+EL ++ ++R D L+GL N + L Sbjct: 295 ITAQVTAELTLREKQGE-LEEL---NQELASMARTDPLTGLYNRLVLMEGLRQEFSRCER 350 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 +E +S++F D+D+FKQ ND++GH GD + +++ L V + R GGEEF A Sbjct: 351 RSEPMSVIFMDVDHFKQYNDSYGHVEGDAALQAVAEALRPVIRDTDVLARYGGEEFVALL 410 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIY 238 ++ Q+A +A R+ + ++I+ S P +++S G+A E + +++ Sbjct: 411 PTANSQDAERVAERCRRAV--AEISSLSRP---VSLSVGVATLRFGDEADETKSPESLLS 465 Query: 239 RADQALYVAKKSGRNRV 255 AD+ALYVAK +GRNRV Sbjct: 466 AADRALYVAKGAGRNRV 482 >gi|313682761|ref|YP_004060499.1| response regulator receiver modulated diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313155621|gb|ADR34299.1| response regulator receiver modulated diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 428 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 90/185 (48%), Gaps = 13/185 (7%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134 +GY S + + R+ ++S D L+ L N SS Y+ +++ Sbjct: 249 IGYTS---ISQNITDKKRVEEISVTDQLTQLHNRMYLESSFAKEIKRAKRYHHLFAVIMI 305 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK++ND +GH VGD V+ +S L +GR GGEEF +S EA Sbjct: 306 DIDHFKEVNDTYGHDVGDNVLVSISQILSENIRETDILGRWGGEEFLIICPHTSSLEAYN 365 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 LA LR IE I++ S +S + E ++ +D+ALYVAKKSGRNR Sbjct: 366 LAEKLRVSIETHPIDVIGYKSCSFGVSVF---DLNDETFKEVLKHSDEALYVAKKSGRNR 422 Query: 255 VVCFS 259 VV + Sbjct: 423 VVEYK 427 >gi|303239391|ref|ZP_07325919.1| diguanylate cyclase with TPR repeats [Acetivibrio cellulolyticus CD2] gi|302593177|gb|EFL62897.1| diguanylate cyclase with TPR repeats [Acetivibrio cellulolyticus CD2] Length = 1820 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 11/165 (6%) Query: 103 LSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVI 155 +S ID L+G+ F S + +++EK LS++ DID FK INDNFGH GD+++ Sbjct: 1476 ISSIDKLTGVYTRKYFESVIDQIINNAHSEKSPLSLIMIDIDKFKSINDNFGHQKGDEIL 1535 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + L+ + R GGEEF +S EA +A LR IE ++ G Sbjct: 1536 SNVGRILMENIRSADVCCRYGGEEFVIILPDTSINEAEAVAEKLRSAIEKERL---MGQG 1592 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++T+S G++ H E +I +ADQALY AK+SGRNR ++ Sbjct: 1593 NNLTVSLGVSSYPKHGEWRDELIGKADQALYYAKESGRNRSCVWN 1637 >gi|159184564|ref|NP_354013.2| hypothetical protein Atu0989 [Agrobacterium tumefaciens str. C58] gi|159139868|gb|AAK86798.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 301 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 13/220 (5%) Query: 54 GLTPFYGLEYILVENLSLVIISITI--SLLLGYIS-----GSILKELFISYNRISQLSRI 106 G PF +E L + ++ T+ +L I+ G L++L +R + + Sbjct: 82 GKLPFRTIETSLKDGRWMLTTETTLPGGWMLCVITDVSELGIELRDLRQERDRALKSALS 141 Query: 107 DCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL N + +L + + L+++ DID+FK +ND FGH GD V+ + + Sbjct: 142 DELTGLGNRRYAMDTLNHLLGPNKAQALAVIIMDIDHFKSVNDRFGHAYGDLVLKDFAAR 201 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L G +GR+GGEEF GS A L L + + + P + S Sbjct: 202 LSATAGRDDLLGRIGGEEFLLVLSGSRMHSADSLMRQLLSSLAQAS-PLGDRPDFRYSCS 260 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 AGIA E S ++ AD ALY AK +GRNR V ++ + Sbjct: 261 AGIAYANPGESASEVLRHADTALYEAKNTGRNRYVIYATV 300 >gi|117924699|ref|YP_865316.1| response regulator receiver modulated diguanylate cyclase [Magnetococcus sp. MC-1] gi|117608455|gb|ABK43910.1| response regulator receiver modulated diguanylate cyclase [Magnetococcus sp. MC-1] Length = 476 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 11/164 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 ++ +++ D L+G+ N ++ L + ++ SI+ FDID+FKQ+NDNFGH VG Sbjct: 283 KLEEIAFTDGLTGVANRASLQQILNAEMQRSRRHGGTFSIILFDIDHFKQVNDNFGHQVG 342 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ L+ + + R GGEEF + + A LA LR++IE +I+ Sbjct: 343 DDVLRLLASTIADNLRATDTIARWGGEEFMVVCPEINIEAAHRLAEKLRQLIE----HIT 398 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IT S G+ + + ++ RAD ALY AK+ GRNRV Sbjct: 399 FPEVKQITSSFGVTQFQKNDQSRSLTQRADCALYRAKEGGRNRV 442 >gi|300690006|ref|YP_003751001.1| diguanylate kinase, GGDEF domain [Ralstonia solanacearum PSI07] gi|299077066|emb|CBJ49684.1| putative Diguanylate kinase, GGDEF domain [Ralstonia solanacearum PSI07] Length = 467 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 8/176 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L+EL + ++ L+ D L+G N FI + + S++ D+D+FK I Sbjct: 291 LQELQRTNQKLEHLAATDPLTGAANRRQFIERVETEIARAKRGGAPFSLLALDLDHFKVI 350 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND++GH VGD+V+ + R+GGEEF ++ A +A +R+ Sbjct: 351 NDSYGHQVGDEVLKGFVKKCFDAIRPYDGFARVGGEEFMVLLPQAALDAAHSVAERVRRA 410 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I S I G S+ +T+S GI++ H E + +I+ AD+ LY AK GRNRV+ Sbjct: 411 IAESAFEIGVGRSVGLTVSVGISQFGHDGESLDSILRVADERLYRAKHEGRNRVIA 466 >gi|225871899|ref|YP_002753353.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196] gi|225793514|gb|ACO33604.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196] Length = 641 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/164 (39%), Positives = 86/164 (52%), Gaps = 15/164 (9%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD---KVIA 156 D L+GL NH + L E+ LS++ DID+FK+IND GHP+GD K I+ Sbjct: 469 DGLTGLWNHRIMMERLRGEVERSRRDGTPLSVILADIDHFKRINDEHGHPMGDLVLKEIS 528 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L ++LV + +VGR GGEEF GS A A LR+ +E ++I P + Sbjct: 529 VLLERLVRPYD---WVGRYGGEEFLIILPGSEFDVACSRAEQLRRAVEMAEIGNGERP-L 584 Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 +T S G+A E + + R D ALY AK SGRN VV S Sbjct: 585 RVTSSFGVASGGSMEHGAEEMIRVVDAALYRAKASGRNCVVATS 628 >gi|254457265|ref|ZP_05070693.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207086057|gb|EDZ63341.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 444 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 84/165 (50%), Gaps = 12/165 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPV 150 + +LS ID L+G+ N S F I + Y + S+VF DID+FK IND +GH Sbjct: 281 KYEELSTIDNLTGIFNRSKFEMELRNEIKRIERYTTDTFSLVFLDIDHFKNINDKYGHLE 340 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + ++ + + + R GGEEF + A + RKIIE Q + Sbjct: 341 GDNTLRDMARLIEKNLRSTDTLARWGGEEFVIVMPLTPLALAKEVTEKFRKIIEQEQFYV 400 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++T S GI+E + +II RADQA+Y AK +GRNRV Sbjct: 401 VG----NVTCSFGISEFKKGDNAQSIILRADQAMYKAKANGRNRV 441 >gi|251795051|ref|YP_003009782.1| diguanylate cyclase [Paenibacillus sp. JDR-2] gi|247542677|gb|ACS99695.1| diguanylate cyclase [Paenibacillus sp. JDR-2] Length = 559 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 92/182 (50%), Gaps = 17/182 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 ELF + ++ ++ D L+G N + L + SI FDID FK IND Sbjct: 373 ELFQANKKLEHMAITDGLTGCYNRRYLLQQLEHEIAVNVQFGIPFSIFLFDIDLFKAIND 432 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH VGD+VI + + + + R GGEEF ++ +A I+A+ +++ +E Sbjct: 433 QYGHLVGDEVICSTVEAVKNTLRSADILARYGGEEFTVYLPHTTRDQADIIADMVKESVE 492 Query: 205 NSQINISSG-PSIHITISAGIA------ERCHKEP---ISTIIYRADQALYVAKKSGRNR 254 + + G S+ +TIS G+ ER +P + ++ +AD ALY AK +GRNR Sbjct: 493 QNVVRTGIGSQSVRVTISMGVVSVEQFDERALDDPKAFLRELLAQADAALYEAKYNGRNR 552 Query: 255 VV 256 +V Sbjct: 553 IV 554 >gi|158425004|ref|YP_001526296.1| hypothetical protein AZC_3380 [Azorhizobium caulinodans ORS 571] gi|158331893|dbj|BAF89378.1| hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 285 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 11/162 (6%) Query: 104 SRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 SR D L+ L N + F + LG ++ FDID+FK+IND +GHP GD V+ Sbjct: 113 SRRDVLTQLPNRAGFDEQAMRILGDCQRAGLPAAVALFDIDHFKKINDGWGHPAGDAVLK 172 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+D V + R GGEEF G S + A + +R+ I + S S Sbjct: 173 NLADAAQDVTRSTDAFARFGGEEFVMILKGVSAEAAFVHVERIRRAISRDVPHPSG--SG 230 Query: 217 HITISAGIAE-RCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 IT+SAG+A+ R + + ++ I RAD+ALY AK +GR+R + Sbjct: 231 RITVSAGLADVRTYDQAGLTAAISRADEALYAAKAAGRDRTM 272 >gi|261339821|ref|ZP_05967679.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC 35316] gi|288318105|gb|EFC57043.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC 35316] Length = 482 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 6/131 (4%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+++ DIDYFK INDN+GH GDK++ + ++ V G V R+GGEEFA A Sbjct: 332 LTVMLLDIDYFKSINDNYGHECGDKILTAFAQKVQQVVGEDGLVARMGGEEFAVVANTGD 391 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQA 243 Q LA +R I N ++ +T+S G+ R E +T++ AD Sbjct: 392 AQRGFELAERIRLTIANHPFTWRQQ-TLFLTVSIGLGSGKADPRVLTEVFNTLLTEADDY 450 Query: 244 LYVAKKSGRNR 254 LY +KK+GRNR Sbjct: 451 LYRSKKAGRNR 461 >gi|152997836|ref|YP_001342671.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150838760|gb|ABR72736.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 452 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 10/162 (6%) Query: 102 QLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+G N + +L + S++ D+D+FK+IND FGH VGD V+ Sbjct: 294 ELATRDKLTGTFNRYKWDEQIKDELALANRGHHFSLILLDVDHFKKINDGFGHDVGDNVL 353 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L + L + R+GGEEFA ++ ++A +LA LRK I + +N + P Sbjct: 354 KLLVNTLRKRLRETDVLFRIGGEEFAILLRDTNLKDAGVLAEQLRKKI--NLLNENGMPP 411 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 TIS G+ + + + I+ RAD LY AK +GRNRVV Sbjct: 412 --FTISLGVTDYQDFDDQTRIVKRADILLYEAKGAGRNRVVV 451 >gi|315304308|ref|ZP_07874646.1| ggdef domain-containing protein [Listeria ivanovii FSL F6-596] gi|313627317|gb|EFR96112.1| ggdef domain-containing protein [Listeria ivanovii FSL F6-596] Length = 229 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 19/202 (9%) Query: 72 VIISITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISSL--G 123 +I + ISL++G++S ++ K+LF Y + S L + LS + I+ + G Sbjct: 32 MITFVVISLVIGFVSAGLMDNMIKSKQLFQKYEQDSTLDYLTQLSNVRQFDEKINHVMDG 91 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV--VVFGTPMFVGRLGGEEFA 181 + E ++++ DID+FK IND + H GD ++ L+ L G+ F R GGEEF+ Sbjct: 92 TIRE-VTLMLIDIDFFKNINDTYEHDAGDAILKQLAKILKGNTTDGSEAF--RNGGEEFS 148 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIY 238 L S E A +R+ E I +G ++ ITIS G++ CH + I+T + Sbjct: 149 LILLYCSVDEGNYFAEHIRRETEEYDFVIPTGQTVKITISIGVS-GCH-DGITTSERLFK 206 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ALY AK +GRNR VC +D Sbjct: 207 TADEALYKAKLAGRNR-VCIAD 227 >gi|228961677|ref|ZP_04123285.1| GGDEF domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051085|ref|ZP_04194632.1| GGDEF domain protein [Bacillus cereus AH676] gi|229112827|ref|ZP_04242359.1| GGDEF domain protein [Bacillus cereus Rock1-15] gi|228670661|gb|EEL25973.1| GGDEF domain protein [Bacillus cereus Rock1-15] gi|228722296|gb|EEL73694.1| GGDEF domain protein [Bacillus cereus AH676] gi|228798027|gb|EEM45032.1| GGDEF domain protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 352 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 26/208 (12%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRI----------SQLSRIDCLSGLLN 114 L++ + +V + + S++ GYI+ FIS N + Q + ID L+GL N Sbjct: 150 LIKEIHIVGLYLISSIITGYIT-------FISANYVLQSNELFQTMKQYATIDALTGLGN 202 Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 F IS+ N+ L ++ DID+FK +ND +GHP GD+V+ + L + Sbjct: 203 VRQFDLEMNRHISNKHLKNDSLCLLLIDIDHFKHVNDTYGHPAGDEVLKQVGHILREMSA 262 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 P V R GGEEFA + R +E + G I IT+S G++E Sbjct: 263 FPDLVFRKGGEEFALLIPRKGIAYGIHVGEQTRIAVEKHSFELLDGTKIKITVSVGVSE- 321 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ I AD ALY +K++GRN+V Sbjct: 322 -YEGASEQFIQAADDALYYSKRNGRNKV 348 >gi|167588302|ref|ZP_02380690.1| diguanylate cyclase [Burkholderia ubonensis Bu] Length = 463 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 11/167 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151 ++ L+R D L+GL N A ++L E+L S++F D D+FKQ ND +GH G Sbjct: 292 LTDLTRTDPLTGLRNRRALDAALSDEWERLRRSSSGNLSLLFIDADHFKQYNDRYGHAQG 351 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 D + +L++ + R GGEEF A + E AA +A +R +E +++ Sbjct: 352 DTALRYLAECIRKHTRRRSDIAARYGGEEFVAVLPDTDEIGAAKVAEAIRDEVERNRLPG 411 Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + P ++I A + I + AD ALY AK+ GRNRV Sbjct: 412 FPDAVPPFTVSIGCATARKARPASIEALANHADSALYAAKRQGRNRV 458 >gi|170729116|ref|YP_001763142.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169814463|gb|ACA89047.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 485 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 5/186 (2%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS 130 +V+I + +L LG + E+ S ++++ + +HS + + + +S Sbjct: 302 IVVILVIANLTLGRYQRKL--EVMASTDKLTGATNRQMFEEYFSHSLQNAEISA--TPVS 357 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ DIDYFK +NDNFGH +GD VI +++ + + V R GGEEF Sbjct: 358 VILLDIDYFKSVNDNFGHSIGDLVIKTVANIIRRQLRSEDIVCRWGGEEFLLLLPNIDLS 417 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 AA +A +R+ I +I+++ I IT+S+G+A+ EP + +I R D ALY AK Sbjct: 418 HAADMAERIRESIAERKISVNEH-EIGITVSSGVAQYKLGEPRADLINRVDVALYQAKDR 476 Query: 251 GRNRVV 256 GR++VV Sbjct: 477 GRDQVV 482 >gi|307824284|ref|ZP_07654510.1| diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307734664|gb|EFO05515.1| diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 295 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 19/245 (7%) Query: 24 PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL-----SLVIISITI 78 PH+ IY + F++ + + +F + + + + E L+ N L ++ + Sbjct: 55 PHSAFIYTNTEFALEVKSGVFTRHSCNYALKVEQQQLGELKLMRNHRFSDGDLQLLETLL 114 Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSI 131 L+ + + L +++ +++ D L+ N ++F SL + N K LS+ Sbjct: 115 CCLIYPLKNATL------FHQALKMAYTDPLTQTHNRASFNDTIKREMSLATRNVKNLSL 168 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 +FFDID+FK IND +GH GD +A + + + R GGEEF + Sbjct: 169 IFFDIDHFKTINDTYGHDCGDITLALGAKWIKESLRDSDIIFRYGGEEFVILLSDTDANG 228 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A +LA +R IEN I +I IT S G++ + I + I RAD+A+Y AK G Sbjct: 229 AGLLAERIRTSIENHTIAYGM-ETIKITASLGVSTLRANDTIESFILRADKAMYAAKNKG 287 Query: 252 RNRVV 256 RN+VV Sbjct: 288 RNQVV 292 >gi|209542639|ref|YP_002274868.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5] gi|209530316|gb|ACI50253.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5] Length = 472 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 9/157 (5%) Query: 107 DCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ +LN F+ S+ SY +S++F DID+FK IND FGH GD V+ + Sbjct: 299 DPLTRVLNRR-FLPSIISYELRVAHQTGRPMSVLFLDIDHFKHINDTFGHAAGDSVLQAI 357 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L + R GGEEF + ++ I A LR+ IEN+ I + G I Sbjct: 358 ARVLEEASRLSDVIFRYGGEEFLVLMGDTDTEQMLIGAERLRQKIENTPIRLPDGNLHQI 417 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G A+ ++ AD ALY AK++GRNR+ Sbjct: 418 TVSIGAAQYAGHPDYEELLRAADAALYRAKRNGRNRI 454 >gi|116252228|ref|YP_768066.1| GGDEF family sensory box protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256876|emb|CAK07970.1| putative transmembrane GGDEF family sensory box protein [Rhizobium leguminosarum bv. viciae 3841] Length = 391 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 2/164 (1%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 ++ +L+ D L+G+ N F +SL + V DID FK++ND +GH GD V+ Sbjct: 212 KLIRLANTDMLTGIPNRQHFFNSLPKCLAPGDAFVLIDIDLFKRVNDMYGHDKGDVVLTN 271 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++ + + GRLGGEEF+ G ++ A LA +R+ + N+ + G + Sbjct: 272 VARTIARSAPSSCVFGRLGGEEFSLFLRGQTQSSAFALAERIREAV-NAVSLVFEGNQVT 330 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 ++SAG+A + RADQALY+AK GRNRV FS + Sbjct: 331 PSVSAGVALWEAGLTEQDVQKRADQALYIAKNKGRNRVELFSSV 374 >gi|307822936|ref|ZP_07653166.1| diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307735711|gb|EFO06558.1| diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 463 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL+N AF+ L + +++ + D+D+FK IND +GH GD V+ L+ Sbjct: 304 DPLTGLINRRAFLPRLQNEHQRALRTGNTYTFAMLDLDHFKSINDAYGHHCGDAVLCALA 363 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +V + V R+GGEEF EA I +RK E+S ++ G SI +T Sbjct: 364 AVMVENCRSIDAVVRMGGEEFGILFPECHIDEALIALERIRKRFESSS-TMADGKSIFVT 422 Query: 220 ISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVV 256 +S G+A E T ++ RAD+ALY AK GRN++V Sbjct: 423 VSIGVAAFAGTEEKDTEVVKRADRALYAAKAEGRNQIV 460 >gi|304394293|ref|ZP_07376216.1| diguanylate cyclase [Ahrensia sp. R2A130] gi|303293733|gb|EFL88110.1| diguanylate cyclase [Ahrensia sp. R2A130] Length = 378 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 27/205 (13%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P Y + +I+V L + TI+L ++++ +S Q + D L+GL N Sbjct: 180 PIYAVVWIIVSQL---LAGTTIAL--------SMRDVIVSAR---QEAETDALTGLANRR 225 Query: 117 AF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 AF I G ++ ++V DID+FK+IND+FGH GD+ IA ++ + Sbjct: 226 AFDRAIQRQGRKDDLAALVMIDIDHFKRINDSFGHDEGDRCIALVAGLIAQAAPEGTHAV 285 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 RLGGEEFA A+ +A ++ ++ I ++ P ++ T+S G++E P Sbjct: 286 RLGGEEFAVLVNDGGVATASAVAQNI-----HNNIRQATRP-LNFTVSIGVSE----GPR 335 Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258 + RAD+ALY AK GRN+ + Sbjct: 336 DVLYKRADEALYQAKNDGRNKTCVW 360 >gi|237799945|ref|ZP_04588406.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022800|gb|EGI02857.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 421 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/215 (31%), Positives = 102/215 (47%), Gaps = 28/215 (13%) Query: 50 LFYI--GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107 LFY ++P +E L +S IS ++ LG ++ +++ D Sbjct: 216 LFYAEHSISPLRNVEGTLTHYVS---ISQDVTTRLG------------REQKLLEIAHSD 260 Query: 108 CLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+GL N + IS+ S++ DID+FK++ND GHP GD + ++ Sbjct: 261 TLTGLDNRRSAEHTLERMISTAWITGNPFSLIICDIDHFKRVNDQHGHPAGDAALKSVAS 320 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 T R GGEEF SS ++A LA +RK +E +I + +TI Sbjct: 321 MFKHQIRTHDVAARWGGEEFLIHVPDSSLKQAVELAERVRKSVEGLEIPETGS----VTI 376 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E +++I RAD+ALY AK+ GRNRV Sbjct: 377 SLGVAALDPGETAASLIQRADKALYQAKRLGRNRV 411 >gi|330988113|gb|EGH86216.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 425 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 95/188 (50%), Gaps = 22/188 (11%) Query: 85 ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128 + G+I + IS + ++L R D L+GL N A I + + Sbjct: 233 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 292 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 S++ DID+FK +ND +GHP GD+V+ ++ L R GGEEF SS Sbjct: 293 FSLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSS 352 Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 AA LA+ +R+ +E I N S +TIS G+A+ E +++I RAD+ALY A Sbjct: 353 LDHAAELADRIREGVEGLLIPNTGS-----VTISLGVAQLSPGETAASLIQRADKALYQA 407 Query: 248 KKSGRNRV 255 K+ GRNRV Sbjct: 408 KRRGRNRV 415 >gi|170727525|ref|YP_001761551.1| PAS/PAC sensor-containing diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169812872|gb|ACA87456.1| diguanylate cyclase with PAS/PAC sensor [Shewanella woodyi ATCC 51908] Length = 482 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 8/161 (4%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+G N F +SS ++ +I+ D+D+FK IND FGH GD V+ Sbjct: 310 LASTDPLTGAYNRRCFNELSQKSMSSTERQEQEFTILLIDLDFFKSINDKFGHAAGDDVL 369 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + +GR GGEEF A S ++A +AN +R IEN + + G Sbjct: 370 IETVKAINTCIRESDILGRYGGEEFVVALPNSDNKKAREVANRIRLCIENMVVK-TQGHD 428 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T S G+A + I +AD LY AK +GRN+VV Sbjct: 429 IKLTASIGLATSSGGHQLEKQINQADTYLYYAKDNGRNQVV 469 >gi|104782240|ref|YP_608738.1| diguanylate cyclase [Pseudomonas entomophila L48] gi|95111227|emb|CAK15947.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas entomophila L48] Length = 531 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 93/179 (51%), Gaps = 14/179 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144 ++L+E NR +Q D L+GL+N +S L + S + D+D+FK++ND Sbjct: 359 NLLQERIGRLNRDAQ---TDPLTGLVNRRGLEFALSLLQAEGRDFSAIVLDVDHFKRVND 415 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH VGD V+ L++ + + R GGEEF G+S + A +A LR ++ Sbjct: 416 GHGHAVGDTVLHRLAELMRGACREGDVLCRTGGEEFLMLLPGASLEAALSVAERLRLAVQ 475 Query: 205 NSQINISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 N+ I P +T+S G+A EP +T+ AD+ALY AK++GRNRV D Sbjct: 476 NTAI----APVGGVTVSLGVARWQALPDSEPDATLKA-ADRALYQAKRAGRNRVCSVRD 529 >gi|91227013|ref|ZP_01261550.1| GGDEF family protein [Vibrio alginolyticus 12G01] gi|91188815|gb|EAS75101.1| GGDEF family protein [Vibrio alginolyticus 12G01] Length = 480 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 11/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFG 147 ++L I+ ++ +++ D L+ L N I L N L+++ FDID FK IND +G Sbjct: 297 RQLTIANQQLLEMTLTDSLTKLYNRRHLIEQLALLNHLKRNLTVMVFDIDDFKSINDRYG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+ I +++ + M + R+GGEEFA SE+EA AN L K + + Sbjct: 357 HLAGDRAIVAIAEAAKSMTDDRMTLARIGGEEFALVTSSLSEREALNFANMLCKAVYDQP 416 Query: 208 INISSGPSIHITISAGIAERCHKEPISTII---YRADQALYVAKKSGRNRVV 256 + I G +IH++IS G C P T I AD+ +Y K G+NR V Sbjct: 417 V-ILGGQAIHLSISLG----CAYYPEFTHIVSLQDADELMYQGKSEGKNRAV 463 >gi|77463986|ref|YP_353490.1| response regulator receiver modulated diguanylate cyclase [Rhodobacter sphaeroides 2.4.1] gi|77388404|gb|ABA79589.1| response regulator receiver modulated diguanylate cyclase [Rhodobacter sphaeroides 2.4.1] Length = 461 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 13/168 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ +D L+GL N + L + +E+ +++ D+D FK +ND +GH GD V Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERARAADERFAVMVIDLDRFKSVNDRWGHGAGDAV 346 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSG 213 + ++ +L + R+GGEEF A E A +A LR+ +E + + G Sbjct: 347 LVAVARRLHANLRPGDLIARIGGEEFLVALPDVPRPEDAHAVAERLREAVEEEPVPLPGG 406 Query: 214 PSIHITISAGIA----ERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 S+ +TIS G+A E + EP+ ++ RAD AL +AK +GRN+V Sbjct: 407 GSLRVTISVGLALSPDEAGRRAEPVDAVVQRADSALLLAKSAGRNQVT 454 >gi|218233533|ref|YP_002370191.1| ggdef family protein [Bacillus cereus B4264] gi|218161490|gb|ACK61482.1| ggdef family protein [Bacillus cereus B4264] Length = 352 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 26/208 (12%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRI----------SQLSRIDCLSGLLN 114 L++ + +V + + S++ GYI+ FIS N + Q + ID L+GL N Sbjct: 150 LIKEIHIVGLYLISSIITGYIT-------FISANYVLQSNELFQTMKQYATIDALTGLGN 202 Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 F IS+ N+ L ++ DID+FK +ND +GHP GD+V+ + L + Sbjct: 203 VRQFDLEMNRHISNKHLKNDSLCLLLIDIDHFKHVNDTYGHPAGDEVLKQVGHILREMSA 262 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 P V R GGEEFA + R +E + G I IT+S G++E Sbjct: 263 FPDLVFRKGGEEFALLIPRKGIAYGIHVGEQTRIAVEKHSFELLDGTKIKITVSVGVSE- 321 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ I AD ALY +K++GRN+V Sbjct: 322 -YEGASEQFIQAADDALYYSKRNGRNKV 348 >gi|1336656|gb|AAB01344.1| Orf1 [Bacillus subtilis subsp. subtilis str. JH642] Length = 199 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 12/167 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGS-YNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155 + D L+G+ N F + + Y + + ++++ DID+FK IND +GH GD+V+ Sbjct: 32 AHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQYGHHEGDQVL 91 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L +L R+GGEEFA S +AA +A +R + ++ I +++G Sbjct: 92 KELGLRLKQTIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRSTVSDAPIVLTNGDE 151 Query: 216 IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +TIS G A + ++P S I ADQ LY AK++GRNR VCFS+ Sbjct: 152 LSVTISLGAAHYPNNTEQPGSLPIL-ADQMLYKAKETGRNR-VCFSE 196 >gi|253998775|ref|YP_003050838.1| diguanylate cyclase [Methylovorus sp. SIP3-4] gi|253985454|gb|ACT50311.1| diguanylate cyclase [Methylovorus sp. SIP3-4] Length = 398 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 19/239 (7%) Query: 40 ATVIFIANIFLFYIGLTPFYGLEYIL------VENLSLVIISITISLLLGYISGSILKEL 93 A + F + + Y G++ + IL N+ +++ + +L+ + G ++ Sbjct: 158 AVIFFTMAVLMAYRGISALFADGPILDHPMGWQPNVLTLLVGSMLQMLVTF--GLVMMVS 215 Query: 94 FISYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEK-LSIVFFDIDYFKQINDNF 146 F + + Q + D L+G+LN ++S G N+ L ++ DID FK IND + Sbjct: 216 FRKSSELEQYAHYDALTGILNRRGLEEAARRLASFGRRNDSGLVMLLLDIDLFKHINDRW 275 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GHPVGD+V+ L+ Q+ + R GGEEF GS+EQE A +R+ +E+ Sbjct: 276 GHPVGDEVLRQLTRQIKTQTREEDVLARYGGEEFCLLLPGSTEQEGIQCAERIRQSVES- 334 Query: 207 QINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + I GP ++ T+S GI R +++ AD ALY AKK+GRN+ V +S + Sbjct: 335 -LRIVQGPVTLQFTVSVGITCARLAGYDFRSLLASADAALYAAKKAGRNQGVAYSSLSG 392 >gi|239833309|ref|ZP_04681637.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239821372|gb|EEQ92941.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 379 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 84/162 (51%), Gaps = 9/162 (5%) Query: 102 QLSRIDCLSGLLNH---SAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+ + N AFISS+ E ++IV DID+FK +ND FGH GD +I Sbjct: 215 ELAHTDPLTQVRNRRGMQAFISSVHLDQGAREPVTIVLADIDHFKMVNDRFGHHAGDMII 274 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGP 214 + L G V RLGGEEFA G+S L LR + +IS+ Sbjct: 275 VDFAQLLQKWAGRGSCVARLGGEEFAILLPGTSMHIGVTLIEALRLEFASRKWPHISA-- 332 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +H+T S G+ EP ++ I RAD LY AK+ GR+R+V Sbjct: 333 HLHLTASFGLTTLEQGEPFNSAIARADTNLYKAKQRGRDRLV 374 >gi|158341558|ref|YP_001522722.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158311799|gb|ABW33408.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017] Length = 394 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 11/205 (5%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118 LVEN + + + L I ++LF + ++S L+ D L+GL N F Sbjct: 189 LVENNKKLELEVQAKLHAQQNLEIINEKLFEANKKLSLLANQDALTGLANRRYFDVYLQQ 248 Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLG 176 S LSI+ DID+FK ND++GHP GD + +S + V G + F R G Sbjct: 249 VWESAQENKHPLSILICDIDFFKGYNDSYGHPEGDHCLQRVSQIIHRVAGKSEGFAARFG 308 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIA--ERCHKEPI 233 GEEFA ++ ++ +A+ LR I N+++ + +S S ++T+S G+ + I Sbjct: 309 GEEFAIVLPNTNLIDSQTIADMLRSEIHNARLPHRASTVSEYVTVSIGVTSIQFQSDGSI 368 Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258 + +I RADQALY AKK GRN+ V Sbjct: 369 NDLILRADQALYEAKKLGRNQFVTL 393 >gi|34557608|ref|NP_907423.1| hypothetical protein WS1243 [Wolinella succinogenes DSM 1740] gi|34483325|emb|CAE10323.1| conserved hypothetical protein [Wolinella succinogenes] Length = 480 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 8/175 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 S ++EL R + + ID L+G+ SL Y + S+ FFDID+FK Sbjct: 302 SKIEELTQELCRAQEEASIDSLTGVHTRRFLEESLSRFEALFLRYESRYSVAFFDIDFFK 361 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND +GH GD+V+A L R GGEEF + EA A +R Sbjct: 362 KINDKYGHEAGDRVLATFGRLLKQSVRQEDIAARYGGEEFIVILPEMNLVEAWRFAERIR 421 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++E S + + I +++S GIAER E +I AD LY AK+ GRN++ Sbjct: 422 ALVERS-VFVYQDMRIKVSVSGGIAERSECEDRKALIKFADARLYEAKEGGRNQI 475 >gi|88858283|ref|ZP_01132925.1| putative two-component response regulator protein with GGDEF domain [Pseudoalteromonas tunicata D2] gi|88819900|gb|EAR29713.1| putative two-component response regulator protein with GGDEF domain [Pseudoalteromonas tunicata D2] Length = 421 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 85/174 (48%), Gaps = 11/174 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +I + D L+ L N F S + L + DIDYFKQIND +GH GD Sbjct: 249 KIKDAANRDYLTNLYNRRYFYQQAQYKLKHDSKKQTLFLAMLDIDYFKQINDTYGHQAGD 308 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ LS L F + RLGGEEFA +A L ++ R I N + + Sbjct: 309 EVLVSLSSLLQQHFPETL-TARLGGEEFAVVFEAEDNDDANELMDEFRFFISNRMFSFAE 367 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 P I ++IS GIA + + +I +AD ALY AK GRN+VV F +E C Sbjct: 368 QP-IAVSISIGIAA-VNDAALEHVIQQADLALYDAKGQGRNQVVFF--VEQVQC 417 >gi|308273736|emb|CBX30338.1| hypothetical protein N47_D31470 [uncultured Desulfobacterium sp.] Length = 397 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 88/177 (49%), Gaps = 7/177 (3%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140 I + L IS + QLS ID L+GL N L YN LS++ DID FK Sbjct: 213 EIKEALRISKEQYKQLSIIDDLTGLFNKRRLNEQLKWETSRALRYNRPLSLLLMDIDNFK 272 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND +GH GD+V+A L+ + R GGEEF +S + +A +R Sbjct: 273 SVNDIYGHSQGDRVLAGLARMVKNCIRDSDIAFRYGGEEFIIILPETSIDNSLKVAGRIR 332 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + + ++ I IT+S G + E + I RADQ +Y AKK+G++RV+C Sbjct: 333 QSLASLIFPVNLSDKITITLSIGATQYAPGEDQNDFIARADQYMYYAKKNGKDRVIC 389 >gi|300690703|ref|YP_003751698.1| signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum PSI07] gi|299077763|emb|CBJ50401.1| putative signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum PSI07] Length = 551 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 9/155 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L F++ + E+L +V D+D+FK+IND +GH VGD + + Sbjct: 395 DHLTGVLTRRRFLALFETVLTRTHVRGEQLVLVLADLDHFKRINDTWGHAVGDLALQRFA 454 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V + +GRLGGEEFA ++ ++AA + LR + + ++ SG + +T Sbjct: 455 SLATNVMRSSDLIGRLGGEEFAVVMSRTTLEDAAGVVERLRAAVAEADESLPSG--LAMT 512 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +S G+ + S ++ RAD ALY AK+SGRNR Sbjct: 513 VSLGMTACRPGDTASEMLRRADLALYRAKESGRNR 547 >gi|160873548|ref|YP_001552864.1| diguanylate cyclase [Shewanella baltica OS195] gi|160859070|gb|ABX47604.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella baltica OS195] gi|315265778|gb|ADT92631.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella baltica OS678] Length = 621 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 11/182 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 L+EL ++++ S ID L+G+ N SAF L ++++ DID FK I Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD+ + ++ L P V R GGEEFA ++E A +A +R Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560 Query: 202 IIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + G +I +TIS G++ + + + ++ +AD+ALY AK GRN+V FS Sbjct: 561 AVASLHFEW-EGVAIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLFS 619 Query: 260 DI 261 + Sbjct: 620 SV 621 >gi|108762534|ref|YP_635470.1| response regulator/GGDEF domain-containing protein [Myxococcus xanthus DK 1622] gi|108466414|gb|ABF91599.1| response regulator/GGDEF domain protein [Myxococcus xanthus DK 1622] Length = 673 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 22/191 (11%) Query: 84 YISGSILKELF-------ISYNRIS-QLSRIDCLSGLLNHSAFISSLGS-------YNEK 128 Y+S +L+E + R+S + + D L+GLL F+ L + + Sbjct: 484 YLSKPVLREELRARVQARLERTRLSRERAERDGLTGLLLRRPFLDGLRARLAESRRQGKP 543 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L++ F D+D+FKQ+ND +GH GD+V+ +L L F GR GGEEF LG S Sbjct: 544 LALCFLDVDHFKQVNDRYGHLAGDRVLMWLGRLLGARFRREDVRGRWGGEEFVVGLLGES 603 Query: 189 EQEAA-ILANDLRKIIENSQI--NISSGPSIHITISAGIA-ERCHKEPISTIIYRADQAL 244 A+ ILA R E S + + +G H+T SAGIA + + +++ AD L Sbjct: 604 AGSASEILA---RTAAELSDMTFDGDTGEPFHVTFSAGIAVSPGDGDTVESLLRTADARL 660 Query: 245 YVAKKSGRNRV 255 AK++GRNR+ Sbjct: 661 LRAKENGRNRI 671 >gi|308048339|ref|YP_003911905.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] gi|307630529|gb|ADN74831.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] Length = 409 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 85/173 (49%), Gaps = 22/173 (12%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 Q++ +D L+G+ A +L + S+ DID+FK+ ND +GH VGD+V+ ++ + Sbjct: 233 QMAFLDELTGIPGRRALNMALKRVGRRYSLAMMDIDHFKKFNDTYGHDVGDEVLKLVASR 292 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS------ 215 L V G V R GGEEF G + + A +R+ I + + S Sbjct: 293 LTRVKGGGQ-VFRYGGEEFTVLFPGKAPKACAAHLEAIREDIADYPFVVRKSKSRPDDEK 351 Query: 216 --------------IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253 + ITIS G+AER ++P +I ADQALY AKK+GRN Sbjct: 352 AGRQQRGQGGGGKTVQITISMGLAERTGEQPDAEAVIKAADQALYKAKKAGRN 404 >gi|162148023|ref|YP_001602484.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786600|emb|CAP56182.1| putative signalling protein, GGDEF family [Gluconacetobacter diazotrophicus PAl 5] Length = 471 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 9/157 (5%) Query: 107 DCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ +LN F+ S+ SY +S++F DID+FK IND FGH GD V+ + Sbjct: 298 DPLTRVLNRR-FLPSIISYELRVAHQTGRPMSVLFLDIDHFKHINDTFGHAAGDSVLQAI 356 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L + R GGEEF + ++ I A LR+ IEN+ I + G I Sbjct: 357 ARVLEEASRLSDVIFRYGGEEFLVLMGDTDTEQMLIGAERLRQKIENTPIRLPDGNLHQI 416 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G A+ ++ AD ALY AK++GRNR+ Sbjct: 417 TVSIGAAQYAGHPDYEELLRAADAALYRAKRNGRNRI 453 >gi|254481269|ref|ZP_05094514.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148] gi|214038432|gb|EEB79094.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148] Length = 390 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 12/183 (6%) Query: 90 LKELFISYNR-ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 L + I Y + +S L+ D L+ LLN I+ + S + DIDYFK+ Sbjct: 201 LASVLIEYQQHLSHLATEDPLTRLLNRRGLQDALRISIAHARRHGLPTSAIMIDIDYFKR 260 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND+FGH GD VI ++ + + V R GGEEF + A ILA +R+ Sbjct: 261 VNDSFGHETGDHVIQLVASMIERLCRESDVVARTGGEEFLIILANTDSASARILAERVRQ 320 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + + + I +TIS G+A + + + ADQA+Y+AK+ GRNRV + + Sbjct: 321 AVGERPLVVDQ-HRIPVTISLGVASASGEFNLDELSQEADQAMYLAKRGGRNRV---ASV 376 Query: 262 ENN 264 EN Sbjct: 377 ENK 379 >gi|220924043|ref|YP_002499345.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060] gi|219948650|gb|ACL59042.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060] Length = 384 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 10/171 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDN 145 ++ KE R+S L+ D L+G++N +S+ + + +++ FD+D+FK+IND Sbjct: 206 ALAKERLEWEQRLSALT--DPLTGVVNRRGLEERASVLLASGRATLLLFDLDHFKRINDT 263 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH +GD V+ + GRLGGEEFA G S E +A +R + Sbjct: 264 FGHGIGDAVLVGFCTLARTLLPPQAVFGRLGGEEFACVLPGDSAAEP--IAETIRHALAG 321 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + P++ +T+S G A + + ++ RAD+ALY AK+ GR+RVV Sbjct: 322 MRAECI--PNLRVTVSVGAAR--GEAGLDALLERADRALYRAKRLGRDRVV 368 >gi|104780511|ref|YP_607009.1| hypothetical protein PSEEN1308 [Pseudomonas entomophila L48] gi|95109498|emb|CAK14199.1| conserved hypothetical protein; GGDEF domain protein [Pseudomonas entomophila L48] Length = 358 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 20/217 (9%) Query: 50 LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109 L GL P + ++ L+ + + L LG + + +L R+S LSR D L Sbjct: 135 LLGTGLQP----QATQLQVLACLPMLTLYPLALGGVCYQLAIKLAEHKRRLSALSRTDSL 190 Query: 110 SGLLNHSAFISSLG-----SYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 +GLLNH ++ L ++L I DID+FK IND +GH VGD V+ LS +L Sbjct: 191 TGLLNHGSWKDLLLLKFQICQQQQLPAVIALIDIDHFKTINDTYGHVVGDCVLRQLSQEL 250 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---ENSQINISSGPSIHIT 219 GR GG+EF G+ E A LR+ + N Q+ P + I+ Sbjct: 251 KRSLREDDLAGRYGGDEFCVILPGTQEAHACQAMERLRERVGDYRNPQL-----PDLRIS 305 Query: 220 ISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRV 255 +S G+A P + AD+ALY AK GR++V Sbjct: 306 LSIGLAAFQPGLPTPEHWLAEADRALYAAKHQGRDQV 342 >gi|18310542|ref|NP_562476.1| GGDEF/HD domain protein [Clostridium perfringens str. 13] gi|18145223|dbj|BAB81266.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 563 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 13/163 (7%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ NH F L NEKLS++F DIDYFK ND +GH GD+ + + Sbjct: 196 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 255 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218 L + V R GGEEFA +SE+EA +A +R +E + + P+ + Sbjct: 256 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 315 Query: 219 TISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 T+S GIA ++ E ++ AD ALY AK +NRV + Sbjct: 316 TVSVGIAVFPDKAKSEL--ELVKCADDALYRAKFFHKNRVETY 356 >gi|254459200|ref|ZP_05072622.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Campylobacterales bacterium GD 1] gi|207084093|gb|EDZ61383.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Campylobacterales bacterium GD 1] Length = 460 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 83/168 (49%), Gaps = 13/168 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148 S R+ +L+ D L+GL N S +SL Y ++ DIDYFK +ND GH Sbjct: 295 SNERLKELAIKDYLTGLYNRSKLDNSLEYQIKRSKRYESVFGVIMMDIDYFKSVNDKHGH 354 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGDKV+ + L + VGR GGEEF + + LA+ +R+ IE Sbjct: 355 QVGDKVLLEFAKVLTDISRETDIVGRWGGEEFLIIIENADKDGITNLAHKIRETIE---- 410 Query: 209 NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + P + T S G+ E I+ +I R D+ALY AK SGRN+V Sbjct: 411 -MHDFPVVKRKTASLGVTIYNKDEKINELIGRVDKALYKAKNSGRNQV 457 >gi|296161270|ref|ZP_06844078.1| diguanylate cyclase [Burkholderia sp. Ch1-1] gi|295888428|gb|EFG68238.1| diguanylate cyclase [Burkholderia sp. Ch1-1] Length = 372 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 87/175 (49%), Gaps = 21/175 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QL D L+GL N F L Y ++ +F DID FK+IND +GH Sbjct: 189 ERLKQLGMTDSLTGLANRRYFDERLREEVMRAVRYRMPVACLFIDIDSFKRINDTYGHQT 248 Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD+ +A ++ Q V + T V R GGEEF AA L +A +A +R +E Sbjct: 249 GDRALAAVAACVRQQVRLGDT---VARYGGEEF-AALLQGDRADALTVAERVRLAVERLA 304 Query: 208 INISSGPSIHITISAGIAER-CHKEPIS------TIIYRADQALYVAKKSGRNRV 255 + G I +T+S G+A R P I+ AD+A+Y AK++GRNR+ Sbjct: 305 LQDDHGERIALTVSIGVASRMVSGTPTEAATLGGAIMEEADRAMYQAKRNGRNRI 359 >gi|297569589|ref|YP_003690933.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] gi|296925504|gb|ADH86314.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] Length = 612 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 97/185 (52%), Gaps = 12/185 (6%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLS 130 S LL + I E+ ++ R+ +L+ D L+GL N ++L + S Sbjct: 409 SKLLAAVCEQI--EVALANARLYRLAVTDSLTGLRNKRYCETALRKLVEAHRQDRHRPFS 466 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D+FK++ND GHPVGD+V++ L++ + R GGEEF + Sbjct: 467 VLMLDLDHFKRVNDTHGHPVGDEVLSQLAELIRRQLRQDDVACRYGGEEFIVLVTDGPQT 526 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249 I A R + E++ + + G ++H TIS G+A H + ++ +I ADQALY AK+ Sbjct: 527 GHKIAARLCRAVDEHT-FHCAGGLALHNTISIGVAGFPAHGKTVAEVIGAADQALYEAKR 585 Query: 250 SGRNR 254 +GRNR Sbjct: 586 AGRNR 590 >gi|218781597|ref|YP_002432915.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218762981|gb|ACL05447.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 418 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 19/180 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----------SIVFFDIDYFK 140 +L R+ +LS D L+ L N +F Y +KL ++ D+D FK Sbjct: 244 DLLRHIKRVKELSSRDYLTNLFNRRSFFE----YGQKLYASAMRDQTVIAVAMLDVDEFK 299 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND+FGH GD+V+ ++D L+ F V R GG+EF + E L +R Sbjct: 300 SVNDSFGHDAGDEVLKTVADTLMESFRETDIVSRFGGDEFCIIMANPDKNEVPALLERIR 359 Query: 201 KIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +EN I + G ++++IS G E C + + +I +ADQ L AK++G+N V S Sbjct: 360 TAVENKYIEV-DGQQVNVSISVGACTELC--DSLDIMIKKADQMLRQAKRAGKNNVQLIS 416 >gi|117618778|ref|YP_854578.1| TPR repeat-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560185|gb|ABK37133.1| tetratricopeptide repeat family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 596 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 14/176 (7%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHP 149 L S + +L+ D L+ L N A + L + ++ L+++ DID+FKQIND GH Sbjct: 418 LHRSSRHLYKLATFDQLTELPNRRALLERLATQWQQEGPLTLLIIDIDHFKQINDRHGHQ 477 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENSQI 208 GD+ I L+ +L VGR GGEEF A L ++ + LA LR+ I QI Sbjct: 478 AGDRAIQRLARELRSWAPDLQLVGRWGGEEFLVAVPLPAA--DCWYLAEQLRQRI--GQI 533 Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + +TIS G+A R + + +I+RAD A+Y AK+ GRN+ + ++ N Sbjct: 534 D-----KPRMTISIGVAGRSAADDGLGQLIHRADMAMYQAKRQGRNQTILAAEPLN 584 >gi|91777889|ref|YP_553097.1| diguanylate cyclase [Burkholderia xenovorans LB400] gi|91690549|gb|ABE33747.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 387 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 87/175 (49%), Gaps = 21/175 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QL D L+GL N F L Y ++ +F DID FK+IND +GH Sbjct: 204 ERLKQLGMTDSLTGLANRRYFDERLREEVMRAVRYRMPVACLFIDIDSFKRINDTYGHQT 263 Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD+ +A ++ Q V + T V R GGEEF AA L +A +A +R +E Sbjct: 264 GDRALAAVAACVRQQVRLGDT---VARYGGEEF-AALLQGDRADALTVAERVRLAVERLA 319 Query: 208 INISSGPSIHITISAGIAER-CHKEPIS------TIIYRADQALYVAKKSGRNRV 255 + G I +T+S G+A R P II AD+A+Y AK++GRNR+ Sbjct: 320 LQDDHGERIALTVSIGVAARMVSGTPTEAAMLGGAIIEEADRAMYQAKRNGRNRI 374 >gi|163848137|ref|YP_001636181.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222526038|ref|YP_002570509.1| diguanylate cyclase with GAF sensor [Chloroflexus sp. Y-400-fl] gi|163669426|gb|ABY35792.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222449917|gb|ACM54183.1| diguanylate cyclase with GAF sensor [Chloroflexus sp. Y-400-fl] Length = 589 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 12/168 (7%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F+ L Y+ +SI D+D+FKQIND FGH GD V+ ++ Sbjct: 421 DNLTGLANRRHFLQVLHQEMERNRRYHTPVSIAMIDVDHFKQINDTFGHIAGDYVLREIA 480 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + R GGEEF ++ ++A LR ++ + I I G I+ T Sbjct: 481 RRCRQQLRDVDVLARYGGEEFGLILPETTYEQALKATERLRTVLATTPIMI-DGRQINPT 539 Query: 220 ISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 IS G+A + +P S++I AD+ALY+AK+ GRNRV ++ N+ Sbjct: 540 ISIGVASFHPTVYPDP-SSLIADADRALYLAKQQGRNRVCGVQELTND 586 >gi|291282626|ref|YP_003499444.1| Diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7 str. CB9615] gi|290762499|gb|ADD56460.1| Diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7 str. CB9615] gi|320658904|gb|EFX26534.1| Diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7 str. USDA 5905] Length = 472 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 8/156 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSI 424 Query: 223 GIAE-----RCHKEPISTIIYRADQALYVAKKSGRN 253 G+ R + + ++ AD LY +KK GRN Sbjct: 425 GVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRN 460 >gi|209551481|ref|YP_002283398.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537237|gb|ACI57172.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 537 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 10/164 (6%) Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ D L+GL N SA ++ + +S+V FD+D+FK+IND GH GD V+ Sbjct: 351 AQTDLLTGLYNRRGFEFAASALLTQAEHGSRWISVVLFDLDHFKKINDINGHDAGDAVLR 410 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ F + + R GGEEF A S+ +AAI+A +R IE ++I + SG + Sbjct: 411 HVAGVARQNFRSFDLLVRHGGEEFLALLPDSTPDDAAIVAERVRLAIEAAEIPLESGEVL 470 Query: 217 HITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVC 257 +T S G A R ++ ++ RAD +LY AK SGRN VV Sbjct: 471 KVTASFGCAGRANEAANRNFEDLVKRADLSLYAAKASGRNCVVS 514 >gi|158424140|ref|YP_001525432.1| hypothetical protein AZC_2516 [Azorhizobium caulinodans ORS 571] gi|158331029|dbj|BAF88514.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 365 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 7/153 (4%) Query: 107 DCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+G+ N +L G+ + + +++ D+DYFK +ND +GH GD+V+ + D L Sbjct: 215 DPLTGIANRRGIERALEIQGASSRQWALILLDMDYFKTVNDQWGHVFGDRVLQNVVDALR 274 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V +GR GG+EF + S EA LA LR+ + + S G +TISAG Sbjct: 275 RVLREGDVIGRWGGDEFLVVSADLSAPEAEALAEKLRQAVAVLPDDESGG----VTISAG 330 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +A ++ + D ALY +K+ GRNRVV Sbjct: 331 VALWDGDGGLAEALRLVDAALYRSKQMGRNRVV 363 >gi|157145814|ref|YP_001453133.1| hypothetical protein CKO_01565 [Citrobacter koseri ATCC BAA-895] gi|157083019|gb|ABV12697.1| hypothetical protein CKO_01565 [Citrobacter koseri ATCC BAA-895] Length = 303 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 6/158 (3%) Query: 104 SRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S + + L ++ FDID FK +NDN+GH VGD V+ L Sbjct: 136 SNMDILTGLPGRRVLDESFDRQLIDAQPLNLYLLLFDIDRFKLVNDNYGHLVGDSVLRTL 195 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++A + +++ ++ IN G + I Sbjct: 196 ASNLSVWTRYDETPYRYGGEEFVIIIRTKTDEQACRAGLRICQLVADNPINYPDG-ELSI 254 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T++AGI + EP+ +I RAD+A+Y K++GRNR + Sbjct: 255 TVTAGITQAQQGEPLDVVIGRADRAMYRGKQTGRNRCM 292 >gi|104779395|ref|YP_605893.1| diguanylate cyclase [Pseudomonas entomophila L48] gi|95108382|emb|CAK13076.1| putative diguanylate cyclase (GGDEF domain protein) [Pseudomonas entomophila L48] Length = 661 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ + + E L++ D+D+FK+IND +GH GDKV Sbjct: 499 QKAMIDPLTGLPNRAAWSERVEHEVLDWQENGGHLAMAILDLDHFKRINDGYGHLAGDKV 558 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++DQL F+ R GGEEF +S A +A LR IE + G Sbjct: 559 LKIVADQLRKRLRGRDFIARFGGEEFVLLLPQTSPPAAVQVAETLRAAIEACPFHF-KGE 617 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT S GI+ E ++ RAD ALY AK GRNR+ Sbjct: 618 RVVITASIGISAFRSGERGDQVLKRADDALYRAKDKGRNRI 658 >gi|307822955|ref|ZP_07653185.1| response regulator receiver modulated diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307735730|gb|EFO06577.1| response regulator receiver modulated diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 617 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 13/174 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 EL + R+ ++ D L+GL N ++ L N+ LS++ D+DYFK +ND Sbjct: 443 ELAAANRRLKSMANTDVLTGLPNRRYALNRLEQEAATALRSNQPLSVLMLDLDYFKSVND 502 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH VGD+V+ ++ + T RLGGEEF A + A +LA +R IE Sbjct: 503 TLGHDVGDQVLIHAANLMRTTARTNDITCRLGGEEFLIIAPNTDGSTALLLAERIRNSIE 562 Query: 205 NSQINISSGPSIH--ITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 +Q G ++ +T+S G+A +P ++ RAD ALY+ K+ RN V Sbjct: 563 RNQ---PKGLALRHPVTVSIGVAGAMGAKPSWKELMKRADDALYLVKQGKRNGV 613 >gi|262403038|ref|ZP_06079598.1| GGDEF family protein [Vibrio sp. RC586] gi|262350537|gb|EEY99670.1| GGDEF family protein [Vibrio sp. RC586] Length = 338 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 91/174 (52%), Gaps = 8/174 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQIND 144 S LKE ++ + + D LSGL N AF +L +S++ DID+FK +ND Sbjct: 166 SRLKEQLA---KVQKDALFDSLSGLYNRRAFDDDMFTLSHAGNPVSLIMLDIDHFKALND 222 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD++I ++ +L + + R GGEEFA A S + A A +R+ IE Sbjct: 223 TYGHLFGDQIIRAIAKRLQSLCRDGVTAYRYGGEEFAIIAPNKSLRIARQFAESVRRSIE 282 Query: 205 NSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + SG S+ IT S G+ E E + +I RAD LY AK GRNRV+ Sbjct: 283 KLNVKDRRSGQSVGSITASFGVVENIQGESLEAMIGRADGLLYEAKNLGRNRVM 336 >gi|315127743|ref|YP_004069746.1| hypothetical protein PSM_A2681 [Pseudoalteromonas sp. SM9913] gi|315016257|gb|ADT69595.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 362 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 84/169 (49%), Gaps = 13/169 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFF--DIDYFKQINDNFGHPVG 151 I L+ D L+GL N F +L S K + F DID+FK+IND +GH VG Sbjct: 188 EIQHLAETDKLTGLYNRQKFDYALSQVITSSKETKTTNCLFICDIDHFKKINDAYGHLVG 247 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+A + + + R GGEEF +S A AN L+ I + Sbjct: 248 DKVLAEFAKLIKSNMPNHSLIARWGGEEFTIILPNTSLTNALTQANALKDYISTHPV--- 304 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +I +TIS G+A + + +++ RAD ALY AK +GRN V FSD Sbjct: 305 --ANIQLTISIGVATISSDDSVISVLERADSALYEAKNNGRNSVY-FSD 350 >gi|269968332|ref|ZP_06182352.1| GGDEF family protein [Vibrio alginolyticus 40B] gi|269827050|gb|EEZ81364.1| GGDEF family protein [Vibrio alginolyticus 40B] Length = 480 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 11/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFG 147 ++L I+ ++ +++ D L+ L N I L N L+++ FDID FK IND +G Sbjct: 297 RQLTIANQQLLEMTLTDSLTKLYNRRHLIEQLALLNHLKRNLTVMVFDIDDFKSINDRYG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+ I +++ + M + R+GGEEFA SE+EA AN L K + + Sbjct: 357 HLAGDRAIVAIAEAAKSMTDDRMTLARIGGEEFALVTSSLSEREALNFANMLCKAVYDQP 416 Query: 208 INISSGPSIHITISAGIAERCHKEPISTII---YRADQALYVAKKSGRNRVV 256 + I G +IH++IS G C P T I AD+ +Y K G+NR V Sbjct: 417 V-ILGGQAIHLSISLG----CAYYPEFTHIVSLQDADELMYQGKSEGKNRAV 463 >gi|212634782|ref|YP_002311307.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212556266|gb|ACJ28720.1| GGDEF domain protein [Shewanella piezotolerans WP3] Length = 413 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 14/167 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNFGH 148 ++ + + +D L+ + N F + Y EKL S+ DID+FK++ND +GH Sbjct: 248 KLWEQANLDYLTNVFNRRYFFNL---YEEKLPTITRNQGTLSLGLMDIDFFKKVNDGYGH 304 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+V+ + +L F V R GGEEF G S +++ L + R +E++ + Sbjct: 305 DVGDEVLVEFAKRLKHSFSQHFTVARFGGEEFVVGFKGLSVEKSFALLDRFRMQMESTPV 364 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + G + IT+S G+ H E + ++ RAD ALY AK+ GRN V Sbjct: 365 MTTKG-ELTITVSIGVTNFNHDENVDGMLQRADVALYEAKEGGRNLV 410 >gi|119490634|ref|ZP_01623039.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC 8106] gi|119453799|gb|EAW34956.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC 8106] Length = 329 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 84/162 (51%), Gaps = 13/162 (8%) Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N +S +YN SI+ DID+FK++ND +GH VGD+V+ ++ Sbjct: 148 DPLTGIFNRRHLMSISEIEYQKAVNYNRLFSIIMLDIDHFKKVNDTYGHIVGDQVLKRMT 207 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-----NISSGP 214 ++ + GR GGEEFA G+ + A +A LR+ I + I N SS Sbjct: 208 QEVQNLLREGDVCGRFGGEEFAIILPGADLKIALKIAERLRQAIADFYIPIYDSNSSSNL 267 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I ITIS G+ + + + RAD ALY AK GRN+V Sbjct: 268 KIKITISLGVTTYHIDDDKLDKMWRRADDALYQAKAKGRNQV 309 >gi|327189541|gb|EGE56694.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 384 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 10/165 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 S N++++L+ D L+G LN S+LGS + +S++ DID+FKQ+ND GH GD Sbjct: 215 SRNQLTELAHHDPLTGALNRGGLAQHASALGS--QPISLLIMDIDHFKQLNDRHGHAAGD 272 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ + + + R GG+EF A S ++A +A +R +E + + + Sbjct: 273 EILRLFARVSRGIMRPQDLLARQGGDEFLAVLKNLSREDAMAIAERIR--LEFAAV-VMQ 329 Query: 213 GPSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + + T+S G+A R +++++AD+ALY +K+ GRNRV Sbjct: 330 RPDLAVFPTLSIGVATRISGGDFESLMHKADEALYRSKREGRNRV 374 >gi|261212979|ref|ZP_05927263.1| sensory box/GGDEF family protein [Vibrio sp. RC341] gi|260838044|gb|EEX64721.1| sensory box/GGDEF family protein [Vibrio sp. RC341] Length = 308 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 21/178 (11%) Query: 99 RISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ QL+ D L+ L N SAF + S + LS + DID FK IND FGH Sbjct: 139 QLYQLANTDSLTQLCNRRKLWADFRSAFTRAKNS-KQPLSCISIDIDNFKLINDQFGHDK 197 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ FL+ V F GR+GGEEF + + A LA +R+ Sbjct: 198 GDEVLCFLARLFHHVISEHHFCGRVGGEEFIIVLENTDVETAFALAEQIRQ-------RF 250 Query: 211 SSGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + P HI + AG++ H++ I+ I R+DQALY AK+SGRNR + N Sbjct: 251 AEQPFFDQQEHIYLCAGVSSLHHEDHDIADIYRRSDQALYKAKRSGRNRCCIYRQSTN 308 >gi|317049668|ref|YP_004117316.1| diguanylate cyclase [Pantoea sp. At-9b] gi|316951285|gb|ADU70760.1| diguanylate cyclase [Pantoea sp. At-9b] Length = 474 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 123/249 (49%), Gaps = 22/249 (8%) Query: 24 PHTFMIYFSIFFSIFIATVIF----IANIFLFYIGLTPFYGLEYIL----VENLSLVIIS 75 P +I+ +I I I +++ I I L G+ G + +L + ++ L + + Sbjct: 215 PVPALIWCAIVLPIPITSLVLLITGITEIILVSHGVMNIQGDDALLPISHLTSVRLGVAT 274 Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSI 131 ITIS LL +S +++L R+S + D L+ LL+ S +L S + Sbjct: 275 ITISPLLVAVSMDAIRQL---NQRLSLRANFDFLTQLLSRSGLYENLRQEPFSPQRAAGV 331 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 V D+DYFK INDNFGH GD V+ ++ ++ V V R GGEEF + + Sbjct: 332 VMLDVDYFKTINDNFGHDAGDGVLEEIARRIQDVVNNRGLVCRFGGEEFVVVVFDYNHSQ 391 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALY 245 LA +R+ + + + G ++ +T S G+A ER + ++ +I AD+ LY Sbjct: 392 LYQLAEVIRQSMVREKFWL-QGNTVTVTASLGLALGNAVNEREWQGVVNRLISAADKNLY 450 Query: 246 VAKKSGRNR 254 ++K++GRN+ Sbjct: 451 LSKRNGRNQ 459 >gi|237730352|ref|ZP_04560833.1| diguanylate cyclase AdrA [Citrobacter sp. 30_2] gi|226905891|gb|EEH91809.1| diguanylate cyclase AdrA [Citrobacter sp. 30_2] Length = 366 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 10/184 (5%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132 LL ++S L L R+ +S D ++G+ N + + + +++ Sbjct: 181 LLFAWVSYQTLIRLAEHKRRLQVMSTRDGMTGVYNRRHWELLLRNEFDNCRRHQRDATLL 240 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA G+S A Sbjct: 241 IIDIDHFKSINDTWGHDVGDQAIVALTRQLQMTLRGSDVIGRFGGDEFAVIMCGTSASSA 300 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251 + + + + +Q+ +S P + + IS G+A E + AD ALY AK SG Sbjct: 301 IAAMSRVHERL--TQLRLSCAPQVDLRISVGVAPLTSETEHYREWLKSADMALYKAKNSG 358 Query: 252 RNRV 255 RNR Sbjct: 359 RNRT 362 >gi|330502862|ref|YP_004379731.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328917148|gb|AEB57979.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 308 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 1/129 (0%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + LS++ DID+FK INDN GH +GD+V+ ++ L V R GGEEF G Sbjct: 177 QPLSLLMLDIDHFKTINDNHGHALGDEVLKAVAQTLKNQLRNVDMVFRYGGEEFLVILSG 236 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 +S AA++ LR + Q + +G I ++IS G A E +++ RAD ALYV Sbjct: 237 TSRDGAALVGERLRFAVLELQC-LDAGRPIDVSISLGCASLLPGESAESLLRRADNALYV 295 Query: 247 AKKSGRNRV 255 AK+ GRNR+ Sbjct: 296 AKREGRNRL 304 >gi|284052991|ref|ZP_06383201.1| two-component response regulator [Arthrospira platensis str. Paraca] Length = 192 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 14/165 (8%) Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ ID L+G+ N + I G + + L D+D FK IND +GH GD V+ Sbjct: 30 IAEIDTLTGIENRYKSTEDINRLIRIAGRHKQPLCFAILDLDNFKDINDQYGHDTGDWVL 89 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SS 212 + L F VGR GGEEFA A G+S+Q+A N L+K+++ ++ + Sbjct: 90 HRFGEVLKKAFRQEDIVGRWGGEEFAVAMYGTSKQDA---MNRLQKVLDKWRLEVLVPED 146 Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 + +T S G+A+ ++YR AD LY AK++GRN+++ Sbjct: 147 NIAFSVTFSGGVAQYPEDGHDLQLLYRKADATLYEAKQAGRNQIM 191 >gi|152998364|ref|YP_001343199.1| sensor diguanylate cyclase [Marinomonas sp. MWYL1] gi|150839288|gb|ABR73264.1| 7TM domain sensor diguanylate cyclase [Marinomonas sp. MWYL1] Length = 569 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 14/227 (6%) Query: 43 IFIANIFLFYIGLTPFYGLEYILVENLSLVII--SITISLLLGYISGSILKELFISYNRI 100 IF LFY G F YI + + I+ ++ +SL++ + S L+ + + + + Sbjct: 346 IFSTMAVLFYKGKAEF---TYINSHGVGIGIMLEALVLSLIIAHRIRS-LETMKAAQDEL 401 Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 L+ D L+ L N F + + +I DID+FK++ND GH GDK Sbjct: 402 KLLASTDSLTQLFNRRHFNTEAEYLLQKAKQLQQPAAIAMLDIDHFKKVNDTHGHSFGDK 461 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 VI +++ L+ + R GGEEF +S EA L +R+ + + + +++ Sbjct: 462 VIIQVANTLMAECRQQDVLARYGGEEFIILMTNTSIGEAFNLVERIRQELAKATVILNNN 521 Query: 214 PSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259 S++ TISAGIA + PI I +AD+ALY AK++GRN+ + + Sbjct: 522 QSVNFTISAGIAAIDLENPILKNSINQADKALYQAKENGRNQSLVYK 568 >gi|87120354|ref|ZP_01076249.1| hypothetical protein MED121_09183 [Marinomonas sp. MED121] gi|86164457|gb|EAQ65727.1| hypothetical protein MED121_09183 [Marinomonas sp. MED121] Length = 505 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 21/172 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISS------LGSYNEKLSIV-FFDIDYFKQINDNFGHPVG 151 +I+Q + D ++ L N SA+ S L ++K I+ DID+FK++ND +GH G Sbjct: 341 KIAQAT-TDTVTNLPNRSAYQDSIMPMCLLAQKSKKPLILGVLDIDHFKKVNDTWGHLAG 399 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA------AAALGSSEQEAAILANDLRKIIEN 205 DKV+ L QL V + R GGEEF G S+ EA LA +E Sbjct: 400 DKVLNLLPRQLKNVMSEKDLLFRYGGEEFVFLLPNCNLETGQSKAEAIRLA------VEK 453 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 N++ P + ITIS GIA+ + E + RAD+ LY AK GRNRVV Sbjct: 454 MPFNVNGEP-VPITISIGIAQLANNEKHEELFDRADKYLYQAKSDGRNRVVS 504 >gi|261416541|ref|YP_003250224.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372997|gb|ACX75742.1| diguanylate cyclase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326891|gb|ADL26092.1| diguanylate cyclase (GGDEF) domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 605 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 15/174 (8%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 L+ D L+GL+NH + +L + YN + ++ DID+FK++ND +GHPVG Sbjct: 428 KDLATRDGLTGLMNHRSLQEALRTEKVRADRKKYN--IGVLMMDIDHFKRVNDTYGHPVG 485 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D+VI ++ + + V R GGEEF A + ++ + A +RK + + N+ Sbjct: 486 DEVIKGIATAISGEIRKEIDVVARYGGEEFVVALVDTTPEGMIETAERIRKAVGKLEFNV 545 Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +T+S G + E + + + ADQALY AK GRN+VV F +E Sbjct: 546 HLTDPLRVTVSIGAFLVEPEFSD-MKKAVNNADQALYKAKDGGRNQVVRFETVE 598 >gi|228911251|ref|ZP_04075056.1| GGDEF domain protein [Bacillus thuringiensis IBL 200] gi|228848427|gb|EEM93276.1| GGDEF domain protein [Bacillus thuringiensis IBL 200] Length = 352 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 18/204 (8%) Query: 65 LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118 L++++++V + + S++ GYI+ +L+ ELF + Q + +D L+GL N F Sbjct: 150 LIKDINIVGLYLISSIITGYITFISANYVLQSNELF---QTMKQYATVDALTGLGNVRQF 206 Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 IS+ N+ L ++ DID+FK +ND +GHP GD+V+ + L P Sbjct: 207 DLEMNRHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDL 266 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 R GGEEFA + +R +E+ + G I IT+S G++E ++ Sbjct: 267 AFRKGGEEFALLIPNKGLAYGIRMGEQIRIAVESHSFQLLDGTKIKITVSVGVSE--YEG 324 Query: 232 PISTIIYRADQALYVAKKSGRNRV 255 I AD ALY +K++GRN+V Sbjct: 325 SSEQFIQAADDALYYSKRNGRNKV 348 >gi|182627106|ref|ZP_02954825.1| GGDEF/HD domain protein [Clostridium perfringens D str. JGS1721] gi|177907516|gb|EDT70171.1| GGDEF/HD domain protein [Clostridium perfringens D str. JGS1721] Length = 563 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ NH F L NEKLS++F DIDYFK ND +GH GD+ + + Sbjct: 196 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 255 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218 L + V R GGEEFA +SE+EA +A +R +E + + P+ + Sbjct: 256 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 315 Query: 219 TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258 T+S GIA K + + AD ALY AK +NRV + Sbjct: 316 TVSVGIAVFPDKAKSELDLVKCADDALYRAKFFHKNRVETY 356 >gi|332529185|ref|ZP_08405149.1| Cyclic diguanylate phosphodiesterase domain protein [Hylemonella gracilis ATCC 19624] gi|332041408|gb|EGI77770.1| Cyclic diguanylate phosphodiesterase domain protein [Hylemonella gracilis ATCC 19624] Length = 623 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 12/184 (6%) Query: 83 GYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IV 132 GY+ GS + E + + + D L+GL N F+ SL S E++ ++ Sbjct: 438 GYLVGSRIDITERKQLEAELREQASTDALTGLANRRHFMQSLESELERVRRRNTLRACVL 497 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK++ND +GH GD ++ +D L GRLGGEEFA GS ++A Sbjct: 498 MLDLDHFKRVNDQYGHAAGDSLLRHFADLLRDELRGTDTAGRLGGEEFAVILPGSGMEDA 557 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSG 251 A L + + + + IH T+S G+A + + + RAD ALY AK++G Sbjct: 558 RTWAQRLCEAVSARPLAWGA-RHIHATVSVGVAILSPDDGAADAALSRADAALYRAKEAG 616 Query: 252 RNRV 255 RNRV Sbjct: 617 RNRV 620 >gi|261212328|ref|ZP_05926613.1| amino acid ABC transporter amino acid-binding protein [Vibrio sp. RC341] gi|260838259|gb|EEX64915.1| amino acid ABC transporter amino acid-binding protein [Vibrio sp. RC341] Length = 459 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 100/190 (52%), Gaps = 4/190 (2%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128 S+VI ++ +L L ++L + +++ L++ D L+G+ N F S L ++ Sbjct: 266 SIVIAALFYTLQLRRTVRLRTQQLENANQKLTHLAQTDSLTGIHNRHFFFSQLRKTQQES 325 Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 L+++ FDID FK IND +GH +GD+ I ++ + + M R+GGEEFA Sbjct: 326 GSLTLMVFDIDDFKAINDTYGHGIGDQAICLVAASVREILPPEMQFARIGGEEFAILIRA 385 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 S E+ LA +R+ I ++ +S+ + +T+S G A E T ++ AD +Y Sbjct: 386 KSAAESLQLAERIRQRIAEKKLVVSTTEFVSLTVSIGCAFYPSPENPFT-LHTADSLMYE 444 Query: 247 AKKSGRNRVV 256 K G+N+VV Sbjct: 445 GKHKGKNQVV 454 >gi|168206786|ref|ZP_02632791.1| GGDEF/HD domain protein [Clostridium perfringens E str. JGS1987] gi|168217696|ref|ZP_02643321.1| GGDEF/HD domain protein [Clostridium perfringens NCTC 8239] gi|170661812|gb|EDT14495.1| GGDEF/HD domain protein [Clostridium perfringens E str. JGS1987] gi|182380275|gb|EDT77754.1| GGDEF/HD domain protein [Clostridium perfringens NCTC 8239] Length = 563 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 13/163 (7%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ NH F L NEKLS++F DIDYFK ND +GH GD+ + + Sbjct: 196 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 255 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218 L + V R GGEEFA +SE+EA +A +R +E + + P+ + Sbjct: 256 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 315 Query: 219 TISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 T+S GIA ++ E ++ AD ALY AK +NRV + Sbjct: 316 TVSVGIAVFPDKAKSEL--ELVKCADDALYRAKFFHKNRVETY 356 >gi|183220482|ref|YP_001838478.1| hypothetical protein LEPBI_I1081 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910593|ref|YP_001962148.1| GGDEF domain-containing protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775269|gb|ABZ93570.1| GGDEF domain protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778904|gb|ABZ97202.1| Hypothetical protein with GGDEF domain; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 288 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 28/242 (11%) Query: 35 FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS-LLLG---YISGSIL 90 ++ F+ATV+F A FL Y + P IL+ + ++SI IS +LLG +I I+ Sbjct: 46 YNAFLATVLFSAMGFLVYFEILPSVN---ILMPTVKPTLMSIFISSILLGGSAFIVNQIV 102 Query: 91 KELFISYNRISQ----LSRIDCLSGLLNHSAFIS-----------SLGSYNEKLSIVFFD 135 +LF S ++Q ++ D L+G+ N +F S S+G Y ++ + FD Sbjct: 103 SKLFSSLTDVNQKLLAIAMTDPLTGISNRRSFFSNLEIELARKQRSVGPY--PIAFLLFD 160 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 +D FK IND +GH GD+V+ + L F R GGEEF + A ++ Sbjct: 161 LDLFKSINDTYGHEFGDQVLIEFATVLKTSLRKQDFPARWGGEEFLVLLPNTDLDGAIVV 220 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253 A +R + + I + S GI+ C+++ I+ +I +ADQ LY AK++GRN Sbjct: 221 AEKIRTSFHSLSF-YAKDKRIQCSTSVGISV-CNEQGINPEVVINQADQYLYEAKRNGRN 278 Query: 254 RV 255 ++ Sbjct: 279 QI 280 >gi|241204721|ref|YP_002975817.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858611|gb|ACS56278.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 391 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 2/164 (1%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 ++ +L+ D L+G+ N F +SL S + + DID+FK++ND GH GD V+ Sbjct: 212 KLIRLANTDMLTGIPNRQHFFNSLPKSLGSGDAFILIDIDFFKRVNDMHGHDKGDVVLIN 271 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++ + + GRLGGEEF+ G + A LA +R+ + N+ + G + Sbjct: 272 VARTIALSVPPSCVFGRLGGEEFSLFFRGQTAASAFALAERIREAV-NAVSLVLEGNQVT 330 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 ++SAG+A I RADQALY+AK GRNRV FS + Sbjct: 331 PSVSAGVALWEAGLTEQDIQKRADQALYIAKNKGRNRVELFSSV 374 >gi|163783658|ref|ZP_02178646.1| hypothetical protein HG1285_12742 [Hydrogenivirga sp. 128-5-R1-1] gi|159881063|gb|EDP74579.1| hypothetical protein HG1285_12742 [Hydrogenivirga sp. 128-5-R1-1] Length = 345 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ + + ID L+GL N +F +L + S++ D+D FKQIND +GH G Sbjct: 180 RVKEEANIDPLTGLRNRRSFERALSEFFRDFKKFGYPFSVIMIDLDNFKQINDTYGHLAG 239 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ + + L R GGEEF G + +EA ++A LRK+I N + Sbjct: 240 DKVLKEIGNILRNYLRAKDVPARTGGEEFTIILPGITREEALMVAERLRKVIANYTVE-H 298 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 I+ T S G+AE + E ++ AD+ LY AK+ G+N VV Sbjct: 299 EDKKINPTASFGVAEVNEQVETPEDLLRLADENLYKAKRRGKNTVV 344 >gi|110800454|ref|YP_696245.1| GGDEF/HD domain-containing protein [Clostridium perfringens ATCC 13124] gi|110675101|gb|ABG84088.1| GGDEF/HD domain protein [Clostridium perfringens ATCC 13124] Length = 563 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 13/163 (7%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ NH F L NEKLS++F DIDYFK ND +GH GD+ + + Sbjct: 196 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 255 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218 L + V R GGEEFA +SE+EA +A +R +E + + P+ + Sbjct: 256 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 315 Query: 219 TISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 T+S GIA ++ E ++ AD ALY AK +NRV + Sbjct: 316 TVSVGIAVFPDKAKSEL--ELVKCADDALYRAKFFHKNRVETY 356 >gi|296534519|ref|ZP_06896939.1| diguanylate cyclase [Roseomonas cervicalis ATCC 49957] gi|296265156|gb|EFH11361.1| diguanylate cyclase [Roseomonas cervicalis ATCC 49957] Length = 370 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 20/188 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 L + R+ +++ D L+GL N F +L + LS++ D D FK+ ND Sbjct: 175 RLLEALERMEEMATTDALTGLANRRRFEEALAVEWRRCAREGQPLSLLVLDADRFKRFND 234 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GHP GD+ + ++D L V P V R GGEEFA + AA+LA +R + Sbjct: 235 RYGHPAGDECLRLVADALASVARRPGDVAARHGGEEFALLMPKTDAAGAALLAERVRAAV 294 Query: 204 ENS-QINISSGPSIHITISAGIA------ERCHKEP-----ISTIIYRADQALYVAKKSG 251 ++ + ++ + PS +T+S G+A E P ++ AD+ALY AK G Sbjct: 295 ADARRPHLGNTPSGIVTVSIGVATTRPMPETGPAGPGILSGADALLSAADRALYAAKMGG 354 Query: 252 RNRVVCFS 259 RNR+ S Sbjct: 355 RNRIRVAS 362 >gi|158521137|ref|YP_001529007.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3] gi|158509963|gb|ABW66930.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3] Length = 357 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 22/200 (11%) Query: 78 ISLLLGYISGSIL--KELFISY---------NRISQLSRIDCLSGLLNHSAFISSLG--- 123 +++ L I G+IL L++SY RI +++ D L+ + N L Sbjct: 154 VTVKLEIIRGAILVLSLLWVSYMANYIANLRRRIKEMASFDALTEVYNRREIFEILDREK 213 Query: 124 SYNEKLSIVF----FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 S++++ +I F D+D FK++ND +GH GD+V+ + L T +VGR GGEE Sbjct: 214 SFSDRSAIPFSLCILDLDDFKEVNDTYGHQAGDEVLKAFARALRENVRTEDYVGRYGGEE 273 Query: 180 FAAAALGSSEQEAAILAND-LRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTII 237 F + ++ ++ D L K+ E I+ G + IT S G++ E I +I Sbjct: 274 FLVVFVNFECRDNSVTCVDRLLKVTERLTFPGIADG--LKITTSIGVSAYRPSETIDAVI 331 Query: 238 YRADQALYVAKKSGRNRVVC 257 RADQALY AK +G+NR+VC Sbjct: 332 ARADQALYEAKAAGKNRIVC 351 >gi|148548490|ref|YP_001268592.1| diguanylate cyclase [Pseudomonas putida F1] gi|148512548|gb|ABQ79408.1| diguanylate cyclase [Pseudomonas putida F1] Length = 523 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144 ++L+E NR +Q D L+GL N + +S L + N + + + DID+FK+IND Sbjct: 355 NLLQERIGRLNRDAQ---TDPLTGLGNRRSLEISLSLLEAENREFAAIALDIDHFKRIND 411 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH VGD+V+ L++ + + R GGEEF G++ AA +A LR ++ Sbjct: 412 SHGHEVGDQVLRQLAELMRRCCREGDLLCRTGGEEFLILLPGATLNVAAAVAERLRVTVQ 471 Query: 205 NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + P +TIS G+ H EP++ + AD+ALY AK+ GRNRV Sbjct: 472 DMPVE----PVGAVTISLGVTHWDGETHGEPMNA-LGEADRALYRAKQEGRNRVA 521 >gi|46202079|ref|ZP_00053801.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 440 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 88/182 (48%), Gaps = 27/182 (14%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 E + + QL+ D L+ N F+ S G+ Y +S++ D+D+FK IND Sbjct: 264 ERAVVQKELIQLATTDFLTEACNRRHFMQSTGAEIQRAGRYGRPMSLLMIDLDHFKHIND 323 Query: 145 NFGHPVGDKVIA--------FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 GH GD+ + L DQ ++ GR+GGEEFA A ++ A ++A Sbjct: 324 ERGHAAGDEALKAFVVMARDLLRDQDII--------GRMGGEEFAIALPETAMNPALVVA 375 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRN 253 LR + Q+ + G I ++ S G+AE C E + + RAD ALY AK GRN Sbjct: 376 ERLRIRLAGLQVPVGGGEPIKLSASFGVAE-CKVGAGEGLEACLSRADAALYRAKALGRN 434 Query: 254 RV 255 RV Sbjct: 435 RV 436 >gi|288554054|ref|YP_003425989.1| GGDEF domain-containing protein [Bacillus pseudofirmus OF4] gi|288545214|gb|ADC49097.1| GGDEF domain protein [Bacillus pseudofirmus OF4] Length = 364 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 3/161 (1%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVI 155 +++ + D L+GL N F + S I DID+FK IND+ GHP GDKV+ Sbjct: 192 DKLKHYADHDPLTGLYNVRKFSEMIREKKSAGSSYIAMLDIDHFKSINDSNGHPSGDKVL 251 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L+ L + + R GGEEF SS ++A ++A+ +R+ +E+ G Sbjct: 252 KDLATILTLYSSNHLLCARYGGEEFILCIEASSIRDAYVVADLIREKVESFPFQNIEGEK 311 Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I +TIS GIA + ++ I AD+ LY AK GRNRV Sbjct: 312 IGRVTISVGIARLEAPDQLNEAIEAADRQLYTAKTEGRNRV 352 >gi|283785239|ref|YP_003365104.1| signal transduction protein [Citrobacter rodentium ICC168] gi|282948693|emb|CBG88285.1| putative signal transduction protein [Citrobacter rodentium ICC168] Length = 484 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 103 LSRIDCLSGL---LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 L+++ SGL L A+ +S + ++++ DIDYFK INDN+GH GD+V+ + Sbjct: 313 LTQVYSRSGLYEALKRQAYPAS-----QNMTVMLLDIDYFKSINDNYGHECGDRVLCVFA 367 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + G V R+GGEEFA S +E LA +RK + + SI++T Sbjct: 368 RHIQRIVGDRGLVARMGGEEFAVVLPTSHPEEGMQLAETIRKAVALQPFDWQQ-QSIYLT 426 Query: 220 ISAG-----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +S G IA + + + ++ AD+ LY +K GRNR D N Sbjct: 427 VSIGVGNGKIAAQTVTDIFNKLMVEADECLYRSKNEGRNRTSARMDRGN 475 >gi|254520084|ref|ZP_05132140.1| GGDEF/HD domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226913833|gb|EEH99034.1| GGDEF/HD domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 566 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 9/173 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 N++ +L D L+G+ NH F +L E S++F DIDYFK ND +GH Sbjct: 189 NKLEELVNKDGLTGVYNHRYFHDALKEKIILSEKDKEHTSMIFVDIDYFKHYNDLYGHQK 248 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209 GD+V+ + D L R GGEEFA + E+EA LA+ LR IE ++ Sbjct: 249 GDEVLRSIGDILKNNIREGDIAARYGGEEFAVILPNTKEEEALSLADKLRSTIEKTKFYG 308 Query: 210 ISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261 + P +T S G++ K +I AD ALY AK +NRV ++ I Sbjct: 309 EENQPRGVLTASMGVSVYPDKAKSDVELIKSADDALYRAKFFNKNRVETYTSI 361 >gi|103487422|ref|YP_616983.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256] gi|98977499|gb|ABF53650.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256] Length = 391 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 79/156 (50%), Gaps = 5/156 (3%) Query: 104 SRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 S D LS +LN F G Y E ++ D+D FK IND+FGH GD VIA + Sbjct: 221 SETDPLSSVLNRRGFEQHAGIALLRYGETAVLIAADLDDFKTINDSFGHAAGDGVIAHFA 280 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 LV VGR+GGEEFA + + I A +R +++ + G T Sbjct: 281 AMLVDAAPADAIVGRIGGEEFAVLLPDAMLSDGRIYAEAVRTAFAAARLPV-LGVDRGFT 339 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A+R + + ++ RAD ALY AK +GRN+V Sbjct: 340 ASFGVAQRGPGDSLFDLLRRADAALYRAKAAGRNQV 375 >gi|46201460|ref|ZP_00208110.1| COG3706: Response regulator containing a CheY-like receiver domain and a GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 470 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 9/166 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G+ N + S Y L+++ DID FK IND +GHP GD Sbjct: 300 MRKLATTDMLTGVANRRQLVETGLHEFSRARRYGAHLALLMVDIDRFKAINDTWGHPTGD 359 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + I L+ + + VGR GGEEFA + A ++A LR ++++ +S Sbjct: 360 RAIQALTTAITGIIRDQDKVGRFGGEEFAVILPETEMAGALVIAERLRAAVQDTAKAVSD 419 Query: 213 -GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 + T+S G+A K+ +I RAD+ LY AK GRN+VV Sbjct: 420 CSEMVGFTVSIGVATLDPKDKSFEDLIGRADKMLYAAKDGGRNQVV 465 >gi|291566616|dbj|BAI88888.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 774 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 14/165 (8%) Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ ID L+G+ N + I G + + L D+D FK IND +GH GD V+ Sbjct: 612 IAEIDTLTGIENRYKSTEDINRLIRIAGRHKQPLCFAILDLDNFKDINDQYGHDTGDWVL 671 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SS 212 + L F VGR GGEEFA A G+S+Q+A N L+K+++ ++ + Sbjct: 672 HRFGEVLKKAFRQEDIVGRWGGEEFAVAMYGTSKQDA---MNRLQKVLDKWRLEVLVPED 728 Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 + +T S G+A+ ++YR AD LY AK++GRN+++ Sbjct: 729 NIAFSVTFSGGVAQYPEDGHDLQLLYRKADATLYEAKQAGRNQIM 773 >gi|157145747|ref|YP_001453066.1| hypothetical protein CKO_01497 [Citrobacter koseri ATCC BAA-895] gi|157082952|gb|ABV12630.1| hypothetical protein CKO_01497 [Citrobacter koseri ATCC BAA-895] Length = 367 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +R+ L+ D L+G N A + + + +++ D+D+FK+ ND +GHP GD Sbjct: 203 SRLDNLAHRDPLTGTANRRAMEKLLHNAMAQQNAFALIMLDVDFFKRYNDAYGHPAGDAC 262 Query: 155 IAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 ++ ++D L +P V R GGEEFA ++ Q+A +A ++K +E + I + +S Sbjct: 263 LSQVADILAQSVRSPEDVAARYGGEEFAVILFDATLQDAERVAARIQKALEAAAIPHPAS 322 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 S +T+S GIA + I AD ALY AK++GRNR Sbjct: 323 TVSDSVTVSQGIACSEKGKTAEQTIADADAALYRAKEAGRNR 364 >gi|170724256|ref|YP_001751944.1| diguanylate cyclase [Pseudomonas putida W619] gi|169762259|gb|ACA75575.1| diguanylate cyclase [Pseudomonas putida W619] Length = 653 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 106 IDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+GL N +A+ + ++ E L++ D+D+FK+IND++GH GDKV+ + Sbjct: 495 IDPLTGLPNRAAWSEQVEREMQAWQENGGHLAMAILDLDHFKRINDSYGHLAGDKVLKIV 554 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +DQL F+ R GGEEF +S AA +A LR IE + G + I Sbjct: 555 ADQLRKRLRPRDFIARFGGEEFVLLLAQTSPTVAAQVAEVLRAAIEACPFHF-KGERVVI 613 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T S G++ E ++ RAD ALY AK GRNRV Sbjct: 614 TASIGLSAFRSGERDDQVLKRADAALYRAKDLGRNRV 650 >gi|298682175|gb|ADI95243.1| putative diguanilate cyclase [Pseudomonas putida] Length = 270 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 14/175 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144 ++L+E NR +Q D L+GL N + +S L + N + + + DID+FK+IND Sbjct: 102 NLLQERIGRLNRDAQ---TDPLTGLGNRRSLEISLSLLEAENREFAAIALDIDHFKRIND 158 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH VGD+V+ L++ + + R GGEEF G++ AA +A LR ++ Sbjct: 159 SHGHEVGDQVLRQLAELMRRCCREGDLLCRTGGEEFLILLPGATLNVAAAVAERLRVTVQ 218 Query: 205 NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + P +TIS G+ H EP++ + AD+ALY AK+ GRNRV Sbjct: 219 DMPVE----PVGAVTISLGVTHWDGETHGEPMNA-LGEADRALYRAKQEGRNRVA 268 >gi|295703132|ref|YP_003596207.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319] gi|294800791|gb|ADF37857.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319] Length = 178 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 89/170 (52%), Gaps = 15/170 (8%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD--- 152 LS D L+GL N + L E LS + FDIDYFK ND +GH GD Sbjct: 2 LSMKDGLTGLNNRRSLDKQLEIEWKYARKEKEPLSFLLFDIDYFKAYNDTYGHIQGDECL 61 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INIS 211 K +A ++ L VF FV R GGEEF +++ EA +A +R+ +E I+ + Sbjct: 62 KEVANIAKSL--VFDESAFVARYGGEEFGILLPRANQYEAIKMAEAIRQQVEQRAIIHQA 119 Query: 212 SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259 S +TIS GI E I +I++ ADQALY AK++GRNR+ +S Sbjct: 120 SDVFKCVTISVGIMTVVPSENIQLISIVHGADQALYEAKRTGRNRISVYS 169 >gi|169342866|ref|ZP_02863897.1| GGDEF/HD domain protein [Clostridium perfringens C str. JGS1495] gi|169299123|gb|EDS81195.1| GGDEF/HD domain protein [Clostridium perfringens C str. JGS1495] Length = 563 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ NH F L NEKLS++F DIDYFK ND +GH GD+ + + Sbjct: 196 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 255 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218 L + V R GGEEFA +SE+EA +A +R +E + + P+ + Sbjct: 256 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 315 Query: 219 TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258 T+S GIA K + + AD ALY AK +NRV + Sbjct: 316 TVSVGIAVFPDKAKSELELVKCADDALYRAKFFHKNRVETY 356 >gi|121594336|ref|YP_986232.1| diguanylate cyclase [Acidovorax sp. JS42] gi|120606416|gb|ABM42156.1| diguanylate cyclase [Acidovorax sp. JS42] Length = 334 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 19/185 (10%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL------------GSYNEKLSIVFFDIDYFK 140 ++ +Y + S D L+GLLN F G + + DID+FK Sbjct: 141 VYQNYQSLLDYSERDALTGLLNRKTFEEQFSRQTGAPASPGEGEDTVRQWLAVIDIDHFK 200 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND FGH GD+V+ ++++L F + + R GGEEF + +A LR Sbjct: 201 SVNDRFGHLYGDEVLILVANRLRTQFQSQDSIFRFGGEEFVVLLRSLTLAQARQALERLR 260 Query: 201 KIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ P I HIT+S G A P+ I+ RADQALY AK+ GRN+V + Sbjct: 261 AAVQTHVF-----PQIGHITVSIGFAATQQGSPVE-ILGRADQALYYAKEHGRNQVCFYE 314 Query: 260 DIENN 264 D+ NN Sbjct: 315 DLVNN 319 >gi|70734177|ref|YP_257817.1| response regulator/GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68348476|gb|AAY96082.1| response regulator/GGDEF domain protein [Pseudomonas fluorescens Pf-5] Length = 555 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + LS DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARREGKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + + A + +++R+ ++I+ + P + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDQDAACKVLDEIRQRF--AEIHYPAQPQDLWC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ E + +AD+ALY AK GRNRV Sbjct: 497 TFSAGVVEMQEDSDSLIMASQADEALYRAKHGGRNRV 533 >gi|88812240|ref|ZP_01127491.1| putative signal transduction protein [Nitrococcus mobilis Nb-231] gi|88790491|gb|EAR21607.1| putative signal transduction protein [Nitrococcus mobilis Nb-231] Length = 504 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 11/175 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL + ++ +++R D L+G N F L + + LS+ F D+D+FK +ND Sbjct: 326 ELERTAVQLQEMARRDPLTGAYNRRYFDEMLSQRFEAATRHQQPLSLGFLDLDHFKMVND 385 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD V+A ++ + F+ R GGEEF ++ + A + +R IE Sbjct: 386 RYGHQAGDVVLAGVAKAISSRLRGDDFLARYGGEEFVLLLPNTNLELAQRILERIRAHIE 445 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRV 255 + ++ I IT+SAG A IS +I AD+ALY+AK+ GRNRV Sbjct: 446 TEEHTVAPEHMIRITLSAGAAAHMDGSRISNKLDDLIRAADRALYLAKRQGRNRV 500 >gi|221064900|ref|ZP_03541005.1| diguanylate cyclase [Comamonas testosteroni KF-1] gi|220709923|gb|EED65291.1| diguanylate cyclase [Comamonas testosteroni KF-1] Length = 536 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 11/180 (6%) Query: 85 ISGSILKELFISYNRISQLSR---IDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDY 138 + ++LK L + I++L D L+GL N A I++ + S++ DID+ Sbjct: 351 LKKAMLKGLNLLQRNITKLREDVNTDPLTGLGNRRHLEAAITAFQTQALPFSVIAIDIDH 410 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+IND FGH GD+V+ L+ + V R+GGEEF G++ + AA A Sbjct: 411 FKRINDGFGHDTGDEVLRQLARTMREVSRIDDVPCRMGGEEFLLLLPGTAPEAAAHAAER 470 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257 LR+++E ++ P HITIS G+A P I + +AD LY AK+ GRNRV+ Sbjct: 471 LRQLVEKMEMP----PVGHITISLGVAHWPDSAPDIKAVFQQADAMLYAAKRGGRNRVMV 526 >gi|146306296|ref|YP_001186761.1| diguanylate cyclase [Pseudomonas mendocina ymp] gi|145574497|gb|ABP84029.1| diguanylate cyclase [Pseudomonas mendocina ymp] Length = 355 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 13/168 (7%) Query: 101 SQLSR------IDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 SQL R +D L+ + N AF +L ++ L++V DID+FKQ ND +GHP+ Sbjct: 177 SQLERAHLAATLDSLTRVFNRHAFTRLLERALSETHKGLALVILDIDHFKQFNDQYGHPL 236 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209 GD+V+ + L + + F R GGEEF + A + A LR I+ ++ Sbjct: 237 GDRVLQHVGQLLRDLLPSGAFAARYGGEEFCVVLRDCVDLGAVLEFAEKLRNKIQALRVK 296 Query: 210 ISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + IT S G A + + T++ RAD ALY AK+SGRN+V Sbjct: 297 VRRTDQVLDSITASFGCALAEADDSLETLLTRADDALYQAKRSGRNQV 344 >gi|108757503|ref|YP_629777.1| FHA domain/GGDEF domain-containing protein [Myxococcus xanthus DK 1622] gi|108461383|gb|ABF86568.1| FHA domain/GGDEF domain protein [Myxococcus xanthus DK 1622] Length = 354 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 81/159 (50%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F+ L Y L+++ FDID+FKQIND GH GD V+ L+ Sbjct: 197 DGLTGINNKRYFLEYLEKEMGRSTRYQRTLTLMMFDIDHFKQINDVHGHLAGDYVLRELA 256 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + R GGEEFA +A + A +R++IE + I +T Sbjct: 257 QSIKRLVRREQCFARYGGEEFAVVLPEDGPDKARLFAEKIRRLIEGKSF-VYDDKEIPVT 315 Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256 IS G+AE+ EP + I AD LY AKKSGRNRVV Sbjct: 316 ISIGVAEQTSDMLEP-THFIKVADANLYKAKKSGRNRVV 353 >gi|310643269|ref|YP_003948027.1| diguanylate cyclase with pas/pac sensor [Paenibacillus polymyxa SC2] gi|309248219|gb|ADO57786.1| Diguanylate cyclase with PAS/PAC sensor [Paenibacillus polymyxa SC2] Length = 327 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 12/165 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF----ISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++ D L+GL N F + SL S+ E S++ DID FK IND +GHPVG Sbjct: 160 QLETMASTDPLTGLKNRRYFQDQLLVSLASFQETGIPFSLLIIDIDRFKSINDTYGHPVG 219 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ L++ L + V R GGEEF G+ ++EA A R + + Sbjct: 220 DLVLTNLAELLQSMSREMDIVARYGGEEFVIILPGNDQEEAIRTAERYRSMTASRDWGEY 279 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S IT+S G+A + +I+++AD ALY +K GRNRV Sbjct: 280 S-----ITVSIGVATVTQADTEQSIVHQADFALYASKSGGRNRVT 319 >gi|322420086|ref|YP_004199309.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] gi|320126473|gb|ADW14033.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] Length = 319 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 119/259 (45%), Gaps = 27/259 (10%) Query: 18 NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77 ++ +P T ++ + S+ A A + + + PF L+ I S V Sbjct: 65 RIKEHNPDTQVVIMTSHASLDSALTALRAGAYDYLV--KPFESLDLI-----SAVAGRAA 117 Query: 78 ISLLLGYISGSILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSLGS------ 124 L + +L++L + + + +R D L+ L NH F +L Sbjct: 118 EKARLVAQNRELLEQLTKANEELQEANRALKEMAIRDGLTSLYNHRYFQEALAREVVRSK 177 Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 Y+++ +VFFD+D FKQ ND GHP GD+++ L+ +++ R GGEEF Sbjct: 178 RYDKRCCLVFFDVDNFKQYNDTHGHPEGDRLLKGLARIIMLRSRGCDLAARYGGEEFVLL 237 Query: 184 ALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPIS---TIIYR 239 + ++ A +A D+R ++ E+ + P +T+S G+A C E S T++ Sbjct: 238 LPETGKEAALTVAEDMRVRVAEHPFAGRETQPLGTVTVSIGVA--CFPEDGSDAATLLCC 295 Query: 240 ADQALYVAKKSGRNRVVCF 258 ADQ LY AK SG+NRV Sbjct: 296 ADQLLYQAKNSGKNRVAAM 314 >gi|119898419|ref|YP_933632.1| GGDEF-domain-containing protein [Azoarcus sp. BH72] gi|119670832|emb|CAL94745.1| GGDEF-domain containing protein [Azoarcus sp. BH72] Length = 471 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 13/166 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G N F+++L S L+++ DID+FK IND GHP GD Sbjct: 303 LRRLAATDPLTGASNRRQFMATLASEWARARRERAPLALLALDIDHFKHINDRHGHPAGD 362 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + +GR+GGEEFA G+ +A +A +R +E ++I Sbjct: 363 HALKTFVSAAAGLLRPGDVIGRIGGEEFAIVLPGTQAADAHGIAERIRHGVEALALDIDG 422 Query: 213 GPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + +T+S G+A C EP ++ AD+ LY AK +GRNRV Sbjct: 423 VP-VALTVSVGVAVSGPSC-TEP-GDLLKEADRRLYEAKNAGRNRV 465 >gi|254785900|ref|YP_003073329.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237683439|gb|ACR10703.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 307 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++G+ N +A+ ++ + +LS++ DID+FKQ+NDN+GH GDK++ L+ Sbjct: 150 DPVTGIGNRAAWDAAYQREVKLATRHGTELSLLVIDIDHFKQVNDNYGHQQGDKLLKHLA 209 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF ++ ++AA+ A +R + S I+ + + Sbjct: 210 KTLQDSLRETDQVFRYGGEEFVVILNNTNAKDAALTAERIRLQVAMSPALIND-QEVFAS 268 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A C + +++ RAD A+Y AK++GRN+V C Sbjct: 269 VSIGVAHLCADDDPTSLFNRADCAMYAAKRAGRNKVSC 306 >gi|296274592|ref|YP_003657223.1| extracellular sensor-containg diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296098766|gb|ADG94716.1| diguanylate cyclase with extracellular sensor [Arcobacter nitrofigilis DSM 7299] Length = 709 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 104/226 (46%), Gaps = 23/226 (10%) Query: 48 IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK----------ELFISY 97 IF ++ + G++Y LV +S I +I +L+ Y + I+K ++ + Sbjct: 488 IFSKWVPIKYQKGIDYDLVWKIS--IGAILFIILVVYWNRKIIKTNRLLQEAKKDIEVKN 545 Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + +L+ D L+ L N ++ +N I DIDYFK++ND FGH Sbjct: 546 KELEKLAITDKLTNLYNRRKLDELLQHELNRSERFNHTFGIAILDIDYFKKVNDTFGHQA 605 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDKV+ LS+ L T FVGR GGEEF S + L +R IEN Sbjct: 606 GDKVLIELSNILKTHIRTTDFVGRFGGEEFVIICPESQKDGVYNLMESIRLDIENYTFKD 665 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IT S G+ + +++ RAD ALY AK GRNRVV Sbjct: 666 IG----KITTSFGVTLSKENDTSESLLKRADIALYEAKSLGRNRVV 707 >gi|114562009|ref|YP_749522.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114333302|gb|ABI70684.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 627 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 20/175 (11%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQ 141 I K+LF +L+ D L+ L N F+ S + SI+ FD D+FK Sbjct: 458 IRKQLF------RRLALTDELTKLANRRDTYSQGHYFLKSSKLSGKPFSIISFDADHFKM 511 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND GH +GDKV+ L+ + VGR+GGEEF + +A +AN L + Sbjct: 512 VNDTLGHDMGDKVLVKLASISASMMRDTDVVGRVGGEEFLILLPNIDKTKAIEIANRLIE 571 Query: 202 IIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I + +QI P++H T+SAG+A ++E +S ++ +AD+ALY AK +GRN Sbjct: 572 TIADYDWTQI----APNLHQTVSAGVASYSNEEDLSPLLLKADKALYSAKAAGRN 622 >gi|24215628|ref|NP_713109.1| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] gi|24196785|gb|AAN50127.1| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] Length = 317 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 100/211 (47%), Gaps = 34/211 (16%) Query: 82 LGYISGSILKELFISYNRISQLS--------------RIDCLSGLLNHSAF-------IS 120 L Y++G + ++ S +ISQL+ D L+ L N F I Sbjct: 106 LVYVTGRDITDVIKSNRKISQLAVKLKETNDRLFEQASTDPLTKLKNRRMFNEELNNLIH 165 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + + LS++ D D+FK ND FGH GDKV+ L+ L F + R GGEEF Sbjct: 166 ACDKESHPLSLLMIDADHFKDYNDKFGHIAGDKVLVELASILTKTFRKKDVLARYGGEEF 225 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--------AERCHKEP 232 AA +SE EA +A L + + S +TIS GI ++ + E Sbjct: 226 IAALPNTSEPEANQIAERLVQTVREFSWEKRS-----VTISVGITTYNFNPTSKSINSEY 280 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + +I +AD+ALY +K SGR+R+ FS ++N Sbjct: 281 LLNLIEQADKALYCSKVSGRDRITHFSWVQN 311 >gi|332525658|ref|ZP_08401809.1| uroporphyrin-III C/tetrapyrrole methyltransferase [Rubrivivax benzoatilyticus JA2] gi|332109219|gb|EGJ10142.1| uroporphyrin-III C/tetrapyrrole methyltransferase [Rubrivivax benzoatilyticus JA2] Length = 839 Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIN 143 + F+ R S D L+GL N+ A ++ + + + D+D FK +N Sbjct: 396 RRAFVERRRYRWQSEHDGLTGLYNYQQVRKLGEAAFAAACRRGQPFTAIVADVDRFKGVN 455 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+FGH GD + L + V G GR GG+EF + Q A+L LR+ I Sbjct: 456 DHFGHAAGDAALRSLGGWIAEVVGARGIAGRSGGDEFTILLKDDAAQAEALL-RQLRERI 514 Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 E ++ G ++H +IS+G+ E E + +++ ADQALY AK SGRNR+V Sbjct: 515 EPIEV---FGKTVHFSISSGVCEAGEGIETLEQLVHEADQALYRAKHSGRNRIV 565 >gi|330901520|gb|EGH32939.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330977287|gb|EGH77242.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 689 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ + + E L + D+D+FK+IND +GH GDKV Sbjct: 527 QKALIDPLTGLPNRAAWGERLEQEMARWQEDKNSLLVCILDLDHFKRINDGYGHLAGDKV 586 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ L F+ R GGEEF +S L ++LR +E+ + G Sbjct: 587 LKIVANVLSKRLRADDFMARFGGEEFVMLLPATSPAAGLTLLDELRAAVESCPFHF-KGE 645 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNR+ Sbjct: 646 RVTITVSIGLTAFRPSEKSDTAIKRADQALYKAKENGRNRI 686 >gi|326318358|ref|YP_004236030.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375194|gb|ADX47463.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 357 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 22/234 (9%) Query: 41 TVIFIANIFLFYIGL----------TPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90 T + + +F+FYIG+ P L + ++ ++ + Y GS+L Sbjct: 127 TPVMLLALFVFYIGMYELSRRYGAQAPLGDLGLSVTHAFNVAVVFAMAAYTARYYYGSVL 186 Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 + + R+ + D L+GL N I+ + ++V DID+FK+IN Sbjct: 187 R----AERRLEDQAATDPLTGLSNRRRLASLAQERIAQARQAGQPTAVVIADIDHFKRIN 242 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+V+ +++ L + R GGEEF + +A LA +R + Sbjct: 243 DTHGHEAGDRVLVHVAELLARSSRARDLLARWGGEEFLVVMPTCALADAQALAERMRAAV 302 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +I ++S G+A+ E + I RAD ALY +K +GRNRV Sbjct: 303 ADRPAR-HGALAIPASLSLGVAQLRSGESLEAAIARADGALYASKHAGRNRVTT 355 >gi|88797521|ref|ZP_01113110.1| response regulator receiver domain protein (CheY-like) [Reinekea sp. MED297] gi|88779693|gb|EAR10879.1| response regulator receiver domain protein (CheY-like) [Reinekea sp. MED297] Length = 560 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 83/172 (48%), Gaps = 11/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 K L IS + LSR D L+GL N A +S Y +++ D+D FK IN Sbjct: 380 KALSISNGELKTLSRQDPLTGLYNRRAMLPMIEDAVSEYQRYELPSTLMLLDLDDFKLIN 439 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH +GD V+ ++ L V + R GGEEF A G +EA +RK I Sbjct: 440 DQLGHNIGDAVLKSVAYVLQSVSRRTDTIARWGGEEFLILAKGIHAEEAFRYLEKVRKQI 499 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 SQ I P IT SAG+ E T+I ADQA+Y AK +G++R Sbjct: 500 RESQ-TIDDRP---ITFSAGVCEVQANHTADTLIAEADQAMYDAKLNGKDRT 547 >gi|239906409|ref|YP_002953150.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239796275|dbj|BAH75264.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 340 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 117/254 (46%), Gaps = 26/254 (10%) Query: 24 PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL--- 80 PH +++ F + +A+ +FI L L+P L+ I E ++V+ + L Sbjct: 92 PHNAVVWSMHGFCLLLASTLFIRAAILCAGWLSPGSALDAIGPELTAIVLFGNMLCLDAL 151 Query: 81 -----LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128 LL ++ L + I + S+ID L+G N S +S S E Sbjct: 152 ILCFPLLDFMDAQ--SRLSQATQEIIERSKIDVLTGAYNRSHMQSRLHHHVSRCSSSGET 209 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 S++ FD+D+FK IND +GH +GD+V+A + Q+ + R GGEEF + Sbjct: 210 FSLILFDLDHFKAINDTYGHVIGDRVLAQVGSQVKSSLRRYDELFRFGGEEFLVILPDTD 269 Query: 189 EQEAAILANDLRKIIENSQINISSGPSI----HITISAGIAERCHKEPISTI-IYRADQA 243 A +A LR+ I N + GP+I IT S GIA + I + + D A Sbjct: 270 ANHACDIAERLRQEIANLLFD---GPNISEQFRITSSFGIASTTKATRSADILLQQTDAA 326 Query: 244 LYVAKKSGRNRVVC 257 LY AK GRN +VC Sbjct: 327 LYKAKAQGRN-MVC 339 >gi|298529787|ref|ZP_07017190.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] gi|298511223|gb|EFI35126.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] Length = 427 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISS---------LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 I +L+ D L+GLLN +F +S G+ N L + DID+FK+ ND +GH Sbjct: 264 IRELAEKDFLTGLLNRRSFFNSGEKLFANALRGNLN--LVVSMMDIDHFKKCNDKYGHDA 321 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+VI F++D+L V R GGEEF + + + +R IENS I Sbjct: 322 GDEVICFVADRLKSSLRQSDLVARFGGEEFCVVGVNMHSENITEVFEKIRADIENSVIR- 380 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S + +T+S G+ K + +I AD LY AK GRN+V Sbjct: 381 SGEHEMRVTVSIGVCSTL-KSSLEEMITCADDMLYKAKNQGRNQV 424 >gi|254503168|ref|ZP_05115319.1| hypothetical protein SADFL11_3207 [Labrenzia alexandrii DFL-11] gi|222439239|gb|EEE45918.1| hypothetical protein SADFL11_3207 [Labrenzia alexandrii DFL-11] Length = 722 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 14/179 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKL-SIVFFDIDYFKQIN 143 K L + + +++ ID L+G++N AF+ + + ++L + V DID FK+IN Sbjct: 539 KALMQAKINLERIASIDDLTGIMNRRAFLEAANTEVARYRRTQRLFTAVMIDIDNFKRIN 598 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202 D GH VGD+V+ + + GR+GGEEF ++ ++A +++ LR KI Sbjct: 599 DRCGHAVGDEVLKKFTGIIGGALRAVDVFGRVGGEEFCMILHNTTMEDAMLVSQRLREKI 658 Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 +E Q N+ IT S G+A ++ ST++ RAD ALY AK++GRNR V F+ Sbjct: 659 VEECQFDNVDQA----ITCSMGLASIAREDVEFSTLMQRADTALYTAKETGRNRCVEFT 713 >gi|88859722|ref|ZP_01134362.1| GGDEF domain protein [Pseudoalteromonas tunicata D2] gi|88818739|gb|EAR28554.1| GGDEF domain protein [Pseudoalteromonas tunicata D2] Length = 293 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVG 151 ++++LSRID L+GL F+ + Y K SI+ D+D+FK++ND FGH G Sbjct: 124 KLTELSRIDSLTGLFLRRYFLELAQNEFDLYARKKQPFSILMLDLDFFKRVNDQFGHACG 183 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ + + V R GGEEF + +EA +A + N ++ Sbjct: 184 DKVLICFAQLMKESLRKTDVVARWGGEEFIVLLPNTRLKEAVEIAKLINMHTRNKKMACE 243 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254 + +I IT+S G+ E + E + T+I +AD+ LY AK +GR+R Sbjct: 244 TN-TITITVSIGVIEMHDEFEHLQTMITQADELLYQAKNNGRDR 286 >gi|313200860|ref|YP_004039518.1| diguanylate cyclase [Methylovorus sp. MP688] gi|312440176|gb|ADQ84282.1| diguanylate cyclase [Methylovorus sp. MP688] Length = 398 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 19/239 (7%) Query: 40 ATVIFIANIFLFYIGLTPFYGLEYIL------VENLSLVIISITISLLLGYISGSILKEL 93 A + F + + Y G++ + IL N+ +++ + +L+ + G ++ Sbjct: 158 AVIFFTMALLMAYRGISALFADGPILDHPMGWQPNVLTLLVGSMLQMLVTF--GLVMMVS 215 Query: 94 FISYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEK-LSIVFFDIDYFKQINDNF 146 F + + Q + D L+G+LN ++S G N+ L ++ DID FK IND + Sbjct: 216 FRKSSELEQYAHYDALTGILNRRGLEEAARRLASFGRRNDSGLVMLLLDIDLFKHINDRW 275 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GHPVGD+V+ L+ Q+ + R GGEEF GS+EQE A +R+ +E+ Sbjct: 276 GHPVGDEVLRQLTRQIKTQTREEDVLARYGGEEFCLLLPGSTEQEGIQCAERIRQSVES- 334 Query: 207 QINISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + I GP ++ T+S GI R +++ AD ALY AKK+GRN+ V +S + Sbjct: 335 -LRIVQGPVTLQFTVSVGITCARLAGYDFRSLLASADAALYAAKKAGRNQGVAYSSLSG 392 >gi|284028326|ref|YP_003378257.1| diguanylate cyclase [Kribbella flavida DSM 17836] gi|283807619|gb|ADB29458.1| diguanylate cyclase [Kribbella flavida DSM 17836] Length = 466 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 21/202 (10%) Query: 72 VIISITI--SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 V IS+T +LLLG + E + + ++L R+D + + + E + Sbjct: 225 VPISLTAQRALLLGQL------ESEVQTDPKTKLGRVDWWRQRTEE--MLRTARTQREPM 276 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DID+FKQ+ND GH VGD+ + ++ L +GR GGEEF A + Sbjct: 277 AVLLIDIDHFKQVNDRHGHLVGDEALRAVATILRSAIRAKDVIGRFGGEEFVIALPDTDG 336 Query: 190 QEAAILANDLRKIIENSQI-----NISSGPSI-----HITISAGIAE-RCHKEPISTIIY 238 +AA+ A+ LR + S + + P + H+T+S G+A + ++ Sbjct: 337 TDAAVTADRLRSAVAASPLAAMCAGVLDDPELDPDTFHLTVSVGVAVYPSDGHTVDELLR 396 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 RAD+A+Y AK +GR+RV +D Sbjct: 397 RADRAMYAAKAAGRDRVRLAAD 418 >gi|117618033|ref|YP_857544.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559440|gb|ABK36388.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 352 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 6/190 (3%) Query: 72 VIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYN 126 + +T + G+ ++ + +L +S+LS D L+ L N A + +L Sbjct: 160 ITAQLTADAMPGWHIVTLRDIHDLHCMIEEVSRLSCTDPLTELGNRRAAGQQLQALWLQG 219 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 E S++ DID+FKQIND +GHP GD + ++ + + R GGEEF G Sbjct: 220 EPFSLILCDIDHFKQINDRYGHPAGDAALCEVARIMTRQLQPAEHLARWGGEEFLLILPG 279 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 ++ A LR+ + G S +T+S G A + + I +++ AD+ALY Sbjct: 280 VDAEQVVERAEQLRRQFVGHVVTW-EGQSFSLTMSLGCATQEEGQGIDSLLLVADKALYQ 338 Query: 247 AKKSGRNRVV 256 AK +GRNRVV Sbjct: 339 AKSNGRNRVV 348 >gi|126462830|ref|YP_001043944.1| response regulator receiver modulated diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029] gi|126104494|gb|ABN77172.1| response regulator receiver modulated diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029] Length = 461 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 13/168 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ +D L+GL N + L + +E+ +++ D+D FK +ND +GH GD V Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERARAADERFAVMVIDLDRFKSVNDRWGHGAGDAV 346 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSG 213 + ++ +L + R+GGEEF A E A +A LR+ +E + + G Sbjct: 347 LVAVARRLHANLRPGDLIARIGGEEFLVALPDVPRPEDAHAVAERLREAVEEEPVPLPGG 406 Query: 214 PSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+ +TIS G+A EP+ ++ RAD AL +AK +GRN+V Sbjct: 407 GSLRVTISVGLALSPDGAGRRAEPVDAVVQRADSALLLAKSAGRNQVT 454 >gi|307717794|ref|YP_003873326.1| hypothetical protein STHERM_c00770 [Spirochaeta thermophila DSM 6192] gi|306531519|gb|ADN01053.1| hypothetical protein STHERM_c00770 [Spirochaeta thermophila DSM 6192] Length = 298 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 10/194 (5%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------ 122 ++L ++I + LL+ +I EL R+ +LS D L+GL N F L Sbjct: 104 VALTGVTIGVMLLIRMYRMTI-SELSEKQRRLIELSITDDLTGLYNARYFYRRLEEEIAR 162 Query: 123 -GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 Y LS++F D+D FK+ ND +GH GD+V+ ++ L R GGEEF Sbjct: 163 SRRYGRPLSLLFIDLDDFKRFNDTYGHLAGDRVLRKVARVLRESLRENDSAYRYGGEEFV 222 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 + +E + A +R+ IE + + +T S G+ E + I + RAD Sbjct: 223 IILPETGAEEGCVAAERVRRRIEVC--SFRGKEKVKVTASVGVVEYREGDAIEDFVRRAD 280 Query: 242 QALYVAKKSGRNRV 255 QA+Y AK G+NR+ Sbjct: 281 QAMYKAKAEGKNRI 294 >gi|260777191|ref|ZP_05886085.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450] gi|260606857|gb|EEX33131.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450] Length = 603 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 94/163 (57%), Gaps = 7/163 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ +L R D L+G+LN A ++ + N I D+D+FKQINDN+GH +GD V Sbjct: 434 SQLVKLVREDPLTGILNRRALVNHAEDIRRLNASSCICMMDLDHFKQINDNYGHAIGDSV 493 Query: 155 I-AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 + F + + + T +F GRLGGEEFA + ++AA LA +R +E + ++ S Sbjct: 494 LKTFCTLVMSEIRDTDIF-GRLGGEEFALILPETQLEDAASLAERIRSRVELQLVASLRS 552 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G+ E + + + AD+ LY+AK+SGRN++ Sbjct: 553 VVCSKVTVSIGVVEWL-DDDFAKALSSADKQLYMAKESGRNQI 594 >gi|229491123|ref|ZP_04384951.1| diguanylate cyclase/phosphodiesterase [Rhodococcus erythropolis SK121] gi|229321861|gb|EEN87654.1| diguanylate cyclase/phosphodiesterase [Rhodococcus erythropolis SK121] Length = 522 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 103/188 (54%), Gaps = 19/188 (10%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFK 140 ++L+++ + + + + D L+ L N +AF S++ +Y N ++ D+D FK Sbjct: 332 ALLQQISAAQDELRYRAHHDPLTELANRAAFDEHFASAIENYRHTNSDWVLMLVDLDDFK 391 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 QIND +GHP GD+++ L+ +L FV R GG+EF G+ + +A ++A R Sbjct: 392 QINDRYGHPAGDRLLVALTARLREAVPEGAFVARFGGDEFTVLLQGTID-DAVVVA---R 447 Query: 201 KIIENSQINISSGPSIHITISAGIAE------RCHKEPIS--TIIYRADQALYVAKKSGR 252 +I++ + + ++ S+ + S G+A EP+S T++ +AD A+Y AK+SG+ Sbjct: 448 RIVDALRSDQTADTSVSVGASVGVAHFESAQFEFGDEPLSAHTLLRQADAAMYEAKRSGK 507 Query: 253 NRVVCFSD 260 VV + D Sbjct: 508 GAVVVYGD 515 >gi|120613403|ref|YP_973081.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gi|120591867|gb|ABM35307.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 403 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 16/183 (8%) Query: 93 LFISYNRI----SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 +F++ +R +++ D L+ + N A I++L E LS++ DID+FK+ Sbjct: 205 IFMARDRADAANERMAARDPLTDVPNRRATIAALDRCVAQAVRSGEPLSVMMLDIDHFKR 264 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND GH GD+V+ + D L + +GR GGEEF + A +LA +LR Sbjct: 265 INDGLGHLAGDQVLCGVVDVLGERLRSQDLIGRYGGEEFLVLLPRTPLAGAQVLAGELRA 324 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCF 258 +E + +G ++ +T+S G+A EP ++ AD+A+Y AK+SGRN+V Sbjct: 325 AVEQAHFEF-AGRTVPVTLSIGVAGGV-LEPGDRWDGLVAAADEAMYRAKRSGRNQVATT 382 Query: 259 SDI 261 +++ Sbjct: 383 AEV 385 >gi|260768564|ref|ZP_05877498.1| GGDEF domain protein [Vibrio furnissii CIP 102972] gi|260616594|gb|EEX41779.1| GGDEF domain protein [Vibrio furnissii CIP 102972] Length = 336 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 8/164 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151 N +S L+ D L+G N + S+ + N L ++ D+DYFKQ+ND FGH G Sbjct: 157 NSLSYLASRDSLTGAHNRLSLSSAFNHFEQHKDDNSSLCLLIIDLDYFKQVNDEFGHDTG 216 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ + L V G R+GGEEF +A + LR I+ N Sbjct: 217 DKVLIETTQLLAQVVGDENLF-RIGGEEFCVTLFDQGLTQAERVGERLRGIVGQHLYNYR 275 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I +T+S GI E + +S ++ AD LY AKK+GRN+V Sbjct: 276 N-QRIALTLSVGICEYRDGDNLSDLLKLADVELYRAKKNGRNQV 318 >gi|296283340|ref|ZP_06861338.1| diguanylate cyclase [Citromicrobium bathyomarinum JL354] Length = 330 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 18/181 (9%) Query: 91 KELFISYNRISQLSR----------IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDID 137 +EL + NRI +L R +D L+G+ N A I L + + DID Sbjct: 141 RELSNASNRIDRLQRDLDEARNKALVDELTGIPNRRATRATIQDLEIRKVRYCLGLIDID 200 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILA 196 +FK IND +GHPVGD+ + +++ L +P V R GGEEF A + +++ A +A Sbjct: 201 HFKAINDTYGHPVGDRALKLVAEALSESL-SPWPVARWGGEEFLVIAEVADAKKLAERVA 259 Query: 197 NDLRKIIE-NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + E N ++ + P IT SAG+A + E + RAD ALY AKK+GRN V Sbjct: 260 EAKETLAERNLKLRETDEPMGPITFSAGVA--VNSETSDETLRRADNALYEAKKAGRNTV 317 Query: 256 V 256 + Sbjct: 318 L 318 >gi|158421902|ref|YP_001523194.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571] gi|158328791|dbj|BAF86276.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571] Length = 568 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 88/169 (52%), Gaps = 10/169 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R++ L+R D L+GL N F L + L ++ D+D+FK ND GH Sbjct: 387 GRLTALARTDGLTGLANRRTFDVQLSEDWVRTRETGQPLGVLMIDVDHFKPYNDTLGHLA 446 Query: 151 GDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+ + ++ L+ V GTP V R GGEEF G+ A +A D+R+++E +I Sbjct: 447 GDEALRAVARMLIAAVAGTPYLVARYGGEEFVVLMPGAGRDAAEAIAQDVRRLVETLEIV 506 Query: 210 ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 S +T+S G+A E S ++ ADQALY AK +GRNRVV Sbjct: 507 HPSAAYRRLTVSVGVAVAMPLEGDSPDALLAAADQALYEAKAAGRNRVV 555 >gi|328470024|gb|EGF40935.1| hypothetical protein VP10329_04472 [Vibrio parahaemolyticus 10329] Length = 409 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 10/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+ LS +D L+GL N A ++ N +SIV D+D FK IND +GH GD Sbjct: 229 INDLSHLDALTGLYNRRAMEVIVPNLVNQAREKNTPISIVMTDVDDFKAINDQYGHTTGD 288 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+A ++ R GG+EF L ++E A A +R+ IE ++ Sbjct: 289 SVMATIATIFKQTLPESACTVRFGGDEFMIVLLANAENAKA-YAELVRRSIERETSLLAF 347 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T+S GI+E + + + RAD+ALY +K +GRN+V F D Sbjct: 348 KN--QVTMSFGISELMPNDSLQDALTRADEALYCSKHTGRNQVTTFQD 393 >gi|254457111|ref|ZP_05070539.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207085903|gb|EDZ63187.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 415 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 7/163 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+ + D L+GL N F ++ Y E+ ++ DID FK IND +GH +GD Sbjct: 250 ITNHANRDFLTGLYNRRYFFQNMQEYIEDTKESGEQFAVSMIDIDNFKHINDTYGHDIGD 309 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KVI +S+ L V R GGEEF ++ A+ + LR+ +E I + Sbjct: 310 KVITSISEILRTNTSYRDIVARFGGEEFCVVLKNINKYSASDILERLRQEVEKFNFTIDA 369 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 SI TIS G++ + + I +AD L+ AK++G+NR+ Sbjct: 370 NKSIKFTISIGVSIHDDDDTLEETINQADMMLHGAKQNGKNRI 412 >gi|158424750|ref|YP_001526042.1| GGDEF domain-containing protein [Azorhizobium caulinodans ORS 571] gi|158331639|dbj|BAF89124.1| GGDEF domain protein [Azorhizobium caulinodans ORS 571] Length = 506 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 83/167 (49%), Gaps = 13/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 + QLS D L+GL N F + + LS+V D D+FK +ND FGH GD Sbjct: 331 LEQLSVTDFLTGLANRRRFDEVVQREFRRAVRTDGWLSVVIIDADHFKALNDRFGHSAGD 390 Query: 153 KVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + + ++ + +G RLGGEEFA +S A L +R+ +E N Sbjct: 391 ETLKMIATAISSCARRASDLGARLGGEEFAIVLPDTSAAAAYELTERIRRTMEAHAFNPD 450 Query: 212 SGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P+ T+SAGIA +R E + +I ADQALY AK +GRNR Sbjct: 451 GPPA--TTLSAGIASTKDRPAPESVRALIEAADQALYRAKNAGRNRT 495 >gi|107027511|ref|YP_625022.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia AU 1054] gi|116693777|ref|YP_839310.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia HI2424] gi|105896885|gb|ABF80049.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia AU 1054] gi|116651777|gb|ABK12417.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia HI2424] Length = 313 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 13/182 (7%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +E + ++ + + D L+G+ N F + LG Y LS++ FD+D+FK Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFARWQRYGGDLSVLLFDLDHFKT 194 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH GD V+ + ++ + GR GGEEFA ++ EA +A+ +R+ Sbjct: 195 INDRFGHAAGDAVLRETARRVASIVRAQDTFGRFGGEEFALLLPCTNLDEAMRVADKVRE 254 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258 I + ++ + G S+ +T S G C K T ++ AD ALY AK+ GR+R V + Sbjct: 255 AIGSMPVD-AEGVSVPVTASVGGT--CAKAGALTCDVLVNEADAALYRAKRLGRDRSVAY 311 Query: 259 SD 260 +D Sbjct: 312 AD 313 >gi|323529618|ref|YP_004231770.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001] gi|323386620|gb|ADX58710.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001] Length = 777 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 91/170 (53%), Gaps = 16/170 (9%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFG 147 F+ ++++QL+ D L+GL N AF++ + ++S +F DID FK +ND FG Sbjct: 189 FLLEDQLAQLAATDPLTGLQNRRAFVAQAERRLADVARGGQVSAIFVDIDNFKSLNDRFG 248 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMF--VGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 H VGD +A V++ GT V R+GGEEFA + G A LA LR I Sbjct: 249 HAVGD--LALRQVAQVLLDGTTHGDSVSRIGGEEFAVLS-GEDLAGALRLAERLRGAIAA 305 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + P ++T S G+AE E I ++ RAD+AL AK SGRNRV Sbjct: 306 LER-----PDGNLTASFGVAEHRGGENIMVLLDRADEALLRAKHSGRNRV 350 >gi|262165779|ref|ZP_06033516.1| GGDEF domain protein [Vibrio mimicus VM223] gi|262025495|gb|EEY44163.1| GGDEF domain protein [Vibrio mimicus VM223] Length = 352 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 117/264 (44%), Gaps = 30/264 (11%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70 +W C F P F I+ S F+ +++ I G+ Y ++N Sbjct: 98 VWSC-------FVPILFYIFTSARFAFLTSSLFLILQ-----------SGIVYWQLQNEP 139 Query: 71 LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125 L+ S+ + L YI ++ ++ R + L+ D L+ N + +S + Sbjct: 140 LISWSVLLHLSFAYIGIWVVSHVYEQNRRKIENSLLYLASRDPLTSAHNRLSLTTSFQHF 199 Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + LS++ D+D+FK IND FGH GDKV+ + L V G R+GGEEF Sbjct: 200 EQFNDQTTLSLLVIDLDFFKSINDQFGHDTGDKVLIETTRLLAQVVGDNNLY-RIGGEEF 258 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 S ++A + LR II + I + +TIS G+ E + ++ ++ A Sbjct: 259 CVTLFDQSLEQAERVCERLRAII-SQHIFAFGDKRVQVTISIGVCEYQPGDQLNDLLKFA 317 Query: 241 DQALYVAKKSGRNRVVCFSDIENN 264 D LY AKK+GRN+V F + Sbjct: 318 DIELYRAKKAGRNQVRLFKHAQTQ 341 >gi|119471478|ref|ZP_01613919.1| hypothetical protein ATW7_16675 [Alteromonadales bacterium TW-7] gi|119445577|gb|EAW26862.1| hypothetical protein ATW7_16675 [Alteromonadales bacterium TW-7] Length = 617 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 69/185 (37%), Positives = 94/185 (50%), Gaps = 15/185 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQI 142 L+EL + QL+ D L+G N F L S E+ LSI+ DID+FK I Sbjct: 436 LRELEEKNRELEQLNTEDALTGAKNRRFFDKKLVMELRRSRREQTPLSIIMIDIDHFKTI 495 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD VI +D + P+ V R GGEEF ++ Q A +A +R Sbjct: 496 NDTYGHLSGDNVIKATADIIKRFLKRPLDEVARYGGEEFVILLPNTANQGAFDIAEQIRL 555 Query: 202 IIENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + + I +G I TISAG IA+ + + T AD+ALY AK+ GRN+VV Sbjct: 556 DIYQNPV-IVAGAEIKFTISAGVYTFIADDINTPELFTEC--ADKALYSAKQQGRNQVVN 612 Query: 258 FSDIE 262 F I+ Sbjct: 613 FETIQ 617 >gi|78776421|ref|YP_392736.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78496961|gb|ABB43501.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM 1251] Length = 539 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 11/170 (6%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNF 146 ++ + ++ D L+ L N + L + LS++F DIDYFK +ND + Sbjct: 372 YVKIKELEHMASTDALTKLFNRTKLNDVLEKEMALSRTVPSPLSVIFLDIDYFKAVNDTY 431 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+V+ +++ + R GGEEF + EA++L LR +E Sbjct: 432 GHDAGDRVLINIANIITSSIRAGDIAARWGGEEFMIILQATPVSEASVLGEKLRARVEGH 491 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ITIS G+ E + E + I R D+ALY AK+ GRN+++ Sbjct: 492 LFETVG----KITISLGVTEYINAESEESFIKRVDEALYEAKERGRNKII 537 >gi|30023444|ref|NP_835075.1| GGDEF family protein [Bacillus cereus ATCC 14579] gi|229130662|ref|ZP_04259618.1| GGDEF domain protein [Bacillus cereus BDRD-Cer4] gi|29899005|gb|AAP12276.1| GGDEF family protein [Bacillus cereus ATCC 14579] gi|228653001|gb|EEL08883.1| GGDEF domain protein [Bacillus cereus BDRD-Cer4] Length = 352 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 99/208 (47%), Gaps = 26/208 (12%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRI----------SQLSRIDCLSGLLN 114 L++ +V + + S++ GYI+ FIS N + Q + ID L+GL N Sbjct: 150 LIKEFHIVGLYLISSIITGYIT-------FISANYVLQSNELFQTMKQYATIDALTGLGN 202 Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 F IS+ N+ L ++ DID+FK +ND +GHP GD+V+ + L + Sbjct: 203 VRQFDLEMNRHISNKHLKNDSLCLLLIDIDHFKHVNDTYGHPAGDEVLKQVGHILREMSA 262 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 P V R GGEEFA + R +E + G I IT+S G++E Sbjct: 263 FPDLVFRKGGEEFALLIPRKGIAYGIHVGEQTRIAVEKHSFELLDGTKIKITVSVGVSE- 321 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ I AD ALY +K++GRN+V Sbjct: 322 -YEGASEQFIQAADDALYYSKRNGRNKV 348 >gi|228903893|ref|ZP_04068008.1| GGDEF domain protein [Bacillus thuringiensis IBL 4222] gi|228968547|ref|ZP_04129534.1| GGDEF domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228791151|gb|EEM38766.1| GGDEF domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228855802|gb|EEN00347.1| GGDEF domain protein [Bacillus thuringiensis IBL 4222] Length = 352 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 18/204 (8%) Query: 65 LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118 L++++++V + + S++ GYI+ +L+ ELF + Q + +D L+GL N F Sbjct: 150 LIKDINIVGLYLISSIITGYITFISANYVLQSNELF---QTMKQYATVDALTGLGNVRQF 206 Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 IS+ N+ L ++ DID+FK +ND +GHP GD+V+ + L P Sbjct: 207 DLEMNRHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDL 266 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 R GGEEFA + +R +E+ + G I IT+S G++E ++ Sbjct: 267 AFRKGGEEFALLIPNKGLAYGIRMGEQIRIAVESHPFQLLDGTKIKITVSVGVSE--YEG 324 Query: 232 PISTIIYRADQALYVAKKSGRNRV 255 I AD ALY +K++GRN+V Sbjct: 325 SSEQFIQAADDALYYSKRNGRNKV 348 >gi|317491852|ref|ZP_07950287.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920286|gb|EFV41610.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 352 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 94/183 (51%), Gaps = 4/183 (2%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFF 134 + LL+ Y + SI + ++ ++ S D ++ + N + + +L +V Sbjct: 168 LCLLVCYQTLSIKRRSVDAFFKVRAESLRDAMTKVHNRQSLELQLQALSKSRTPCCLVMI 227 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID FK +ND +GH GD+V+ +++ + ++ + F+ R GGEEFA A Sbjct: 228 DIDNFKLVNDTYGHLAGDQVLVEVAELMNLITRSSDFIARFGGEEFAIIIHHDDLNRAFQ 287 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 + +R I N + +S GP IH+T S GI+ K + + RAD ALY AK +G+N Sbjct: 288 ICERIRLSISNRKFFLSHGPKIHVTASFGISLYDGKTSTVEETLNRADNALYQAKHTGKN 347 Query: 254 RVV 256 +VV Sbjct: 348 KVV 350 >gi|295699042|ref|YP_003606935.1| diguanylate cyclase [Burkholderia sp. CCGE1002] gi|295438255|gb|ADG17424.1| diguanylate cyclase [Burkholderia sp. CCGE1002] Length = 371 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 21/180 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QL D L+GL N F L Y ++ +F DID FK IND+ GH + Sbjct: 190 ERLKQLGMTDSLTGLANRRYFDERLREELMRAVRYRAPVACLFIDIDGFKSINDSHGHQI 249 Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD+ +A ++ Q V + T V R GGEEF AA L +A +A +R +EN Sbjct: 250 GDRALAAVAACVRQQVRLGDT---VARYGGEEF-AALLQGDRSDALTVAERVRLAVENLD 305 Query: 208 INISSGPSIHITISAGIAER-CHKEPI------STIIYRADQALYVAKKSGRNRVVCFSD 260 + G I +++S G+A R P ++ AD+A+Y AK++GRNR+ +D Sbjct: 306 VRDEHGERIALSVSIGVAARVVAGSPADAMSLGQAMMDEADRAMYQAKRNGRNRIEAQAD 365 >gi|89094829|ref|ZP_01167762.1| GGDEF protein [Oceanospirillum sp. MED92] gi|89080884|gb|EAR60123.1| GGDEF protein [Oceanospirillum sp. MED92] Length = 323 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 23/222 (10%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGS--ILKE--LFISYNRISQLS--RIDCLSG 111 F G +YIL++ ++ ++ I L+ G +S S IL E I N++S L D L+G Sbjct: 95 FKGDDYILLD-ITKDVLPRRIILIRGKVSSSDLILVEGVYGIYANQVSLLDSKERDNLTG 153 Query: 112 LLNHSAFISSLGS-----YNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L N +L N KL+ +V DID+FK+IND FGH GD+V+ +D Sbjct: 154 LPNRQTMEFTLNDVVTFHRNNKLNPIKPSWMVVLDIDHFKKINDTFGHLYGDEVLLHFAD 213 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L F F+ R GGEEF A ++ +EA + + +++ PS +T+ Sbjct: 214 LLKKSFRHTDFLFRYGGEEFVAIVNNANPEEAQQILERFHQAVQDYDF-----PSGKVTV 268 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 S G + P + AD+ALY AK +GRN +V F D++ Sbjct: 269 SIGYTQVDPVTPPLLLFEHADRALYHAKHNGRNMIVNFEDMD 310 >gi|94310810|ref|YP_584020.1| diguanylate cyclase [Cupriavidus metallidurans CH34] gi|93354662|gb|ABF08751.1| conserved hypothetical protein (contains GGDEF domain) [Cupriavidus metallidurans CH34] Length = 586 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 17/198 (8%) Query: 75 SITISLLLGYISGSILKELFISY----NRISQLSRIDCLSGLLNHSAFISSLG---SYNE 127 ++ + LLL + + +I+ LF Y + L+ D L+GL N F S ++ + Sbjct: 372 AVALGLLLCF-TLAIVHTLFGHYIARGEALRTLAETDALTGLANRRVFASRFADAYAWCK 430 Query: 128 K----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + +S++ DID FK+IND +GH GD V+ L+D L RLGGEEFA Sbjct: 431 RDAVPVSLIMLDIDRFKKINDRWGHASGDVVLRTLADALRANVRNVDLPARLGGEEFAVL 490 Query: 184 ALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEP--ISTIIY 238 + +AA LA LR ++ ++ SI T S G+A+ EP + +++ Sbjct: 491 LPRTGIADAANLAEKLRLALQALVCEPVDSDDTASIRFTASFGVAQIAPDEPGNLDSLLM 550 Query: 239 RADQALYVAKKSGRNRVV 256 ADQ LY AK GRN+VV Sbjct: 551 VADQRLYAAKAGGRNKVV 568 >gi|315180273|gb|ADT87187.1| GGDEF family protein [Vibrio furnissii NCTC 11218] Length = 336 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 8/164 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151 N +S L+ D L+G N + S+ + N L ++ D+DYFKQ+ND FGH G Sbjct: 157 NSLSYLASRDSLTGAHNRLSLSSAFNHFEQHKDDNSSLCLLIIDLDYFKQVNDEFGHDTG 216 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ + L V G R+GGEEF +A + LR I+ N Sbjct: 217 DKVLIETTQLLAQVVGDENLF-RIGGEEFCVTLFDQGLTQAERVGERLRGIVGQHLYNYR 275 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I +T+S GI E + +S ++ AD LY AKK+GRN+V Sbjct: 276 N-QRIALTLSVGICEYRDGDNLSDLLKLADVELYRAKKNGRNQV 318 >gi|254502389|ref|ZP_05114540.1| hypothetical protein SADFL11_2428 [Labrenzia alexandrii DFL-11] gi|222438460|gb|EEE45139.1| hypothetical protein SADFL11_2428 [Labrenzia alexandrii DFL-11] Length = 729 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 10/165 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI QL+ D L+GL N ++ + G + ++ + D+D+FK +ND GH G Sbjct: 295 RIHQLAYFDTLTGLANRDGTLAHIRSCLCGPGGEDRIFALFYIDLDHFKAVNDKRGHATG 354 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+A + +L V T +F+GRLGG+EFAA ++QEA + +DL + I++ Sbjct: 355 DRVLAIAAQRLQSVCPTDVFLGRLGGDEFAAFCPVKTKQEAQAV-SDLFQAALLEPIDV- 412 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 SG + +S GIA H ++ RAD A+Y AK +G V Sbjct: 413 SGEQFALGLSVGIALAPYHAREADALLSRADMAMYQAKATGAGSV 457 >gi|308050452|ref|YP_003914018.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] gi|307632642|gb|ADN76944.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] Length = 389 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 10/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 ++ L+ D L+GL N F Y L+++ DID+FK+IND FGHP Sbjct: 216 EKLRALALTDPLTGLSNRRHFFDYSEPYLVRALEQGGGLALILMDIDHFKEINDRFGHPF 275 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ +LV + R+GGEEFA ++Q +A L + + +Q Sbjct: 276 GDRVLGQFGQRLVNLVEEEALAARIGGEEFALLMPLRTDQCVQEVAECLCRQVGWTQ--T 333 Query: 211 SSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNR 254 G + + +S G A R +++ ++ + RAD+ALY AK GRNR Sbjct: 334 EQGQEVRVAVSVGATAWRGNQDRLTDMYLRADKALYQAKAEGRNR 378 >gi|126731499|ref|ZP_01747305.1| two component diguanylate cyclase [Sagittula stellata E-37] gi|126708035|gb|EBA07095.1| two component diguanylate cyclase [Sagittula stellata E-37] Length = 507 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 11/160 (6%) Query: 107 DCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N IS L E+ +++ D+DYFKQ+ND++GH GD V+ L+ Sbjct: 296 DPLTGLYNRRYALPHISRLADRAERSRRPYALLLADLDYFKQVNDDYGHAAGDAVLVTLA 355 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L + R GGEEF A + A + A L ++ + I++ G I +T Sbjct: 356 QRLTDNLRAADLIARWGGEEFLVAMPDTDRTAARLTAGRLCSLMAKNPISLPDGRRIIVT 415 Query: 220 ISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+A R + P+ +I AD ALY AK GRN VV Sbjct: 416 LSIGVAIGVSRSAETPVD-LISSADSALYAAKNGGRNTVV 454 >gi|239906295|ref|YP_002953036.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239796161|dbj|BAH75150.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 368 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 85/169 (50%), Gaps = 12/169 (7%) Query: 102 QLSRIDCLSGLLNHSAFISS----LGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N F LG LS++ DID+FK +ND +GH GD V Sbjct: 194 RLAASDPLTGLANRRGFFEGAARMLGMARRCGTPLSMIMLDIDHFKAVNDAYGHDAGDAV 253 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ +L GR+GGEEFA G+ LA LR +E+ + Sbjct: 254 LRAVAGRLRESLRVSDLAGRVGGEEFAVLCPGTDLAGGVELAERLRLALEDMVVTADC-R 312 Query: 215 SIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ +T S G+A+ C + S + RAD+ALY AK+ GRNRV SD Sbjct: 313 AVKVTASFGVAQ-CRDDRDAAPSACLTRADRALYAAKRGGRNRVCLESD 360 >gi|188533209|ref|YP_001907006.1| hypothetical protein ETA_10630 [Erwinia tasmaniensis Et1/99] gi|188028251|emb|CAO96109.1| Putative exported protein [Erwinia tasmaniensis Et1/99] Length = 524 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 9/167 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+ ++ D ++GLLN + L S ++ +++ DID FK++ND FGH VGDKVI Sbjct: 360 RLKSETQTDPMTGLLNRRGLYAVLDYFLSARQEFAVLALDIDRFKRVNDTFGHAVGDKVI 419 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++QL + R GGEEF G+ A ++A +R+ IE QI + + Sbjct: 420 KTVAEQLAKTARRSDIICRNGGEEFLMILPGADRDIALMIAERVREHIE--QIRLEAVG- 476 Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 H+T+S GI+ + + +AD ALY AK +GRN V+ D Sbjct: 477 -HVTVSVGISFWAPDDEADMHQTFVQADDALYQAKNAGRNCVIVAQD 522 >gi|163784749|ref|ZP_02179554.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Hydrogenivirga sp. 128-5-R1-1] gi|159879983|gb|EDP73682.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Hydrogenivirga sp. 128-5-R1-1] Length = 393 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 12/167 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 +R+ QL+ D L+G+ N F+ L YN +S++ DID FK+IND +GH + Sbjct: 231 DRLKQLAETDELTGIYNRRKFMELLKKETEKSKRYNNNISLLLIDIDDFKKINDTYGHEI 290 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ S + R GGEEF + + A IL + ++ N + + Sbjct: 291 GDFVLTLFSKLVSKNIRETDIFARWGGEEFVILTF-TDLRNAKILGEKICNVVSNFKFDD 349 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IT+S GIA E I++ I RAD+ +Y AK+SG+N+V Sbjct: 350 LD----KITVSIGIASYKKDEDINSFISRADKLMYKAKQSGKNKVAT 392 >gi|126698781|ref|YP_001087678.1| putative signaling protein [Clostridium difficile 630] gi|255100200|ref|ZP_05329177.1| putative signaling protein [Clostridium difficile QCD-63q42] gi|115250218|emb|CAJ68039.1| putative diguanylate kinase signaling protein [Clostridium difficile] Length = 572 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 10/153 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ + N +F Y EK ++V DID FK INDN+GH GD VI +++ + Sbjct: 425 DGLTNVYNRKSFDIMYEKYREKDDNFALVMIDIDNFKLINDNYGHKFGDTVIKGITNTIC 484 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V+ V R GGEEF+ S +E A + + +R I N + N + +TISAG Sbjct: 485 VMLEQDDKVFRYGGEEFSVLIRNKSGEEVADIIDSIRVAIANKKWN----DDVTVTISAG 540 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +A H ++ AD+ LY AK+ GRN+VV Sbjct: 541 VA---HISDSKDVLEEADKNLYKAKQLGRNKVV 570 >gi|87118683|ref|ZP_01074582.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121] gi|86166317|gb|EAQ67583.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121] Length = 419 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 10/163 (6%) Query: 102 QLSRIDCLSGLLNHSAF----ISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+ + N +F + L Y++ +LSI+ FD+D+FK +ND +GH GD V Sbjct: 230 EMATKDKLTNIYNRRSFEARLLQDLKQYDKFQTELSIILFDVDHFKFVNDTYGHQAGDSV 289 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L++ + V R GGEEF + + + ++A LR IEN+ + S Sbjct: 290 LTLLAEIAQQTVRSNDIVARYGGEEFIILLPNTGKNGSQVIAEKLRSAIENAAFDTQS-Y 348 Query: 215 SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I ITIS G+A + +I AD ALY AK +GRN+V Sbjct: 349 KIQITISLGVACISDVQHPNLDNLIKSADDALYYAKHNGRNQV 391 >gi|152968102|ref|YP_001363886.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] gi|151362619|gb|ABS05622.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] Length = 530 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 10/168 (5%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R + +R D L+GL N + + + LS V D+D+FK +ND + H VG Sbjct: 359 RYREEARRDPLTGLRNRLFVDERLPLLVDEFRAGDRHLSAVLLDLDHFKSVNDGYSHEVG 418 Query: 152 DKVIAFLSDQLVVVFG--TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 D V+ ++ L G F RLGGEEF A + Q+A LA +R + + Sbjct: 419 DAVLRAVAAVLEEAAGHAAQSFAARLGGEEFLVALVTDDAQQAVRLAEGVRARVRAHDWS 478 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ P +T+SAG+A + ++++ RAD+ LY AK +GR+RVV Sbjct: 479 ATT-PGRGVTVSAGVATLRPGDDKTSLLARADERLYAAKAAGRDRVVA 525 >gi|330980266|gb|EGH78407.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 308 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 8/170 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 Y +Q + D L+ N A SL + + LS++ DID+FK++ND +GH Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ L V R GGEEF + A ++ L + + N + Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGADSAELIGQRLCQAVRNLEFR 259 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S P++ +T+S G + EP +++ RAD ALYVAK+ GRNR+ S Sbjct: 260 ELS-PALTMTVSLGCSTLLPTEPADSLLRRADNALYVAKREGRNRIAMAS 308 >gi|313680697|ref|YP_004058436.1| diguanylate cyclase [Oceanithermus profundus DSM 14977] gi|313153412|gb|ADR37263.1| diguanylate cyclase [Oceanithermus profundus DSM 14977] Length = 372 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 18/197 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHS-------AFISSLGS 124 +LL YISG + L +++RI + L+ +D L+ L N + Sbjct: 174 ALLQFYISGIVYAMLLYAFSRIEESYAENRMLAYLDHLTQLPNRRYGEAVLVHLFRQMRE 233 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + S++ D+D FK++ND GH VGD+V+ + + V R GGEEF Sbjct: 234 HGGTFSVIMLDLDGFKKVNDRHGHDVGDRVLKRCALLIQRYLPRGARVIRWGGEEFLIVL 293 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 E+ A +A ++R+ +E S + GP + S G+A + + T+I RADQA+ Sbjct: 294 PDLEERAALAVAEEVRRGLERSP-HERVGP---VLASLGVAGCRPGDTLDTLIQRADQAM 349 Query: 245 YVAKKSGRNRVVCFSDI 261 Y+AK++G NRVV FS + Sbjct: 350 YLAKQNGGNRVVAFSQL 366 >gi|171060573|ref|YP_001792922.1| diguanylate cyclase [Leptothrix cholodnii SP-6] gi|170778018|gb|ACB36157.1| diguanylate cyclase [Leptothrix cholodnii SP-6] Length = 370 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 8/167 (4%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148 ++ RI QL+ D L+GL N A + SL + +++V D+D+FK IND GH Sbjct: 202 AFERIRQLATRDDLTGLPNRRALMDSLVNETARQARLGQPIALVAIDLDHFKAINDEHGH 261 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ +++ + P + R GGEEF ++ +A LR+ + + Sbjct: 262 KAGDAVLRGFAERALTELRGPDVLARWGGEEFLLLLPDTTVTQALSCVQRLRERLVLTPF 321 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + P + +T SAG+ I I RAD+A+Y AK +GR+RV Sbjct: 322 D-EVQPGLRVTFSAGVTRCLGGGDIDAAIERADRAMYRAKAAGRDRV 367 >gi|168213529|ref|ZP_02639154.1| GGDEF/HD domain protein [Clostridium perfringens CPE str. F4969] gi|170714917|gb|EDT27099.1| GGDEF/HD domain protein [Clostridium perfringens CPE str. F4969] Length = 564 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ NH F L NEKLS++F DIDYFK ND +GH GD+ + + Sbjct: 197 DGLTGVYNHRYFYDKLREKMHISEVENEKLSLIFMDIDYFKHYNDLYGHQKGDEALKKIG 256 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218 L + V R GGEEFA +SE+EA +A +R +E + + P+ + Sbjct: 257 KLLKNIARENDLVARYGGEEFAIILPNTSEEEATKIAERIRNKVEKTYFEGQENQPNANF 316 Query: 219 TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258 T+S GIA K + + AD ALY AK +NRV + Sbjct: 317 TVSVGIAVFPDKAKSELELVKCADDALYRAKFFHKNRVETY 357 >gi|291279090|ref|YP_003495925.1| hypothetical protein DEFDS_0689 [Deferribacter desulfuricans SSM1] gi|290753792|dbj|BAI80169.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 315 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 32/243 (13%) Query: 26 TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVII-----SITISL 80 TF+++ S F+ I + I + LFY+ ++ ++ SL+I+ SI I L Sbjct: 83 TFLVFDSKFYVIKVILAILLILFDLFYLNIS--------ILSTFSLMILYSLFFSIFIKL 134 Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133 L+ + I +LS D L+GLLN F+ Y + +++ Sbjct: 135 LIDRLE-----------EEIDELSITDDLTGLLNQKGFLKKFEEEYYRSVRYKKNFTVIM 183 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D D K++ND +GH G KVI F++D++ F R GG+EF + + Sbjct: 184 LDSDDLKKVNDTYGHKYGTKVILFIADEIKKNIRRTDFACRYGGDEFMICLVETPINNGK 243 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGR 252 I A L+ I + G ++T+S G+ H S ++ D+ALY AK G+ Sbjct: 244 IFAERLKNNIAMKPVFTDKGRGFNVTVSVGVVGYPHTSEKSFELLDLVDKALYEAKNKGK 303 Query: 253 NRV 255 NRV Sbjct: 304 NRV 306 >gi|145298526|ref|YP_001141367.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851298|gb|ABO89619.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 392 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 17/162 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVI-- 155 + Q + D L+GLLN F+ +G E ++ D+D FKQ+ND GH +GD+V+ Sbjct: 238 LRQQASHDSLTGLLNRRGFMEQMGDRRIGEFGALAVLDLDDFKQVNDRHGHEIGDRVLEA 297 Query: 156 --AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 A+L Q +V R GGEEF L E E A A R + + + +++S Sbjct: 298 VGAYLGAQPELV------ASRFGGEEFVL--LLPREDEQAQQARCERILQDLAALDLSG- 348 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IHIT+S G+A H T+ +AD ALY AK+ G+NR+ Sbjct: 349 --IHITVSMGLARCQHDWHFDTLFSQADGALYQAKREGKNRI 388 >gi|182678198|ref|YP_001832344.1| response regulator receiver modulated diguanylate cyclase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634081|gb|ACB94855.1| response regulator receiver modulated diguanylate cyclase [Beijerinckia indica subsp. indica ATCC 9039] Length = 457 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 12/162 (7%) Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+GL N + L G+ + S++ DID+FK IND GH GD+++ + Sbjct: 291 IDPLTGLHNRRFLEAQLHRLQQEHGTASTVFSLMVLDIDHFKAINDRHGHDAGDQILKYF 350 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIH 217 + ++ V + R+GGEEF G+ A +A +R IE +S + I Sbjct: 351 AARVKQVVRAGDWPCRIGGEEFVVLMPGAGLDFAKQIAERVRYAIEKDGFVLSGTRERIP 410 Query: 218 ITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRV 255 +T+S G+AE + EP + RAD+ALY AKK+GRNRV Sbjct: 411 VTVSIGLAEAVQQGSGAEPFEALFRRADRALYRAKKNGRNRV 452 >gi|74312120|ref|YP_310539.1| hypothetical protein SSON_1606 [Shigella sonnei Ss046] gi|73855597|gb|AAZ88304.1| hypothetical protein SSON_1606 [Shigella sonnei Ss046] gi|323164364|gb|EFZ50169.1| hypothetical protein SS53G_5359 [Shigella sonnei 53G] Length = 159 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 6/132 (4%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+++ DIDYFK INDN+GH GDKV++ + + + G V R+GGEEFA A + Sbjct: 19 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 78 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQA 243 + ++A +RK +E ++++T+S G+ R + + ++ AD Sbjct: 79 PVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTC 137 Query: 244 LYVAKKSGRNRV 255 LY +KK GRNR Sbjct: 138 LYRSKKDGRNRT 149 >gi|117926802|ref|YP_867419.1| response regulator receiver modulated diguanylate cyclase [Magnetococcus sp. MC-1] gi|117610558|gb|ABK46013.1| response regulator receiver modulated diguanylate cyclase [Magnetococcus sp. MC-1] Length = 310 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 13/168 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QL+ +D L+G+ N F S Y S++ DIDYFK+ ND +GH GD Sbjct: 140 LKQLAIMDGLTGIANRRRFDQFVDYEWSRSLRYQHNFSLIMLDIDYFKRFNDCYGHAQGD 199 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + PM R GGEEFA +S + A +AN + + ++ +I + Sbjct: 200 QCLKQVAYAISQAMPRPMDLAARYGGEEFACVLPETSREGAVTVANRVLQGVQELRIAHA 259 Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S + H+T+S GIA R P +T++ RADQALY AK SGRN++ Sbjct: 260 HSNVANHVTVSVGIASMVPRSEDIP-TTLLARADQALYHAKNSGRNQL 306 >gi|257876426|ref|ZP_05656079.1| membrane-anchored GGDEF domain-containing protein [Enterococcus casseliflavus EC20] gi|257810592|gb|EEV39412.1| membrane-anchored GGDEF domain-containing protein [Enterococcus casseliflavus EC20] Length = 367 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 6/139 (4%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTP---MFVGRLGGEEF 180 ++L +V D+D+FK+IND+ GH +G++ ++F S++L+ +P + V R GGEEF Sbjct: 230 KDQLVVVMMDLDHFKRINDHHGHQIGNQALSFFSEKLMTFLYQKSPSHLVEVYRYGGEEF 289 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 ++ + + + N Q+ + + + + SAGI+E IS Y+A Sbjct: 290 LVLFKENTSDAVKKIIEEFHLFLSNEQLKLETA-QLTLYFSAGISEAASALDISETFYQA 348 Query: 241 DQALYVAKKSGRNRVVCFS 259 DQALY AK+ GRNR + FS Sbjct: 349 DQALYEAKRKGRNRTIIFS 367 >gi|242238178|ref|YP_002986359.1| diguanylate cyclase [Dickeya dadantii Ech703] gi|242130235|gb|ACS84537.1| diguanylate cyclase [Dickeya dadantii Ech703] Length = 547 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 64/166 (38%), Positives = 85/166 (51%), Gaps = 10/166 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-YNE--KLSIVFFDIDYFKQINDNFGHPVGDK 153 + RI +LS + + LN S+ NE K++++ DID+FKQIND FGH GD Sbjct: 380 HKRIGRLSS-EAHTDPLNRRGMQESMEELRNEYKKIAVIAVDIDHFKQINDTFGHDTGDD 438 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 VI LS F + R+GGEEF G+ A I+A LR N+ N S Sbjct: 439 VIRKLSQLFRQNFRKTDLICRIGGEEFLILLPGADIHIATIIAERLR----NNVANASYL 494 Query: 214 PSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 P+ H +TIS G+ P+ I AD ALY AKK GRN+V+ Sbjct: 495 PNAHPVTISIGVTTFNPQTSPLDKAIKIADNALYKAKKGGRNKVMV 540 >gi|206577141|ref|YP_002237697.1| diguanylate cyclase [Klebsiella pneumoniae 342] gi|206566199|gb|ACI07975.1| diguanylate cyclase [Klebsiella pneumoniae 342] Length = 559 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 106/200 (53%), Gaps = 11/200 (5%) Query: 69 LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------S 120 L+L+ + T+ LLL ++ +++ + + + + D L+ LLN A S Sbjct: 357 LTLMWVLFTLMLLLSWLVIRRMVRNMSVLQTSLEWQAWHDALTRLLNRGALFEQAMAVAS 416 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + L+++ D+D+FK+IND +GH GD+V++ ++ L +GR+GGEEF Sbjct: 417 ACQRSGRPLAVIQLDLDHFKRINDRYGHQAGDRVLSTVASTLASTVREGDLLGRVGGEEF 476 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 ++ Q+A +A LR I+ ++ + + ++ ++ S G+ +E + + Sbjct: 477 CVVLPNTTLQDAVAVAERLRLRIQGREVFLHNNVTLRVSASLGVSTSEEQGEYQFEALQS 536 Query: 239 RADQALYVAKKSGRNRVVCF 258 AD+ LY+AK++GRN+ VCF Sbjct: 537 VADRRLYLAKQNGRNQ-VCF 555 >gi|160941315|ref|ZP_02088652.1| hypothetical protein CLOBOL_06208 [Clostridium bolteae ATCC BAA-613] gi|158435876|gb|EDP13643.1| hypothetical protein CLOBOL_06208 [Clostridium bolteae ATCC BAA-613] Length = 522 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 15/169 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +I S D L+GL N F + + +S+++ D+D FK++ND +GH VGD V+ Sbjct: 360 KQIRHSSNTDFLTGLYNRRCFYQYIHNNRGGRTVSLMYIDLDRFKEVNDTYGHKVGDAVL 419 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRKIIENSQINI 210 +D L +F FV RLGG+EF LG EQEA ++R + Sbjct: 420 VHTADVLRRLFRDD-FVARLGGDEFLVVRLGKCSMDQMEQEAEAFLKEMRTAF------L 472 Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 ++ ++ ++ S GIA+ I ++ R+DQALY AKK+GR+R + Sbjct: 473 AAEQTVSLSASVGIAQSSDSMVDIDALLQRSDQALYQAKKAGRSRYCVY 521 >gi|146305758|ref|YP_001186223.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas mendocina ymp] gi|145573959|gb|ABP83491.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas mendocina ymp] Length = 540 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 10/163 (6%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + L+ DID+FK++ND +GHP+GD+VI L+ Sbjct: 377 DSLTGLYNHTHTLQLLEDACFRARRDEQPLAFAMLDIDHFKKVNDTYGHPMGDRVIKSLA 436 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L +GR GGEEFA + EQ A + ++R+ ++I+ + P + Sbjct: 437 LFLKQRLRKTDHIGRYGGEEFAVVLPDTDEQSALRVLEEIRQRF--AEIHYPAQPQDLSC 494 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 T S GIA + + RAD+ALY AK GRNRV ++ + Sbjct: 495 TFSCGIAMLQPGLDGNALSKRADEALYTAKHGGRNRVELYNPL 537 >gi|85708037|ref|ZP_01039103.1| hypothetical protein NAP1_02340 [Erythrobacter sp. NAP1] gi|85689571|gb|EAQ29574.1| hypothetical protein NAP1_02340 [Erythrobacter sp. NAP1] Length = 410 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 84/168 (50%), Gaps = 14/168 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 N + + S D L+GL N +AF ++G + ++ S+V DID+FKQ+ND +GH Sbjct: 202 NSLRESSDKDPLTGLNNRAAFEEAMGRIIPRAHTEDKPFSLVVADIDHFKQVNDIWGHQA 261 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI---IENSQ 207 GD I+ + GR+GGEEF A + A LA+ +R +E+ Sbjct: 262 GDSAISGFGKLIQETIRGCDTAGRIGGEEFCVAVWNCPNEPAERLADRIRTAFARLEHDG 321 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +N I +T S G+A E + RAD ALY AK +GRNRV Sbjct: 322 LN----DDIRLTASFGVATVREGESYERLFARADAALYRAKSNGRNRV 365 >gi|258655117|ref|YP_003204273.1| diguanylate cyclase [Nakamurella multipartita DSM 44233] gi|258558342|gb|ACV81284.1| diguanylate cyclase [Nakamurella multipartita DSM 44233] Length = 349 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 88/165 (53%), Gaps = 14/165 (8%) Query: 101 SQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +QLS D L+GLLN ++ L G+ N +++ DID+FK IND +GH VGD V+ Sbjct: 181 AQLSMTDPLTGLLNRRGMLARLLGTTGTTNRYCAVLVLDIDHFKTINDLYGHAVGDDVLR 240 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + L+ + RLGGEEFA AL ++ EA ILA LR S + + S Sbjct: 241 AVGQGLLRATRSDDVAVRLGGEEFAVLAL-NTPAEARILAERLRV----SAMQWMAPWSG 295 Query: 217 HITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I++ + E E ++ ++ AD+ LY AK +GRNRVV Sbjct: 296 TISVGGVVVELLNSDELTAELVNCLMEEADRYLYQAKHAGRNRVV 340 >gi|108763771|ref|YP_633352.1| FHA/GGDEF domain-containing protein [Myxococcus xanthus DK 1622] gi|108467651|gb|ABF92836.1| FHA/GGDEF domain protein [Myxococcus xanthus DK 1622] Length = 307 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 5/130 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS+V FD+D+FK+IND +GHP GD V+ ++ ++ T + R GGEEFA S+ Sbjct: 172 LSLVLFDVDHFKKINDAYGHPAGDYVLTRIAQRVSDTVRTEDLLARYGGEEFALMLRESA 231 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALY 245 E +A A R ++ + + SG I +TIS G+A + +P +I AD+ LY Sbjct: 232 EDQALACAERCRYAVDKADF-VFSGTPIKVTISLGVATLLDSDFSQP-EDLIAAADKYLY 289 Query: 246 VAKKSGRNRV 255 AK++GRNRV Sbjct: 290 RAKRAGRNRV 299 >gi|71906051|ref|YP_283638.1| PAS:GGDEF [Dechloromonas aromatica RCB] gi|71845672|gb|AAZ45168.1| PAS:GGDEF protein [Dechloromonas aromatica RCB] Length = 317 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 12/178 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 +++F ++ S D L+G+ N F ++ + E LS++ FD+D+FK N Sbjct: 141 EDVFELNRKLEAWSNQDGLTGIANRRLFDHTMAAEWARGKRSREPLSLLMFDVDHFKGYN 200 Query: 144 DNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 D++GH GD+ + L+ ++ + + T +F R GGEEFA + A +A R+ Sbjct: 201 DHYGHVKGDECLIRLAREVSQMPLRSTDLFA-RYGGEEFAFVLPQTPSDAAQQIAEKCRE 259 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257 ++ +I + P+ ITIS G+ E S T+I RAD LY AK++GRNRV C Sbjct: 260 VVAALKIPHALSPAGTITISVGVCTMLPGEESSYMTLIERADDKLYRAKRNGRNRVCC 317 >gi|37679342|ref|NP_933951.1| hypothetical protein VV1158 [Vibrio vulnificus YJ016] gi|320156916|ref|YP_004189295.1| two component response regulator [Vibrio vulnificus MO6-24/O] gi|37198085|dbj|BAC93922.1| conserved hypothetical protein [Vibrio vulnificus YJ016] gi|319932228|gb|ADV87092.1| two component response regulator [Vibrio vulnificus MO6-24/O] Length = 304 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 12/180 (6%) Query: 90 LKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 L+ I N ++ +++ D L+GL+N G + +++ FDID FK IND +GH Sbjct: 130 LQRALIEQNEQLKRMATTDALTGLVNRRYLADMAGKVSGNFALILFDIDDFKTINDQYGH 189 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+V+ +++ V G + R GGEEF A A DL I++ + Sbjct: 190 HVGDEVLVRIAEITRRVIGQHGYCARWGGEEFLILLPNFD----AKRAYDLAACIQD-EF 244 Query: 209 NISSGP--SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIENN 264 N S G + H T S G+A C++ +S +I +AD A+Y KKSG+NRVV S +E+ Sbjct: 245 NESKGALGAYHFTASFGVA--CNQGALSFHHVIRQADAAMYQGKKSGKNRVVSSSAMESR 302 >gi|323491761|ref|ZP_08096938.1| GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546] gi|323314017|gb|EGA67104.1| GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546] Length = 474 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N++ L+ D L+G N +F +S+ + L++V DID+FKQ+ND FGH Sbjct: 305 NKLRTLAATDALTGAFNRRSFQEQTERALSTCARWRAPLTVVLLDIDHFKQVNDQFGHAA 364 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ L + VGRLGGEEF + +A LR+ +E +I Sbjct: 365 GDEVLIALVRHIQQSTRNMDVVGRLGGEEFGLVLPNTDSSLGFEIAERLRREVEAMEIYH 424 Query: 211 SSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256 P + ITIS G+ + P+ ++ R D LY AK GRN +V Sbjct: 425 EDQP-LKITISLGMTTLSFTQLATPLEDVLARVDGYLYEAKSLGRNCIV 472 >gi|312958185|ref|ZP_07772708.1| diguanylate cyclase [Pseudomonas fluorescens WH6] gi|311287616|gb|EFQ66174.1| diguanylate cyclase [Pseudomonas fluorescens WH6] Length = 687 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 87/161 (54%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ L +++++ LS+ D+D+FK+IND +GH GDKV Sbjct: 525 QKALIDPLTGLPNRAAWSERLDQEVNAWHQRGNSLSLAMLDLDHFKRINDGYGHLAGDKV 584 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ L F+ R GGEEF S +A + LR IE + P Sbjct: 585 LKIIANVLSKRLRPTDFIARFGGEEFVLLMPDSPLADALAVGGVLRNAIEACPFHFKGEP 644 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+A+ E + RAD+ALY AK +GRN+V Sbjct: 645 -VTITVSMGVAQLQSGERSELALKRADEALYRAKAAGRNQV 684 >gi|27366393|ref|NP_761921.1| Two component response regulator [Vibrio vulnificus CMCP6] gi|27362594|gb|AAO11448.1| Two component response regulator [Vibrio vulnificus CMCP6] Length = 304 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 12/180 (6%) Query: 90 LKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 L+ I N ++ +++ D L+GL+N G + +++ FDID FK IND +GH Sbjct: 130 LQRALIEQNEQLKRMATTDALTGLVNRRYLADMAGKVSGNFALILFDIDDFKTINDQYGH 189 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+V+ +++ V G + R GGEEF A A DL I++ + Sbjct: 190 HVGDEVLVRIAEITRRVIGQHGYCARWGGEEFLILLPNFD----AKRAYDLAACIQD-EF 244 Query: 209 NISSGP--SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIENN 264 N S G + H T S G+A C++ +S +I +AD A+Y KKSG+NRVV S +E+ Sbjct: 245 NESKGTLGAYHFTASFGVA--CNQGALSFHHVIRQADAAMYQGKKSGKNRVVSSSAMESR 302 >gi|71909479|ref|YP_287066.1| diguanylate cyclase [Dechloromonas aromatica RCB] gi|71849100|gb|AAZ48596.1| diguanylate cyclase [Dechloromonas aromatica RCB] Length = 517 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 8/179 (4%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 I+ S L +L + S L+R D L+ LN +SS+ + LSI D+D Sbjct: 338 ITESELMQLHQELDNASALARHDPLTDALNRKGLDEALAREVSSMRRKDLPLSISLLDVD 397 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK++ND GH GD + L+D + R GGEEF ++ ++ Sbjct: 398 NFKKLNDRLGHDAGDGALIHLADVTRSNMRPSDTLARYGGEEFVVLMPDTTLEQGIEAMT 457 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 L++ + + I +S I IT SAG+A+ E + I RADQA+Y+AK+SG+NRV+ Sbjct: 458 RLQRELTKA-IYLSGNEKILITFSAGVAQLAPDETGTDAIRRADQAMYLAKRSGKNRVM 515 >gi|332558859|ref|ZP_08413181.1| response regulator receiver modulated diguanylate cyclase [Rhodobacter sphaeroides WS8N] gi|332276571|gb|EGJ21886.1| response regulator receiver modulated diguanylate cyclase [Rhodobacter sphaeroides WS8N] Length = 461 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 13/168 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ +D L+GL N + L + +E+ +++ D+D FK +ND +GH GD V Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERARAADERFAVMVIDLDRFKSVNDRWGHGAGDAV 346 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSG 213 + ++ +L + R+GGEEF A E A +A LR+ +E + + G Sbjct: 347 LVAVARRLHANLRPGDLIARIGGEEFLVALPDVPRPEDAHAVAERLREAVEEEPVPLPGG 406 Query: 214 PSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+ +TIS G+A EP+ ++ RAD AL +AK +GRN+V Sbjct: 407 GSLRVTISVGLALSPDGAGRRAEPVDAVVQRADSALLLAKSAGRNQVT 454 >gi|326316728|ref|YP_004234400.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373564|gb|ADX45833.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 326 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 82/169 (48%), Gaps = 10/169 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 RI QLS D L+G+ N F LGS E L +V DID+FK ND++GHP Sbjct: 154 ERIYQLSITDSLTGIANRRRFDEMLGSEFARHARSGEPLCVVLIDIDHFKAFNDHYGHPG 213 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + ++ + P R GGEEFA + EA+ + LR+ IE I Sbjct: 214 GDSCLQRVAAAIDTRMRWPCDLAARYGGEEFACILPATGLDEASDMTEGLRRAIEALAIP 273 Query: 210 ISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256 ++ S +T S G A H ++ ++ AD +LY AK+ GRNR Sbjct: 274 HAAAASGRVTASVGAACCLHAAQQTPDGLLEAADASLYRAKREGRNRTA 322 >gi|269961335|ref|ZP_06175700.1| GGDEF family protein [Vibrio harveyi 1DA3] gi|269833886|gb|EEZ87980.1| GGDEF family protein [Vibrio harveyi 1DA3] Length = 337 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LS L N AF + L N+ +++V DID+FK NDN+GH GD VI ++ +L Sbjct: 181 DGLSNLYNRRAFDNDLQMLIDSNQAMTLVMLDIDHFKAFNDNYGHLFGDTVIKAIARRLQ 240 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221 + R GGEEFA S + A A+ LR++IE ++ + SG + IT S Sbjct: 241 QSCRDGISAYRFGGEEFAVIIPNKSLRIARQYADTLRRMIEKLRVRDKRSGTQVQSITAS 300 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE + +++ +AD+ LY AK+ GRNRV+ Sbjct: 301 FGVAEFEVGDTPESLVNKADKQLYEAKQLGRNRVM 335 >gi|120553435|ref|YP_957786.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120323284|gb|ABM17599.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 461 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 20/163 (12%) Query: 106 IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ L N A+ L Y L++ D+D FK+IND++GH GD+V+ + Sbjct: 303 TDLLTQLPNREAWQERLSFEYNRWLRYRHPLTVAVLDVDLFKRINDSYGHKAGDRVLQLV 362 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS------S 212 + ++ + F+ R GGEEF + EA RK++++ + ++S S Sbjct: 363 AREMSTRLRSTDFIARFGGEEFVVLLPETPTDEA-------RKVLDSLREHVSGLPFHFS 415 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + IT SAG+ + ++ RAD+ALY AK GRNRV Sbjct: 416 GEPVSITFSAGLTGFQDDDTEESVFDRADRALYQAKDEGRNRV 458 >gi|304396879|ref|ZP_07378759.1| diguanylate cyclase [Pantoea sp. aB] gi|304355675|gb|EFM20042.1| diguanylate cyclase [Pantoea sp. aB] Length = 473 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 100/194 (51%), Gaps = 14/194 (7%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----N 126 L + +I IS L+ S +++L R++ + D L+ LL+ S SL + + Sbjct: 270 LGVATIAISPLIVAASMDAIRQL---NQRLALRANYDFLTRLLSRSGLYESLRAEPIFPD 326 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 K+ ++ D+DYFK INDNFGH GD V+ ++ ++ V G V R GGEEF Sbjct: 327 RKVGVILLDVDYFKAINDNFGHDAGDSVLEEIARRMQQVIGKEGRVCRFGGEEFVVVLFD 386 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP------ISTIIYRA 240 + + LA +R+ + + + G + +T+S G+A E I+ +I A Sbjct: 387 QNPAKLYFLAESIRQKMAKEKFWL-QGSTATVTVSLGLAHSSAGEATEWHRVINRLISAA 445 Query: 241 DQALYVAKKSGRNR 254 D+ LY++K++GRN+ Sbjct: 446 DKNLYLSKRNGRNQ 459 >gi|227822405|ref|YP_002826377.1| probable two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227341406|gb|ACP25624.1| probable two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 415 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F + E SI DID+FK++ND +GH +GD V+ ++ Sbjct: 249 DYLTGIFNRRHFFMTGPRLVDQYLRRGEGTSIAVLDIDHFKRLNDTYGHEIGDLVLKHVA 308 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L V+ G + RLGGEEF G ++A LR + S+I ++ + IT Sbjct: 309 GRLKVLVGDQHLLARLGGEEFGILFDGLGVRDAFAFCERLRAELAKSKI-VADDEELAIT 367 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+A E ++ ADQ LY+AK +GRNRV+ Sbjct: 368 VSIGLATIEAPEAFENYLHAADQFLYMAKHAGRNRVI 404 >gi|212637502|ref|YP_002314027.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212558986|gb|ACJ31440.1| GGDEF domain protein [Shewanella piezotolerans WP3] Length = 397 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 19/172 (11%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ D L+GL + A + S N S+ DID+FK ND +GH VGD+V+ ++ + Sbjct: 225 HLAYRDDLTGLSSRRALNTMALSLNSHYSVAMVDIDHFKSFNDTYGHDVGDQVLQLIASK 284 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI----------NIS 211 L V G+ V R GGEEF + N+LR II + I N S Sbjct: 285 LTKVKGSGK-VYRYGGEEFTIVFPNRDVEFVLPYLNELRCIIRDYDIVLRNEHRKTSNKS 343 Query: 212 S--------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S ++++TIS G+AE + + + AD+ALY+AKK+GRNRV Sbjct: 344 SRNTQEDNLSTTVNVTISIGVAEHHGQLTFAQTLKLADKALYIAKKNGRNRV 395 >gi|45657013|ref|YP_001099.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600250|gb|AAS69736.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 317 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 100/211 (47%), Gaps = 34/211 (16%) Query: 82 LGYISGSILKELFISYNRISQLS--------------RIDCLSGLLNHSAF-------IS 120 L Y++G + ++ S +ISQL+ D L+ L N F I Sbjct: 106 LVYVTGRDITDVIESNRKISQLAVKLKETNDRLFEQASTDPLTKLKNRRMFNEELNNLIH 165 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + + LS++ D D+FK ND FGH GDKV+ L+ L F + R GGEEF Sbjct: 166 ACDKESHPLSLLMIDADHFKDYNDKFGHIAGDKVLVELASILTKTFRKKDVLARYGGEEF 225 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--------AERCHKEP 232 AA +SE EA +A L + + S +TIS GI ++ + E Sbjct: 226 IAALPNTSEPEANQIAERLVQTVREFSWEKRS-----VTISVGITTYNFNPTSKSINSEY 280 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + +I +AD+ALY +K SGR+R+ FS ++N Sbjct: 281 LLNLIEQADKALYCSKVSGRDRITHFSWVQN 311 >gi|154244236|ref|YP_001415194.1| diguanylate cyclase [Xanthobacter autotrophicus Py2] gi|154158321|gb|ABS65537.1| diguanylate cyclase [Xanthobacter autotrophicus Py2] Length = 554 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 89/181 (49%), Gaps = 12/181 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQIN 143 EL R++ L+R D L+GL N F + + G L++V D+DYFK N Sbjct: 365 ELRTMNGRLASLARTDGLTGLANRRTFDVQFSQDWVRARGD-GAPLTLVMLDVDYFKAFN 423 Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D GH GD+ + ++ L GT V R GGEEF G+ E A D+R + Sbjct: 424 DARGHLSGDEALRGVARMLSAAAAGTKHLVARYGGEEFIVLMSGADLAEGLAFAEDVRGL 483 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 + I + P +T S G+A + S T++ AD ALY AK+SGR+RVV +D Sbjct: 484 LGEVAIAHPASPRRRLTASFGVASTIPTQEGSPDTLVAAADAALYEAKRSGRDRVVAHAD 543 Query: 261 I 261 + Sbjct: 544 L 544 >gi|296445212|ref|ZP_06887172.1| diguanylate cyclase with PAS/PAC sensor [Methylosinus trichosporium OB3b] gi|296257386|gb|EFH04453.1| diguanylate cyclase with PAS/PAC sensor [Methylosinus trichosporium OB3b] Length = 502 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 98/188 (52%), Gaps = 16/188 (8%) Query: 83 GYISGSILKELFISYN-----RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130 G +SG ++ + IS R+ +L+ D L+G+ N S F I Y LS Sbjct: 306 GGVSGVVICGVDISERKAVEARLHRLATTDALTGVANRSHFFARADAEIRRAARYRRPLS 365 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D+FK++ND GH VGD V+A + + V R GGEEF A + EQ Sbjct: 366 VLMVDLDHFKRVNDEHGHAVGDAVLAEFAGLCARMLRAEDLVARYGGEEFVALLPETDEQ 425 Query: 191 EAAILANDLRKIIENSQINI-SSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAK 248 A + + LR+ QI S+G ++ +T+S G+ A + I + RAD+ALY AK Sbjct: 426 GAVAVGHRLRE--GAMQIRTPSAGSALRLTVSIGVSAVLAGEAAIEAALARADEALYQAK 483 Query: 249 KSGRNRVV 256 +GR+RVV Sbjct: 484 AAGRDRVV 491 >gi|218781592|ref|YP_002432910.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218762976|gb|ACL05442.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 308 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 7/174 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + KE ++ +LS D L+ L N F L + Y LS++FFD+D FK+ Sbjct: 128 LWKEREALMEQLKKLSITDGLTNLYNRRHFYRQLSTEANRAERYGRVLSLLFFDVDSFKK 187 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD+ + ++ + R GGEEFA +S ++A I LR Sbjct: 188 FNDTYGHLAGDEALKSIARATENCLRVADSIFRYGGEEFAVVLPETSGEQAIIAGQRLRN 247 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ ++ IS + +T+S G+ E E + + RAD A+Y +K+SG N+V Sbjct: 248 DIDQLRLPISEEETAKVTVSIGVTEFSPGEEMERCVKRADMAMYNSKRSGGNQV 301 >gi|114564162|ref|YP_751676.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114335455|gb|ABI72837.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 548 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 11/166 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N AF IS ++ +++V DID+FK+IND FGH VG Sbjct: 386 KLEQLASKDPLTLLYNRRAFSALVDKEISRAKRHHFPITLVILDIDHFKKINDEFGHNVG 445 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ +D+L + + R GGEEF ++ ++R+ I SQ++ S Sbjct: 446 DDILCRFADELSLNMRKENLICRWGGEEFVILIPEATSTMVFKHIEEVRQKI--SQMSFS 503 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 P +T SAGIA +EP RAD ALY AK +GRN ++ Sbjct: 504 --PVEKLTFSAGIATLRVEEPFKEWFQRADSALYQAKGAGRNCIIT 547 >gi|332702791|ref|ZP_08422879.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay] gi|332552940|gb|EGJ49984.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay] Length = 427 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G +N +F + Y LS+ FDID FK+IND GH GD+V+ L Sbjct: 273 DHLTGAMNRMSFQEFLSEEMKRATRYGTPLSVAMFDIDDFKRINDELGHDAGDRVLVGLV 332 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + R GGEEF A G +E A L LR +IE+ Q G +T Sbjct: 333 KLVEANIRELDRLARWGGEEFMLLAPGCGPEEMAKLGEKLRALIESGQ----PGGVGRVT 388 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S G+++ + + ++ RAD+ALY+AK+ G+N V Sbjct: 389 CSFGVSDFAPGDTGADLLRRADEALYLAKRRGKNTVTTL 427 >gi|218528564|ref|YP_002419380.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] gi|218520867|gb|ACK81452.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] Length = 506 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 12/227 (5%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98 + + I N+ L + + + I++ + LV+ +T++L L + G L+ Sbjct: 265 VGDLPLILNVALAVDEVEAGWRTKAIVIGTVVLVLCGLTVALSL--LFGRELRRRAAMQA 322 Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++LS D L+GL N F + S+G + LS++ D D+FK+ ND GH VG Sbjct: 323 ELARLSLTDALTGLPNRRRFDETFGRAVKSVGRTGKPLSLLVVDADHFKRFNDRHGHAVG 382 Query: 152 DKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D+V+ L+ L P V R+GGEEFA + + AA +A + + + + Sbjct: 383 DEVLRGLAHCLSASVHRPDDLVARVGGEEFALLLPDTDVEGAARIAAKVHETVATLGVAS 442 Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + +T+S G +A + + + RAD ALY AK +GRNR Sbjct: 443 AGLAAGGVTVSVGLAVANGAGADAMDDLYRRADAALYEAKAAGRNRT 489 >gi|241662833|ref|YP_002981193.1| PAS/PAC sensor containing diguanylate cyclase [Ralstonia pickettii 12D] gi|240864860|gb|ACS62521.1| diguanylate cyclase with PAS/PAC sensor [Ralstonia pickettii 12D] Length = 416 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 16/179 (8%) Query: 88 SILKELFISYNRISQLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDID 137 S+ K++ R L R D L+GL N + + + L++ DID Sbjct: 239 SVSKDITKRVEREQALLRAATKDKLTGLHNRHHGEQLLAERYKTARTLQRPLTLAMCDID 298 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK+IND FGHP GD+V+A ++D L + V R GGEEF S+ +A LA Sbjct: 299 HFKRINDEFGHPTGDRVLAEVADMLRQAVRSRDAVIRWGGEEFMIVLNECSQTDAVDLA- 357 Query: 198 DLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++I++ ++N I +T+S G+A E I +I RAD ALY AK++GRNR+ Sbjct: 358 --KRILD--RVNAYEDEEIPTLTLSLGLATLAPNEAIDELIARADSALYEAKRTGRNRL 412 >gi|108758642|ref|YP_631920.1| response regulator [Myxococcus xanthus DK 1622] gi|108462522|gb|ABF87707.1| response regulator [Myxococcus xanthus DK 1622] Length = 318 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 12/181 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 R+ L++ D L+GL N A Y LS+V D+D+ K IND GH Sbjct: 132 QQRRLQILAQTDGLTGLANFRALSIRMEEEFRRAQRYQYPLSVVIIDLDHLKAINDGMGH 191 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VG++ I L+ QL F R GG+EF A + EAA+ A +R + + Sbjct: 192 DVGNRAILALATQLKHELRESDFAARFGGDEFVALLPHQTALEAAVFAERIRTGLRAVGV 251 Query: 209 NISSG-PS-IHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S G P+ +++S GIA+ +E +++ AD ALY AK+ GR+RVV F N Sbjct: 252 QKSDGRPAPFGLSVSVGIADHTFEGPREDTESLMKAADAALYEAKREGRDRVVVFGRPAN 311 Query: 264 N 264 + Sbjct: 312 S 312 >gi|269968827|ref|ZP_06182813.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269826577|gb|EEZ80925.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 456 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 10/148 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL N F S + +L S++ D D K+IND++GH VGD+VI ++D Sbjct: 308 DDLTGLFNRRVFQDS--EFKRRLETAPYSVIAIDGDRIKRINDHYGHHVGDEVIGIIADA 365 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + VF ++ R GG+EF A G S +++ILA LR +++++++ I +++S Sbjct: 366 MSKVFRNSDYLVRTGGDEFVAILPGCSISQSSILAKKLRSVVKDNRLKT---LDIEVSVS 422 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKK 249 GIA E + +I RAD+ LY KK Sbjct: 423 TGIAANELHETLQDVIVRADEDLYEMKK 450 >gi|188996073|ref|YP_001930324.1| diguanylate cyclase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931140|gb|ACD65770.1| diguanylate cyclase [Sulfurihydrogenibium sp. YO3AOP1] Length = 492 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 76/156 (48%), Gaps = 11/156 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N S I N+ +SI+ FDID+FK+IND +GH GD + ++ Sbjct: 336 DKLTGLFNRSIIDTLIQVEIERAKRNNKPISILLFDIDHFKKINDTYGHDKGDYALKTIA 395 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + +V R GGEEF A + A +A +R IEN +T Sbjct: 396 EIARRTLRKSDYVLRWGGEEFLAILPETDLDGATKVAEKIRSNIENYNFKDIG----RVT 451 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+ EP+ I RAD+ALY AK GRNRV Sbjct: 452 VSIGVTMLKIGEPLDNAIKRADEALYAAKNKGRNRV 487 >gi|190570797|ref|YP_001975155.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019676|ref|ZP_03335481.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357069|emb|CAQ54466.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994717|gb|EEB55360.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 458 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 10/166 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++S D L+ N F + L + + LS++ DIDYFK +NDNFGH GD++ Sbjct: 292 EMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRSLSLMILDIDYFKMVNDNFGHNAGDEL 351 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSG 213 + + ++ + R GGEEF ++ +A +A +RKII I + Sbjct: 352 LKEIQKRISENIRVTDLLARFGGEEFVVVMPDTNVSDAYTIAERIRKIIAKEPFILVGKN 411 Query: 214 PSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + ++T+S GI+ +R + + I RAD+ LY AK SGRNRVV Sbjct: 412 TTHNVTVSIGISAMQRSDLDDVKKFIVRADKYLYKAKNSGRNRVVT 457 >gi|119776003|ref|YP_928743.1| response regulator [Shewanella amazonensis SB2B] gi|119768503|gb|ABM01074.1| response regulator containing a CheY-like receiver domain and a GGDEF domain protein [Shewanella amazonensis SB2B] Length = 564 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 84/164 (51%), Gaps = 16/164 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I + + ID L+GL N F L ++ LS++ DIDYFKQ ND+ GH GD Sbjct: 402 IKRRNHIDVLTGLYNRRFFDEQLQQEYLKACRRHQPLSLLVLDIDYFKQFNDSRGHAEGD 461 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINIS 211 K + ++D L P R GGEEFA +S EA LA +R K++ +++ Sbjct: 462 KALQLVADILAGTVQKPGMACRYGGEEFALILPETSAGEAMQLAERIREKVVRDTK---- 517 Query: 212 SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253 I +T+S G +E K+ +S + AD+ALY AK GRN Sbjct: 518 --ERIELTVSIGCSEFDAKQHLSGFALFEAADEALYRAKADGRN 559 >gi|315126927|ref|YP_004068930.1| GGDEF protein [Pseudoalteromonas sp. SM9913] gi|315015441|gb|ADT68779.1| GGDEF protein [Pseudoalteromonas sp. SM9913] Length = 960 Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 82/156 (52%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N AF S + N+ +I DID+FK+IND + H +GD+VI ++ Sbjct: 803 DQLTDLPNRRAFDGWLADNFSDFKACNKSFAIAIMDIDHFKRINDGWSHLIGDQVICEVA 862 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHI 218 + L V R GGEEF S +A + LRK IEN NI+ G S + Sbjct: 863 NILKAHCEGEQEVARWGGEEFTFVFPDMSAVQAQEMCEKLRKCIENKNFSNIAEGLS--V 920 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 T+S G+++ + ++ RADQALY AK +GRNR Sbjct: 921 TVSFGVSDSGDVDDYDRLLSRADQALYKAKNNGRNR 956 >gi|307824789|ref|ZP_07655012.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Methylobacter tundripaludum SV96] gi|307734147|gb|EFO05001.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Methylobacter tundripaludum SV96] Length = 426 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 10/170 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPV 150 ++ +L+ D L+GL N F+ L K++ ++ D+D+FK++ND +GH Sbjct: 257 QLQKLASTDPLTGLFNRRVFLEKLELERAKVARLPHYSAVLLMLDLDFFKRVNDAYGHAT 316 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ RLGGEEFA G+ + +A I+A LR+ + + I+ Sbjct: 317 GDIVLKVFAEIARNTSRAIDIAARLGGEEFAILLSGADKNDALIMAERLREQVAKTVIDH 376 Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 +GP + IT+S G A + +++RAD ALY AK GRN+ F Sbjct: 377 DAGP-VQITVSIGAATLSVDDINGEAVLHRADVALYEAKDRGRNQTCWFG 425 >gi|291288444|ref|YP_003505260.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] gi|290885604|gb|ADD69304.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] Length = 643 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 84/170 (49%), Gaps = 13/170 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 SI L YNRI + +L++ I G Y + S++ DID+FK +NDNFG Sbjct: 486 SITDPLTKLYNRIK-------VDEILDYE--IEQAGRYGKDFSVLISDIDHFKDVNDNFG 536 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+ +++ L + V R GGEEF + ++AA +A LR IE+ Sbjct: 537 HQTGDEVLKIIAELLNDNTRSSDTVARWGGEEFLIIFTNTPLEDAATIAEKLRTKIESYD 596 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +T S G+A+ + E I RAD ALY AK RN VV Sbjct: 597 FPVGRT----VTASFGVAQYVNGEQKEHFIKRADDALYAAKNKSRNVVVA 642 >gi|311278699|ref|YP_003940930.1| diguanylate cyclase [Enterobacter cloacae SCF1] gi|308747894|gb|ADO47646.1| diguanylate cyclase [Enterobacter cloacae SCF1] Length = 458 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 9/210 (4%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-KELFISYNRISQLSRIDCLSGLL 113 +T Y + +L L ++S + + + +I+ IL K Y Q S D L+ L Sbjct: 244 ITSEYSTDNMLYRTRMLEVLSTLVFVFILFINSFILYKNSNTKYKNAYQNSIRDHLTMLY 303 Query: 114 NHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 N F +L + LSI+ DID+FK IND +GH GDKVI F++ ++ + Sbjct: 304 NRRYFYDALMKLIPCITVKNPLSIIVCDIDFFKSINDKYGHQHGDKVIQFIAIKIQSLLR 363 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGPSIHITISAGIAE 226 + R+GGEEFA G +E+ A I+A + + ++ N S ITIS GI Sbjct: 364 QNDILARIGGEEFALLLPGVNEENAKIIAERICHAVSQHDSKNTDIHQSERITISMGIYS 423 Query: 227 RCHKEPISTI-IYRADQALYVAKKSGRNRV 255 + I RAD A+Y AK +GRN V Sbjct: 424 ATDNTMTEDVYISRADDAMYKAKHAGRNCV 453 >gi|254456732|ref|ZP_05070160.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207085524|gb|EDZ62808.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 387 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 7/160 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +L+ D L+ L A + + K S+ DID+FK+ ND +GH GD+V+ ++ + Sbjct: 228 RLAFYDELTALPGRRALVEDMAKLGRKYSLAMCDIDFFKKFNDTYGHDTGDEVLKMVASK 287 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIHI 218 V G R GGEEF +E+ + + LR+ I ++ N S I I Sbjct: 288 FSEVSGGGK-AYRYGGEEFVILFPSKESEESFVHVDALRQNIASTPFSVRNKQSTKKIFI 346 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 +SAGI + K+P + ++ RAD ALY AKK+GRN+V+ Sbjct: 347 NVSAGITQYTTKDKDPFA-VMKRADNALYKAKKAGRNQVI 385 >gi|190893470|ref|YP_001980012.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190698749|gb|ACE92834.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 384 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 10/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 S N++++L+ D L+G LN + +LGS + +S++ DID+FKQ+ND GH GD Sbjct: 215 SRNQLTELAHHDPLTGALNRGGLAQHLPALGS--QPVSLLIIDIDHFKQLNDRHGHAAGD 272 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + + + R GG+EF A S ++A +A +R + + Sbjct: 273 EVLRLFASVSRSIMRPHDLLARQGGDEFLAVLKNLSREDAVAIAERIRL---DFAAAVMQ 329 Query: 213 GPSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 P + + T+S G+A R ++++AD+ALY +K+ GRNRV F + Sbjct: 330 RPDLGVFPTLSIGVATRESDGDFEGLMHKADEALYRSKREGRNRVEAFRE 379 >gi|297583364|ref|YP_003699144.1| diguanylate cyclase [Bacillus selenitireducens MLS10] gi|297141821|gb|ADH98578.1| diguanylate cyclase [Bacillus selenitireducens MLS10] Length = 368 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 13/174 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFI---------SSLGSYNEKLSIVFFDIDYFKQ 141 +EL + + +LS++D +GL NH F SS SY +L+++ DID FKQ Sbjct: 194 QELMVRNTIMERLSKVDAPTGLYNHKTFQEYLAYLFEQSSTSSYRFQLAML--DIDNFKQ 251 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND +GH VGDK++ ++ + R GGEEF S + A + +R Sbjct: 252 VNDTYGHAVGDKILERIAGIIQANVDANDIASRYGGEEFGVLFTDCSFETALHVVETIRL 311 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IE G ++T+S G+ E +E + +AD LY+AKK+G+NR+ Sbjct: 312 EIERLPHEEMGGR--NVTVSIGLVEYTDEEQAPVLFEKADTLLYLAKKNGKNRI 363 >gi|42520116|ref|NP_966031.1| response regulator PleD [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409853|gb|AAS13965.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 460 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++S D L+ N F + L + + +LS++ DIDYFK +ND+FGH GD+ Sbjct: 291 AEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRRLSLMILDIDYFKIVNDSFGHSAGDE 350 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ + ++ + R GGEEF ++ +A +A +RKII ++ Sbjct: 351 LLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTNVSDAYTIAERIRKIIAKKPFILADK 410 Query: 214 PSIH-ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 + H +T+S GIAE + I I RAD+ LY AK SGRNRVV Sbjct: 411 NTTHDVTVSIGIAEMQESDLDNIKEFIVRADKYLYKAKNSGRNRVVT 457 >gi|85711692|ref|ZP_01042749.1| Signaling protein with a ligand-binding sensor domain and GGDEF domain [Idiomarina baltica OS145] gi|85694552|gb|EAQ32493.1| Signaling protein with a ligand-binding sensor domain and GGDEF domain [Idiomarina baltica OS145] Length = 999 Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 8/159 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+R D L+ L N AF L + LS+ D+D+FK IND F H +GD+V+ Sbjct: 838 LARQDSLTQLGNRRAFDEQLQYEFKRCERSEQPLSLAIIDVDHFKSINDRFLHVIGDQVL 897 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 LS L + ++ R GGEEFA ++ +EA A +R+ IE++ Sbjct: 898 IELSALLSNMLRDIDYIARWGGEEFALLMPETTAKEALQAAERIRQRIEDTSYQ-HLADE 956 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S G+A H S ++ AD+ALY AK+SGRNR Sbjct: 957 LAVTVSIGVASSEHYPNHSALLVAADKALYKAKQSGRNR 995 >gi|95928635|ref|ZP_01311382.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans DSM 684] gi|95135425|gb|EAT17077.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans DSM 684] Length = 301 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 19/219 (8%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLGYISGSI-LKELF--ISYNR--------ISQLS 104 +P Y+ + V +S+ IS+L I ELF IS +R + QL+ Sbjct: 82 SPRAAQVYLHHKQGHRVPVSVRISVLTDETGAVIGAAELFSDISDHRANELRVKELEQLA 141 Query: 105 RIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAF 157 +D L+ L N S L + + ++ FFDID+FKQIND +GH GD V+ F Sbjct: 142 LVDKLTQLANRRYIESQLEKHLTEFRRTQLPFAVYFFDIDHFKQINDTYGHDAGDTVLKF 201 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L+ L+ GR GGEEF A + LR ++E S + + Sbjct: 202 LAKTLIDNGRAFDIYGRWGGEEFIAIIRNLDGENLLTFGERLRMLVEQSYLKWGE-HRLA 260 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G + + + ++I RAD+ LY +KK+GRNR+ Sbjct: 261 VTVSLGGTLAQNDDTLDSLIKRADRLLYTSKKNGRNRLT 299 >gi|325969963|ref|YP_004246154.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta sp. Buddy] gi|324025201|gb|ADY11960.1| diguanylate cyclase with PAS/PAC sensor [Spirochaeta sp. Buddy] Length = 306 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 5/168 (2%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 + ++ +LS +D L+GL N F+ + + + I+ DID FK +ND +GH GD Sbjct: 135 HKKLRELSYVDPLTGLYNRRYFLERVRIHLMEKGEAHIMLCDIDRFKDVNDQYGHLAGDA 194 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + V + RLGG+EF A ++++A + LRK +E + I S Sbjct: 195 VLKEFARIARDVLKHNHAIARLGGDEFVMALTDLTDEQAYEVGESLRKRVEETSIYYQS- 253 Query: 214 PSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I IS GIA+ ++ S +I AD+ALY AK +G+NRV FSD Sbjct: 254 TVLSICISIGIAKLSFEDLEKSELIADADRALYQAKAAGKNRVCLFSD 301 >gi|312884160|ref|ZP_07743872.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368208|gb|EFP95748.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 337 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 5/162 (3%) Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + Q + D L+ L N +F I++L +KL ++ D+D+FK NDN+GH +GD V+ Sbjct: 174 VQQDALFDGLTSLYNRRSFDQDINALYQSEQKLCLILADVDHFKAFNDNYGHLLGDAVLK 233 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPS 215 L+ L + R GGEEFA + A A +R+ E S + SG Sbjct: 234 GLARTLQRGCRDGISAYRFGGEEFALIVPNKPLRIARQFAETMRRATEKLSVKDRRSGKH 293 Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +ITIS G+AE KE + ++I RAD LY AK GRNRV+ Sbjct: 294 VGNITISLGVAELQEKESVESLIERADGLLYEAKSLGRNRVM 335 >gi|222148304|ref|YP_002549261.1| response regulator PleD [Agrobacterium vitis S4] gi|221735292|gb|ACM36255.1| two component response regulator [Agrobacterium vitis S4] Length = 457 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 20/216 (9%) Query: 60 GLEYILVENLSL-----VIISITISLLLGYISGSILKELFISYNRIS-----QLSRIDCL 109 G EY++V L L ++ + + LL + ++ + R S +L+ D L Sbjct: 239 GEEYLIVRALDLGVNDYIVRPVDTNELLARTLTQLRRKRYNDRLRSSVQQTIELAVTDDL 298 Query: 110 SGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 +GL N + + E+ LS+ DID FK +ND +GH GD V+ + ++ Sbjct: 299 TGLHNRRYLDTHIKVLFERSSLRKQPLSVCLVDIDRFKLVNDTYGHEAGDDVLREFAARI 358 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 R GGEEF +S++ A +A LR+++E + SG +++T S Sbjct: 359 RATVRGADLACRYGGEEFVVVMPDTSQEMAGTVAERLREMVEKKPFRLQSGGELNVTASL 418 Query: 223 GIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256 GIA + P ++ +AD+ALY AK GRNRVV Sbjct: 419 GIATAGDEVASP-EQLLRQADRALYQAKTEGRNRVV 453 >gi|149910113|ref|ZP_01898760.1| hypothetical protein PE36_13142 [Moritella sp. PE36] gi|149806838|gb|EDM66800.1| hypothetical protein PE36_13142 [Moritella sp. PE36] Length = 399 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 108/247 (43%), Gaps = 19/247 (7%) Query: 28 MIYFSIFFSIFIATVIFIANIFLFYIGLT-----------PFYGLEYILVE-NLSLVIIS 75 M Y I S + + IA + LF + ++ P LEYI N + VI Sbjct: 146 MAYRDIPLSFTLTPYLIIAMLGLFPLTVSGGVALLSVISLPLAMLEYIQYSGNYTAVIDK 205 Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128 + + +L G I + + ++ + S +D L+GL+N + + + Sbjct: 206 LWLFVLFGGICLWLQSGQMVMLMKLYRESTVDSLTGLINRRVLMRQVTGIAKNSNAAQGS 265 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 S++ FD+DYFK++ND +GH VGDKV+ +S L + R GGEEF Sbjct: 266 FSVMMFDLDYFKRVNDTYGHMVGDKVLVKVSSLLKQELRNYDVIARFGGEEFLVVMPHLE 325 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 +A +A + + I S + I T S G+ + E I + R D LY AK Sbjct: 326 LAQATQVALRVAEAIRKSSVMTDEQQEISFTTSIGVTQYIADESIVQLFKRVDDLLYQAK 385 Query: 249 KSGRNRV 255 GR+RV Sbjct: 386 VQGRDRV 392 >gi|99035891|ref|ZP_01314942.1| hypothetical protein Wendoof_01000220 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 460 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++S D L+ N F + L + + +LS++ DIDYFK +ND+FGH GD+ Sbjct: 291 AEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRRLSLMILDIDYFKIVNDSFGHSAGDE 350 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ + ++ + R GGEEF ++ +A +A +RKII ++ Sbjct: 351 LLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTNVSDAYTIAERIRKIIAKKPFILADK 410 Query: 214 PSIH-ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 + H +T+S GIAE + I I RAD+ LY AK SGRNRVV Sbjct: 411 NTTHDVTVSIGIAEMQESDLDNIKEFIVRADKYLYKAKNSGRNRVVT 457 >gi|172057395|ref|YP_001813855.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15] gi|171989916|gb|ACB60838.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15] Length = 374 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 13/207 (6%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQL----SRIDCLSGLLNHSAFISSLG 123 +L L++ + TI L +G +S S+L F + NR +L S D L+GL N + + Sbjct: 160 SLRLLLATWTIGLAVGVLS-SMLTLDFQTLNRQVELYKQSSERDHLTGLYNRRVWDTRTA 218 Query: 124 SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ +++ DID+FK +ND +GH GD V+ ++ L+ R+GGEEF Sbjct: 219 GLEQEGRIYNVLALDIDHFKHVNDTYGHGNGDFVLQQFANILMEETRPHDITVRIGGEEF 278 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIY 238 + + +AN +R+ I + + + P I +T S GIA ++ H + ++ + Sbjct: 279 MILIYDLTPSKIIKVANRIRERIAHERFQLDGFPDITVTASIGIAHGKQIHIQHMNGL-- 336 Query: 239 RADQALYVAKKSGRNRVVCFSDIENNT 265 AD+ALY AK+ GRNR + F+ ++ + Sbjct: 337 -ADEALYTAKQQGRNRTILFNQLDQQS 362 >gi|317052049|ref|YP_004113165.1| diguanylate cyclase [Desulfurispirillum indicum S5] gi|316947133|gb|ADU66609.1| diguanylate cyclase [Desulfurispirillum indicum S5] Length = 342 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 19/189 (10%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFIS-----SLGSYNEKLSIVFFDIDYFKQIND 144 ++ L Y + Q +R D L+GLLN LG + L +V DID FK+IND Sbjct: 157 MEALRQRYEELGQRARRDFLTGLLNRQVLEEMLQEICLGEHRHPLGLVAMDIDNFKEIND 216 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLR 200 +GH GD V+ + +L V R GGEEF L ++ Q LA +R Sbjct: 217 TYGHLCGDSVLKLFARKLGEYVRRDDLVFRFGGEEFIVILPQTNLAATYQ----LAEHIR 272 Query: 201 KIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + I ++ +G S+ +T S G A E +++ RADQA+Y +K++GRNR Sbjct: 273 RHIAEHVFHLEAGGQLSADISLRLTASFGAASHVAGESHESLLARADQAMYASKRAGRNR 332 Query: 255 VVCFSDIEN 263 + E+ Sbjct: 333 TTIAAHPEH 341 >gi|288920669|ref|ZP_06414972.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f] gi|288347939|gb|EFC82213.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f] Length = 1299 Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 10/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +R+ +R D L+GL N S F+ L S ++++ D+D FK IND+FGH GD Sbjct: 440 DRLGHQARHDLLTGLANRSGFVDRLASALAVSTESSSAVLYLDLDGFKPINDSFGHAAGD 499 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 +V+A + +L + GRLGG+EFA S A+++A+ ++I I+ Sbjct: 500 RVLAIIGARLAALLREGDLAGRLGGDEFAMLLRDSDLATASLVAD---RVISAVAEEITL 556 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + + S GIA R + +I+ AD A+Y AK+ G RV Sbjct: 557 EGECVQVGASVGIAMGRPGRSRADELIHAADTAMYAAKRDGGGRV 601 Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 11/162 (6%) Query: 107 DCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +AF ++ G ++F D+D FK +ND FGH +GD V+ + Sbjct: 1139 DPLTGLPNRAAFNRHLAAVAEHGQAGTSFGVLFIDLDNFKPVNDRFGHAIGDDVLRVIGA 1198 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHIT 219 ++ V RLGG+EFA E +A ++ +I+E+S+ I+ +G +I + Sbjct: 1199 RIGAASRRTDMVSRLGGDEFAVLI---DEADADLVCAISARILESSRQPIALAGTTITLG 1255 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + GIA R + T + AD+A+Y AK+ GR R F+D Sbjct: 1256 ATVGIALCRVGTDDPETALRNADKAMYRAKRGGRGRYALFAD 1297 >gi|311693502|gb|ADP96375.1| diguanylate cyclase [marine bacterium HP15] Length = 363 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 8/161 (4%) Query: 107 DCLSGLLNHSAFISSLG-SYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L Y L S++ DID FK +NDN+GH VGD++I ++ Sbjct: 200 DALTGLANRREALEQLDIEYQRYLRNARPFSVLLMDIDLFKSVNDNYGHHVGDELIILVA 259 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + R GGEE+ ++ EA AN +R+ ++ GP I T Sbjct: 260 RTLREQCRKVDTLARWGGEEYLVLLPETNTGEALASANRIREAFAVRSVSTEQGP-IQAT 318 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 IS G+A E I ++ R+D+ALY AK GRNR + + Sbjct: 319 ISVGVASIRGSESIDRLLQRSDEALYRAKSEGRNRACGYEN 359 >gi|229825983|ref|ZP_04452052.1| hypothetical protein GCWU000182_01347 [Abiotrophia defectiva ATCC 49176] gi|229789725|gb|EEP25839.1| hypothetical protein GCWU000182_01347 [Abiotrophia defectiva ATCC 49176] Length = 484 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 12/173 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGD 152 N+I L+ +D L+ ++N +F++ ++ E + DID+FK IND GH GD Sbjct: 301 NQIISLATLDELTKIMNRKSFMARFDYFSKQHLLEGGHLFLIDIDFFKTINDTLGHAAGD 360 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + ++FL+ L G F+ R GG+EF + E+ + ++I E + Sbjct: 361 EALSFLATNLTACVGKDGFIARWGGDEFIGIFFSTVEEPITKIKTLSKEISE-----TET 415 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G H+T+S G+ ++ + +AD ALY +KK+GRN+V ++ EN T Sbjct: 416 GKRFHLTLSVGMTLIEDDLSLNKEVEKADIALYTSKKNGRNQVTLYN--ENQT 466 >gi|288941995|ref|YP_003444235.1| diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288897367|gb|ADC63203.1| diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 317 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 13/169 (7%) Query: 98 NRIS-QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 NR++ QL+R D L+ L N F+ L + + LS++ D+D+FK++ND FGH Sbjct: 151 NRLNEQLARTDALTQLPNRRYFMERLNHGVRQAQTRSHPLSVLMMDLDHFKRVNDTFGHA 210 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQI 208 GD+V+ ++ + GRLGGEEF + + A +A LR + + Sbjct: 211 AGDRVLVAFAELMRAQVRLSDLPGRLGGEEFGLYMFDAELEVAVSVAERLRAHVNLMRPL 270 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + PS+ I G+A E ++ RAD LY AK++GRNRV+ Sbjct: 271 DTDYRPSVSI----GVAALAPGEDTEQLLKRADDGLYRAKETGRNRVIA 315 >gi|323158378|gb|EFZ44423.1| diguanylate cyclase domain protein [Escherichia coli E128010] Length = 207 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 96/177 (54%), Gaps = 8/177 (4%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQ 141 YI +++ +F N + ++ D L+ N FI SL S + S++ DID FK Sbjct: 33 YIISTLMYYVFRKLNHANHMAIHDPLTNTYNRRYFIDSLKNISKHHDFSVIMLDIDNFKS 92 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GH +GD+VI ++ + +GRLGGEEF G++++ +A +RK Sbjct: 93 INDKWGHHMGDQVIVMVTRIIKKSIRKEDILGRLGGEEFGIIIKGNTQKLLLSIAERIRK 152 Query: 202 IIEN--SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNR 254 IE S+ +S GP IT+S G ++ + P S ++ AD+ALY AK++G+ R Sbjct: 153 NIEEQCSEKLLSHGPE-KITVSIGCFTSKENNFSP-SEMLVNADKALYQAKRTGKTR 207 >gi|311067396|ref|YP_003972319.1| putative diguanylate cyclase or phosphodiesterase [Bacillus atrophaeus 1942] gi|310867913|gb|ADP31388.1| putative diguanylate cyclase or phosphodiesterase [Bacillus atrophaeus 1942] Length = 359 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 10/162 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+G+ N F + + ++ ++++ DID FK IND +GH GD+V+ L Sbjct: 195 DFLTGIFNKRKFEEVMHQFYKQAGRSPSFQFALIYLDIDRFKHINDQYGHHEGDQVLKEL 254 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +L + T R+GGEEFA + +A ++ +R+ + I +SSG + + Sbjct: 255 GARLKLNTRTSDPAARIGGEEFAVLLPNCTHAKAVQVSERIRQAVSGEPIILSSGDKLSV 314 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 T+S G A + + T+ ADQ LY AK++GRN+ VC+S Sbjct: 315 TVSLGTAHYPLNADQPETLPLIADQKLYQAKQTGRNK-VCYS 355 >gi|298249770|ref|ZP_06973574.1| diguanylate cyclase and metal dependent phosphohydrolase [Ktedonobacter racemifer DSM 44963] gi|297547774|gb|EFH81641.1| diguanylate cyclase and metal dependent phosphohydrolase [Ktedonobacter racemifer DSM 44963] Length = 960 Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 15/173 (8%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 Y ++ + D ++ L NH A I+ + + E ++++F D+D FK IND++GHP Sbjct: 560 YRENARAAVTDPITNLPNHRAVIAYIDTALREASETRESMALLFVDLDRFKLINDSWGHP 619 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENS-- 206 GD V+ + +L G FVGR GGEEFA S+ EA +A +R KI+ Sbjct: 620 AGDAVLHEVGIRLQDTVGITNFVGRYGGEEFAVILRHSNVSEAVQVAEKIRHKIMAKPFI 679 Query: 207 -QINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255 I+ ++ P + +TI+A I H E ++ +AD+A+Y AK SGRNRV Sbjct: 680 WDIDENATP-VELTITASIGISIYPYHGETREALLEQADRAMYRAKHSGRNRV 731 >gi|291279602|ref|YP_003496437.1| hypothetical protein DEFDS_1213 [Deferribacter desulfuricans SSM1] gi|290754304|dbj|BAI80681.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 389 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 17/173 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNFGH 148 ++S++ +D L+G+ N + +L EKL S++ D+D+FK ND +GH Sbjct: 220 KLSEMVHLDGLTGIGNKRYLLENL----EKLWQLHKDQNIISVLMIDVDFFKNYNDTYGH 275 Query: 149 PVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD+ + +S ++ VV VGR GGEEF + E A +A +RK IE + Sbjct: 276 IAGDECLKKISSTIMEVVRSEKDIVGRFGGEEFMVILPYADEVTAFKIAERIRKKIEQLK 335 Query: 208 I-NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I +ISS S +T+S G+A H + ++ AD+ALY AK GRNRV + Sbjct: 336 IEHISSKVSNVVTVSIGLATTIPHNDNYEKLVECADKALYTAKNLGRNRVEVY 388 >gi|153832965|ref|ZP_01985632.1| putative signal transduction protein [Vibrio harveyi HY01] gi|148870686|gb|EDL69592.1| putative signal transduction protein [Vibrio harveyi HY01] Length = 441 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 84/156 (53%), Gaps = 12/156 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GLLN + L + E+ SI FDID+FK IND +GH +GD V+ Q Sbjct: 287 DFLTGLLNRRGLENRLYALKEQQVSGSIAVFDIDFFKAINDTYGHEIGDVVLV----QFA 342 Query: 164 VVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ G + R GGEEF G++ EA + LR+ + + I I+ +I IT Sbjct: 343 LLCGAKTDLNFTLSRTGGEEFVLLMPGATRAEAVLFCEALRQEVAATPILINE-LNIEIT 401 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+A + + + AD+ALY AK++GRNRV Sbjct: 402 VSIGVAHFHSADDVRIALAEADEALYKAKQTGRNRV 437 >gi|269964647|ref|ZP_06178885.1| putative sensory box/GGDEF family protein [Vibrio alginolyticus 40B] gi|269830546|gb|EEZ84767.1| putative sensory box/GGDEF family protein [Vibrio alginolyticus 40B] Length = 632 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 90/172 (52%), Gaps = 21/172 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149 ++ LS D L+GL N F L Y + + FDID+FK+IND GH Sbjct: 466 KLRNLSEKDGLTGLWNRRKFEEQLAQYAGIIERYPDSPPACLALFDIDHFKRINDELGHD 525 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKVI +++ L+ + FV R+GGEEFA ++ +EA I+ N LR + Q++ Sbjct: 526 EGDKVICSVAETLLEEVRSTDFVSRVGGEEFAVIMPHTTLEEAEIVLNRLRVAV---QMH 582 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259 G IT+SAG ++ T Y+ AD ALY +K +GRN V +C S Sbjct: 583 SDRG----ITVSAGYSDLTSDR---TRTYKCADIALYESKSAGRNCVSLCHS 627 >gi|163791379|ref|ZP_02185790.1| hypothetical protein CAT7_10515 [Carnobacterium sp. AT7] gi|159873349|gb|EDP67442.1| hypothetical protein CAT7_10515 [Carnobacterium sp. AT7] Length = 365 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 17/216 (7%) Query: 53 IGLTPFYGLEYILVENL---SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109 I L F+ + IL+ +L SL+I+S + +++ ++K L + Y I + +++D L Sbjct: 148 ITLNLFFFYDDILLSSLICISLLILSSIVVIVVTAFIEDLIKNLHL-YLEIQEQAQMDYL 206 Query: 110 SGLLNHSAFISSLGSYNEKLSI-----VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 +GL N F + SI + DID+FK IND +GH G+ F+ QL V Sbjct: 207 TGLYNMRVFNKKWQTIQADKSIATTAFMMLDIDHFKWINDTYGHANGN----FILRQLAV 262 Query: 165 VF--GTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 + G P + R+GGEEF E A +R + + + + +G I+IT+ Sbjct: 263 ILQVGAPDNELIYRVGGEEFCIILNNLPYVEQKKTAEKIRASVASKEFLLENGAGIYITV 322 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+A K+ + + AD+ LY+AK GRN+V+ Sbjct: 323 SIGLAASTQKKDMKKLFRLADRCLYMAKDQGRNKVI 358 >gi|217971643|ref|YP_002356394.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella baltica OS223] gi|217496778|gb|ACK44971.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella baltica OS223] Length = 628 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 19/187 (10%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 L+EL ++++ S ID L+G+ N SAF L ++++ DID FK I Sbjct: 441 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRISRRQETPIALLMLDIDRFKLI 500 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD+ + ++ L P V R GGEEFA ++E A +A +R Sbjct: 501 NDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD 560 Query: 202 IIE--NSQINISSGP-SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + N + + + P +I I +SA I + C K ++ +AD+ALY AK GRN+V Sbjct: 561 AVASINFEWEVVAIPLTISIGVSADIVTNDQHCTK-----LLEQADKALYQAKNGGRNQV 615 Query: 256 VCFSDIE 262 FS ++ Sbjct: 616 SLFSSVQ 622 >gi|152984161|ref|YP_001347656.1| hypothetical protein PSPA7_2284 [Pseudomonas aeruginosa PA7] gi|150959319|gb|ABR81344.1| hypothetical protein PSPA7_2284 [Pseudomonas aeruginosa PA7] Length = 525 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 103 LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N +F+ + ++ + DID+FK IND GH GD+ + Sbjct: 360 LASTDTLTGLHNRHSFLHQAELMLKAAERFHHPCVALMLDIDHFKSINDGHGHLTGDRAL 419 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++ L +GRLGGEEFAA S +A +A LR +E +++ G Sbjct: 420 QRVAETLRQGLREVDLLGRLGGEEFAAMLPEISLDQALDVAERLRAGVEALRVSNPDGEP 479 Query: 216 IHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+A R + + +++ RAD ALY AK GRNR Sbjct: 480 LRMTVSIGVALRKDVGDDLESLLVRADSALYQAKSGGRNRT 520 >gi|302188967|ref|ZP_07265640.1| GGDEF [Pseudomonas syringae pv. syringae 642] Length = 695 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ + + E+ L + D+D+FK+IND +GH GDKV Sbjct: 533 QKALIDPLTGLPNRAAWGERLEQEMARWQEEKNSLLVCILDLDHFKRINDGYGHLAGDKV 592 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ L F+ R GGEEF + L ++LR +E+ + G Sbjct: 593 LKIVANVLSKRLRADDFMARFGGEEFVMLLPATPPATGLTLLDELRAAVESCPFHF-KGE 651 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNR+ Sbjct: 652 RVTITVSIGLTAFRPSEKSDTAIKRADQALYKAKENGRNRI 692 >gi|218674208|ref|ZP_03523877.1| putative sensory box GGDEF family protein [Rhizobium etli GR56] Length = 432 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 10/163 (6%) Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ D L+GL N SA ++ + +S+V FD+D+FK+IND GH GD V+ Sbjct: 216 AQTDLLTGLYNRRGFEVAASALLTQAEHGSRWISVVLFDLDHFKKINDVNGHDAGDAVLR 275 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ F + + R GGEEF A S+ +AAI+A +R IE ++I + SG + Sbjct: 276 HVAGIARENFRSFDLLVRHGGEEFLALLPDSTPDDAAIVAERVRLAIEMAEIPLPSGELL 335 Query: 217 HITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVV 256 +T S G A R + ++ RAD ALY AK SGRN VV Sbjct: 336 KVTASFGCAGRANDGASRNFEDLVKRADLALYAAKASGRNCVV 378 >gi|134292522|ref|YP_001116258.1| diguanylate cyclase [Burkholderia vietnamiensis G4] gi|134135679|gb|ABO56793.1| diguanylate cyclase [Burkholderia vietnamiensis G4] Length = 413 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 14/203 (6%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120 N+ L++ + I L S ++ ++ ++ R + + D L+G L+ F ++ Sbjct: 213 NVILLVAAAAIMPTLSMSSMMMVHDVLLADAR--EAANRDFLTGALSRKGFEAVAHVQLA 270 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI-AFLS-DQLVVVFGTPMFVGRLGGE 178 G +++ D+D+FK IND GH GD V+ F+ Q+ + G +GR+GGE Sbjct: 271 EAGKQGSPTALLILDLDHFKAINDTLGHAGGDAVLREFVRVTQMQLRRGD--VLGRMGGE 328 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EFA ++ +A +A LR + + ++GP + +IS G+A E + + Sbjct: 329 EFAVLLPATALDDARAIAERLRHAVAAQPMTTAAGPCRY-SISCGVAGWRAGETLDHLSA 387 Query: 239 RADQALYVAKKSGRNRVVCFSDI 261 RAD ALY AK+SGRNRV D+ Sbjct: 388 RADAALYEAKRSGRNRVCLHGDL 410 >gi|269962712|ref|ZP_06177056.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832549|gb|EEZ86664.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 131 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 2/131 (1%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 +V FDID+FK++ND +GH GD+VI S L + GR GGEEF ++++ Sbjct: 1 MVIFDIDHFKKVNDTYGHHTGDEVIRRTSSLLRKTARSSDVCGRFGGEEFTVLLPHTNQE 60 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249 +A+ A LRK IE + + I+ TIS G+ E + + E + + AD ALY AK+ Sbjct: 61 QASYFAERLRKRIEQEIVKVEDFL-INYTISIGVCEYKSYFESHTQWLKSADAALYRAKE 119 Query: 250 SGRNRVVCFSD 260 +GRN+ C D Sbjct: 120 NGRNQTCCHED 130 >gi|226304926|ref|YP_002764884.1| hypothetical protein RER_14370 [Rhodococcus erythropolis PR4] gi|226184041|dbj|BAH32145.1| hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 501 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 14/194 (7%) Query: 72 VIISITISLL-LGYISGSILKELFISYNRISQLS-RIDCLSGLLNHSAFI-------SSL 122 VI SI ++L+ LG I+ + E + R L+ D L+G+L+ AF+ ++ Sbjct: 266 VITSIAVTLIALGPIAVACATEERRAAERELFLAVEFDHLTGVLSRGAFLGHAESELAAA 325 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + ++ D+D+FK IND GH GD V+A +++ +GRLGGEEFA Sbjct: 326 ARTQSPVGLLMLDLDHFKSINDTHGHMTGDSVLANFAERAADRLSDGDLIGRLGGEEFAI 385 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRAD 241 S A D+ + + +Q+ S+ + T+S G+A H P ++T++ AD Sbjct: 386 LLPDCSYARAV----DVAEAVRGAQVEYSAESEVTSTVSVGVAWVDHATPTLTTLMSVAD 441 Query: 242 QALYVAKKSGRNRV 255 +ALY AK++GRN V Sbjct: 442 EALYEAKRAGRNLV 455 >gi|186472688|ref|YP_001860030.1| diguanylate cyclase [Burkholderia phymatum STM815] gi|184195020|gb|ACC72984.1| diguanylate cyclase [Burkholderia phymatum STM815] Length = 359 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 12/186 (6%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IV 132 L LG+ S + +L + LSR D L+ L N + L E+ ++ Sbjct: 164 LALGFTSYRLSLKLAQRTRELEHLSRTDGLTRLWNRRHWEGLLADEFERCRANRYASCLM 223 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK+IND GHP GD V+ +D L F +GR GGEEF G++ +EA Sbjct: 224 LIDLDHFKRINDTMGHPAGDAVLQSFADLLRSHFRGGDSIGRYGGEEFGVVLPGATLREA 283 Query: 193 AILANDL-RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKS 250 +A L +++ E ++ P TIS GIA+ P T + D++LY AK + Sbjct: 284 HTIAKVLVQRVREKTKEASKECPC---TISVGIAQLTDDLPDYHTWLQEVDRSLYQAKAT 340 Query: 251 GRNRVV 256 GR+R+V Sbjct: 341 GRDRIV 346 >gi|91225485|ref|ZP_01260607.1| putative GGDEF domain protein [Vibrio alginolyticus 12G01] gi|91189848|gb|EAS76121.1| putative GGDEF domain protein [Vibrio alginolyticus 12G01] Length = 456 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 10/148 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL N F S + +L S++ D D K+IND++GH VGD+VI ++D Sbjct: 308 DDLTGLFNRRVFQDS--EFKRRLETAPYSVIAIDGDRIKRINDHYGHHVGDEVIGIIADA 365 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + VF ++ R GG+EF A G S +++ILA LR +++++++ I +++S Sbjct: 366 MSKVFRNSDYLVRTGGDEFVAILPGCSISQSSILAKKLRSVVKDNRLKT---LDIEVSVS 422 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKK 249 GIA E + +I RAD+ LY KK Sbjct: 423 TGIAANELHETLQDVIVRADEDLYEMKK 450 >gi|27365860|ref|NP_761388.1| diguanylate cyclase [Vibrio vulnificus CMCP6] gi|27362009|gb|AAO10915.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio vulnificus CMCP6] Length = 320 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 20/183 (10%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDY 138 S + LKE + + +S++SR D L+GL N + + SL ++ S+V FDID+ Sbjct: 142 SKTHLKE---TNHHLSEISRRDGLTGLFNRAFWEQSLKEEFSRMQFLDTPSSLVIFDIDH 198 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK++ND +GH GD+VI + L GR GGEEF +S +A + Sbjct: 199 FKKVNDTYGHHAGDEVIRRTASLLKKTARNSDLCGRFGGEEFTVMLPHTSADQARYFSER 258 Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRN 253 LRK IE + + +I+ TIS G+ E H E + AD ALY +K+ GRN Sbjct: 259 LRKRIEQEIVCVEKF-AINYTISLGVCEFDAKFTSHTEWLKA----ADSALYHSKEGGRN 313 Query: 254 RVV 256 + Sbjct: 314 QTT 316 >gi|317054192|ref|YP_004118217.1| diguanylate cyclase [Pantoea sp. At-9b] gi|316952187|gb|ADU71661.1| diguanylate cyclase [Pantoea sp. At-9b] Length = 369 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 15/204 (7%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQ----LSRIDCL------SGLLNHSA 117 N II + +L+L Y +L+ ++ R Q +SR+D L +G N A Sbjct: 165 NPRFAIIWLIFTLILLYGRYMLLRWFNEAWQRYEQNQLLISRLDILAHQDGLTGTANRRA 224 Query: 118 FISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVG 173 L + S++ D+DYFK+ ND++GH GD+ + ++ L TP VG Sbjct: 225 LEQHLAQAITQQRPFSLIMLDVDYFKRYNDHYGHQAGDECLVAVAAVLKEAVRTPEDVVG 284 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEP 232 R GGEEF L ++ +A +A +++ ++ + + S + +T+S GIA Sbjct: 285 RYGGEEFVVMLLDATAAQAEAVAERIQQQLQQRGLAHAKSEVAAQVTVSQGIASAAPGRT 344 Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256 +I +ADQALY AK+ GRNR V Sbjct: 345 ADQLIAQADQALYRAKQQGRNRWV 368 >gi|187928260|ref|YP_001898747.1| PAS/PAC sensor containing diguanylate cyclase [Ralstonia pickettii 12J] gi|187725150|gb|ACD26315.1| diguanylate cyclase with PAS/PAC sensor [Ralstonia pickettii 12J] Length = 416 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 16/179 (8%) Query: 88 SILKELFISYNRISQLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDID 137 S+ K++ R L R D L+GL N + + + L++V DID Sbjct: 239 SVSKDITKRVEREQALLRAATKDKLTGLHNRHHGEQLLAERYRTARTLQRPLTLVMCDID 298 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK+IND FGHP GD+V+A ++D L + V R GGEEF S+ + LA Sbjct: 299 HFKRINDEFGHPTGDRVLAEVADMLRQAVRSRDAVIRWGGEEFMIVLDECSQTDTVDLA- 357 Query: 198 DLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++I++ ++N G +T+S G+A E I +I RAD ALY AK++GRNR+ Sbjct: 358 --KRILD--RVNAHEDGEVPALTLSLGLATLAPDEAIDELIARADSALYDAKRAGRNRL 412 >gi|114045907|ref|YP_736457.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113887349|gb|ABI41400.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 625 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 13/185 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142 L+EL ++++ S ID L+G+ N SAF L + + ++++ DID FK I Sbjct: 440 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSI 499 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD+ + ++ L P V R GGEEFA ++ A +A ++R Sbjct: 500 NDQFGHLAGDQALKVIATTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAENIRD 559 Query: 202 IIENSQINIS-SGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + I ++ G I +T+S G++ + + + ++ +AD+ALY AK SGRN+V + Sbjct: 560 AV--TSIGLAWEGKPIPLTVSIGVSADVISNDQHSTELLEQADKALYQAKNSGRNQVKLY 617 Query: 259 SDIEN 263 + + Sbjct: 618 APAQT 622 >gi|304438520|ref|ZP_07398460.1| diguanylate cyclase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368603|gb|EFM22288.1| diguanylate cyclase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 600 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 12/166 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGD 152 + + ID L+G+ N + F S++ + E LS+V FDID+FK IND +GH GD Sbjct: 401 VKKRMEIDPLTGVYNRNRFPSAMRDFTKIARDTGEPLSLVMFDIDHFKSINDTYGHDAGD 460 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + + + R GGEEF L +A AN +R+ + +++ + Sbjct: 461 EVLFGFAQTIRSFLDRRHILIRWGGEEFILLCLHYDGAKAQAFANQIREGVAKARLLTAQ 520 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +T S GI + + ++ RAD ALY +K+ GRNR+ C Sbjct: 521 ----QVTCSGGIGVWHGPDDDAAALVKRADTALYASKEGGRNRISC 562 >gi|254718593|ref|ZP_05180404.1| GGDEF domain protein [Brucella sp. 83/13] gi|265983569|ref|ZP_06096304.1| predicted protein [Brucella sp. 83/13] gi|306839889|ref|ZP_07472687.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653] gi|264662161|gb|EEZ32422.1| predicted protein [Brucella sp. 83/13] gi|306405075|gb|EFM61356.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653] Length = 381 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 13/164 (7%) Query: 101 SQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 S+ S ID LS + N F + + +I+ D+DYFK++ND +GH GD+V Sbjct: 219 SEQSEIDALSQIYNRRGFDRHVMRRLMRKGPDTPYAIIMSDLDYFKRVNDTYGHDCGDRV 278 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 I L R+GGEEF LG+ A+ A+DL + + + +S SG Sbjct: 279 IEAFGGLLRTHLPKLAVAARMGGEEFVVFMLGAD----AVAAHDLAQTLRTTMTALSFSG 334 Query: 214 PSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T S G+AE E + I RAD ALY AKK+GRNRV Sbjct: 335 DAAEWMPTASFGVAEHRVGEGLYDTIRRADGALYEAKKAGRNRV 378 >gi|271498992|ref|YP_003332017.1| diguanylate cyclase [Dickeya dadantii Ech586] gi|270342547|gb|ACZ75312.1| diguanylate cyclase [Dickeya dadantii Ech586] Length = 501 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 18/226 (7%) Query: 47 NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY---ISGSILKELFI-----SYN 98 NIFL + P +G + ++ +N + I+LL I+ SI L I +Y Sbjct: 275 NIFL-NTRVIPEFGWKLMVEQNSGPHDRQLWITLLKNTGISITASIAMLLLIWLTIGAYQ 333 Query: 99 R-ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R + ++ D L+GL+N AF + SI+ D+D+FK+IND +GH + Sbjct: 334 RRLELMATTDKLTGLMNRQAFEYIFRTLRMKQSAQQRTFSIILIDLDFFKKINDQYGHHI 393 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ + + R GGEEF S +A +A +R+ + + ++ Sbjct: 394 GDRVLVKTARLIQRAIRKTDSACRWGGEEFVLLLGDCSLHQAHRVAEKIRQAVHFALVS- 452 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I++TIS G+AE E I ++ RAD+ALY AK+ GR++ V Sbjct: 453 HRHQVINLTISCGVAESNPGESIDHLVQRADKALYQAKRQGRDQAV 498 >gi|258515904|ref|YP_003192126.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771] gi|257779609|gb|ACV63503.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771] Length = 368 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 13/236 (5%) Query: 35 FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94 ++I + IFI++I FY+ LT L +L L I +I ++ + Y++ +K L Sbjct: 132 YAICVIYAIFISSI-AFYLVLTNNNVLVKVL---LYFSIGTIIVTYFMYYLTEFHIK-LN 186 Query: 95 ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 Y + ++ D L+GL N F +++ + +S++F DID+FK+IND +G Sbjct: 187 SLYRKFRSEAKQDFLTGLNNVRGFDEEINFLMNNSKQTSHVVSLLFIDIDFFKKINDTYG 246 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD ++ L+D L + V R GGEEF+ +A +A +R IIE Sbjct: 247 HIAGDAILIELADLLPKLCSYKDTVSRNGGEEFSIILRDCPLSKAIEVAERIRSIIEKYP 306 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + + I+IT+S G+A + I+ +I +AD +LY AK++GRN+V D E Sbjct: 307 FKLLNNNIINITVSIGVANYPDTIDEINKLIEKADTSLYKAKRTGRNKVSIIQDDE 362 >gi|113971888|ref|YP_735681.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113886572|gb|ABI40624.1| diguanylate cyclase [Shewanella sp. MR-4] Length = 625 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 13/185 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142 L+EL ++++ S ID L+G+ N SAF L + + ++++ DID FK I Sbjct: 440 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSI 499 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD+ + ++ L P V R GGEEFA ++ A +A ++R Sbjct: 500 NDQFGHLAGDQALKVIATTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVAENIRD 559 Query: 202 IIENSQINIS-SGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + I ++ G I +T+S G++ + + + ++ +AD+ALY AK SGRN+V + Sbjct: 560 AV--TSIGLAWEGKPIPLTVSIGVSADVISNDQHSTELLEQADKALYQAKNSGRNQVKLY 617 Query: 259 SDIEN 263 + + Sbjct: 618 APAQT 622 >gi|27367394|ref|NP_762921.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6] gi|27358963|gb|AAO07911.1| FOG: GGDEF domain protein [Vibrio vulnificus CMCP6] Length = 337 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 59/162 (36%), Positives = 85/162 (52%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 N++S+L+ +D L+G N A +L + ++ DID+FK IND +GH GD V Sbjct: 177 NKLSKLATLDPLTGTNNRLALKHRYQALKTQGTAFFLLVLDIDHFKAINDEYGHDGGDCV 236 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + + V G V R GGEEF G S Q A A +R+ I ++ I+ G Sbjct: 237 LRSVVKTMAHVVGEEN-VFRQGGEEFCILLAGVSHQHALKTAETIRQNIGDTPIHYREG- 294 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I +T+S G+AE + I +AD LY AK GRNRVV Sbjct: 295 AISVTVSIGLAEAHASSCVDEINRQADANLYDAKSQGRNRVV 336 >gi|330446060|ref|ZP_08309712.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490251|dbj|GAA04209.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 446 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 107/220 (48%), Gaps = 18/220 (8%) Query: 44 FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103 F+ ++ + TP +I ++ LS+ IS +L Y SIL F+++ +L Sbjct: 241 FLPSVKKIKLPCTPIKSEYFITIDWLSV------ISWVLVY--SSILSLFFMAFEYSRKL 292 Query: 104 SRI----DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 + D ++GL+ F S + +++ DID FK INDN GH +GD VI +S Sbjct: 293 INLAISKDKMTGLMRRDVFERCYKSKQKDCAVIIVDIDNFKLINDNHGHLIGDDVIRKVS 352 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L+ T R GGEEF ++ E A A +RK I + I SG + ++ Sbjct: 353 RILLNSIRTDDIAIRWGGEEFVILLDIYNKDEIAKRAESIRKQIAENTI---SGMIVTVS 409 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I I++ P AD ALY AKK+GRN+VVC++ Sbjct: 410 IGVCISKDI---PFEAKFKHADDALYQAKKNGRNQVVCYA 446 >gi|167032619|ref|YP_001667850.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida GB-1] gi|166859107|gb|ABY97514.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida GB-1] Length = 796 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 14/206 (6%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P GL ++ E + + +L GY++ + +L + LS D L+G+ N Sbjct: 593 PRAGLRWVRGEA-TPEVGEQGCTLWHGYLTD--ISDLKGVEEELRALSVTDSLTGIHNRR 649 Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F L E+ L+++ DID+FK+IND FGH VGD+V+ L ++ Sbjct: 650 YFQERLKVELERAQRDGLALAVIMLDIDHFKRINDRFGHAVGDRVLRSLCQRIGQRLRRT 709 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 RLGGEEF GS ++A +LA +L + + N + +T S G+A Sbjct: 710 DVFCRLGGEEFMVLCPGSDAEQARLLALELWQGVRNMPVEGVG----RVTASFGVAGWRP 765 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 +E ++ RAD +Y AK++GR+RV Sbjct: 766 EEGADALLLRADAGVYAAKQAGRDRV 791 >gi|152994781|ref|YP_001339616.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150835705|gb|ABR69681.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 508 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N +A+ + + + + + DID+FK++ND +GH GDKV+ + Sbjct: 350 DSLTDLPNRTAYQDAILPLCKIMQKTQKSICLAVCDIDHFKKVNDTWGHLAGDKVLRLVP 409 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 Q+ + R GGEEF A ++ ++A A +R + + N+ P + I+ Sbjct: 410 KQIRSALLKEDLMFRYGGEEFVIAFPETTLEQAVERAEAIRLAVAKTPFNMQGEP-VSIS 468 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IS GIAE +E ++ RAD+ LY+AK++GRNRV+ Sbjct: 469 ISIGIAELQAQENPESLFARADKQLYMAKEAGRNRVMA 506 >gi|289549058|ref|YP_003474046.1| diguanylate cyclase [Thermocrinis albus DSM 14484] gi|289182675|gb|ADC89919.1| diguanylate cyclase [Thermocrinis albus DSM 14484] Length = 459 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 9/161 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F + + YN LS+V D+D FK +ND +GH +GD V+ L+ Sbjct: 299 DSLTGLPNRRFFFEHAQILLENAKRYNLPLSLVMLDVDNFKSLNDTYGHQLGDAVLINLA 358 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L + RLGGEEF + + A LA +R E S + + +G ++ T Sbjct: 359 NILKSMVRHSDVPARLGGEEFGILLPNTPLEGAVSLAQRIRIAFEGSVV-LHNGVEVYTT 417 Query: 220 ISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 +SAG+A + + +I RAD ALY AK G+NRV F+ Sbjct: 418 LSAGVATYTPDVKSLDELIRRADVALYRAKNMGKNRVEVFT 458 >gi|209770334|gb|ACI83479.1| hypothetical protein ECs2129 [Escherichia coli] Length = 315 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 99/189 (52%), Gaps = 10/189 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 ++ I I +S + I+ S++K++ + + L+++ SGL + A S + L Sbjct: 120 TMAICPIMVSFSVAAIN-SLMKQVALRAD-FDFLTQVYSRSGL--YEALKSPSLKQTQHL 175 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DIDYFK INDN+GH GDKV++ + + + G V R+GGEEFA A + Sbjct: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQAL 244 + ++A +RK +E ++++T+S G+ R + + ++ AD L Sbjct: 236 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCL 294 Query: 245 YVAKKSGRN 253 Y +KK GRN Sbjct: 295 YRSKKDGRN 303 >gi|117922165|ref|YP_871357.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117614497|gb|ABK49951.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 625 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 13/185 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQI 142 L+EL ++++ S ID L+G+ N SAF L + + ++++ DID FK I Sbjct: 440 LRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDIDRFKSI 499 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD+ + ++ L P V R GGEEFA ++ + A +A +R Sbjct: 500 NDQFGHLAGDQALKVIATTLQQHLKRPTDLVSRFGGEEFAIILPNTTAEGAIQVAESIRD 559 Query: 202 IIENSQINIS-SGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + I ++ G I +T+S G++ + + + ++ +AD+ALY AK SGRN+V + Sbjct: 560 AV--TSIGLAWEGKPIPLTVSIGVSADVISNDQHSTELLEQADKALYQAKNSGRNQVKLY 617 Query: 259 SDIEN 263 + + Sbjct: 618 APAQT 622 >gi|227821649|ref|YP_002825619.1| response regulator PleD [Sinorhizobium fredii NGR234] gi|227340648|gb|ACP24866.1| two component response regulator [Sinorhizobium fredii NGR234] Length = 455 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 9/177 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 +L S +L+ D L+GL N S L + LSI DID FK +ND Sbjct: 278 QLRASVQHTIELAITDDLTGLHNRRYLDSHLKLLIDRARARGRPLSICITDIDRFKLVND 337 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+V+ + ++ R GGEEF ++ + AAI+A LR ++E Sbjct: 338 THGHDAGDEVLREFARRVRATVRGADLACRFGGEEFVIVMPDTTPEMAAIVAERLRLMVE 397 Query: 205 NSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 IS G ++ ++T S GIA R + ++ RAD ALY AK +GRNRVV + Sbjct: 398 GRAFGISQGDTVLNVTASLGIATLRPGDDTPEALLKRADTALYEAKNNGRNRVVAAA 454 >gi|218676052|ref|YP_002394871.1| GGDEF family protein [Vibrio splendidus LGP32] gi|218324320|emb|CAV25654.1| GGDEF family protein [Vibrio splendidus LGP32] Length = 405 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N A L +N LS++ DID+FKQ+ND GH GD+V+ + Sbjct: 228 DSLTQLYNRRAMNEMLRREWMRSVRHNHPLSVIILDIDHFKQVNDQHGHQTGDQVLKKIG 287 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF + EA +A LR IIE ++ S ++T Sbjct: 288 IILQHNLRAADIPFRYGGEEFLIVLPDTRIGEACKVAEKLRIIIEETK--FWRQQSANLT 345 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S G++E ++ + ++I RAD+ALY AK++GRN V +D Sbjct: 346 ASFGLSELWAEDKVPSMIKRADEALYYAKENGRNTVCALTD 386 >gi|331005508|ref|ZP_08328886.1| response regulator receiver domain protein (CheY-like) [gamma proteobacterium IMCC1989] gi|330420700|gb|EGG94988.1| response regulator receiver domain protein (CheY-like) [gamma proteobacterium IMCC1989] Length = 594 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+GL N A+ + Y LS+ DID+FK++ND +GH +GDKV+ + Sbjct: 431 TDKLTGLPNREAYSERVHDEMLRWQRYQHPLSLAVLDIDFFKKVNDQYGHQMGDKVLKAV 490 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SSGPSI 216 S + F+ R GGEEF +S ++A + N R+ + +Q+ S G Sbjct: 491 SSSVANRLREVDFIARFGGEEFVLLLPETSAEDALHMLNRTRERLAKTQMKSKNSDGEET 550 Query: 217 H--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T S GIA+ + + RAD+ALY AK++GRN+ V Sbjct: 551 KFTVTFSIGIAQFTDGDTADDVFERADKALYEAKENGRNQCV 592 >gi|268679219|ref|YP_003303650.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268617250|gb|ACZ11615.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 315 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 93/183 (50%), Gaps = 15/183 (8%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEK---LSIVFFDID 137 ++ + +L + R+ + S ID L+ N + L EK + +V FD D Sbjct: 135 VADETIAKLKLEVERLERESNIDPLTKTHNRRVLVKDLEEVLSFGKEKDLDMHLVMFDAD 194 Query: 138 YFKQINDNFGHPVGDKVIAFLSD--QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 FK IND FGH GDK + FLS Q + GT ++ R GGEEF +S EA + Sbjct: 195 DFKSINDAFGHIAGDKTLIFLSKLIQNSLRRGTRIY--RYGGEEFVVILNRTSLDEAIKI 252 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + K +S++ + IH+T+SAGI + I+ +AD+ALY AKKSG+N Sbjct: 253 IDRILKETSDSKL-LYKNHDIHLTLSAGICSHRQNMSVDEILDKADKALYEAKKSGKN-- 309 Query: 256 VCF 258 CF Sbjct: 310 -CF 311 >gi|254457084|ref|ZP_05070512.1| ggdef domain protein, putative [Campylobacterales bacterium GD 1] gi|207085876|gb|EDZ63160.1| ggdef domain protein, putative [Campylobacterales bacterium GD 1] Length = 722 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 10/164 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +++ ID L+G+LN F I Y LS + DID FK +ND +GH +G Sbjct: 554 KLEKIAFIDILTGVLNRRKFGEISNKEIERSTRYGRNLSFLMLDIDNFKSLNDTYGHALG 613 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ S + + + + R+GGEEFA + A + A R+ I +SQ++I Sbjct: 614 DKVLQHFSSTCLNMARSIDVIARIGGEEFAIMLPEVDAEGAYLFAERFREKIYSSQVHIE 673 Query: 212 SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 I ++S GIA + + + I+ +AD+ALY AK+SG+N Sbjct: 674 D-KIIKYSVSIGIATLDGDKDKEVKDILQKADKALYRAKESGKN 716 >gi|152996045|ref|YP_001340880.1| response regulator receiver modulated diguanylate cyclase [Marinomonas sp. MWYL1] gi|150836969|gb|ABR70945.1| response regulator receiver modulated diguanylate cyclase [Marinomonas sp. MWYL1] Length = 312 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 9/165 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QL+ D L+G+ N +F +S Y +++ FD+D FK +ND FGH GD Sbjct: 141 LEQLASTDHLTGVANRRSFELMLDREMSFTRRYGVPMALAMFDLDKFKLVNDTFGHDAGD 200 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +S ++ + +GRLGGEEF E + + + RKI+ + I + Sbjct: 201 AVLVEVSKRIKIALRDCDIIGRLGGEEFGIILHNVKEDDVFKVFDRYRKIVADHPI-LYE 259 Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 G I IT S G+ K E ++ R DQ+LY AK +GRN+V+ Sbjct: 260 GAEIPITASIGVTMYAGKLEDKVALLKRVDQSLYEAKATGRNKVI 304 >gi|299069876|emb|CBJ41158.1| Diguanylate cyclase (GGDEF domain) fused with response regulator pleD (Stalked cell differentiation-controlling protein) [Ralstonia solanacearum CMR15] Length = 467 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 15/231 (6%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI---LKELF 94 ++A +IF A FL G+ + + S + + LG L+EL Sbjct: 240 WLAHIIFAAGFFLLSYGVVK----AFQTTRSFSTIYSQEELMTRLGEAKARTEDALRELQ 295 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147 +++++ L+ D L+GL N FI + + + S++ D+D FK IND +G Sbjct: 296 AAHHKLEHLAATDPLTGLANRREFIGRVEAEIARSRGGPTPFSVLALDLDRFKVINDTYG 355 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V+ + + + V R+GGEEF A +A +R I S Sbjct: 356 HQAGDHVLQRFAKKCLEAIRPHDGVARVGGEEFMVLLPKVPLHAAHAIAEQIRTAIAASP 415 Query: 208 INISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257 + G + +T+S G++E I I+ AD+ LY AK GRNRV+ Sbjct: 416 FELGPGHVVPVTVSIGVSEFGRDGANIDAILRSADERLYRAKHEGRNRVIA 466 >gi|298485896|ref|ZP_07003972.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159585|gb|EFI00630.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 425 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 95/188 (50%), Gaps = 22/188 (11%) Query: 85 ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128 + G+I + IS + ++L R D L+GL N A I + + Sbjct: 233 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 292 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 S++ DID+FK +ND +GHP GD+V+ ++ L R GGEEF SS Sbjct: 293 FSLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSS 352 Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 AA LA+ +R+ +E I N S +TIS G+A+ E +++I RAD+ALY A Sbjct: 353 LDHAAELADRIREGVEGLLIPNTGS-----VTISLGVAQLSPGETAASLIQRADKALYQA 407 Query: 248 KKSGRNRV 255 K+ GRNRV Sbjct: 408 KRLGRNRV 415 >gi|28900411|ref|NP_800066.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|28808722|dbj|BAC61899.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] Length = 480 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 95/167 (56%), Gaps = 7/167 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147 K+L ++ ++ +L+ D L+ L N I ++L S + ++++ FDID FK IND +G Sbjct: 297 KQLTLANQQLLELTLTDPLTKLYNRRHLIERLATLSSLQKNVTVMVFDIDDFKSINDKYG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD+ I ++D + + + R+GGEEFA SE+EA LA + + + Sbjct: 357 HLIGDQAIVAVADTAKSLTDERITLARIGGEEFALVTASLSEKEAETLAKAICSCVYDRP 416 Query: 208 INISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRN 253 + + +G +IH+++S G A ++E I ++ ADQ +Y K +G+N Sbjct: 417 V-LLNGQAIHVSVSLGCA--YYREFKGIINLHEADQLMYCGKMNGKN 460 >gi|258514837|ref|YP_003191059.1| response regulator receiver modulated diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771] gi|257778542|gb|ACV62436.1| response regulator receiver modulated diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771] Length = 314 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 12/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL ++ Q++ D L+G+ N + +S + + S++ DID FK IN Sbjct: 139 EELQQLLQKVEQIAITDFLTGITNRRFAIDRMNEELSRINRGEDGFSLLMIDIDNFKDIN 198 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH GD ++ + + + V + R GGEEF + +A I+A KII Sbjct: 199 DSHGHECGDYILKDVVNLIKSVLRNYDMMARWGGEEFLVMLPSTEINDAKIVA---EKII 255 Query: 204 EN--SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 N +QI G S H+TI+AG+A+ + + +II RAD+A+Y KKSG+N Sbjct: 256 SNVRTQIFTYKGNSFHVTITAGVAQHQAGDDLDSIIKRADEAMYHGKKSGKN 307 >gi|220933268|ref|YP_002512167.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] gi|219994578|gb|ACL71180.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] Length = 444 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 10/172 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+GL N AF ++ + + + S++ D+D FK +ND GH +GD Sbjct: 261 LERLSLTDPLTGLGNRRAFDQNIEADMALFRRHGDISSLLVLDLDCFKGLNDTHGHDIGD 320 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +D L V RLGGEEFA + E A +A LR+ +E +N+ Sbjct: 321 LVLCQFADVLQGHARETDEVCRLGGEEFAVFLRRADEDGAMAMAEKLREAVEAMVVNVDD 380 Query: 213 GPSIHITISAGIAERCHKEPIST--IIYR-ADQALYVAKKSGRNRVVCFSDI 261 I +T+S G+A + I++ +Y+ ADQA+Y +K++GRNRV + + Sbjct: 381 ALKISVTVSIGVATLSTRLRITSALALYKAADQAMYASKQAGRNRVTHYDSL 432 >gi|167951332|ref|ZP_02538406.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 622 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 96 SYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGH 148 S R QL++ D L+GL N H +L N L+++F D+D FKQIND FGH Sbjct: 190 SQERYQQLAQHDTLTGLPNRLLFHDRLNHALNRANRSKIGLALLFLDLDRFKQINDAFGH 249 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQ 207 P+GD+++A ++ L+ + RLGG+EF G ++ I +A L +I + Sbjct: 250 PMGDRLLALVAKDLLEALREEDTIARLGGDEFVVILEGVHGRDHVINVAEKLLAVI-GRE 308 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 ++ S +HI +S GI+ E ++T++ AD A+Y AK GRN Sbjct: 309 RSLDS-LQMHIGVSIGISLYPEDGEDVTTLVRNADAAMYQAKAKGRN 354 >gi|90021551|ref|YP_527378.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89951151|gb|ABD81166.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 603 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 68/264 (25%), Positives = 114/264 (43%), Gaps = 35/264 (13%) Query: 24 PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL- 82 P+ FM ++ I + F+ + G P Y ++ +L+ I L + Sbjct: 319 PYAFMAPVMTVLTLTIMPLFFVMGVLRLASGYRP---ARYFMLAWTALIFSVIVYVLKVF 375 Query: 83 -----------GYISGSILKELFIS------YNRISQLSRIDCLSGLLNHSAF------- 118 G+ GSI++ + +S + Q S D L+ + N F Sbjct: 376 GVLPRTFFTENGFQIGSIIEMVLLSLALGSRMTELKQQSHTDALTEIGNRRRFDDVFPVE 435 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 + L+++ DIDYFK++ND FGH GD+ + ++ + + PM R GGE Sbjct: 436 FERAQRNKQPLALLMIDIDYFKKLNDTFGHDAGDQALRAVATTIKTLTRKPMLPCRFGGE 495 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTI 236 EFA + A I+A +R+ I + +T+S G+A + + I Sbjct: 496 EFAVILPRTDSAAAKIVAERIRQTIAEKPMA-----KREVTVSVGVASTDMGYFTSSRAI 550 Query: 237 IYRADQALYVAKKSGRNRVVCFSD 260 + AD+ LY+AK+ GRNRV FS+ Sbjct: 551 MNAADECLYLAKEMGRNRVCLFSE 574 >gi|332533494|ref|ZP_08409357.1| GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505] gi|332037041|gb|EGI73499.1| GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505] Length = 617 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 11/180 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQI 142 L+EL + L+ D L+G+ N F L S E+ LSIV DID FK I Sbjct: 436 LRELEEKNRSLELLNTEDALTGIKNRRFFDKKLVMELRRSRREQTPLSIVMLDIDRFKNI 495 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH +GD+VI +SD + P+ V R GGEEF + + A +A +R Sbjct: 496 NDTYGHIIGDQVIKAVSDLIKDHLKRPLDEVARYGGEEFVVLLPNTPSEGAQDIAEKIRA 555 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR--ADQALYVAKKSGRNRVVCFS 259 I S + +++ I TISAG+ + + I+ AD+ALY AK+ GRN+V+ F Sbjct: 556 DISVSTVTVANN-DIQFTISAGVYTSIADDVSNPQIFTECADKALYYAKQHGRNQVITFP 614 >gi|313496500|gb|ADR57866.1| Diguanylate cyclase [Pseudomonas putida BIRD-1] Length = 645 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + +D L+GL N +A+ + + E L++ D+D+FK+INDN+GH GDKV Sbjct: 483 QKALLDPLTGLPNRAAWSERVEREMLDWQENGGHLAMAILDLDHFKRINDNYGHLAGDKV 542 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++DQL F+ R GGEEF ++ AA +A LR +E + G Sbjct: 543 LKIVADQLRKRLRGRDFIARFGGEEFVLLLPQTTPAVAAQVAEVLRATVEACPFHF-KGE 601 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT S G++ E ++ RAD ALY AK+ GRNRV Sbjct: 602 RVVITTSIGLSAFRSGERSDQVLKRADAALYRAKELGRNRV 642 >gi|310765223|gb|ADP10173.1| HmsT (Hemin storage system protein) [Erwinia sp. Ejp617] Length = 365 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 7/185 (3%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141 + ++++L+ LS +D L+GL N + L +K + ++ DID+FK Sbjct: 173 TRRLVRQLYEEKETYCDLSMLDPLTGLYNRRGLKNRLADILDKHTGNHYVLLLDIDHFKA 232 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 NDN+GH +GD+ + +S + + V R GGEEF ++E A A +R+ Sbjct: 233 YNDNYGHAMGDQALTRVSVAIRDAVRSRDIVTRYGGEEFLVLLTNATESMAIKQAERIRE 292 Query: 202 IIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +I ++ + H+TIS G+A + + AD+ALY+AK GRNRV+ Sbjct: 293 FVLGLEIPHRFNNQVATHVTISVGVAP-LMADDFDKALAHADRALYLAKSRGRNRVIHLQ 351 Query: 260 DIENN 264 D N Sbjct: 352 DALNR 356 >gi|293404969|ref|ZP_06648961.1| diguanylate cyclase yddV [Escherichia coli FVEC1412] gi|298380616|ref|ZP_06990215.1| diguanylate cyclase yddV [Escherichia coli FVEC1302] gi|300895690|ref|ZP_07114287.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1] gi|291427177|gb|EFF00204.1| diguanylate cyclase yddV [Escherichia coli FVEC1412] gi|298278058|gb|EFI19572.1| diguanylate cyclase yddV [Escherichia coli FVEC1302] gi|300360384|gb|EFJ76254.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1] Length = 460 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKISQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|188997382|ref|YP_001931633.1| diguanylate cyclase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932449|gb|ACD67079.1| diguanylate cyclase [Sulfurihydrogenibium sp. YO3AOP1] Length = 411 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 8/159 (5%) Query: 106 IDCLSGLLNHSAF---ISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+G N F I L ++ +++ D+DYFK+IND FGH GD+ + Sbjct: 254 IDPLTGAFNRRGFEIIIQKLLEISQITDAPITLAMADLDYFKKINDTFGHLAGDEALKHF 313 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + +V R+GGEEF + ++A + +RK +E + ++ G I I Sbjct: 314 VNIIKRNLRKSDYVFRIGGEEFLILLPNTELKDAVEIVERIRKDLEENSLHYD-GKEIKI 372 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T S G+AE ++ I+ II +AD+ LY AK+SGRN+VV Sbjct: 373 TASFGLAEVDKEKYINEIIKKADEKLYKAKESGRNKVVV 411 >gi|91227127|ref|ZP_01261611.1| putative sensory box/GGDEF family protein [Vibrio alginolyticus 12G01] gi|91188779|gb|EAS75066.1| putative sensory box/GGDEF family protein [Vibrio alginolyticus 12G01] Length = 626 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 89/172 (51%), Gaps = 21/172 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149 ++ LS D L+GL N F L Y + + FDID+FK+IND GH Sbjct: 460 KLRNLSEKDGLTGLWNRRKFEEQLAQYAGIIERYPDSPPACLALFDIDHFKRINDELGHD 519 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKVI +++ L+ + FV R+GGEEFA ++ +EA I+ N LR + Q+ Sbjct: 520 EGDKVICSVAETLLEEVRSTDFVSRVGGEEFAVIMPHTTLEEAEIVLNRLRVAV---QMR 576 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259 G IT+SAG ++ T Y+ AD ALY +K +GRN V +C S Sbjct: 577 SDRG----ITVSAGYSDLTSDR---TRTYKCADIALYESKSAGRNCVSLCHS 621 >gi|327441387|dbj|BAK17752.1| FOG: GGDEF domain [Solibacillus silvestris StLB046] Length = 521 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 85/162 (52%), Gaps = 8/162 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 N + + + ID L+ LLN + I L + ++V D+D+FK IND GH VGDKV Sbjct: 359 NTLEEETSIDSLTNLLNRATLEKRIQLLTEQRKDYTLVMLDVDWFKTINDTHGHIVGDKV 418 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L+ +L R GGEEF ++ +EA LR ++ QI +G Sbjct: 419 LQALASKLKESLKENELACRYGGEEFILVFTETTVEEAYERVELLRGNVQ--QIISPAGK 476 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T SAGIA H + II +AD+ALY AK++GRNRV Sbjct: 477 P--LTFSAGIANYPLHGVQMKNIIEKADEALYKAKENGRNRV 516 >gi|254457933|ref|ZP_05071360.1| ggdef/pas/pac-domain containing protein [Campylobacterales bacterium GD 1] gi|207085326|gb|EDZ62611.1| ggdef/pas/pac-domain containing protein [Campylobacterales bacterium GD 1] Length = 464 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSLG------SYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ L N F S L ++K+ S++ FD+D FK IND GH +GD V+ Sbjct: 305 DYLTELHNRRYFTSRLEEEVARIKRDKKVTSSLLMFDLDKFKLINDTLGHLMGDVVLKIF 364 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +D L GR+GGEEFA ++ +EA +LAN +R+ + N + I G SI+ Sbjct: 365 ADILKKNLRKSDIAGRIGGEEFAMILPSTNIREAKVLANRIREEVSNKKT-IIDGNSINF 423 Query: 219 TISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRV 255 T+S G+ + S + RAD ALY+AK GRNRV Sbjct: 424 TVSIGLTAIASDDANSDSAFARADTALYMAKGKGRNRV 461 >gi|163803659|ref|ZP_02197522.1| GGDEF family protein [Vibrio sp. AND4] gi|159172531|gb|EDP57393.1| GGDEF family protein [Vibrio sp. AND4] Length = 337 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LS L N AF + L ++ +++V DID+FK NDN+GH GD VI ++ +L Sbjct: 181 DGLSNLYNRRAFDNDLQMLIDNSQSMTLVLLDIDHFKGFNDNYGHLFGDTVIKAIARRLQ 240 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH-ITIS 221 + R GGEEFA S + A+ LR+IIE ++ + SG + IT S Sbjct: 241 QSCRDGISAYRFGGEEFALIVPNKSIRIGRQYADTLRRIIEKLRVRDKRSGSQVQNITAS 300 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE + + +++ +AD+ LY AK+ GRNRV+ Sbjct: 301 FGVAEYEVGDTLDSLVTKADKQLYEAKQLGRNRVM 335 >gi|317154323|ref|YP_004122371.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316944574|gb|ADU63625.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 457 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 9/167 (5%) Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +S+ D L+ + N F+ ++E +I+ DID+FK IND GH VGD+V+ Sbjct: 146 VSQQDPLTKVANRRFFMEHATRELTRGKRFHEPQAILIIDIDHFKTINDKHGHDVGDEVL 205 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ GR+GGEEFAA L +++ A I+A +R+ +E +N+ G Sbjct: 206 KAMATACSKALREVDVFGRIGGEEFAAMLLNTNDSVARIVAERVRESVERLSVNV-GGKE 264 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I TIS G+ + + AD+ALY AK+SGRNRV D+ Sbjct: 265 IPFTISIGLVSFLGGSNTLDDRMKMADKALYRAKESGRNRVEVLVDV 311 >gi|254501927|ref|ZP_05114078.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia alexandrii DFL-11] gi|222437998|gb|EEE44677.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia alexandrii DFL-11] Length = 759 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 103/218 (47%), Gaps = 30/218 (13%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 + PF G+ ++ + V+I++T + + K L +S + SR D LSGL N Sbjct: 278 INPFLGMAAFMI---TAVVIAVTA------FTRHMTKRLAVSEAQAVHTSRHDALSGLPN 328 Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 + F + S + ++++ D+D+FK IND GH GD VI + +L V G Sbjct: 329 RAHFHRLLTDMLQDTNSRGRETAVIYIDLDHFKDINDTLGHSAGDMVIVAVGKRLTHVLG 388 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-----GPSIH--ITI 220 V R+ G+EFA S E L I++ Q IS +H ++I Sbjct: 389 DNGIVARISGDEFAMVIPNSKSDEW------LEYILDQIQDEISQPIKIGARELHASLSI 442 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 A +A R +P ++ +AD ALY AK++GRNR F Sbjct: 443 GASVAPRDGIDP-DELLRKADIALYDAKENGRNRRSFF 479 >gi|218704961|ref|YP_002412480.1| putative diguanylate cyclase [Escherichia coli UMN026] gi|218432058|emb|CAR12946.1| putative diguanylate cyclase [Escherichia coli UMN026] Length = 347 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 168 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 221 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 222 DKFKEINDTWGHNTGDEILRKISQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 281 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 282 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 341 Query: 257 CFS 259 + Sbjct: 342 LWK 344 >gi|254474939|ref|ZP_05088325.1| GGDEF domain/pas/pac and gaf sensor domain protein [Ruegeria sp. R11] gi|214029182|gb|EEB70017.1| GGDEF domain/pas/pac and gaf sensor domain protein [Ruegeria sp. R11] Length = 496 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 8/164 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + + S D L+ L N F+ +L N SI+ FD D FK NDN GH Sbjct: 325 DELHDQSTRDPLTRLFNRRYFLEALRAEHTMAARKNTPFSILSFDADKFKAFNDNHGHDA 384 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ + D++ VF R GGEEF+ G+ + AA +A LR IE++ I Sbjct: 385 GDMVLRAIGDKMQEVFRNGETPCRFGGEEFSVLLPGADQATAANMAEALRLAIEDTSIRY 444 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 + +T+S G A H E ++ AD+ALY AK +GRN Sbjct: 445 GAATLPRVTVSIGTASYPDHGELPQDLLTAADRALYAAKAAGRN 488 >gi|85712181|ref|ZP_01043233.1| cyclic nucleotide phosphodiesterase, putative [Idiomarina baltica OS145] gi|85693989|gb|EAQ31935.1| cyclic nucleotide phosphodiesterase, putative [Idiomarina baltica OS145] Length = 303 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 8/163 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++ L+ D L+GL N AF L +I+ DID+FK IND FGH GDK Sbjct: 138 LTTLAETDSLTGLYNRRAFFRYVDELIKLRVQTAYFAIILLDIDHFKLINDRFGHEAGDK 197 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 +++ + L + V R GGEEF A G+S+ +A+ ++ +I + +N Sbjct: 198 LLSAIGKALRSLNNKNSVVARTGGEEFTIAVTGASQDALVAVAHQVQALISDITLNYFDA 257 Query: 214 PSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 ++ T S GIA + P I+ I+ AD ALY AK +GR R Sbjct: 258 -TLSCTASVGIATTNTQSPDINQIMRHADHALYRAKAAGRART 299 >gi|317152096|ref|YP_004120144.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316942347|gb|ADU61398.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 974 Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G N F + Y L+++ DIDYFK IND GH GD Sbjct: 809 MKRLATTDSLTGAANRHEFFRLAELELRRAMRYGHSLAVLMLDIDYFKSINDTHGHQTGD 868 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ LS + GRLGGEEFAA + ++A+ LR+ + ++ + Sbjct: 869 AVLKALSALVRTTLRDTDIFGRLGGEEFAAVLPETDLAGGVLVADRLRRELGALKVRLRD 928 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T+S G+ E R + I I RAD+A+Y AK+ GRNRV Sbjct: 929 -IEVMFTVSIGLTETRKSERLIDDAINRADEAMYKAKRMGRNRV 971 >gi|157963226|ref|YP_001503260.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157848226|gb|ABV88725.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 346 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 8/164 (4%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 L +SYNR++ L+ + SL +E+L ++ DID+FKQ+ND +GH GD Sbjct: 181 LTLSYNRLA-------LTKYFENVGSKPSLQELDEELHLLILDIDFFKQVNDEYGHEAGD 233 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ + + + G R+GGEEF + EA LA +R + ++ Sbjct: 234 TVLQECAKIISRIAGDKQ-TFRIGGEEFCVMIENKKQDEAIALAQLIRTKLAQHTFRLAE 292 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I+IT+S G++ + +++ +ADQ LY AK +GRN+V+ Sbjct: 293 QDNINITVSIGLSNYQPGMALPSLLRQADQRLYRAKHTGRNQVI 336 >gi|326794482|ref|YP_004312302.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326545246|gb|ADZ90466.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 435 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 3/125 (2%) Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +ND +GH VGD+V+ ++ L G + R GGEEFA EQ A + Sbjct: 302 FKNVNDQYGHQVGDQVLKHVAQSLSETLGDHGILARWGGEEFAVLLPYYDEQRARGMGEI 361 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 LR+ I+ + IHIT+S G+A E + ++ RAD ALY AK+SGRNRV+ Sbjct: 362 LRQSIDTAYF---EDQQIHITLSVGVARLGDDETGNQLLNRADMALYEAKESGRNRVIVA 418 Query: 259 SDIEN 263 +E Sbjct: 419 KSVEQ 423 >gi|254262169|emb|CAZ90498.1| Uncharacterized protein yneF [Enterobacter turicensis] Length = 511 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 105/202 (51%), Gaps = 15/202 (7%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--- 127 L I +I I L+ IS + + +L ++S+ + D L+G+ + S +L S +E Sbjct: 305 LGIATIAICPLIVSISVAAINKLMA---QVSRRADYDYLTGVYSRSGLHETLKSMDENGN 361 Query: 128 ---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 ++S++ DIDYFK IND++GH GD V+A ++++ + G V R+GGEEF Sbjct: 362 VPQEMSVMLLDIDYFKGINDSYGHECGDLVLAAFANKVNQIVGERGLVARMGGEEFVVFC 421 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-----HKEPISTIIYR 239 ++ +E +A ++R + + +T+S G+ + + + ++ + Sbjct: 422 PNAAAEEGYQIAEEIRTAVAQHPFEWKKN-RLWLTVSIGLGSQARLWSSYTDAFIQLMPK 480 Query: 240 ADQALYVAKKSGRNRVVCFSDI 261 AD+ LY++K +GRNR D+ Sbjct: 481 ADRYLYLSKNAGRNRTSAEPDV 502 >gi|255306089|ref|ZP_05350261.1| putative signaling protein [Clostridium difficile ATCC 43255] Length = 572 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 10/153 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ + N +F Y EK ++V DID FK INDN+GH GD VI +++ + Sbjct: 425 DGLTNVYNRKSFDIMYEKYREKDDNFALVMIDIDNFKLINDNYGHKFGDTVIKGITNTIC 484 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V+ V R GGEEF+ S E A + + +R I N + N + +TISAG Sbjct: 485 VMLEQDDKVFRYGGEEFSVLIRNKSGDEVADIIDSIRVAIANKKWN----DDVTVTISAG 540 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +A H ++ AD+ LY AK+ GRN+VV Sbjct: 541 VA---HVSDSKDVLEEADKNLYKAKQLGRNKVV 570 >gi|152982756|ref|YP_001352256.1| hypothetical protein mma_0566 [Janthinobacterium sp. Marseille] gi|151282833|gb|ABR91243.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 421 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 71/189 (37%), Positives = 91/189 (48%), Gaps = 25/189 (13%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EK 128 +I LLL Y E + NR L+ D LS LLN A +S+ G YN + Sbjct: 244 SIGLLLLYF------ERTVEENR--HLATHDELSKLLNRRAIVSA-GEYNLASATRLGHE 294 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+I F DID FK ND FGH GD VI ++ L T VGR GGEEF G + Sbjct: 295 LTIAFIDIDMFKHFNDKFGHAAGDTVIQEVAAILQQTCRTIDMVGRYGGEEFLIILPGVN 354 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALY 245 AAI+ L + + IH +TISAG+ + + + ++ RAD ALY Sbjct: 355 RDAAAIVGERLVDAVRQYRFM-----GIHPVTISAGLTTLPKTEQCTWTQLVRRADAALY 409 Query: 246 VAKKSGRNR 254 AK GRNR Sbjct: 410 EAKGLGRNR 418 >gi|152997335|ref|YP_001342170.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150838259|gb|ABR72235.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 556 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 18/176 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQIND 144 EL S + ++R D L+ + N A +L Y + +++ D D+FK++ND Sbjct: 385 ELEASNRSLEAIARKDPLTHIYNRLALDEALHKEYRQAQESKCPFAVIMIDADHFKRVND 444 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +FGH VGD V+ ++ L V G V R GGEEF + EA +A +R+ +E Sbjct: 445 SFGHTVGDLVLQKIAKLLTVQVGDKGIVARFGGEEFTVLLPNMNADEAKNIAEMIREALE 504 Query: 205 NSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +S G +++T S G+A + H E ++ RAD ALY AK+ GRNRVV Sbjct: 505 KEE--MSDG--LYVTASFGVAMYEIDDSHYE---QVLNRADAALYKAKEQGRNRVV 553 >gi|46579050|ref|YP_009858.1| response regulator/GGDEF domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|46448463|gb|AAS95117.1| response regulator/GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|311232896|gb|ADP85750.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio vulgaris RCH1] Length = 437 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 13/179 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144 +L R +L+ D L+GL F + + +++V D+D+FK++ND Sbjct: 242 DLLDLMRRNRELAERDELTGLYARRRFFERAADLHRHAARAGDAMAVVMLDVDHFKRVND 301 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD + L L F P+ GR GGEEF G+S Q R +E Sbjct: 302 TYGHVAGDLALRQLGMMLRRAFDEPVVAGRYGGEEFGLVVAGASVQGLPDRLEAFRHDVE 361 Query: 205 NSQINISSGPSI-HITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ +S G + ITISAG +A C P ++ RAD LY AK+ GRNRVV D Sbjct: 362 --RLEVSLGDRMFWITISAGCLLASACGSTP-DSLFARADALLYQAKQQGRNRVVVERD 417 >gi|302386188|ref|YP_003822010.1| diguanylate cyclase [Clostridium saccharolyticum WM1] gi|302196816|gb|ADL04387.1| diguanylate cyclase [Clostridium saccharolyticum WM1] Length = 482 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 8/152 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+ D L+GL N F+ + + E+ V D+D+FK +ND FGH GD+V+ + L Sbjct: 336 LATEDALTGLSNRRYFMEKVETRTEQGIFVIIDLDHFKSVNDTFGHVEGDRVLKAFGESL 395 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 F P V R GGEEFA G + +EA +R+ + + +N + +T SA Sbjct: 396 KETFA-PQTVCRYGGEEFAVFMNGLTMEEAFQQVEAMRE--KTAYMNFAR----KVTFSA 448 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 G+AE C +S + AD+ LY AKK+GRN+ Sbjct: 449 GMAE-CRNCNVSEALIIADRKLYEAKKNGRNQ 479 >gi|260772710|ref|ZP_05881626.1| GGDEF domain protein [Vibrio metschnikovii CIP 69.14] gi|260611849|gb|EEX37052.1| GGDEF domain protein [Vibrio metschnikovii CIP 69.14] Length = 370 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 10/167 (5%) Query: 100 ISQLSRIDCLSGLLN----HSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++ L+ D L+G N HSAF S N L ++ D+DYFKQIND FGH GDK Sbjct: 192 LTHLATRDPLTGAHNRLSLHSAFDYFEQNKSPNTSLCLLIIDLDYFKQINDQFGHDTGDK 251 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ G R+GGEEF S +A + LR ++ N + S Sbjct: 252 VLVETCRLFAQHVGEKNLF-RIGGEEFCITLFDHSLLQAEQIGERLRNLVAN--YSFSKQ 308 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VCFS 259 +I +T+S GI E + ++ +I AD LY AKK+GRN+V +C S Sbjct: 309 QAIQLTLSVGICEYRSGDNLNELIKLADMELYKAKKNGRNQVCICQS 355 >gi|227823386|ref|YP_002827358.1| putative response regulator/GGDEF domain transcriptional regulator [Sinorhizobium fredii NGR234] gi|227342387|gb|ACP26605.1| putative response regulator/GGDEF domain transcriptional regulator [Sinorhizobium fredii NGR234] Length = 628 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L +S ++ L+ D L+G++N AF + N LS++ D+D FK ND Sbjct: 440 LRLSAEQLKNLAETDGLTGIVNRRAFDEAFMREAARCARGNAPLSLLMIDLDRFKAYNDT 499 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GHP GD+ + +S L+ P V R GGEEF + E+ AA++A +++ Sbjct: 500 YGHPAGDQCLRLVSKCLLNSAKRPGDIVARYGGEEFVVLLPEADEKAAAVVAEKFARLLG 559 Query: 205 NSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVV 256 I + H+T S GIA EP ++ AD ALY AK GRNR++ Sbjct: 560 EENIVHAQSEFGHVTASIGIASAMGHLLQAEP-GRLLSEADAALYEAKMRGRNRIL 614 >gi|157963083|ref|YP_001503117.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157848083|gb|ABV88582.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 381 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 28/215 (13%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 + ++I E L L + ++ + YI + F++Y D L+GL + A Sbjct: 176 LWTAQFIRPETLPLAVSMTALASI--YILTVLTDSYFLAYR--------DELTGLASRRA 225 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + S K S+ DID+FK+ ND +GH VGD+V+ ++ ++ V G R GG Sbjct: 226 LFNLVLSLGRKYSVAMLDIDHFKKFNDTYGHDVGDQVLKLVASKIAGVRGGGRAF-RYGG 284 Query: 178 EEF--------AAAALG-------SSEQEAAILANDLRKIIENSQINISSG--PSIHITI 220 EEF +++ L S E+ +L ++ RK + + G ++ +TI Sbjct: 285 EEFTIIFPRKDSSSTLDYLEEVRESIEEYDIVLRDEKRKSQSKATRGKTQGKAKTVSVTI 344 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+AE + E + R+DQALY AKK GRN+V Sbjct: 345 SIGVAEHQNGETFEQTMKRSDQALYRAKKKGRNQV 379 >gi|120603366|ref|YP_967766.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio vulgaris DP4] gi|120563595|gb|ABM29339.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio vulgaris DP4] Length = 445 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 13/179 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144 +L R +L+ D L+GL F + + +++V D+D+FK++ND Sbjct: 250 DLLDLMRRNRELAERDELTGLYARRRFFERAADLHRHAARAGDAMAVVMLDVDHFKRVND 309 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD + L L F P+ GR GGEEF G+S Q R +E Sbjct: 310 TYGHVAGDLALRQLGMMLRRAFDEPVVAGRYGGEEFGLVVAGASVQGLPDRLEAFRHDVE 369 Query: 205 NSQINISSGPSI-HITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ +S G + ITISAG +A C P ++ RAD LY AK+ GRNRVV D Sbjct: 370 --RLEVSLGDRMFWITISAGCLLASACGSTP-DSLFARADALLYQAKQQGRNRVVVERD 425 >gi|299831222|gb|ADJ55751.1| hypothetical protein [Clostridium sporogenes] Length = 562 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 9/172 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L D L+ + NH F +L NE LS++F DIDYFK ND +GH G Sbjct: 184 KLESLVNKDGLTNVYNHRFFHDALSKEIIECEEKNEALSMIFIDIDYFKHYNDLYGHQKG 243 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210 DKV+ + + L V R GGEEFA +SE+EA +A +R+ E + Sbjct: 244 DKVLKTIGEILKNNTREEDIVARYGGEEFAILLPSTSEEEAINIAEKIRRKTEYTYFEGE 303 Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261 + P+ ++T+S GI+ +K +I AD ALY AK +NRV ++ I Sbjct: 304 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 355 >gi|218512873|ref|ZP_03509713.1| putative sensory box/GGDEF family protein [Rhizobium etli 8C-3] Length = 194 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 94/170 (55%), Gaps = 10/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 S N++++L+ D L+G LN S+LGS + +S++ DID+FKQ+ND GH GD Sbjct: 25 SRNQLTELAHHDPLTGALNRGGLAQHASALGS--QPISLLIMDIDHFKQLNDRHGHAAGD 82 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ + + + R GG+EF A S ++A +A +R +E + + + Sbjct: 83 EILRLFARVSRGIMRPQDLLARQGGDEFLAVLKNLSREDAMAIAERIR--LEFAAV-VMQ 139 Query: 213 GPSIHI--TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 P + + T+S G+A R +++++AD+ALY +K+ GRNRV D Sbjct: 140 RPDLAVFPTLSIGVATRISGGDFESLMHKADEALYRSKREGRNRVEASWD 189 >gi|163758980|ref|ZP_02166066.1| diguanylate cyclase [Hoeflea phototrophica DFL-43] gi|162283384|gb|EDQ33669.1| diguanylate cyclase [Hoeflea phototrophica DFL-43] Length = 260 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 11/204 (5%) Query: 58 FYGLEYILVENLSL---VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 F+G Y+ V ++ V+I + I+ + + ++ + ++ +++ Q R D L+G+L Sbjct: 40 FFGWPYLGVFAIAFFPAVLIPLLITPPIAILILNLFRVQALTIDKVDQYIRYDTLTGVLT 99 Query: 115 HSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 + LG + L + + D D+FK+IND GH VGD+ + +++ L Sbjct: 100 RAYL---LGKTRDALPSGGAFMMIDADHFKKINDTHGHDVGDEALRKMAEILRKGVCGEA 156 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 +GRLGGEEF G++E EAA AN L ++ + G I +T+S G A Sbjct: 157 LIGRLGGEEFGVFLPGATESEAAAAANRLCDLVREEG-RVIGGNDIALTVSIGCAVHRDG 215 Query: 231 EPISTIIYRADQALYVAKKSGRNR 254 + + + AD+ALY AK+SGR+R Sbjct: 216 NSLESTVKLADEALYQAKRSGRDR 239 >gi|51246553|ref|YP_066437.1| hypothetical protein DP2701 [Desulfotalea psychrophila LSv54] gi|50877590|emb|CAG37430.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 390 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 85/168 (50%), Gaps = 15/168 (8%) Query: 102 QLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +LS D L+GLLN A S Y+ +S++ FDIDYFKQ ND +GH GD Sbjct: 223 RLSLTDSLTGLLNRRAIEPLAERAMARSRRSGYS--VSLLIFDIDYFKQFNDQYGHVAGD 280 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+A + ++ + R GGEEF A + +A LAN +R+++ Sbjct: 281 RVLAAAAKEVGNSIRITDSIVRWGGEEFVVLATDTDLVQAVQLANKIRQVVAAISFEDMG 340 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G IT+S G+A+ K + AD+ALY AK GRN V +SD Sbjct: 341 G----ITVSVGLAQYNGKGDFRQWLKCADRALYQAKGRGRNCTVAYSD 384 >gi|313683550|ref|YP_004061288.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM 16994] gi|313156410|gb|ADR35088.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM 16994] Length = 854 Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 14/184 (7%) Query: 81 LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132 ++GY+S G + + I +++ ID L+G+ N F E+ LS++ Sbjct: 672 IIGYVSTGKDVTLETLMNQEIQRIATIDQLTGIYNRHKFEELFILETERSRRFLQPLSLI 731 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK +ND +GH VGD+V+ L+D + R GGEEF + + + Sbjct: 732 LIDIDHFKVVNDTYGHDVGDEVLKTLADVIGENIRKIDIFARWGGEEFLVLSPNTDLKNV 791 Query: 193 AILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 LA LR +EN+ P++ H+TIS GI+ ++ +T+ R DQ LY AK+ G Sbjct: 792 QKLAEKLRSAVENAFF-----PTVHHVTISLGISTFREEDTFTTLFKRIDQGLYYAKEHG 846 Query: 252 RNRV 255 RN++ Sbjct: 847 RNQI 850 >gi|304393867|ref|ZP_07375792.1| diguanylate cyclase [Ahrensia sp. R2A130] gi|303294066|gb|EFL88441.1| diguanylate cyclase [Ahrensia sp. R2A130] Length = 266 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 126/272 (46%), Gaps = 36/272 (13%) Query: 9 LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68 ++ WL SF + +I + +A + + ++ P + E+ Sbjct: 5 MTDWLARASRHNSFG-----VAAAITLVLILAAEVVVTQTLGYF---DPHHMEEH----G 52 Query: 69 LSLVIISITISLLLGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 ++V+ + + LL + + IL + + +++Q + D L+G ++ +AF+ + Sbjct: 53 FAVVLATGGTTALLAFPTLIILMKMTRRIDAMRRQLAQAVQTDFLTGTMSRAAFMETFER 112 Query: 125 YNEKL--------------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 K +++ D D+FK IND FGH +GD V+ + L Sbjct: 113 RQSKARERRTEGYNVNCRDALLVVDADHFKSINDRFGHSIGDAVLTMMGRVLHTSVRPGD 172 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS--QINISSGPSIHITISAGIAERC 228 VGRLGGEEF +G SEQ+A A LR I +S +NI G S+ ++I A + E Sbjct: 173 HVGRLGGEEFGVYLIGCSEQDALDAAERLRAAIADSGRHLNI-EGLSVTVSIGAVMFEPA 231 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + + +AD+ LY AK +GRN+V+ F D Sbjct: 232 CE--FARVFEKADENLYAAKDAGRNKVI-FDD 260 >gi|157376608|ref|YP_001475208.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157318982|gb|ABV38080.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 298 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 114/258 (44%), Gaps = 47/258 (18%) Query: 21 SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL 80 FSP + FS F + + + F IF+F V+ S+++ Sbjct: 62 KFSP----VQFSQLFDLVVPIIFFGGAIFVF--------------------VVCSLSLRT 97 Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVF 133 + LK+ I+ D L G+ N L +Y++ LSI Sbjct: 98 TRDIMQNYALKQENIT----------DSLMGIFNRRYLDRRLKDETERALNYSQPLSIFL 147 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DID+FKQ+NDN+GH VGD V+ ++ + + R GGEEF + + + Sbjct: 148 IDIDHFKQVNDNYGHQVGDLVLKNIAQLIKHSLRESDVLARFGGEEFVVILPRTKDSTSY 207 Query: 194 ILANDLRKIIENSQINISSGP-----SIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 LA LR ++E+ Q+ + SI +T+S G+A + +I AD+ALY A Sbjct: 208 TLAERLRHVVEDFQLTLPEESDKDSLSISVTVSIGVAGLNAQCKDCQCLIENADRALYQA 267 Query: 248 KKSGRNRVVCFSDIENNT 265 K++GRN+V+ + +T Sbjct: 268 KRNGRNQVITSKSGKTDT 285 >gi|71281176|ref|YP_270943.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71146916|gb|AAZ27389.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 334 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 9/165 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 I+Q+SRID L+ + N + SL +++KLS++ D+D+FK +NDN+GH G Sbjct: 163 EIAQISRIDGLTQVYNRRHWQDSLEQEYAKARRHDKKLSLIMLDLDHFKLLNDNYGHQGG 222 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ +S + + GR GGEEFA + A LA + +II + + Sbjct: 223 DMVLIEVSALISTLLRVEDTFGRYGGEEFAIILPETDSAGAIELAQRICRIIATTPFTYN 282 Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 I +T+S G+A+ KE +I +AD ALY AK GRN+V Sbjct: 283 DQ-VIKVTVSLGVAQLSSKESNYEELITQADSALYQAKSQGRNQV 326 >gi|309782241|ref|ZP_07676970.1| sensory box/GGDEF domain protein [Ralstonia sp. 5_7_47FAA] gi|308919012|gb|EFP64680.1| sensory box/GGDEF domain protein [Ralstonia sp. 5_7_47FAA] Length = 416 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 16/179 (8%) Query: 88 SILKELFISYNRISQLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDID 137 S+ K++ R L R D L+GL N + + + L++ DID Sbjct: 239 SVSKDITKRVERERALLRAATKDKLTGLHNRHHGEQLLAERYRTARTLQRPLTLAMCDID 298 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK+IND FGHP GD+V+A ++D L + V R GGEEF S+ +A LA Sbjct: 299 HFKRINDEFGHPTGDRVLAEVADMLRQAVRSRDAVIRWGGEEFMIVLNECSQTDAVDLA- 357 Query: 198 DLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++I++ ++N I +T+S G+A E I +I RAD ALY AK++GRNR+ Sbjct: 358 --KRILD--RVNAYEDEEIPTLTLSLGLATLAPNEAIDELIARADSALYEAKRTGRNRL 412 >gi|300716694|ref|YP_003741497.1| conserved uncharacterized protein [Erwinia billingiae Eb661] gi|299062530|emb|CAX59647.1| conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 378 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 11/184 (5%) Query: 80 LLLGYISGSILK----ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIV 132 +L G+ + + L+ +L IS R+ L+ D L+G N A L S ++ Sbjct: 194 MLQGWFNEAWLRFQENQLLIS--RLDTLAHQDVLTGTANRRALEDHLHNAVSRQASFELI 251 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 D+DYFK+ ND++GH GD +A ++ L V + V R GGEEF G++ Q Sbjct: 252 MLDVDYFKRYNDHYGHQAGDVCLAEVAAVLKTAVRTSEDLVARYGGEEFVVMLFGATPQG 311 Query: 192 AAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 A +A ++ ++ + + + S S +T+S GIA + ++ I+ AD ALY AK+ Sbjct: 312 AEQIAERIQANLQQAHLRHERSDVSDTVTVSMGIASSDGSKGVAQILAEADAALYRAKEQ 371 Query: 251 GRNR 254 GRNR Sbjct: 372 GRNR 375 >gi|89108333|ref|AP_002113.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr. W3110] gi|254161548|ref|YP_003044656.1| putative diguanylate cyclase [Escherichia coli B str. REL606] gi|85674988|dbj|BAA15155.2| predicted diguanylate cyclase [Escherichia coli str. K12 substr. W3110] gi|253973449|gb|ACT39120.1| predicted diguanylate cyclase [Escherichia coli B str. REL606] gi|253977660|gb|ACT43330.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)] Length = 347 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 168 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 221 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 222 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 281 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 282 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 341 Query: 257 CFS 259 + Sbjct: 342 LWK 344 >gi|114563939|ref|YP_751453.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114335232|gb|ABI72614.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 530 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + + L I DID+FK INDNFGH GDK Sbjct: 366 QKLNLLDPLTQLANRTALEDRMEQEYRNHVRFKTPLWIAITDIDHFKNINDNFGHSTGDK 425 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF +++ + L N +R+ I+N + Sbjct: 426 TLQVIAMALKNSLRDSEFVARYGGEEFVLLLPDVTDEHISQLLNRVREKIKNIPFKFKNQ 485 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A+ E + RAD ALY AK +GR+RVV Sbjct: 486 -RITVTLSIGAAQVMENETLEEAFERADAALYQAKNNGRDRVV 527 >gi|300922702|ref|ZP_07138795.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] gi|301325063|ref|ZP_07218603.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] gi|309796150|ref|ZP_07690561.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] gi|300420952|gb|EFK04263.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] gi|300848039|gb|EFK75799.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] gi|308120211|gb|EFO57473.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] gi|320201772|gb|EFW76348.1| Putative Heme-regulated two-component response regulator [Escherichia coli EC4100B] Length = 460 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|229492970|ref|ZP_04386765.1| diguanylate cyclase [Rhodococcus erythropolis SK121] gi|229320000|gb|EEN85826.1| diguanylate cyclase [Rhodococcus erythropolis SK121] Length = 489 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 15/204 (7%) Query: 72 VIISITISLL-LGYISGSILKELFISYNRISQLS-RIDCLSGLLNHSAFI-------SSL 122 VI SI ++L+ LG I+ + E + R L+ D L+G+L+ AF+ + Sbjct: 254 VITSIAVTLIALGPIAVACATEERRAAERELFLAVEFDHLTGVLSRGAFLGHAEAELADA 313 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + ++ D+D+FK IND GH GD V+A +++ +GRLGGEEFA Sbjct: 314 ARTQSPVGLLMLDLDHFKSINDTHGHMTGDSVLANFAERAADRLSDGDLIGRLGGEEFAV 373 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRAD 241 S A D+ + + +Q+ S+ + T+S G+A H P +ST++ AD Sbjct: 374 LLPDCSFTRAI----DVAEAVRGAQVEYSAESDVTSTVSVGVAWVDHATPALSTLMSVAD 429 Query: 242 QALYVAKKSGRNRVVCFSDIENNT 265 +ALY AK++GRN +V + N+T Sbjct: 430 EALYDAKRAGRN-LVKVHRVGNDT 452 >gi|152994229|ref|YP_001339064.1| PAS/PAC sensor-containing diguanylate cyclase [Marinomonas sp. MWYL1] gi|150835153|gb|ABR69129.1| diguanylate cyclase with PAS/PAC sensor [Marinomonas sp. MWYL1] Length = 469 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 91/177 (51%), Gaps = 8/177 (4%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYF 139 SI E F + + + + D L+ L N F L EK L+I+ D+D+F Sbjct: 282 ASIAIESFRAQEALQKRAYFDHLTELANRGYFFQQCETLLNLSREKNFPLAILMMDVDHF 341 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K++ND FGH GD V+ L+ + + + R+GGEEFA + + EA +A L Sbjct: 342 KKVNDEFGHKTGDLVLQMLAQMSLSILRRDDLIARIGGEEFAILLPFTEKDEALRIAEQL 401 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 R+ IE+S + + T+S G+A R + + I+ +AD+ALY AK +GRN V Sbjct: 402 RESIESSMVLSLDHQEVVFTVSLGVACRQDGDCTVDDILNKADKALYQAKAAGRNCV 458 >gi|163849321|ref|YP_001637365.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222527315|ref|YP_002571786.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] gi|163670610|gb|ABY36976.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222451194|gb|ACM55460.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] Length = 722 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 80/158 (50%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNH A L + LSI DID+FK++ND++GH +GD+V+ + Sbjct: 417 DSLTGLLNHQAVEEELSHEFARAERLQQPLSIAIIDIDHFKRVNDSYGHLIGDQVLRSFA 476 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L +GR GGEEF A +S EA L + +R + +G +T Sbjct: 477 RLLQQRLRKSDLIGRHGGEEFLVALPNTSLVEARTLIDTIRTSFAALRHYGPAG-EFTVT 535 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 SAGIA H ++ AD ALY AK +GRNR+V Sbjct: 536 FSAGIAGYPHHRSQLGVMQAADAALYQAKHAGRNRIVV 573 >gi|326794215|ref|YP_004312035.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326544979|gb|ADZ90199.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 384 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 112/207 (54%), Gaps = 19/207 (9%) Query: 61 LEYILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 LE L + L+L++ + IS++L + +L F ++ +++D L+GL N + Sbjct: 167 LEKRLTKGLTLLVWGLFISIMLVIAVLVYVLTRSFKQQVLLAAQNQLDELTGLYNRRYLM 226 Query: 120 SSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 GS + + + D+D FK +ND +GHPVGD+V+ +++ L + V RL Sbjct: 227 KEAGSALIESDSSIGLAIIDLDMFKVVNDKYGHPVGDRVLKHVAEILSSTMQDGI-VARL 285 Query: 176 GGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 GGEEF +L S +Q ++R IIE + I + + +TIS G C+++P Sbjct: 286 GGEEFCLFFTSLCSEKQIEK--CEEIRSIIERAVIEVDD-LKLKVTISIGF---CYRKPN 339 Query: 234 STIIY-----RADQALYVAKKSGRNRV 255 +++ +AD+ALY+AK++GRN+V Sbjct: 340 ERVVFSQLYNQADRALYLAKQNGRNQV 366 >gi|157376703|ref|YP_001475303.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157319077|gb|ABV38175.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 610 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 96/199 (48%), Gaps = 18/199 (9%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSY 125 ++L+I IT+ GY S +++ R+ QL+ D L+G+ N F S Y Sbjct: 392 IALLIAIITLLSFWGYKS-------WMTQKRLKQLAEFDALTGVFNRGHFTQLAQSALQY 444 Query: 126 NEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 E LS + FD+D FK IND++GH GD V+ ++D V + RLGGEEF Sbjct: 445 CENSDIYLSCILFDLDKFKTINDSYGHACGDWVLKRVADVCKVQGRSNDIFARLGGEEFC 504 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYR 239 G A LA RK I +Q++ S SG IT S G+ + + + I Sbjct: 505 ILLPGCDLLTATRLAETCRKAI--AQLDTSDSGAEFIITASFGVTDAKLSGYDLEKITAD 562 Query: 240 ADQALYVAKKSGRNRVVCF 258 AD A+Y +K GRNR F Sbjct: 563 ADMAMYQSKHDGRNRTTVF 581 >gi|226940043|ref|YP_002795116.1| hypothetical protein LHK_01115 [Laribacter hongkongensis HLHK9] gi|226714969|gb|ACO74107.1| GGDEF domain protein [Laribacter hongkongensis HLHK9] Length = 585 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 11/180 (6%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDI 136 Y + ++ EL S + +LS D L+GL N + IS + ++ S++ D+ Sbjct: 408 YFNNVLINELVSSNRELEKLSSTDRLTGLANRLRLDEEVARQISLAQRHAQEFSLILLDL 467 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK +ND GH VGD+V+ ++ L GR GGEEF +S + A +A Sbjct: 468 DHFKLVNDQHGHQVGDRVLIEIAALLRQTLRNSDTAGRWGGEEFLIVLPQTSVESARKVA 527 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + LR+ I S GP T S GIA + T+ R D A+Y +K+ GRNRV Sbjct: 528 DKLRRTIAGHNFG-SVGPQ---TASFGIAVWHTGDTAKTLFVRVDHAMYQSKRDGRNRVT 583 >gi|193064262|ref|ZP_03045345.1| diguanylate cyclase [Escherichia coli E22] gi|194426074|ref|ZP_03058630.1| diguanylate cyclase [Escherichia coli B171] gi|209918771|ref|YP_002292855.1| hypothetical protein ECSE_1580 [Escherichia coli SE11] gi|218554022|ref|YP_002386935.1| putative diguanylate cyclase [Escherichia coli IAI1] gi|218695027|ref|YP_002402694.1| putative diguanylate cyclase YddV [Escherichia coli 55989] gi|293445892|ref|ZP_06662314.1| diguanylate cyclase yddV [Escherichia coli B088] gi|300824488|ref|ZP_07104600.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7] gi|331667885|ref|ZP_08368742.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA271] gi|331677370|ref|ZP_08378045.1| diguanylate cyclase YddV (DGC) [Escherichia coli H591] gi|192929110|gb|EDV82721.1| diguanylate cyclase [Escherichia coli E22] gi|194416129|gb|EDX32395.1| diguanylate cyclase [Escherichia coli B171] gi|209912030|dbj|BAG77104.1| conserved hypothetical protein [Escherichia coli SE11] gi|218351759|emb|CAU97475.1| putative diguanylate cyclase YddV [Escherichia coli 55989] gi|218360790|emb|CAQ98357.1| putative diguanylate cyclase YddV [Escherichia coli IAI1] gi|291322722|gb|EFE62150.1| diguanylate cyclase yddV [Escherichia coli B088] gi|300523043|gb|EFK44112.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7] gi|323947806|gb|EGB43803.1| GGDEF domain-containing protein [Escherichia coli H120] gi|324021084|gb|EGB90303.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3] gi|331064849|gb|EGI36751.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA271] gi|331073830|gb|EGI45150.1| diguanylate cyclase YddV (DGC) [Escherichia coli H591] Length = 460 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|170736921|ref|YP_001778181.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia MC0-3] gi|169819109|gb|ACA93691.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia MC0-3] Length = 313 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 13/182 (7%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +E + ++ + + D L+G+ N F + LG Y LS++ FD+D+FK Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFARWQRYGGDLSVLLFDLDHFKT 194 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH GD V+ + ++ + GR GGEEFA ++ EA +A+ +R+ Sbjct: 195 INDRFGHAAGDAVLRETARRVASIVRAQDTFGRFGGEEFALLLPCTNLDEAMRVADKVRE 254 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258 I + ++ + G S+ +T S G C K T ++ AD ALY AK+ GR+R + + Sbjct: 255 AIGSMPVD-AEGVSVPVTASVGGT--CAKPGALTCDVLVNEADAALYRAKRLGRDRSIAY 311 Query: 259 SD 260 +D Sbjct: 312 AD 313 >gi|309701753|emb|CBJ01064.1| putative diguanylate cyclase [Escherichia coli ETEC H10407] Length = 347 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 168 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 221 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 222 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 281 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 282 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 341 Query: 257 CFS 259 + Sbjct: 342 LWK 344 >gi|254459366|ref|ZP_05072787.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207083979|gb|EDZ61270.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 666 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 4/131 (3%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 Y++ SI+ DID+FK++ND +GH VGD+V+ +S + + + +GR GGEEF + Sbjct: 538 YDKIYSIILIDIDFFKKVNDTYGHQVGDEVLQKVSFIMKELIRSTDILGRWGGEEFMIIS 597 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + A L ++R IEN+ + + +TISAGIA+ +II +AD+AL Sbjct: 598 PNTDLNGAYTLTQNIRSNIENTIFDSVN----KVTISAGIAQINSNLDEKSIITKADEAL 653 Query: 245 YVAKKSGRNRV 255 Y AK +GRNRV Sbjct: 654 YRAKDNGRNRV 664 >gi|126666596|ref|ZP_01737574.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter sp. ELB17] gi|126628984|gb|EAZ99603.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter sp. ELB17] Length = 460 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N ++ L Y ++I DID+FK+IND+FGH GD+V+ L+ Sbjct: 301 DMLTQLPNRDSWQDRLQFEVDRWQRYKGDITIAVVDIDFFKRINDSFGHKAGDRVLQLLA 360 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L + F+ R+GGEEF ++ +A + + LR + + S+ P + IT Sbjct: 361 RELKKGLRSTDFIARIGGEEFVVLLPETTGAQAKKVMDGLRDNVAKLPFHFSNQP-VTIT 419 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SAG+A + + T+ RAD+ LY AK +GRN+V+ Sbjct: 420 FSAGLASIRNGDNEDTLFERADRTLYKAKNAGRNQVM 456 >gi|194436632|ref|ZP_03068733.1| diguanylate cyclase [Escherichia coli 101-1] gi|253773539|ref|YP_003036370.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260855209|ref|YP_003229100.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368] gi|260867930|ref|YP_003234332.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128] gi|300929571|ref|ZP_07145035.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] gi|166227580|sp|Q320T0|YDDV_SHIBS RecName: Full=Diguanylate cyclase yddV; Short=DGC gi|194424664|gb|EDX40650.1| diguanylate cyclase [Escherichia coli 101-1] gi|253324583|gb|ACT29185.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|257753858|dbj|BAI25360.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368] gi|257764286|dbj|BAI35781.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128] gi|300462486|gb|EFK25979.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] gi|313848636|emb|CAQ31978.2| diguanylate cyclase, subunit of DosC-DosP complex [Escherichia coli BL21(DE3)] gi|323962340|gb|EGB57928.1| GGDEF domain-containing protein [Escherichia coli H489] gi|323973669|gb|EGB68845.1| GGDEF domain-containing protein [Escherichia coli TA007] gi|324119398|gb|EGC13284.1| GGDEF domain-containing protein [Escherichia coli E1167] Length = 460 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] gi|151282177|gb|ABR90587.1| Hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFKQIND 144 E I+ R+ + D L+G+ N + +G LS ++ D+D+FK++ND Sbjct: 172 ENVINNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYALSGMYIDLDHFKKVND 231 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 NFGH GD+V+ +++++ +GR GGEEF + + A ++A +R + Sbjct: 232 NFGHQGGDEVLCEVANRIKAELRLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVS 291 Query: 205 NSQINISSGPSIHITISAGI-----AERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258 I +SSG + T+S G+ A+R ++ ++ +AD ALY AKK GRN+V+ Sbjct: 292 ERPIVLSSGEELRATVSIGVASLNTADRQDSAAVAQQLLAKADLALYQAKKEGRNKVISA 351 Query: 259 S 259 S Sbjct: 352 S 352 >gi|148256093|ref|YP_001240678.1| response regulator PleD [Bradyrhizobium sp. BTAi1] gi|146408266|gb|ABQ36772.1| response regulator receiver modulated diguanylate cyclase [Bradyrhizobium sp. BTAi1] Length = 466 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + S + L+++ DIDYFK IND +GH GD V+ + Sbjct: 289 DALTGLHNRRYMETHLATLADQAASRGKPLALMMLDIDYFKAINDTYGHDAGDDVLREFA 348 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 ++ R GGEEF + A ++A LR+ + N + G I + Sbjct: 349 MRVRKSIRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRSVANEPFAVHKGEKRIEV 408 Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 T S GI+ K EPI+ ++ RAD ALY AK GRNR V + + Sbjct: 409 TTSIGISTLEQKGEPIADVMKRADTALYRAKNDGRNRAVAIAPV 452 >gi|134093755|ref|YP_001098830.1| putative signaling protein [Herminiimonas arsenicoxydans] gi|133737658|emb|CAL60703.1| conserved hypothetical protein; putative GGDEF domain [Herminiimonas arsenicoxydans] Length = 258 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 79/154 (51%), Gaps = 4/154 (2%) Query: 104 SRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +R D L+G+LN A Y + LS++ DID+FK+IND FGHP GD V+ L + Sbjct: 81 ARHDNLTGVLNRGAVFDQAEHYLKSNPLSLIVLDIDFFKRINDEFGHPTGDAVLRELVKK 140 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L +GR+GGEEF S +A +A ++R I + + P H+T S Sbjct: 141 LKSSLNGVGEIGRVGGEEFTVLLPNISLDDAIEIAENVRLAI--AAETFTCFPRPHVTAS 198 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 GI+ RAD ALY AK +GRNRV Sbjct: 199 FGISWSDTNCDFENAYGRADAALYKAKHNGRNRV 232 >gi|78485406|ref|YP_391331.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78363692|gb|ABB41657.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2] Length = 566 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 87/160 (54%), Gaps = 10/160 (6%) Query: 107 DCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ + N AF S Y KL + DID+FK+IND+FGH VGD V+ + Sbjct: 405 DALTNVANRRAFNHFCEHLAFDSQNFYQGKLVALMLDIDFFKEINDSFGHSVGDIVLQKV 464 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L + + R+GGEEF L + ++A +A +R IE + + +I I Sbjct: 465 ASLLRNNTKSADKIFRMGGEEFLVLLLDTELEDAQKVAERIRAAIEEMETH-KENKTISI 523 Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257 T+S G+A+ ++ + + I AD+ALY AK+SGRN+VV Sbjct: 524 TVSIGMADFLPEDVSLLSTIQLADKALYEAKRSGRNKVVL 563 >gi|46578832|ref|YP_009640.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603561|ref|YP_967961.1| diguanylate cyclase [Desulfovibrio vulgaris DP4] gi|46448244|gb|AAS94899.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563790|gb|ABM29534.1| diguanylate cyclase [Desulfovibrio vulgaris DP4] gi|311232695|gb|ADP85549.1| diguanylate cyclase [Desulfovibrio vulgaris RCH1] Length = 372 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 10/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 + L ++++ +R D L+GL N + ++ LS++ DID+FK IN Sbjct: 183 RRLLALTHQLAFCARSDPLTGLANRRSLCERFEQERQRSLRNNTPLSLILCDIDHFKTIN 242 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD V+ L+D L V R GGEEF + E+ A LA LR + Sbjct: 243 DTHGHECGDYVLRKLADMLRTNMRAQDTVCRWGGEEFLLLLPDTDEKGATRLAEKLRTLT 302 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRVV 256 E+ + P I +T+ G+ +C +E + I +AD+ LY+AK+ GRNRVV Sbjct: 303 ESYPFSYHGIP-IRVTLCFGV-HQCSREGHTDYHIRKADRKLYMAKEQGRNRVV 354 >gi|218886632|ref|YP_002435953.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757586|gb|ACL08485.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 381 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 13/243 (5%) Query: 24 PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83 P M+ F + I + + + + ++ PF +Y + ++ + + G Sbjct: 120 PPVVMLTFGLSIGILLMGALLLGVGAILFLPGDPFLYADYSQAFRIRYMLALLCCGIFAG 179 Query: 84 ---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIV 132 Y + L + ++++ +R D L+GL N A L Y + LSI Sbjct: 180 LAEYTRRHTQRLLILLTQQLAESARTDELTGLANRRALCERL-EYEQVRARRTGRPLSIA 238 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK +ND +GH GD V+ ++ L + R GGEEF + E A Sbjct: 239 ICDIDHFKSVNDCYGHQCGDLVLQSVAGLLHDNLRHQDTICRWGGEEFLLLLPETDEAGA 298 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A LA LR ++E + + P + +T+S G+ + I I +ADQ LY+AK+ GR Sbjct: 299 ARLAEKLRSLVEAMEYSYHGIP-VSVTLSFGVHTCGPEGDIDYHIRKADQKLYLAKEQGR 357 Query: 253 NRV 255 NRV Sbjct: 358 NRV 360 >gi|218700119|ref|YP_002407748.1| putative diguanylate cyclase YddV [Escherichia coli IAI39] gi|293409835|ref|ZP_06653411.1| conserved hypothetical protein [Escherichia coli B354] gi|218370105|emb|CAR17886.1| putative diguanylate cyclase YddV [Escherichia coli IAI39] gi|284921376|emb|CBG34444.1| putative signal transduction protein [Escherichia coli 042] gi|291470303|gb|EFF12787.1| conserved hypothetical protein [Escherichia coli B354] Length = 460 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|239617314|ref|YP_002940636.1| diguanylate cyclase with PAS/PAC sensor [Kosmotoga olearia TBF 19.5.1] gi|239506145|gb|ACR79632.1| diguanylate cyclase with PAS/PAC sensor [Kosmotoga olearia TBF 19.5.1] Length = 303 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ L N F++ + + ++F DID+FK ND +GH GD Sbjct: 139 LEKLAMFDELTKLPNRRYVEERLEDFMNDFMRHKLRFGVIFMDIDHFKSFNDTYGHVAGD 198 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ +++ L+ VGR GGEEF A + + +A R ++E+S + + Sbjct: 199 KVLKIVANTLLGASRVSDVVGRWGGEEFVALIKNVNMKTIETIAERYRLLVESSSFEL-N 257 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G S+ +TIS G + +II RAD+ +Y++K+ GRNR+ Sbjct: 258 GESLSVTISIGATLAKQGDTKESIIKRADELMYISKQRGRNRLT 301 >gi|169830872|ref|YP_001716854.1| diguanylate cyclase [Candidatus Desulforudis audaxviator MP104C] gi|169637716|gb|ACA59222.1| diguanylate cyclase [Candidatus Desulforudis audaxviator MP104C] Length = 471 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 12/164 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +R+ + + D L+G N A + Y LS++F DID FK ND FGH Sbjct: 307 HRLEREAETDFLTGFFNKRALRNLLIVELERTTRYGTPLSVIFLDIDDFKTYNDTFGHVA 366 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ + GR GGEEF G+ E+ A +A ++K IE Sbjct: 367 GDVVLQKTAEIIRNSIRLVDIAGRYGGEEFVIILPGTKEEGAVAVAERIQKSIEAFPF-- 424 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 P +T S GIA + + + +++ RADQA Y AK+ G+NR Sbjct: 425 ---PRRQVTTSLGIALAKNNDSVDSLLERADQACYQAKRQGKNR 465 >gi|83745561|ref|ZP_00942619.1| Hypothetical Protein RRSL_04620 [Ralstonia solanacearum UW551] gi|207738908|ref|YP_002257301.1| hypothetical protein ggdef [Ralstonia solanacearum IPO1609] gi|83727638|gb|EAP74758.1| Hypothetical Protein RRSL_04620 [Ralstonia solanacearum UW551] gi|206592279|emb|CAQ59185.1| hypothetical protein ggdef [Ralstonia solanacearum IPO1609] Length = 467 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 8/176 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 L+EL +++++ L+ D L+GL N FI + + S++ D+D FK I Sbjct: 291 LRELQAAHHKLEHLAATDPLTGLANRREFIGRVEAEIANANHAGAPFSVLALDLDRFKAI 350 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD V+ + + + V R+GGEEF A +A +R Sbjct: 351 NDTYGHQAGDHVLQRFAKKCLEAIRPHDGVARVGGEEFMVLLPKIPLSAAHDIAERIRTA 410 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I S + G ++ +T+S G++E I I+ AD+ LY AK GRNRV+ Sbjct: 411 IAASPFELGPGHAVPLTVSIGVSEFGRDGSDIDAILRSADERLYRAKHEGRNRVIA 466 >gi|75762223|ref|ZP_00742115.1| GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490290|gb|EAO53614.1| GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 352 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 18/204 (8%) Query: 65 LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118 L++++++V + + S++ GYI+ +L+ ELF + Q + +D L+GL N F Sbjct: 150 LIKDINIVGLYLISSIITGYITFISANYVLQSNELF---QTMKQYATVDALTGLGNVRQF 206 Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 IS+ N+ L ++ DID+FK +ND +GHP GD+V + L P Sbjct: 207 DLEMNRHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVXKQVGCILRETSQFPDL 266 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 R GGEEFA + +R +E+ + G I IT+S G++E ++ Sbjct: 267 AFRKGGEEFALLIPNKGLAYGIRMGEQIRIAVESHPFQLLDGTKIKITVSVGVSE--YEG 324 Query: 232 PISTIIYRADQALYVAKKSGRNRV 255 I AD ALY +K++GRN+V Sbjct: 325 SSEQFIQAADDALYYSKRNGRNKV 348 >gi|332091555|gb|EGI96638.1| diguanylate cyclase domain protein [Shigella boydii 5216-82] Length = 460 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|296102838|ref|YP_003612984.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057297|gb|ADF62035.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 490 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F I++ + +SI+ D+DYFK+ NDN+GHP GD+ + L Sbjct: 326 DALTGLFNRRTFDEKILSEIAACADNDTPISILIVDVDYFKKYNDNYGHPEGDRCLTLLG 385 Query: 160 DQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L + V R GGEEFA + QEA LA + + + + I + P + Sbjct: 386 NSLRESLTRNNQLVARYGGEEFALILPDADIQEAIRLAQTIIRNVFSLHIEHAFSPFGRV 445 Query: 219 TISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNR 254 T+S G++ + II ADQALY AK++GRNR Sbjct: 446 TVSVGVSTARAVDIAGSQQNIIIAADQALYQAKRAGRNR 484 >gi|149923203|ref|ZP_01911615.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1] gi|149815919|gb|EDM75436.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1] Length = 306 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 13/168 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148 SY R L+ +D L+GL N + + S ++++ DID+FK +ND+ GH Sbjct: 141 SYER---LAHVDELTGLPNRRRYDERMHSELALARRSGRPVTLLLVDIDHFKDVNDSLGH 197 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+V+ F+ + L + R GGEEFA A ++ ++A++L +R E Sbjct: 198 QVGDEVLGFMGELLDASTRRGDWPFRFGGEEFAIIARNTTAKQASVLGERIRGAFEARSG 257 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++G T S GIA + + RAD LY AK++GRNRVV Sbjct: 258 ETAAGLR---TCSVGIASFEPADTPEALFARADARLYAAKQAGRNRVV 302 >gi|10957453|ref|NP_051575.1| GGDEF family protein [Deinococcus radiodurans R1] gi|6460882|gb|AAF12586.1|AE001826_55 GGDEF family protein [Deinococcus radiodurans R1] Length = 219 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 21/170 (12%) Query: 103 LSRIDCLSGLLNHSAFISSL------GSYN-----EKLSIVFFDIDYFKQINDNFGHPVG 151 L+R D L+G+LN L G ++ E++++ F DID+FK ND F H G Sbjct: 45 LARQDALTGVLNRRGLDEGLSALQQSGEWSATQQAEQIAVGFIDIDHFKSFNDEFSHATG 104 Query: 152 DKVIAFLSD--QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---S 206 D+V+ L+ Q + + TP +GR GGEEF A + E+ A L D R++I + S Sbjct: 105 DEVLRCLAALLQQIALSPTPSLLGRYGGEEFVLVASVNEERTAWQLFEDCRELIRDHDWS 164 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I G ++ I + G+ + ++ +AD+ LY AK+ GRNR + Sbjct: 165 GIAAQRGVTVSIGFATGVP-----ADLPQLLLKADEHLYQAKREGRNRTL 209 >gi|332561172|ref|ZP_08415490.1| diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides WS8N] gi|332274970|gb|EGJ20286.1| diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides WS8N] Length = 326 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 9/163 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q++ D L+G + +++++ + +IV FD+D+FK IND GH VGD Sbjct: 161 LRQIALSDALTGAMTRRGWLAAVEKEMARGARQGTQAAIVLFDVDHFKAINDTHGHAVGD 220 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+ + ++ G +GR+GGEEFA G+ EA LA LR+ ++ I + + Sbjct: 221 AVLQALTQRCLLHLGPADALGRIGGEEFAVLVPGAGLPEAMELAERLRRSFSDAPIEV-A 279 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254 G ++ +T S G+ + + AD+ LY AK +GRNR Sbjct: 280 GQALRVTASFGVQGLDGDTGNAGSWLAAADRRLYEAKAAGRNR 322 >gi|322433804|ref|YP_004216016.1| diguanylate cyclase with beta propeller sensor [Acidobacterium sp. MP5ACTX9] gi|321161531|gb|ADW67236.1| diguanylate cyclase with beta propeller sensor [Acidobacterium sp. MP5ACTX9] Length = 1095 Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 8/172 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFIS-SLGSY------NEKLSIVFFDIDYFKQIN 143 ++L ++ ++ QL+ D L+ L N F+ + Y S++ DID+FK +N Sbjct: 912 RQLELANLKLGQLAIRDSLTNLYNRRHFLDLAEAEYLRSRRSQRTFSLLLMDIDHFKLVN 971 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD VI ++D++ R GGEE+ +S +A LA +R+ + Sbjct: 972 DTWGHFTGDAVIQMVADRISSSLRATDTAARFGGEEYIVLLPETSSPQAIQLAERIREAV 1031 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S + ++ I IT+S G AE ++ ++ RAD+ALY AK +GRNR+ Sbjct: 1032 AASPLQ-TTAQDIAITLSIGCAEFDPNATLTQLLERADKALYAAKNAGRNRI 1082 >gi|256829679|ref|YP_003158407.1| PAS/PAC sensor-containing diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gi|256578855|gb|ACU89991.1| diguanylate cyclase with PAS/PAC sensor [Desulfomicrobium baculatum DSM 4028] Length = 405 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 9/163 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFIS-----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ S+ID L+G+ N + F+ L +E S + FDID+FK+IND +GH +GD+V Sbjct: 243 LTKKSQIDGLTGIFNRNTFVQFAQEMLLSPAHEFASFMLFDIDHFKEINDTYGHDIGDEV 302 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L + + GR GGEEF ++ +A ++A L + I Q + G Sbjct: 303 LIELVRLIQQLLRREEIFGRFGGEEF-GILFPVAQDQAKVIAQRLLEAI--RQHRFTRG- 358 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ +T+S G+ + T+ AD+ LY+AK SGR+R+ C Sbjct: 359 NLAVTVSMGLVDNSFSNVFDTMYKEADRLLYIAKNSGRDRLEC 401 >gi|225631178|ref|ZP_03787881.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591126|gb|EEH12305.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 460 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++S D L+ N F + L + + +LS++ DIDYFK +ND+FGH GD+ Sbjct: 291 AEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRRLSLMILDIDYFKIVNDSFGHSAGDE 350 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ + ++ + R GGEEF ++ +A +A +RKII ++ Sbjct: 351 LLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTNVSDAYTIAERIRKIIAKEPFVLADK 410 Query: 214 PSIH-ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 + H +T+S GIAE + I I RAD+ LY AK SGRNRVV Sbjct: 411 NTTHNVTVSIGIAEMQGSDFDDIKKFIVRADRYLYKAKNSGRNRVVT 457 >gi|297582891|ref|YP_003698671.1| 7TM domain sensor diguanylate cyclase [Bacillus selenitireducens MLS10] gi|297141348|gb|ADH98105.1| 7TM domain sensor diguanylate cyclase [Bacillus selenitireducens MLS10] Length = 610 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 ++ LS D L+ + N F + + ++LS++F DIDYFK+ ND +GH Sbjct: 437 KKLKDLSVRDPLTNVYNRGGFDQQMKAKWTEALQERKELSLLFVDIDYFKRYNDEYGHQA 496 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + ++ L G V R GGEEF G+SE++AA A L K I + QI Sbjct: 497 GDQTLISVAHTLQEALGEKAIVSRYGGEEFVLILPGASEEQAASAAATLLKAIRDQQIPH 556 Query: 211 S-SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDI 261 S S + ++T+S G R E I +ADQALY AK++GR+R + D+ Sbjct: 557 SQSQVAPYVTVSIGGISRIPNETDKPDAFIKQADQALYAAKEAGRDRYILAQDV 610 >gi|170726479|ref|YP_001760505.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169811826|gb|ACA86410.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 341 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G+LN AF S SL + L ++ DID+FK NDN+GH +GD+V+ ++ +L Sbjct: 182 DALTGVLNRRAFDSDLKGSLSQSPDGLCLILIDIDHFKAFNDNYGHQLGDQVLKAVAKRL 241 Query: 163 --VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HI 218 GT ++ R GGEEFA S ++A LA +R+ +E + ++ +I Sbjct: 242 GESCREGTKLY--RYGGEEFAVITANSQLRKARHLAEAMRRALEKVSLKDRRKDAMINNI 299 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T S G+A+ + +I ++D+ LY AK+ GRNRV+ Sbjct: 300 TASFGVAQWDPSLSATQLIEQSDKLLYEAKRLGRNRVM 337 >gi|26986874|ref|NP_742299.1| GGDEF domain-containing protein [Pseudomonas putida KT2440] gi|24981476|gb|AAN65763.1|AE016202_6 GGDEF domain protein [Pseudomonas putida KT2440] Length = 645 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + +D L+GL N +A+ + + E L++ D+D+FK+INDN+GH GDKV Sbjct: 483 QKALLDPLTGLPNRAAWSERVEREMLDWQENGGHLAMAILDLDHFKRINDNYGHLAGDKV 542 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++DQL F+ R GGEEF ++ AA +A LR +E + G Sbjct: 543 LKIVADQLRKRLRGRDFIARFGGEEFVMLLPQTTPAVAAQVAEVLRATVEACPFHF-KGE 601 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT S G+ E ++ RAD ALY AK+ GRNRV Sbjct: 602 RVVITTSIGLGAFRSGERSDQVLKRADAALYRAKELGRNRV 642 >gi|54293727|ref|YP_126142.1| hypothetical protein lpl0780 [Legionella pneumophila str. Lens] gi|53753559|emb|CAH15014.1| hypothetical protein lpl0780 [Legionella pneumophila str. Lens] Length = 516 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N ++ + S + LS+ DID+FK INDNFGH GDKV+ ++ Sbjct: 359 DSLTGLPNRESYEEHILDSFQRWKRSSSVLSLAVCDIDHFKCINDNFGHLAGDKVLKKVA 418 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 T F+ R+GGEEF +S +EA + LRK++E+ + + +T Sbjct: 419 MIFKSSIRTVDFIARIGGEEFVFIFEQTSSKEAFGVLEKLRKLVEDC-LFYYRDKKVDVT 477 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+ ++ I ++ RAD A+Y AKK+G+NRV Sbjct: 478 VSFGLTTVTEEDDIESLFMRADNAMYKAKKAGKNRV 513 >gi|331682958|ref|ZP_08383566.1| diguanylate cyclase YddV (DGC) [Escherichia coli H299] gi|331079779|gb|EGI50969.1| diguanylate cyclase YddV (DGC) [Escherichia coli H299] Length = 460 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|300939080|ref|ZP_07153771.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] gi|300455982|gb|EFK19475.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] Length = 460 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|317154386|ref|YP_004122434.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316944637|gb|ADU63688.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 840 Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 20/217 (9%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L P G+ YI + + S ++ ++G + E ++ + +L+ D L+GL + Sbjct: 623 LLPEGGVRYIRAAARAHMDNSSKVASIIGI--NQDITEQRLAEQELVRLATKDSLTGLFS 680 Query: 115 HSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 F+ LG+ Y E LS+V FD D FK +ND GH VGD V+ + Sbjct: 681 RGHFME-LGTRAVEHARRYGEPLSVVMFDADRFKAVNDTHGHDVGDMVLKAIGRAAARTL 739 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225 +GR+GGEEFAA ++ ++A ++A +R I S+I + + + +T+S G+ Sbjct: 740 RDVDVLGRIGGEEFAAVLPQTTREQALLVAERVRAEIAASRIEVDADTVLSVTVSLGVCV 799 Query: 226 --ERCHKEP------ISTIIYRADQALYVAKKSGRNR 254 +P + ++ AD ALY AK++GRNR Sbjct: 800 MDTAPDTDPGTATASLDKLLKGADTALYKAKQNGRNR 836 >gi|269929071|ref|YP_003321392.1| serine/threonine protein kinase [Sphaerobacter thermophilus DSM 20745] gi|269788428|gb|ACZ40570.1| serine/threonine protein kinase [Sphaerobacter thermophilus DSM 20745] Length = 1765 Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 9/168 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + + +L+ D L+G N + S +N L+ + DID FK++ND GH Sbjct: 1597 FAEVQRLAVTDDLTGTYNRRHLLTTAERELSRAQRFNRPLAAIILDIDEFKRVNDAHGHA 1656 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ ++D+L +GR GGEEF + A +A LR I I Sbjct: 1657 VGDEVLRAVADRLRSGLREVDVLGRYGGEEFVIILPETDLISAYQIAERLRNSIAAEPIA 1716 Query: 210 ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 S+GP + +TIS G+A P ++++ R D LY AK+ GRNRVV Sbjct: 1717 TSTGP-VSVTISLGVAAADPTTPDFASLLSRIDDLLYTAKRRGRNRVV 1763 >gi|157273340|gb|ABV27239.1| two-component response regulator protein [Candidatus Chloracidobacterium thermophilum] Length = 750 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 17/176 (9%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145 + +Y+ + D L+GL NH+ F+ L G LS++ D+D FK ND Sbjct: 549 MLRAYHSARHRAITDGLTGLFNHAYFLEKLTREAELAGRSGRPLSVIMLDVDRFKHFNDT 608 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIE 204 GH G++++ L+ + F + R GGEEF + + +AA+LA L R++ E Sbjct: 609 NGHETGNELLKDLARLMERCFRRSDLLARYGGEEFVVLLPNTPKSQAAVLAERLRRRVAE 668 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRV 255 + S P +T+S G+A P T ++ AD+ALY AK++GRNRV Sbjct: 669 YPFVGRESQPGGCLTVSLGVA----AMPTDTSDPKQLLELADRALYRAKQNGRNRV 720 >gi|325917514|ref|ZP_08179719.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325536272|gb|EGD08063.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 992 Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 8/174 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +L L I + + + D L+GL N F IS L + DID+FK+ Sbjct: 799 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSGRPLVLAILDIDHFKR 858 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND + H +GD V+ + + L T RLGGEEFA +S +A +L +R Sbjct: 859 INDRYSHAIGDAVLHDVGELLTAAARTSDLPARLGGEEFALLLADTSLSDAQVLCERIRM 918 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +++ + + +T SAG+AE + S+++ RAD ALY AK +GR+R+ Sbjct: 919 LF-HARADWGDVEGLQVTFSAGLAELRDDDNGSSLMQRADHALYQAKSAGRDRI 971 >gi|191165101|ref|ZP_03026945.1| diguanylate cyclase [Escherichia coli B7A] gi|190904873|gb|EDV64578.1| diguanylate cyclase [Escherichia coli B7A] Length = 460 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|94310036|ref|YP_583246.1| diguanylate cyclase [Cupriavidus metallidurans CH34] gi|93353888|gb|ABF07977.1| Putative diguanylate cyclase (GGDEF domain) [Cupriavidus metallidurans CH34] Length = 653 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 15/179 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 +LKEL + +D L+GL N F + LSI+ D+D FK Sbjct: 471 QMLKELRTQAD-------LDALTGLANRRYFENAAQKAVMHARKQGSALSILALDLDLFK 523 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ++ND +GH GD+V+ ++ Q + R+GGEEF A ++ +A ++A +R Sbjct: 524 RVNDTYGHAAGDRVLQVVARQFEGALRSTDLGARIGGEEFTAILFDTALGQAQVIAERIR 583 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I+N+ I + SG +I T+S GIA R + ++ RAD ALY AK +GRNRV + Sbjct: 584 AAIQNTPIILESGEAITQTVSIGIAAYREDESDLAAAQERADAALYSAKAAGRNRVHVY 642 >gi|153837554|ref|ZP_01990221.1| ggdef domain protein [Vibrio parahaemolyticus AQ3810] gi|308094843|ref|ZP_05892972.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|308095339|ref|ZP_05905068.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus Peru-466] gi|308125425|ref|ZP_05775214.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|308126139|ref|ZP_05908168.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|149749150|gb|EDM59955.1| ggdef domain protein [Vibrio parahaemolyticus AQ3810] gi|308086834|gb|EFO36529.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus Peru-466] gi|308091770|gb|EFO41465.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|308110380|gb|EFO47920.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|308115592|gb|EFO53132.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] Length = 402 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 10/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+ LS +D L+GL N A ++ N +SIV D+D FK IND +GH GD Sbjct: 222 INDLSHLDALTGLYNRRAMEVIVPNLVNQAREKNTPISIVMTDVDDFKTINDQYGHTTGD 281 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+A ++ R GG+EF L ++E A +R+ IE ++ Sbjct: 282 SVMATIATIFKQTLPESACTVRFGGDEFMIVLLANTENAKA-YTELVRRSIERETSLLAF 340 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T+S GI+E + + + RAD+ALY +K +GRN+V F D Sbjct: 341 KN--QVTMSFGISELMPNDSLQDALTRADEALYCSKHTGRNQVTTFQD 386 >gi|320156316|ref|YP_004188695.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio vulnificus MO6-24/O] gi|319931628|gb|ADV86492.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio vulnificus MO6-24/O] Length = 320 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 20/183 (10%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDY 138 S + LKE + + +S++SR D L+GL N + + SL ++ S+V FDID+ Sbjct: 142 SKTHLKE---TNHHLSEISRRDGLTGLFNRAFWEQSLKEEFSRMQFLDTPSSLVIFDIDH 198 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK++ND +GH GD+VI + L GR GGEEF +S +A + Sbjct: 199 FKKVNDTYGHHAGDEVIRRTASLLKKTARNSDLCGRFGGEEFTVLLPHTSADQARYFSER 258 Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRN 253 LRK IE + + +I+ TIS G+ E H E + AD ALY +K+ GRN Sbjct: 259 LRKRIEQEIVCVEKF-AINYTISLGVCEFDAKFTSHTEWLKA----ADSALYHSKEGGRN 313 Query: 254 RVV 256 + Sbjct: 314 QTT 316 >gi|228924160|ref|ZP_04087436.1| GGDEF domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835650|gb|EEM81015.1| GGDEF domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 352 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 18/204 (8%) Query: 65 LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118 L++++ +V + S+ GYI+ +L+ ELF + Q + ID L+ L N F Sbjct: 150 LIKDIQVVGLYFISSITTGYITFISANYVLQSNELF---QTMKQYATIDALTRLGNVRQF 206 Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 IS+ N+ ++ DID+FK +ND +GHP GD+V+ + L P Sbjct: 207 DLEMNRHISNKNMKNDPFCLLLIDIDHFKYVNDMYGHPAGDEVLKQVGCILRETSQFPDL 266 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 R GGEEFA + +R +EN + G I IT+S G++E ++E Sbjct: 267 AFRKGGEEFALLIPNMGLAYGVRVGEQIRTAVENHPFQLLDGKKIKITVSVGVSE--YEE 324 Query: 232 PISTIIYRADQALYVAKKSGRNRV 255 I AD ALY +K++GRN+V Sbjct: 325 SPEQFIQAADDALYYSKRNGRNKV 348 >gi|157375319|ref|YP_001473919.1| diguanylate cyclase with PAS/PAC sensor [Shewanella sediminis HAW-EB3] gi|157317693|gb|ABV36791.1| diguanylate cyclase with PAS/PAC sensor [Shewanella sediminis HAW-EB3] Length = 305 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 89/168 (52%), Gaps = 10/168 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 ++++ + D L+GL N ++ +G E L+++ D+D+FK++ND +GH VG Sbjct: 140 KLTEQATYDSLTGLYNRREGLNRVGELYELTRRNKMPLAVLMLDVDHFKRVNDQYGHQVG 199 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ + F+++ L + R GGEEF +E +A A R + + +S Sbjct: 200 DQALHFIANTLRQTSRKSDVLVRYGGEEFLIFLPNVAEGDAITFAERYRTALAKKAMRLS 259 Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258 +H+T+S GI+ C+++ ++ +I+ AD ALY AK RN V + Sbjct: 260 KSQRLHLTVSIGIS--CYRQQTLTDLIHEADIALYEAKSRDRNTVCSY 305 >gi|331662969|ref|ZP_08363879.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA143] gi|331058768|gb|EGI30745.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA143] Length = 460 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|15806005|ref|NP_294705.1| GGDEF family protein [Deinococcus radiodurans R1] gi|6458709|gb|AAF10558.1|AE001950_10 GGDEF family protein [Deinococcus radiodurans R1] Length = 344 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 4/176 (2%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFK 140 L+G + G L R + ++ D L+GL N AF ++ + ++ D+D+FK Sbjct: 166 LVGALFGQQAIRLQRQARRSAHDAQRDPLTGLFNRRAFDQAVRQTVQGGTLALLDLDHFK 225 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND+ GH GD+V+ ++D L+ R GGEEFA G EA L + +R Sbjct: 226 AINDHHGHMAGDRVLRGVADVLLDHLPAGGSAYRWGGEEFALLLPGLFPPEAEDLLDSVR 285 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + Q+ +G H+T+SAG+ + E + I D AL AK++GRNRV+ Sbjct: 286 QEV---QVRSFAG-GAHVTLSAGLGQYTVPEQLPGIFSEVDAALLAAKRAGRNRVM 337 >gi|320160392|ref|YP_004173616.1| hypothetical protein ANT_09820 [Anaerolinea thermophila UNI-1] gi|319994245|dbj|BAJ63016.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1] Length = 525 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 13/170 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149 + + S D L+ LNH AF+ L +K LS++ DID+FK+ ND +GH Sbjct: 343 HQEVETRSMQDSLTTALNHGAFLQKLSEEAQKALRGAYPLSLIMLDIDHFKEYNDRYGHL 402 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ L+ + + +VGR GGEEFA ++ +A +A ++K + + Sbjct: 403 AGDQVLIELTRHIQRYLKSTDWVGRWGGEEFAVILPNATIPQAWGVARRIQKSLTRMTLK 462 Query: 210 ISSG-PSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255 G P T+S GIA C + I +I ADQ LY AK GR+++ Sbjct: 463 DREGNPIPAPTVSQGIA--CFPQEADEIYALIDLADQRLYRAKSRGRDQI 510 >gi|312879201|ref|ZP_07739001.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM 12260] gi|310782492|gb|EFQ22890.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM 12260] Length = 300 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 10/168 (5%) Query: 98 NRISQLSR---IDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFG 147 +R+S L R +D L+ N +L + E+ ++FFDID+FK +ND +G Sbjct: 130 DRLSILERMAYLDPLTQTGNRRYLEDTLKDWTEEFQGNGWPFGVLFFDIDHFKNVNDRYG 189 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+A ++ + VGR GGEEF +A LR ++E S Sbjct: 190 HATGDQVLAMVARTIQGNLRNWDVVGRWGGEEFLVLCKNVDAPTLKEVAERLRLLVEAST 249 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + +T+S G+ ++ ++ RAD+ LY +K+ GRNRV Sbjct: 250 CRGEDGSDVQVTVSCGVTLAEFQDSPELLVSRADRLLYRSKQEGRNRV 297 >gi|269139665|ref|YP_003296366.1| GGDEF domain protein [Edwardsiella tarda EIB202] gi|267985326|gb|ACY85155.1| GGDEF domain protein [Edwardsiella tarda EIB202] gi|304559535|gb|ADM42199.1| hypothetical protein ETAF_2093 [Edwardsiella tarda FL6-60] Length = 302 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 83/166 (50%), Gaps = 6/166 (3%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFG 147 L+ L R+ L+ D L+GL N F SSL S S+ D+D+FKQIND FG Sbjct: 132 LRYLARVRGRLRYLALFDDLTGLPNRRHFYSSLMSQPLPRHFSLFIIDLDHFKQINDEFG 191 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+V+ L F F R+GGEEF A + SE A + A R + S Sbjct: 192 HAVGDRVLCQFGRLLHSEFVGSAFPARIGGEEF--AVILESEDRAWLEARAARLQQQASM 249 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + I+ + ++I GI E ++ + R D ALY AK +GRN Sbjct: 250 VRITEQRGLTVSIGVGIY--AAGETLAHFVARVDGALYQAKGAGRN 293 >gi|152994923|ref|YP_001339758.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150835847|gb|ABR69823.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 332 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 5/154 (3%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ L N A S + + + + ++ DID+FK IND +GH +GD V+ ++D L Sbjct: 181 DDLTNLKNRHALKADFSVIYKHFQSIHMLMIDIDHFKSINDKYGHDIGDSVLTEVADLLT 240 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + RLGGEEF S++ A +A +R+ IE +I +S I +T+S G Sbjct: 241 QSIQVKE-IYRLGGEEFVCLLKDISDENAYKIAEKVRQSIEQ-KIFLSHNTPIQVTVSIG 298 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I+ + + + ADQ LY AK+ GRN++ C Sbjct: 299 ISSLQKEHEFTDFLRSADQKLYQAKREGRNQICC 332 >gi|91793907|ref|YP_563558.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91715909|gb|ABE55835.1| diguanylate cyclase [Shewanella denitrificans OS217] Length = 518 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 81/163 (49%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + +N L I DID+FK INDNFGH GDK Sbjct: 354 QKLNLLDPLTQLANRAALEDKMEQEYRHHKRFNTPLWIAVIDIDHFKSINDNFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF +E + L N +R+ I+N + Sbjct: 414 TLQVIAMALKNSLRESEFVARYGGEEFVLLLPDVTELHISQLLNRVREKIKNIPFKFKNQ 473 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A+ E + RAD ALY AK +GR+RVV Sbjct: 474 -RITVTLSIGAAQVLENELCTETFERADAALYKAKNNGRDRVV 515 >gi|323160592|gb|EFZ46533.1| diguanylate cyclase domain protein [Escherichia coli E128010] gi|323170144|gb|EFZ55799.1| diguanylate cyclase domain protein [Escherichia coli LT-68] Length = 458 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 279 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 332 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 333 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 392 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 393 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 452 Query: 257 CFS 259 + Sbjct: 453 LWK 455 >gi|320179730|gb|EFW54678.1| Putative Heme-regulated two-component response regulator [Shigella boydii ATCC 9905] Length = 460 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|323978342|gb|EGB73428.1| GGDEF domain-containing protein [Escherichia coli TW10509] Length = 460 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|160898913|ref|YP_001564495.1| diguanylate cyclase [Delftia acidovorans SPH-1] gi|160364497|gb|ABX36110.1| diguanylate cyclase [Delftia acidovorans SPH-1] Length = 393 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ LLN AF + + +S++ DID+FK+IND++GH GD+V+ ++ Sbjct: 228 DSLTNLLNRRAFQEAAELRLADPHMAPISVLIGDIDHFKRINDSWGHDCGDRVLQAVAQT 287 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L V R GGEEF + ++ QEA +A +R + +++G +TIS Sbjct: 288 LQQHVRNDDLVCRFGGEEFVLLLMRTTPQEAERVAQRIRAQLSADGYVLAAGQ--RVTIS 345 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 GIA ++ + RAD LY AK++GR+RV +D Sbjct: 346 FGIAPVAANTALTDALTRADGLLYAAKQAGRDRVHVATD 384 >gi|90419568|ref|ZP_01227478.1| response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336505|gb|EAS50246.1| response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 454 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 75/127 (59%), Gaps = 2/127 (1%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ DID+FK+IND +GH GD V+ + +L R GGEEFA +G+ E Sbjct: 323 SVLMADIDHFKRINDGWGHGAGDLVLKDFARRLSGSLRASDLACRFGGEEFAVLMIGADE 382 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248 A +A+ +R+ + + I +G + +T+S G+A ++ +T+I RADQALY AK Sbjct: 383 TTAMAVADRIRRSVCDLPFQI-AGELLTVTVSEGLAVFDARRDNAATLIERADQALYEAK 441 Query: 249 KSGRNRV 255 + GRNRV Sbjct: 442 RDGRNRV 448 >gi|74312145|ref|YP_310564.1| hypothetical protein SSON_1634 [Shigella sonnei Ss046] gi|123617146|sp|Q3Z1N3|YDDV_SHISS RecName: Full=Diguanylate cyclase yddV; Short=DGC gi|73855622|gb|AAZ88329.1| conserved hypothetical protein [Shigella sonnei Ss046] Length = 460 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVHSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|323964199|gb|EGB59683.1| GGDEF domain-containing protein [Escherichia coli M863] gi|327254139|gb|EGE65768.1| diguanylate cyclase domain protein [Escherichia coli STEC_7v] Length = 460 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|327440463|dbj|BAK16828.1| response regulator containing a CheY-like receiver domain and a GGDEF domain [Solibacillus silvestris StLB046] Length = 545 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 10/200 (5%) Query: 69 LSLVIISITISLLLGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 L + + +L+ Y+ ++ EL I + ++QL ++ L + Sbjct: 209 LDFIKKPLDADILISYVRNRLVFKQALELSIMTDELTQLYNRKYMNTQLEF--LMEQFEK 266 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 E+ SI DID+FK IND +GH VGD+V+ S+ ++ + R GGEEF Sbjct: 267 RGEQFSIAIADIDFFKNINDTYGHIVGDEVLKGFSNLIMSAKREEDILFRFGGEEFVLVM 326 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQ 242 +S+ A + LR I+ Q + S +IT S+GIAE H K P ++ +ADQ Sbjct: 327 PNTSKNTAFSIMERLRTIV-GKQPFKGNEQSFNITFSSGIAEINHQNKHP-KALVEQADQ 384 Query: 243 ALYVAKKSGRNRVVCFSDIE 262 ALY AK SGRN+ V F+ E Sbjct: 385 ALYKAKTSGRNQTVLFTKEE 404 >gi|320156561|ref|YP_004188940.1| amino acid transporter [Vibrio vulnificus MO6-24/O] gi|319931873|gb|ADV86737.1| amino acid transporter [Vibrio vulnificus MO6-24/O] Length = 388 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + ++S D L+G N A ISS + L + DID+FK +ND +GH GD Sbjct: 224 LQEMSLKDNLTGFFNRHGLEQKLPALISSAQHRQQPLIAMMCDIDHFKLVNDTYGHQEGD 283 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ ++ + R GGEEF A LA +R IE SQ Sbjct: 284 IILQRCAEAIRAQLPQEHLAFRYGGEEFLIILSQYELVRAKQLAETIRMTIEQSQF--VQ 341 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P H+T+S G+ E + + +++ RADQALY+AK GRN+VV Sbjct: 342 LPERHLTMSFGLTELSTLDNVESMVKRADQALYLAKSQGRNQVV 385 >gi|146339021|ref|YP_001204069.1| diguanylate cyclase [Bradyrhizobium sp. ORS278] gi|146191827|emb|CAL75832.1| Putative diguanylate cyclase (GGDEF) with GAF and HAMP domains [Bradyrhizobium sp. ORS278] Length = 648 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 77/157 (49%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + + + +S+V D+D+FK NDN GH GD V+ + Sbjct: 444 DVLTGLNNRRYLLETARRELLRAARHKSPVSVVTLDVDHFKTFNDNHGHDAGDTVLRHVG 503 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L F R GGEEF G++ +E + A +LR IE+ +I + +T Sbjct: 504 EILRATFADDGVPCRFGGEEFVVLLPGATTEEGGVRAEELRARIESMKIRYADSYLPRVT 563 Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255 ISAG+A I R AD ALY AK+ GRNRV Sbjct: 564 ISAGVASYPDAGGSFMDILRVADDALYQAKQKGRNRV 600 >gi|66044929|ref|YP_234770.1| GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63255636|gb|AAY36732.1| GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 354 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 15/240 (6%) Query: 21 SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---IISIT 77 S S +I S ++ + +A L + L+P G++ V L + I S++ Sbjct: 97 SLSVAVMIILCSTLLVVYTRDYLLVA--VLAWCILSPAQGVDTDSVATLFMTLFFITSVS 154 Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134 + +L + L+ + ++ +LS D L+ +LN A + +L ++ N + Sbjct: 155 LGSVLNHTYTRTLRTVLSLEHQFRELSMTDDLTAILNRRALMQALDNHVLNNSAGYFLML 214 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID FK IND FGH GD+ + ++ L G+ F GR+GGEEF SE +A Sbjct: 215 DIDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAF-GRMGGEEFGVILPMCSEDDARD 273 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 DL + I S ++ P +T SAG+A+ S ++ AD LY AK+ G++R Sbjct: 274 YVLDLLECIRKS---LAVSP---LTCSAGLADIPAAADSSAVLKTADINLYKAKRGGKDR 327 >gi|326424067|ref|NP_761576.2| GGDEF family protein [Vibrio vulnificus CMCP6] gi|319999445|gb|AAO11103.2| GGDEF family protein [Vibrio vulnificus CMCP6] Length = 398 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + ++S D L+G N A ISS + L + DID+FK +ND +GH GD Sbjct: 234 LQEMSLKDNLTGFFNRHGLEQKLPALISSAQHRQQPLIAMMCDIDHFKLVNDTYGHQEGD 293 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ ++ + R GGEEF A LA +R IE SQ Sbjct: 294 IILQRCAEAIRAQLPQQHLAFRYGGEEFLIILSQYELVRAKQLAETIRMTIEQSQF--VQ 351 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P H+T+S G+ E + + +++ RADQALY+AK GRN+VV Sbjct: 352 LPERHLTMSFGLTELSTLDNVESMVKRADQALYLAKSQGRNQVV 395 >gi|307720346|ref|YP_003891486.1| response regulator receiver modulated diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306978439|gb|ADN08474.1| response regulator receiver modulated diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 417 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 81/164 (49%), Gaps = 7/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+ + D L+GL N F ++ Y EK SI DID+FK+IND +GH VGD Sbjct: 251 ITNYANRDYLTGLYNRRYFFETINEYIDEIKDSGEKFSIGMIDIDHFKKINDTYGHDVGD 310 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KVI L+D L V R GGEEF ++ A + N LR+ E ++ Sbjct: 311 KVITALADILRSSTNPHDVVARFGGEEFCVVLKNINQYSAHEIFNRLREEAEKFSFHLKD 370 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I+ ++S G +E + I AD LY AK +GR++VV Sbjct: 371 EQYINFSVSIGALLFNEEESLEENINAADMLLYKAKDNGRDQVV 414 >gi|300819785|ref|ZP_07099973.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] gi|300527666|gb|EFK48728.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] Length = 460 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|157158939|ref|YP_001462767.1| diguanylate cyclase [Escherichia coli E24377A] gi|170683103|ref|YP_001743737.1| diguanylate cyclase [Escherichia coli SMS-3-5] gi|193066931|ref|ZP_03047900.1| diguanylate cyclase [Escherichia coli E110019] gi|256018293|ref|ZP_05432158.1| putative diguanylate cyclase YddV [Shigella sp. D9] gi|301023411|ref|ZP_07187196.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] gi|307314761|ref|ZP_07594356.1| diguanylate cyclase [Escherichia coli W] gi|331673019|ref|ZP_08373796.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA280] gi|332279339|ref|ZP_08391752.1| diguanylate cyclase [Shigella sp. D9] gi|157080969|gb|ABV20677.1| diguanylate cyclase [Escherichia coli E24377A] gi|170520821|gb|ACB18999.1| diguanylate cyclase [Escherichia coli SMS-3-5] gi|192959521|gb|EDV89955.1| diguanylate cyclase [Escherichia coli E110019] gi|300397039|gb|EFJ80577.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] gi|306905728|gb|EFN36255.1| diguanylate cyclase [Escherichia coli W] gi|315060766|gb|ADT75093.1| predicted diguanylate cyclase [Escherichia coli W] gi|323378668|gb|ADX50936.1| diguanylate cyclase [Escherichia coli KO11] gi|331069798|gb|EGI41176.1| diguanylate cyclase YddV (DGC) [Escherichia coli TA280] gi|332101691|gb|EGJ05037.1| diguanylate cyclase [Shigella sp. D9] Length = 460 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|114321024|ref|YP_742707.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] gi|114227418|gb|ABI57217.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] Length = 509 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFI---------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + + +R D L+GL N +++G + L++V D+D+FKQ+ND +GH Sbjct: 334 LEERTRRDPLTGLYNRDQLFRRLQDEFTGAAMGGW--PLTLVVLDLDHFKQVNDEYGHLA 391 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ +S L V R GGEEF G Q+A + + + + + + + Sbjct: 392 GDQVLRRVSAVLHDAVRGEDVVARYGGEEFVLLLPGVHWQDAQRVVRRVLERVRGTDLGL 451 Query: 211 SSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256 P + +T SAG+A + P +++ ADQALY AK GRNR+V Sbjct: 452 KEAPQLRVTASAGLAVQEGGRPFVDTDSLVAAADQALYTAKNQGRNRLV 500 >gi|257487298|ref|ZP_05641339.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009096|gb|EGH89152.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 425 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 22/188 (11%) Query: 85 ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128 + G+I + IS + ++L R D L+GL N A I + + Sbjct: 233 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 292 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +++ DID+FK +ND +GHP GD+V+ ++ L R GGEEF SS Sbjct: 293 FTLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLIFVPDSS 352 Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 AA LA+ +R+ +E I N S +TIS G+A+ E +++I RAD+ALY A Sbjct: 353 LDHAAELADRIREGVEGLLIPNTGS-----VTISLGVAQLSPGETAASLIQRADKALYQA 407 Query: 248 KKSGRNRV 255 K+ GRNRV Sbjct: 408 KRRGRNRV 415 >gi|161502892|ref|YP_001570004.1| hypothetical protein SARI_00950 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864239|gb|ABX20862.1| hypothetical protein SARI_00950 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 570 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 19/201 (9%) Query: 74 ISITISLLLGYISGSIL----------KELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 ISI ++LL G + +L + +F+ + + + D L+ L N A Sbjct: 358 ISIALTLLWGLFTAMLLISWGVIRHMVRNMFVLQSSLQWQAWHDPLTRLYNRGALFEKAS 417 Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 + + S++ D+DYFK +ND FGH GD+V++ + + + GR+G Sbjct: 418 RLAQRYREFRKPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRSHDIAGRVG 477 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234 GEEF +++ +A +A +R+ I + +I ++ ++ I+ S GI AE Sbjct: 478 GEEFCIVLPDATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFE 537 Query: 235 TIIYRADQALYVAKKSGRNRV 255 + AD+ LY AK+SGRNR+ Sbjct: 538 QLQSLADKRLYYAKQSGRNRI 558 >gi|170020179|ref|YP_001725133.1| diguanylate cyclase [Escherichia coli ATCC 8739] gi|312971654|ref|ZP_07785829.1| diguanylate cyclase domain protein [Escherichia coli 1827-70] gi|169755107|gb|ACA77806.1| diguanylate cyclase [Escherichia coli ATCC 8739] gi|310336251|gb|EFQ01451.1| diguanylate cyclase domain protein [Escherichia coli 1827-70] gi|323937458|gb|EGB33735.1| GGDEF domain-containing protein [Escherichia coli E1520] Length = 460 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|239905372|ref|YP_002952111.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] gi|239795236|dbj|BAH74225.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1] Length = 406 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 14/194 (7%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------L 122 S+ I + +L S + EL + + + Q ++ D L+GL N F+ L Sbjct: 204 SMWIFAFLTFCVLSMTSSRVEAELREARDALRQQAQTDALTGLSNRRHFLEQAQAVLEDL 263 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 ++ + S++ D+D+FK+IND GH GD + + L +GRLGGEEF Sbjct: 264 EAHGGRASLIMLDLDHFKRINDVHGHQAGDLALQEAARHLRAALRDGDVIGRLGGEEFGV 323 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 G EA +A LR+ + S+ + +T S G+A+ + + +++ +AD+ Sbjct: 324 LLPGLEAGEALAVARQLRRAVAASRPG-----GLRVTASFGLADGALR--LDSLLAQADE 376 Query: 243 ALYVAKKSGRNRVV 256 LY AK++GR+R+ Sbjct: 377 YLYAAKEAGRDRIA 390 >gi|190892031|ref|YP_001978573.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190697310|gb|ACE91395.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 417 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 12/187 (6%) Query: 89 ILKELFIS-YNRIS--QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 IL+EL + +RI Q + D L+ + AF IS + +LS + FDID+ Sbjct: 154 ILEELAAAAMDRIDLMQSAATDSLTEAMTRRAFKQEADQLISLALRHQHELSCIVFDIDH 213 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FKQ+ND +GH GD V+ ++ GR+GGEEFA Q A +A Sbjct: 214 FKQVNDRYGHAAGDAVLKAVASVCKATLRAGDLFGRIGGEEFAVVLPHVDRQGALAVAEK 273 Query: 199 LRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 LR I I+ G ++H+T S G A + I T++ +AD A+Y AK GRNR V Sbjct: 274 LRAAIAFQPIHGDHG-NLHVTASLGSSALSIVSKDIETLLAQADAAMYQAKHGGRNRCVS 332 Query: 258 FSDIENN 264 +S I + Sbjct: 333 WSSIHAD 339 >gi|149376359|ref|ZP_01894122.1| diguanylate cyclase [Marinobacter algicola DG893] gi|149359373|gb|EDM47834.1| diguanylate cyclase [Marinobacter algicola DG893] Length = 613 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 8/176 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140 S ++EL + +++ LS D L+GL N + + L+I D D+FK Sbjct: 430 STMRELEKANRQLANLSLNDALTGLYNRRHMDNLLPELCAEARRTGQPLTIALLDADHFK 489 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199 +ND++GH GD+ + ++ L P V R GGEEFA G+ + A + N + Sbjct: 490 AVNDSWGHEFGDRCLQHIAGILRRHVKRPRDVAIRFGGEEFAILLPGTDAEGALGVCNGI 549 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I ++ G + +T+SAG A ++ + RAD+ALY AK GRNR Sbjct: 550 LEDIAAIRVPADDGTPVTLTMSAGTATLLQEDDERDLFRRADEALYRAKARGRNRT 605 >gi|331652852|ref|ZP_08353857.1| diguanylate cyclase YddV (DGC) [Escherichia coli M718] gi|331048950|gb|EGI21022.1| diguanylate cyclase YddV (DGC) [Escherichia coli M718] Length = 460 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|15801648|ref|NP_287665.1| hypothetical protein Z2219 [Escherichia coli O157:H7 EDL933] gi|15831349|ref|NP_310122.1| hypothetical protein ECs2095 [Escherichia coli O157:H7 str. Sakai] gi|145698262|ref|NP_416007.3| diguanylate cyclase; cold- and stationary phase-induced oxygen-dependent biofilm regulator; positively regulates csgBAC and pgaABCD [Escherichia coli str. K-12 substr. MG1655] gi|168748905|ref|ZP_02773927.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4113] gi|168756138|ref|ZP_02781145.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4401] gi|168761414|ref|ZP_02786421.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4501] gi|168768973|ref|ZP_02793980.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4486] gi|168774275|ref|ZP_02799282.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4196] gi|168781468|ref|ZP_02806475.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4076] gi|168788451|ref|ZP_02813458.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC869] gi|168799377|ref|ZP_02824384.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC508] gi|170081161|ref|YP_001730481.1| diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B] gi|188493713|ref|ZP_03000983.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638] gi|195936982|ref|ZP_03082364.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4024] gi|208811026|ref|ZP_03252859.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4206] gi|208814781|ref|ZP_03255960.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4045] gi|208818469|ref|ZP_03258789.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4042] gi|209396130|ref|YP_002270491.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4115] gi|217329403|ref|ZP_03445483.1| diguanylate cyclase [Escherichia coli O157:H7 str. TW14588] gi|238900712|ref|YP_002926508.1| putative diguanylate cyclase [Escherichia coli BW2952] gi|254793036|ref|YP_003077873.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. TW14359] gi|256022830|ref|ZP_05436695.1| predicted diguanylate cyclase [Escherichia sp. 4_1_40B] gi|261224548|ref|ZP_05938829.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str. FRIK2000] gi|261257117|ref|ZP_05949650.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str. FRIK966] gi|291282592|ref|YP_003499410.1| Diguanylate cyclase yddV [Escherichia coli O55:H7 str. CB9615] gi|293414842|ref|ZP_06657485.1| diguanylate cyclase yddV [Escherichia coli B185] gi|300950964|ref|ZP_07164840.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1] gi|300956093|ref|ZP_07168415.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1] gi|301018348|ref|ZP_07182854.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1] gi|301645180|ref|ZP_07245136.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] gi|307138140|ref|ZP_07497496.1| diguanylate cyclase [Escherichia coli H736] gi|331642073|ref|ZP_08343208.1| diguanylate cyclase YddV (DGC) [Escherichia coli H736] gi|92087009|sp|P0AA89|DOSC_ECOLI RecName: Full=Diguanylate cyclase DosC; Short=DGC gi|93140421|sp|P0AA90|YDDV_ECO57 RecName: Full=Diguanylate cyclase yddV; Short=DGC gi|12515187|gb|AAG56278.1|AE005356_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361561|dbj|BAB35518.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|145693134|gb|AAC74563.3| diguanylate cyclase; cold- and stationary phase-induced oxygen-dependent biofilm regulator; positively regulates csgBAC and pgaABCD [Escherichia coli str. K-12 substr. MG1655] gi|169888996|gb|ACB02703.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B] gi|187770056|gb|EDU33900.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4196] gi|188016729|gb|EDU54851.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4113] gi|188488912|gb|EDU64015.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638] gi|189000809|gb|EDU69795.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4076] gi|189356678|gb|EDU75097.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4401] gi|189361865|gb|EDU80284.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4486] gi|189368142|gb|EDU86558.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4501] gi|189371739|gb|EDU90155.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC869] gi|189378163|gb|EDU96579.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC508] gi|208724532|gb|EDZ74240.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4206] gi|208731429|gb|EDZ80117.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4045] gi|208738592|gb|EDZ86274.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4042] gi|209157530|gb|ACI34963.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4115] gi|209770568|gb|ACI83596.1| hypothetical protein ECs2095 [Escherichia coli] gi|209770570|gb|ACI83597.1| hypothetical protein ECs2095 [Escherichia coli] gi|209770572|gb|ACI83598.1| hypothetical protein ECs2095 [Escherichia coli] gi|209770574|gb|ACI83599.1| hypothetical protein ECs2095 [Escherichia coli] gi|209770576|gb|ACI83600.1| hypothetical protein ECs2095 [Escherichia coli] gi|217317842|gb|EEC26270.1| diguanylate cyclase [Escherichia coli O157:H7 str. TW14588] gi|238862231|gb|ACR64229.1| predicted diguanylate cyclase [Escherichia coli BW2952] gi|254592436|gb|ACT71797.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str. TW14359] gi|260449387|gb|ACX39809.1| diguanylate cyclase [Escherichia coli DH1] gi|290762465|gb|ADD56426.1| Diguanylate cyclase yddV [Escherichia coli O55:H7 str. CB9615] gi|291432490|gb|EFF05469.1| diguanylate cyclase yddV [Escherichia coli B185] gi|299882541|gb|EFI90752.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1] gi|300317030|gb|EFJ66814.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1] gi|300449760|gb|EFK13380.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1] gi|301076540|gb|EFK91346.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] gi|315136130|dbj|BAJ43289.1| diguanylate cyclase yddV [Escherichia coli DH1] gi|320190058|gb|EFW64709.1| Putative Heme-regulated two-component response regulator [Escherichia coli O157:H7 str. EC1212] gi|320636922|gb|EFX06787.1| diguanylate cyclase [Escherichia coli O157:H7 str. G5101] gi|320642277|gb|EFX11570.1| diguanylate cyclase [Escherichia coli O157:H- str. 493-89] gi|320647629|gb|EFX16386.1| diguanylate cyclase [Escherichia coli O157:H- str. H 2687] gi|320653261|gb|EFX21400.1| diguanylate cyclase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658966|gb|EFX26592.1| diguanylate cyclase [Escherichia coli O55:H7 str. USDA 5905] gi|320663802|gb|EFX31031.1| diguanylate cyclase [Escherichia coli O157:H7 str. LSU-61] gi|323942161|gb|EGB38335.1| GGDEF domain-containing protein [Escherichia coli E482] gi|326340639|gb|EGD64436.1| Putative Heme-regulated two-component response regulator [Escherichia coli O157:H7 str. 1044] gi|326340891|gb|EGD64684.1| Putative Heme-regulated two-component response regulator [Escherichia coli O157:H7 str. 1125] gi|331038871|gb|EGI11091.1| diguanylate cyclase YddV (DGC) [Escherichia coli H736] gi|332343158|gb|AEE56492.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 460 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|328470365|gb|EGF41276.1| GGDEF family protein [Vibrio parahaemolyticus 10329] Length = 454 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 95/167 (56%), Gaps = 7/167 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147 K+L ++ ++ +L+ D L+ L N I ++L S + ++++ FDID FK IND +G Sbjct: 271 KQLTLANQQLLELTLTDPLTKLYNRRHLIERLATLSSLQKNVTVMVFDIDDFKSINDKYG 330 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD+ I ++D + + + R+GGEEFA SE+EA LA + + + Sbjct: 331 HLIGDQAIVAVADTAKSLTDERITLARIGGEEFALVTASLSEKEAETLAKAICSCVYDRP 390 Query: 208 INISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRN 253 + + +G +IH+++S G A ++E I ++ ADQ +Y K +G+N Sbjct: 391 V-LLNGQAIHVSVSLGCA--YYREFKGIINLHEADQLMYCGKMNGKN 434 >gi|323156581|gb|EFZ42727.1| diguanylate cyclase domain protein [Escherichia coli EPECa14] gi|323176588|gb|EFZ62180.1| diguanylate cyclase domain protein [Escherichia coli 1180] Length = 458 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 279 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 332 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 333 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 392 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 393 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 452 Query: 257 CFS 259 + Sbjct: 453 LWK 455 >gi|307946357|ref|ZP_07661692.1| diguanylate cyclase [Roseibium sp. TrichSKD4] gi|307770021|gb|EFO29247.1| diguanylate cyclase [Roseibium sp. TrichSKD4] Length = 651 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 80/159 (50%), Gaps = 10/159 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F+ SL S EK LS++ D+D+FK NDN GH GD V+ + Sbjct: 454 DPLTGLFNRRHFVESLRSKIEKARHKGHSLSLISIDVDHFKTFNDNNGHDAGDMVLRAVG 513 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L F R+GGEEF ++ +EA A LR++IE + IT Sbjct: 514 TALEQQFEGDDLPCRIGGEEFMVLLPDATSEEAMERAEALRQVIEKITVRYGEKNLPKIT 573 Query: 220 ISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 IS+G+A C H +I AD ALY +K SGRN+V Sbjct: 574 ISSGVAS-CPDHGMMPQDLIKVADDALYRSKDSGRNQVT 611 >gi|296272721|ref|YP_003655352.1| PAS/PAC and GAF sensor-containg diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296096895|gb|ADG92845.1| diguanylate cyclase with PAS/PAC and GAF sensors [Arcobacter nitrofigilis DSM 7299] Length = 649 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 80/160 (50%), Gaps = 7/160 (4%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N FI S Y LS++ FDID+FK +ND FGH +GD V+ ++ Sbjct: 489 DFLTGLPNRRYFIEQSELEISRKLRYGGSLSLIMFDIDHFKILNDKFGHKMGDLVLQKIA 548 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + V +GR+GGEEFA + +EA +A LR I + + T Sbjct: 549 EITRSVLRDIDIIGRIGGEEFAILLPRTDIKEAENIAERLRLEISKGIVKTDKVEITNFT 608 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S G+ + I ++ AD ALY AK SGRNRV F+ Sbjct: 609 ASFGVVLDTKNKTIDELLVSADNALYEAKNSGRNRVCIFN 648 >gi|167908351|ref|ZP_02495556.1| diguanylate cyclase [Burkholderia pseudomallei NCTC 13177] Length = 311 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 9/168 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + + D L+G+ N F S Y LS++ FD+D+FK IND FGH VG Sbjct: 144 KLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKTINDRFGHVVG 203 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ ++V V + GR GGEEFA +S EA ++A +R+ I ++ I + Sbjct: 204 DNVLRVMAQRVVDVVRSQDTFGRFGGEEFALLLPCTSLDEAMLVAEKIRQTIGSTPIE-A 262 Query: 212 SGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258 G + +T S G A T++ AD ALY AK+ GRN V F Sbjct: 263 EGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310 >gi|188581672|ref|YP_001925117.1| diguanylate cyclase [Methylobacterium populi BJ001] gi|179345170|gb|ACB80582.1| diguanylate cyclase [Methylobacterium populi BJ001] Length = 532 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 94/200 (47%), Gaps = 18/200 (9%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAF------- 118 L L ++I +SLL G +EL S + ++L+R+ D L+GL N F Sbjct: 314 LVLCGLTILLSLLFG-------RELRRSADMQAELARLAGTDLLTGLPNRRRFEEAFEQA 366 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGG 177 + + L+++ D D+FK+ ND GH VGD V+ L+ L P R+GG Sbjct: 367 AKASRRADRPLALLVIDADHFKRYNDRHGHAVGDAVLKSLAKSLTESLRRPNDLAARVGG 426 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 EEFA + AA +A + + + + IT+S G+A + Sbjct: 427 EEFAVLLPDTDRAGAARIAEAIHAAVAGLAVPAAGIDPGSITVSIGLAVSAGDRATEDLY 486 Query: 238 YRADQALYVAKKSGRNRVVC 257 RAD ALYVAK+SGRNR C Sbjct: 487 RRADAALYVAKESGRNRTCC 506 >gi|157160966|ref|YP_001458284.1| diguanylate cyclase [Escherichia coli HS] gi|157066646|gb|ABV05901.1| diguanylate cyclase [Escherichia coli HS] Length = 460 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|146312192|ref|YP_001177266.1| diguanylate cyclase [Enterobacter sp. 638] gi|145319068|gb|ABP61215.1| diguanylate cyclase [Enterobacter sp. 638] Length = 564 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 16/194 (8%) Query: 77 TISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 T +LL+ ++ ++ +F N + + D L+ L N A + E+ Sbjct: 368 TATLLISWLVIRRMVSNMFTLQNSLQWQAWHDPLTRLNNRRALFDRAQALAEECRQQQLP 427 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 S++ D+D+FK IND FGH GDKV++ + + + GR+GGEEF G++ Sbjct: 428 FSVIQLDLDHFKSINDRFGHQAGDKVLSHTARLITHALRSSDVAGRVGGEEFCVVLPGAT 487 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQA 243 ++AA +A +R I +I + + ++ S G++ E + +I AD Sbjct: 488 AEQAAGVAERIRVSINRKEILVKKSTTARVSASLGVSSTEENANFDFEQLQSI---ADAR 544 Query: 244 LYVAKKSGRNRVVC 257 LY+AK+ GRN+VVC Sbjct: 545 LYLAKQQGRNQVVC 558 >gi|221066878|ref|ZP_03542983.1| diguanylate cyclase [Comamonas testosteroni KF-1] gi|220711901|gb|EED67269.1| diguanylate cyclase [Comamonas testosteroni KF-1] Length = 264 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 10/172 (5%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GL N F I + E ++ DID+FKQIND GH GD V+ Sbjct: 53 LSLRDPLTGLANRRHFRSVIEREIDRVARSGETALLLMLDIDHFKQINDEHGHIAGDMVL 112 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L + + R GGEEFA + +A LR+ IE++ I +SSG Sbjct: 113 QSVAQTLSEIIRPMDTLARFGGEEFAIVLPVCPAHQGRAVAERLRQAIEDNSIAVSSGQM 172 Query: 216 IHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + +T+S G A++ + RAD+ LY+AK +GRN VC + ++T Sbjct: 173 LKVTVSIGGVYAQQWIRSTAQLWTERADRQLYLAKSAGRN-CVCVEEPPDST 223 >gi|16804213|ref|NP_465698.1| hypothetical protein lmo2174 [Listeria monocytogenes EGD-e] gi|47095748|ref|ZP_00233354.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854] gi|224500161|ref|ZP_03668510.1| hypothetical protein LmonF1_10959 [Listeria monocytogenes Finland 1988] gi|224501027|ref|ZP_03669334.1| hypothetical protein LmonFR_00660 [Listeria monocytogenes FSL R2-561] gi|254831389|ref|ZP_05236044.1| hypothetical protein Lmon1_08522 [Listeria monocytogenes 10403S] gi|254899125|ref|ZP_05259049.1| hypothetical protein LmonJ_04914 [Listeria monocytogenes J0161] gi|254912734|ref|ZP_05262746.1| GGDEF domain-containing protein [Listeria monocytogenes J2818] gi|254937061|ref|ZP_05268758.1| GGDEF domain-containing protein [Listeria monocytogenes F6900] gi|284802621|ref|YP_003414486.1| hypothetical protein LM5578_2377 [Listeria monocytogenes 08-5578] gi|284995763|ref|YP_003417531.1| hypothetical protein LM5923_2328 [Listeria monocytogenes 08-5923] gi|16411644|emb|CAD00252.1| lmo2174 [Listeria monocytogenes EGD-e] gi|47015891|gb|EAL06818.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854] gi|258609664|gb|EEW22272.1| GGDEF domain-containing protein [Listeria monocytogenes F6900] gi|284058183|gb|ADB69124.1| hypothetical protein LM5578_2377 [Listeria monocytogenes 08-5578] gi|284061230|gb|ADB72169.1| hypothetical protein LM5923_2328 [Listeria monocytogenes 08-5923] gi|293590729|gb|EFF99063.1| GGDEF domain-containing protein [Listeria monocytogenes J2818] Length = 357 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 103/199 (51%), Gaps = 21/199 (10%) Query: 76 ITISLLLGYISGSIL------KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEK 128 + I+L++G +S ++ K+LF Y + S L + LS + I+ + + + + Sbjct: 164 VLIALVIGAVSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDAGSRQ 223 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF------GTPMFVGRLGGEEFAA 182 ++++ DIDYFK IND +GH GD ++ QL ++ G+ F R GGEEF+ Sbjct: 224 VTLMLIDIDYFKNINDTYGHDAGDAIL----KQLAIILKRNTSDGSEAF--RNGGEEFSI 277 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-AD 241 L ++ A +R+ E I SG + ITIS G++ S +++ AD Sbjct: 278 VLLDCPIEKGNFFAEQVRRETEEYDFMIPSGQVVKITISVGVSSSKDGANTSEGLFKSAD 337 Query: 242 QALYVAKKSGRNRVVCFSD 260 +ALY AK +GRN+ VC +D Sbjct: 338 EALYKAKLTGRNQ-VCIAD 355 >gi|323492736|ref|ZP_08097880.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] gi|323313111|gb|EGA66231.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] Length = 348 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 16/200 (8%) Query: 65 LVENLSLVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 LV N SLV ++I +++ +L+ + +S + QL+ D L+G+ N A + Sbjct: 146 LVINFSLVFMTI-------WVTAHVLEVKRRVSEASLGQLASRDALTGVYNRHALSHNFE 198 Query: 124 SYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 Y ++ +S++ D+D+FK +ND +GH VGD V++ + L+ V R+GGE Sbjct: 199 RYRQESSKLAMSLLILDLDFFKSVNDRYGHDVGDTVLS-QTAALLDSLSDEHLVYRIGGE 257 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EF A + A + A +R IE N P I +T S G+ + +++ Sbjct: 258 EFCVALHDTGLDAAKLKAEQIRNSIEQYCFNSPEEP-IALTASIGVYLCNQYANLESVLR 316 Query: 239 RADQALYVAKKSGRNRV-VC 257 AD+ LY AK++GRN+V VC Sbjct: 317 EADKELYHAKQNGRNQVKVC 336 >gi|320184820|gb|EFW59611.1| Putative Heme-regulated two-component response regulator [Shigella flexneri CDC 796-83] Length = 195 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 16 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 69 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 70 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 129 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 130 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 189 Query: 257 CFS 259 + Sbjct: 190 LWK 192 >gi|260362059|ref|ZP_05775055.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|260902869|ref|ZP_05911264.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|308094488|ref|ZP_05889717.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|308095559|ref|ZP_05906895.2| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|308085029|gb|EFO34724.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|308090635|gb|EFO40330.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|308107811|gb|EFO45351.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|308113814|gb|EFO51354.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] Length = 454 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 95/167 (56%), Gaps = 7/167 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147 K+L ++ ++ +L+ D L+ L N I ++L S + ++++ FDID FK IND +G Sbjct: 271 KQLTLANQQLLELTLTDPLTKLYNRRHLIERLATLSSLQKNVTVMVFDIDDFKSINDKYG 330 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD+ I ++D + + + R+GGEEFA SE+EA LA + + + Sbjct: 331 HLIGDQAIVAVADTAKSLTDERITLARIGGEEFALVTASLSEKEAETLAKAICSCVYDRP 390 Query: 208 INISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRN 253 + + +G +IH+++S G A ++E I ++ ADQ +Y K +G+N Sbjct: 391 V-LLNGQAIHVSVSLGCA--YYREFKGIINLHEADQLMYCGKMNGKN 434 >gi|260575447|ref|ZP_05843446.1| response regulator receiver modulated diguanylate cyclase [Rhodobacter sp. SW2] gi|259022367|gb|EEW25664.1| response regulator receiver modulated diguanylate cyclase [Rhodobacter sp. SW2] Length = 458 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 11/164 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ ID L+GL N + L + E+ +++ D+D FK +ND++GH GD V Sbjct: 289 RLAVIDPLTGLYNRRYALPQLAAIAERAQEAGQGFAVMVIDLDRFKAVNDHWGHAAGDAV 348 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++++L + R+GGEEF S +A A L +++ I + G Sbjct: 349 LVEVAERLTENLRKTDLLARIGGEEFLVVLPDSDLTDARATAERLCAVMQERPIQVQGG- 407 Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S+ +T+S G+A EP++ I+ RAD+AL +AK +GRN+V Sbjct: 408 SLSVTVSIGLAISNPARQVEPVADIVDRADRALMLAKANGRNKV 451 >gi|163748992|ref|ZP_02156243.1| sensory box/GGDEF domain protein [Shewanella benthica KT99] gi|161331368|gb|EDQ02256.1| sensory box/GGDEF domain protein [Shewanella benthica KT99] Length = 310 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 7/156 (4%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + F S L + ++ D+D FK +ND++GH +GDKV+ S Sbjct: 153 DNLTGLYNRNYFNSKLKDIYHQYKRFGHSFCVLMLDLDRFKMVNDSYGHLIGDKVLQEFS 212 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ V + R GGEEF + + A +A+ +RK + ++ + + T Sbjct: 213 KKVQQVLREVDLLARFGGEEFIVLLPNTKLEAAKDVADRIRKRVSKQRVLSQNHEPVTFT 272 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+AE + +II AD+ALY AK +GRNRV Sbjct: 273 VSIGVAEIGTDDEKESIIKLADEALYRAKNNGRNRV 308 >gi|144898150|emb|CAM75014.1| GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 470 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N ++ + YN ++V D+D+FK++ND GH GD V+ + Sbjct: 313 DSLTALPNRASLNERMAKEADRFRRYNRPFAVVLLDLDHFKRVNDELGHLTGDTVLVKFA 372 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + V T VGR GGEEF ++ ++A ++ L + + + T Sbjct: 373 TLALQVARTQDLVGRWGGEEFLILCSETTAEQAQVMTERLCRSVRECDFGLGR----RQT 428 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ISAGIA E I +++RAD ALY AK +GR++VV Sbjct: 429 ISAGIAAMRAGETIDVLLHRADLALYAAKNNGRDQVV 465 >gi|88797066|ref|ZP_01112656.1| Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Reinekea sp. MED297] gi|88779935|gb|EAR11120.1| Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Reinekea sp. MED297] Length = 324 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ LLN A ++ L Y + S++ D+DYFK IND +GHP+GD Sbjct: 158 LEKLAVTDELTDLLNRRAVMARLTGQLQLARRYGKPFSLMMCDLDYFKSINDTYGHPIGD 217 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINIS 211 +V+ +D L VGR+GGEEF + EA +A L + ++ ++ Sbjct: 218 EVLTVFADHLKQATREVDSVGRVGGEEFLILFPETPLAEAITVAERLCERCRDDRTVSAY 277 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G I + S G+ + + T++ R D ALY AK SGR+ V Sbjct: 278 DGTVITFSCSIGVVQCNADDSEKTLLNRVDVALYDAKASGRDTV 321 >gi|148253787|ref|YP_001238372.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] gi|146405960|gb|ABQ34466.1| Putative diguanylate cyclase (GGDEF) with GAF and HAMP domains [Bradyrhizobium sp. BTAi1] Length = 646 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N I + +S+V DID+FK NDN GH GD V+ + Sbjct: 444 DALTGLNNRRYLIETARRELLRAARSRTPVSVVTLDIDHFKSFNDNHGHEAGDTVLRHIG 503 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L F RLGGEEF + +EAA+ A +LR +E I+ G +T Sbjct: 504 EILKATFADGEMPCRLGGEEFVVLLPNCTIEEAALRAEELRARVEALNISYGDGMLPRVT 563 Query: 220 ISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255 IS G+A + E + I+ AD ALY AK+ GRNRV Sbjct: 564 ISVGVA--AYPEAGIDLPEILRVADGALYRAKQRGRNRV 600 >gi|319786618|ref|YP_004146093.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1] gi|317465130|gb|ADV26862.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1] Length = 478 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 11/160 (6%) Query: 107 DCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ LLN F+ ++ S + +++ D+D+FK IND GH GD+ + + Sbjct: 305 DALTRLLNRR-FLPTILRREVALQASTGRQFAVLMLDLDHFKAINDGHGHEAGDRALQHV 363 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIH 217 + LV ++ R GGEEF A LGS S+ EA +A+ LR+ I + + +S G + Sbjct: 364 AAILVENTRGSDYLFRYGGEEFVAV-LGSVSQTEAVAIAHALRRAISGAPLALSDGTRLQ 422 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ S G+A + ++ RAD A+Y AK++GR+RVV Sbjct: 423 LSASIGVAVQDGHPDYERVLARADAAMYQAKRAGRDRVVV 462 >gi|296273696|ref|YP_003656327.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296097870|gb|ADG93820.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] Length = 518 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 12/204 (5%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121 ++L I+ ITI +I + EL +Y + QLS ID L+ L N + I + Sbjct: 308 ITLFILLITIWYYFKHIRKT-ESELNYAYKYVQQLSAIDGLTKLYNKQYYLDNVLKLIQN 366 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEF 180 +N +S + D+D FK+ NDN+GH GD V+ +S + F + R+GGEEF Sbjct: 367 FSRFNSYVSFILIDVDNFKKYNDNYGHLKGDDVLIQVSKIIKNNFKRDTEYCFRVGGEEF 426 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAER--CHKEPISTII 237 + E+ +A+ L K I++ + + IT+S G+ + + I + Sbjct: 427 LIVSASKDEENGNKMADALCKKIQDKNLEHKFNENFGVITVSIGLVTKHISYDIKIDELY 486 Query: 238 YRADQALYVAKKSGRNRVVCFSDI 261 AD+ALY +K+SGRN+V F +I Sbjct: 487 NNADKALYQSKQSGRNKVTVFKEI 510 >gi|253687377|ref|YP_003016567.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753955|gb|ACT12031.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 235 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 4/151 (2%) Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ + N A I + E+ +++ DID+FK +ND +GHP GD VI L ++ Sbjct: 84 DPLTSVYNRGAIIERINHALERNQAALIVLDIDHFKLVNDTYGHPTGDAVICDLVSRVQN 143 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 V T +GR+GGEEF G + +A LA+ L + + +++ +S P +T S G+ Sbjct: 144 VLNTTSSIGRVGGEEFTILLEGHTLMQAVSLASRLHQDL--NRMPLSVLPQQRVTASFGV 201 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + K + AD ALY AK+ GRNRV Sbjct: 202 SWAPQKTRFDALYSAADAALYQAKEKGRNRV 232 >gi|37679909|ref|NP_934518.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|37198655|dbj|BAC94489.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 320 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 20/183 (10%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDY 138 S + LKE + + +S++SR D L+GL N + + SL ++ S+V FDID+ Sbjct: 142 SKTHLKE---TNHHLSEISRRDGLTGLFNRAFWEQSLKEEFSRMQFLDTPSSLVIFDIDH 198 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK++ND +GH GD+VI + L GR GGEEF +S +A + Sbjct: 199 FKKVNDTYGHHAGDEVIRRTASLLKKTARNSDLCGRFGGEEFTVLLPHTSADQARYFSER 258 Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRN 253 LRK IE + + +I+ TIS G+ E H E + AD ALY +K+ GRN Sbjct: 259 LRKRIEQEIVCVEKF-AINYTISLGVCEFDAKFTSHTEWLKA----ADSALYHSKEGGRN 313 Query: 254 RVV 256 + Sbjct: 314 QTT 316 >gi|95928597|ref|ZP_01311344.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95135387|gb|EAT17039.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 418 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 102/211 (48%), Gaps = 29/211 (13%) Query: 69 LSLVIISITI-SLLLGYISGSILKELFISYNRISQL-------SRIDCLSGLLNH----- 115 LS VI ++ I ++ YI LK+ Y ++ QL S D L+ L N Sbjct: 206 LSFVIFTLAILPIIYAYIQA--LKQKNREYQQVHQLYLDQSKRSITDPLTRLYNRFKLDE 263 Query: 116 ---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 +AF S +YN +++ D+DYFK IND +GH VGD V+ ++ L + V Sbjct: 264 ELETAF-SLFQNYNRTFALIMTDLDYFKAINDRYGHQVGDTVLQSIATLLKESSRSADVV 322 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---ITISAGIAERCH 229 GR GGEEF + A LA LR I+S H +T S G+AE Sbjct: 323 GRWGGEEFMIICRDADSNGAFHLAEKLR-------TEIASYARKHEYSLTASFGVAEPQT 375 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ + ++ D+ALY AK++GRN+ V SD Sbjct: 376 QQSLPQLLQSVDEALYAAKRAGRNQTVKASD 406 >gi|295397435|ref|ZP_06807522.1| GGDEF domain protein [Aerococcus viridans ATCC 11563] gi|294974336|gb|EFG50076.1| GGDEF domain protein [Aerococcus viridans ATCC 11563] Length = 353 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 9/173 (5%) Query: 93 LFISYNRISQLSRI------DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIN 143 +++SY + L ++ D L+ L N + + N+ S++ DID FK++N Sbjct: 172 IYVSYQFTNDLDKLYQSSVHDSLTALYNARKLEEDLRKISENNDSYSLLVLDIDNFKKLN 231 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGDK + + L + R GGEEF + + Q+ LA + + I Sbjct: 232 DTYGHLVGDKALEEIGTVLNNLKSDLFDCYRYGGEEFVSLVFDCTGQKTLDLAESIHERI 291 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G + IT+S G+A R E + + + RADQALY AK G+N++V Sbjct: 292 AEMPLFSEEGEPLKITVSIGVAHRNPHEDMKSTLLRADQALYQAKHRGKNQMV 344 >gi|269960938|ref|ZP_06175308.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834378|gb|EEZ88467.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 626 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 87/176 (49%), Gaps = 23/176 (13%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGHP 149 ++ LS D L+ L N F L Y + + FDID+FK+IND GH Sbjct: 460 KLRNLSEKDGLTSLWNRRKFEEQLAQYANMVERYPDTPTTCLALFDIDHFKRINDEMGHD 519 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKVI +++ L FV R+GGEEFA ++ QEA ++ N LR +E +N Sbjct: 520 EGDKVICGVANTLSNGVRNTDFVARVGGEEFAVIMPHTTTQEAEVVLNRLRVAVE---LN 576 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VC--FSDI 261 ++ + S +R T Y+ AD ALY +K +GRNRV +C F DI Sbjct: 577 SEKAVTVSVGYSDLTGDR-------TRSYKCADIALYESKSAGRNRVSICHSFDDI 625 >gi|261250126|ref|ZP_05942702.1| GGDEF domain protein [Vibrio orientalis CIP 102891] gi|260939242|gb|EEX95228.1| GGDEF domain protein [Vibrio orientalis CIP 102891] Length = 474 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 15/171 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +++ +L+ D L+G N +F IS+ + L+++ DID+FKQ+ND +GH Sbjct: 305 HKLRELAATDALTGAFNRRSFYEQTERAISTCSRWKAPLTVILLDIDHFKQVNDQYGHAA 364 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-- 208 GD+V+ L + VGRLGGEEF + +A LR+ +E +I Sbjct: 365 GDEVLIALVKHIQQSTRNMDVVGRLGGEEFGLVLPNTDSVLGFEIAERLRQEVEAMEIYY 424 Query: 209 NISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256 +I ++ IT+S G+A H + P ++ R D LY AK GRN +V Sbjct: 425 DIQ---ALKITVSLGMATLPHTQLSTPFDEVLARVDSYLYEAKHQGRNCIV 472 >gi|229526647|ref|ZP_04416051.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229336805|gb|EEO01823.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] Length = 326 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 92/183 (50%), Gaps = 15/183 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 +++ +Y I S D L+GLLN H+ I+ + KL I DID+FK I Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSIEEHHKLWIAMLDIDHFKAI 191 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+FGH +GD+++ + Q+ FG + R GGEEF +E + + R+ Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 QI + P I ++ SAG + + TI+ AD+ALY AK+ GRN+V C+ + Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYEQL 306 Query: 262 ENN 264 N Sbjct: 307 CEN 309 >gi|190893956|ref|YP_001980498.1| sensory box GGDEF family protein [Rhizobium etli CIAT 652] gi|190699235|gb|ACE93320.1| putative sensory box GGDEF family protein [Rhizobium etli CIAT 652] Length = 539 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 10/164 (6%) Query: 104 SRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ D L+GL N SA ++ + +S+V FD+D+FK+IND GH GD V+ Sbjct: 351 AQTDLLTGLYNRRGFEVAASALLTQAEHGSRWISVVLFDLDHFKKINDLNGHDAGDAVLR 410 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ F + + R GGEEF A S+ AA++A +R IE ++I + SG + Sbjct: 411 HVAGVARENFRSFDLLVRHGGEEFLALLPDSTPDGAAVVAERVRLAIEMAEIALPSGERL 470 Query: 217 HITISAGIAERCHK---EPISTIIYRADQALYVAKKSGRNRVVC 257 +T S G A R + ++ RAD ALY AK SGRN VV Sbjct: 471 KVTASFGCAGRANDGASRNFEDLVKRADLALYAAKASGRNCVVS 514 >gi|66043536|ref|YP_233377.1| GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63254243|gb|AAY35339.1| GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 690 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ L + EK S++ D+D+FK+IND +GH GDKV Sbjct: 528 QKALIDPLTGLPNRAAWGERLEREMARWHEEKNSLLVCILDLDHFKRINDGYGHLAGDKV 587 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ L F+ R GGEEF + L ++LR +E+ + G Sbjct: 588 LKIVANVLSKRLRADDFMARFGGEEFVMLLPATPPATGLKLLDELRAAVESCPFHF-KGE 646 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNR+ Sbjct: 647 RVTITVSIGMTAFRPSERSDTAIKRADQALYKAKENGRNRI 687 >gi|83310899|ref|YP_421163.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945740|dbj|BAE50604.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Magnetospirillum magneticum AMB-1] Length = 622 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 27/172 (15%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 QL+ D L+ N F+ S G Y LS++ D+D+FK+IND GH GD+ Sbjct: 456 QLATTDFLTDACNRRHFMQSTVAEIQRAGRYGRPLSLLMIDLDHFKRINDERGHAAGDEA 515 Query: 155 IA--------FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 + L DQ + +GR+GGEEFA A ++ A ++A LR + Sbjct: 516 LKAFVVMARDLLRDQDI--------IGRMGGEEFAIALPETALNPALVVAERLRIRLAGL 567 Query: 207 QINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRV 255 Q+ + G I ++ S G+AE C E + + RAD ALY AK GRNRV Sbjct: 568 QVPVGGGEPIILSASFGVAE-CRVGAGEGLEACLGRADAALYRAKAMGRNRV 618 >gi|229153576|ref|ZP_04281754.1| GGDEF domain protein [Bacillus cereus m1550] gi|228630180|gb|EEK86831.1| GGDEF domain protein [Bacillus cereus m1550] Length = 352 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 102/208 (49%), Gaps = 18/208 (8%) Query: 65 LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118 L++ + +V + + S++ GYI+ +L+ ELF R+ Q + ID L+GL N F Sbjct: 150 LIKEIHIVGLYLISSIITGYITFISANYVLQSNELF---QRMKQYATIDALTGLGNVRQF 206 Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 IS+ N+ ++ DID+FK +ND +GHP GD+V+ + L P Sbjct: 207 DLEMNRHISNKNMKNDSFCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDL 266 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 R GGEEFA + +R +E+ + I IT+S G++E ++ Sbjct: 267 AFRKGGEEFALLIPNKGLAYGILTGEQIRTAVESHSFQLLDETKIKITVSVGVSE--YEG 324 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259 I AD ALY +K++GRN+V S Sbjct: 325 SPEQFIQAADDALYYSKRNGRNKVSSVS 352 >gi|295699215|ref|YP_003607108.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002] gi|295438428|gb|ADG17597.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002] Length = 771 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 94/177 (53%), Gaps = 30/177 (16%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFG 147 F+ ++++QL+ D L+GL N +F+ E L S +F DID FK +ND FG Sbjct: 189 FLLESQLAQLAATDPLTGLQNRRSFVKHAEGRLETLAPGAQISAIFLDIDSFKSLNDRFG 248 Query: 148 HPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR--- 200 H VGD +V L D V ++ + V R+GGEEFA ++ DL Sbjct: 249 HAVGDLALFQVAQVLKDA-VALYDS---VSRIGGEEFAL-----------LIDEDLTGAL 293 Query: 201 KIIENSQINISS--GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ E +++I++ P H+T S G+AE E ++ RAD+AL AK++GRNRV Sbjct: 294 QLAERLRLDIAAIERPDGHLTASFGVAEHRRGESFMVLLDRADEALLRAKQTGRNRV 350 >gi|323164464|gb|EFZ50266.1| diguanylate cyclase domain protein [Shigella sonnei 53G] Length = 313 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 134 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 187 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 188 DKFKEINDTWGHNTGDEILRKVSQAFYDNVHSSDYVFRYGGDEFIIVLTEASENETLRTA 247 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 248 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 307 Query: 257 CFS 259 + Sbjct: 308 LWK 310 >gi|146305506|ref|YP_001185971.1| diguanylate cyclase [Pseudomonas mendocina ymp] gi|145573707|gb|ABP83239.1| periplasmic/7TM domain sensor diguanylate cyclase [Pseudomonas mendocina ymp] Length = 601 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 10/171 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L ++ R+S+L+ D L+GL N +A I+ NE L+++ D+D FK +ND Sbjct: 426 LELANQRLSELALQDPLTGLANRTALQQHLEQAIARSQRRNELLAVMLIDLDGFKPVNDQ 485 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD+V+A ++ +L RLGG+EF + + Q AA + ++++E Sbjct: 486 YGHGFGDQVLAEVARRLRHYLRDADLPARLGGDEF--VVICENVQTAADARDLAKRVLEG 543 Query: 206 SQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I G ++ + S GIA ++ + +I RAD A+Y AK +GRNRV Sbjct: 544 LDTPIYLEGRAVRVGASIGIALYHGEDDATALIRRADAAMYRAKATGRNRV 594 >gi|15605806|ref|NP_213183.1| hypothetical protein aq_265 [Aquifex aeolicus VF5] gi|2982975|gb|AAC06589.1| hypothetical protein aq_265 [Aquifex aeolicus VF5] Length = 338 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 101 SQLSRIDCLSGLLNHSAF------ISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDK 153 S+ ++D L+GLLN + L Y E SI DID FK+IND +GH GDK Sbjct: 174 SKALKVDPLTGLLNRRVLPYILRDVLELSLYTETPFSIAMVDIDNFKKINDTYGHLFGDK 233 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ ++ + +V R GGEEF + ++A + +RK +EN+ I G Sbjct: 234 VLKEVAKIIKKNLRRSDYVFRYGGEEFLILMPSTELKDAVRILEKIRKEVENTPI-CWQG 292 Query: 214 PSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVV 256 I +TIS G+ + K P I AD+ LY+AK++G+NRVV Sbjct: 293 KEIRVTISVGVCSDVYNGLKSP-EEYIKCADEKLYLAKRTGKNRVV 337 >gi|89074248|ref|ZP_01160738.1| hypothetical sensory box/GGDEF family protein [Photobacterium sp. SKA34] gi|89049952|gb|EAR55486.1| hypothetical sensory box/GGDEF family protein [Photobacterium sp. SKA34] Length = 339 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 15/172 (8%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148 S +++ LS D L+ L N + + L ++ +++V FDID+FK++ND +GH Sbjct: 146 SNEQLTHLSITDRLTQLYNRGHWENCLVEEFEHYQQMHQPMTLVMFDIDHFKKVNDTYGH 205 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD VI ++D + GR GGEEF G++ + LRK +E + Sbjct: 206 VAGDTVIKTMADIVRKAKRQSDIAGRYGGEEFGVILPGTTADMTSYFTERLRKKVEKENV 265 Query: 209 NISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVV 256 + G +I++TIS G+ C P + I + D ALY +K GRN+ Sbjct: 266 -VVDGKTINVTISLGV---CQLHPGITSYESWIEQTDSALYESKNKGRNQTT 313 >gi|294140989|ref|YP_003556967.1| sensory box/GGDEF family protein [Shewanella violacea DSS12] gi|293327458|dbj|BAJ02189.1| sensory box/GGDEF family protein [Shewanella violacea DSS12] Length = 306 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 12/168 (7%) Query: 100 ISQLSRIDCLSGLLNHSA---------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +++ + D L+GL N I+S G N +++ D+D+FKQ+ND GH V Sbjct: 142 LTKQASFDDLTGLFNRREGLKQGEVMHKIASRGEGN--FAVLMLDLDHFKQVNDKHGHLV 199 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + F+S L + R GGEEF GSSE A LA R + N+ + + Sbjct: 200 GDRALQFVSKILTDNSRMSDVLIRYGGEEFMIIISGSSEDGAGALAEYYRASLANNPMIL 259 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G + +T+S G++ H + + +I+ AD ALY AK+S RN V F Sbjct: 260 DDGTELRLTVSIGLSYFRH-QSLGQLIHEADTALYEAKRSNRNTVCSF 306 >gi|187477686|ref|YP_785710.1| signaling protein [Bordetella avium 197N] gi|115422272|emb|CAJ48796.1| putative signaling protein [Bordetella avium 197N] Length = 513 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 12/162 (7%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N + I++ SY+ ++I+ DID+FK++ND +GH VGD+V+ LS+ + Sbjct: 358 DALTGLANRRVYEICINTWESYHRSVAIIAIDIDHFKKVNDTYGHAVGDEVLKKLSEIMS 417 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V R+GGEEF A S A +A +R + N +ITIS G Sbjct: 418 SCARAADVVCRIGGEEFLILAPAMSRDSAKEMAERIRVQVSEYDFNTVG----NITISLG 473 Query: 224 IA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +A C K +S + AD LY AK +GRNRV ++E Sbjct: 474 VAVWPYDCSK--LSQLSKMADDMLYQAKANGRNRVETADELE 513 >gi|108761071|ref|YP_633928.1| response regulator/GGDEF domain-containing protein [Myxococcus xanthus DK 1622] gi|108464951|gb|ABF90136.1| response regulator/GGDEF domain protein [Myxococcus xanthus DK 1622] Length = 347 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 86/178 (48%), Gaps = 13/178 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 KEL + L+R D L+GL N AF L Y LS+V DID+FK+IN Sbjct: 165 KELAARREELLALTRTDALTGLSNRRAFEERLNDEFARSRRYGAPLSLVMLDIDHFKRIN 224 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+FGHP GD V+ ++ + R GGEEF A + +A + +R I Sbjct: 225 DSFGHPFGDHVLKAVAQTARARLREVDLLARYGGEEFIALLPETGPADALRVCERVRDAI 284 Query: 204 ---ENSQINISSGPS-IHITISAGIAERCHKE-PISTIIYR-ADQALYVAKKSGRNRV 255 E + S P + +T S G+A + P + + R AD +LY AK +GRNRV Sbjct: 285 AALELEHVGGSGKPQCVRLTASLGVATVPSGDLPSAEALLRAADASLYAAKGAGRNRV 342 >gi|307721789|ref|YP_003892929.1| response regulator receiver modulated diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306979882|gb|ADN09917.1| response regulator receiver modulated diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 427 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 11/165 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 I++ + D L+GL N + F +S + Y LS+ DID+FK ND +GH +G Sbjct: 264 EITKKANHDMLTGLYNRNKFEEVFEYELSQVKRYGYDLSLAIADIDHFKFFNDTYGHLIG 323 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ +++ L + + R GGEEF +S +A +L RK++E ++ Sbjct: 324 DEVLKLVANSLTSCTRSSDTLARWGGEEFVMLFSQTSFDDALVLLEKCRKLVE----GLN 379 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IT+S G+ + + +++ RAD+ALY AK +GRN+V+ Sbjct: 380 YKEYGKITLSFGVTSYKEGDTLDSMLQRADEALYEAKANGRNKVI 424 >gi|262372117|ref|ZP_06065396.1| WspR [Acinetobacter junii SH205] gi|262312142|gb|EEY93227.1| WspR [Acinetobacter junii SH205] Length = 420 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 10/164 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 LS+ D L+ + N F Y N+ +S++F DIDYFK ND +GH +GD+V Sbjct: 248 HLSQHDELTKVSNRRTFEEMFSYYYDMACKENKSMSVLFIDIDYFKNYNDFYGHQMGDQV 307 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSG 213 I+ ++ + F+ R GGEEF +S Q A +A ++ K I+ I + S Sbjct: 308 ISSIAKTIKSSIRHMDFIARYGGEEFVVLLPETSAQGAYAVATNIYKAIDRQMIPHEKSL 367 Query: 214 PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 S H+TIS GI IS +I+ AD+ALY AK+ GRN++ Sbjct: 368 VSNHVTISLGITVFNGNPKISQELLIHTADKALYRAKQLGRNQI 411 >gi|145299969|ref|YP_001142810.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142852741|gb|ABO91062.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 320 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 4/170 (2%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNF 146 + +L +S+LS D L+ L N L ++ LS++ D+D+FKQ+ND + Sbjct: 148 IHDLHCMIEEVSRLSCTDPLTELSNRRGAEQQLQAHWLQGRPLSVILCDVDHFKQVNDRY 207 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GHP GD + ++ + + R GGEEF G+ A LR+++ S Sbjct: 208 GHPAGDAALCGVARIMEEQLQEKECLARWGGEEFLLILPGADAARVVSRAEQLRQLLSAS 267 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 QIN +T+S G A + + ++ AD+ALY AK GRNRV+ Sbjct: 268 QINWHHH-HFSLTMSFGCATLTTGQSLDNLLLVADRALYQAKAQGRNRVL 316 >gi|116253890|ref|YP_769728.1| GGDEF domain-containing regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258538|emb|CAK09642.1| putative transmembrane sensory box GGDEF domain protein [Rhizobium leguminosarum bv. viciae 3841] Length = 385 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 11/171 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 S N++++L+ D L+G LN + +LGS + S++ DID+FKQ+ND GH GD Sbjct: 215 SRNQLTELAHHDPLTGALNRGGLAQHLPALGS--QPASLLIIDIDHFKQLNDRHGHAAGD 272 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ + + + + R GG+EF A S ++A +A +R + + Sbjct: 273 DILRLFASVSRGIMRSDDLLARQGGDEFLAVLKNVSREDAVAIAERIRLAFAAA---VMQ 329 Query: 213 GPSIHI--TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 P + + T+S G+A R E ++ +AD+ALY +K+ GRNRV F + Sbjct: 330 RPDLAVFPTLSVGVAARAESGEDFERLMQKADEALYRSKREGRNRVEVFGE 380 >gi|13473612|ref|NP_105180.1| hypothetical protein mll4270 [Mesorhizobium loti MAFF303099] gi|14024362|dbj|BAB50966.1| mll4270 [Mesorhizobium loti MAFF303099] Length = 403 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/162 (36%), Positives = 85/162 (52%), Gaps = 10/162 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISS-----LGSYNE--KLSIVFFDIDYFKQINDNFGHPVGD 152 ++ S D LS LLN AF LG+ + +++V D+D+FK INDNFGH GD Sbjct: 220 VTSRSETDTLSRLLNRGAFTRQAEQAVLGAMRQGVPVALVIADLDHFKSINDNFGHASGD 279 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI + L GR+GGEEFA G++ A + A R + I Sbjct: 280 RVIETFAGFLREAAAGHHVAGRIGGEEFAIILPGTNLAAARLFAEGTRSAF--GALPIGG 337 Query: 213 GPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 P+ + T S G+AE E I+ ++ RAD+ALY+AK +GR+ Sbjct: 338 LPADNRCTASFGVAELHTGETIADLMRRADEALYLAKNAGRD 379 >gi|259907284|ref|YP_002647640.1| HmsT (Hemin storage system protein) [Erwinia pyrifoliae Ep1/96] gi|224962906|emb|CAX54387.1| HmsT (Hemin storage system protein) [Erwinia pyrifoliae Ep1/96] gi|283477102|emb|CAY73002.1| Uncharacterized protein yhcK [Erwinia pyrifoliae DSM 12163] Length = 365 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 7/185 (3%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141 + ++++L+ LS +D L+GL N + L +K ++ DID+FK Sbjct: 173 TRRLVRQLYEEKETYCDLSMLDPLTGLYNRRGLKNRLADILDKHMGNHYVMLLDIDHFKA 232 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 NDN+GH +GD+ + +S + + V R GGEEF ++E A A +R+ Sbjct: 233 YNDNYGHAMGDQALTRVSVAIRDAVRSRDIVTRYGGEEFLVLLTNATESMAIKQAERIRE 292 Query: 202 IIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +I ++ + H+TIS GIA + + AD+ALY+AK GRNRV+ Sbjct: 293 FVLGLEIPHRFNNKVATHVTISVGIAP-LMADDFDKALAHADRALYLAKSRGRNRVIHLQ 351 Query: 260 DIENN 264 D N Sbjct: 352 DALNR 356 >gi|152997839|ref|YP_001342674.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150838763|gb|ABR72739.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 556 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 15/176 (8%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ LS D L+ + N AF +SS S LSI+ D+DYFKQ ND +GH G Sbjct: 382 RLESLSLTDGLTNIANRRAFDQRLLVELSSDKSSKYDLSILLIDVDYFKQYNDTYGHING 441 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D+ + ++ L + V R GGEEF ++ Q+A ++A ++++I INI Sbjct: 442 DEALQKIASSLESIINKKTDLVARYGGEEFVVILPNTNAQQAEVIAQQMKQVI--GLINI 499 Query: 211 ---SSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +S + IT+S GI R K T++ AD ALY +K GRN+ +I Sbjct: 500 EHKTSKIADAITVSIGIVTRVKNGKTDADTLMKSADIALYHSKTQGRNQATHIDNI 555 >gi|104781367|ref|YP_607865.1| diguanylate cyclase [Pseudomonas entomophila L48] gi|95110354|emb|CAK15062.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas entomophila L48] Length = 348 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143 ++L + +R + + +D L+ L N A + KL V+ D+D+FK +N Sbjct: 168 RDLRLEMDREQRKALLDPLTQLWNRGALAAFQDRERRLAEEQGLKLGTVYADLDHFKSVN 227 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD V+ + +L + R GGEEF A + +E ++A +R +I Sbjct: 228 DKHGHAEGDLVLCECARRLRAALRPDDLLVRQGGEEFVALLRVNDREELMLIAERVRLLI 287 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +SSGP + +++S G E I + RAD LY AK+ GR+RVV Sbjct: 288 GGGPVQLSSGP-LRVSVSIGCTLLSDSEEIDDALRRADSGLYAAKQGGRDRVV 339 >gi|323185999|gb|EFZ71356.1| diguanylate cyclase domain protein [Escherichia coli 1357] Length = 453 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 274 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 327 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 328 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 387 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 388 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 447 Query: 257 CFS 259 + Sbjct: 448 LWK 450 >gi|82544060|ref|YP_408007.1| hypothetical protein SBO_1567 [Shigella boydii Sb227] gi|81245471|gb|ABB66179.1| conserved hypothetical protein [Shigella boydii Sb227] gi|332095579|gb|EGJ00591.1| diguanylate cyclase domain protein [Shigella boydii 3594-74] Length = 208 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 29 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 82 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 83 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 142 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 143 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 202 Query: 257 CFS 259 + Sbjct: 203 LWK 205 >gi|212638995|ref|YP_002315515.1| signal transduction diguanylate cyclase [Anoxybacillus flavithermus WK1] gi|212560475|gb|ACJ33530.1| Signal transduction diguanylate cyclase [Anoxybacillus flavithermus WK1] Length = 363 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 17/196 (8%) Query: 78 ISLLLGYISGSILKELFISYNRISQ---LSRIDCLSGLLN----HSAFISSLGSYNEK-- 128 IS++ Y++ +I K++ S + + D L+GL N H+ ++ NE+ Sbjct: 166 ISIIATYVTSNICKDIRQSKEMLQHYKAWATTDFLTGLYNVRQFHALLRENIAKANEQQS 225 Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 L+++ FDID FK +ND++GH GD ++ L + + + F R GGEEF + L + Sbjct: 226 CLALILFDIDRFKCVNDSYGHDGGDVILRHLGELIRSLVPKNGFSFRNGGEEF-SILLPT 284 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQAL 244 E+EA A +R IE + ++HITIS GI+ EP + +AD AL Sbjct: 285 CEREAMAFAEHIRTTIEQHSFFVQQ-QTVHITISIGISVFPTLATNEP--ELFKQADIAL 341 Query: 245 YVAKKSGRNRVVCFSD 260 Y AK+ GRNR V + Sbjct: 342 YEAKQQGRNRTVVYKK 357 >gi|229916734|ref|YP_002885380.1| diguanylate cyclase [Exiguobacterium sp. AT1b] gi|229468163|gb|ACQ69935.1| diguanylate cyclase [Exiguobacterium sp. AT1b] Length = 559 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 94/196 (47%), Gaps = 13/196 (6%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126 I++ ++ LL +S SI E NR+ S D L+GL N A ++ + SY Sbjct: 364 IAVEVNRLLKTLSWSI--ERIDERNRLQHESLTDPLTGLHNQRALRRWTKERLNDVASY- 420 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 LS+ D+D+FK IND +GH GD+V+ V R GGEEF Sbjct: 421 -PLSVFLIDLDHFKSINDTYGHAFGDEVLIEAGQLFTRSVRATDLVTRYGGEEFVFVFPR 479 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 E A ++ +R ++ + G I +T S GI E + T++ AD+A+YV Sbjct: 480 MDEAAAHLVGEKIRDALKRHDFG-TEGTRITVTASIGIETIYEYEDLDTVLRHADRAMYV 538 Query: 247 -AKKSGRNRVVCFSDI 261 AK +GR+RV + D+ Sbjct: 539 GAKFNGRDRVAHYHDL 554 >gi|52840981|ref|YP_094780.1| GGDEF domain-containing protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54296770|ref|YP_123139.1| hypothetical protein lpp0809 [Legionella pneumophila str. Paris] gi|52628092|gb|AAU26833.1| GGDEF domain protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53750555|emb|CAH11957.1| hypothetical protein lpp0809 [Legionella pneumophila str. Paris] Length = 516 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N ++ + S + LS+ DID+FK+INDNFGH GDKV+ ++ Sbjct: 359 DSLTGLPNRESYDEHILDSFQRWKRSSSALSLAVCDIDHFKRINDNFGHLAGDKVLKKVA 418 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 T F+ R+GGEEF +S +EA + LRK++E+ + + +T Sbjct: 419 MIFKSSIRTVDFIARIGGEEFVFIFEQTSSKEAFGILEKLRKLVEDC-LFYYRDKKVDVT 477 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+ ++ I ++ RAD A+Y AK +G+NRV Sbjct: 478 VSFGLTTVTEEDDIESLFMRADNAMYKAKNAGKNRV 513 >gi|307294787|ref|ZP_07574629.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1] gi|306879261|gb|EFN10479.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1] Length = 354 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 9/165 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N AF +L E+ L++ F DID+FK IND GH GD+V+ F++ Sbjct: 190 DHLTGLPNRRAFEGTLREELERAHKEGQSLAVAFCDIDHFKLINDTHGHDTGDRVLKFVA 249 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINISSGPSI-H 217 L V R GGEEF G + EA + +R+ + S +N ++G + Sbjct: 250 GLLAKASNDQCHVARHGGEEFVMLFRGKTAAEACEAVDSVRQDLSTRSLVNRANGERMER 309 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ SAG+A E + AD+ALY+AK+ GRNRV ++++ Sbjct: 310 VSFSAGVANVLAYEDPRAALKAADRALYLAKEHGRNRVYLAAELD 354 >gi|254478757|ref|ZP_05092126.1| GGDEF domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035322|gb|EEB76027.1| GGDEF domain protein [Carboxydibrachium pacificum DSM 12653] Length = 553 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 10/173 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148 Y +++ S D L+ N F +L NE +S++ FD+D FKQIND +GH Sbjct: 381 KYYEVTRKSITDPLTKTYNRRYFNDALMENIMRADENNEPVSLIMFDLDNFKQINDTYGH 440 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD+V+ ++ ++ + V R GGEEFA + ++A ++A +R + + I Sbjct: 441 LIGDEVLKEVARRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRTEVSSKPI 500 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259 G I+ITI+ G+A+ K + ++ AD+ALY KS GRN++ + Sbjct: 501 KTEKG-DIYITITGGVADYPSKADSAEKLVSHADRALYAGGKSKGRNKIAIYE 552 >gi|91228484|ref|ZP_01262407.1| hypothetical protein V12G01_03335 [Vibrio alginolyticus 12G01] gi|269965509|ref|ZP_06179627.1| hypothetical protein, GGDEF [Vibrio alginolyticus 40B] gi|91187971|gb|EAS74280.1| hypothetical protein V12G01_03335 [Vibrio alginolyticus 12G01] gi|269829872|gb|EEZ84103.1| hypothetical protein, GGDEF [Vibrio alginolyticus 40B] Length = 402 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 10/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+ LS +D L+GL N A +S ++ +SI+ D+D FK IND++GH VGD Sbjct: 222 INDLSHLDALTGLYNRRAMEEIVPNLVSKAHKKSQAISIIMTDVDKFKAINDHYGHTVGD 281 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+A +S + R GG+EF L Q+A I+A +R +E ++ + S Sbjct: 282 SVMATISTIFKKHLPESACIVRFGGDEFMIVLL-EKAQQAKIVAEQIRLAVE-TETALQS 339 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +T+S GI++ + + + AD+ALY +K +GRN V F + Sbjct: 340 FKT-EVTMSFGISQLSEGQSLQEALAEADEALYSSKHTGRNLVTLFGE 386 >gi|91791807|ref|YP_561458.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91713809|gb|ABE53735.1| GGDEF domain [Shewanella denitrificans OS217] Length = 337 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 8/166 (4%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVG 151 S N + L+ +D L+ N A S ++ + I+ D+DYFK IND +GH G Sbjct: 168 SENELQTLALLDPLTQHYNRLALSKRFQSLSQTSTLPMCILLLDLDYFKVINDTYGHEAG 227 Query: 152 DKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D V+ + Q+ + G + F R+GGEEF +A LA +RK+I +++ + Sbjct: 228 DIVLKACAKQISSIAGYSDTF--RVGGEEFCVLVQAEHANQAVELAESIRKLISDTEF-L 284 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ +T+S G+A K +S ++ +AD+ LY+AK GRN+V+ Sbjct: 285 FENQNLAVTVSVGVATFEAKMTLSNLLAKADKQLYLAKDLGRNKVM 330 >gi|28900039|ref|NP_799694.1| hypothetical protein VPA0184 [Vibrio parahaemolyticus RIMD 2210633] gi|28808322|dbj|BAC61527.1| hypothetical protein, GGDEF domain [Vibrio parahaemolyticus RIMD 2210633] Length = 418 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 10/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+ LS +D L+GL N A ++ N +SIV D+D FK IND +GH GD Sbjct: 238 INDLSHLDALTGLYNRRAMEVIVPNLVNQAREKNTPISIVMTDVDDFKTINDQYGHTTGD 297 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+A ++ R GG+EF L ++E A +R+ IE ++ Sbjct: 298 SVMATIATIFKQTLPESACTVRFGGDEFMIVLLANTENAKA-YTELVRRSIERETSLLAF 356 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T+S GI+E + + + RAD+ALY +K +GRN+V F D Sbjct: 357 KN--QVTMSFGISELMPNDSLQDALTRADEALYCSKHTGRNQVTTFQD 402 >gi|88860890|ref|ZP_01135526.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Pseudoalteromonas tunicata D2] gi|88817103|gb|EAR26922.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Pseudoalteromonas tunicata D2] Length = 503 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/158 (37%), Positives = 85/158 (53%), Gaps = 12/158 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 SR D L+ + N A L S Y+ +LSI+ DID+FK +ND +GH GD+V+ Sbjct: 345 SRTDTLTQVGNRIACNEKLESNIAHSERYSTELSIILIDIDHFKNVNDKYGHLTGDQVLI 404 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L + R GGEEF + +Q+AA LA LR++ +Q++ S Sbjct: 405 QVAQLLKAHIRESDSLFRWGGEEFLIITPNTGQQQAAELAEKLRRL---TQVH-SFHDEF 460 Query: 217 HITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253 +ITIS GI H S ++ +R D+ALY AK SGRN Sbjct: 461 NITISLGITSYLHARDTSKSLFHRIDKALYQAKNSGRN 498 >gi|296388643|ref|ZP_06878118.1| hypothetical protein PaerPAb_10848 [Pseudomonas aeruginosa PAb1] Length = 525 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 103 LSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N +F+ + + + DID+FK IND+ GH GD+ + Sbjct: 360 LASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALMLDIDHFKNINDSHGHLTGDRAL 419 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++ L +GRLGGEEFAA +A +A LR +E +++ G Sbjct: 420 QRVAETLRQGLREVDLLGRLGGEEFAALLPEIGLDQALDVAERLRAGVEALRVSNPDGEP 479 Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+A R + + +++ RAD ALY AK GRNR Sbjct: 480 LRMTVSIGVALRRDAGDDLESLLVRADSALYQAKSGGRNRT 520 >gi|237731416|ref|ZP_04561897.1| diguanylate cyclase [Citrobacter sp. 30_2] gi|226906955|gb|EEH92873.1| diguanylate cyclase [Citrobacter sp. 30_2] Length = 449 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 89/168 (52%), Gaps = 16/168 (9%) Query: 107 DCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D ++ L N F ++L + ++ LSIVF DID+FK +ND +GH GD+VI LS+ Sbjct: 285 DPMTRLFNRGYFYNALSNEIKMTAPHKPLSIVFCDIDFFKSVNDTWGHLQGDRVIIKLSE 344 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG--PSIHI 218 + + V R+GGEEFA ++ A +A +RK +E + G P I I Sbjct: 345 IMQRLSRRNDIVARIGGEEFAILLPETNADAAFDIAERIRKHVEQQTQATTKGDFPRI-I 403 Query: 219 TISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 TIS GI R E ++ AD+ALY+AK GRN VV +S E Sbjct: 404 TISLGIVTSVDNRSAPEQLADC---ADRALYMAKNRGRNCVVAYSGEE 448 >gi|170079448|ref|YP_001736086.1| sensory transduction protein [Synechococcus sp. PCC 7002] gi|169887117|gb|ACB00831.1| sensory transduction system regulatory protein (diguanylate cyclase (GGDEF) domain) [Synechococcus sp. PCC 7002] Length = 473 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 11/178 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 +E+ + + +LS +D L+G+ N F +L Y L+++ DID+FK N Sbjct: 291 QEILMLNQELEELSHLDGLTGIANRRMFDLTLTKEWQRAVRYQYPLALMMIDIDFFKNYN 350 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D++GH GDK I +S + ++ P R GGEEF A +A +L K Sbjct: 351 DHYGHQKGDKCIQQVSSWVNLMARRPTDLAARYGGEEFVLLLTNVDFASAKNIAQELIKA 410 Query: 203 IENSQINISSGP-SIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I ++I P S ITIS G +A+ + + I++AD+ALY AK GRNR+V Sbjct: 411 ITKAKIPHPKSPISEFITISIGLHVAQPQPQADMGHFIFQADKALYQAKHEGRNRIVT 468 >gi|251800002|ref|YP_003014733.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. JDR-2] gi|247547628|gb|ACT04647.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. JDR-2] Length = 538 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 83/162 (51%), Gaps = 13/162 (8%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N A + +E L+++ FDID+FKQIND +GH VGD+ + + Sbjct: 363 DGLTGIFNRLHFIHLSEALLHQSAEQDEPLALLLFDIDHFKQINDAYGHDVGDRALLHVV 422 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHI 218 D + GR GGEEF A G S +EA A +R +I + +S P + + Sbjct: 423 DICRQLLRPEDVFGRYGGEEFVVAMPGLSHEEAETAAQRIRSEIAAQTIAAATSEPPLSV 482 Query: 219 TISAGIA---ERCHKE--PISTIIYRADQALYVAKKSGRNRV 255 T S G+A C + I+ ++ AD ALY AK SGRN V Sbjct: 483 TASFGVAMAGAGCKEAGGGINQLLKAADNALYEAKNSGRNTV 524 >gi|125973398|ref|YP_001037308.1| diguanylate cyclase [Clostridium thermocellum ATCC 27405] gi|256004374|ref|ZP_05429355.1| diguanylate cyclase [Clostridium thermocellum DSM 2360] gi|281417600|ref|ZP_06248620.1| diguanylate cyclase [Clostridium thermocellum JW20] gi|125713623|gb|ABN52115.1| diguanylate cyclase [Clostridium thermocellum ATCC 27405] gi|255991658|gb|EEU01759.1| diguanylate cyclase [Clostridium thermocellum DSM 2360] gi|281409002|gb|EFB39260.1| diguanylate cyclase [Clostridium thermocellum JW20] gi|316940368|gb|ADU74402.1| diguanylate cyclase [Clostridium thermocellum DSM 1313] Length = 376 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 9/174 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS------YNEK-LSIVFFDIDYFKQINDNFGHP 149 + R +L+R D L+GL N L Y++K L+++ FDID FK+ ND +GH Sbjct: 186 HQREFKLARTDKLTGLANRHMLDQKLEEEALYCEYSKKPLNVLMFDIDDFKKFNDTYGHI 245 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDK+++ D + R GGEEF ++A +A+ +R +E + Sbjct: 246 WGDKLLSLFGDIIKQSIRKTDMAFRYGGEEFMVLIRDLDLEKAKCVADRIRCQLEKQNLF 305 Query: 210 ISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 G ++ T+S GIA+ H + I ++ AD+ALY AKK G+N VV + +I Sbjct: 306 SDEGHNMGKATVSCGIAQFPTHSDDIKKVVDYADRALYYAKKIGKNIVVSYDEI 359 >gi|119776102|ref|YP_928842.1| diguanylate cyclase [Shewanella amazonensis SB2B] gi|119768602|gb|ABM01173.1| putative diguanylate cyclase (GGDEF domain protein) [Shewanella amazonensis SB2B] Length = 557 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 7/161 (4%) Query: 101 SQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 QL+ D L+G+ N AF + L S +++ DID FK IND GH VGDKV Sbjct: 395 QQLAATDPLTGIANRRAFSEQLQRLWHLDSQRRCRALIMIDIDRFKSINDTLGHEVGDKV 454 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ + GR GGEEF +SE+EA I+A +R IE+ + Sbjct: 455 LTDIARVIRYSIRNRDQCGRWGGEEFVVLLASASEEEAGIIAERIRHNIESLSFPAPAN- 513 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T S G+ I+ RAD+A+Y AK +G NRV Sbjct: 514 KLKVTASVGVCLDEGHSRHEDILRRADEAMYHAKDAGGNRV 554 >gi|255598018|ref|XP_002536908.1| conserved hypothetical protein [Ricinus communis] gi|223518148|gb|EEF25477.1| conserved hypothetical protein [Ricinus communis] Length = 175 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 84/160 (52%), Gaps = 7/160 (4%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL+N F S+L E+ ++ DID+FK++ND++GH GDKVI ++ Sbjct: 10 DGLTGLMNRKGFDSALHQCLDTGPAEETCVMIADIDFFKKVNDSYGHLFGDKVIQAVARI 69 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSGPSIHIT 219 L V G R GGEEF +S A +A ++R+ + I N++ +IT Sbjct: 70 LKTVSGNLYTAARYGGEEFVLLLPHTSMDIAHEIAENIRRQVAAITIKNNVTQRLISNIT 129 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 IS G+ E + I RADQALY +K GRN+V S Sbjct: 130 ISMGVTAYHPGESADSFITRADQALYTSKAQGRNQVTMLS 169 >gi|254225783|ref|ZP_04919388.1| GGDEF family protein [Vibrio cholerae V51] gi|254286467|ref|ZP_04961424.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|125621689|gb|EAZ50018.1| GGDEF family protein [Vibrio cholerae V51] gi|150423416|gb|EDN15360.1| GGDEF family protein [Vibrio cholerae AM-19226] Length = 512 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 84/172 (48%), Gaps = 21/172 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N F IS + LS+ D+D+FKQ+NDN+GHP Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410 Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD +V+A + V GT + R GGEEF ++QEA +R I Sbjct: 411 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +S P +T+S G+ + E + + RADQA+Y AK GRN+VV Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVVSL 512 >gi|22298701|ref|NP_681948.1| hypothetical protein tlr1158 [Thermosynechococcus elongatus BP-1] gi|22294881|dbj|BAC08710.1| tlr1158 [Thermosynechococcus elongatus BP-1] Length = 443 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 10/164 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ +D L+G N +S + +Y + L+++ FDID+FK+IND +GH GD V+ Sbjct: 278 LAWLDPLTGAFNRRFLLSRVEAYESQAATGEALLTVMIFDIDHFKRINDTYGHDQGDVVL 337 Query: 156 AFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 L+ + V + + R GGEEF + E +A +A +L ++ + + ++ Sbjct: 338 RTLAARAKQVLESCQDGILVRWGGEEFVLLFFVAYEDQAKAVAEELCSVVRSQPVELTDQ 397 Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+ +TIS G+ R ++ +S I RADQALY AK GR+R V Sbjct: 398 YSLSVTISLGVTLFRGGEQVLSDSIPRADQALYEAKHGGRDRWV 441 >gi|148547630|ref|YP_001267732.1| diguanylate cyclase [Pseudomonas putida F1] gi|148511688|gb|ABQ78548.1| diguanylate cyclase [Pseudomonas putida F1] Length = 381 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 13/193 (6%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSR-IDCLSGLLNHSAFISSLGSYNEK--- 128 ++S T SL + LK +R++ ++ D L+GL N AF + + + + Sbjct: 180 VVSATQSLSSALTTAWRLKHEMQRAHRLAMVASCTDELTGLNNRRAFFDNASAQHAQCRD 239 Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 ++++ D+D+FKQIND FGH GD+V+ + + GRLGGEEFA Sbjct: 240 AGKFMAVLMLDVDHFKQINDTFGHAAGDQVLQRIGAAISASLRDNDIAGRLGGEEFAILL 299 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243 + A +A LR +I ++N P +T S G+A + + ++ AD A Sbjct: 300 PNTPPDTAIEVAERLRALIAKLRVN-DEHP---VTASIGLAFAKAPATELGALLSSADSA 355 Query: 244 LYVAKKSGRNRVV 256 +Y++K SGRNRV Sbjct: 356 MYLSKVSGRNRVT 368 >gi|289625217|ref|ZP_06458171.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330871345|gb|EGH06054.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 425 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 22/188 (11%) Query: 85 ISGSILKELFISYNRISQLSR---------IDCLSGLLNHSA-------FISSLGSYNEK 128 + G+I + IS + ++L R D L+GL N A I + + Sbjct: 233 LEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEHTLERLIDTARISGKP 292 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 S++ DID+FK +ND +GHP GD+V+ ++ L R GGEEF SS Sbjct: 293 FSLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAARWGGEEFLILVPDSS 352 Query: 189 EQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 AA LA+ +R+ +E I N S +TIS G+A+ E +++I RA++ALY A Sbjct: 353 LDHAAELADRIREGVEGLLIPNTGS-----VTISLGVAQLSPGETAASLIQRAEKALYQA 407 Query: 248 KKSGRNRV 255 K+ GRNRV Sbjct: 408 KRRGRNRV 415 >gi|254506530|ref|ZP_05118671.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16] gi|219550403|gb|EED27387.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16] Length = 633 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 93/178 (52%), Gaps = 20/178 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN---------EKLSIVFFDIDYFKQINDNFGH 148 NR+ +LS D L+GL N F + + S + E ++ DID+FK+IND +GH Sbjct: 464 NRLRELSERDPLTGLWNRRKFDAEMSSLSLKTKRYPNSETATLALLDIDHFKRINDTYGH 523 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD I ++ L V R+GGEEFA + EA I+ N +R + I Sbjct: 524 DKGDVTIKEVARILTNHLRETDVVARIGGEEFAIIMPHTPLNEAEIVINRVR-----TAI 578 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIENNT 265 +I + S++ITIS GI E P + Y RAD ALY +K GRN+V S +E+++ Sbjct: 579 HIET--SLNITISGGITEIG---PTAGNSYKRADIALYESKTLGRNQVNILSVVESDS 631 >gi|315619588|gb|EFV00114.1| diguanylate cyclase domain protein [Escherichia coli 3431] Length = 453 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 274 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 327 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 328 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 387 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV Sbjct: 388 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVE 447 Query: 257 CFS 259 + Sbjct: 448 LWK 450 >gi|91977506|ref|YP_570165.1| response regulator PleD [Rhodopseudomonas palustris BisB5] gi|91683962|gb|ABE40264.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris BisB5] Length = 457 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 9/162 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N S L G+ + L+++ DID+FK IND++GH GD V+ + Sbjct: 295 DGLTGLHNRRYMESHLATLAEQAGARGKPLALMILDIDFFKSINDSYGHDAGDDVLREFA 354 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 ++ R GGEEF + A ++A LR+ I I G I + Sbjct: 355 TRIRKSIRGIDLACRYGGEEFVIVMPETDLHVAQMVAERLRRAIAGEPFGIEKGAKRIEV 414 Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 TIS G++ K EP+ ++ RAD ALY AK GRNRVV + Sbjct: 415 TISIGLSTLERKGEPVRDLLKRADTALYRAKHDGRNRVVAAA 456 >gi|330973628|gb|EGH73694.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 354 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 15/240 (6%) Query: 21 SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---IISIT 77 S S +I S ++ + +A L + L+P G++ V L + I S++ Sbjct: 97 SLSVAVMIILCSTLLVVYTRDYLLVA--VLAWCILSPAQGVDTDSVATLFMTLFFITSVS 154 Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134 + +L + L+ + ++ +LS D L+ +LN A + +L ++ N + Sbjct: 155 LGSVLNHTYTRTLRTVLSLEHQFRELSMTDDLTAILNRRALMQALDNHVLNNSAGYFLML 214 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID FK IND FGH GD+ + ++ L G+ F GR+GGEEF SE +A Sbjct: 215 DIDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAF-GRMGGEEFGVILPMCSEDDARD 273 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 DL + I S ++ P +T SAG+A+ S ++ AD LY AK+ G++R Sbjct: 274 YVLDLLECIRKS---LAVSP---LTCSAGLADIPAAADSSAVLKTADINLYKAKRGGKDR 327 >gi|300697085|ref|YP_003747746.1| signal transduction ggdef domain protein [Ralstonia solanacearum CFBP2957] gi|299073809|emb|CBJ53330.1| putative signal transduction ggdef domain protein [Ralstonia solanacearum CFBP2957] Length = 373 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 13/178 (7%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 F + +++ + D L+G L F + + E L ++ D+DYFK IND + Sbjct: 189 FAAEAQLADRANTDHLTGRLARQRFFELGAFAVERARHHGEPLCALYLDVDYFKSINDAW 248 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+ + LSD+L V GRLGG+EFA G + A + L+ + Sbjct: 249 GHAAGDEALVALSDELAGVLRPHDLFGRLGGDEFAVLLPGCNLAAALAVVERLKTAVAAH 308 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + P +T+S G A K+ ++ ++ AD AL AK+ GRNR VC S N Sbjct: 309 R-----HPMGRLTVSVGAAPLRPKQELAHLLADADLALIEAKRRGRNR-VCVSSGSTN 360 >gi|262044333|ref|ZP_06017399.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038392|gb|EEW39597.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 474 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 6/135 (4%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 ++ L+++ DID FK++ND GH GD V+ + Q+ + G V R+GGEEFA AA+ Sbjct: 331 DKLLTVMVLDIDGFKRVNDALGHEGGDCVLTQFAQQVRQLVGEQGMVARIGGEEFAVAAV 390 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CH---KEPISTIIYRA 240 S Q+ +LA +R +E+ + P IH+TIS G+ R H E + ++ A Sbjct: 391 VDSAQQGYLLAEKIRHGVESQPFGLGQNP-IHLTISLGLETREVGHARITELFNQLLLAA 449 Query: 241 DQALYVAKKSGRNRV 255 D + AK+SGRN++ Sbjct: 450 DDEMVKAKQSGRNQI 464 >gi|153009132|ref|YP_001370347.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] gi|151561020|gb|ABS14518.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] Length = 263 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F +L Y + ++ D+D+FK +ND +GH +GD V+ ++ Sbjct: 107 DSLTGMQNRRYFDEALKEYLVQFDRIQRPVGLMIIDLDHFKAVNDTYGHDIGDVVLQEVA 166 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V RLGGEEFA A + LAN +RK I +I++ + +T Sbjct: 167 RCLKDYTRYHDVVARLGGEEFAVLAPNMDAELMIKLANRIRKAISTLEIDLGD-EKLGVT 225 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+A +E + RAD+ LY AK GRNRV Sbjct: 226 VSIGLAIWDRRETSKDLYRRADKMLYAAKNMGRNRV 261 >gi|149375436|ref|ZP_01893206.1| hypothetical protein MDG893_16307 [Marinobacter algicola DG893] gi|149360141|gb|EDM48595.1| hypothetical protein MDG893_16307 [Marinobacter algicola DG893] Length = 397 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 9/167 (5%) Query: 96 SYNRISQLSRIDCLSGLLNH-SAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGH 148 S R+ ++ D L+GL N S F + +++ L +++ D+D+FKQIND +GH Sbjct: 219 SEQRLRIMAERDGLTGLYNRRSLFREGIRAFDNALQTQSPMAVLMMDLDHFKQINDRWGH 278 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+ + F++ L +GR+GGEEF S+E + I+ L I N+ Sbjct: 279 AAGDEALRFVARTLRKELRNDDIIGRIGGEEFTVVLRISAEDDVRIITRRLLDAIANNGR 338 Query: 209 NISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNR 254 I P ++++ S G ER ++ + ++ AD ALY AK GRNR Sbjct: 339 EIQGLP-LYLSASIGGVERANRHTTFADMMIEADAALYNAKNKGRNR 384 >gi|89093276|ref|ZP_01166226.1| serine/threonine kinase with two-component sensor domain [Oceanospirillum sp. MED92] gi|89082572|gb|EAR61794.1| serine/threonine kinase with two-component sensor domain [Oceanospirillum sp. MED92] Length = 1723 Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F + L LSIV FD+DYFK ND +GH GD Sbjct: 1548 LKKLVDSDGLTGLANRRCFDTYLARTWLRLRREQNPLSIVMFDVDYFKTFNDTYGHQSGD 1607 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + L+ + P V R GGEEF + E+ A +A + + + +I + Sbjct: 1608 DCLVMLAKTVREQIQRPADLVARYGGEEFIVVLPDTDEEGAMAVAGQICVAVASLKIPHC 1667 Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255 +S + H+TIS G+A C + ++I ADQALY AKK GRN+V Sbjct: 1668 NSVVADHVTISVGVATTCPDTQGPDSLIELADQALYEAKKQGRNQV 1713 >gi|115360197|ref|YP_777335.1| diguanylate cyclase [Burkholderia ambifaria AMMD] gi|115285485|gb|ABI91001.1| diguanylate cyclase [Burkholderia ambifaria AMMD] Length = 510 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 12/186 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 L+ I+ +++ +L+ D L+GL N F + L ++ LS++F D+D+FK Sbjct: 326 LRRRQIAESKLYRLAHTDSLTGLDNRGTFDAVLAKEAQRASRSGRPLSVLFVDVDHFKAF 385 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD V+ ++ V R GGEEF + + AA +A +R+ Sbjct: 386 NDYYGHLAGDDVLRRVAQSASRCLRRDSDHVARYGGEEFVVTLPDTDARGAATVAETIRR 445 Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I I P H+T S G A + + ++ +AD+ALY AK GRNRV SD Sbjct: 446 AIAGLDIAHGRSPYGHVTTSIGTATATGGRVNAAALLRQADEALYRAKSGGRNRV---SD 502 Query: 261 IENNTC 266 E +T Sbjct: 503 AEASTA 508 >gi|261212996|ref|ZP_05927280.1| GGDEF family protein [Vibrio sp. RC341] gi|260838061|gb|EEX64738.1| GGDEF family protein [Vibrio sp. RC341] Length = 338 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 8/174 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144 S+LKE ++ + + D LSGL N AF + +L +S++ DID+FK +ND Sbjct: 166 SLLKEQLA---KVQKDALFDSLSGLYNRRAFDGDMFTLIHAGHPVSLIMLDIDHFKILND 222 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD++I ++ +L + + R GGEEFA A S + A A +R+ IE Sbjct: 223 TYGHLFGDQIIRAIAKRLQSLCRDGVTAYRYGGEEFALIAPRKSMRIARQFAESVRRSIE 282 Query: 205 NSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + SG S+ IT S G+ E+ + + +++ RAD LY AK GRNRV+ Sbjct: 283 KLTVKDRRSGQSVGSITASFGVVEKVDGDSLESLVERADALLYDAKNLGRNRVM 336 >gi|242277738|ref|YP_002989867.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242120632|gb|ACS78328.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 262 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N + LS +D L+GL N I + SI+ D+D FK INDNFG+ V Sbjct: 85 NDLENLSSVDKLTGLANRLRLDEIFNYEIGKAQRHGNSFSILLLDLDRFKNINDNFGNDV 144 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDKV+ + L +GR GEEF A Q A +LA+ +RKII + Sbjct: 145 GDKVLQETAKLLKNNLRKTDTIGRWSGEEFLIIAPEIGHQNAMLLADKIRKIIAGNYYE- 203 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G +T S GI+ ++ ++ RAD+AL +AK +GRNRVV Sbjct: 204 SVGT---VTCSIGISSFHDEDSKESMTDRADRALDMAKDAGRNRVV 246 >gi|239616993|ref|YP_002940315.1| response regulator receiver modulated diguanylate cyclase [Kosmotoga olearia TBF 19.5.1] gi|239505824|gb|ACR79311.1| response regulator receiver modulated diguanylate cyclase [Kosmotoga olearia TBF 19.5.1] Length = 469 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 7/164 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + ID L+ L N A +S L Y E L++ D+D FK+IND +GH GD V+ Sbjct: 305 TEIDFLTSLFNRKATLSRLKEYIELAKRRMLSLTVAMLDVDDFKEINDTYGHLFGDTVLK 364 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + VGR GGEEF G EA + + N +G I Sbjct: 365 EIGKIFRNSMRKSDIVGRYGGEEFLIIFPGIKAAEAVEALERVLDELRNYDWRAVTGKPI 424 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T+SAG+AE + ++ +AD LY AK+SG++R+ + + Sbjct: 425 KVTVSAGVAEFSDDTTLRELVNKADNELYKAKRSGKDRISVYRE 468 >gi|152970190|ref|YP_001335299.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238894673|ref|YP_002919407.1| putative transport protein [Klebsiella pneumoniae NTUH-K2044] gi|330006439|ref|ZP_08305603.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] gi|150955039|gb|ABR77069.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546989|dbj|BAH63340.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328535837|gb|EGF62269.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] Length = 474 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 6/135 (4%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 ++ L+++ DID FK++ND GH GD V+ + Q+ + G V R+GGEEFA AA+ Sbjct: 331 DKLLTVMVLDIDGFKRVNDALGHEGGDCVLTQFAQQVRQLVGEQGMVARIGGEEFAVAAV 390 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CH---KEPISTIIYRA 240 S Q+ +LA +R +E+ + P IH+TIS G+ R H E + ++ A Sbjct: 391 VDSAQQGYLLAEKIRHGVESQPFGLGQNP-IHLTISLGLETREVGHARITELFNQLLLAA 449 Query: 241 DQALYVAKKSGRNRV 255 D + AK+SGRN++ Sbjct: 450 DDEMVKAKQSGRNQI 464 >gi|153837362|ref|ZP_01990029.1| ggdef family protein [Vibrio parahaemolyticus AQ3810] gi|149749277|gb|EDM60056.1| ggdef family protein [Vibrio parahaemolyticus AQ3810] Length = 440 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 95/167 (56%), Gaps = 7/167 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147 K+L ++ ++ +L+ D L+ L N I ++L S + ++++ FDID FK IND +G Sbjct: 257 KQLTLANQQLLELTLTDPLTKLYNRRHLIERLATLSSLQKNVTVMVFDIDDFKSINDKYG 316 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD+ I ++D + + + R+GGEEFA SE+EA LA + + + Sbjct: 317 HLIGDQAIVAVADTAKSLTDERITLARIGGEEFALVTASLSEKEAETLAKAICSCVYDRP 376 Query: 208 INISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRN 253 + + +G +IH+++S G A ++E I ++ ADQ +Y K +G+N Sbjct: 377 V-LLNGQAIHVSVSLGCA--YYREFKGIINLHEADQLMYCGKMNGKN 420 >gi|16129481|ref|NP_416039.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr. MG1655] gi|89108363|ref|AP_002143.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr. W3110] gi|170081189|ref|YP_001730509.1| diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B] gi|238900742|ref|YP_002926538.1| putative diguanylate cyclase [Escherichia coli BW2952] gi|256022799|ref|ZP_05436664.1| putative diguanylate cyclase [Escherichia sp. 4_1_40B] gi|301021666|ref|ZP_07185657.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1] gi|307138172|ref|ZP_07497528.1| predicted diguanylate cyclase [Escherichia coli H736] gi|331642106|ref|ZP_08343241.1| putative GGDEF domain protein [Escherichia coli H736] gi|20140964|sp|P76147|YNEF_ECOLI RecName: Full=Uncharacterized protein YneF gi|1787802|gb|AAC74595.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr. MG1655] gi|85675005|dbj|BAA15205.2| predicted diguanylate cyclase [Escherichia coli str. K12 substr. W3110] gi|169889024|gb|ACB02731.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B] gi|238862232|gb|ACR64230.1| predicted diguanylate cyclase [Escherichia coli BW2952] gi|260449357|gb|ACX39779.1| diguanylate cyclase [Escherichia coli DH1] gi|299881520|gb|EFI89731.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1] gi|315136162|dbj|BAJ43321.1| putative diguanylate cyclase [Escherichia coli DH1] gi|323942069|gb|EGB38246.1| GGDEF domain-containing protein [Escherichia coli E482] gi|331038904|gb|EGI11124.1| putative GGDEF domain protein [Escherichia coli H736] Length = 315 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 151 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 208 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 209 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 267 Query: 223 GIAE-RCH----KEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 268 GVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 >gi|325292368|ref|YP_004278232.1| sensory box/GGDEF family protein [Agrobacterium sp. H13-3] gi|325060221|gb|ADY63912.1| putative sensory box/GGDEF family protein [Agrobacterium sp. H13-3] Length = 325 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 8/178 (4%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQ 141 G L++L +R + + D L+GL N + L + + L+++ DID+FK Sbjct: 146 GIQLRDLRQERDRALKSALSDELTGLGNRRYAMDILNQMLGPNKAQALAVIIMDIDHFKA 205 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLR 200 +ND FGH GD V+ + +L G VGR+GGEEF GS A + + L Sbjct: 206 VNDRFGHACGDLVLKDFATRLSAAIGRDDLVGRIGGEEFLLVLSGSRMLSAESTMQKLLA 265 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + E S +S P + SAGIA E S ++ RAD ALY AK +GRNR V + Sbjct: 266 TLTEASP--LSDVPDFRYSCSAGIAFADPGESASDVLRRADTALYEAKNTGRNRFVVY 321 >gi|261822569|ref|YP_003260675.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] gi|261606582|gb|ACX89068.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] Length = 235 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 4/151 (2%) Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ + N A I + E+ +++ DID+FKQ+ND +GHP GD VI L ++ Sbjct: 84 DPLTSVYNRGAIIERINHALERNQAALIVLDIDHFKQVNDTYGHPTGDAVICDLVSRVQH 143 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 + T +GR+GGEEF G + +A LA+ L + +++ +S P +T S G+ Sbjct: 144 LLSTTNSIGRVGGEEFTILLEGYTLMQAVALASQLHHDL--NRMPLSVLPQQRVTASFGV 201 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + K + AD ALY AK+ GRNRV Sbjct: 202 SWAPQKTRFDALYGAADIALYKAKEKGRNRV 232 >gi|239908783|ref|YP_002955525.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239798650|dbj|BAH77639.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 825 Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 77/160 (48%), Gaps = 8/160 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N S + Y E ++ + D+DYFKQ+ND +GH GD V+ LS Sbjct: 656 DPLTGLHNRRFLDSYVHHYEEISRRTEKRVGFLMVDVDYFKQVNDKYGHLAGDAVLKELS 715 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + R GGEEF A++A +R+ +E + +G +IH T Sbjct: 716 GLVRQTVRAADLAVRFGGEEFLILLHEVRPNFTAVVAEKIRQTVEAHAFPLPNGTTIHKT 775 Query: 220 ISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +S G AE I AD ALY AK+ GRN+V+CF Sbjct: 776 VSVGFAEYPTDAASFYKAIKFADVALYKAKEGGRNKVLCF 815 >gi|26990063|ref|NP_745488.1| GGDEF domain-containing protein [Pseudomonas putida KT2440] gi|24984989|gb|AAN68952.1|AE016526_12 GGDEF domain protein [Pseudomonas putida KT2440] Length = 381 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 13/193 (6%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSR-IDCLSGLLNHSAFISSLGSYNEK--- 128 ++S T SL + LK +R++ ++ D L+GL N AF + + + + Sbjct: 180 VVSATQSLSSALTTAWRLKHEMQRAHRLAMVASCTDELTGLNNRRAFFDNASAQHVRCRD 239 Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 ++++ D+D+FKQIND FGH GD+V+ + + GRLGGEEFA Sbjct: 240 AGTFMAVLMLDVDHFKQINDTFGHAAGDQVLQRIGAAISASLRDNDIAGRLGGEEFAILL 299 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243 + A +A LR +I ++N P +T S G+A + + ++ AD A Sbjct: 300 PNTPPDTAIEVAERLRALIAKLRVN-DEHP---VTASIGLAFAKAPATELGALLSSADSA 355 Query: 244 LYVAKKSGRNRVV 256 +Y++K SGRNRV Sbjct: 356 MYLSKVSGRNRVT 368 >gi|114048339|ref|YP_738889.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113889781|gb|ABI43832.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 575 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 11/175 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146 + R +++R+D L+G+LN A F+ + + ++ FD+D+FK+IND++ Sbjct: 385 LQKRRFMRMARMDALTGVLNRGAGQDLGENLFVQA-AARGGNFCVILFDLDHFKRINDSY 443 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD + + + L R+GGEEFA ++E + +A R IE Sbjct: 444 GHGTGDWALKKVVEALKSHVRNGDVFARIGGEEFALFLPYANESKGMEVAEQCRSRIEAI 503 Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ SG IT S G++ ++ + +++RAD ALY AK +GRN V C+ D Sbjct: 504 DTHL-SGHKFTITASFGVSGMTKEDLSLDPLLHRADMALYAAKSNGRNSVFCYED 557 >gi|332185074|ref|ZP_08386823.1| diguanylate cyclase domain protein [Sphingomonas sp. S17] gi|332014798|gb|EGI56854.1| diguanylate cyclase domain protein [Sphingomonas sp. S17] Length = 953 Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 8/171 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 EL ++ ++ +L+ D L+ L N ++ + + E+ D+D+FK+IND Sbjct: 778 ELRVANEQLDRLASTDPLTNLANRRTLMAKIETIAQCAQKRGEQFVFALLDVDHFKRIND 837 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+++ ++ + V R GGEE A +++ EA + +R +I Sbjct: 838 QHGHGAGDEILVAIAAAIRSGVRAQDCVARYGGEEIAILFPRTAKSEALGIVERVRSMIA 897 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S + ++ G I +T+SAG+A I+ +I RAD+ALY AK+ GRNRV Sbjct: 898 SSPM-MAEGQPIGVTLSAGVAAWRPGRDIADMIRRADEALYRAKRGGRNRV 947 >gi|317153608|ref|YP_004121656.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316943859|gb|ADU62910.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 369 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 23/185 (12%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+R D ++G+ N F+ G +LS++ D+D+FK IND GH VGD Sbjct: 185 MCRLARTDSMTGMWNRGYFMELAGRELNRARRSGGELSLIMLDVDHFKAINDTHGHDVGD 244 Query: 153 KVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +A + +L V G + RLGGEEFA +S ++A +A + + I + + Sbjct: 245 --VALM--ELARVIGESVREVDVAARLGGEEFAVMLPDTSAEDACAVAVRIARTIRRAVV 300 Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV------VCFSDI 261 + GP + +T+S G+A K+ + +++ +D ALY AKK+GR+RV VC + Sbjct: 301 DSPRGP-VSMTVSMGLASFEESKDSLDSLLKYSDIALYAAKKNGRDRVETYRRSVCPRSV 359 Query: 262 ENNTC 266 C Sbjct: 360 RGVAC 364 >gi|299136568|ref|ZP_07029751.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX8] gi|298601083|gb|EFI57238.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX8] Length = 505 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 10/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+++L D L+G N AF + + + + LS++ D+D+FKQ+ND GH Sbjct: 324 GRLTELVSTDGLTGAPNRRAFDQRIDVEVRAAHRFAQPLSLLLIDVDHFKQLNDAKGHLA 383 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + ++ L F+ R GGEEF + AA +A+ L I N + Sbjct: 384 GDDCLVQIAQALHRALPRATDFLARYGGEEFVVLLPATDGFGAATVAHTLHSAISNLHLE 443 Query: 210 ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254 S PS +T+S GI+ P T +I+ ADQALY AK GRNR Sbjct: 444 HPSSPSGVVTVSIGISTYDGSVPPDTLELIHTADQALYRAKSLGRNR 490 >gi|254457579|ref|ZP_05071007.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207086371|gb|EDZ63655.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 588 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 79/165 (47%), Gaps = 13/165 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + LS D L+G+ N F I Y LS++ FDID+FK +ND GH VGD Sbjct: 429 LEHLSVTDALTGIGNRRYFHQKIEEEIHRAKRYQHPLSLIMFDIDFFKHVNDKHGHSVGD 488 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + + + R+GGEEF + EA +A LR IE Q Sbjct: 489 EVLIEYTKLINSLLREGDVFCRIGGEEFIIILPHALRDEAQKIAEKLRAKIEFCQ----- 543 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I IT+S G+ E E I I R D ALY AK+SGRN VV Sbjct: 544 -KVIPITMSFGVVEYIVGEEIEFIFKRVDDALYKAKESGRNIVVV 587 >gi|170741157|ref|YP_001769812.1| diguanylate cyclase [Methylobacterium sp. 4-46] gi|168195431|gb|ACA17378.1| diguanylate cyclase [Methylobacterium sp. 4-46] Length = 386 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 73/158 (46%), Gaps = 2/158 (1%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 R++ L+ D L+GL N +I+ DID+FK IND GH GD V+ Sbjct: 212 RLAHLAGTDPLTGLANRRGLSQLAHGRARPAAILLADIDHFKAINDGHGHEGGDAVLVEF 271 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + +L R GGEEF G+ A LA +R E + P I + Sbjct: 272 ARRLRGSLRARDIAARWGGEEFLVVLHGADPAMAEALAERVRAATEAHPFRVGQDP-IRV 330 Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+A R + I + RAD ALY AK GRNRV Sbjct: 331 TVSIGVAILREDEHGIEPALQRADAALYAAKSDGRNRV 368 >gi|95929313|ref|ZP_01312057.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95134811|gb|EAT16466.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 398 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 102/217 (47%), Gaps = 23/217 (10%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 + L I LS V + + +L G + IL L + R L+ D L+GL + A Sbjct: 185 LWALLLICTAQLSDVQARVPVVVLHGLL---ILIVLVSVFERSYTLAFRDELTGLPSRRA 241 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLG 176 F+ + + S+ DID+FK++ND GH VGD+V+ ++ +L V G F R G Sbjct: 242 FLDFVNRRSSGYSLAIVDIDHFKKVNDTHGHDVGDQVLKRVAGRLAAVSNGGKAF--RYG 299 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-----------------PSIHIT 219 GEEF + + LR+ I ++ + PS+ +T Sbjct: 300 GEEFVVLFYRRDVERVNDALDLLRQSIADTPFVLRQKPRPEKRPRRVVATKDRQPSLRVT 359 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G++ + +I RADQALY AKK+GRNRVV Sbjct: 360 VSIGVSHWHKGADLDGVIKRADQALYKAKKTGRNRVV 396 >gi|332531216|ref|ZP_08407129.1| GGDEF family regulator [Hylemonella gracilis ATCC 19624] gi|332039323|gb|EGI75736.1| GGDEF family regulator [Hylemonella gracilis ATCC 19624] Length = 310 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 9/161 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 QL+ D L+GL N + LG+ + L++ D+D+FKQ+ND +GH VGDKV Sbjct: 139 QLAITDPLTGLFNRRHVFARLGALFHQARDLRYPLTLAVIDLDHFKQVNDRYGHSVGDKV 198 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + + VGR+GGEEF ++ Q A + LR+ + S + + + P Sbjct: 199 LVHFAQKFEARRRPLDLVGRIGGEEFLMVLPNTTVQGARQVLARLREDLTQS-LPVPAHP 257 Query: 215 SIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNR 254 + ++ S+G+A+ ++ + +Y RAD+ALY AK GR R Sbjct: 258 DLALSFSSGLAQMNAQDTEAATLYQRADRALYGAKHEGRAR 298 >gi|327484743|gb|AEA79150.1| GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 473 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N F IS + LS+ D+D+FKQ+NDN+GHP Sbjct: 312 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 371 Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD +V+A + V GT + R GGEEF ++QEA +R I Sbjct: 372 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 427 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S P +T+S G+ + E + + RADQA+Y AK GRN+VV Sbjct: 428 ----ASQP--QVTVSVGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 471 >gi|256393116|ref|YP_003114680.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928] gi|256359342|gb|ACU72839.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928] Length = 349 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 80/162 (49%), Gaps = 12/162 (7%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+R D L+GL+NH F +LG +S++ DID FK +ND +GHP GD V+ Sbjct: 168 LARADPLTGLVNHRGFEEALGRAQVRHSRDGRPVSLLAIDIDRFKDVNDTWGHPAGDAVL 227 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L+ L F + + R+GGEEFA EA A L + + Sbjct: 228 QELAKLLAAYFRSGDVIARVGGEEFAVLISDCGVHEALRRAQGLLGRVREDSLTWDH--- 284 Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 IT+S G+A + E + AD+ALY AKK+GR+ VV Sbjct: 285 -RITVSIGVATVPDQVEDFDGLHRSADRALYRAKKAGRDGVV 325 >gi|163749575|ref|ZP_02156822.1| GGDEF family protein [Shewanella benthica KT99] gi|161330685|gb|EDQ01622.1| GGDEF family protein [Shewanella benthica KT99] Length = 594 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 94/176 (53%), Gaps = 11/176 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSIVFFDIDYFKQIND 144 + + + QL++ D L+G+ N +FI + S E S++ FD+D+FK+IND Sbjct: 403 MTVQKRKYKQLAQYDALTGIFNRGTAQNIAEYSFIKT-ASKREMFSVIMFDLDHFKRIND 461 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH GD ++ +++ + + R G EEFA + E +A I+A + R +I+ Sbjct: 462 NYGHGTGDWILKKVAEVINKASRSDDVFARFGSEEFALFLPNTDEAKAKIMAEEYRGLIQ 521 Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 + + SG + IT S G++ + + +++RAD A+Y +K+ GRN V + Sbjct: 522 SIETRF-SGHNFAITASFGVSTSSEDDLSLDPLLHRADIAMYHSKEQGRNCVTLYK 576 >gi|269963645|ref|ZP_06177968.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831658|gb|EEZ85794.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 480 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 93/171 (54%), Gaps = 9/171 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFG 147 ++L ++ ++ +L+ D L+ L N I ++L + L+++ FDID FK IND FG Sbjct: 297 RQLTLANQQLFELTLTDPLTKLYNRRHLIERLATLSTVKRDLTVMVFDIDDFKSINDQFG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+ I +++ + + + R+GGEEFA ++ S +EA LA ++ + Sbjct: 357 HLAGDQAIVAVANAAKSITDEKVTLARIGGEEFALVSVSLSAEEAQTLACEICTHVNQMP 416 Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I + G +IH++IS G A + + P + ADQ +Y K SG+NR V Sbjct: 417 IPL-DGQNIHVSISLGCAYYPKFDETP---SLQDADQLMYRGKASGKNRAV 463 >gi|291615259|ref|YP_003525416.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans lithotrophicus ES-1] gi|291585371|gb|ADE13029.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans lithotrophicus ES-1] Length = 671 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + ++ID L+ L N F I Y + L+++ D+D+FK IND +GH VGD Sbjct: 504 LERRAQIDALTSLNNRRHFYELAEQEILRTKRYGKPLALMMLDVDHFKDINDTYGHHVGD 563 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L + +GRLGGEEFA ++ +A A LR + + + Sbjct: 564 TVLQTLGAVCLQTMREIDIIGRLGGEEFAILLPEATAAQAFDAAERLRLAVAAIAMPLEQ 623 Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 G ++ TIS G+ K+ I+ ++ RAD+A+Y AK+SGRNRV Sbjct: 624 GQTLSFTISIGVTGLVAKDSDIADMLKRADEAMYQAKRSGRNRV 667 >gi|163847512|ref|YP_001635556.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222525361|ref|YP_002569832.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] gi|163668801|gb|ABY35167.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222449240|gb|ACM53506.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] Length = 940 Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NHS ++ + L++ DID+FKQ+ND +GH VGD+V+ L+ Sbjct: 384 DGLTGLFNHSVTQDLLMREVARARRNAQPLAVALLDIDHFKQVNDRYGHQVGDRVLKSLA 443 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L +GR GGEEF + AA++ + LR+ + + + G + +T Sbjct: 444 RLLRQRLRATDVIGRYGGEEFLIVMPDTRAGSAAMVIDSLRERFAHIE-HQREGEPLRVT 502 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SAG+AE +I +AD ALY AK +GRN+VV Sbjct: 503 FSAGVAEWHMGLDAGALIEKADAALYQAKHNGRNQVV 539 >gi|257481810|ref|ZP_05635851.1| diguanylate cyclase, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330986814|gb|EGH84917.1| diguanylate cyclase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009445|gb|EGH89501.1| diguanylate cyclase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 686 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ L +EK S++ D+D+FK+IND +GH GDKV Sbjct: 524 QKALIDPLTGLPNRAAWGERLEQEMTRWQHEKNSLLVCILDLDHFKRINDGYGHLAGDKV 583 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ + F+ R GGEEF + L ++LR +E+ + G Sbjct: 584 LKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGTGLTLLDELRAAVESCPFHFK-GE 642 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNRV Sbjct: 643 RVTITVSIGVTAFRTAERSDTAIKRADQALYKAKENGRNRV 683 >gi|242278405|ref|YP_002990534.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242121299|gb|ACS78995.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 394 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 21/188 (11%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133 +LG + +L +++ + +++ D L+GL N F S + YN L I Sbjct: 208 MLGRTLDDMRTKLDKNFSLMREMAVTDELTGLPNRRGFHSEVEKLLWLSDRYNHPLIIAL 267 Query: 134 FDIDYFKQINDNFGHPVGDKVIA----FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 FDIDYFK IND+FGH VGD+V+ F+S + + T +F R+GGEEF +S Sbjct: 268 FDIDYFKTINDSFGHAVGDEVLKNFAEFISGR---IRKTDLF-ARVGGEEFVLVMPETSR 323 Query: 190 QEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAK 248 + L + LR ++++ P + +T+S G + + + ++ AD+ALY AK Sbjct: 324 DDGHKLLDLLR-----HEVSVHEFPHGNTVTVSVGYTDNSGSDTLEELMDIADKALYKAK 378 Query: 249 KSGRNRVV 256 + GR+R++ Sbjct: 379 QDGRDRII 386 >gi|206890901|ref|YP_002248537.1| diguanylate cyclase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742839|gb|ACI21896.1| diguanylate cyclase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 252 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/215 (31%), Positives = 111/215 (51%), Gaps = 12/215 (5%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF-ISYNRISQLSRID 107 F+F IG + E+IL +L+ I S+T++LL I ++++ S+ ++ D Sbjct: 31 FIFIIG--GYEKKEFILAISLA-GISSLTVNLLSAKIMKRKMEKIIHYSFEKVETQLYFD 87 Query: 108 CLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+ + N + I+ L + + LS+ DID FK INDN+GH GD+V+ ++ Sbjct: 88 ELTSVYNRTTGINRLMEEMARSKRHKQHLSVAMLDIDNFKSINDNYGHLAGDRVLNHIAL 147 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 Q+ + V R GGEEF + E +A + +R+ I + I +G ++IT+ Sbjct: 148 QIKNLLRASDVVSRYGGEEFLIILPETDEIKAFMALERVRENIARRPVKIGNG-KLNITV 206 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S GI E + + I RAD AL AK+ G+NR+ Sbjct: 207 SIGITEVDINDSSTDAIQRADLALLKAKRDGKNRI 241 >gi|183179475|ref|ZP_02957686.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|183012886|gb|EDT88186.1| GGDEF family protein [Vibrio cholerae MZO-3] Length = 512 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N F IS + LS+ D+D+FKQ+NDN+GHP Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410 Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD +V+A + V GT + R GGEEF ++QEA +R I Sbjct: 411 GDLVLQRVVALCQHHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S P +T+S G+ + E + + RADQA+Y AK GRN+VV Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510 >gi|167646710|ref|YP_001684373.1| diguanylate cyclase [Caulobacter sp. K31] gi|167349140|gb|ABZ71875.1| diguanylate cyclase [Caulobacter sp. K31] Length = 352 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 21/175 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ + + D L+ L N AF L + + DID+FK ND +GH Sbjct: 173 EQVRRDATTDGLTNLANRKAFDDELDRACSEADEAGTTICLAVLDIDHFKGFNDTWGHQT 232 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI-------- 202 GD+VI +++ + V P F R GGEEF A+ + A+I+A L +I Sbjct: 233 GDQVIRYVASVIGRVAAPPRFAARYGGEEF---AMIFPRESASIVAGTLEEIRVEVSSRM 289 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ N G ITIS+G AER E +++ RAD ALY +K+ GRNRV Sbjct: 290 LKRRSTNEDLGA---ITISSGFAERRPGETGHSVMERADAALYTSKRGGRNRVTA 341 >gi|111223426|ref|YP_714220.1| putative two component sensor serine/threonine kinase [Frankia alni ACN14a] gi|111150958|emb|CAJ62664.1| Putative two component sensor serine/threonine kinase [Frankia alni ACN14a] Length = 1826 Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 16/185 (8%) Query: 85 ISGSILKELFISYN------RISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSI 131 I+ +I+ ++ I Y ++ +L+ D L+GL + F+ ++ + + Sbjct: 1639 IAQTIIDQVVIGYQNAWLFEKVQRLAATDQLTGLASRRHFLERADHLYAAQAAAGRPVCA 1698 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID+FK++ND +GH VGD+V+ ++ ++ F +GR+GGEEFA G Sbjct: 1699 AMVDIDHFKRVNDAYGHLVGDEVLTEVARRIRRAFRDDDLIGRIGGEEFAVLMSGPV-TT 1757 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250 A L LR + I+ S+GP + I +S G+ R + + ++ RAD ALY AK Sbjct: 1758 AESLGQRLRNALARDPIDTSAGP-LDIRLSVGLTARSPADGSLRDLLARADAALYEAKHG 1816 Query: 251 GRNRV 255 GR+RV Sbjct: 1817 GRDRV 1821 >gi|13470925|ref|NP_102494.1| hypothetical protein mlr0754 [Mesorhizobium loti MAFF303099] gi|14021668|dbj|BAB48280.1| mlr0754 [Mesorhizobium loti MAFF303099] Length = 428 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 9/196 (4%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123 E LSL+++ +++ + G +S ++ + ++R + L+ D L+GLLN A G Sbjct: 231 AEELSLIVVIASMTGI-GALSLALNQGRLARHHRRNALT--DPLTGLLNRRALFDMHGHV 287 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 ++V FD+D FK IND FGH GD+V+ + +L R+GGEEFA Sbjct: 288 PVGAFTAVVVFDLDNFKAINDEFGHAAGDEVLKVFARELAGNLRQTDIAARMGGEEFALV 347 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRAD 241 + + A +R I +G S+ T+SAG A KE +S ++ AD Sbjct: 348 LKRTLPETVEDAAERIRTAFATRLIETETG-SLRCTVSAGFAF-GSKEGLSFDKVLSAAD 405 Query: 242 QALYVAKKSGRNRVVC 257 +ALY AK+ GRNRV Sbjct: 406 KALYDAKRGGRNRVTA 421 >gi|148548848|ref|YP_001268950.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida F1] gi|148512906|gb|ABQ79766.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida F1] Length = 796 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 14/206 (6%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P GL ++ E + + +L GY++ + +L + LS D L+G+ N Sbjct: 593 PRAGLRWVRGEA-TPEVGEQGCTLWHGYLTD--ISDLKGVEEELRALSVTDSLTGIHNRR 649 Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F L E+ L+++ DID+FK+IND FGH VGD+V+ L ++ Sbjct: 650 YFQERLKIELERAQRDGLPLAVIMLDIDHFKRINDRFGHAVGDRVLRSLCQRIAQRLRRT 709 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 RLGGEEF GS +A +LA +L + + N + +T S G+A Sbjct: 710 DVFCRLGGEEFMVLCPGSDADQARLLALELWQGVRNVPVEGVG----QVTASFGVAGWRS 765 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 E ++ RAD +Y AK++GR+RV Sbjct: 766 GEGADALLLRADAGVYAAKQAGRDRV 791 >gi|313497514|gb|ADR58880.1| Diguanylate cyclase [Pseudomonas putida BIRD-1] Length = 357 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 16/188 (8%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 L LG++ + +L R+S LS D L+GL NH A+ + I Sbjct: 159 PLALGWVCYQLAIKLGDHKRRLSALSLTDSLTGLFNHGAWKDLLQLKFQACKQQQGHAVI 218 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID+FK IND FGH VGD V+ LS +L GR GG+EF +SE + Sbjct: 219 ALIDIDHFKTINDTFGHVVGDCVLRQLSAELRRSLREGDQAGRYGGDEFCVILPETSEAQ 278 Query: 192 AAILANDLRKII---ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 A LR+ + N Q+ P + I++S G++ + E + +AD+ALY+A Sbjct: 279 ACQAMERLRERVSSYRNPQL-----PHLRISLSIGLSPFEANLESPEHWLEQADKALYIA 333 Query: 248 KKSGRNRV 255 K +GR++V Sbjct: 334 KHAGRDQV 341 >gi|323529489|ref|YP_004231641.1| diguanylate cyclase [Burkholderia sp. CCGE1001] gi|323386491|gb|ADX58581.1| diguanylate cyclase [Burkholderia sp. CCGE1001] Length = 371 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 87/175 (49%), Gaps = 21/175 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QL D L+GL N F L Y+ L+ +F D+D FK+IND +GH Sbjct: 188 ERLKQLGMTDPLTGLSNRRYFDERLREELMRAARYSVPLACLFIDVDSFKRINDTYGHQT 247 Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD+ +A ++ Q V + T V R GGEEF AA L +A +A +R +E Sbjct: 248 GDRALAAVAACVRQQVRLGDT---VARYGGEEF-AALLQGDRADAQTVAERVRAAVEKLA 303 Query: 208 INISSGPSIHITISAGIAERC-HKEPISTI------IYRADQALYVAKKSGRNRV 255 + G I +T+S G+A R P + + AD+A+Y AK +GRNRV Sbjct: 304 LLDDDGERIALTVSIGVAARTVSGSPADALALGRAMMDEADRAMYQAKHNGRNRV 358 >gi|222834177|gb|EEE72654.1| predicted protein [Populus trichocarpa] Length = 308 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ LLN AF + + +S++ DID+FK+IND++GH GD+V+ ++ Sbjct: 143 DSLTNLLNRRAFQEAAELRLADPHMAPISVLIGDIDHFKRINDSWGHDCGDRVLQAVAQT 202 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L V R GGEEF + ++ QEA +A +R + +++G +TIS Sbjct: 203 LQQHVRNDDLVCRFGGEEFVLLLMRTTPQEAERVAQRIRAQLSADGYVLAAGQ--RVTIS 260 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 GIA ++ + RAD LY AK++GR+RV +D Sbjct: 261 FGIAPVAANTALTDALTRADGLLYAAKQAGRDRVHVATD 299 >gi|298485208|ref|ZP_07003301.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160196|gb|EFI01224.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 686 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ L +EK S++ D+D+FK+IND +GH GDKV Sbjct: 524 QKALIDPLTGLPNRAAWGERLEQEMSKWQHEKNSLLVCILDLDHFKRINDGYGHLAGDKV 583 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ + F+ R GGEEF + L ++LR +E+ + G Sbjct: 584 LKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGTGLTLLDELRTAVESCPFHFK-GE 642 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNRV Sbjct: 643 RVTITVSIGVTAFRTAERSDTAIKRADQALYKAKENGRNRV 683 >gi|293603220|ref|ZP_06685653.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553] gi|292818451|gb|EFF77499.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553] Length = 266 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 7/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152 + + S D L+GLLN A + + E+ S + D+D+FK +ND +GH GD Sbjct: 97 LEETSSRDPLTGLLNRRALMDMIKQEVERASRSGESFIVAMLDVDHFKAVNDRYGHETGD 156 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + L+ L GR GGEEF + A + + L + I + Sbjct: 157 RALVELAGVLRQSLRGGDLCGRWGGEEFLVMLPNTQPDAAQGVMDRLVGAVRGLAIAVGE 216 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +T+S G+A+ E S + RADQALY+AK+ GR+RV Sbjct: 217 NDVLRLTVSIGMAQHQLGETFSETLSRADQALYLAKQDGRDRVA 260 >gi|261250949|ref|ZP_05943523.1| GGDEF family protein [Vibrio orientalis CIP 102891] gi|260937822|gb|EEX93810.1| GGDEF family protein [Vibrio orientalis CIP 102891] Length = 338 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 5/172 (2%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 +++L + Q + D L+ L N AF +++L +K+ ++ DID+FK ND + Sbjct: 165 IQQLKSQLAEVQQDALFDSLTSLYNRRAFDGDLNTLCRSEQKMCLILADIDHFKSFNDTY 224 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD VI ++ ++ + + R GGEEFA S + A A LR+ IE Sbjct: 225 GHLFGDTVIKAIARRIQLSCRDGIHAYRFGGEEFALIVPNKSLRIARQYAESLRRAIEKL 284 Query: 207 QIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +S +ITIS G+AE E +++I RAD+ LY AK+ GRNRV+ Sbjct: 285 SIKDRRTSEQIGNITISLGVAELQPGETANSLIERADKLLYEAKELGRNRVM 336 >gi|167622059|ref|YP_001672353.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167352081|gb|ABZ74694.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 485 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 8/165 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++ D L+G N AF + + +S++ DID+FK +ND++GH +G Sbjct: 319 KLELMASTDKLTGAANRQAFEEHFANSLTRSVLDSRPMSLLLMDIDHFKLVNDSYGHNIG 378 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D VI +S L + R GGEEF S +++ LA +R+++ + ++ Sbjct: 379 DLVIQTVSHMLKSQLKEDDLLCRWGGEEFLILLPNCSLSQSSELAERIRELVAGRLLRVN 438 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I++T+S G A+ E +I R D ALY AK+ GRNRVV Sbjct: 439 -GCEINVTLSCGAAQHRASETAEDLINRVDIALYQAKEQGRNRVV 482 >gi|149377630|ref|ZP_01895368.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter algicola DG893] gi|149358103|gb|EDM46587.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter algicola DG893] Length = 376 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 8/162 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ D L+GL N L + ++ S++ DID FK +NDN GH VGD+ I Sbjct: 211 AKHDALTGLANRREAHEQLETEYQRYLRNSRVFSVLLMDIDLFKSVNDNHGHQVGDETIV 270 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L + R GGEE+ + EA AN +R+ I ++ I G SI Sbjct: 271 MVARTLQEHSRKVDTLARWGGEEYLVLLPETDTFEAVQTANRIRQTIASTPIETQGG-SI 329 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + TIS G+A E + ++ RAD+ALY AK GRN V F Sbjct: 330 NATISVGVATIQGAESVDRLLQRADEALYRAKTLGRNMVCDF 371 >gi|37679687|ref|NP_934296.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|37198432|dbj|BAC94267.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 398 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + ++S D L+G N A ISS + L + DID+FK +ND +GH GD Sbjct: 234 LQEMSLKDNLTGFFNRHGLEQKLPALISSAQHRQQPLIAMMCDIDHFKLVNDTYGHQEGD 293 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ ++ + R GGEEF A LA +R IE SQ Sbjct: 294 IILQRCAEAIRAQLPQQHLAFRYGGEEFLIILSQYELVRAKQLAEAIRMTIEQSQF--VQ 351 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P H+T+S G+ E + + +++ RADQALY+AK GRN+VV Sbjct: 352 LPERHLTMSFGLTELSTLDNVESMVKRADQALYLAKSQGRNQVV 395 >gi|254226957|ref|ZP_04920522.1| GGDEF family protein [Vibrio cholerae V51] gi|125620525|gb|EAZ48894.1| GGDEF family protein [Vibrio cholerae V51] Length = 469 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND FG Sbjct: 297 QQLEEANQKLSYLAKTDSLTDIANRRSFFEYLEAEQTRSGSLTLMVFDIDDFKTINDRFG 356 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 357 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 416 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +++ S+ +TIS G A P S ++ AD +Y K++G+N+VV Sbjct: 417 WVVNAQHSLSLTISLGCAFYLRPARPFS--LHDADSLMYEGKRNGKNQVV 464 >gi|85711554|ref|ZP_01042612.1| serine/threonine kinase with two-component sensor domain [Idiomarina baltica OS145] gi|85694706|gb|EAQ32646.1| serine/threonine kinase with two-component sensor domain [Idiomarina baltica OS145] Length = 1632 Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 9/165 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 ++ L+ D L+ L N F+S L ++ + ++V DID FK IND +GH G Sbjct: 1464 QLQHLANTDALTQLPNRRFFMSELQQSHDLFKRKGHQAAVVMMDIDSFKVINDRYGHSAG 1523 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ L+ Q R+GGEEFA + + +A LR+ IE I + Sbjct: 1524 DEVLKALAKQFNHAVRMNDIAARIGGEEFALLIRDADMPQVLAIAERLRQAIELDSI-VH 1582 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 SG + T+S GI+ + +I+ RAD+ALY AK G+NRV Sbjct: 1583 SGEEVDYTVSIGISLFETQDDEFESILNRADRALYRAKSLGKNRV 1627 >gi|323948341|gb|EGB44328.1| diguanylate cyclase domain-containing protein [Escherichia coli H120] Length = 564 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQLLADRRLYLA 550 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 551 KQAGRNR-VCASD 562 >gi|304406093|ref|ZP_07387750.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] gi|304344677|gb|EFM10514.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] Length = 586 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 36/203 (17%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIN 143 +EL + ++ Q++ D L+G N + + S KL+ I+ FDID FK++N Sbjct: 374 EELSTANRKLEQMAVTDGLTGCFNRRYLMGKIESELPKLAEHHASFAIMLFDIDLFKKVN 433 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH GD V+ + ++ + G + R GGEEF + + AA +A +R I Sbjct: 434 DTFGHLAGDAVLVRTAQKIQELIGPHDILARYGGEEFTVFMPNVTSEHAANMAEKIRDEI 493 Query: 204 ENSQINIS--------------------SGPSIHITISAGIAERCHKEP---------IS 234 +++ IS +G + +T+S G+ +P + Sbjct: 494 ARNEVVISEQHLVGSHHKSEPMSTLALLNGKKLAVTVSMGVVVEHKLKPSKMMDPANYLR 553 Query: 235 TIIYRADQALYVAKKSGRNRVVC 257 ++ AD+ALY AK +GRN+V+C Sbjct: 554 QLLAVADEALYEAKNAGRNQVIC 576 >gi|294338710|emb|CAZ87042.1| hypothetical protein; putative membrane protein; putative GGDEF and PAS/PAC domains [Thiomonas sp. 3As] Length = 530 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++++++ D L+GL N F + ++ S++ D D+FK++ND GH VGD V Sbjct: 362 LTRMTQTDALTGLYNRRGFFERANALLQSARDQAPSLLLIDADHFKRVNDAHGHAVGDTV 421 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L++++ +GR+GGEEFA +S + A LA+ +R + + I G Sbjct: 422 LVQLANRMNAALREGDVIGRIGGEEFAVFLPATSLENAYELADRIRLSVSRHALRI-QGL 480 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+ + + + + RAD A+Y AK++GRNRV Sbjct: 481 RVPMTLSIGVTVLQLGESTLEAALGRADTAMYQAKQNGRNRV 522 >gi|240140104|ref|YP_002964581.1| putative membrane protein, diguanylate cyclase (GGDEF) domain [Methylobacterium extorquens AM1] gi|240010078|gb|ACS41304.1| putative membrane protein, diguanylate cyclase (GGDEF) domain [Methylobacterium extorquens AM1] Length = 621 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 14/182 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 +E+ + +LS D L+GL N A S L + ++ D+D+FK N Sbjct: 170 REVVQRGEELFRLSTTDVLTGLANRRAIDSVLQELWLANINSGQAFGVILIDVDFFKLYN 229 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD +A L + + + +GR GGEEFAA S ++ A ++R+ Sbjct: 230 DRYGHQRGDSCLAALGEAMRGAAEKRRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQA 289 Query: 203 IENSQINISS--GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +E QI ++ P H+T+S G A+ +P I AD ALYVAK+ GRNR Sbjct: 290 VEALQIPHAARRDPLSHVTVSIGAAFSADVAEDKP-ERAISAADDALYVAKEEGRNRARI 348 Query: 258 FS 259 F+ Sbjct: 349 FN 350 >gi|207724264|ref|YP_002254661.1| signal transduction protein ggdef domain [Ralstonia solanacearum MolK2] gi|206589480|emb|CAQ36441.1| signal transduction protein ggdef domain [Ralstonia solanacearum MolK2] Length = 347 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 12/178 (6%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 F + +++ + D L+G L F + + E L ++ D+D+FK IND + Sbjct: 163 FAAEAQLADRANTDHLTGRLARQRFFELGAFAVERARHHGEPLCALYLDVDHFKSINDAW 222 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+ + LSD+L V GRLGG+EFA G + EA + L+ + Sbjct: 223 GHAAGDEALVALSDELAGVLRPHDLFGRLGGDEFAVLLPGCNLAEALAVVERLKTAVAAH 282 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + P +T+S G A ++ ++ ++ AD AL AK+ GRNRV S N+ Sbjct: 283 R-----HPMGRLTVSVGAAPLRPRQELAHLLADADLALIEAKRRGRNRVCVSSGSAND 335 >gi|153829938|ref|ZP_01982605.1| GGDEF family protein [Vibrio cholerae 623-39] gi|148874573|gb|EDL72708.1| GGDEF family protein [Vibrio cholerae 623-39] Length = 512 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N F IS + LS+ D+D+FKQ+NDN+GHP Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410 Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD +V+A + V GT + R GGEEF ++QEA +R I Sbjct: 411 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S P +T+S G+ + E + + RADQA+Y AK GRN+VV Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510 >gi|156741149|ref|YP_001431278.1| PAS/PAC sensor-containing diguanylate cyclase [Roseiflexus castenholzii DSM 13941] gi|156232477|gb|ABU57260.1| diguanylate cyclase with PAS/PAC sensor [Roseiflexus castenholzii DSM 13941] Length = 325 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 10/163 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISS--------LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ +L+ +D L+G+ N FI S L Y ++ DID+FK IND FGH V Sbjct: 133 RLRELALLDPLTGIGNRR-FIESNTHSRLEELRRYGWPFGVILADIDHFKAINDTFGHLV 191 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ L VGR GGEEFA A S +LA LR ++E S + I Sbjct: 192 GDDVLKMVAHTLAHNVRAFDAVGRWGGEEFAIVAQNVSAGMLLVLAERLRALVEQSTLFI 251 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + ++H+TIS G A + ++ RAD LY +K++GRN Sbjct: 252 GA-RNVHVTISLGAAIAHPDDTPLGLLDRADHLLYQSKQNGRN 293 >gi|17548619|ref|NP_521959.1| putative transmembrane protein [Ralstonia solanacearum GMI1000] gi|17430867|emb|CAD17549.1| putative signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum GMI1000] Length = 488 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 21/234 (8%) Query: 35 FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94 + +F+A +I+ + + G+ LV++ ++L + Y+ L+ Sbjct: 263 YPLFVAVGTATEDIYANWKARAWWIGM---------LVVLFNVVTLAMAYLFAQHLERRI 313 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147 R ++L+ D L+GL N A L + + LS++ D+D+FK ND++G Sbjct: 314 EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYG 373 Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 HP GD + ++ + P R GGEEF GS A ++A +R+ I Sbjct: 374 HPDGDAALQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLDSANVVAETIRRAILVL 433 Query: 207 QINISSGPSIHITISAGIAE---RCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 I + S +T+S G A EP +T+ AD LY AK SGRNR + Sbjct: 434 NIPHARSASTALTVSIGAASGTPASSGEPRAATLTKAADAQLYRAKTSGRNRTM 487 >gi|237654503|ref|YP_002890817.1| response regulator receiver modulated diguanylate cyclase [Thauera sp. MZ1T] gi|237625750|gb|ACR02440.1| response regulator receiver modulated diguanylate cyclase [Thauera sp. MZ1T] Length = 634 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 11/172 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL IS R++ + D L+ L N + +++L + + LS++ DID+FK+IND Sbjct: 452 ELAISNRRLAHAAMTDLLTNLPNRRSGMNALAKAWAASSRFEQPLSVMMLDIDHFKRIND 511 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH VGD V+ ++ + + R+GGEEF + + A A LR+++E Sbjct: 512 SHGHAVGDTVLRDVAQAIQQSARKDDSMCRMGGEEFLVICPNTDLKAAVQAAERLRRMVE 571 Query: 205 NSQINISSGPS-IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNR 254 ++ I +G + I ++S G+A R ++ AD+ALY AK++GRNR Sbjct: 572 --RLRIQAGETEIQTSVSIGVATREVGMTETDALVNAADRALYRAKQAGRNR 621 >gi|221211969|ref|ZP_03584947.1| diguanylate cyclase [Burkholderia multivorans CGD1] gi|221168054|gb|EEE00523.1| diguanylate cyclase [Burkholderia multivorans CGD1] Length = 525 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 12/185 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQ 141 L++ R++ L+R D L+GL N A + L +L S++F D D FKQ Sbjct: 333 LRDNLRKQQRLTDLARTDPLTGLHNRRALDAMLVDACARLQRGDGGSLSVLFIDADRFKQ 392 Query: 142 INDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND +GH GD + FL+ + V R GGEEF A + + A +A+ +R Sbjct: 393 YNDRYGHAHGDTALRFLAACIRAHVCRRGDVAARYGGEEFVAVLPDTDARGAMQIADAIR 452 Query: 201 KIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCF 258 + +E ++++ + P T+S G A H + RAD+ALY AK GRNR VC Sbjct: 453 RDVERNRLDGFADPVPAFTVSIGCATADHARAASADALARRADRALYTAKHRGRNR-VCH 511 Query: 259 SDIEN 263 +D+E Sbjct: 512 ADVET 516 >gi|258516235|ref|YP_003192457.1| diguanylate cyclase and metal dependent phosphohydrolase [Desulfotomaculum acetoxidans DSM 771] gi|257779940|gb|ACV63834.1| diguanylate cyclase and metal dependent phosphohydrolase [Desulfotomaculum acetoxidans DSM 771] Length = 550 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 11/199 (5%) Query: 73 IISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--- 128 II + L+ +++G I E I + I +R D L+GL NH + +E+ Sbjct: 151 IIFTGVMLISAWLTGGITSIEREIREHLIDMANR-DGLTGLYNHRFLQEYFKTLSEETNN 209 Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 +S++ FDID+FK ND FGH GD+++ +S+ + P V R GG+EF Sbjct: 210 TVRNISLILFDIDHFKYFNDTFGHTAGDEILLNVSNIVKNHISYPSIVARYGGDEFCILL 269 Query: 185 LGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242 + A LA+++ + +E I N P+ I+I+AGIA H + +I ADQ Sbjct: 270 IDYDLSSAYKLASEMSEKVEQLVIKNTEKLPNGKISITAGIANYPSHTKHCEKLIDLADQ 329 Query: 243 ALYVAKKSGRNRVVCFSDI 261 ALY AKK+ +N+V + ++ Sbjct: 330 ALYKAKKTSKNKVELYFNV 348 >gi|17231091|ref|NP_487639.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132732|dbj|BAB75298.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 344 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 95/186 (51%), Gaps = 17/186 (9%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141 + K+L + + L+ +D L+GL N F + L + LS++ DIDYFK Sbjct: 160 VYKQLEAANMALQHLANVDGLTGLANRRRFDNYLNTQWINLVQEGAPLSLILCDIDYFKF 219 Query: 142 INDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 ND +GHP GD KV A LS + V R GGEEFA + + A +A+ Sbjct: 220 YNDQYGHPTGDICLQKVGAVLSYK---AQKHQDLVARYGGEEFAVVMPYTHAKGAIYVAH 276 Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 ++ + + QI + S S HIT+S G+A + S +I AD+ALY AK+SGRNR Sbjct: 277 AIQTSVRDLQIAHDKSAVSQHITLSMGVATITPTWESSPSDLIAAADKALYKAKESGRNR 336 Query: 255 VVCFSD 260 + + D Sbjct: 337 ICQWED 342 >gi|119386689|ref|YP_917744.1| response regulator receiver modulated diguanylate cyclase [Paracoccus denitrificans PD1222] gi|119377284|gb|ABL72048.1| response regulator receiver modulated diguanylate cyclase [Paracoccus denitrificans PD1222] Length = 464 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 15/170 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L + L+++ D+D+FKQ+ND GHP GD V+A ++ Sbjct: 292 DPLTGLHNRRFALPRLAELAAEAQERQGVLAVMLMDLDHFKQVNDIHGHPAGDAVLAGIA 351 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG---PSI 216 +L + R+GGEEF A + A +A +LR + + I + G + Sbjct: 352 ARLAATLPEGALLARIGGEEFLAVLPDCPARAARRVAENLRHAVMAAPIPLPQGCTAAEL 411 Query: 217 HITISAGIAE---RCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDI 261 +TIS G+A+ H P+ ++ AD+AL AK SGRNR+V S + Sbjct: 412 CVTISVGVAQGHGGPHLPPVDPEALLASADRALLNAKSSGRNRIVMASTV 461 >gi|255655190|ref|ZP_05400599.1| putative signaling protein [Clostridium difficile QCD-23m63] Length = 220 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 10/153 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ + N +F Y K ++V DID FK INDN+GH GD VI +++ + Sbjct: 73 DGLTNVYNRKSFDIMYEKYRAKDDNFALVMIDIDNFKLINDNYGHKFGDVVIKGITNTIC 132 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V+ V R GGEEF+ S +E A + +++R I N + N + +TISAG Sbjct: 133 VMLEQDDKVFRYGGEEFSVLIRNKSGEEVADIVDNIRVAIANKKWN----EDVTVTISAG 188 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +A H ++ AD+ LY AK+ GRN+VV Sbjct: 189 VA---HISDSKDVLEEADKNLYKAKQLGRNKVV 218 >gi|170742550|ref|YP_001771205.1| diguanylate cyclase [Methylobacterium sp. 4-46] gi|168196824|gb|ACA18771.1| diguanylate cyclase [Methylobacterium sp. 4-46] Length = 384 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 10/171 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDN 145 ++ KE R+S LS D L+G+ N S + + +++ FD+D+FK++ND Sbjct: 206 ALAKERLEWEQRLSALS--DPLTGVCNRRGLEVRAASLLASGRATLLLFDLDHFKRVNDT 263 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH +GD V+ + + RLGGEEF A L ++ A +A +R+ + Sbjct: 264 YGHAIGDAVLVGFCAAAQALLPPQAVLARLGGEEF--ACLLPADAAAGPIAETIRRAV-- 319 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + P + IT+S G A + ++ RAD ALY AK+ GR+RVV Sbjct: 320 AALRPDCEPGLRITVSVGAAR--GGTSLERLLARADAALYEAKRLGRDRVV 368 >gi|83859495|ref|ZP_00953016.1| Putative diguanylate cyclase (GGDEF domain) [Oceanicaulis alexandrii HTCC2633] gi|83852942|gb|EAP90795.1| Putative diguanylate cyclase (GGDEF domain) [Oceanicaulis alexandrii HTCC2633] Length = 322 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 40/248 (16%) Query: 47 NIFLFYIGLTPFYGLE--------------YILV-------ENLSLVIISITISLLLGYI 85 +IFL I L F GLE + +V + L+ + S L+ I Sbjct: 73 DIFLTAIELPDFSGLEACWRVKANPETEHIHTMVLSASGQEDKLAESLDSGADDFLVKPI 132 Query: 86 SGSILKELFISYNRISQLSR-------IDCLSGLLNHSAFISSLGSYNEK-------LSI 131 + LK + +RI +L++ D L+G N F+ +L +++ S+ Sbjct: 133 DKNELKARMRAASRIVRLTQRMRAEAETDALTGAYNRRVFMRTLEREHKRALDQALPFSV 192 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + D+D+FK+IND GH GD+V+ L + P +GRLGGEEFA G Sbjct: 193 LMVDLDFFKKINDTHGHASGDRVLIKTVKTLKALLRPPAMLGRLGGEEFAVLLPGQDADM 252 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVA 247 A A LR ++ + G I +T S G+A H + + ++ AD LY A Sbjct: 253 ALQTAESLRLALQALHVENDDGHPIPVTASMGLAT-LHAGDLESSGEKMLGEADAGLYKA 311 Query: 248 KKSGRNRV 255 K+ GRN+V Sbjct: 312 KEGGRNQV 319 >gi|330895603|gb|EGH27911.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 551 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 12/158 (7%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E S+ F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKSLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + Q A + +D+R ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHGVLDDIRHRF--AEIHYPAQPADLFC 496 Query: 219 TISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG +A H + +S + +AD ALY AK +GRNRV Sbjct: 497 TFSAGVVALGTHDDSLS-LASQADTALYCAKHAGRNRV 533 >gi|73538085|ref|YP_298452.1| GGDEF [Ralstonia eutropha JMP134] gi|72121422|gb|AAZ63608.1| GGDEF [Ralstonia eutropha JMP134] Length = 400 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 8/175 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G+++ A+ +++ +++ DID FK +ND +GH Sbjct: 215 RRLEAIANTDGLTGVMSRKAWEDMASRALAAGARGGVPPALLIIDIDRFKGVNDTYGHAA 274 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ + + +GRLGGEEFA + +A ++A +R E + I Sbjct: 275 GDAVLKGFASLAGAQVRSTDSLGRLGGEEFAVVLPATRVADAVVIAERIRAGAEQHAVRI 334 Query: 211 SS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + TIS G+A E ++ + RAD ALY AK GRNR+V D ++ Sbjct: 335 GEHGTIVRYTISGGVACLRPGETLAQLSARADAALYRAKLEGRNRIVVHEDRQST 389 >gi|308272277|emb|CBX28883.1| hypothetical protein N47_B20290 [uncultured Desulfobacterium sp.] Length = 524 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 11/180 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138 + S+ K+L + ++ +S D L+GL NH F L Y + LS++ D+DY Sbjct: 328 ADSVAKKLRAANEKLKAVSIRDGLTGLYNHVYFQKQLDIELSRTIRYRKPLSLIMLDLDY 387 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK IND +GH GD V+ +S + R GGE+F + +EAA+LA Sbjct: 388 FKVINDTYGHRTGDIVLQKISALFMNQVRISDITARYGGEKFVIILPETELKEAAVLAER 447 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255 +R +E + I S +I +TIS G+A I S ++ AD ALY +K +GRN++ Sbjct: 448 IRTSVEQNVIRTGS-TAIRVTISIGVATYLPSGNILSKSELLDAADSALYASKHNGRNKL 506 >gi|163789552|ref|ZP_02183990.1| GGDEF domain protein [Carnobacterium sp. AT7] gi|159875084|gb|EDP69150.1| GGDEF domain protein [Carnobacterium sp. AT7] Length = 366 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 106/204 (51%), Gaps = 13/204 (6%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFIS---YNRISQLSRIDCLSGLLNHSA 117 L YIL+ ++ LV+ S L+G ++ +++L S Y + +++D L+GL N A Sbjct: 161 LVYILIYSIFLVLSS-----LVGILATVFIEDLLKSRSLYLNEKEHAKMDFLTGLYNMRA 215 Query: 118 FISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 F K +++ DIDYFK IND++GH GD ++ ++ L V V Sbjct: 216 FNKKWRKIEGDQTIAKTALMMVDIDYFKWINDSYGHANGDFILRQVATILKVGAHDNELV 275 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232 R+GGEEF S E +A+++R + + + + +G I IT+S G+A + Sbjct: 276 YRVGGEEFCLILNDLSYAEQKNIADNIRSSVADKEFLLENGTRIKITVSIGLAASDQNKD 335 Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256 + + AD+ LY+AK GRN+V+ Sbjct: 336 MKKLYRLADRCLYMAKNQGRNKVM 359 >gi|157147625|ref|YP_001454944.1| hypothetical protein CKO_03428 [Citrobacter koseri ATCC BAA-895] gi|157084830|gb|ABV14508.1| hypothetical protein CKO_03428 [Citrobacter koseri ATCC BAA-895] Length = 355 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 73/278 (26%), Positives = 131/278 (47%), Gaps = 29/278 (10%) Query: 11 IWLCH---EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPF--------- 58 +W H + N + S +TF++ ++ +FI ++ F NI F P Sbjct: 81 LWAWHITLKYNAMNHSDYTFLL-IALLCVLFIGSIAFANNIIAFTFHSLPSVLACLWLNG 139 Query: 59 --YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGLLN 114 +G+ I + L + I+I + Y + ++ +L ++ LS +D L+GL N Sbjct: 140 SEHGIRIIYLMALPMAGIAIQHVIQKRYDDFAQQLMYKLLEERETLNGLSMLDPLTGLYN 199 Query: 115 HSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 + L + +E+ ++ DID+FK ND++GH +GD+ + +S + + Sbjct: 200 RRGLQNKLNTLLALETHEEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSR 259 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI----NISSGPSIHITISAGIA 225 V R GGEEF + QEA A +R+ + + +I N+S + +TIS GIA Sbjct: 260 DIVTRFGGEEFMVLLTATDPQEARTTAERIRQKVYDLKIPHMFNVSVATN--VTISVGIA 317 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 ++ + I +AD+ALY AK GRN ++ ++ Sbjct: 318 PLLGQD-MEAAIVKADKALYEAKNLGRNNILASDELRT 354 >gi|148658478|ref|YP_001278683.1| diguanylate cyclase [Roseiflexus sp. RS-1] gi|148570588|gb|ABQ92733.1| diguanylate cyclase with GAF sensor [Roseiflexus sp. RS-1] Length = 681 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 10/163 (6%) Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+G+ N F ++ ++ L+I+ D+D+FK +ND +GH GD+V+ + Sbjct: 511 IDELTGVWNRRTFFENVRREFQRSQRTLHPLAILMIDVDHFKSVNDTYGHAAGDQVLRGV 570 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +++ +GR GGEEFA A + A +A LR +E + G SI + Sbjct: 571 AERCRNQLRVIDIIGRYGGEEFAVALPETDIHAAGQIAERLRIAVERAPFVTDYG-SISL 629 Query: 219 TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259 TIS G A + ++ +I RAD+ALY+AK+SGRN V +S Sbjct: 630 TISVGAAVYHPDDHVTLDAVIDRADRALYIAKRSGRNSVRVWS 672 >gi|71735129|ref|YP_272560.1| diguanylate cyclase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555682|gb|AAZ34893.1| diguanylate cyclase, putative [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322200|gb|EFW78296.1| diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320331851|gb|EFW87789.1| diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330872977|gb|EGH07126.1| diguanylate cyclase [Pseudomonas syringae pv. glycinea str. race 4] Length = 686 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ L +EK S++ D+D+FK+IND +GH GDKV Sbjct: 524 QKALIDPLTGLPNRAAWGERLEQEMSKWQHEKNSLLVCILDLDHFKRINDGYGHLAGDKV 583 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ + F+ R GGEEF + L ++LR +E+ + G Sbjct: 584 LKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGTGLTLLDELRAAVESCPFHFK-GE 642 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNRV Sbjct: 643 RVTITVSIGVTAFRTAERSDTAIKRADQALYRAKENGRNRV 683 >gi|26987891|ref|NP_743316.1| diguanylate cyclase [Pseudomonas putida KT2440] gi|24982597|gb|AAN66780.1|AE016306_6 YaiC/YhcK/ArdA family protein [Pseudomonas putida KT2440] Length = 357 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 16/188 (8%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 L LG++ + +L R+S LS D L+GL NH A+ + I Sbjct: 159 PLALGWVCYQLAIKLGDHKRRLSALSLTDSLTGLFNHGAWKDLLQLKFQACKQQQGHAVI 218 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID+FK IND FGH VGD V+ LS +L GR GG+EF +SE + Sbjct: 219 ALIDIDHFKTINDTFGHVVGDCVLRQLSAELRRSLREGDQAGRYGGDEFCVILPETSEAQ 278 Query: 192 AAILANDLRKII---ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 A LR+ + N Q+ P + I++S G++ + E + +AD+ALY+A Sbjct: 279 ACQAMERLRERVSSYRNPQL-----PHLRISLSIGLSPFQASLESPEHWLEQADKALYIA 333 Query: 248 KKSGRNRV 255 K +GR++V Sbjct: 334 KHAGRDQV 341 >gi|291614011|ref|YP_003524168.1| diguanylate cyclase with GAF sensor [Sideroxydans lithotrophicus ES-1] gi|291584123|gb|ADE11781.1| diguanylate cyclase with GAF sensor [Sideroxydans lithotrophicus ES-1] Length = 379 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 21/186 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 SI E +++ R+ + D L+G+ N + + Y LS +F DID FK Sbjct: 174 SICLENSLNHERLKLVGLTDPLTGIYNRRYLETRCQEEAAHVRRYRSPLSCMFLDIDKFK 233 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND+FGH +GDK++ ++ Q+ + + R GGEEF + + A +A +R Sbjct: 234 RINDSFGHNIGDKILCSVTAQIKSQLRSNDVLARYGGEEFVVLLPQTGIRGACDIAERIR 293 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIST----------IIYRADQALYVAKKS 250 + + I + +TIS G+A+ P+ ++ AD+ALY+AK+S Sbjct: 294 RTVAEQAFQIGREDELKVTISIGVAQ----APVDADGDERTVAHQLLAAADEALYLAKES 349 Query: 251 GRNRVV 256 GRN+VV Sbjct: 350 GRNKVV 355 >gi|307721990|ref|YP_003893130.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306980083|gb|ADN10118.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 559 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 ++ + +S D L+ L N S + I S Y +K ++ DID+FK++ND +G Sbjct: 393 VTTQELENISTHDSLTSLYNRSEYKRILEKKIKSAQRYGDKFGLIMMDIDFFKRVNDKYG 452 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+V+ + L FV R GGEEF A + +E L L+K I + Sbjct: 453 HNVGDEVLKIFASILKEYVREDDFVARWGGEEFIIIANHAGNKELEKLTKKLQKEIAKT- 511 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S P+ + S G+ + +I R D ALY+AK++GR++ + Sbjct: 512 ---SFAPAPQLCASFGLTAYIAGDTEESIFKRVDDALYMAKQTGRDKYI 557 >gi|307131097|ref|YP_003883113.1| putative Heme-regulated two-component response regulator [Dickeya dadantii 3937] gi|306528626|gb|ADM98556.1| Putative Heme-regulated two-component response regulator [Dickeya dadantii 3937] Length = 460 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 9/160 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSI--------VFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ LLN FI ++ L+I DID+FK+INDN+GH G+ + + Sbjct: 301 DPLTNLLNRR-FIPTIMRREIALAISSGKPFILAMIDIDHFKKINDNYGHETGNLTLKTI 359 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + ++ + +V R GGEEF + + +AA++ + +R++I I ++ I + Sbjct: 360 ATKIYESVRSSDYVFRYGGEEFMVLLVETQTSQAAMIFDSIRQLIAGLYIPATAEKGISV 419 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 TIS GIAE + +I +AD ALY AK +GRNR+ F Sbjct: 420 TISVGIAEFDNHPDYQQLIKKADNALYQAKANGRNRIEIF 459 >gi|218531610|ref|YP_002422426.1| diguanylate cyclase/phosphodiesterase [Methylobacterium chloromethanicum CM4] gi|218523913|gb|ACK84498.1| diguanylate cyclase/phosphodiesterase [Methylobacterium chloromethanicum CM4] Length = 667 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 14/182 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 +E+ + +LS D L+GL N A S L + ++ D+D+FK N Sbjct: 216 REVVQRGEELFRLSTTDVLTGLANRRAIDSVLQELWLANVNSGQAFGVILIDVDFFKLYN 275 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD +A L + + + +GR GGEEFAA S ++ A ++R+ Sbjct: 276 DRYGHQRGDSCLAALGEAMRGAADKRRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQA 335 Query: 203 IENSQINISS--GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +E QI ++ P H+T+S G A+ +P I AD ALYVAK+ GRNR Sbjct: 336 VEALQIPHAARRDPLSHVTVSIGAAFSADVADDKP-ERAISAADDALYVAKEEGRNRARI 394 Query: 258 FS 259 F+ Sbjct: 395 FN 396 >gi|254227901|ref|ZP_04921331.1| ggdef domain protein [Vibrio sp. Ex25] gi|262396112|ref|YP_003287965.1| hypothetical protein VEA_000814 [Vibrio sp. Ex25] gi|151939397|gb|EDN58225.1| ggdef domain protein [Vibrio sp. Ex25] gi|262339706|gb|ACY53500.1| hypothetical protein VEA_000814 [Vibrio sp. Ex25] Length = 402 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 105/196 (53%), Gaps = 18/196 (9%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGS 124 +I++++ S+L I+G +++ I+ LS +D L+GL N A ++ Sbjct: 202 LIVAMSFSMLW-LINGRLIQS-------INDLSHLDALTGLHNRRAMEEIVPNLVNQAHK 253 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + +SI+ D+D FK IND++GH VGD V+A ++ R GG+EF Sbjct: 254 RKQSISIIMTDMDEFKAINDHYGHTVGDSVMATIAAIFKKHLPESACTVRFGGDEFMIVL 313 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 L + Q A I+A +R +E ++ ++ S + IT+S GI+E + + ++ AD+AL Sbjct: 314 LEKA-QRAKIVAEQIRLAVE-TEASLQSFEN-EITMSFGISELSEGQSLHEVVAEADEAL 370 Query: 245 YVAKKSGRNRVVCFSD 260 Y +K +GRN+V F + Sbjct: 371 YSSKHTGRNQVTLFGE 386 >gi|114568673|ref|YP_755353.1| response regulator receiver modulated diguanylate cyclase [Maricaulis maris MCS10] gi|114339135|gb|ABI64415.1| response regulator receiver modulated diguanylate cyclase [Maricaulis maris MCS10] Length = 324 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 10/164 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+G N AF+ L +++ LS+V D+D+FK +ND GH GD V Sbjct: 143 RLAETDALTGAANRRAFMQYLEIQSQRATRDDIPLSVVMIDLDHFKSVNDTHGHATGDTV 202 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + +GRLGGEEF G+ A I +R +E I+ G Sbjct: 203 LIEAVKSIQACLRDNDMLGRLGGEEFCVILPGAGLFSAGIAGERIRAAVEAMTISTDEGV 262 Query: 215 SIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRV 255 + +T S G+A + IS T++ AD ALY AK++GRN+V Sbjct: 263 PVPVTASLGVASLTDGDLISAPDTLLQTADVALYRAKETGRNKV 306 >gi|323492067|ref|ZP_08097229.1| putative sensory box/GGDEF family protein [Vibrio brasiliensis LMG 20546] gi|323313628|gb|EGA66730.1| putative sensory box/GGDEF family protein [Vibrio brasiliensis LMG 20546] Length = 325 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 13/170 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 + +L+ D L+G+LN AF L + LS + DID+FK+IND GH GD+V Sbjct: 141 LRKLADTDELTGILNRRAFTLQLEQDFNNPSGKGLSCLMIDIDHFKEINDQVGHLSGDEV 200 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I ++ ++GRLGGEEF ++ +A +A +R+ IE++ ++ Sbjct: 201 ITQVAHICRDTIRGSDYIGRLGGEEFGVVLTHTNAIQAYDIAERIRESIESTPCHVDE-- 258 Query: 215 SIHI---TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 HI T+S GIAE + ++ +AD+A+Y +K++GRN+V + D Sbjct: 259 --HIILPTVSIGIAELNSQVSSVRELMVQADKAMYYSKQTGRNQVTLYYD 306 >gi|258623475|ref|ZP_05718478.1| extracellular solute-binding protein, family 3/GGDEF domain protein [Vibrio mimicus VM573] gi|258584290|gb|EEW09036.1| extracellular solute-binding protein, family 3/GGDEF domain protein [Vibrio mimicus VM573] Length = 463 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 90/163 (55%), Gaps = 6/163 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++++ LS+ D L+G+ N F + L +++ L+++ FDID FK+IND +GH GD Sbjct: 298 HKLTLLSQTDSLTGIHNRHYFFNQLTKERDHSKSLTLMVFDIDDFKRINDTYGHGAGDSA 357 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I ++ + M R+GGEEFA G + + + +LA + + I ++ ISS Sbjct: 358 ICLITACVRSALEPDMKFARIGGEEFAILVHGKTAEASQLLAELICQRIAEKELMISSNT 417 Query: 215 SIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256 + +TIS G A + P S ++ AD +Y AK G+N+VV Sbjct: 418 FVSLTISLGCA--FYPSPTESPTLHMADSLMYEAKGKGKNQVV 458 >gi|193071313|ref|ZP_03052231.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E110019] gi|192955355|gb|EDV85840.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E110019] Length = 558 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|114562712|ref|YP_750225.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114334005|gb|ABI71387.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 278 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 13/162 (8%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N L SY++ LSI DID+FK IND +GH +GD V+ ++ Sbjct: 114 DSLTGIFNRRYLDRRLKEETQRAQSYSKPLSIFLIDIDHFKNINDKYGHQIGDLVLKNIA 173 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP----- 214 + + V R GGEEF + + LA LR IIEN Q+ + S Sbjct: 174 QNIKMSLRESDIVARYGGEEFIVILPLTQVSTSYTLAERLRTIIENIQLALPSESEIDIL 233 Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 SI +T+S G+A + + +I AD+ALY +K++GRN+V Sbjct: 234 SIGVTVSVGVAGMTSECKDYQCLIKNADRALYQSKQNGRNQV 275 >gi|289627986|ref|ZP_06460940.1| diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646454|ref|ZP_06477797.1| diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330866579|gb|EGH01288.1| diguanylate cyclase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 686 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ L +EK S++ D+D+FK+IND +GH GDKV Sbjct: 524 QKALIDPLTGLPNRAAWGERLEQEMSKWQHEKNSLLVCILDLDHFKRINDGYGHLAGDKV 583 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ + F+ R GGEEF + L ++LR +E+ + G Sbjct: 584 LKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGTGLTLLDELRTAVESCPFHFK-GE 642 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNRV Sbjct: 643 RVTITVSIGVTAFRTAERSDTAIKRADQALYKAKENGRNRV 683 >gi|322420346|ref|YP_004199569.1| PAS/PAC sensor-containing diguanylate cyclase [Geobacter sp. M18] gi|320126733|gb|ADW14293.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M18] Length = 300 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 25/215 (11%) Query: 63 YILVENLSLVIISITISLLL---GYISGSILKELFISYN-------RISQLSRIDCLSGL 112 Y+ ++ + +S+ +S LL G + G I ELF R+ +L ++ L GL Sbjct: 88 YMHHKDGHRIPVSVRVSPLLDEKGNVLGGI--ELFTDITSMAANTLRVKELEKLALLDGL 145 Query: 113 --LNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L + FI + YN I+F D+D+FK++ND +GH VGD+V+ F+++ Sbjct: 146 THLANRVFIEREIQNRFYEMRRYNVPFGILFIDVDHFKKVNDRYGHDVGDRVLKFVANAF 205 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITIS 221 V GR GGEEF ++ L N LR +IE S ++ G I +T+S Sbjct: 206 VTNARPFDVYGRWGGEEFIGVMRNIDIEDLEHLGNRLRLLIEKSY--LTHGDEIVSVTVS 263 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + +II RAD LY +K GRNR+ Sbjct: 264 IGATVAQPGDTTDSIIKRADLLLYQSKAGGRNRLT 298 >gi|254562531|ref|YP_003069626.1| diguanylate cyclase [Methylobacterium extorquens DM4] gi|254269809|emb|CAX25782.1| putative membrane protein, diguanylate cyclase (GGDEF) domain [Methylobacterium extorquens DM4] Length = 675 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 14/182 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 +E+ + +LS D L+GL N A S L + ++ D+D+FK N Sbjct: 224 REVVQRGEELFRLSTTDVLTGLANRRAIDSVLQELWLANVNSGQAFGVILIDVDFFKLYN 283 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD +A L + + + +GR GGEEFAA S ++ A ++R+ Sbjct: 284 DRYGHQRGDSCLAALGEAMRGAADKRRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQA 343 Query: 203 IENSQINISS--GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +E QI ++ P H+T+S G A+ +P I AD ALYVAK+ GRNR Sbjct: 344 VEALQIPHAARRDPLSHVTVSIGAAFSADVADDKP-ERAISAADDALYVAKEEGRNRARI 402 Query: 258 FS 259 F+ Sbjct: 403 FN 404 >gi|15642222|ref|NP_231855.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|9656782|gb|AAF95368.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 512 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N F IS + LS+ D+D+FKQ+NDN+GHP Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410 Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD +V+A + V GT + R GGEEF ++QEA +R I Sbjct: 411 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S P +T+S G+ + E + + RADQA+Y AK GRN+VV Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510 >gi|254426835|ref|ZP_05040542.1| GGDEF domain protein [Alcanivorax sp. DG881] gi|196193004|gb|EDX87963.1| GGDEF domain protein [Alcanivorax sp. DG881] Length = 395 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 15/206 (7%) Query: 69 LSLVIISITISLLLGYISGSI------LKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 LS I+ T++ + +++G + L+ ++ ++ D L+GL N A Sbjct: 181 LSYYWIASTVAFSVPFVAGVLTLVSLLLRRWVYREAQVRAMAVQDPLTGLSNRRALFDQF 240 Query: 123 G-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 E LS+ D+D+FKQIND GH GD V+ +++ L +GR+ Sbjct: 241 AHEMARARRTGEALSVCVMDLDHFKQINDRHGHAAGDTVLVRVANLLRECLRETDRIGRI 300 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-- 233 GGEEF + + A + R + + + + G + ++ S G+ E Sbjct: 301 GGEEFVLVLPDTGHEGAEKVIERCRAALVGTPVMLDVGEPLTVSASFGVVTALAGEQATE 360 Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259 S ++ RAD ALY+AKK GRNRV +S Sbjct: 361 SQLVSRADDALYLAKKRGRNRVEFWS 386 >gi|153825311|ref|ZP_01977978.1| GGDEF family protein [Vibrio cholerae MZO-2] gi|149740995|gb|EDM55064.1| GGDEF family protein [Vibrio cholerae MZO-2] Length = 512 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N F IS + LS+ D+D+FKQ+NDN+GHP Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410 Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD +V+A + V GT + R GGEEF ++QEA +R I Sbjct: 411 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S P +T+S G+ + E + + RADQA+Y AK GRN+VV Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510 >gi|126173551|ref|YP_001049700.1| diguanylate cyclase [Shewanella baltica OS155] gi|125996756|gb|ABN60831.1| diguanylate cyclase [Shewanella baltica OS155] Length = 581 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 11/176 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146 + + +++R+D L+G+LN A F+ + + ++ FD+D+FK+IND+F Sbjct: 389 MQKRKFMRMARMDALTGILNRGAGQELGENLFVQATARGGD-FCVILFDLDFFKRINDSF 447 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD + + D L R+GGEEFA + E++ +A R IE Sbjct: 448 GHGTGDWALKKVVDSLKSHIRNGDVFARIGGEEFAILLPYADEEKGMEVAEQCRARIEAI 507 Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261 SG IT S G++ + + + +RAD ALY AK +GRN VV +SDI Sbjct: 508 DTQ-HSGHKFVITASFGVSGLMADDLSLDPLFHRADMALYAAKANGRNAVVRYSDI 562 >gi|134292823|ref|YP_001116559.1| diguanylate cyclase [Burkholderia vietnamiensis G4] gi|134135980|gb|ABO57094.1| diguanylate cyclase [Burkholderia vietnamiensis G4] Length = 510 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 9/175 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 LK I+ +++ +L+ D L+G+ N F + L ++ LS++F D+D+FK Sbjct: 326 LKRRQIAESKLYRLAHTDSLTGVENRGTFDTVLTKEAQRASRSGRPLSVLFVDVDHFKAF 385 Query: 143 NDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND++GH GD V+ ++ + V R GGEEF + + AA +A+ +R+ Sbjct: 386 NDHYGHLAGDDVLRRVAQTASRCLRRNSDHVARYGGEEFVVTLPDTDARGAATVADAIRR 445 Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255 I I P H+T+S G+A + +T++ AD+ALY AK GRNRV Sbjct: 446 SIAALDIAHERSPYGHLTVSIGVATAVGGRVSAATLLRLADEALYRAKSGGRNRV 500 >gi|94314577|ref|YP_587786.1| putative diguanylate cyclase [Cupriavidus metallidurans CH34] gi|93358429|gb|ABF12517.1| putative diguanylate cyclase (GGDEF domain) [Cupriavidus metallidurans CH34] Length = 395 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 6/163 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGD 152 RI D L+ L N +F ++ N + ++ D+D+FK INDN GH GD Sbjct: 216 ERIQHERDTDALTRLHNRRSFEEIARETISRANGGVPGLILVDLDFFKLINDNHGHASGD 275 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ + + V G GRLGGEEFA ++ +EA +A ++R +E ++ + Sbjct: 276 AILVEFARIVRRVVGARGIAGRLGGEEFAVLLPRTTGEEAIHIAEEIRATLERARFE-TL 334 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S +T S G+A E + ++ RAD LY AK+SGRNRV Sbjct: 335 PDSPRVTASFGVAVWQPPESLDALMSRADGLLYTAKRSGRNRV 377 >gi|330877047|gb|EGH11196.1| GGDEF domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 308 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 Y +Q + D L+ N A SL + + LS++ DID+FK++ND +GH Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISSRHKQPLSLLMLDIDHFKKVNDEYGHH 199 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ L V R GGEEF + A ++ LR+ + N + Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGATAAELIGERLRQAVRNLEFR 259 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P++ +T+S G + E +++ RAD ALYVAK+ GRNR+ S Sbjct: 260 -ELDPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRLAMAS 308 >gi|300702652|ref|YP_003744252.1| diguanylate cyclase [Ralstonia solanacearum CFBP2957] gi|299070313|emb|CBJ41605.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum CFBP2957] Length = 457 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 12/197 (6%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNE- 127 S++ + + LL+ ++ ++ + LF ++ + Q S D L+G+ N S F +++E Sbjct: 252 SMLAPGVLVCLLVWEVT-TLYRRLFEAHVSLQQASTHDALTGIYNRSYFNEQFPRAFDEA 310 Query: 128 -----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181 S++ D+D+FK+ ND FGH GD + ++ L V F+ R GGEEFA Sbjct: 311 RRKAQPFSLLMIDVDHFKRYNDTFGHLKGDGCLVTIAAALEGVLRRHAGFIARYGGEEFA 370 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYR 239 ++ ++A +LA R+ + + +I + PS ++TISAG A + S +I Sbjct: 371 VVLPDATPRDALLLAESAREAVLHLRIEAPT-PSRYVTISAGCATAMPEASTSLEALIEA 429 Query: 240 ADQALYVAKKSGRNRVV 256 AD LY AK +GRN VV Sbjct: 430 ADATLYRAKAAGRNLVV 446 >gi|294341524|emb|CAZ89941.1| conserved hypothetical protein; putative GGDEF domain and membrane protein [Thiomonas sp. 3As] Length = 412 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/182 (34%), Positives = 91/182 (50%), Gaps = 13/182 (7%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFF 134 L I G +L + R+ L+ D L+GLLN A L SY K ++ Sbjct: 220 LSLIYGGMLMARLV--RRLHDLALKDPLTGLLNRRAAQQLLEREWASYRHKDLPFCVLMI 277 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK+IND +GH VGD+V+ L+ L V R+GGEEF + A Sbjct: 278 DIDHFKRINDEYGHAVGDRVLTGLATLLREGTRPTDHVARMGGEEFLVFLPQTELPSAQA 337 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253 A LR +++ + + ITIS G+A+ ++ ++ RAD+ALY AK +GRN Sbjct: 338 AAERLR---QHTAAWVLQPEELSITISIGVAQAAAEDSAFDDLLIRADRALYAAKSAGRN 394 Query: 254 RV 255 RV Sbjct: 395 RV 396 >gi|157375391|ref|YP_001473991.1| sensory box protein [Shewanella sediminis HAW-EB3] gi|157317765|gb|ABV36863.1| sensory box/GGDEF domain protein [Shewanella sediminis HAW-EB3] Length = 422 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 7/156 (4%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L S Y + S++ D+D+FKQIND +GH VGD+++ + Sbjct: 265 DYLTGLRNRNYLDHKLISMSNRFKRYGFRFSLLMIDLDHFKQINDTYGHMVGDQILKCFA 324 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D + + R GGEEFA G+ A + A L K I I T Sbjct: 325 DAATALLREGDKIARFGGEEFAVILPGTELYAAKLTATRLCKHISEQAFIGPDEKVIPFT 384 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+ E ++ + +I+ RAD+ALY AK GRNR+ Sbjct: 385 VSIGVVEFEPEDDVKSIMNRADEALYKAKVGGRNRI 420 >gi|51244082|ref|YP_063966.1| hypothetical protein DP0230 [Desulfotalea psychrophila LSv54] gi|50875119|emb|CAG34959.1| hypothetical protein DP0230 [Desulfotalea psychrophila LSv54] Length = 440 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 91/177 (51%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 E+ I +R+ S D L+GL N + Y +S++ D+D FK +ND Sbjct: 269 EIEIYTSRLELFSITDSLTGLYNRFRLDDVFLYEVEQAQRYKRSVSLILLDLDKFKSVND 328 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N GH VGD+VI ++ L VGR GGEEF ++ + A ILA+ +R +E Sbjct: 329 NHGHQVGDQVIREIARILKESTRVVDTVGRWGGEEFLVICAETTLEGAGILADKIRVSVE 388 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + + +T S G++ + +++I RAD ALY AK++GRNR VCF ++ Sbjct: 389 ENDFPVVGS----VTCSFGVSSFHPGDNEASMICRADVALYFAKENGRNR-VCFEEL 440 >gi|114331433|ref|YP_747655.1| diguanylate cyclase [Nitrosomonas eutropha C91] gi|114308447|gb|ABI59690.1| diguanylate cyclase [Nitrosomonas eutropha C91] Length = 551 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N + ++ ++ ++ DIDYFK IND GH VGD++ Sbjct: 386 KLSITDGLTGLYNRTKLDTILSEQLARFKRHDRPFCLLMIDIDYFKTINDKLGHIVGDRI 445 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L+ T + R GG+EF ++ A A +R + ++ + P Sbjct: 446 LVTVASVLLKSIRTIDYAARYGGDEFVVILTETNSSAAIKTAERIRAEVNSACLAFKEHP 505 Query: 215 SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257 + HIT+S GI + + + + +I RAD ALY AK+SGR+RV C Sbjct: 506 A-HITLSIGITQSYYDDITPNDLIARADAALYEAKESGRDRVHC 548 >gi|270158318|ref|ZP_06186975.1| PAS/GGDEF domain-containing protein [Legionella longbeachae D-4968] gi|289163435|ref|YP_003453573.1| regulatory protein (GGDEF, PAS, PAC domains) [Legionella longbeachae NSW150] gi|269990343|gb|EEZ96597.1| PAS/GGDEF domain-containing protein [Legionella longbeachae D-4968] gi|288856608|emb|CBJ10415.1| putative regulatory protein (GGDEF, PAS, PAC domains) [Legionella longbeachae NSW150] Length = 680 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 8/169 (4%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S+LS D L+ L N S + + N L + DID FK ND + H GD Sbjct: 510 LSELSLHDPLTNLYNRRYLNEILSRELILIARENRTLCVAMLDIDNFKHFNDTYSHLAGD 569 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ + L F F R GGEEF L ++ A +LR+ I+N + Sbjct: 570 ELLKAIGKLLKNSFRESDFCVRFGGEEFVVVLLNTTLNNALTKMEELREKIKNITLYFKG 629 Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 H+TIS G+AE I II AD ALY AK++G++RV+ F+ Sbjct: 630 NRLSHVTISIGVAEALKDGASIEEIIKAADHALYAAKQAGKDRVIAFTQ 678 >gi|229020638|ref|ZP_04177372.1| GGDEF domain protein [Bacillus cereus AH1273] gi|229026851|ref|ZP_04183178.1| GGDEF domain protein [Bacillus cereus AH1272] gi|228734448|gb|EEL85115.1| GGDEF domain protein [Bacillus cereus AH1272] gi|228740662|gb|EEL90926.1| GGDEF domain protein [Bacillus cereus AH1273] Length = 343 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 18/230 (7%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENL---SLVIISITISLLLGYISGSILKE 92 SIF + F N++ I + P Y IL +++ SL ++ ++ ++S S + + Sbjct: 118 SIFAKWIWF--NVYSLSILILPLY----ILFKDMYVVSLYLVCCIVAAYFTFVSASYVLQ 171 Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145 + + + ID L+ L N F + + N+ L ++ DID+FK +ND Sbjct: 172 SNELFQTMKHYATIDALTNLGNVRQFDLEMNRHIDNKYMKNDSLCLLLIDIDHFKYVNDT 231 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GHP GD+V+ + L+ V R GGEEFA + +R +E Sbjct: 232 YGHPAGDEVLKQVGRILLENGPFSNLVFRKGGEEFALLIPKKGLAFGTRIGEQIRLAVEK 291 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +G I IT+S GI+E +K+ I AD ALY +K++GRN+V Sbjct: 292 HSFQLKNGTKIKITVSVGISE--YKKSPEQFIQAADDALYYSKRNGRNQV 339 >gi|254457773|ref|ZP_05071201.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207086565|gb|EDZ63849.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 486 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 11/192 (5%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSY 125 +IIS+ +LL I +L+ + ++ L+ D L+ + N F + SL Sbjct: 288 LIISLIFTLLFAIIIMFVLRNY---HRKLEILADFDSLTEIPNRRNFNTKFEQFLSLHKR 344 Query: 126 NEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 +E+ + +VF DID FK IND GH +GD+V+ ++ L + R GGEEF A Sbjct: 345 DERPICLVFMDIDDFKSINDELGHNIGDEVLIQVAKILKNRVRKTDLLSRWGGEEFTIAF 404 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + ++ +A + +R+ IE ++ + ++T S G+ + I T+I RAD+A+ Sbjct: 405 IDTNINDAHTITQKIREAIEKNET-LKKTVGYNLTASFGLTACNEYDTIDTVISRADKAM 463 Query: 245 YVAKKSGRNRVV 256 Y AK+ G+NRVV Sbjct: 464 YEAKQHGKNRVV 475 >gi|172064518|ref|YP_001812169.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria MC40-6] gi|171997035|gb|ACB67953.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria MC40-6] Length = 326 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 13/181 (7%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +E + ++ + + D L+G+ N F + LG Y LS++ FD+D+FK Sbjct: 149 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFARWQRYGGDLSMLLFDLDHFKT 208 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH GD V+ + ++ + + GR GGEEFA ++ EA +A+ +R Sbjct: 209 INDRFGHAAGDAVLRETARRVASIVRSQDTFGRFGGEEFALLLPCTNLDEAMRVADKVRD 268 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258 I ++ ++ + G S+ +T S G A C ++ ++ AD ALY AK+ GR+R + + Sbjct: 269 AIGSTPVD-AEGVSVPVTASVGGA--CATPGVAAPDVLVNEADTALYRAKRLGRDRSIAY 325 Query: 259 S 259 + Sbjct: 326 A 326 >gi|311696761|gb|ADP99634.1| diguanylate cyclase [marine bacterium HP15] Length = 366 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFGHPV 150 R+ +++ D L+GL N S F +L + E+ ++V DID+FK +ND GH Sbjct: 184 QRLVDMAQTDALTGLANRSNFQGTLNRTIAEGERSGIGFALVVMDIDHFKVVNDTLGHEA 243 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + FVGRLGGEEF +A +L ++LR+ I + ++ Sbjct: 244 GDFVLKNISRCLTERLRSTDFVGRLGGEEFGLILRDVKPADAFVLMDELRQRISDRELPY 303 Query: 211 SSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T S GIA H ++ AD+ LY K++GRN VV Sbjct: 304 GDA-RIRVTASFGIAHWPDHGREAESLFRVADRWLYSGKRAGRNCVV 349 >gi|254796867|ref|YP_003081704.1| Response regulator/GGDEF domain protein PleD [Neorickettsia risticii str. Illinois] gi|254590103|gb|ACT69465.1| Response regulator/GGDEF domain protein PleD [Neorickettsia risticii str. Illinois] Length = 457 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 9/164 (5%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++ ID L+ L N F +++L S N+ S++ DIDYFK+IND GH GD Sbjct: 287 KMAVIDPLTSLYNRYYFEKYMDELLATLTKSQNKTFSLMMIDIDYFKKINDACGHLSGDL 346 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISS 212 V+ L+ L V + GGEE + ++A A +RK +E ++ + I+ Sbjct: 347 VLKQLATCLKGCLRLNDLVAKFGGEEIVVVLVDIGLEDAFATAERIRKTVEKTEFSTIND 406 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +T+S G++E ++ T+I RAD LY+AK+ GRNRVV Sbjct: 407 EVKVPLTVSIGVSEYQPQDTTKTLIGRADANLYIAKEKGRNRVV 450 >gi|317493746|ref|ZP_07952163.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918073|gb|EFV39415.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 354 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 123/257 (47%), Gaps = 29/257 (11%) Query: 23 SPHTFMI--YFSIFFSIFIATVIFIANIFLFYIGLTP----------FYGLEYILVENLS 70 S H F++ FS+FF IA V N+ F + P F+ + IL L+ Sbjct: 97 SGHEFLLINLFSVFF---IAAVTLSDNLLAFCLNAIPVAITVIILEDFHNMTRILFV-LA 152 Query: 71 LVIISITISLLLGY----ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------IS 120 L II++++ ++ + ++ +L R S LS ID L+ LLN +S Sbjct: 153 LPIIALSLHRVITRRREAFTRQLVNQLERDKARFSDLSMIDPLTTLLNRRGLEFQFHHMS 212 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + + K +V DID+FK ND++GH GD + ++ + + R GGEEF Sbjct: 213 NDCATEHKDFVVMIDIDFFKLYNDHYGHQYGDTALTAIAQIIKEAVRSRDLAVRYGGEEF 272 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPISTIIY 238 +SE A + +R +E + P+ + +TISAG++E + + I Sbjct: 273 LLILRDASETLAIQICEHIRSHVEQLALINEYQPNGYSVVTISAGLSE-MYNNNLENAIA 331 Query: 239 RADQALYVAKKSGRNRV 255 RADQALY++K+ GRNRV Sbjct: 332 RADQALYLSKQKGRNRV 348 >gi|300951001|ref|ZP_07164875.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1] gi|300959010|ref|ZP_07171108.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1] gi|301644676|ref|ZP_07244658.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] gi|300314377|gb|EFJ64161.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1] gi|300449712|gb|EFK13332.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1] gi|301076990|gb|EFK91796.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] gi|315619533|gb|EFV00060.1| uncharacterized protein yneF [Escherichia coli 3431] Length = 296 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 8/157 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 132 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 189 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 190 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 248 Query: 223 GIAE-RCH----KEPISTIIYRADQALYVAKKSGRNR 254 G+ R + + ++ AD LY +KK GRNR Sbjct: 249 GVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 285 >gi|262173479|ref|ZP_06041156.1| GGDEF family protein [Vibrio mimicus MB-451] gi|261890837|gb|EEY36824.1| GGDEF family protein [Vibrio mimicus MB-451] Length = 326 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQI 142 +++ +Y I S D L+GLLN I+ N +L I D+D+FK I Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRNTFAINPSAEENHRLWIAMLDLDHFKAI 191 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+FGH +GD+ + + Q+ FG + R GGEEF EQ + R+ Sbjct: 192 NDHFGHMIGDETLLMFAQQMQHYFGPSSQLFRFGGEEFVIVFSSGDEQAINRTLDGFRRH 251 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I P I ++ SAG + + TI+ AD+ALY AK+ GRN+V C+ ++ Sbjct: 252 IRQHTF-----PRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRNQVHCYENL 306 >gi|91794309|ref|YP_563960.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91716311|gb|ABE56237.1| GGDEF domain [Shewanella denitrificans OS217] Length = 292 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 89/181 (49%), Gaps = 14/181 (7%) Query: 85 ISGSILKELFISYNRISQ----LSRIDCLSGLLN----HSAFISSLGSYN--EKLSIVFF 134 + L+EL + R +Q LS D L+ L N +S +I N E + ++ Sbjct: 107 VKNKQLEELRGNLERKNQQLDFLSAHDPLTKLYNRHYFNSQYIDKKQDENNVEPMCLIIM 166 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+DYFK INDNFGH GD V+A L++ L+ V R GGEEF + Q A Sbjct: 167 DVDYFKLINDNFGHNTGDIVLAKLAELLINTVRGSDVVTRWGGEEFIILCPKLALQSACE 226 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L L I+ +Q + IT S G+A+R E I + RAD+ALY AK GRN+ Sbjct: 227 LCQRLAIQIQQTQFT----DGVKITCSFGVAQREANESILMCLDRADKALYRAKDGGRNQ 282 Query: 255 V 255 Sbjct: 283 T 283 >gi|154248337|ref|YP_001419295.1| diguanylate cyclase [Xanthobacter autotrophicus Py2] gi|154162422|gb|ABS69638.1| diguanylate cyclase [Xanthobacter autotrophicus Py2] Length = 401 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 19/205 (9%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS-RIDCLSGLLNHSAFISS 121 Y LV +S I+ + L+L +LK + + R SQ++ D LSGLLN F S Sbjct: 192 YALVSQVSSGILFLATGLIL------LLKSV-QAVVRESQIAAETDVLSGLLNRRGFDSR 244 Query: 122 L-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 + ++++ D+D+FK +ND FGH GD I + L + RLG Sbjct: 245 AERLIAQAKGRPVALLILDLDHFKSVNDRFGHSTGDAAIRAFAVLLSRTVPPSALIARLG 304 Query: 177 GEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 GEEFA + + A + A +R + ++ + +T+S G+A + Sbjct: 305 GEEFAVLLDRTGLEAARLQAEAIRLATFHHQEVGLPK-----LTVSIGVAAPASSHLLPE 359 Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260 + RAD ALY AK++GRNRV C ++ Sbjct: 360 AMERADAALYEAKRAGRNRVCCAAE 384 >gi|320109343|ref|YP_004184933.1| diguanylate cyclase [Terriglobus saanensis SP1PR4] gi|319927864|gb|ADV84939.1| diguanylate cyclase [Terriglobus saanensis SP1PR4] Length = 389 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 16/175 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N++ L+ D L+ + N AF+ S++ D+D+FK+IND FGH Sbjct: 214 NKLEYLASTDPLTRIYNRRAFLEWCDREVIKSQRTETPFSLLILDLDHFKRINDLFGHHS 273 Query: 151 GD-KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---- 205 GD +IA + V G + +GR GGEEF G+S + A I+AN + ++ Sbjct: 274 GDAALIAVVETMQNAVRGIDI-LGRWGGEEFVILLPGASAEAAMIVANRVCNAVKAMRLP 332 Query: 206 --SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 Q S P H+T+S G++ R ++ I I RAD ALY AK +GRNRV+ Sbjct: 333 AFEQKEPSKDPEQHLTVSLGLSTWRGPEDTIKDIARRADSALYQAKAAGRNRVLV 387 >gi|134283795|ref|ZP_01770492.1| diguanylate cyclase [Burkholderia pseudomallei 305] gi|134244783|gb|EBA44880.1| diguanylate cyclase [Burkholderia pseudomallei 305] Length = 454 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 9/177 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141 +L+EL + ++ L+ D L+G N FI + S S++ D+D FK Sbjct: 278 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 337 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 INDN+GH VGD V+ Q +V + R+GGEEF A+ +A +R Sbjct: 338 INDNYGHQVGDVVLRNFVRQCLVAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 397 Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 398 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453 >gi|78776844|ref|YP_393159.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78497384|gb|ABB43924.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Sulfurimonas denitrificans DSM 1251] Length = 659 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 84/167 (50%), Gaps = 13/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D L+G+ N F + YN LS++ DID+FK+IND +GH GD Sbjct: 498 LEKMANTDNLTGIYNRRKFEEIIKIEMERSARYNSNLSLIMIDIDHFKRINDTYGHDEGD 557 Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 VI + + + +FV R GGEEF + + A+ILA LR IE+ +N Sbjct: 558 NVIRKTVEIVSKNIRHLDVFV-RWGGEEFIVLCPQTESKNASILAEKLRVAIES--VNYE 614 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + IT S G+ E S+ I R D ALY AK GRNRVV Sbjct: 615 TLGK--ITCSFGVTSYIKDEDKSSFIKRLDTALYSAKDEGRNRVVAL 659 >gi|313499507|gb|ADR60873.1| Diguanylate cyclase [Pseudomonas putida BIRD-1] Length = 544 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 14/175 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144 ++L+E NR +Q D L+GL N + +S L + N + + + DID+FK+IND Sbjct: 376 NLLQERIGRLNRDAQ---TDPLTGLGNRRSLEISLSLLEAENREFAAIALDIDHFKRIND 432 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH VGD+V+ L++ + + R GGEEF G++ AA +A LR ++ Sbjct: 433 SHGHEVGDQVLRQLAELMRRCCREGDLLCRTGGEEFLILLPGATLNVAAAVAERLRVTVQ 492 Query: 205 NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + S G +TIS G+ + H EP++ + AD+ALY AK+ GRNRV Sbjct: 493 EMPVE-SVGA---VTISLGVTHWDGKTHGEPMNA-LGEADRALYRAKQEGRNRVA 542 >gi|331668646|ref|ZP_08369494.1| cellulose synthesis regulatory protein [Escherichia coli TA271] gi|331063840|gb|EGI35751.1| cellulose synthesis regulatory protein [Escherichia coli TA271] Length = 558 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLYQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|237653253|ref|YP_002889567.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T] gi|237624500|gb|ACR01190.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T] Length = 710 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 102 QLSRIDCLSGLLNHSAFI----SSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154 QL+ D L+GL N F+ LG +++ D+D+FK+IND GH GD+V Sbjct: 523 QLATSDPLTGLWNRRHFVEVVRGELGRVRRNQAPAALLLMDLDFFKRINDTHGHAAGDEV 582 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSG 213 + + + RLGGEEF A L S + A+ A D LR+++ +S ++ SG Sbjct: 583 LRHFTATVSAQLREADVFARLGGEEF-AVLLPSIDALGAVRAADRLRRVVADSPASVDSG 641 Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 ++H ++S G E RAD+ALY AK +GRNRVV C Sbjct: 642 -ALHYSVSIGATMLDAADEGYEAAYARADEALYAAKHAGRNRVVLAPASAGAPC 694 >gi|268680440|ref|YP_003304871.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268618471|gb|ACZ12836.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 821 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 8/172 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 EL + ++ L+ ID L+ + N F Y N L I+ DID+ K++ND Sbjct: 647 ELSLLNAKLKDLANIDELTKIANRRYFFLLATQYFHAAKRNNTPLHILSIDIDWLKKVND 706 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH +GD+V+ + GR+GGEEF + Q A ILA +R +E Sbjct: 707 TYGHAMGDEVLKAFCKHVQSSLRQSDLFGRIGGEEFCVCIQNTPLQGAKILAEKIRHKVE 766 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 S+ +I++ IT+S G++ E I + R+D+ALY AK GRN+V Sbjct: 767 ASRESINNQALPAITVSIGLSSLHPEDEEIFDTLKRSDEALYKAKHHGRNQV 818 >gi|222085608|ref|YP_002544138.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221723056|gb|ACM26212.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 458 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 9/167 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N + L + LSI+ DID FK +ND +GH GD+V Sbjct: 291 ELAVTDALTGLNNRRYLDNHLKILFNRSLARGRPLSILITDIDRFKLVNDTYGHDAGDEV 350 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSG 213 + + ++ R GGEEF + + AA +A LR +E + + + +G Sbjct: 351 LKEFAARIRSTVRGADLACRYGGEEFVVVMPDTPPEVAAAVAERLRAAVETAPVTLREAG 410 Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 +++IT S GI+ R E ++ +AD ALY AKK+GRNRVV + Sbjct: 411 AALNITASFGISSRLESIETPEQLMKQADLALYEAKKAGRNRVVAAA 457 >gi|153213789|ref|ZP_01948997.1| GGDEF family protein [Vibrio cholerae 1587] gi|124115713|gb|EAY34533.1| GGDEF family protein [Vibrio cholerae 1587] Length = 512 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N F IS + LS+ D+D+FKQ+NDN+GHP Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410 Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD +V+A + V GT + R GGEEF ++QEA +R I Sbjct: 411 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S P +T+S G+ + E + + RADQA+Y AK GRN+VV Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510 >gi|121586234|ref|ZP_01676024.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121726575|ref|ZP_01679824.1| GGDEF family protein [Vibrio cholerae V52] gi|147673860|ref|YP_001217741.1| GGDEF family protein [Vibrio cholerae O395] gi|153817082|ref|ZP_01969749.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|153820810|ref|ZP_01973477.1| GGDEF family protein [Vibrio cholerae B33] gi|227082348|ref|YP_002810899.1| GGDEF family protein [Vibrio cholerae M66-2] gi|254849354|ref|ZP_05238704.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|297580867|ref|ZP_06942792.1| GGDEF family protein [Vibrio cholerae RC385] gi|298500400|ref|ZP_07010205.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|121549500|gb|EAX59526.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121631028|gb|EAX63407.1| GGDEF family protein [Vibrio cholerae V52] gi|126512350|gb|EAZ74944.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|126521602|gb|EAZ78825.1| GGDEF family protein [Vibrio cholerae B33] gi|146315743|gb|ABQ20282.1| GGDEF family protein [Vibrio cholerae O395] gi|227010236|gb|ACP06448.1| GGDEF family protein [Vibrio cholerae M66-2] gi|227014120|gb|ACP10330.1| GGDEF family protein [Vibrio cholerae O395] gi|254845059|gb|EET23473.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|297534693|gb|EFH73529.1| GGDEF family protein [Vibrio cholerae RC385] gi|297541093|gb|EFH77147.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 512 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N F IS + LS+ D+D+FKQ+NDN+GHP Sbjct: 351 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 410 Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD +V+A + V GT + R GGEEF ++QEA +R I Sbjct: 411 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 466 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S P +T+S G+ + E + + RADQA+Y AK GRN+VV Sbjct: 467 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510 >gi|89098311|ref|ZP_01171195.1| GGDEF [Bacillus sp. NRRL B-14911] gi|89086860|gb|EAR65977.1| GGDEF [Bacillus sp. NRRL B-14911] Length = 454 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 13/173 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPV 150 ++ +L+ ID L+ + N + F + SLG + +S++ FDID+FK+IND +GH Sbjct: 274 EQLKELASIDGLTQVYNRTYFMKQSLESLGGISPNGGDVSLIMFDIDHFKKINDEYGHET 333 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V++ ++ +GR GGEEF +S EA LA +R + + Sbjct: 334 GDLVLSHVARVAKESIRAADVIGRYGGEEFIILLPDTSFDEAYDLAEAIRLNVSEQYTKL 393 Query: 211 SSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++H T+S G++ + +PI ++ ADQALY AK++GRN V F Sbjct: 394 GQ-VNVHATLSLGVSHMFLFPQVLDDPIQFLMREADQALYAAKRNGRNNVQRF 445 >gi|117920670|ref|YP_869862.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117613002|gb|ABK48456.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 342 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 11/200 (5%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118 ++ E SL++ + T+ L + G ++ L +S + D L+ L N A+ Sbjct: 140 VIDEMQSLLVNNQTMEQSLSAM-GQEVQNLKTEMENLSLAAMTDQLTSLHNRRAYEIAIQ 198 Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 I + + S++ DID FK NDN+GH VGDKV+A+++ L FV R G Sbjct: 199 DHIHRAEQQHTRCSLLLIDIDRFKVFNDNYGHQVGDKVLAYVALALKQCVRGDDFVARYG 258 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---ITISAGIAERCHKEPI 233 GEEF + +A +A LR+ I ++ I + IT+S G+A + Sbjct: 259 GEEFVVLLPNTHFHDALQVAETLRERISERRLAIGKDKKLSLGAITVSIGLASLQEGDDA 318 Query: 234 STIIYRADQALYVAKKSGRN 253 T+ RAD+ALY AK GRN Sbjct: 319 DTLFSRADKALYEAKSDGRN 338 >gi|288940332|ref|YP_003442572.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288895704|gb|ADC61540.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 559 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 11/178 (6%) Query: 89 ILKELFISYNRISQLSRI---DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDY 138 ++ E+ + R+ L + D L+GL NH+ + +S L + D+D+ Sbjct: 375 LVTEVHLRAERMRTLRSLMIRDSLTGLFNHNTILQLLKVAMASCQRSGRLLCLAMIDVDH 434 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +ND GHP GD+V+ L L + VGR GGEEFA G +A + + Sbjct: 435 FKAVNDTHGHPTGDQVLMALGRTLRLRLRESDIVGRYGGEEFAVIMTGLDADQAKTIMDS 494 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I+ G H T S G+A S +I AD ALY AK++GRNR++ Sbjct: 495 LRESFAAVTF-IADGTEFHCTFSGGLAAFPEYSDPSALIEAADAALYRAKRAGRNRIL 551 >gi|188493935|ref|ZP_03001205.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638] gi|188489134|gb|EDU64237.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638] Length = 558 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|330446066|ref|ZP_08309718.1| diguanylate cyclase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490257|dbj|GAA04215.1| diguanylate cyclase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 339 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 11/174 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++ LS D L+ L N + + L ++ +++V FDID+FK++ND +GH G Sbjct: 149 QLTHLSITDRLTQLYNRGHWENCLSDEFDRYQQLHQPMTLVMFDIDHFKKVNDTYGHVAG 208 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D VI ++ + GR GGEEF G++ + LRK +E S I + Sbjct: 209 DAVIKNIASIVRSAKRQSDIAGRYGGEEFGVILPGTTADMTSYFTERLRKKVEKSSIEV- 267 Query: 212 SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 G +I++TIS GI E H + + + D ALY +KK+GRN+ ++ N Sbjct: 268 DGTAINVTISLGICE-LHSGITNYESWLEQTDSALYESKKNGRNQTTVITEEGN 320 >gi|323493876|ref|ZP_08098993.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] gi|323311817|gb|EGA64964.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] Length = 411 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 21/174 (12%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +L+ D L+ + A S L + +I DID+FK ND +GH GD V+ ++ + Sbjct: 236 ELAFKDTLTDIPGRLALESDLRHLGRRYTIAMLDIDHFKSFNDTYGHDTGDDVLKLVASR 295 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP---- 214 L +V G V R GGEEF G EA LR IE+ Q+ N + P Sbjct: 296 LQLVGGRAK-VYRYGGEEFTVLFKGKLADEAQDHLELLRSSIESYQMTLRNQDARPKDDK 354 Query: 215 -------------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S+++TIS G+A+ + T++ AD ALY AK+SGRN+V Sbjct: 355 VGSKKRGGKKNQDSVNVTISIGVADSSESNDVYTVMKSADSALYKAKQSGRNKV 408 >gi|307312459|ref|ZP_07592093.1| diguanylate cyclase [Escherichia coli W] gi|306907630|gb|EFN38133.1| diguanylate cyclase [Escherichia coli W] gi|315061255|gb|ADT75582.1| predicted diguanylate cyclase [Escherichia coli W] gi|323378168|gb|ADX50436.1| diguanylate cyclase [Escherichia coli KO11] Length = 564 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 551 KQAGRNR-VCASD 562 >gi|298249633|ref|ZP_06973437.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963] gi|297547637|gb|EFH81504.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963] Length = 697 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 10/180 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQIN 143 +L E+ Y ++ + D ++ L NH A +S+L +I+F D+D FK+IN Sbjct: 517 LLMEVDRLYREQARAATTDPVTELPNHRAIMSTLNVVFTECRQRTCAILFVDVDRFKRIN 576 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGD ++ + +L VGR GGEEFA ++ A +A LR+ + Sbjct: 577 DRWGHQVGDCILHEVGQRLRASLRADDTVGRYGGEEFAVILRDTNLDLAMSVAERLRRAL 636 Query: 204 ENSQINISS---GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 E + H+TIS GIA H ++ RAD A+Y AK++GRN VC + Sbjct: 637 EERPCCWQTEGERHETHVTISVGIALYPDHASTPDQLMKRADLAMYRAKQAGRN-CVCIA 695 >gi|229522172|ref|ZP_04411589.1| GGDEF family protein [Vibrio cholerae TM 11079-80] gi|229341097|gb|EEO06102.1| GGDEF family protein [Vibrio cholerae TM 11079-80] Length = 495 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N F IS + LS+ D+D+FKQ+NDN+GHP Sbjct: 334 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 393 Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD +V+A + V GT + R GGEEF ++QEA +R I Sbjct: 394 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 449 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S P +T+S G+ + E + + RADQA+Y AK GRN+VV Sbjct: 450 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 493 >gi|206564673|ref|YP_002235436.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] gi|198040713|emb|CAR56699.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] Length = 312 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 97/182 (53%), Gaps = 15/182 (8%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +E + ++ + + D L+G+ N F + LG Y LS++ FD+D+FK Sbjct: 135 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFARWQRYGGDLSVLLFDLDHFKT 194 Query: 142 INDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND FGH GD V+ + ++ +V G F GR GGEEFA ++ EA +A+ +R Sbjct: 195 INDRFGHAAGDAVLRETARRVASIVRGQDTF-GRFGGEEFALLLPCTNLDEAMRVADKVR 253 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257 I + ++ + G S+ +T S G A C K T ++ AD ALY AK+ GR+R V Sbjct: 254 DAIGSLPVD-AEGVSVPVTASVGGA--CAKAGALTCDVLVNEADAALYRAKRLGRDRSVA 310 Query: 258 FS 259 ++ Sbjct: 311 YA 312 >gi|170680876|ref|YP_001743290.1| diguanylate cyclase [Escherichia coli SMS-3-5] gi|170518594|gb|ACB16772.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli SMS-3-5] Length = 558 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|195952594|ref|YP_002120884.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1] gi|195932206|gb|ACG56906.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1] Length = 362 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 82/165 (49%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + S D LS L N + F + Y LS+ FDID FK+IND +GHP+GD Sbjct: 196 VYEKSTKDQLSNLYNRAKFNDIKNYEFARSRRYKIPLSLCMFDIDDFKKINDTYGHPIGD 255 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KVI L ++ R GGEEF + EA + L I N I I Sbjct: 256 KVIKELGKVVLDNVRKSDIPFRWGGEEFLILFTHTHLNEAKLACEKLLNKIRN--IEIKE 313 Query: 213 GPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 G +I T+S G+ E + + + I RAD+ALY AK+SG+NR+ Sbjct: 314 GDNIVKFTVSMGLTELKEEDDSLEKAIERADKALYYAKRSGKNRI 358 >gi|152997497|ref|YP_001342332.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150838421|gb|ABR72397.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 384 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 18/254 (7%) Query: 16 EKNLESFS--PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI----LVENL 69 E+N SF+ H F+ + ++ + V+FI+ + IGL + + L+ + Sbjct: 126 ERNWVSFAFLDHAFLATDVSWSTVLLWCVLFISAL---AIGLAWWLSGDTFRASGLISIV 182 Query: 70 SLVIISITISLLLGY---ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN 126 SL+I S +S + + +S L ++ +++ +D ++ L A L + Sbjct: 183 SLLIASHFVSSDIQFDALLSAQFLLWIWFLLMESHRMAYLDDMTKLPGRRALNEQLVGLS 242 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + +I D+D+FK+ ND FGH +GDKV+ ++ QL F +P R GGEEF G Sbjct: 243 KYYAIAMVDVDHFKKFNDTFGHDMGDKVLKSVAAQL-KQFSSPGRAFRFGGEEFTIVFRG 301 Query: 187 SSEQEAAILANDLRKIIENSQINI-----SSGPSIHITISAGIAERCHKEPISTIIYRAD 241 E + +R+ IE++ + + +++T S G+A E +++ RAD Sbjct: 302 KRLSEVDGILELIRENIESALVEVFDPKKKQETEVNVTASIGVAFAVVGESSDSVLKRAD 361 Query: 242 QALYVAKKSGRNRV 255 +ALY +KK GRNRV Sbjct: 362 EALYQSKKKGRNRV 375 >gi|88797380|ref|ZP_01112970.1| diguanylate cyclase (GGDEF domain) [Reinekea sp. MED297] gi|88780249|gb|EAR11434.1| diguanylate cyclase (GGDEF domain) [Reinekea sp. MED297] Length = 300 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 79/162 (48%), Gaps = 4/162 (2%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 N+ QLS D L+GL+N +A+ I S + ++ D+D+FKQIND +GH GD Sbjct: 137 NQYKQLSITDALTGLMNRTAYNQRIEQFVSDQQPYLLMLIDLDHFKQINDRYGHDAGDAA 196 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + L R+GGEEFA S +A +A LR IE I Sbjct: 197 LKQVGALLGSNSRNQEDCFRVGGEEFAIVLTQCSLSQAESIAERLRTAIETHAIRWQDAE 256 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + T+S G+ E T AD ALY AK++GRNRVV Sbjct: 257 -LSCTVSIGLCLSQTGESPQTTYRHADAALYEAKQNGRNRVV 297 >gi|194430437|ref|ZP_03062920.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171] gi|194411516|gb|EDX27855.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171] gi|323158566|gb|EFZ44580.1| cellulose synthesis regulatory protein [Escherichia coli E128010] Length = 558 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|324018838|gb|EGB88057.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3] gi|332093088|gb|EGI98152.1| cellulose synthesis regulatory protein [Shigella boydii 5216-82] Length = 558 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLYQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|323180792|gb|EFZ66332.1| cellulose synthesis regulatory protein [Escherichia coli 1180] Length = 558 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|209523455|ref|ZP_03272010.1| diguanylate cyclase [Arthrospira maxima CS-328] gi|209496197|gb|EDZ96497.1| diguanylate cyclase [Arthrospira maxima CS-328] Length = 396 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/181 (36%), Positives = 95/181 (52%), Gaps = 23/181 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQIN 143 +EL ++ ++ +L+ +D L+GLLN S L +Y+++ LSI+ DID+FK+IN Sbjct: 220 RELLVANKKLEKLATVDELTGLLNRRFLNSRLEQEIAYHQQMGFPLSIMLIDIDHFKKIN 279 Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 D FGH GD V +A L+++ + V R GGEEF S +A +A LR Sbjct: 280 DQFGHLAGDYVLQKVAKLTNKFLRVNDLAF---RYGGEEFMVLLPRSEISQALDMAEGLR 336 Query: 201 KIIENSQINISSGPS-IHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNR 254 I N PS IT S GI+E RC + ++ +AD ALY AK GRN+ Sbjct: 337 VSISQLYFNHPDIPSDFQITASFGISELTKDVRC----LDDLLKQADLALYQAKSQGRNQ 392 Query: 255 V 255 V Sbjct: 393 V 393 >gi|186476908|ref|YP_001858378.1| diguanylate cyclase [Burkholderia phymatum STM815] gi|184193367|gb|ACC71332.1| diguanylate cyclase [Burkholderia phymatum STM815] Length = 559 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 87/185 (47%), Gaps = 31/185 (16%) Query: 89 ILKELFISYNRI-SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 +L E S N + S +R D L+G L+ F I + E L + D+D+FK Sbjct: 367 VLAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIERARATGEPLCMAIADLDHFK 426 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 QIND FGH GD+ + D +GRLGGEEF IL D Sbjct: 427 QINDRFGHAAGDRALEHFVDTCRTALRGSDAIGRLGGEEF------------GILLPDTP 474 Query: 201 -----KIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +++E ++ + + P S+ +++S GI E ++ II RADQALY AK+ Sbjct: 475 LGTGLEVVERLRVRLKTMPSTKLPQSVGLSVSIGITELSAEDLPERIISRADQALYAAKQ 534 Query: 250 SGRNR 254 GR+R Sbjct: 535 GGRDR 539 >gi|74312495|ref|YP_310914.1| hypothetical protein SSON_2013 [Shigella sonnei Ss046] gi|114154900|sp|Q3Z0N3|YEDQ_SHISS RecName: Full=Cellulose synthesis regulatory protein gi|73855972|gb|AAZ88679.1| conserved hypothetical protein [Shigella sonnei Ss046] Length = 569 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 376 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 435 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 436 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 495 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 496 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 555 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 556 KQAGRNR-VCASD 567 >gi|28900331|ref|NP_799986.1| hypothetical protein VPA0476 [Vibrio parahaemolyticus RIMD 2210633] gi|153838993|ref|ZP_01991660.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus AQ3810] gi|260363666|ref|ZP_05776459.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus K5030] gi|260880900|ref|ZP_05893255.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus AN-5034] gi|260896042|ref|ZP_05904538.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus Peru-466] gi|260903094|ref|ZP_05911489.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus AQ4037] gi|28808642|dbj|BAC61819.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149747537|gb|EDM58473.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus AQ3810] gi|308087071|gb|EFO36766.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus Peru-466] gi|308091587|gb|EFO41282.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus AN-5034] gi|308107778|gb|EFO45318.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus AQ4037] gi|308114453|gb|EFO51993.1| diguanylate cyclase with GAF sensor [Vibrio parahaemolyticus K5030] gi|328470288|gb|EGF41199.1| hypothetical protein VP10329_05807 [Vibrio parahaemolyticus 10329] Length = 355 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 9/171 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L I ++ L+ D L+G+ N F +S + K + D+D FK++ND Sbjct: 172 LHIQIMKMEHLATTDDLTGIPNRREFMRQIEHRLSEFRTQGIKFHVAILDLDNFKKLNDK 231 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH GDK + ++ + + R+GGEEFA S QEA +R +E Sbjct: 232 FGHDAGDKSLIHAANTIKGHLRECDLLARVGGEEFAIVLRSRSSQEAMDTLETIRNALET 291 Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 + I SG + T S G+ + C + ++ RAD ALY AK++GRNRV Sbjct: 292 TTIRY-SGRDMTFTASIGVTQVCGLDDSFEPLVKRADLALYKAKETGRNRV 341 >gi|257866840|ref|ZP_05646493.1| diguanylate cyclase [Enterococcus casseliflavus EC30] gi|257872644|ref|ZP_05652297.1| diguanylate cyclase [Enterococcus casseliflavus EC10] gi|257800798|gb|EEV29826.1| diguanylate cyclase [Enterococcus casseliflavus EC30] gi|257806808|gb|EEV35630.1| diguanylate cyclase [Enterococcus casseliflavus EC10] Length = 238 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 121/247 (48%), Gaps = 33/247 (13%) Query: 30 YFSIF-FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY---- 84 +F+ F FSIF+ V + N LFY + + +SL I S+ I L Y Sbjct: 8 HFTYFRFSIFVTVVSPMLNALLFYRREISVWDV-------VSLGIGSVGIVSLWKYYLQN 60 Query: 85 -------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDID 137 I+ I++ +Y+ ++++ L+ ++ A ++L +V D+D Sbjct: 61 QKNFLEKINTKIIER---NYDELTKVKNFRSLNEDISKLALPEK-----DQLVVVMMDLD 112 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTP---MFVGRLGGEEFAAAALGSSEQEA 192 +FK+IND+ GH +G++ ++F S++L+ +P + V R GGEEF ++ Sbjct: 113 HFKRINDHHGHQIGNQALSFFSEKLMTFLYQKSPSHLVEVYRYGGEEFLVLFKENTSDVV 172 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 + + + N Q+ + + + + SAGI+E IS Y+ADQALY AK+ GR Sbjct: 173 KKIIEEFHLFLSNEQLKLETA-QLTLYFSAGISEAASALDISETFYQADQALYEAKRKGR 231 Query: 253 NRVVCFS 259 NR + FS Sbjct: 232 NRTIIFS 238 >gi|218554535|ref|YP_002387448.1| putative diguanylate cyclase [Escherichia coli IAI1] gi|218361303|emb|CAQ98887.1| putative diguanylate cyclase [Escherichia coli IAI1] Length = 564 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKMCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 551 KQAGRNR-VCASD 562 >gi|194015663|ref|ZP_03054279.1| putative diguanylate cyclase [Bacillus pumilus ATCC 7061] gi|194013067|gb|EDW22633.1| putative diguanylate cyclase [Bacillus pumilus ATCC 7061] Length = 529 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 6/163 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 + + + ID L+ + N S+FI L + +++ FDID+FKQIND GH +GD+ Sbjct: 354 EELERRAYIDGLTNIFNRSSFIERTQMILEEDAQDTAVMLFDIDFFKQINDTHGHHIGDE 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + + GR GGEEFA S +EA +A +R E S + Sbjct: 414 ALRHVVTICQQHLQMDDLFGRYGGEEFAICLPHHSFEEACHIAEQIRHSFEMSFFE-NDE 472 Query: 214 PSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRV 255 + +T S GIA + + T+++ ADQALY++K+ GRN + Sbjct: 473 EKVRVTASFGIAHTVYDPNVLETLLFEADQALYMSKRQGRNWI 515 >gi|325845181|ref|ZP_08168489.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1] gi|325488777|gb|EGC91178.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1] Length = 678 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 Y + + L+R D L+GL N + ++N++ ++ DID+FK+IND FGH VG Sbjct: 501 YKKANYLARYDGLTGLNNRVQVLKKGEQMLKSAHNDRCCVLMLDIDHFKKINDTFGHLVG 560 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI + L + + +GR GGEEF G +E +A + A +R+ + + Sbjct: 561 DEVIQKVGLLLTKKVNSNIHIGRYGGEEFVIFLQGYTESKALVFAEKIREELLTLSVKRI 620 Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 IT S G+ E I+ AD A+Y +K +GRN+V +S +EN Sbjct: 621 KEHFPSITASFGVYEYEQGSLSAEEGIHFADLAMYYSKTTGRNKVTPYSMLENK 674 >gi|260844354|ref|YP_003222132.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009] gi|257759501|dbj|BAI30998.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009] Length = 564 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 551 KQAGRNR-VCASD 562 >gi|167839926|ref|ZP_02466610.1| putative transmembrane transcriptional sensor regulator [Burkholderia thailandensis MSMB43] Length = 489 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 316 LARLAGTDSLTGLHNRRALDETLEREWRRAMGGARPLAILFVDIDHFKRYNDTYGHQVGD 375 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + PI+ I+ ADQALY AK GRNR+V Sbjct: 434 HEGSEVGFVTVSVGVAVWQPDGASAPPIAAIVEAADQALYQAKAGGRNRIV 484 >gi|163852769|ref|YP_001640812.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163664374|gb|ABY31741.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 667 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 14/182 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 +E+ + +LS D L+GL N A S L + ++ D+D+FK N Sbjct: 216 REVVQRGEELFRLSTTDVLTGLANRRAIDSVLQELWLANVNSGQAFGVILIDVDFFKLYN 275 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD +A L + + + +GR GGEEFAA S ++ A ++R+ Sbjct: 276 DRYGHQRGDSCLAALGEAMRGAADKRRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQA 335 Query: 203 IENSQINISS--GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +E QI ++ P H+T+S G A+ +P I AD ALYVAK+ GRNR Sbjct: 336 VEALQIPHAARRDPLSHVTVSIGAAFSADVADDKP-ERAISAADDALYVAKEEGRNRARI 394 Query: 258 FS 259 F+ Sbjct: 395 FN 396 >gi|56461440|ref|YP_156721.1| signal protein [Idiomarina loihiensis L2TR] gi|56180450|gb|AAV83172.1| Signaling protein with membrane-bound sensor domain and GGDEF domain [Idiomarina loihiensis L2TR] Length = 398 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 90/180 (50%), Gaps = 22/180 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 +++ +L+ ID L+GL A +S L ++ ++ D+D+FK+ ND +GH VGD+V+ Sbjct: 221 DQMLKLAYIDELTGLPQRRALMSQLQHLRKRSAVCMLDVDHFKKFNDRYGHEVGDQVLRL 280 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SSGP- 214 L L G + R GGEEF + E++ L +R + N + + S P Sbjct: 281 LGRILKEHGGFKAY--RYGGEEFTLVFFHNDEEKLKNLLESVRSQVANYPLKLREPSRPE 338 Query: 215 ----------------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VC 257 ++ +TIS G + + +I+ RAD+ LY AKK+GRNRV VC Sbjct: 339 SKTKGKEARGKKEKSKTVKVTISLGATVKEPDDTADSILKRADENLYSAKKAGRNRVSVC 398 >gi|308070120|ref|YP_003871725.1| response regulator containing a CheY-like receiver domain and a GGDEF domain [Paenibacillus polymyxa E681] gi|305859399|gb|ADM71187.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Paenibacillus polymyxa E681] Length = 299 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 12/157 (7%) Query: 107 DCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F ++SL S+ E S++ DID FK IND +GHPVGD V+ L+ Sbjct: 140 DPLTGLKNRRYFQDQLLASLMSFRESGVSFSLLIIDIDRFKSINDTYGHPVGDLVLTNLA 199 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L + V R GGEEF + ++EA A R ++ ++ G IT Sbjct: 200 ELLQSMSRDRDIVARYGGEEFVIILPDNDQEEAIHTAERYR----STTASMDWG-EYAIT 254 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+A ++ TI+++AD ALY +K GRNRV Sbjct: 255 VSIGVATVTQEDTEQTIVHQADLALYASKSGGRNRVT 291 >gi|170737998|ref|YP_001779258.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] gi|169820186|gb|ACA94768.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] Length = 399 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 17/177 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + + Q SR D L+ L N F I G ++++ FD+D FK+IND FGH Sbjct: 218 HGELLQESRTDYLTRLGNRRRFFEEGERAIHEHGIRGLPVTLLAFDLDQFKRINDRFGHK 277 Query: 150 VGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD+V+ +D + VV T + + R+GGEEFAA G + A+ +A + + N Sbjct: 278 TGDEVLKSFADTVRSVVDAETSVVLARIGGEEFAALLPGYDTRRASTVA----ETVANRF 333 Query: 208 INISSGPS---IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 IS G I T+S G+AE H+ ++ ++ ADQALY AK G NR+V +D Sbjct: 334 AAISHGADDNRIRATVSIGLAESDHETASLTHLLSIADQALYRAKSLGGNRLVHATD 390 >gi|91776259|ref|YP_546015.1| diguanylate cyclase [Methylobacillus flagellatus KT] gi|91710246|gb|ABE50174.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT] Length = 487 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 10/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPV 150 +++ ++ D L+GL N AF I + NE+ L+ + D+D+FK IND GH Sbjct: 316 DKLETMATTDTLTGLPNRRAFDVVIDVFLNENERARSTLAFILLDVDHFKSINDRLGHLG 375 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ + F+ R GGEEF A E A +LA +R IEN I Sbjct: 376 GDYVLTVVARIIKGNTRAADFICRWGGEEFLIAIKDCDEHNALLLAEKIRSAIENELIAY 435 Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255 G + IT S G+ + E + ++ RAD+A+Y AK +GRN+V Sbjct: 436 -QGSQVAITASLGVGVGVARAGEKLEPVLERADKAMYAAKAAGRNQV 481 >gi|83645901|ref|YP_434336.1| response regulator [Hahella chejuensis KCTC 2396] gi|83633944|gb|ABC29911.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 555 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 11/180 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143 KEL + +++ D L+GL N F + L Y L++V DID+FK IN Sbjct: 367 KELDKENLELREIAARDSLTGLYNRRFFQNRLNYEFNRAKRYGSGLTLVLLDIDHFKIIN 426 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GHP GD+V+ LS L + + R+GGEEF ++ + LR I Sbjct: 427 DTKGHPAGDEVLIRLSSFLSQSLRSSDLIARIGGEEFCIILPEHLDEGVKTFIDRLR--I 484 Query: 204 ENSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 E S ++ G + +T S G+AE R I+ +AD+ALY AK++GRNR+V S + Sbjct: 485 EISLLDFQHEGEAFQVTCSFGVAEYRNESSHPKDILKKADEALYQAKRTGRNRIVYESAV 544 >gi|88799529|ref|ZP_01115106.1| GGDEF domain protein [Reinekea sp. MED297] gi|88777839|gb|EAR09037.1| GGDEF domain protein [Reinekea sp. MED297] Length = 377 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 15/175 (8%) Query: 96 SYNRISQLSR-------IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 SY ++++L + D L+ LLN + N+ ++ + D+D+FK+ Sbjct: 192 SYQKLNELKQDFERQASQDTLTHLLNRRGMRERIRYEVRRSQRNNQPITFILADLDHFKE 251 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND++GH GD V+ +S L + R GGEEF ++ ++A LA +R Sbjct: 252 INDHYGHDTGDTVLIQVSQLLQDSVRQQDSIARWGGEEFLFLLPETNARQAMQLAEKIRS 311 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IIE+ +N S P + T+S GIAE E + I AD LY AK GRN VV Sbjct: 312 IIESHPLN-SDQPPLTTTMSFGIAEMLDLENHQSTIAEADNRLYQAKSQGRNCVV 365 >gi|15597967|ref|NP_251461.1| hypothetical protein PA2771 [Pseudomonas aeruginosa PAO1] gi|107102313|ref|ZP_01366231.1| hypothetical protein PaerPA_01003372 [Pseudomonas aeruginosa PACS2] gi|254241229|ref|ZP_04934551.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|9948852|gb|AAG06159.1|AE004705_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126194607|gb|EAZ58670.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 341 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 15/203 (7%) Query: 65 LVENLSLVIISITISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAF-- 118 L E L +SI L GY+ L E L +R + S +D L+ L N + F Sbjct: 141 LREGRQLNRLSI---LAEGYLQLRSLTEHTRFLRQEIDREQRKSLLDPLTQLWNRAGFHA 197 Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 + + ++++ I++ DID+FK+IND GH GD V+ + +L + Sbjct: 198 LHQHELELARASDQRIGIIYSDIDHFKRINDTLGHRAGDSVLREAASRLRAALRPEDLLA 257 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF A E ++AN +R+++E + I+ +G S+ +TISAG E Sbjct: 258 RFGGEEFVAMVRVRETTELTMIANRIRELMEATPIDC-AGTSVPVTISAGCTLAGSGEEP 316 Query: 234 STIIYRADQALYVAKKSGRNRVV 256 + RAD ALY AK++GRNRVV Sbjct: 317 ERALARADAALYDAKRAGRNRVV 339 >gi|262165010|ref|ZP_06032748.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio mimicus VM223] gi|262027390|gb|EEY46057.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio mimicus VM223] Length = 461 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 90/163 (55%), Gaps = 6/163 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++++ LS+ D L+G+ N F + L +++ L+++ FDID FK+IND +GH GD Sbjct: 296 HKLTLLSQTDSLTGIHNRHYFFNQLTKERDHSKSLTLMVFDIDDFKRINDTYGHGAGDSA 355 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I ++ + M R+GGEEFA G + + + +LA + + I ++ ISS Sbjct: 356 ICLITACVRSALEPDMEFARIGGEEFAILVHGKTAEASQLLAELICQRIAEKELMISSNT 415 Query: 215 SIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256 + +TIS G A + P S ++ AD +Y AK G+N+VV Sbjct: 416 FVTLTISLGCA--FYPSPTESPTLHMADSLMYEAKGKGKNQVV 456 >gi|296137225|ref|YP_003644467.1| diguanylate cyclase [Thiomonas intermedia K12] gi|295797347|gb|ADG32137.1| diguanylate cyclase [Thiomonas intermedia K12] Length = 400 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/182 (34%), Positives = 91/182 (50%), Gaps = 13/182 (7%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFF 134 L I G +L + R+ L+ D L+GLLN A L SY K ++ Sbjct: 208 LSLIYGGMLMARLV--RRLHDLALKDPLTGLLNRRAAQQLLEREWASYRHKDLPFCVLMI 265 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK+IND +GH VGD+V+ L+ L V R+GGEEF + A Sbjct: 266 DIDHFKRINDEYGHAVGDRVLTGLATLLREGTRPTDHVARMGGEEFLVFLPQTELPSAQA 325 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253 A LR +++ + + ITIS G+A+ ++ ++ RAD+ALY AK +GRN Sbjct: 326 AAERLR---QHTAAWVLQPEELSITISIGVAQAAAEDSAFDDLLIRADRALYAAKSAGRN 382 Query: 254 RV 255 RV Sbjct: 383 RV 384 >gi|86159891|ref|YP_466676.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776402|gb|ABC83239.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-C] Length = 351 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 17/186 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 ++ +L + R+ + + D L+GL N AF L Y++ +S++ D+D+FK Sbjct: 155 TLQDQLRETQRRLREQTLTDDLTGLKNRRAFDERLQEEFRRAHRYSDPVSLIMIDLDHFK 214 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND +GHP GD V+ S+QL P R GGEEFA + A +A + Sbjct: 215 LVNDRYGHPFGDLVLRGASEQLRASTRDPDICARYGGEEFAVILPKTHLSGALAVAERIW 274 Query: 201 KIIENSQINISSG-----PSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGR 252 K + + +G +I +T S GIA K+ P + + Y AD+ALY AKK+GR Sbjct: 275 KELSARSYPVPAGSAEPDTAIQVTASMGIAFYPSKDIGSPEALVRY-ADEALYQAKKAGR 333 Query: 253 NRVVCF 258 N +C Sbjct: 334 N-TICL 338 >gi|191169238|ref|ZP_03030991.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A] gi|190900716|gb|EDV60512.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A] Length = 558 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|309795937|ref|ZP_07690350.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] gi|308120387|gb|EFO57649.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] Length = 558 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|293374839|ref|ZP_06621141.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis PC909] gi|292646508|gb|EFF64516.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis PC909] Length = 634 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 27/222 (12%) Query: 45 IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104 I N ++FY + L IL + II+++I ++LG SI+ + + R+ + Sbjct: 431 IGNEYIFYAIQSHQNDL--ILQRTIQYRIINMSIFMVLG----SIIIYGILKFVRLVSQN 484 Query: 105 RIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 R D L+ L N F G Y SI+ FDID FK+IND +GH VGD V+ Sbjct: 485 RKDHLTNLYNRRYFDKIYLALKKRKKGHY----SIILFDIDDFKKINDRYGHDVGDAVLM 540 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ + G + R GGEEF ++ SE+ LA +R+ + + ++ P+I Sbjct: 541 SLAKTVKGELGKREYGFRYGGEEFVILSVDKSEEHVLALAESIREKVAKTIVS----PNI 596 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 TIS GIA R H+ + T AD+ LY +K G+N + Sbjct: 597 QFTISLGIAHSRQHEFSLKT----ADENLYHSKAQGKNTITT 634 >gi|170019712|ref|YP_001724666.1| diguanylate cyclase [Escherichia coli ATCC 8739] gi|169754640|gb|ACA77339.1| diguanylate cyclase [Escherichia coli ATCC 8739] Length = 564 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKMCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 551 KQAGRNR-VCASD 562 >gi|193066643|ref|ZP_03047678.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22] gi|192925718|gb|EDV80377.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22] Length = 558 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|323168923|gb|EFZ54603.1| cellulose synthesis regulatory protein [Shigella sonnei 53G] Length = 558 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFERLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|301327744|ref|ZP_07220948.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] gi|300845706|gb|EFK73466.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] gi|320198646|gb|EFW73246.1| hypothetical protein ECoL_04070 [Escherichia coli EC4100B] Length = 558 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|264677962|ref|YP_003277869.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni CNB-2] gi|262208475|gb|ACY32573.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni CNB-2] Length = 384 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 17/239 (7%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVII---SITISLLLGYISGSIL 90 F+ + T+I IA + ++++G + ++ + L++ ++ + S+L+ Y G Sbjct: 145 FWMTWSCTLIAIA-LAVYWVGPQMRMTTDTLIGQFLTVGVMLGAVVRCSVLVTYFRGMQY 203 Query: 91 K------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137 + +L ++ +I L R D L+GL N + L + I DID Sbjct: 204 RLSASNEKLALALKQIENLVRNDDLTGLANRRGVMDRLQQCIHAAQRRDAPFCIALLDID 263 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FKQ+ND +GH GD+V+ L GR GGEEF + +A +L Sbjct: 264 FFKQVNDRYGHEGGDQVLRAFGQLLSSQIRATDCAGRYGGEEFLLVLCDTPLAQAGVLLE 323 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R+ E + +T + G+ + E +I RAD A+Y K +GRNRVV Sbjct: 324 RIRESTEALPWTQLVHKDLRVTCTLGVTQYRQGETAEALISRADAAMYRGKAAGRNRVV 382 >gi|220926138|ref|YP_002501440.1| diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans ORS 2060] gi|219950745|gb|ACL61137.1| diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans ORS 2060] Length = 665 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 130/286 (45%), Gaps = 35/286 (12%) Query: 8 FLSIWLCHEKNLESFSPH--TFMIYFSIFFSI----------------FIATVIFIANIF 49 L+++ H N+ + + FM+ ++FF+ F++T++F F Sbjct: 115 LLTVFSAHSANVSYYLAYGTVFMMVSNLFFNFRFRVALLASGLITVIFFVSTLLFFQFPF 174 Query: 50 LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-KELFISYNRISQLSRIDC 108 +Y+ + Y L ++L ++ + + L + I K+ + +LS D Sbjct: 175 QYYVAIGSLYVLSFVLTIFINWKLNLERYRVFLNSMRAEIRQKQATERGEELLKLSTTDA 234 Query: 109 LSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDK---VIAFL 158 L+GLLN A L G++ E+ ++ DIDYFK ND +GH GD +A + Sbjct: 235 LTGLLNRRAIDQLLSEFWGAWKERSAAFGVILIDIDYFKMFNDYYGHQKGDACLVAVARV 294 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI----NISSGP 214 +++ G +GR GGEEF L +E + A +A D+R I+ +I + Sbjct: 295 MEEVAARHGCR--IGRFGGEEFIILLLSETEAQIAAVAEDVRGSIQVLKIPHEARLDHLA 352 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ ++I A + I+ AD+ALY+AK S RN V F + Sbjct: 353 TVTVSIGAAFCRGIAADKPERIVTGADRALYLAKDSNRNCVKLFDE 398 >gi|114319852|ref|YP_741535.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii MLHE-1] gi|114226246|gb|ABI56045.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii MLHE-1] Length = 686 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +L +S+V FD+D+FK++ND GH GD+V+ L+ Sbjct: 529 DGLTGLYNRRHTQRALERELRLAARTGHPVSVVLFDLDHFKRVNDTHGHNAGDQVLRQLA 588 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + VGR GGEEF G+ E A LA LR + ++ I +T Sbjct: 589 GLVTERVRDTDIVGRWGGEEFLLVLPGTDETGAGQLAEVLRAYVAEARFPIPD----PVT 644 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IS G A+ E + R DQALY AK +GRNR Sbjct: 645 ISLGYAQAGADEGADALFKRVDQALYAAKANGRNRAQA 682 >gi|159900729|ref|YP_001546976.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] gi|159893768|gb|ABX06848.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] Length = 717 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 12/168 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 Y QL+ D L+GL N F++ L YN LS++ DIDYFKQ NDN+GH Sbjct: 553 YTITQQLAITDGLTGLFNQRHFMTMLDREVALAYRYNYPLSLLALDIDYFKQYNDNYGHL 612 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VG+ ++ + + V R GGEEF + + A +LA LR + ++ Sbjct: 613 VGNVLLRDFARLICENVRDVDIVSRNGGEEFTIILPKTDQAGAVLLAERLR--VRTAEHL 670 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G HIT+S G+A + T+ +ADQALY AK SGRN V+ Sbjct: 671 FGQG---HITVSVGVATLNNNWDAHTLHDQADQALYRAKNSGRNLVIS 715 >gi|229507700|ref|ZP_04397205.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229512105|ref|ZP_04401584.1| GGDEF family protein [Vibrio cholerae B33] gi|229519240|ref|ZP_04408683.1| GGDEF family protein [Vibrio cholerae RC9] gi|229524220|ref|ZP_04413625.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229528771|ref|ZP_04418161.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|229607204|ref|YP_002877852.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|229332545|gb|EEN98031.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|229337801|gb|EEO02818.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229343929|gb|EEO08904.1| GGDEF family protein [Vibrio cholerae RC9] gi|229352070|gb|EEO17011.1| GGDEF family protein [Vibrio cholerae B33] gi|229355205|gb|EEO20126.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229369859|gb|ACQ60282.1| GGDEF family protein [Vibrio cholerae MJ-1236] Length = 495 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N F IS + LS+ D+D+FKQ+NDN+GHP Sbjct: 334 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 393 Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD +V+A + V GT + R GGEEF ++QEA +R I Sbjct: 394 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 449 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S P +T+S G+ + E + + RADQA+Y AK GRN+VV Sbjct: 450 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 493 >gi|326790479|ref|YP_004308300.1| diguanylate cyclase with GAF sensor [Clostridium lentocellum DSM 5427] gi|326541243|gb|ADZ83102.1| diguanylate cyclase with GAF sensor [Clostridium lentocellum DSM 5427] Length = 707 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 87/178 (48%), Gaps = 10/178 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISS---LGSYNEKLS----IVFFDIDYFKQINDNFGHP 149 Y++ L D L+GLLN A + L N K ++ D DYFKQ+ND +GH Sbjct: 531 YHQAEYLGMHDSLTGLLNRGALLKQGEILFKKNHKQHKSTVVMMLDTDYFKQVNDRYGHQ 590 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD+V+ + L V +VGR GGEEF SE+E + ++K + S Sbjct: 591 LGDEVLKKIGKILKKVVRKQDYVGRYGGEEFLVILDDLSEKEVVKVCQRIKKALSESCFE 650 Query: 210 ISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 I +T+S G C++ + S I AD ALY AK GRNR++ + EN + Sbjct: 651 TKKDTKIKVTVSGGFY-ICNEYTLNFSDAIQFADHALYRAKLLGRNRMISYCLGENES 707 >gi|323703343|ref|ZP_08114993.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574] gi|323531706|gb|EGB21595.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574] Length = 353 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 22/201 (10%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125 N+ L + +I +SL L +IL + ++ LS D L+ L NH F L Sbjct: 159 NMILELFTIQVSLAL---ENAILNK------KLEALSITDALTRLYNHRYFAEVLQKQIT 209 Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++LS++ D+D FK+ ND++GHP GD V+ + + R GGEEF Sbjct: 210 VSRQTKKELSLIMVDMDNFKEYNDSYGHPAGDLVLKLMGKIFMEHIRPGDVAARYGGEEF 269 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYR 239 A G+ ++ LA +R +E+++ P +T S GIA H + + ++ Sbjct: 270 ALILPGTPLKDGLALAEKIRLAVESTKF-----PHRLVTASFGIANFPTHCDNPADLLEL 324 Query: 240 ADQALYVAKKSGRNRVVCFSD 260 ADQALY AK GRN+V + D Sbjct: 325 ADQALYAAKTGGRNQVFIYGD 345 >gi|293446335|ref|ZP_06662757.1| cellulose synthesis regulatory protein [Escherichia coli B088] gi|332278877|ref|ZP_08391290.1| cellulose synthesis regulatory protein [Shigella sp. D9] gi|291323165|gb|EFE62593.1| cellulose synthesis regulatory protein [Escherichia coli B088] gi|332101229|gb|EGJ04575.1| cellulose synthesis regulatory protein [Shigella sp. D9] Length = 569 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 376 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 435 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 436 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 495 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 496 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 555 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 556 KQAGRNR-VCASD 567 >gi|284044593|ref|YP_003394933.1| response regulator receiver modulated diguanylate cyclase [Conexibacter woesei DSM 14684] gi|283948814|gb|ADB51558.1| response regulator receiver modulated diguanylate cyclase [Conexibacter woesei DSM 14684] Length = 676 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 8/162 (4%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+G+ N S+ L + E L++ D+D FK +ND +GH +GD V+ Sbjct: 377 LAETDALTGVANRSSSTQKLERLVQLAHRFGEALTLAIIDLDEFKAVNDRYGHALGDAVL 436 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + D L F +GR GGEEF G + ++A DL + G Sbjct: 437 QRMGDVLRQAFRGEDVIGRWGGEEFVVGMYGMTREDAQQRLLDLLAEFTSVPFAADDGEP 496 Query: 216 IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ SAG+A+R E I+ + AD ALY AK++GR+RV+ Sbjct: 497 FTVSFSAGVAQRGVDGESITALHRAADAALYRAKEAGRSRVL 538 >gi|229168789|ref|ZP_04296508.1| Sensory box/GGDEF family protein [Bacillus cereus AH621] gi|228614637|gb|EEK71743.1| Sensory box/GGDEF family protein [Bacillus cereus AH621] Length = 430 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 104/219 (47%), Gaps = 33/219 (15%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108 F F + TP L E+LS I+ T + EL Y +L+ ID Sbjct: 231 FTFLLRATP-------LPEDLSRFIVKCTE-----------ITELDEIYQEQERLAMIDS 272 Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ + N F L + +EK++++ FDID FK +ND +GH GD + L+D Sbjct: 273 LTEIYNRLKFQQILETEWENVLRNDEKVALILFDIDNFKSVNDTYGHDFGDLALVQLADL 332 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + R GGEEF + E+EA +A LR IE Q SG S +T S Sbjct: 333 MKSKVEDQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF---SGIS-KLTAS 388 Query: 222 AGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258 G+A H+ I+ ++ RAD ALY AKK+G+N+V + Sbjct: 389 FGVA--LHENGITKEELMQRADIALYEAKKNGKNQVCIY 425 >gi|78062557|ref|YP_372465.1| diguanylate cyclase [Burkholderia sp. 383] gi|77970442|gb|ABB11821.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383] Length = 602 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 17/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D L+ L N AF + ++ + + +++ D+D+FK +ND +GHPVGD Sbjct: 435 LHRMATTDHLTQLSNRHAFMRQSEAALRAVRTTGQAAAVLMLDLDHFKALNDRWGHPVGD 494 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + + L+ G VGR+GGEEFA G+ A A +++ +++ Sbjct: 495 RALRHFARLLLAETGPDGIVGRVGGEEFAIVLPGADLDRALAFAQRVQQRAMQARLTHED 554 Query: 213 GPSIHITISAGI-AERCHK----EPISTIIYRADQALYVAKKSGRNRVVCF 258 P + +T+S GI A R +P+S RAD+ALY+AK+ GRNR+ + Sbjct: 555 QP-VTLTVSIGIDAMRASDFGAYQPLS----RADKALYLAKERGRNRIEVY 600 >gi|330972150|gb|EGH72216.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 690 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ L + EK S++ D+D+FK+IND +GH GDKV Sbjct: 528 QKALIDPLTGLPNRAAWGERLEREMARWHEEKNSLLVCILDLDHFKRINDGYGHLAGDKV 587 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ L F+ R GGEEF + L ++LR +E+ + G Sbjct: 588 LKIVANVLGKRLRADDFMARFGGEEFVMLLPATPPATGLKLLDELRAAVESCPFHF-KGE 646 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNR+ Sbjct: 647 RVTITVSIGMTAFRPSERSDTAIKRADQALYKAKENGRNRI 687 >gi|262173736|ref|ZP_06041413.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio mimicus MB-451] gi|261891094|gb|EEY37081.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio mimicus MB-451] Length = 461 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 90/163 (55%), Gaps = 6/163 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++++ LS+ D L+G+ N F + L +++ L+++ FDID FK+IND +GH GD Sbjct: 296 HKLTLLSQTDSLTGIHNRHYFFNQLTKERDHSKSLTLMVFDIDDFKRINDTYGHGAGDSA 355 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I ++ + M R+GGEEFA G + + + +LA + + I ++ ISS Sbjct: 356 ICLITACVRSALEPDMEFARIGGEEFAILVHGKTAEASQLLAELICQRIAEKELMISSNT 415 Query: 215 SIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256 + +TIS G A + P S ++ AD +Y AK G+N+VV Sbjct: 416 FVTLTISLGCA--FYPSPTESPTLHMADSLMYEAKGKGKNQVV 456 >gi|297568215|ref|YP_003689559.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] gi|296924130|gb|ADH84940.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] Length = 519 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 14/168 (8%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 QL+ D L+GL N F L + LS++ FDID+FK++ND +GH GD Sbjct: 348 DQLAGTDQLTGLNNRRRFKELLDQELIRYRRIPKPLSLLIFDIDHFKRVNDTYGHETGDL 407 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ ++ L R GGEEF ++ + A LA LR+ IE Sbjct: 408 VLKEMAQLLQATVRRTDTPARWGGEEFLVLLPATTAEAAMALAEKLRQAIEEHDF----- 462 Query: 214 PSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P + +T S G+A ++ S ++ R D+ALY AK+ GRNRVV ++ Sbjct: 463 PRVGRVTASFGVAAFHDGEQEESALLRRVDKALYQAKRQGRNRVVNWA 510 >gi|260868548|ref|YP_003234950.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128] gi|257764904|dbj|BAI36399.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128] Length = 564 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 551 KQAGRNR-VCASD 562 >gi|256017851|ref|ZP_05431716.1| diguanylate cyclase [Shigella sp. D9] Length = 558 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|170720802|ref|YP_001748490.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida W619] gi|169758805|gb|ACA72121.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida W619] Length = 796 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 14/206 (6%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P GL ++ E + + +L GY++ + +L + LS D L+G+ N Sbjct: 593 PKSGLRWVRGE-ATPEVGEDGCTLWHGYLTD--ISDLKGVEEDLRTLSVTDALTGIHNRR 649 Query: 117 AFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F L + +++L+++ DID+FK+IND +GH VGD V+ L ++ Sbjct: 650 YFQERLKAELDRAQRDDQELAVIMLDIDHFKRINDQYGHAVGDHVLRSLCQRIGQRLRRT 709 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 RLGGEEF GS+ ++A +LA +L + + N ++ +T S G+A Sbjct: 710 DVFCRLGGEEFMVLCPGSNAEQARLLAMELWQGVRNLPVDGVG----KVTASFGVAGWRP 765 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 E ++ RAD +Y AK++GR+RV Sbjct: 766 GEGADALLLRADAGVYAAKQAGRDRV 791 >gi|313681484|ref|YP_004059222.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM 16994] gi|313154344|gb|ADR33022.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM 16994] Length = 458 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 10/173 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 + EL+ N + Q + D L+G+ N F I++ N LS+V FD+D FK + Sbjct: 284 VDELYSMTNTLEQKAYKDKLTGINNRENFEDIFALEIATAKQNNIPLSLVIFDVDNFKLV 343 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD ++ L + R GGEEF + A LA +LRK+ Sbjct: 344 NDTYGHQAGDTILIDLVKLIEDNIKNGDIFARWGGEEFVILTPSTDINGACNLAENLRKL 403 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + Q++ S +T+S G+A+ + T+ +AD ALY AKK+GRNRV Sbjct: 404 V---QLHPFSYVENQMTLSFGVAQLSDDDNKKTLFEKADGALYEAKKNGRNRV 453 >gi|238794811|ref|ZP_04638413.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909] gi|238725891|gb|EEQ17443.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909] Length = 395 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 101/180 (56%), Gaps = 22/180 (12%) Query: 89 ILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSLG------SYNEKLSIVFFD 135 +L+EL + + ++Q + D L+GL N + F L + +E+L+++F D Sbjct: 200 LLEELEVWQDHLTQENDFLAHRAAHDSLTGLANRAFFEGRLSRTLSDCAADEQLAVLFID 259 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAA 193 D+FK+INDN+GH GD V+ ++D++ + V RLGG+EFA A + +++ + Sbjct: 260 GDHFKEINDNYGHAAGDLVLTAIADRIRSLLRETDLVARLGGDEFAVLLAPIHNTD-DVL 318 Query: 194 ILANDLRKIIE--NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250 +AN KII+ N I++ G I +IS GIA H + ++ RAD+A+Y AKKS Sbjct: 319 TIAN---KIIDSMNQPIDLVDGSEITTSISIGIAIYPDHAQTPEDLLQRADEAMYQAKKS 375 >gi|217976613|ref|YP_002360760.1| response regulator receiver modulated diguanylate cyclase [Methylocella silvestris BL2] gi|217501989|gb|ACK49398.1| response regulator receiver modulated diguanylate cyclase [Methylocella silvestris BL2] Length = 469 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 11/162 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ ID L+GL N F S E+ LS++ FDID+FK +ND GH GD++ Sbjct: 290 EMAVIDALTGLHNRRFFDGVFPSLMEEAKRKARPLSVMMFDIDHFKSVNDAHGHEAGDRL 349 Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + L+ ++ +V G+ MF RL G+EF + A +A +R + + I Sbjct: 350 LQGLAGRVKGLVRGSDMFC-RLSGDEFVILMPDTRVDIGAKVAERVRAGVAGAAFPIGKA 408 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S+ TIS G+AE H P ++ AD+ALY +K++GRNRV Sbjct: 409 HSLSTTISIGLAESAHAGP--DLLREADRALYRSKEAGRNRV 448 >gi|152999836|ref|YP_001365517.1| diguanylate cyclase [Shewanella baltica OS185] gi|151364454|gb|ABS07454.1| diguanylate cyclase [Shewanella baltica OS185] Length = 581 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 11/176 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146 + + +++R+D L+G+LN A F+ + + ++ FD+D+FK+IND+F Sbjct: 389 MQKRKFMRMARMDALTGILNRGAGQELGENLFVQATARGGD-FCVILFDLDFFKRINDSF 447 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD + + D L R+GGEEFA + E++ +A R IE Sbjct: 448 GHGTGDWALKKVVDSLKSHIRNGDVFARIGGEEFAILLPYADEEKGMEVAEQCRARIEAI 507 Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261 SG IT S G++ + + + +RAD ALY AK +GRN VV +SDI Sbjct: 508 DTQ-HSGHKFVITASFGVSGLMADDLSLDPLFHRADMALYAAKANGRNAVVRYSDI 562 >gi|114778329|ref|ZP_01453188.1| Signaling protein with a GGDEF domain [Mariprofundus ferrooxydans PV-1] gi|114551431|gb|EAU53987.1| Signaling protein with a GGDEF domain [Mariprofundus ferrooxydans PV-1] Length = 308 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 8/165 (4%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ +D L+G N ++ L E SI D+D+FKQ+ND +GH +GD V+ Sbjct: 140 LNNLDPLTGAYNRFGMMAFLHEQQELVARGVNSCSIAMLDLDFFKQVNDQYGHKMGDHVL 199 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L+ + R GGEEF A ++ + A ++A +RK +E++ I I P Sbjct: 200 TSIASTLLKGLRPYDKLFRYGGEEFVAVFPNTAVESALLVAERVRKYVEDTIIEIDKLP- 258 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + IT+S GIA + + +AD A+Y AK++GRN+V + + Sbjct: 259 VRITVSVGIAAIDANTSVEISVEQADIAMYTAKQNGRNQVKLWEN 303 >gi|109898002|ref|YP_661257.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109700283|gb|ABG40203.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 560 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 78/128 (60%), Gaps = 4/128 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L +++ D+DYFK+INDNFGH GD+V+ ++ + VGRLGG+EF A A Sbjct: 432 LCLLYIDLDYFKEINDNFGHKAGDQVLRIMAKIIRKQMRDQDAVGRLGGDEFVALAQFED 491 Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKE-PISTIIYRADQALYV 246 E+++ IL + K ++N INIS+ + I +T S G E +S ++ +ADQA+Y+ Sbjct: 492 ERQSEILRERVTKRLKN--INISTDSAQIRVTASVGCVVFSDNEISVSEMLQKADQAMYM 549 Query: 247 AKKSGRNR 254 +K+ +++ Sbjct: 550 SKRENQDK 557 >gi|325845416|ref|ZP_08168711.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1] gi|325488566|gb|EGC90980.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1] Length = 634 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 27/222 (12%) Query: 45 IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104 I N ++FY + L IL + II+++I ++LG SI+ + + R+ + Sbjct: 431 IGNEYIFYAIQSHQNDL--ILQRTIQYRIINMSIFMVLG----SIIIYGILKFVRLVSQN 484 Query: 105 RIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 R D L+ L N F G Y SI+ FDID FK+IND +GH VGD V+ Sbjct: 485 RKDHLTNLYNRRYFDKIYLALKKRKKGHY----SIILFDIDDFKKINDRYGHDVGDAVLM 540 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ + G + R GGEEF ++ SE+ LA +R+ + + ++ P+I Sbjct: 541 SLAKTVKGELGKREYGFRYGGEEFVILSVDKSEEHVLALAESIREKVAKTIVS----PNI 596 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 TIS GIA R H+ + T AD+ LY +K G+N + Sbjct: 597 QFTISLGIAHSRQHEFSLKT----ADENLYHSKAQGKNTITT 634 >gi|307545291|ref|YP_003897770.1| diguanylate cyclase [Halomonas elongata DSM 2581] gi|307217315|emb|CBV42585.1| diguanylate cyclase [Halomonas elongata DSM 2581] Length = 572 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 116/253 (45%), Gaps = 38/253 (15%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-- 91 FFS+ + T + +A+ GL P++ + + L V+ +TISLL + LK Sbjct: 331 FFSLLLVTDMAVAH------GLLPWFRVP-VSSGALIFVLALVTISLLEYNRTHQELKRL 383 Query: 92 -------------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131 EL R+ S D L+GL N F L + L++ Sbjct: 384 NLRLEQEVAQRTGELQTLVKRLESFSYTDPLTGLHNRRYFTKLLEQSTAQAQRQGYPLTL 443 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA----AALGS 187 + DID+FKQIND +GH GD V+A ++ L F V RLGGEEFA + Sbjct: 444 LMIDIDHFKQINDRYGHEAGDSVLAAIAHCLSQYFREADVVCRLGGEEFAVLMHNTETSA 503 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYV 246 ++ A L L +++ Q I GP +TIS GIA H ++ AD+ALY Sbjct: 504 VKERAEALLKTLACTVQHHQ-QIPLGP---VTISCGIASYPLHAVNPQALVGLADKALYN 559 Query: 247 AKKSGRNRVVCFS 259 AK +GR R+ ++ Sbjct: 560 AKHAGRARIHVYA 572 >gi|293376697|ref|ZP_06622920.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis PC909] gi|292644654|gb|EFF62741.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis PC909] Length = 703 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 Y + + L+R D L+GL N + ++N++ ++ DID+FK+IND FGH VG Sbjct: 526 YKKANYLARYDGLTGLNNRVQVLKKGEQMLKSAHNDRCCVLMLDIDHFKKINDTFGHLVG 585 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI + L + + +GR GGEEF G +E +A + A +R+ + + Sbjct: 586 DEVIQKVGLLLTKKVNSNIHIGRYGGEEFVIFLQGYTESKALVFAEKIREELLTLSVKRI 645 Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 IT S G+ E I+ AD A+Y +K +GRN+V +S +EN Sbjct: 646 KEHFPSITASFGVYEYEQGSLSAEEGIHFADLAMYYSKTTGRNKVTPYSMLENK 699 >gi|258624539|ref|ZP_05719481.1| extracellular solute-binding protein, family 3/GGDEF domain protein [Vibrio mimicus VM603] gi|258583192|gb|EEW07999.1| extracellular solute-binding protein, family 3/GGDEF domain protein [Vibrio mimicus VM603] Length = 463 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 4/162 (2%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++++ LS+ D L+G+ N F + L +++ L+++ FDID FK+IND +GH GD Sbjct: 298 HKLTLLSQTDSLTGIHNRHYFFNQLTKERDHSKSLTLMVFDIDDFKRINDTYGHGAGDSA 357 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I ++ + M R+GGEEFA G + + + LA + + I ++ ISS Sbjct: 358 ICLITACVRSALEPDMEFARIGGEEFAILVHGKTAEASQQLAELICQRIAEKELMISSNT 417 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +TIS G A H S ++ AD +Y AK G+N+VV Sbjct: 418 FVTLTISLGCA-FYHSPTESPTLHMADSLMYEAKGKGKNQVV 458 >gi|222085563|ref|YP_002544093.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] gi|221723011|gb|ACM26167.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] Length = 466 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 19/194 (9%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 +SG +L E + R +S D L+G+LN + + K++++ FD+D Sbjct: 248 LSGRLLMERAERHWRT--ISITDMLTGVLNRRGLQDYLPLVVKKAARGSHKIAVLLFDLD 305 Query: 138 YFKQINDNFGHPVGDKVI---AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 +FK IND +GH GD V+ A + Q + G GR+GGEEF A + + EA Sbjct: 306 HFKAINDRYGHQTGDTVLAEFARIGRQFIPESGA---FGRMGGEEFIAFIPVADQAEAEA 362 Query: 195 LANDLRKIIENSQINISSGPS-IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252 +A +R E + + +G S + T+S G+A C ++ AD+ALY AK++GR Sbjct: 363 IAETVRA--EVCRAPLLAGQSFVSATVSVGLAIMPCGSANWDRLVSAADRALYAAKRAGR 420 Query: 253 NRVVCFSDIENNTC 266 N V F + E +T Sbjct: 421 NCTVVFGEAEASTA 434 >gi|242280753|ref|YP_002992882.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242123647|gb|ACS81343.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 412 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAFI--------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+GL N F + + NE L +V DID+FK+IND +GH GD+V+ Sbjct: 255 DYLTGLWNRRYFFEYGTPIYEQGMTAGNE-LCVVMLDIDHFKKINDTYGHDAGDEVLKDF 313 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 S L G V R GGEEF G E D R+ + + ++ G I + Sbjct: 314 SSLLADYIGDVGLVSRFGGEEFTVLLNGIQADELFDFLEDFREEVGSFSVDF-KGQVITL 372 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T+S G A E ++ ++ RAD LY AK++GRN+V+C Sbjct: 373 TVSIG-ATANMDESLTVMVSRADDKLYEAKRTGRNKVLC 410 >gi|217974203|ref|YP_002358954.1| diguanylate cyclase [Shewanella baltica OS223] gi|217499338|gb|ACK47531.1| diguanylate cyclase [Shewanella baltica OS223] Length = 581 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 11/176 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146 + + +++R+D L+G+LN A F+ + + ++ FD+D+FK+IND+F Sbjct: 389 MQKRKFMRMARMDALTGILNRGAGQELGENLFVQATARGGD-FCVILFDLDFFKRINDSF 447 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD + + D L R+GGEEFA + E++ +A R IE Sbjct: 448 GHGTGDWALKKVVDSLKSHIRNGDVFARIGGEEFAILLPYADEEKGMEVAEQCRARIEAI 507 Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261 SG IT S G++ + + + +RAD ALY AK +GRN VV +SDI Sbjct: 508 DTQ-HSGHKFVITASFGVSGLMADDLSLDPLFHRADMALYAAKANGRNAVVRYSDI 562 >gi|121596400|ref|YP_988296.1| diguanylate cyclase [Acidovorax sp. JS42] gi|120608480|gb|ABM44220.1| diguanylate cyclase [Acidovorax sp. JS42] Length = 382 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 7/173 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 +EL + +I +L+ D L+GL N + + + L + D+D+FK +N Sbjct: 207 RELAAAVEQIRELAVRDELTGLPNRRYMLEMMRLEHARAQRSRQPLLLAQLDLDHFKAVN 266 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD + + + + R GGEEF + + L +R + Sbjct: 267 DTHGHAAGDVALQSFAQTVHGCVRASDLLARWGGEEFLLLMANTHPADGTRLLERVRATV 326 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + + G + +T+S G+AE H E + ++ RAD ALY AK+ GRNRV+ Sbjct: 327 AATPVALPGGTQLSLTVSVGLAELAHGESTAALLQRADAALYGAKRLGRNRVL 379 >gi|94499135|ref|ZP_01305673.1| hypothetical protein RED65_10114 [Oceanobacter sp. RED65] gi|94428767|gb|EAT13739.1| hypothetical protein RED65_10114 [Oceanobacter sp. RED65] Length = 378 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 9/162 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+G+ N F +++ LS++ DID+FK +ND +GH GD + Sbjct: 202 LASYDPLTGVFNRRGFFDQWQILSKRTHDKSCHLSVMMIDIDHFKHVNDKYGHEAGDAAL 261 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +L+D L + R+GGEEFA G +A I+A LR I ++ + Sbjct: 262 KWLADLLAHELRENDVLARMGGEEFAVMLPGCESSQAEIVAERLRNCIFKTRF-VYLNQV 320 Query: 216 IHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I ITIS G I E I ++ +AD+ LY AK GRNR + Sbjct: 321 IPITISLGFITEDQPITDIKGLLVQADKGLYKAKDLGRNRAM 362 >gi|145298286|ref|YP_001141127.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851058|gb|ABO89379.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 529 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 82/168 (48%), Gaps = 19/168 (11%) Query: 103 LSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 LS D L+G N F L + ++ +V FD D+FKQ+ND FGH VGD+V+ L Sbjct: 364 LSSHDALTGTYNRHYFDEFERLHLRAKAREVGVVMFDCDHFKQVNDRFGHEVGDQVLIRL 423 Query: 159 SDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISS 212 V P+ R GGEEF A G E LA LR +I E+ I+ Sbjct: 424 -----VTLCQPLLKKEDALIRWGGEEFLLLARGREPLEQ--LAERLRLQIAEHPWEEIA- 475 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 P + +TIS G P+ I+RAD ALY AK +GRNR + D Sbjct: 476 -PDLAVTISLGYHHCRAGTPLKEAIHRADLALYQAKANGRNRSEGWQD 522 >gi|194433689|ref|ZP_03065965.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae 1012] gi|194418118|gb|EDX34211.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae 1012] gi|332095505|gb|EGJ00521.1| cellulose synthesis regulatory protein [Shigella dysenteriae 155-74] Length = 558 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|302877329|ref|YP_003845893.1| diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302580118|gb|ADL54129.1| diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 454 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 71/127 (55%), Gaps = 5/127 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ DID+FK+IND FGHP GD+V+ LS+++ T R GGEEF + Sbjct: 330 SVLMLDIDFFKKINDVFGHPFGDEVLKTLSNRVKRRLRTSDVFARWGGEEFVVLLPTADI 389 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 A++LA +R I +S + +T+S G+AE E ++ R D ALY AK Sbjct: 390 NAASVLAERIRAEIADSPV-----FEHQVTVSIGVAEYQRGESQEALLQRVDIALYEAKN 444 Query: 250 SGRNRVV 256 SGRN+VV Sbjct: 445 SGRNKVV 451 >gi|225850346|ref|YP_002730580.1| response regulator [Persephonella marina EX-H1] gi|225645679|gb|ACO03865.1| response regulator [Persephonella marina EX-H1] Length = 615 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 9/169 (5%) Query: 99 RISQLSRIDCLSGLLNH---SAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + S +D L+GL N I L + I+ D+D+FKQ+ND +GH VG Sbjct: 439 KLRKQSLVDQLTGLYNRRFLEELIPKLSQQTIRRKSTIGILMVDVDFFKQVNDQYGHDVG 498 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++D L V R GGEEF + + ++ +A +RK +EN I+ + Sbjct: 499 DTVLKRVADILNKSVREADIVVRYGGEEFIVLLVDVEKGKSVEIAEKIRKKVENMVIH-T 557 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 G ++ T+S G++E H + I AD ALY AK++GRN+VV F Sbjct: 558 DGVTLKKTVSIGVSEFPHDSDRFWQCIKFADIALYRAKETGRNKVVRFE 606 >gi|206576174|ref|YP_002238571.1| putative membrane-bound diguanylate cyclase [Klebsiella pneumoniae 342] gi|288935556|ref|YP_003439615.1| diguanylate cyclase [Klebsiella variicola At-22] gi|290509592|ref|ZP_06548963.1| membrane-bound diguanylate cyclase [Klebsiella sp. 1_1_55] gi|206565232|gb|ACI07008.1| putative membrane-bound diguanylate cyclase [Klebsiella pneumoniae 342] gi|288890265|gb|ADC58583.1| diguanylate cyclase [Klebsiella variicola At-22] gi|289778986|gb|EFD86983.1| membrane-bound diguanylate cyclase [Klebsiella sp. 1_1_55] Length = 474 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 6/135 (4%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 ++ L+++ DID FK++ND GH GD V+ + Q+ + V R+GGEEFA AA+ Sbjct: 331 DKLLTVMVLDIDGFKRVNDALGHEGGDCVLTQFAQQVRQLVDEQGMVARIGGEEFAVAAV 390 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CH---KEPISTIIYRA 240 S Q+ +LA +R +E+ + P IH+TIS G+ R H E + ++ A Sbjct: 391 VDSTQQGYLLAEKIRHGVESQPFGLGQNP-IHLTISMGLETREVGHARITELFNQLLMAA 449 Query: 241 DQALYVAKKSGRNRV 255 D+ + AK++GRNR+ Sbjct: 450 DEEMVKAKQTGRNRI 464 >gi|330807327|ref|YP_004351789.1| response regulator, PleD family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375435|gb|AEA66785.1| Putative response regulator, PleD family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 556 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + LS DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARREGKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 L F+GR GGEEFA + A + +++R+ ++I+ + P + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIDAACKVLDEIRQRF--AEIHYPAQPHDLWC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ E + +AD+ALY AK +GRNRV Sbjct: 497 TFSAGVVEMSDDSDSLMMASQADEALYRAKHAGRNRV 533 >gi|324119004|gb|EGC12893.1| diguanylate cyclase domain-containing protein [Escherichia coli E1167] Length = 564 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLYQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 551 KQAGRNR-VCASD 562 >gi|229916749|ref|YP_002885395.1| diguanylate cyclase [Exiguobacterium sp. AT1b] gi|229468178|gb|ACQ69950.1| diguanylate cyclase [Exiguobacterium sp. AT1b] Length = 378 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 105/217 (48%), Gaps = 19/217 (8%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI----------DCLSGLLNHS 116 E S +I++ L +GY +G L ++ +I + R+ D L+GL N Sbjct: 162 EEPSAYVITLIWFLFIGYATGLFLHIVYGGIRKIERSRRLITKYKEAAYTDTLTGLGNRR 221 Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F + +E+ ++++ DID+FK +ND +GH GD ++ L +L + Sbjct: 222 QFDEEMKRVDEEVFTSPHEIALLLIDIDHFKSVNDTYGHDAGDAILVELGQRLSGIARAD 281 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 V R GGEEF+ + +A +AN + + + +TIS G++ Sbjct: 282 DMVCRNGGEEFSVLLADCNLPQAISIANRYLTEVSKQPFQLPDEAMLDVTISIGVSSTSE 341 Query: 230 KEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENN 264 ++ I++ +I +AD LYVAK++GRNR+ ++ + N Sbjct: 342 RKVITSAQLIKKADIGLYVAKRNGRNRIGKWNQRKAN 378 >gi|117618387|ref|YP_856882.1| sensory box protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559794|gb|ABK36742.1| sensory box/GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 431 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 116/253 (45%), Gaps = 26/253 (10%) Query: 17 KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVII 74 K LE+ P F +F F + I P + + L + S + Sbjct: 179 KRLETLLPQRFRANHDGYFKAFSNSPI----------NSRPMHARASVMGLRRDGSEFPL 228 Query: 75 SITISLL-LGYIS--GSILKELFISYNRISQL---SRIDCLSGLLNHSAF-------ISS 121 +TI+ + LG + +IL+++ + +L + D L+G+ N F + Sbjct: 229 EVTIAKINLGQTTEMTAILRDISERARLVEELKVAATTDPLTGIANRRRFDELVKLEMQR 288 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + +S++ DID+FKQIND +GH GD+ I L ++ +GR GGEEF Sbjct: 289 CQRFGHTMSLLLIDIDHFKQINDTYGHQQGDQAILSLVRRVAKQLREVDMLGRWGGEEFI 348 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRA 240 +S + A A +R +E+ + +G + +TIS GI A ++ + ++ RA Sbjct: 349 VLLPETSLELAWASAERIRLAVESQLHQLGAGTEVPLTISIGISASLGPQDTVERMVRRA 408 Query: 241 DQALYVAKKSGRN 253 D ALY+AKK GRN Sbjct: 409 DTALYLAKKQGRN 421 >gi|229513868|ref|ZP_04403330.1| GGDEF family protein [Vibrio cholerae TMA 21] gi|229349049|gb|EEO14006.1| GGDEF family protein [Vibrio cholerae TMA 21] Length = 495 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N F IS + LS+ D+D+FKQ+NDN+GHP Sbjct: 334 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESNPLSLAVIDLDHFKQVNDNYGHPA 393 Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD +V+A + V GT + R GGEEF ++QEA +R I Sbjct: 394 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 449 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S P +T+S G+ + E + + RADQA+Y AK GRN+VV Sbjct: 450 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 493 >gi|152984917|ref|YP_001347333.1| hypothetical protein PSPA7_1952 [Pseudomonas aeruginosa PA7] gi|150960075|gb|ABR82100.1| hypothetical protein PSPA7_1952 [Pseudomonas aeruginosa PA7] Length = 306 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N A +LG E LS++ DID+FK++ND++GH VGD+ + ++ Sbjct: 149 DALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHAVGDEALKAVA 208 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + V R GGEEF + Q A ++ LR+ +E +G ++ ++ Sbjct: 209 ETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYR-HAGETLKLS 267 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IS G A+ E ++ R D+ALY AK+ GRNR+ C Sbjct: 268 ISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 305 >gi|289548454|ref|YP_003473442.1| diguanylate cyclase [Thermocrinis albus DSM 14484] gi|289182071|gb|ADC89315.1| diguanylate cyclase [Thermocrinis albus DSM 14484] Length = 401 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 103/196 (52%), Gaps = 11/196 (5%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFIS-YNRISQLSRIDCLSGLLNHSAFISSLGS 124 ++N S ++ + +L +SG ++K+ Y+R L LN +S + Sbjct: 216 MDNYSKTLLHLIQEEMLAVLSGFVIKDPLTGLYSR-------QYLEDYLNKE--MSRVKR 266 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + +S++F D+D FK +ND +GH VGD V+ + L + R GG+EF Sbjct: 267 HKLVISLLFIDLDDFKWVNDTYGHMVGDVVLKSFASLLKENLRSGDIPVRYGGDEFVVIL 326 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 +S + A ++A +R+ +EN + + SI +T+S G+ ++ +++ + RAD+A+ Sbjct: 327 PHTSAEGAMVVAERIRRAVEN-HVFEAHNVSIKLTVSIGVTPLKEEDDVTSFLERADRAM 385 Query: 245 YVAKKSGRNRVVCFSD 260 Y AK+ G+NRVV +D Sbjct: 386 YCAKREGKNRVVLLND 401 >gi|316935123|ref|YP_004110105.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315602837|gb|ADU45372.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 741 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 20/171 (11%) Query: 98 NRISQLSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 +R L+R D L+GL N S F ++ S++ FDIDYFK++ND +G Sbjct: 562 DRTRDLARQAATDALTGLHNRSKFNMRLDEELARSQRTGRPFSLIIFDIDYFKEVNDVYG 621 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS- 206 HP+GD+V+ LS + + R GGEEFA + AA A LR ++ ++ Sbjct: 622 HPMGDQVLIRLSQTVAASVRRADLLARWGGEEFAVLLADTDAAAAAETAKKLRLLVAHTI 681 Query: 207 --QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 Q+ IT S G+A+ + T++ RAD ALY AK +GRNRV Sbjct: 682 FEQVG-------SITASFGVAQFMPGDNAETLLARADNALYRAKLNGRNRV 725 >gi|256828941|ref|YP_003157669.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gi|256578117|gb|ACU89253.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] Length = 495 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 17/198 (8%) Query: 75 SITISLLLGYISGSILKELFISYNRISQ----LSRIDCLSGLLNHSAFISSLGS------ 124 SI + L++ +S ++L I NR S+ + D L+G LN AF+ S Sbjct: 296 SIVLVLVVAGLS-TLLVRGQIRLNRQSRELALAASTDMLTGALNRRAFMESASREFARVC 354 Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 Y LS + D+D+FK +ND +GH GD V++ + + P R GGEEF Sbjct: 355 RYGGHLSCIMIDLDHFKNVNDTYGHAAGDLVLSSSAHYIASRLREPDMFCRYGGEEFVIL 414 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAE-RCHKEPISTIIYRAD 241 G+ AA +A +LR + + +++ G + +T S G+AE + T++ AD Sbjct: 415 LPGTDRNGAATVAEELRAGL--AGLDLQRGDEKLPLTASFGVAEIHAQCATLDTLLSLAD 472 Query: 242 QALYVAKKSGRNRVVCFS 259 QALY AK++GRNR VC + Sbjct: 473 QALYEAKENGRNR-VCLA 489 >gi|119478424|ref|ZP_01618409.1| hypothetical protein GP2143_06908 [marine gamma proteobacterium HTCC2143] gi|119448510|gb|EAW29757.1| hypothetical protein GP2143_06908 [marine gamma proteobacterium HTCC2143] Length = 375 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 8/172 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144 SIL++ + R+ + + D L+ LLN + + ++K+ ++ DID+FK++ND Sbjct: 204 SILEDSSVQLLRLERAANTDPLTQLLNRRGLDVIVERWVADSDKMGVLLLDIDHFKKVND 263 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 ++GH +GD+ + +S+ + V R GGEE S + + LRK + Sbjct: 264 DYGHDIGDQALRKISNIIRATSRDDDVVARWGGEELLVITRSSDKPALKEFSERLRKAV- 322 Query: 205 NSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255 S INI+ P +T+S G+ + H+ + + RAD+ALY AK GRN V Sbjct: 323 -SDINIAGLPP--LTVSIGVTQHFSHEAFEQSTLVRADEALYTAKNEGRNLV 371 >gi|332534827|ref|ZP_08410651.1| hypothetical protein PH505_bt00140 [Pseudoalteromonas haloplanktis ANT/505] gi|332035739|gb|EGI72226.1| hypothetical protein PH505_bt00140 [Pseudoalteromonas haloplanktis ANT/505] Length = 167 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 5/158 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS-SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 NR+++ ID L+ + N F + + + I+ DID+FK IND FGH VGD ++ Sbjct: 9 NRLARELIIDDLTKVHNRRYFYQHAKDAQHSPYVILIIDIDHFKAINDEFGHDVGDVILK 68 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ + F RLGGEEF ++ +A + L + INI + S Sbjct: 69 ELATKYDNAFTHQNKFARLGGEEFGGYLPTNNMTQACDFSQQLIDLAHT--INIQN--SR 124 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 H+T+S G+A + E + ++ RADQALY+AKKSGR+R Sbjct: 125 HLTVSIGVAMQTPNELLDKVMKRADQALYLAKKSGRDR 162 >gi|301631717|ref|XP_002944942.1| PREDICTED: hypothetical protein LOC100496669 [Xenopus (Silurana) tropicalis] Length = 738 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 8/173 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 +L +R S L+R D L+G LN I+ + L + D+D FK IND Sbjct: 566 KLQDELDRASTLARHDPLTGTLNRKGLDELMEREIARARRHGTPLCVALLDVDNFKAIND 625 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD + L+D + R GGEEF +S+ + + L++ + Sbjct: 626 RVGHDTGDAALVHLADVARSAMRPQDMLARYGGEEFVVVLPETSQAQGIEIMTRLQREL- 684 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +++ + + I IT S G+A+ +E + I+ RADQ +Y+AK++G+NRVV Sbjct: 685 TTRLFLQNNEKILITFSVGVAQLGTQETSAEILRRADQGMYLAKRTGKNRVVA 737 >gi|242241092|ref|YP_002989273.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Dickeya dadantii Ech703] gi|242133149|gb|ACS87451.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Dickeya dadantii Ech703] Length = 678 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 127/247 (51%), Gaps = 22/247 (8%) Query: 33 IFFSIFIATVIFIANIFLFYIGLTP---FYGLEY------ILVENLSLVIIS--ITISLL 81 +F + A VI A + YIG +P ++G + V +SL+I+ + IS+L Sbjct: 170 LFARLAAALVIGAAIAAIQYIGFSPLAHYHGDSVNQRELSVWVSAISLLILGAMLVISML 229 Query: 82 LGYISGSILKE-LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133 S L + L + +++++L+ D L+GL N L S + + ++++ Sbjct: 230 DAQWRASRLTDSLRQANDQLARLAMHDALTGLPNRMQLERELESCLHHARQHRQTFALMY 289 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D FK +ND +GH +GD+++A ++ +L G M + R+GG+EF E++AA Sbjct: 290 MDLDGFKIVNDAWGHYLGDQLLAGVTTRLREYLGPGMTLARIGGDEFVLLMRDCGEEQAA 349 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGR 252 LA+ L + IE Q SG ++ +T+S GI+ S + AD A+Y K++GR Sbjct: 350 ALADKLVQAIE--QPFHQSGYTLRVTLSVGISLFPRDGATSHDLRLNADTAMYSIKQTGR 407 Query: 253 NRVVCFS 259 N + +S Sbjct: 408 NGWIFYS 414 >gi|222110973|ref|YP_002553237.1| diguanylate cyclase [Acidovorax ebreus TPSY] gi|221730417|gb|ACM33237.1| diguanylate cyclase [Acidovorax ebreus TPSY] Length = 334 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 19/185 (10%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL------------GSYNEKLSIVFFDIDYFK 140 ++ +Y + S D L+GLLN F G + + DID+FK Sbjct: 141 VYQNYQSLLDYSERDALTGLLNRKTFEEQFSRQTGTPASPGEGEDTVRQWLAVIDIDHFK 200 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND FGH GD+V+ ++++L F + + R GGEEF + +A LR Sbjct: 201 SVNDRFGHLYGDEVLILVANRLRTQFQSQDSIFRFGGEEFVVLLRSLTLAQARQALERLR 260 Query: 201 KIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ P I HIT+S G A P+ I+ RADQALY AK+ GRN+V + Sbjct: 261 AAVQTHVF-----PQIGHITVSIGFAATQQGSPVE-ILGRADQALYYAKEHGRNQVCFYE 314 Query: 260 DIENN 264 D+ N+ Sbjct: 315 DLVNS 319 >gi|118475090|ref|YP_891908.1| diguanylate cyclase [Campylobacter fetus subsp. fetus 82-40] gi|118414316|gb|ABK82736.1| diguanylate cyclase [Campylobacter fetus subsp. fetus 82-40] Length = 514 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 68/124 (54%), Gaps = 1/124 (0%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 SI FFDID+FK +NDN+GH GD +++ + L FVGR GGEEF +S+ Sbjct: 386 SICFFDIDHFKIVNDNYGHEAGDTILSTVGKILKKQSRDIDFVGRYGGEEFVVIMPETSK 445 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 A + A ++ I N + + G I ITIS G+A R + + RAD LY AK Sbjct: 446 DNAILFAKNILSNISNFKF-LYRGEDIDITISCGVASRKDSKSDRDTLERADSHLYEAKN 504 Query: 250 SGRN 253 SGRN Sbjct: 505 SGRN 508 >gi|84392322|ref|ZP_00991749.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01] gi|84376442|gb|EAP93322.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01] Length = 422 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 16/161 (9%) Query: 107 DCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+G N + + + L + + I FD+D+FKQIND GH VGDKV+ Sbjct: 268 DPLTGCRNRTEALDTFYDFEWLAQQGKTIHIALFDLDHFKQINDQHGHEVGDKVLIQFVA 327 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---SIH 217 G + R GGEEF L ++ AI N+ I + + + P ++ Sbjct: 328 TANESLGEQYLLYRWGGEEFLLVCL----EQTAIQCNE---SINDFYLAMDQSPWPNALK 380 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +T S G+ + E I T I RAD+ALY AK +GRN+VV F Sbjct: 381 VTTSTGVTQLKEHESIRTAIKRADKALYQAKDNGRNQVVTF 421 >gi|109900259|ref|YP_663514.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas atlantica T6c] gi|109702540|gb|ABG42460.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas atlantica T6c] Length = 965 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 13/178 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 + I ++ D L+G AF SL E+L+++ +ID FK IND GH Sbjct: 524 HQSIEYMASHDTLTGFYQRQAFEKSLHEAILFAKQQQEELTLLHVNIDQFKAINDTHGHK 583 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ LS + + +GRLGG+EF +G++ Q + +LAN L ++ + Sbjct: 584 AGDAVLRQLSQLMKKIVSDDGMIGRLGGDEFGILLVGNNAQNSFMLANKLLNAVQVHEFT 643 Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFSDIENN 264 P +T+ I + + IS+ ++ AD A Y+AKK GRNR+ +S + Sbjct: 644 WEERP---LTLGVSIGQVPWNDTISSSEQLLSMADSACYMAKKHGRNRLHTYSSTDKQ 698 >gi|320159682|ref|YP_004172906.1| putative signaling protein [Anaerolinea thermophila UNI-1] gi|319993535|dbj|BAJ62306.1| putative signaling protein [Anaerolinea thermophila UNI-1] Length = 520 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 12/175 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 ++Q + +D L+G+ N I + EK ++V D+D FKQIND FGH VGD Sbjct: 346 LNQQATVDALTGVYNRRYLIELGETELEKARQMSLPFTVVLMDLDRFKQINDRFGHAVGD 405 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + ++ + VGR GG+EFA G++E++A + L+ +E + Sbjct: 406 HALQEVARCFKAGVRSSDIVGRYGGDEFALILFGATEEQARQVLERLQNCMERLGLQ-EQ 464 Query: 213 GPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G +HI+ S G RC+ P+ ++ RAD ALY AK+ G + F+ E Sbjct: 465 GEPLHISASFGGVTCNGRCYA-PLDELLRRADHALYRAKEQGGKAIEWFAGEEEE 518 >gi|168184822|ref|ZP_02619486.1| GGDEF/HD domain protein [Clostridium botulinum Bf] gi|182672099|gb|EDT84060.1| GGDEF/HD domain protein [Clostridium botulinum Bf] Length = 567 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 9/172 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L D L+ + NH F +L NE LS++F DIDYFK ND +GH G Sbjct: 189 KLESLVNKDGLTDVYNHRFFHDALSKKVIECEEENEALSMIFIDIDYFKHYNDLYGHQKG 248 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210 D+V+ + + L V R GGEEF+ +SE+EA +A ++R IE + Sbjct: 249 DQVLKTIGEILKNNTRKEDIVARYGGEEFSVLLPNTSEEEAINIAENIRGKIEYTYFEGE 308 Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261 + P+ ++T+S GI+ +K +I AD ALY AK +NRV ++ I Sbjct: 309 ENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI 360 >gi|170698468|ref|ZP_02889540.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] gi|170136639|gb|EDT04895.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] Length = 510 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 12/186 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 L+ I+ +++ +L+ D L+GL N F + L ++ LS++F D+D+FK Sbjct: 326 LRRRQIAESKLYRLAHTDSLTGLDNRGTFDAVLAKEAQRASRSGRPLSVLFVDVDHFKAF 385 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD V+ ++ V R GGEEF + + AA +A +R+ Sbjct: 386 NDYYGHLAGDDVLRRVAQSASRCLRRDSDHVARYGGEEFVVTLPDTDARGAATVAEAIRR 445 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260 I I P H+T S G A + + R AD+ALY AK GRNRV SD Sbjct: 446 AIAGLDIAHGRSPYGHVTTSIGTATATGGRVNAAALLRLADEALYRAKSGGRNRV---SD 502 Query: 261 IENNTC 266 E +T Sbjct: 503 AEASTA 508 >gi|148546432|ref|YP_001266534.1| diguanylate cyclase [Pseudomonas putida F1] gi|148510490|gb|ABQ77350.1| diguanylate cyclase [Pseudomonas putida F1] Length = 357 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 16/188 (8%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 L LG++ + +L R+S LS D L+GL NH A+ + I Sbjct: 159 PLALGWVCYQLAIKLGDHKRRLSALSLTDSLTGLFNHGAWKDLLQLKFQACRQRQGHAVI 218 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID+FK IND FGH VGD V+ LS +L GR GG+EF SE + Sbjct: 219 ALIDIDHFKTINDTFGHVVGDCVLRQLSAELRRSLREGDQAGRYGGDEFCVILPEISEAQ 278 Query: 192 AAILANDLRKII---ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 A + LR+ + N+Q+ P + I++S G++ + E + +AD+ALY+A Sbjct: 279 ACQVMERLRERVSSYRNTQL-----PHLRISLSIGLSPFEANLESPEHWLEQADKALYIA 333 Query: 248 KKSGRNRV 255 K +GR++V Sbjct: 334 KHAGRDQV 341 >gi|115524045|ref|YP_780956.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] gi|115517992|gb|ABJ05976.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris BisA53] Length = 641 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 5/169 (2%) Query: 98 NRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +R+++++ D L+GL N F+ S +L+++ DID+FK ND+ GH GD+ Sbjct: 457 SRLAEMATTDSLTGLANRRTLDVFLRREFSSARQLAVLLLDIDHFKGFNDSLGHQAGDEC 516 Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L GTP R GGEEFA G E A +A+ +R + I + Sbjct: 517 LKKIAVVLAEATDGTPGLSARYGGEEFALVLPGVREDAALAIADAVRLQVRALDIANPAS 576 Query: 214 PSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261 +T+S GIA + T ++ ADQALY AK+ GRN VC S + Sbjct: 577 DFGCVTVSIGIAIKSPATRNETALLGEADQALYAAKRQGRNCCVCGSTL 625 >gi|323183939|gb|EFZ69326.1| cellulose synthesis regulatory protein [Escherichia coli 1357] Length = 558 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|153871720|ref|ZP_02000821.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS] gi|152071815|gb|EDN69180.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS] Length = 578 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 10/185 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFK 140 I +EL + + +L +D L+ + N F S EK ++++ D+D+FK Sbjct: 380 QIEQELHKTNEELQRLVSLDSLTNIANRRRFDEHFDQEWKRSKREKKPITLIMCDVDFFK 439 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND +GH +GDK + ++ + P V R GGEEFA + + A +A + Sbjct: 440 LYNDTYGHQLGDKCLRVIAKAISKQIKRPSDLVARYGGEEFAVILPNTKPEGAVKVAEAI 499 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 R +E+ +I S P+ +T+S G++ + P S ++ AD+ALY AKK GRNR V Sbjct: 500 RLELEHLKIAHLSSPNKIVTLSLGVSSLPTRPPFSQKILLTLADKALYEAKKRGRNRTVL 559 Query: 258 FSDIE 262 ++ E Sbjct: 560 KTEKE 564 >gi|319426296|gb|ADV54370.1| diguanylate cyclase [Shewanella putrefaciens 200] Length = 368 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 10/177 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 G ++ L +S + D L+ L N A+ I + + S++ DID F Sbjct: 188 GQEVQHLKSEMENLSLAAMTDQLTSLYNRRAYEIAIQDHIHRAQEQHSRCSLLIVDIDRF 247 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 KQ ND +GH +GDKV+A+++ L FV R GGEEF + +A +A L Sbjct: 248 KQFNDTYGHQIGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETL 307 Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 R+ I + I + IT+S G+A + T+ RAD+ALY AK GRN Sbjct: 308 RERISERHLTIGKDKKLSLGAITVSIGLASLQEGDDAETLFSRADKALYEAKSDGRN 364 >gi|27380234|ref|NP_771763.1| response regulator PleD [Bradyrhizobium japonicum USDA 110] gi|27353388|dbj|BAC50388.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 457 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 79/159 (49%), Gaps = 9/159 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N S L + E+ L+++ DIDYFK INDN+GH GD V+ + Sbjct: 295 DTLTGLHNRRYMESHLATLAEQAATRGKPLALMILDIDYFKSINDNYGHDAGDDVLREFA 354 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218 ++ R GGEEF + A ++A LR+ I I G I + Sbjct: 355 VRVRKSIRGIDLACRYGGEEFVIVMPETDLHVAGMVAERLRRSIAGEPFAIHKGTKRIEV 414 Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 TIS G+ K E ++ ++ RAD ALY AK GRNRVV Sbjct: 415 TISIGLTTLEQKGEAVTDVLKRADTALYRAKHDGRNRVV 453 >gi|313632317|gb|EFR99362.1| ggdef domain-containing protein [Listeria seeligeri FSL N1-067] Length = 175 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 95/178 (53%), Gaps = 15/178 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNF 146 K+LF Y Q S +D L+ L N F + +K ++++ DID+FK IND + Sbjct: 3 KQLFQKY---EQDSTLDYLTQLSNVRQFDEKINHVVDKSGRQVALLLIDIDFFKNINDTY 59 Query: 147 GHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH GD K +AF+ + G+ F R GGEEF+ L S +E A +RK Sbjct: 60 GHDAGDAILKQLAFILKE-STTDGSEAF--RNGGEEFSLILLDCSVEEGNYFAEHIRKET 116 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260 E I SG ++ ITIS G++ ++ S +++ AD+ALY AK +GRNR VC +D Sbjct: 117 EEHHFLIPSGQTVKITISIGVSGSHNEVTTSERLFKSADEALYKAKLTGRNR-VCIAD 173 >gi|285019719|ref|YP_003377430.1| signal transduction protein [Xanthomonas albilineans GPE PC73] gi|283474937|emb|CBA17436.1| hypothetical signal transduction protein [Xanthomonas albilineans] Length = 334 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 3/132 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 +E ++++ DID FK IND GH VGD + +++ + P + R+GGEEF Sbjct: 198 SEPVAVLMVDIDNFKAINDRHGHAVGDIALVTIANLMSQQIHRPDLLARVGGEEFMILVP 257 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQA 243 E LA LR+ IE+ + SG ++ T+S G I+ + E T++ ADQA Sbjct: 258 HGDEAAVHALAERLRRTIESQPVPEPSGDTLTCTVSIGYCISIQAQAE-WQTLVVAADQA 316 Query: 244 LYVAKKSGRNRV 255 LY +K++GRNRV Sbjct: 317 LYTSKRNGRNRV 328 >gi|289208828|ref|YP_003460894.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] gi|288944459|gb|ADC72158.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] Length = 491 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 85/187 (45%), Gaps = 18/187 (9%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNE 127 SI I LL+ Y +++E + QLSR D L+G N ++ + + Sbjct: 302 SILIFLLVLYRMSGLIRETQRQAQALEQLSRTDPLTGAANRRHLETVLEDELARVRRLDT 361 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 L++ F D+DYFKQ ND GH GD+++ L + R GGEEF + Sbjct: 362 PLALAFIDLDYFKQYNDLHGHAQGDRLLRDLVTAWHQELRPSDTIARYGGEEFVVVLPHT 421 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 +A + LR+ N Q T SAGIA E +++ RADQALY A Sbjct: 422 GPDQAGTVIERLRQRTPNQQ-----------TCSAGIACAEPMETAESLLRRADQALYRA 470 Query: 248 KKSGRNR 254 K GRN+ Sbjct: 471 KDEGRNQ 477 >gi|254492410|ref|ZP_05105582.1| GGDEF domain protein [Methylophaga thiooxidans DMS010] gi|224462302|gb|EEF78579.1| GGDEF domain protein [Methylophaga thiooxydans DMS010] Length = 336 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 14/163 (8%) Query: 103 LSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+ + N AFI+ NE + ++ DID FKQIND FGH VGD+V+ Sbjct: 172 LANTDELTDIWNRRAFIAESEKELQRAVRNEHPVCLLMLDIDDFKQINDQFGHEVGDEVL 231 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ + + GR+GGEEFA + + EA LA +R+ + N + + Sbjct: 232 KLFCHGIMAIKRSYDIFGRIGGEEFAILLPETKQTEAVELAERIREKVANIFFH-TQQQK 290 Query: 216 IHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRV 255 + IT+S G+ C P+ T+ + +AD+ LY AK++G+N+V Sbjct: 291 VGITVSIGV---CQLTPLDTVLSGLNKADKILYTAKRAGKNQV 330 >gi|149377372|ref|ZP_01895117.1| GGDEF domain-like protein [Marinobacter algicola DG893] gi|149358384|gb|EDM46861.1| GGDEF domain-like protein [Marinobacter algicola DG893] Length = 524 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+LN I+ Y+ +L++++ D D+FK IND+ GH GD V+ S Sbjct: 356 DSLTGVLNRREMTRILEEEIARAKRYDRELALLWIDFDHFKAINDDHGHAAGDSVLKAAS 415 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + VGR GGEEF +EA A LR+++ ++ + G ++ +T Sbjct: 416 GLLAESVRSVDSVGRFGGEEFVILLPEMDRREALETAERLRRLVCDTPQPLGHGNTVTMT 475 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IS G++ H E + AD+A+Y AK GRN+VV Sbjct: 476 ISIGVSVFPDHGEGADALCAAADRAMYQAKADGRNQVV 513 >gi|160874459|ref|YP_001553775.1| diguanylate cyclase [Shewanella baltica OS195] gi|160859981|gb|ABX48515.1| diguanylate cyclase [Shewanella baltica OS195] gi|315266695|gb|ADT93548.1| diguanylate cyclase [Shewanella baltica OS678] Length = 581 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 17/184 (9%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDY 138 G + K F+ +++R+D L+G+LN A F+ + + ++ FD+D+ Sbjct: 387 GQMQKRKFM------RMARMDALTGILNRGAGQELGENLFVQATARGGD-FCVILFDLDF 439 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+IND+FGH GD + + D L R+GGEEFA + E++ +A Sbjct: 440 FKRINDSFGHGTGDWALKKVVDSLKSHIRNGDVFARIGGEEFAILLPYADEEKGMEVAEQ 499 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257 R IE SG IT S G++ + + + +RAD ALY AK +GRN VV Sbjct: 500 CRARIEAIDTQ-HSGHKYVITASFGVSGLMADDLSLDPLFHRADMALYAAKANGRNAVVR 558 Query: 258 FSDI 261 +SDI Sbjct: 559 YSDI 562 >gi|116696263|ref|YP_841839.1| GGDEF domain-containing protein [Ralstonia eutropha H16] gi|113530762|emb|CAJ97109.1| GGDEF domain protein [Ralstonia eutropha H16] Length = 524 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 9/164 (5%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+G+ N F ++ ++ L ++ D+D FKQ ND GH GD + + Sbjct: 360 IDALTGIRNRRYFQRESIAAVTRACERSQALGLLILDVDQFKQYNDLHGHVAGDDCLRQI 419 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIH 217 + L F RLGGEEFAA G++ +E +A + ++ + I + P Sbjct: 420 AGALARTLSGEQFCARLGGEEFAAVLPGATREETRDVARRMVAVVRDLGIAHNGTPVQPV 479 Query: 218 ITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 +TIS G + P + +++RAD A+Y AK++GRNR + D Sbjct: 480 VTISVGAVWTVPEAPRLEPLLHRADSAMYRAKRAGRNRFMLDGD 523 >gi|78355933|ref|YP_387382.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218338|gb|ABB37687.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 542 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 15/174 (8%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + LS D L+GL N + I++ + S + DID+FKQ+ND +GH GD Sbjct: 362 LEHLSFCDTLTGLHNRRHLAHEGTRTITACTEADLPCSCLMLDIDFFKQVNDAWGHDAGD 421 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ + + R+GGEEFA A + A LA +R+ IE++ + + Sbjct: 422 MVLQSVARTISNAVRSKDMTIRMGGEEFAVIAPATDTASAFSLAERIRRNIESTPVQAAD 481 Query: 213 GPSIHITISAGIAERCHKEPI------STIIYRADQALYVAKKSGRNRVVCFSD 260 I ITIS G+A+ PI ++ +AD+ALY AKK GRNR +S+ Sbjct: 482 D-EIRITISIGVAD-MGGAPIFGTTQLDDLLAKADRALYQAKKKGRNRTEIWSE 533 >gi|228998829|ref|ZP_04158415.1| Sensory box/GGDEF family protein [Bacillus mycoides Rock3-17] gi|229006344|ref|ZP_04164028.1| Sensory box/GGDEF family protein [Bacillus mycoides Rock1-4] gi|228754990|gb|EEM04351.1| Sensory box/GGDEF family protein [Bacillus mycoides Rock1-4] gi|228761004|gb|EEM09964.1| Sensory box/GGDEF family protein [Bacillus mycoides Rock3-17] Length = 431 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y QL+ ID L+ + N F S N+ ++++ FDID FK++ND +GH Sbjct: 262 YQEQEQLAAIDSLTEIYNRLKFQQLLEEKWKSEKRVNQTMALILFDIDDFKKVNDTYGHD 321 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + + R GGE+F + ++E+EA +A LR IE Q + Sbjct: 322 FGDLALIQLAELMKSKIASQHIFARWGGEKFIILVINTTEKEAFQVAESLRFFIETKQFS 381 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S +T S G+A +I RAD ALY AKK+G+N+V + Sbjct: 382 SISK----LTASFGVALYEQGMTKEELIQRADIALYEAKKNGKNQVRLY 426 >gi|288549571|ref|ZP_05967457.2| putative GGDEF domain protein [Enterobacter cancerogenus ATCC 35316] gi|288318420|gb|EFC57358.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC 35316] Length = 471 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 10/196 (5%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN 126 I ++ I +L Y ++ +E + Y + Q S D L+ L N S F +L S Sbjct: 277 IATLLIIFVLLYDVFNLYRESHLKYQQSYQNSIRDPLTRLYNRSYFYDALNHSLRSASRT 336 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + +S+V D+D FK+IND +GH GDKV+ F++ L+ R+GGEEF Sbjct: 337 QPVSVVVSDLDRFKRINDCYGHLQGDKVLKFVARLLMDSVRPDDIAARIGGEEFVLMLAN 396 Query: 187 SSEQEAAILANDLRKIIENSQINISSG--PSIHITISAGIAERCHKEPIS-TIIYRADQA 243 + A +A +R+ + + N S P ITIS G+ E + T + AD+A Sbjct: 397 TPPDTARQVAERIREKLSSFDKNSSEEQLPE-PITISMGVFTATSAETTAETCVECADKA 455 Query: 244 LYVAKKSGRNRVVCFS 259 +Y AK++GRNRVV +S Sbjct: 456 MYEAKETGRNRVVVYS 471 >gi|289209499|ref|YP_003461565.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] gi|288945130|gb|ADC72829.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] Length = 307 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 15/166 (9%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N AF ++ + LS++ D+D+FK+IND++GH VGD+++ ++ Sbjct: 140 DELTGLGNRRAFEIQGAKWLADCRRQDRPLSVLAIDLDHFKRINDDYGHAVGDELLRRVA 199 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--------SQINIS 211 D L + R+GGEEF A G+ A A +R I N + Sbjct: 200 DTLRAATRQSDLLVRMGGEEFLAVLPGADLACAMECAERIRTAIANIRATATADDASALQ 259 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S + +T S G+A + + +AD+ALY AK+SGRNRV+ Sbjct: 260 SEGMVKVTASIGVASVGRSTTLQALYQKADEALYAAKQSGRNRVLA 305 >gi|78357722|ref|YP_389171.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220127|gb|ABB39476.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 252 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 21/197 (10%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 +++ ++ + +L G I G R + L ID L+ L N F LG Sbjct: 54 MLVGTVLVFMLFGLIIGR-------HERRFAGLCLIDPLTSLFNKRHFDLRLGQEVARHQ 106 Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + + ++ D+D+FK++ND GH GD V+ ++ L T + R+GGEEFA Sbjct: 107 REDSPMCVIMLDLDHFKKVNDTLGHQAGDVVLMAVASTLRGCVRTEDVLARVGGEEFAVV 166 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PI--STIIY 238 + A LA +R +E I + G I +S G+A C + P+ ++ Sbjct: 167 VPRTDMHGGAALAERIRAAVEEQIIPVGGGRETTIRVSLGVA--CMEAGSVPVLPHDLME 224 Query: 239 RADQALYVAKKSGRNRV 255 +AD+ALY AK +GRNRV Sbjct: 225 QADEALYRAKANGRNRV 241 >gi|117921386|ref|YP_870578.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117613718|gb|ABK49172.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 575 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 11/175 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146 + R +++R+D L+G+LN A F+ + + ++ FD+D+FK+IND++ Sbjct: 385 LQKRRFMRMARMDALTGVLNRGAGQDLGENLFVQAAARGGD-YCVILFDLDHFKRINDSY 443 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD + + + L R+GGEEFA ++E + +A R+ +E Sbjct: 444 GHGTGDWALKKVVEVLKPHVRNGDVFARIGGEEFALFLPYANESKGMEVAEQCRRRLEAI 503 Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ SG IT S G++ ++ + +++RAD ALY AK +GRN V C+ D Sbjct: 504 DTHL-SGHKFTITASFGVSGMTKEDLSLDPLLHRADMALYAAKSNGRNSVFCYED 557 >gi|317402392|gb|EFV82964.1| hypothetical protein HMPREF0005_00065 [Achromobacter xylosoxidans C54] Length = 531 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 11/167 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + + S D L+ LLN ++ L + L+IV DID+FK IND +GH GD+ + Sbjct: 357 LRRASTTDTLTSLLNRRGLNEAMALLQAAETPLAIVALDIDHFKNINDRYGHAAGDRALQ 416 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ L V R GGEEF G+S A A LR +E ++ +G Sbjct: 417 ILAALLTEGSRGGDTVARSGGEEFVMLMPGASLAAAVGAAERLRLKLE--RLGTDTGLPA 474 Query: 217 HITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 IT+SAG+A C H + ++ RAD+ALY AK GRN VC +D Sbjct: 475 PITLSAGVA--CYPAHGATLDEVMQRADRALYYAKNHGRN-AVCVAD 518 >gi|188534112|ref|YP_001907909.1| Conserved hypothetical protein YneF [Erwinia tasmaniensis Et1/99] gi|188029154|emb|CAO97026.1| Conserved hypothetical protein YneF [Erwinia tasmaniensis Et1/99] Length = 464 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 132/264 (50%), Gaps = 24/264 (9%) Query: 10 SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIF----IANIFLFYIGLTPFYGLEYIL 65 +IWL +L P +++ +I + +FI ++ I+ I L + G Y+ Sbjct: 201 AIWLGGGGSL--LFPLPALLWCAISYPLFITCLLTMMTGISEIILVAGNVLSIQGKGYLF 258 Query: 66 -VENLS---LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121 +++LS L + ++ IS L+ +S K+L RI++ + D L+G L S + Sbjct: 259 RIDSLSSARLGVAAMLISPLIVSLSTISNKKL---VARITRRADYDFLTGALTRSGLSAK 315 Query: 122 L-----GSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L G + + DID FK IND +GH GD V+A ++ L V Sbjct: 316 LDLLVTGRNRPPCFSGAALVIDIDRFKDINDTWGHAAGDYVLAKTAECLRAALPQSALVC 375 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKE 231 R+GGEEF G ++ + +LAN LR+ +E +++ + +G + +T+S GI+ + Sbjct: 376 RMGGEEFLILIEGIAQPRSLLLANRLRRHVERNKV-LFNGNDLSVTVSIGISALNISNVN 434 Query: 232 PISTIIYRADQALYVAKKSGRNRV 255 + I RAD+ LY+AK SGRN+V Sbjct: 435 SLDESIMRADEQLYIAKSSGRNQV 458 >gi|308188189|ref|YP_003932320.1| hypothetical protein Pvag_2712 [Pantoea vagans C9-1] gi|308058699|gb|ADO10871.1| Uncharacterized protein yneF [Pantoea vagans C9-1] Length = 473 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 14/194 (7%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----N 126 L + +I IS L+ S +++L R++ + D L+ LL+ S SL + + Sbjct: 270 LGVATIAISPLIVAASMDAIRQL---NQRLALRANYDFLTRLLSRSGLYESLRAEPIFPD 326 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 ++ ++ D+DYFK INDNFGH GD V+ ++ ++ V G + R GGEEF Sbjct: 327 RRVGVILLDVDYFKAINDNFGHDAGDSVLEEIARRMQRVVGKAGRICRFGGEEFVVVLFD 386 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP------ISTIIYRA 240 + ++ LA +R+ + + + G + +T+S G+A E I+ +I A Sbjct: 387 QNAEKLYFLAEAIRQKMAKEKFWL-QGSTATVTVSLGLAHGSADEATEWHRVINRLISAA 445 Query: 241 DQALYVAKKSGRNR 254 D+ LY++K++GRN+ Sbjct: 446 DKNLYLSKRNGRNQ 459 >gi|167902129|ref|ZP_02489334.1| diguanylate cyclase [Burkholderia pseudomallei NCTC 13177] Length = 281 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 9/177 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141 +L+EL + ++ L+ D L+G N FI + S S++ D+D FK Sbjct: 105 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 164 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 INDN+GH VGD V+ Q +V + R+GGEEF A+ +A +R Sbjct: 165 INDNYGHQVGDVVLRNFVRQCLVAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 224 Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 225 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 280 >gi|99080876|ref|YP_613030.1| diguanylate cyclase [Ruegeria sp. TM1040] gi|99037156|gb|ABF63768.1| diguanylate cyclase [Ruegeria sp. TM1040] Length = 313 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 5/152 (3%) Query: 106 IDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 +D L+G N S + K +++ FD+DYFK +ND +GHP GD V+ ++ + Sbjct: 166 LDPLTGCFNRRHLARVAQSQDLSKAALILFDLDYFKSVNDTYGHPTGDFVLRAVTSLVRQ 225 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 G R+GGEEF L S E LA R +++SQI S +T + Sbjct: 226 FLGPEDLFFRIGGEEFMVLRLRSEEGSTRALAEKCRAALDDSQILSSR----RVTATFSC 281 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 AE + I ++ +AD AL AK++GRNRVV Sbjct: 282 AEFDGRTEIEPVLGQADVALLQAKRAGRNRVV 313 >gi|300309602|ref|YP_003773694.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gi|300072387|gb|ADJ61786.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 384 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 11/196 (5%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------S 121 +SLV S+ + L+ ++G+ E RI QL+ D L+GLLN A + + Sbjct: 186 QISLVEGSMAVMLIALSMTGT---ERHRREERIGQLAARDPLTGLLNRRALQARAPALIA 242 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 S +++ DID FKQ+ND GH GDK++ LS L V RLGG+EFA Sbjct: 243 QASQAHPGALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLREVLPDDALAARLGGDEFA 302 Query: 182 AAALGSSEQEAAILANDLRKI-IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 + + A + LR+ + +Q +++ ++ +++ + + ++ ++ RA Sbjct: 303 ILLPDGRQAQVAHIGEQLRQAFVHVTQTAVATPEAVSLSVGVSLFSTAALD-LAGLMARA 361 Query: 241 DQALYVAKKSGRNRVV 256 D ALY AK++GRN++V Sbjct: 362 DAALYEAKRAGRNQIV 377 >gi|115376221|ref|ZP_01463463.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1] gi|310821744|ref|YP_003954102.1| FHA domain/GGDEF domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|115366794|gb|EAU65787.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1] gi|309394816|gb|ADO72275.1| FHA domain/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1] Length = 292 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 16/199 (8%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------- 118 + N LV I TI +I+G ++ + ++ I +L+ +D L+ + N F Sbjct: 99 LRNGDLVKIGRTI---FKFIAGGNIEAAY--HDEIYRLTTMDGLTQVHNRRYFDEQLDRE 153 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 +S Y LS+V FD+D+FK IND GH GD V+ L+ + V R GGE Sbjct: 154 VSRSRRYERVLSLVMFDVDHFKHINDKRGHLAGDYVLKHLASTVRVNIRREDVFARYGGE 213 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTI 236 EF + + A +R+++E ++ + +I +TIS G+A + H+EP + + Sbjct: 214 EFGILLPEVDAKGTWLFAEKVRQMVEQARF-VFDKHTIPVTISLGVATLQPEHREP-ADL 271 Query: 237 IYRADQALYVAKKSGRNRV 255 + AD+ LY AK +GRNRV Sbjct: 272 VRAADEKLYEAKNTGRNRV 290 >gi|152964253|ref|YP_001360037.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] gi|151358770|gb|ABS01773.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] Length = 391 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 26/208 (12%) Query: 67 ENLSLVIISITISLLLGYISGSILKE--------LFISYNRISQLSRIDCLSGLLNHSAF 118 E ++ ++++ + L+L + +L+ L ++ +R L+ D L+GLLN Sbjct: 163 EERAMRVLAVQMVLVLSVVGLFVLRRRLDTAVALLTLARDRADDLAGHDPLTGLLNRRGL 222 Query: 119 ISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 +L + V D+D+FK +ND GH GD V+ ++ L V Sbjct: 223 RLALEAAAAGGRGLGPTGAVLLDVDHFKTVNDTLGHDAGDAVLIRIAAVLAATARPTDLV 282 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232 R+GGEEF A + + A L LR + ++ G +T+SAG+A C EP Sbjct: 283 ARIGGEEFLVVATATEPGDVARLGERLRAAV------VADGGRPPVTVSAGVAS-CPPEP 335 Query: 233 -----ISTIIYRADQALYVAKKSGRNRV 255 + + RAD+ LY AK +GRNRV Sbjct: 336 GVPCLVDELQSRADRLLYRAKSTGRNRV 363 >gi|156973148|ref|YP_001444055.1| hypothetical protein VIBHAR_00827 [Vibrio harveyi ATCC BAA-1116] gi|156524742|gb|ABU69828.1| hypothetical protein VIBHAR_00827 [Vibrio harveyi ATCC BAA-1116] Length = 626 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGHP 149 ++ LS D L+ L N F L + L + FDIDYFK+IND GH Sbjct: 460 KLRNLSERDGLTNLWNRRKFEEQLSQHANMLERYPNTPTTCLALFDIDYFKRINDEMGHD 519 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+VI +++ L+ FV R+GGEEFA ++ +EA ++ N LR +E Sbjct: 520 EGDRVICSVAETLLSGVRNTDFVARVGGEEFAVLMPHTTIEEAEVVLNRLRVAVE----- 574 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VC--FSDI 261 +S S +T+S G ++ S Y+ AD ALY +K +GRNRV +C F DI Sbjct: 575 LSGDGS--VTVSVGYSDLTSDRTRS---YKCADIALYESKSAGRNRVSICHSFDDI 625 >gi|49087236|gb|AAT51434.1| PA2771 [synthetic construct] Length = 342 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 15/203 (7%) Query: 65 LVENLSLVIISITISLLLGYISGSILKE----LFISYNRISQLSRIDCLSGLLNHSAF-- 118 L E L +SI L GY+ L E L +R + S +D L+ L N + F Sbjct: 141 LREGRQLNRLSI---LAEGYLQLRSLTEHTRFLRQEIDREQRKSLLDPLTQLWNRAGFHA 197 Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 + + ++++ I++ DID+FK+IND GH GD V+ + +L + Sbjct: 198 LHQHELELARASDQRIGIIYSDIDHFKRINDTLGHRAGDSVLREAASRLRAALRPEDLLA 257 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF A E ++AN +R+++E + I+ +G S+ +TISAG E Sbjct: 258 RFGGEEFVAMVRVRETTELTMIANRIRELMEATPIDC-AGTSVPVTISAGCTLAGSGEEP 316 Query: 234 STIIYRADQALYVAKKSGRNRVV 256 + RAD ALY AK++GRNRVV Sbjct: 317 ERALARADAALYDAKRAGRNRVV 339 >gi|317051786|ref|YP_004112902.1| diguanylate cyclase [Desulfurispirillum indicum S5] gi|316946870|gb|ADU66346.1| diguanylate cyclase [Desulfurispirillum indicum S5] Length = 433 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 11/200 (5%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 YI+ NL + ++ + ++ + + EL + R +L+ D L+ +LN F+ L Sbjct: 235 YIVRANLISASANPDVAHQICVVTFANVTELEMEKQRFQELAMRDPLTDILNRKFFVQEL 294 Query: 123 GS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 YN S+V FDID FK +ND +GH VGD V+ + + GR Sbjct: 295 EREIARSVRYNHTFSLVMFDIDRFKPVNDTYGHQVGDYVLKEVVTLVSFHMRRTDVFGRY 354 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 GGEEF + + A LA +R+ I++ + H+T S G+AE ++ Sbjct: 355 GGEEFIILLPETGLEGACALAEKIRETIDSHIFDFIE----HLTCSFGVAEFNNELTSFE 410 Query: 236 IIYRADQALYVAKKSGRNRV 255 +I R D ALY AK +GRNR+ Sbjct: 411 LIKRTDDALYKAKNNGRNRI 430 >gi|152991401|ref|YP_001357123.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] gi|151423262|dbj|BAF70766.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] Length = 344 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 17/202 (8%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQ----LSRIDCLSGLLNHSAF-------IS 120 + +SI + L G+I L E Y +I++ LS D L+ L N F I+ Sbjct: 145 IYLSIIAAALFGWIIEQKLFEFAQKYQQITENLYKLSTTDPLTQLYNRRFFFEECTKKIN 204 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + ++++ D+D+FKQIND +GH GD+++ + L V R+GGEEF Sbjct: 205 LAKRKSLPIALLSIDLDHFKQINDQYGHAQGDEILTSFAKILQKSLRGYDIVARMGGEEF 264 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKE-PISTIIY 238 A + + +AN KI+EN + I PS ++++S GIA + H+ + ++ Sbjct: 265 AVCIIDENLNNVRFIAN---KILENVR-KIEVAPSNNLSVSIGIAFSKPHENINLQQLLI 320 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 +AD+ALY AK+ GR+R+ + + Sbjct: 321 QADKALYRAKERGRDRIEVYEE 342 >gi|152992452|ref|YP_001358173.1| signal transduction response regulator [Sulfurovum sp. NBC37-1] gi|151424313|dbj|BAF71816.1| signal transduction response regulator [Sulfurovum sp. NBC37-1] Length = 755 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 13/175 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQIND 144 +++ N + +S ID L+ L N + S +++ S++ DID FK IND Sbjct: 584 RKMSTEKNALEAISMIDSLTELFNRRKIDRLIDSEVKRIRTKGCFSLILIDIDNFKNIND 643 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 ++GH VGD V+ ++ L GR GGEEF +S++EAA A +R IE Sbjct: 644 SYGHDVGDIVLKHIAQILKSSVRKKDSAGRWGGEEFLIVCPDTSKEEAAKFAERIRIAIE 703 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257 N S + +T S G+AE ++E I +++I R D+ALY +K+ G+NRV Sbjct: 704 NE----SFEKILKVTASVGVAE-YNRENIGDTSLIRRLDKALYDSKRDGKNRVTV 753 >gi|146293192|ref|YP_001183616.1| diguanylate cyclase [Shewanella putrefaciens CN-32] gi|145564882|gb|ABP75817.1| diguanylate cyclase [Shewanella putrefaciens CN-32] Length = 368 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 10/177 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 G ++ L +S + D L+ L N A+ I + + S++ DID F Sbjct: 188 GQEVQHLKSEMENLSLAAMTDQLTSLYNRRAYEIAIQDHIHRAQEQHSRCSLLIVDIDRF 247 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 KQ ND +GH +GDKV+A+++ L FV R GGEEF + +A +A L Sbjct: 248 KQFNDTYGHQIGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETL 307 Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 R+ I + I + IT+S G+A + T+ RAD+ALY AK GRN Sbjct: 308 RERISERHLTIGKDKKLSLGAITVSIGLASLQEGDDAETLFSRADKALYEAKSDGRN 364 >gi|229181661|ref|ZP_04308986.1| GGDEF domain protein [Bacillus cereus 172560W] gi|228601857|gb|EEK59353.1| GGDEF domain protein [Bacillus cereus 172560W] Length = 196 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 9/198 (4%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121 + L +IS I+ + +IS + + + + ++ Q + ID L+GL N F IS+ Sbjct: 1 MGLYLISSIITGYITFISANYVLQSNELFQKMKQYATIDALTGLGNVRQFDLEMNRHISN 60 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 N+ ++ DID+FK +ND +GHP GD+V+ + L P R GGEEFA Sbjct: 61 KNMKNDSFCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDLAFRKGGEEFA 120 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 + +R +E+ + I IT+S G++E ++ I AD Sbjct: 121 LLIPNKGLAYGILTGEQIRTAVESHSFQLLDETKIKITVSVGVSE--YEGSPEQFIQAAD 178 Query: 242 QALYVAKKSGRNRVVCFS 259 ALY +K++GRN+V S Sbjct: 179 DALYYSKRNGRNKVSSVS 196 >gi|206602016|gb|EDZ38498.1| Diguanylate cyclase [Leptospirillum sp. Group II '5-way CG'] Length = 371 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 12/177 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHP 149 R+ + + D L+G L A +S L + L + FDID FK+IND GH Sbjct: 185 TRLKKEALFDNLTGALLRKAGLSELTRRMAQTDRRPDVPLFVALFDIDDFKRINDQDGHQ 244 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+A +++ RLGGEEF G+S + LA +LR+ IE +I Sbjct: 245 SGDRVLAAVAEATRRSIRKGDTFIRLGGEEFLLVFSGNSFDQVRSLAENLRQRIEK-EIQ 303 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 +S G +T+S G+ + E +S +++R+DQ +Y AK SG+N+ VC+ + N Sbjct: 304 LSDGSG--VTVSIGLTQYKPGESLSELLHRSDQRMYDAKSSGKNQ-VCWQEPRNGPL 357 >gi|149377694|ref|ZP_01895430.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter algicola DG893] gi|149358047|gb|EDM46533.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter algicola DG893] Length = 364 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 79/160 (49%), Gaps = 8/160 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N L + SIV D+D FK+IND++GH GD V+ Sbjct: 193 ARTDELTGLSNRRDMQHRLNEEYSRYRRSGHHFSIVLIDLDLFKRINDDYGHDAGDHVLR 252 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 S + V R GGEEF +S +A LA LR + +++ + +G S+ Sbjct: 253 AFSQLMETVIRQTDVAARWGGEEFLILLPDTSLLQALTLAERLRSEVASAEFSF-AGQSM 311 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +TISAGI + ++ +AD LY AK+ GRNRV Sbjct: 312 PVTISAGICSIAKTSSVDELLKQADVHLYNAKQDGRNRVA 351 >gi|120598731|ref|YP_963305.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|120558824|gb|ABM24751.1| diguanylate cyclase [Shewanella sp. W3-18-1] Length = 368 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 10/177 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 G ++ L +S + D L+ L N A+ I + + S++ DID F Sbjct: 188 GQEVQHLKSEMENLSLAAMTDQLTSLYNRRAYEIAIQDHIHRAQEQHSRCSLLIVDIDRF 247 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 KQ ND +GH +GDKV+A+++ L FV R GGEEF + +A +A L Sbjct: 248 KQFNDTYGHQIGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETL 307 Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 R+ I + I + IT+S G+A + T+ RAD+ALY AK GRN Sbjct: 308 RERISERHLTIGKDKKLSLGAITVSIGLASLQEGDDAETLFSRADKALYEAKSDGRN 364 >gi|89093907|ref|ZP_01166852.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92] gi|89081793|gb|EAR61020.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92] Length = 197 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 22/179 (12%) Query: 93 LFISYNRISQLSRI--DCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIN 143 L I+ +R+ +R D L+G LN F L ++ + + +F DID+FK +N Sbjct: 20 LRINSDRLEWRARASHDDLTGQLNRRYFFDELPVQIKQHQHDFRPAFLFMLDIDHFKTVN 79 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILAND 198 DN+GHPVGD+++ ++ RLGGEEFA A+AL + E A L N Sbjct: 80 DNYGHPVGDRLLELYGKEINGFLRKDDLGFRLGGEEFALVIHDASALTAVE-AAERLKNQ 138 Query: 199 LRKI-IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 L ++ + ++ NIS T S GIAE + + + + RADQALY AK GRN+VV Sbjct: 139 LGQLSVVDNHNNISR------TCSIGIAELQRADDVHSWLKRADQALYRAKDQGRNQVV 191 >gi|156933425|ref|YP_001437341.1| hypothetical protein ESA_01243 [Cronobacter sakazakii ATCC BAA-894] gi|156531679|gb|ABU76505.1| hypothetical protein ESA_01243 [Cronobacter sakazakii ATCC BAA-894] Length = 556 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 15/161 (9%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N AF + +E S++ D+D+FK IND +GH GDKV+ + + Sbjct: 395 DTLTRLYNRGAFFERARMAAKTCFAQSEPFSVIQLDLDHFKSINDRYGHQAGDKVLTWAA 454 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L GR+GGEEF G++ A +A +R+ I + +I + +I I+ Sbjct: 455 GMLSRSLRAQDVAGRVGGEEFCVILPGTTADGARQVAERIRQRINSQEILVRPDTTIRIS 514 Query: 220 ISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRV 255 +S G++E E + +I AD LY+AK+ GRN+V Sbjct: 515 VSVGVSEARRDGDYDFEHLQSI---ADHRLYLAKQRGRNQV 552 >gi|77361535|ref|YP_341110.1| two-component response regulator [Pseudoalteromonas haloplanktis TAC125] gi|76876446|emb|CAI87668.1| putative two-component response regulator [Pseudoalteromonas haloplanktis TAC125] Length = 299 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 17/172 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ ID L+ + N +L N LS++ DID+FK+ ND +GH GD Sbjct: 130 LEMLASIDGLTEIPNRRNLDENLSREWRKSKRNNTPLSVLLMDIDHFKRYNDTYGHRAGD 189 Query: 153 KVIAFLSDQLVVV--FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + ++ L G+ F+ R GGEEFAA G + EA AN LR + + +NI Sbjct: 190 DCLKAVAQALAAQCERGSD-FIARYGGEEFAAVLPGVDKAEATGFANKLRNAV--NALNI 246 Query: 211 SSGPSI---HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + S+ H+TIS G+A E E ++ AD LY AK+ GRN+VV Sbjct: 247 AHKASLNAEHVTISIGVASTENASIETEQALLEEADLGLYAAKEGGRNQVVA 298 >gi|85710375|ref|ZP_01041440.1| hypothetical protein NAP1_15858 [Erythrobacter sp. NAP1] gi|85689085|gb|EAQ29089.1| hypothetical protein NAP1_15858 [Erythrobacter sp. NAP1] Length = 509 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 8/169 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 + + +LS D LS L N A L S+ +E+++I D+D FKQ+ND+FGH +GD++ Sbjct: 57 HELEELSETDTLSKLPNRRALHGDLESFSKGDEEVAIALIDLDRFKQVNDHFGHAIGDRL 116 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I + L + G RLGG+EFA A G IL R ++E Q + G Sbjct: 117 IQECAAMLQNICGDEARCYRLGGDEFAVAMAGRV--SGTILEGMCRSLLEQLQAPVPVGK 174 Query: 215 -SIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I + S G++ + P S ++ R+D A+ V+K+ G+ R F++ Sbjct: 175 YDISVGASIGLSRSTADRRLPSSEMLRRSDVAMSVSKRDGKMRCTWFNE 223 >gi|241767182|ref|ZP_04764937.1| diguanylate cyclase [Acidovorax delafieldii 2AN] gi|241362200|gb|EER58262.1| diguanylate cyclase [Acidovorax delafieldii 2AN] Length = 273 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 98/210 (46%), Gaps = 31/210 (14%) Query: 66 VENLSLVIISITISLLLGYIS-----GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 V LS+V+ +T LL + +EL + + +R D L+GLLN F + Sbjct: 71 VHRLSVVLNGMTRRLLAANEAMEEKVRQRTQELEAANRELDTQARSDPLTGLLNRRGFGA 130 Query: 121 SLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L L++V D+D+FK IND GH VGD+V+ L+ L V Sbjct: 131 QLDFALALARRGRRPLAMVALDVDHFKHINDTHGHDVGDQVLQRLASTLRERLRDSDVVA 190 Query: 174 RLGGEEFAA----AALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC 228 RLGGEEF A L +E A R +++ I P + T+SAG++ Sbjct: 191 RLGGEEFVALLPDTDLAGAEATA-------RTLVQT--IAAQEDPVVGRFTVSAGVS--A 239 Query: 229 HKEPIS---TIIYRADQALYVAKKSGRNRV 255 + P+ ++ R+DQALY AK GRNRV Sbjct: 240 LRNPLDNGPALLRRSDQALYEAKGQGRNRV 269 >gi|229916953|ref|YP_002885599.1| diguanylate cyclase [Exiguobacterium sp. AT1b] gi|229468382|gb|ACQ70154.1| diguanylate cyclase [Exiguobacterium sp. AT1b] Length = 358 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/213 (32%), Positives = 101/213 (47%), Gaps = 12/213 (5%) Query: 54 GLTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112 GLT + +LV +S I I ITI + Y+ +KE IS + D L+GL Sbjct: 151 GLTEYAAYVALLVTLISFPIGILITIMNIDLYLINHRVKEYKIS-------AETDHLTGL 203 Query: 113 LNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 N A+ + E+ +++ DID+FKQIND +GH GD+++ S+ L Sbjct: 204 ENRRAWEMQMKKIKERYDTCNVLILDIDHFKQINDRYGHANGDEILKQFSELLHRETRDH 263 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 R+GGEEF S+ E +A +R I + IHI++S GIA Sbjct: 264 DIKARIGGEEFGILIPMLSQSEVIGVAERIRSSISKHAFKLLDQQVIHISVSIGIAN-GK 322 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 E + +++ AD LY AK SGRNR +E Sbjct: 323 SEQLHEMVHLADDCLYQAKNSGRNRTHIHGGVE 355 >gi|167035253|ref|YP_001670484.1| diguanylate cyclase [Pseudomonas putida GB-1] gi|166861741|gb|ABZ00149.1| diguanylate cyclase [Pseudomonas putida GB-1] Length = 360 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 16/188 (8%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 L LG++ + +L R+S LS D L+GLLNH A+ + I Sbjct: 162 PLALGWVCYQLAIKLGDHKRRLSALSLTDSLTGLLNHGAWKDLLLLKFQACKQQQGHAVI 221 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID+FK IND FGH VGD V+ LS +L GR GG+EF +SE + Sbjct: 222 ALIDIDHFKTINDTFGHVVGDCVLRQLSVELRRNLREGDQAGRYGGDEFCVILPDTSEAQ 281 Query: 192 AAILANDLRKII---ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 A LR+ + N Q+ P + I++S G++ E + +AD+ALY A Sbjct: 282 ACHAMERLREQVSSYRNPQL-----PHLRISLSIGLSPFEAGLESPEHWLEQADKALYTA 336 Query: 248 KKSGRNRV 255 K +GR++V Sbjct: 337 KHAGRDQV 344 >gi|20808701|ref|NP_623872.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter tengcongensis MB4] gi|20517340|gb|AAM25476.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) [Thermoanaerobacter tengcongensis MB4] Length = 553 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 10/173 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148 Y +++ S D L+ N F +L NE +S++ FD+D FKQIND +GH Sbjct: 381 KYYEVTRKSITDPLTKTYNRRYFNDALMENIMRADENNEPVSLIMFDLDNFKQINDTYGH 440 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD+V+ ++ ++ + V R GGEEFA + ++A ++A +R + + I Sbjct: 441 LIGDEVLKEVARRIKNNVRSNDIVARFGGEEFAVILPKLTAEQAYMIAERIRTEVSSKPI 500 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259 G I++TI+ G+A+ K + ++ AD+ALY KS GRN++ + Sbjct: 501 KTEKG-DIYVTITGGVADYPSKADSAEKLVSHADRALYAGGKSKGRNKIAIYE 552 >gi|296389756|ref|ZP_06879231.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] Length = 401 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 96/197 (48%), Gaps = 16/197 (8%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLG 123 LV++ + +L Y+ +E F+ + ++ D L+GL+N + G Sbjct: 199 GLVVLICSFAL---YLQDYAQREQFLGRRLLGMMAEQDSLTGLVNRRYYELLAQRALEQG 255 Query: 124 SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181 + EK ++++ D+D FK ND++GHP GD + L L P+ RLGGEEFA Sbjct: 256 AREEKGVALILVDVDDFKAYNDHYGHPAGDAALRQLGVVLRQGARRPLDIAARLGGEEFA 315 Query: 182 AAALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIY 238 S E +A LR+ +E + S+GP ++TIS G+A + + Sbjct: 316 VLLYDSEEGNTLAIAERLRQAVEALGIEHLGSSAGP--YLTISLGVAYSTSGMGLDALYR 373 Query: 239 RADQALYVAKKSGRNRV 255 AD+ALY AK +GRN V Sbjct: 374 EADRALYEAKDAGRNAV 390 >gi|209809804|ref|YP_002265343.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] gi|208011367|emb|CAQ81825.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] Length = 525 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 9/192 (4%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128 I SL + YI + + I +N I +L+ D L+GL+N F + + K Sbjct: 334 ILFSLCMSYIIAQLQLKKRIDHNEIRKLAHHDSLTGLINRGYFKKLFHWKMQHARRFESK 393 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L++++ D+D FK +ND+FGH VGD + +S L F +V R+GG+EFA + Sbjct: 394 LALIYIDLDGFKDLNDSFGHSVGDLALKAISKNLEYAFSINAYVSRIGGDEFAVLIYDVN 453 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVA 247 + + I + + + + + + + S G+A H I+ +++ AD+A+Y Sbjct: 454 DTQEVIAQVEAYLYLSHQPLTLDDKQYM-LNTSIGVAFFPEHGTNINALMHNADEAMYYI 512 Query: 248 KKSGRNRVVCFS 259 K+SG+N FS Sbjct: 513 KRSGKNGFQIFS 524 >gi|197336122|ref|YP_002156327.1| ggdef family protein [Vibrio fischeri MJ11] gi|197317612|gb|ACH67059.1| ggdef family protein [Vibrio fischeri MJ11] Length = 505 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 12/191 (6%) Query: 76 ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125 +TIS+L+ ++ + ++ L I + ++ D L+GLLN A + Y Sbjct: 314 LTISMLIAALTSVVTRDKQRIENLLEIRTKELRYMAMHDDLTGLLNRRAIRDVISRYIET 373 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + +++ FDID FKQIND +GHP GD V+ + + G +V RLGG+EF+ Sbjct: 374 KKSFALLCFDIDKFKQINDTYGHPEGDAVLRHIGHLMSETLGNNAYVSRLGGDEFSIVMK 433 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 +S E +++ + ++ S + + I TIS G A E + ++ ADQALY Sbjct: 434 LNSIDELTLISEQIHDLVATSP-TVLNDFDIAQTISLG-AVLWKGESLEGLLKAADQALY 491 Query: 246 VAKKSGRNRVV 256 +K GRN+V Sbjct: 492 QSKAMGRNQVT 502 >gi|217976674|ref|YP_002360821.1| diguanylate cyclase [Methylocella silvestris BL2] gi|217502050|gb|ACK49459.1| diguanylate cyclase [Methylocella silvestris BL2] Length = 738 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 76/155 (49%), Gaps = 11/155 (7%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F +L + YN LS+V FDID+FK IND GH VGD V+ LS Sbjct: 568 DPLTGLFNRMKFDQALAAEILRANRYNRPLSLVLFDIDHFKNINDLHGHQVGDNVLVQLS 627 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + R GGEEF S+ Q A A +LR I + + +T Sbjct: 628 RIAAAHIRGTDVLARWGGEEFVILVPESNGQMAYQTAENLRNAIGQAVFEKAGA----VT 683 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 S G+AE + ++I RAD A+Y AK GRN+ Sbjct: 684 CSFGVAEYVDGDAAESLISRADAAMYRAKIKGRNQ 718 >gi|127514309|ref|YP_001095506.1| diguanylate cyclase [Shewanella loihica PV-4] gi|126639604|gb|ABO25247.1| diguanylate cyclase [Shewanella loihica PV-4] Length = 622 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 13/181 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 L+EL + ++++ + +D L+G+ N +AF L + L+I+ DID FK I Sbjct: 439 LRELNEANQKLTEQNTVDSLTGVKNRAAFEKRLQAEGRLSRRQQTPLAILMIDIDRFKAI 498 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD+ + ++ L P V R GGEEFA +S A +A +R Sbjct: 499 NDTYGHLAGDQALKTIAQALKEKLRRPSDLVSRFGGEEFAMILPNTSCDGALQVAELMRS 558 Query: 202 IIENSQINISSG-PSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + S++ ++ G +I +TIS GI + ++ +AD+ALY AK GRNRV + Sbjct: 559 TV--SELPLAWGEQAIPLTISIGICAEVIVDDQHTQLLVDQADKALYRAKHEGRNRVCVY 616 Query: 259 S 259 S Sbjct: 617 S 617 >gi|315644133|ref|ZP_07897303.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus vortex V453] gi|315280508|gb|EFU43797.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus vortex V453] Length = 331 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 12/168 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS----YNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N F L YN+ S+ DIDYFK++ND +GH VGD+V Sbjct: 163 ELSNTDKLTGLKNRRFFQEQLEEQLRLYNQSGRPFSLFLIDIDYFKRVNDTWGHAVGDEV 222 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L V R GGEEF G EA +A R+ + ++ S Sbjct: 223 LVDVAGILKSCAREGDVVARYGGEEFVMILPGLDVAEAREIAEQFRRAVNDAIWTTGS-- 280 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ITIS G+ ++ + ++ +ADQALY +K++GRN+V D++ Sbjct: 281 ---ITISIGMITATPEDHEAALLQKADQALYASKQNGRNQVTHHVDLK 325 >gi|239832267|ref|ZP_04680596.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239824534|gb|EEQ96102.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 263 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F +L Y + + ++ D+D+FK +ND +GH VGD V+ + Sbjct: 107 DSLTGMQNRRYFDEALKEYLVQFDRIHRPVGLMIIDLDHFKTVNDTYGHDVGDIVLQEAA 166 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V RLGGEEFA A + LAN +RK I +I++ + +T Sbjct: 167 RCLRDYTRYHDVVARLGGEEFAVLAPNMDAELMIKLANRIRKAISALEIDLGD-EKLGVT 225 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+A +E + RAD+ LY AK GRNRV Sbjct: 226 VSIGLAIWDRRETSKDLYRRADKMLYAAKNMGRNRV 261 >gi|237799012|ref|ZP_04587473.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021866|gb|EGI01923.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 308 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 8/160 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ N A SL + + LS++ DID+FK++ND +GH GD V+ ++ Sbjct: 150 DSLTDTGNRIAMDQSLAREIEVSRRHKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVA 209 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A ++ LR+ + + + P++++T Sbjct: 210 HSLKTQLRNIDRVFRYGGEEFVVILSNTDSDSAELIGERLRQAVRDLEFQ-ELDPTLNMT 268 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S G + E +++ RAD ALYVAK+ GRNR+ S Sbjct: 269 VSLGCSTLLSTETADSLLRRADNALYVAKRQGRNRLAMAS 308 >gi|254492493|ref|ZP_05105665.1| GGDEF domain protein [Methylophaga thiooxidans DMS010] gi|224462385|gb|EEF78662.1| GGDEF domain protein [Methylophaga thiooxydans DMS010] Length = 713 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 8/161 (4%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F +L LS++ DID+FK+ ND +GH GD + ++ Sbjct: 544 DSLTGLRNRRFFDDALSRDIQLAEREQTALSLLICDIDHFKRFNDEYGHEAGDVALQSVA 603 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L F RLGGEEF +S +A + A L + I + I+ + +T Sbjct: 604 AKLKQQFRQSDIPCRLGGEEFVVLMREASLDDARVKAEKLLEAIAENHIDYDNEKLGPLT 663 Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259 +SAG+A EP ++ +AD+ALY AK++GRN VV F Sbjct: 664 VSAGVASWRGDEPDAEALLRKADKALYKAKQTGRNCVVVFE 704 >gi|218548932|ref|YP_002382723.1| diguanylate cyclase YddV [Escherichia fergusonii ATCC 35469] gi|218356473|emb|CAQ89096.1| putative diguanylate cyclase YddV [Escherichia fergusonii ATCC 35469] Length = 463 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%) Query: 88 SILKELF--ISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDY 138 ++L+ELF +S + + +D L+ LLN + F + N LS + D+D Sbjct: 284 TLLRELFEEVSKHEVG----MDVLTKLLNRRFLPTIFKREIAHANRVSTPLSTLIIDVDK 339 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+IND +GH GD+++ +S + +V R GG+EF +SE + +A Sbjct: 340 FKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFVIVLTEASENDTLRIAER 399 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV + Sbjct: 400 IRSRVEKTKLKAANGDDIPLSLSIGAAMFNGHPDYERLIQMADEALYIAKRRGRNRVELW 459 Query: 259 S 259 Sbjct: 460 K 460 >gi|242280956|ref|YP_002993085.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242123850|gb|ACS81546.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 333 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 10/134 (7%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIA----FLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 LS++ D+D FK +ND +GH GD V+ L + P R GGEEF Sbjct: 202 LSVIMIDVDNFKNVNDTYGHATGDAVLRSVGHILHENSRQGVDIPC---RYGGEEFVILM 258 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242 GS ++EA I+A +R E++ I+ G I IT S GIA E C + ++ AD+ Sbjct: 259 PGSEKREAEIVAERIRAACEDATISAPEG-KIKITASCGIASVEECQEPSADALLNIADK 317 Query: 243 ALYVAKKSGRNRVV 256 LY AK+SGRNRVV Sbjct: 318 RLYCAKESGRNRVV 331 >gi|167840639|ref|ZP_02467323.1| two component system fusin protein [Burkholderia thailandensis MSMB43] Length = 487 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 14/169 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+R D L+GL N AF +L LS++F DID FK ND +GH G Sbjct: 315 RLQRLARTDALTGLGNRRAFDENLRREWARALRTGRPLSLLFVDIDQFKDYNDGYGHQAG 374 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D V+ + L + V V R GGEEF + + A +A +R+ + + I Sbjct: 375 DGVLREVGRCLALNVRRAVDDVSRYGGEEFVITLPDTDAKSATAIAEHIRRAVYDLDIQH 434 Query: 211 SSGPSIHITISAGIAER----CHKEPISTIIYRADQALYVAKKSGRNRV 255 + P +T+S G+ H + +T++ AD ALY AK +GRNRV Sbjct: 435 AKSPYARVTVSIGLVTSHEHVAHSD--TTLVKMADAALYQAKSTGRNRV 481 >gi|27382262|ref|NP_773791.1| hypothetical protein bll7151 [Bradyrhizobium japonicum USDA 110] gi|27355433|dbj|BAC52416.1| bll7151 [Bradyrhizobium japonicum USDA 110] Length = 776 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 21/176 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLS-IVFFDIDYFKQINDNFGHPVG 151 RIS L+R D L+ L N +F + ++ + E+LS ++F D+D FKQ+ND GHP G Sbjct: 332 RISHLARYDDLTALPNRVSFRDEIERLLAISHHAERLSALLFVDLDQFKQVNDTLGHPCG 391 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL------RKIIE 204 D+++ ++++L + FV R GG+EF SS ++AA LA + R I+ Sbjct: 392 DQLLCAVANRLREMLRPEDFVARFGGDEFVVFQQDISSPEDAASLARRIVERLSERYRID 451 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 N + I + I +T GI+ T++ AD ALY AK GR F D Sbjct: 452 NHLVEIGASVGIALTSPDGIS-------ADTLLKNADMALYRAKADGRGTFCFFRD 500 >gi|255747077|ref|ZP_05421022.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262161378|ref|ZP_06030488.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|262167752|ref|ZP_06035454.1| GGDEF family protein [Vibrio cholerae RC27] gi|255735479|gb|EET90879.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262023817|gb|EEY42516.1| GGDEF family protein [Vibrio cholerae RC27] gi|262028689|gb|EEY47343.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] Length = 473 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N F IS + LS+ D+D+FKQ+NDN+GHP Sbjct: 312 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPA 371 Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD +V+A + V GT + R GGEEF ++QEA +R I Sbjct: 372 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 427 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S P +T+S G+ + E + + RADQA+Y AK GRN+VV Sbjct: 428 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 471 >gi|119489536|ref|ZP_01622297.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] gi|119454615|gb|EAW35762.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] Length = 738 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 90/180 (50%), Gaps = 15/180 (8%) Query: 93 LFISYNR-ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 L +YNR + ++S D L+G N L Y + S++ DIDYFK+IND Sbjct: 561 LLQTYNRKLEKISVTDPLTGCFNRLKIEECLQKQESLFNRYQQTFSVILCDIDYFKKIND 620 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH GD V+ + L +GR GGEEF A + A LA L + + Sbjct: 621 TFGHLAGDAVLMEMVTLLNQRLRDTDILGRWGGEEFMIVAPNTDLSGATTLAEALCQQLA 680 Query: 205 NSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + + I+ G H T S G+AE H+ IS +I + D+ALY AKK GRN VV + + + Sbjct: 681 DHEF-ITVG---HQTASFGVAE-FHRGSHSISHLISQVDEALYKAKKKGRNCVVAYQETQ 735 >gi|114707398|ref|ZP_01440295.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Fulvimarina pelagi HTCC2506] gi|114537279|gb|EAU40406.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Fulvimarina pelagi HTCC2506] Length = 454 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 10/173 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDN 145 L ++ R +L+ ID L+GL N S ++ S++ DID+FK+IND Sbjct: 280 LRMTLERTLELAVIDGLTGLHNRRFLNTHMSRAVTEAERRQGTFSLIVADIDHFKRINDT 339 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD V+ + +L R+GGEEFA + E+ A + A R IE Sbjct: 340 YGHDGGDIVLREFARRLEASVRASDLPCRIGGEEFAVLLPNADERTARVTAERFRAAIEA 399 Query: 206 SQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IS + +T+S G+A R +E +ST++ AD ALY AK +GRN++ Sbjct: 400 RPFIISDALELPVTVSVGLAIFPRGGQE-VSTLMRAADAALYRAKSAGRNQIA 451 >gi|219667798|ref|YP_002458233.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2] gi|219538058|gb|ACL19797.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2] Length = 389 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 11/156 (7%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ +LN FI + E+++ + DID FK+IND +GH VGD V+ + Sbjct: 228 DGLTNILNRKTFIERSNAVISLYLREQEQIAFLLIDIDDFKKINDKYGHFVGDAVLQDFA 287 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D L GR GGEEFA G+ E++ +A LR I NS ++ +G I+ T Sbjct: 288 DTLRKQLRDYDLFGRYGGEEFAILLPGTDEKQVKEVAERLRGTIANSSVD--TGLKINYT 345 Query: 220 ISAGIAE-RCHKEPISTIIYR-ADQALYVAKKSGRN 253 IS G +E ++Y+ DQALY+AK G+N Sbjct: 346 ISVGYCSITPDQETTIDMLYKLCDQALYMAKAHGKN 381 >gi|291615079|ref|YP_003525236.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1] gi|291585191|gb|ADE12849.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1] Length = 355 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 113/252 (44%), Gaps = 11/252 (4%) Query: 20 ESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79 ES +M+ F I F+ +AT + I + +GLT L + +S + I Sbjct: 90 ESLHQEVWMMIFPIAFAPIVATRERLIWIVIGAVGLTSVMMLRPEPLTTISTFVFVIAY- 148 Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132 L LG+I+ +++ + R++ LS ID L+ N I+ + L+ + Sbjct: 149 LTLGFITMMLVRHNEQNIERLAHLSIIDPLTRAYNRGYLKDVMVSEINRCRRSGQALTAI 208 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191 DIDYFK ND +GH GD V+ ++D L +V R GGEEF G + E Sbjct: 209 MLDIDYFKMFNDAYGHLYGDSVLEQVADALKRSAQRAGDYVFRYGGEEFCIITSGLNRDE 268 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKK 249 + LR I I P +T SAG A + S ++ AD ALY AK Sbjct: 269 SMQFTEKLRCCILELNIENQRSPHRRLTASAGFWCASDLGEVTPSAMLLNADNALYRAKA 328 Query: 250 SGRNRVVCFSDI 261 +GR+ VV F ++ Sbjct: 329 AGRDLVVDFDEM 340 >gi|197334284|ref|YP_002156049.1| ggdef domain protein [Vibrio fischeri MJ11] gi|197315774|gb|ACH65221.1| ggdef domain protein [Vibrio fischeri MJ11] Length = 516 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 96/179 (53%), Gaps = 32/179 (17%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPV 150 I+ L+R D L+GL N F I S S N+ SI+ DID+FK+INDN+GH V Sbjct: 353 INVLNR-DYLTGLYNRGTFHSKVSPLIKSSNSNNKFKPYSIILLDIDFFKRINDNYGHLV 411 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQI- 208 GDKVIA + + + GR GGEEF I ND+ +IE QI Sbjct: 412 GDKVIAIVGRTMAQYPN--VLAGRYGGEEFI----------LFIRDNDIESVIEFTDQIR 459 Query: 209 -NISSGPSIH--ITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSDI 261 IS+ ++H IT+SAGI +P + +I +AD+ALY +K +GRN++ + DI Sbjct: 460 TQISNYNTLHEDITLSAGIT--TINKPNVLLDDVIEQADKALYYSKHNGRNKITHYQDI 516 >gi|251794641|ref|YP_003009372.1| diguanylate cyclase [Paenibacillus sp. JDR-2] gi|247542267|gb|ACS99285.1| diguanylate cyclase [Paenibacillus sp. JDR-2] Length = 386 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 26/200 (13%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 L +++I I +LG I G +L + + + D L+G LN F++S Y Sbjct: 192 LYLVTIYILTILG-IMGFMLLWKEKTNQELLHYASYDDLTGALNRRTFMTSAKRYLNHYA 250 Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 E +S + FDID FK IND +GH +GD V+ ++ ++ R GG+EF Sbjct: 251 KKGEAVSYLLFDIDSFKDINDKYGHHIGDLVLQDVTKRIRHYLDKDDLFVRYGGDEFGIL 310 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPS---IHITISAGIA-----ERCHKEPIST 235 G EQE++ LA E +I + S P+ + TIS G+ + H E + T Sbjct: 311 LPGKGEQESSALA-------ERIKIMLQSAPTTLPVSYTISMGVLTVVPDQHTHMESMYT 363 Query: 236 IIYRADQALYVAKKSGRNRV 255 + DQALY AK++GRN + Sbjct: 364 ---KCDQALYTAKRNGRNNI 380 >gi|320158210|ref|YP_004190588.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O] gi|319933522|gb|ADV88385.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O] Length = 387 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 94/195 (48%), Gaps = 15/195 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128 I + L LG+ ++ I+ I Q S D L+ + N A +S + Sbjct: 199 IMLVLTLGFTFPWMINARLIT--NIYQTSLRDTLTNIYNRRAMEEMIPRELSRASRLGAE 256 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LSI+ D+D+FK+IND +GH VGD+ ++ + L R+GGEEF + Sbjct: 257 LSIIILDLDHFKRINDQYGHQVGDQTLSGIGQLLTSQLRKQDISFRIGGEEFLVVLPDTP 316 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISA--GIAERCHKEPISTIIYRADQALYV 246 + A ++A LR+ I ++ P T +A G+A+ + ++ RAD ALY+ Sbjct: 317 IESAVLVAEKLRQKIAETRF----APKQRETWTASFGVAQLITGDDWDALMKRADAALYL 372 Query: 247 AKKSGRNRVVCFSDI 261 AK GRNRV SD+ Sbjct: 373 AKHKGRNRVCEVSDV 387 >gi|225848049|ref|YP_002728212.1| diguanylate cyclase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644455|gb|ACN99505.1| diguanylate cyclase [Sulfurihydrogenibium azorense Az-Fu1] Length = 437 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 17/194 (8%) Query: 75 SITISLLLGYISGSILKELFI----SYNRISQLSRIDCLSGLLNH-------SAFISSLG 123 S+ + LLL I + LK LFI S + +S+++ D L+G N S S Sbjct: 239 SLAVYLLLKDIENASLKLLFILNRISLDNVSKIALKDSLTGFFNRHMLDVLLSKETSRSK 298 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + K+SI+ D+D FK IND +GH VGD+V+ S + + R GGEEF Sbjct: 299 RHGYKISILMMDLDNFKNINDIYGHLVGDEVLMHFSRIVKNNLRESDYPFRYGGEEFLIL 358 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQ 242 + E+ A ++A +RK +E+ + P I IT+S G+ E + + I AD+ Sbjct: 359 LPHTDEEGALVVAERIRKSVESYKF-----PVIERITVSCGVREIKNLDNPYIDIEEADR 413 Query: 243 ALYVAKKSGRNRVV 256 LY+AKK+G+NR V Sbjct: 414 YLYIAKKTGKNRCV 427 >gi|167033056|ref|YP_001668287.1| diguanylate cyclase [Pseudomonas putida GB-1] gi|166859544|gb|ABY97951.1| diguanylate cyclase [Pseudomonas putida GB-1] Length = 523 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 14/175 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144 ++L+E NR +Q D L+GL N + +S L + + + DID+FK++ND Sbjct: 355 NLLQERIGRLNRDAQ---TDPLTGLGNRRSLEFSLSLLEAEGRAFAAIELDIDHFKRVND 411 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N GH VGD+V+ L++ + + R GGEEF G+S + AA +A LR ++ Sbjct: 412 NHGHEVGDQVLRRLAELMRRCCREGDLLCRTGGEEFLMLLPGASLEVAAAVAERLRVTVQ 471 Query: 205 NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ + P +TIS G+A +P+ + AD+ALY AK+ GRNRV Sbjct: 472 DTPVE----PVGAVTISLGVARWDGDAGSKPMEALGL-ADRALYQAKQQGRNRVA 521 >gi|323497953|ref|ZP_08102962.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] gi|323316998|gb|EGA70000.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] Length = 489 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 112/250 (44%), Gaps = 42/250 (16%) Query: 40 ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY-- 97 A +F+ N+ + +I + P Y L SL G S ++ FISY Sbjct: 252 ACFMFVFNLSVVHIMVKPITRARYAL------------DSLSKGQSSQLTDQDTFISYEM 299 Query: 98 ----NRISQL-----SRIDCLSGLLNHSAFIS-----SLGSYNEKL--------SIVFFD 135 NRI+++ + L L H A + SL + +L S+V D Sbjct: 300 RDFVNRINEIFNQLELKQKELEWLALHDALTTVGNRRSLQQHWSRLLEGQPRCTSVVLID 359 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 ID+FK NDN+GH GDKV+ ++ L FV R GGEEF S ++ Sbjct: 360 IDFFKPFNDNYGHIEGDKVLQIVAKTLQHCDSDCDKFVARFGGEEFCVILSSDSPIDSIE 419 Query: 195 LANDLRKIIENSQINISSGP-SIHITISAGIAERCH---KEPISTIIYRADQALYVAKKS 250 AN LR IE QI P S ++TISAG+ E C + + I AD ALY AK+ Sbjct: 420 EANQLRVAIEQLQIAHEFSPISSYLTISAGVVE-CRLTSSDKLQDKIRLADAALYAAKQQ 478 Query: 251 GRNRVVCFSD 260 GRNR+V D Sbjct: 479 GRNRLVVHVD 488 >gi|294013361|ref|YP_003546821.1| putative diguanylate cyclase [Sphingobium japonicum UT26S] gi|292676691|dbj|BAI98209.1| putative diguanylate cyclase [Sphingobium japonicum UT26S] Length = 387 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 93/184 (50%), Gaps = 12/184 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140 +LK S R ++ D L+GL N AF +L + L++ F DID+FK Sbjct: 207 QLLKSNLESARRAAEH---DHLTGLPNRRAFEGTLREELAQAQKEGQPLAVAFCDIDHFK 263 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND GH GD+V+ F++ L V R GGEEF G + EA + +R Sbjct: 264 LINDTHGHDTGDRVLKFVAGLLSKASNDQCHVARHGGEEFVMLFRGKTAAEACEAVDGVR 323 Query: 201 KIIE-NSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + S +N S+G + ++ SAG+A E + AD+ALY+AK+ GRNRV Sbjct: 324 QDLSTRSLVNRSNGERMERVSFSAGVANVLAYEDPRAALKAADRALYLAKEHGRNRVYLA 383 Query: 259 SDIE 262 ++++ Sbjct: 384 AELD 387 >gi|187929770|ref|YP_001900257.1| diguanylate cyclase [Ralstonia pickettii 12J] gi|309781514|ref|ZP_07676250.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA] gi|187726660|gb|ACD27825.1| diguanylate cyclase [Ralstonia pickettii 12J] gi|308919927|gb|EFP65588.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA] Length = 555 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L F++ + E L +V D+D+FK+IND +GH VGD + + Sbjct: 399 DHLTGVLTRRRFLALFDTVLARAHNRAEPLVLVLADLDHFKRINDTWGHAVGDMALQRFA 458 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V + VGRLGGEEFA ++ + A +A LR + + + +G + +T Sbjct: 459 SLATGVLRSSDLVGRLGGEEFAMVMGRTTLETATEVAERLRTAVAETDESFPTG--LSMT 516 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+ + S ++ RAD ALY AK+SGRNR V Sbjct: 517 VSMGMTGCRPGDTASEMLKRADLALYRAKESGRNRHVA 554 >gi|127513905|ref|YP_001095102.1| diguanylate cyclase [Shewanella loihica PV-4] gi|126639200|gb|ABO24843.1| diguanylate cyclase [Shewanella loihica PV-4] Length = 650 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 87/161 (54%), Gaps = 8/161 (4%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S L+ D L+ L N + S ++ LSI+ FD D+FK++ND +GH +GD Sbjct: 485 LSILALTDHLTQLPNRRYTYSKGEGYFKSKDEGHQPLSIILFDADHFKKVNDKYGHDIGD 544 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ L++ + VGR+GGEEF G++ ++A +A L +E+S + Sbjct: 545 KVLIALANISNGLMRKQDLVGRVGGEEFLVILPGTTAEQALNVAQRLVTTVESSNFD-DV 603 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + +TISAGIA + ++ RAD ALY AK SGRN Sbjct: 604 YMNFKLTISAGIACTDGDKSFEHLLKRADDALYRAKSSGRN 644 >gi|296451175|ref|ZP_06892916.1| probable signaling protein [Clostridium difficile NAP08] gi|296880473|ref|ZP_06904435.1| probable signaling protein [Clostridium difficile NAP07] gi|296259996|gb|EFH06850.1| probable signaling protein [Clostridium difficile NAP08] gi|296428427|gb|EFH14312.1| probable signaling protein [Clostridium difficile NAP07] Length = 572 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 10/153 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ + N +F Y K ++V DID FK INDN+GH GD VI +++ + Sbjct: 425 DGLTNVYNRKSFDIMYEKYRAKDDNFALVMIDIDNFKLINDNYGHKFGDVVIKGITNTIC 484 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V+ V R GGEEF+ S +E A + +++R I N + N + +TISAG Sbjct: 485 VMLEQDDKVFRYGGEEFSVLIRNKSGEEVADIVDNIRVAIANKKWN----EDVTVTISAG 540 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +A H ++ AD+ LY AK+ GRN+VV Sbjct: 541 VA---HISDSKDVLEEADKNLYKAKQLGRNKVV 570 >gi|120601359|ref|YP_965759.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris DP4] gi|120561588|gb|ABM27332.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris DP4] Length = 827 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 9/156 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F ++ L+++ DID+FK +ND +GH GD+V+ + Sbjct: 651 DPLTGVRNRRQFFVDANREFARALRHDSGLAVLMLDIDHFKNVNDLYGHQAGDEVLRAFA 710 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V GRLGGEEFAA +S +EA A LRK +E + + G ++ T Sbjct: 711 ACCVEALRAYDVFGRLGGEEFAALLPAASPEEAMETAERLRKRVERRSV-VYEGTALQCT 769 Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254 +S G+ + ++ RAD+ALY AK GRNR Sbjct: 770 VSVGVTSLAAADLGFDDMLRRADRALYAAKDHGRNR 805 >gi|59711852|ref|YP_204628.1| GGDEF domain-containing protein [Vibrio fischeri ES114] gi|59479953|gb|AAW85740.1| GGDEF domain protein [Vibrio fischeri ES114] Length = 516 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 96/179 (53%), Gaps = 32/179 (17%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPV 150 I+ L+R D L+GL N F I S S N+ SI+ DID+FK+INDN+GH V Sbjct: 353 INVLNR-DYLTGLYNRGTFHNKVSPLIKSSNSNNKFKPYSIILLDIDFFKRINDNYGHLV 411 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQI- 208 GDKVIA + + + GR GGEEF I ND+ +IE QI Sbjct: 412 GDKVIAIVGRTMAQY--PNVLAGRYGGEEFI----------LFIRDNDIESVIEFTDQIR 459 Query: 209 -NISSGPSIH--ITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSDI 261 IS+ ++H IT+SAGI +P + +I +AD+ALY +K +GRN++ + DI Sbjct: 460 TQISNYNTLHEDITLSAGIT--TINKPNVLLDDVIEQADKALYYSKHNGRNKITHYQDI 516 >gi|27367939|ref|NP_763466.1| sensor histidine kinase [Vibrio vulnificus CMCP6] gi|27359512|gb|AAO08456.1|AE016813_208 Sensor histidine kinase [Vibrio vulnificus CMCP6] Length = 387 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 9/169 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I Q S D L+ + N A +S +LSI+ D+D+FK+IND +GH VGD Sbjct: 221 IYQTSLRDTLTNIYNRRAMEEMIPRELSRASRLGAELSIIILDLDHFKRINDQYGHQVGD 280 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + ++ + L R+GGEEF + + A ++A LR+ I ++ Sbjct: 281 QTLSGIGQLLTSQLRKQDISFRIGGEEFLVVLPDTPIESAVLVAEKLRQKIAETRFAQKQ 340 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + T S G+A+ + ++ RAD ALY+AK GRNRV SD+ Sbjct: 341 RET--WTASFGVAQLITGDDWDALMKRADAALYLAKHKGRNRVCEVSDV 387 >gi|91974548|ref|YP_567207.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91681004|gb|ABE37306.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Rhodopseudomonas palustris BisB5] Length = 743 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 14/181 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 + E + S +I+ ++R D L+GLLN AF + L + E S++ D+D FK + Sbjct: 299 ITERYRSEQQIAHMARHDLLTGLLNRGAFHERMDEACARLRRWGETFSVIMLDLDRFKLV 358 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDLR 200 ND+ GHP GD ++ + +L + RLGG+EFA + + +EA A+ + Sbjct: 359 NDSLGHPAGDALLRAVVSRLKACIRETDVLARLGGDEFAVLQTRTKDSYEEAVAFADRIV 418 Query: 201 K-IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +I+ +I G + I+ SAGIA H +I AD ALY AK +GRN V F Sbjct: 419 NCLIDPIEIE---GHQLVISTSAGIALAPQHGTDSDELIKNADLALYQAKAAGRNGYVTF 475 Query: 259 S 259 Sbjct: 476 E 476 >gi|269960040|ref|ZP_06174417.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835339|gb|EEZ89421.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 778 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 125/255 (49%), Gaps = 28/255 (10%) Query: 29 IYFSIFFSIFIA---TVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLL 82 ++ + S IA T+ I + Y+ L+P L+ L E N I + + Sbjct: 257 VWLELALSFGIASFCTITLIVLVLYRYV-LSPVSKLDKQLREIEANKRTNIEKLNSDDEI 315 Query: 83 GYISG---SILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFD 135 G +S + +EL Y++ L+ D L+ L N H L +E+L +V+ D Sbjct: 316 GRLSSRFFDMYEELNNIYHKTKHLAETDHLTQLANRHRFHELATHELADPSEQLWVVYID 375 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-------FGTPMFVGRLGGEEFAAAALGSS 188 +D FK +ND +GH +GDK++ S + V +P F RL G+EF A L ++ Sbjct: 376 LDNFKYVNDKYGHELGDKLLQVFSRHIKNVCQKFTQQHNSPCFGARLSGDEF-AILLSTN 434 Query: 189 EQEAAI---LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQAL 244 +++A I LA++L K I N ++ SS S +T S GIA+ I+ ++ AD A+ Sbjct: 435 QKKADIPDMLASELLKPIHN--LSQSSTNSFPVTASVGIAQYPRDGADIAKLLSSADAAM 492 Query: 245 YVAKKSGRNRVVCFS 259 Y AK+ G+N+ +S Sbjct: 493 YQAKRGGKNQYAYYS 507 >gi|238756376|ref|ZP_04617687.1| Predicted diguanylate cyclase [Yersinia ruckeri ATCC 29473] gi|238705390|gb|EEP97796.1| Predicted diguanylate cyclase [Yersinia ruckeri ATCC 29473] Length = 365 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 92/181 (50%), Gaps = 7/181 (3%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141 + ++ L+ + S LS ID L+GL N + LG + ++ DID+FK Sbjct: 172 TRKLVDHLYDEREKFSDLSMIDPLTGLYNRRGLENRLGMLLAQSPGNHYVLLLDIDHFKA 231 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 NDN+GH +GD+ + ++ + + V R GGEEF SE+ A+ LA +R+ Sbjct: 232 YNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQLAERVRQ 291 Query: 202 IIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + I + S +T+SAGI+ H + + AD+ALY AKK+GRN+V S Sbjct: 292 RVLGFDIPHVFNHKVSTTVTLSAGISP-LHPTDLGASLKAADEALYQAKKNGRNKVEFAS 350 Query: 260 D 260 D Sbjct: 351 D 351 >gi|228992783|ref|ZP_04152709.1| Sensory box/GGDEF family protein [Bacillus pseudomycoides DSM 12442] gi|228767115|gb|EEM15752.1| Sensory box/GGDEF family protein [Bacillus pseudomycoides DSM 12442] Length = 431 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 102/214 (47%), Gaps = 29/214 (13%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108 F+F + TP + E+LS I+ T + L EL Y QL+ ID Sbjct: 232 FVFLLRATP-------VPEDLSRFIVKCT--------DITELDEL---YQEQEQLAAIDS 273 Query: 109 LSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ + N F S N+ ++++ FDID FK++ND +GH GD + L++ Sbjct: 274 LTEIYNRLKFQQLLEEKWKSEKRVNQMMALILFDIDDFKKVNDTYGHDFGDLALIQLAEL 333 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + + R GGE+F + ++E+EA +A LR IE Q + S +T S Sbjct: 334 MKSKIASQHIFARWGGEKFIILVINTTEKEAFQVAESLRFFIETKQFSSISK----LTAS 389 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G+A +I RAD ALY AKK+G+N+V Sbjct: 390 FGVALYEQGMTKEELIQRADIALYEAKKNGKNQV 423 >gi|254517033|ref|ZP_05129091.1| diguanylate cyclase [gamma proteobacterium NOR5-3] gi|219674538|gb|EED30906.1| diguanylate cyclase [gamma proteobacterium NOR5-3] Length = 456 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 10/177 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL NR + D L+G + A+ +S Y E +V DID+FK++N Sbjct: 282 EELTQKLNRNREKLMRDTLTGAHSRLAYDEMLAQEMSRYRRYQEPFCLVMLDIDFFKRVN 341 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKI 202 D FGH GDK + ++ + ++ R+GGEEF L +E AA+ L + +R Sbjct: 342 DRFGHAAGDKALQLVASLVSDRIRETDYLFRVGGEEF-VLLLPRTELAAAVPLVDAIRSD 400 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +S + P + IT+SAG+ + TI RAD A+Y AKK+GR+R+V Sbjct: 401 VGDSGFHYDDQP-VQITLSAGVTAMRSDDTPETIFARADDAMYRAKKAGRDRLVTLD 456 >gi|149376833|ref|ZP_01894589.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter algicola DG893] gi|149358840|gb|EDM47308.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter algicola DG893] Length = 537 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L +++L DIDYFK++ND FGHP+GD+V+ LS Sbjct: 379 DSLTGLFNHTHTLHLLDQEIVRARQKDQQLCFAMIDIDYFKKVNDTFGHPIGDRVLRSLS 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L +GR GGEEFA + E +A + N++R+ + + + ++T Sbjct: 439 MFLKQRLRKTDHIGRYGGEEFAIILPDTRESDARNVLNEIRERF-SELLQPAGDREFNVT 497 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S G+A + + RAD+ALY +K GRN V D Sbjct: 498 FSCGVAA-WKGDTSQALCERADKALYRSKAEGRNCVTAAGD 537 >gi|170742454|ref|YP_001771109.1| diguanylate cyclase [Methylobacterium sp. 4-46] gi|168196728|gb|ACA18675.1| diguanylate cyclase [Methylobacterium sp. 4-46] Length = 353 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 11/176 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N F L E+ + ++ DID+FK+ ND +GH G Sbjct: 177 RVESLT--DPLTGLGNRKLFEQVLRKSVEEAAANAAPTALIILDIDHFKRFNDVYGHLTG 234 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INI 210 D+V+ ++ + + + R GGEEF SE +A LA +R + + + Sbjct: 235 DRVLRLVALTMREMVDGRATIARFGGEEFGVIMPCGSEGDAVALAERIRTSVMGRELVKR 294 Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 SSG S+ +TIS G+A + +++ RADQ ++ AK+SGRNRVV + + + T Sbjct: 295 SSGESLGRVTISVGVATHRPGDTAVSLLERADQCMFAAKRSGRNRVVVDTAVPDLT 350 >gi|324113244|gb|EGC07219.1| GGDEF domain-containing protein [Escherichia fergusonii B253] Length = 460 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%) Query: 88 SILKELF--ISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDY 138 ++L+ELF +S + + +D L+ LLN + F + N LS + D+D Sbjct: 281 TLLRELFEEVSKHEVG----MDVLTKLLNRRFLPTIFKREIAHANRVSTPLSTLIIDVDK 336 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+IND +GH GD+++ +S + +V R GG+EF +SE + +A Sbjct: 337 FKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFVIVLTEASENDTLRIAER 396 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV + Sbjct: 397 IRSRVEKTKLKAANGDDIPLSLSIGAAMFNGHPDYERLIQMADEALYIAKRRGRNRVELW 456 Query: 259 S 259 Sbjct: 457 K 457 >gi|296332333|ref|ZP_06874794.1| putative diguanylate cyclase or phosphodiesterase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673612|ref|YP_003865284.1| putative diguanylate cyclase or phosphodiesterase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150251|gb|EFG91139.1| putative diguanylate cyclase or phosphodiesterase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411856|gb|ADM36975.1| putative diguanylate cyclase or phosphodiesterase [Bacillus subtilis subsp. spizizenii str. W23] Length = 358 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 16/169 (9%) Query: 104 SRIDCLSGLLNHSAFI--------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 + D L+G+ N F + + + + ++++ DID+FK IND +GH GD+V+ Sbjct: 191 AHFDFLTGIYNRRKFEEITQVLYEQAANTPHFQFALIYMDIDHFKAINDQYGHHEGDQVL 250 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L +L R+GGEEFA + +AA +A +R + ++ I +++G Sbjct: 251 KELGSRLKQSIRNTDPAARIGGEEFAVLLPNCTLDKAAQIAERIRCAVSDTPIRLTNGEE 310 Query: 216 IHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +TIS G + H E + + ADQ LY AK++GRN+ VCFS+ Sbjct: 311 LSVTISLGASHYPNNTEHPESLPIL---ADQMLYKAKETGRNK-VCFSE 355 >gi|187926855|ref|YP_001893200.1| diguanylate cyclase [Ralstonia pickettii 12J] gi|241665184|ref|YP_002983543.1| diguanylate cyclase [Ralstonia pickettii 12D] gi|187728609|gb|ACD29773.1| diguanylate cyclase [Ralstonia pickettii 12J] gi|240867211|gb|ACS64871.1| diguanylate cyclase [Ralstonia pickettii 12D] Length = 338 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 12/175 (6%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 F + ++ + D L+G+L F + + E L ++ D+D+FK IND + Sbjct: 161 FAAERSLADRANTDHLTGMLARQRFFELGGFAVERARHHAEPLCALYLDVDHFKTINDTW 220 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+ + LS+ L V GRLGG+EFA G + + + ++ + S Sbjct: 221 GHAAGDEALVALSEALARVLRPKDLFGRLGGDEFAVLLPGCGLDDTLAVVDRIKAAVAAS 280 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + + GP +TIS G A + ++ ++ AD L AK+ GRNRV SD+ Sbjct: 281 ESPV--GP---LTISVGAAPLRRGQDLARLLADADVGLMEAKRQGRNRVCVPSDL 330 >gi|150018143|ref|YP_001310397.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] gi|149904608|gb|ABR35441.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] Length = 568 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 6/139 (4%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S++ DID+FK++ND +GH GD V++ + + + R GGEEF A + Sbjct: 434 VSMLVLDIDHFKKVNDTYGHSTGDLVLSETAMIIKQCLRKEDILVRWGGEEFVAVLPFTD 493 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 +E+ I+A +R IEN + + IT+S GIAE+ E + RAD ALY AK Sbjct: 494 SKESTIIAETIRLSIENHKFKFVN----KITVSIGIAEKDVVEDFHSWFRRADNALYNAK 549 Query: 249 KSGRNRV-VCFS-DIENNT 265 ++GRN V +C++ +I NN+ Sbjct: 550 ENGRNTVCICYTNEIRNNS 568 >gi|118467440|ref|YP_886551.1| sensory box/response regulator [Mycobacterium smegmatis str. MC2 155] gi|118168727|gb|ABK69623.1| sensory box/response regulator [Mycobacterium smegmatis str. MC2 155] Length = 615 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 9/172 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPV 150 + R+ L+ D L+GL N A ++ L + ++++FFD+D K IND GH Sbjct: 171 AEERLRYLADHDHLTGLYNRRALMAHLEARLAPGQPGPVAVMFFDLDRLKAINDYLGHTA 230 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQIN 209 GD I+ L+ +L P + RLGG+EF S EA LA L+ ++ ++ Sbjct: 231 GDAFISILAQRLQRGDDAPKLIARLGGDEFVVVPDDPMSLDEATALAYRLQSVLRE-RVT 289 Query: 210 ISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G + T+S GIA+ K+ S ++ RAD A+ AK SG NRV FSD Sbjct: 290 V-DGEMLTRTVSIGIAQGIPGKDSTSDVLNRADHAVLTAKGSGGNRVAVFSD 340 >gi|89897267|ref|YP_520754.1| hypothetical protein DSY4521 [Desulfitobacterium hafniense Y51] gi|89336715|dbj|BAE86310.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 232 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 18/224 (8%) Query: 48 IFLFYIGLTPFYGL---EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLS 104 +F+ IGL FY +++ N +L+I I + G + + +N++ + Sbjct: 6 LFIGMIGLGIFYAWFSHLFMIPLNNNLLIHCIILGFSFGLTNFLLANFYLYKHNKLKNQN 65 Query: 105 RI-------DCLSGLLNHSAFISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIA 156 I D L+GLLN A L S NE + S++F DID F+ N+ +GH GD V+ Sbjct: 66 EILKSRLTTDKLTGLLNRRALDLELNSSNELIYSVIFIDIDNFRVFNNQYGHKAGDTVLR 125 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +S+ + R GGEE +++ A +A +R I+ +S+ P Sbjct: 126 KVSETIETTIRVGDRAYRYGGEEIVIILKDCNQKNAQRIAEKIRTRID----MLSNDPYP 181 Query: 217 HITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258 ITIS G+A C + EPI +I +AD AL AK +G+NR + F Sbjct: 182 QITISLGVAS-CSEESEPIQDVIEKADFALLQAKGAGKNRTIVF 224 >gi|226357254|ref|YP_002786994.1| regulator protein [Deinococcus deserti VCD115] gi|226319244|gb|ACO47240.1| putative regulator protein, GGDEF domain; putative membrane protein [Deinococcus deserti VCD115] Length = 361 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 11/157 (7%) Query: 106 IDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ + N + L S E L ++ FD+D FK IND +GH GD+V+ Sbjct: 206 LDVLTNVANRRQLMLWLTSRQNRAETTGEPLCVILFDLDRFKHINDTYGHDYGDEVLKRT 265 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + GR GGEEF ++ EA +A +R + + ++ + + Sbjct: 266 AAAVAGALRRGTLFGRWGGEEFLVVLPATARGEARGVAERIRHSVAEVRYDLP----VQV 321 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+A+ E + ++ RAD+A+Y AK +GRN+V Sbjct: 322 TVSLGVAQAQPGENLQALLKRADEAMYAAKHAGRNQV 358 >gi|326797147|ref|YP_004314967.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea MMB-1] gi|326547911|gb|ADZ93131.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea MMB-1] Length = 790 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 42/261 (16%) Query: 31 FSIFFSIF---IATVIFIANIFLFYIGLTPFYGLEYI---LVENLSLVIISITISLLLGY 84 +S+ F IF +A V+ + IF LTP L Y+ + +N IT G Sbjct: 270 YSLIFMIFTGVVAAVLLLLRIFFLNSILTPLNTLSYMTFRIGQNEK-----ITYKAATGV 324 Query: 85 ISGSILKELFISY--------NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 L+ FIS ++ Q ++ D L+G N F +L YN+K Sbjct: 325 KEMDELQNRFISMAEKKEQAEKKMIQQAQTDLLTGAGNRERFNKALFEQLREAKVYNQKF 384 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ D+D FK++ND GH VGD+++ + +L+ + + RLGG+EF G++ Sbjct: 385 ALLLIDLDLFKEVNDTRGHQVGDEILRITAKRLMALCPKQQLICRLGGDEFIFLLSGTNV 444 Query: 190 QEAAI------LANDLRKIIENSQ--INISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 + + + +R+ E SQ I++S + + G+ ER ++ AD Sbjct: 445 NKEYVHDFCQNIQTQVRQPFEFSQGEIHVSCSIGVAMYPEDGVDER-------EVMAAAD 497 Query: 242 QALYVAKKSGRNRVVCFSDIE 262 QALY AK++GRN V F D+E Sbjct: 498 QALYSAKRAGRNEVKDF-DVE 517 >gi|152996744|ref|YP_001341579.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150837668|gb|ABR71644.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 714 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 80/165 (48%), Gaps = 10/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + + S D L+GL N F I++ E LS++ DIDYFK ND +GHP Sbjct: 544 EELQRFSYEDELTGLKNRRFFSEVMEHEITAAEQNQEPLSLLICDIDYFKTFNDTYGHPA 603 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + L+ L F V RLGGEEF ++ A +LR +E +QI Sbjct: 604 GDEALKTLASLLSPFFYEGNIVCRLGGEEFVVVMPRVKREDCLRKAEELRAAVEKTQIEY 663 Query: 211 SSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRN 253 +ITIS GI+ +P + + D ALY AK+SGRN Sbjct: 664 EGHLLENITISIGISSWPELISDP-RQLFQQTDSALYQAKESGRN 707 >gi|16126093|ref|NP_420657.1| GGDEF family protein [Caulobacter crescentus CB15] gi|221234863|ref|YP_002517299.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13423291|gb|AAK23825.1| GGDEF family protein [Caulobacter crescentus CB15] gi|220964035|gb|ACL95391.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 353 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 85/176 (48%), Gaps = 24/176 (13%) Query: 100 ISQLSR---IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 + Q+ R D L+ L N AF L + + DID+FK ND +GH Sbjct: 173 LEQVRRDATTDGLTNLANRKAFDDELDRACAEAEEGGTTICLAVLDIDHFKGFNDTWGHQ 232 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI------- 202 GD+VI +++ + V P F R GGEEF A+ + A+++A L +I Sbjct: 233 TGDQVIRYVASVIGRVAAPPRFAARYGGEEF---AMIFPREAASVVATTLEEIRVEVSSR 289 Query: 203 -IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ N G IT+S+G AER E +++ RAD ALY +K+ GRNRV Sbjct: 290 MLKRRSTNEDLGA---ITVSSGFAERKPGESGHSVMERADAALYASKRGGRNRVTA 342 >gi|317129799|ref|YP_004096081.1| diguanylate cyclase with GAF sensor [Bacillus cellulosilyticus DSM 2522] gi|315474747|gb|ADU31350.1| diguanylate cyclase with GAF sensor [Bacillus cellulosilyticus DSM 2522] Length = 564 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 14/177 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 +Y + + S L+ L N F + L +++ +I+ D+D+FK+INDN+GH Sbjct: 388 NYEKTKKDSERCALTNLFNFRYFENRLLEKYDVPEKDDQFAIILLDLDHFKKINDNYGHQ 447 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS--- 206 G+ ++ ++ L GT + R GGEEF G + Q A +A LR+ IE+ Sbjct: 448 SGNDILCQVAHLLQESVGTSGVLARYGGEEFVVLLEGDTAQYAEDMAETLRQNIESQLFK 507 Query: 207 ---QINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYV-AKKSGRNRVVCF 258 +N G + IT S G+A + + + R AD+A+Y AK+ GRN+V + Sbjct: 508 VSDDLNSGDGKLVRITASIGVATKLENDETGMSVLRNADRAMYTGAKQQGRNKVAYY 564 >gi|94972207|ref|YP_594247.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300] gi|94554258|gb|ABF44173.1| diguanylate cyclase, GAF, HAMP domains protein [Deinococcus geothermalis DSM 11300] Length = 555 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q S D L+GL N + ++ + + LS++ D+D+FKQ ND +GH +GD Sbjct: 379 LRQQSIRDPLTGLYNRRYLEETFTRELARVQRRRQPLSLLMIDVDHFKQHNDTYGHALGD 438 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ L+ L F T V R GGEEF +A A LR+ +EN + + Sbjct: 439 TLLRRLATHLQRFFRTEDIVCRYGGEEFVVLLPECDAPQAQARAEALRRSVENLAVTSND 498 Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255 + +TIS G A H ++ RAD ALY AK GRNRV Sbjct: 499 AEFVALTISIGGASWPDHATTPEDLLARADAALYRAKHRGRNRV 542 >gi|39936049|ref|NP_948325.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009] gi|39649903|emb|CAE28425.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris CGA009] Length = 383 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 13/215 (6%) Query: 50 LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR---I 106 +F +G++P G + + S+ ++ +SL + + ++ + I L R + Sbjct: 170 VFTVGVSPPSGGPLVFAD--SVFWQTLQLSLAVLGAALAMAILAAAVSDLIDDLRRERDL 227 Query: 107 DCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GLLN F + + E S++ D+D+FK IND FGH VGD V+ + L Sbjct: 228 DHLTGLLNRRGFEEEIAAPMRRAPEGASLILCDVDHFKSINDTFGHDVGDVVLKEIGAIL 287 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITIS 221 VGR GGEEFA +S +A A LR+ I NS+I + + P +T S Sbjct: 288 RKTARKGDLVGRWGGEEFAVFLPDASLSDATECAERLRQTIANSRIPGLDTRP---VTAS 344 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+A + + AD LY+AK SGR+R V Sbjct: 345 FGVATIREAGDWTALYKLADSRLYLAKASGRDRTV 379 >gi|320201820|gb|EFW76396.1| hypothetical protein ECoL_01053 [Escherichia coli EC4100B] Length = 296 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S E L++ + DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|311106854|ref|YP_003979707.1| response regulator receiver modulated diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310761543|gb|ADP16992.1| response regulator receiver modulated diguanylate cyclase [Achromobacter xylosoxidans A8] Length = 337 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 11/177 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 ++L S + +L+ D L+GL N F L + ++ +S++ D+D+FK N Sbjct: 157 QQLLESNMELRRLTNSDGLTGLGNRRYFDEYLNAEWQRARRDGREISMLMIDVDHFKAYN 216 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD+ + +++ + R GGEEFA G+ A + A LR+ Sbjct: 217 DTYGHIAGDEALKRVANTIFASCDRSTDLAARFGGEEFALVLPGTPAGSARLAAEKLRRA 276 Query: 203 IENSQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +E QI + GP + ++I A ++P + +I AD+ LY AK+ GRNRVV Sbjct: 277 VEALQIPQKDTGDGPWLTVSIGTATAVPQGEQPCTDLIQVADRGLYQAKRQGRNRVV 333 >gi|120611590|ref|YP_971268.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gi|120590054|gb|ABM33494.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 250 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 95/197 (48%), Gaps = 8/197 (4%) Query: 62 EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121 E +L E LV S L + ++ + + + R + D L+G+LN +A I Sbjct: 49 ERLLRETRRLVRRSDRAELEMNQLNQQLTELAEQLHYRATH----DPLTGVLNRAAIIEQ 104 Query: 122 LGSYNEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 + E S+ + DID+FK++ND+FGHPVGD VI + D+L V +GR+GGEE Sbjct: 105 VNGRFETGSVALIVLDIDHFKKVNDSFGHPVGDSVIRGVVDRLKSVVPGSAQIGRVGGEE 164 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F +A R+ IE + G +T S G++ Sbjct: 165 FTVLLPEEDAMACERVAEAARRAIEGFDFGLPDGS--RVTASFGVSWLPGGCVFDDAYGL 222 Query: 240 ADQALYVAKKSGRNRVV 256 AD+ALY AK++GRNRVV Sbjct: 223 ADEALYGAKRAGRNRVV 239 >gi|71737249|ref|YP_275815.1| GGDEF domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557802|gb|AAZ37013.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323358|gb|EFW79446.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320327555|gb|EFW83567.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330876550|gb|EGH10699.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 308 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + + LS++ DID+FK++ND +GH GD V+ ++ L V R GGEEF Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + A ++ LR+ + N + P++ +T+S G + E +++ RAD AL Sbjct: 235 SNTGASSAELIGERLRQAVRNLEFR-ELDPALTMTVSLGCSTLLPTETADSLLRRADNAL 293 Query: 245 YVAKKSGRNRVVCFS 259 YVAK+ GRNR+ S Sbjct: 294 YVAKREGRNRLAMAS 308 >gi|51246161|ref|YP_066045.1| hypothetical protein DP2309 [Desulfotalea psychrophila LSv54] gi|50877198|emb|CAG37038.1| hypothetical protein DP2309 [Desulfotalea psychrophila LSv54] Length = 660 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 18/211 (8%) Query: 63 YILVENLSLVIISITISLLL--GYISGSIL-----KELFISYNRISQLSRIDCLSGLLNH 115 YI ++ ++ +S+TIS + G ++G+I+ E ++ ++ + D ++G N Sbjct: 447 YIPQKDGQIIPVSLTISPMYNQGTVTGAIIIFQDIAERLLAEEQLKLAASHDSMTGAKNR 506 Query: 116 SAFISSLG-----SYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 + + S +K + F DIDYFK+IND++GH VGD+V+ +S + Sbjct: 507 AELERLMDLEIEQSARKKTACTFLMIDIDYFKKINDSYGHLVGDQVLKEMSHYIRSTLRK 566 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAER 227 GR GGEEF Q + +A LR I ENS N + + +T+S G+A Sbjct: 567 SDIFGRYGGEEFVIILPQEDLQHSRKIAERLRLGIKENSLQNNTLKKA--MTVSIGLASY 624 Query: 228 C-HKEPISTIIYRADQALYVAKKSGRNRVVC 257 H I+ +AD+ALY+AKK GR+R+V Sbjct: 625 PEHGRTSKDILLQADEALYIAKKQGRDRIVT 655 >gi|309389469|gb|ADO77349.1| diguanylate cyclase [Halanaerobium praevalens DSM 2228] Length = 513 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/131 (42%), Positives = 72/131 (54%), Gaps = 4/131 (3%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 YN + + FDIDYFK +NDN+GH GD+++ LS+ + GR GGEEF A Sbjct: 384 YNSSFAFIIFDIDYFKNVNDNYGHDEGDRILKELSELIKNNIRQSDHFGRWGGEEFVLLA 443 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + + A LA LRK I + N + IT S GIA ++E I +I RAD AL Sbjct: 444 PETELKAAYKLAEKLRKAI--AAYNFIQAEN--ITASFGIAVIENEENIEELIKRADNAL 499 Query: 245 YVAKKSGRNRV 255 Y AK GRNRV Sbjct: 500 YRAKAKGRNRV 510 >gi|218548895|ref|YP_002382686.1| hypothetical protein EFER_1540 [Escherichia fergusonii ATCC 35469] gi|218356436|emb|CAQ89059.1| conserved hypothetical protein, putative diguanylate cyclase (GGDEF) [Escherichia fergusonii ATCC 35469] Length = 321 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 104 SRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L + EK ++ DID FK +ND GH +GD V+ L Sbjct: 139 SNMDILTGLPGRRVLDESFDRQLLNAEPEKFYLLLLDIDRFKSVNDTLGHLIGDVVLRTL 198 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ L V R GGEEF S++ +A + + ++I +QI G +HI Sbjct: 199 AENLATWMRHNESVYRYGGEEFVIMIKASTDVDACMAGLRICELIAGNQIAYPQG-ELHI 257 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T +AGI+ E + ++ RAD+A+Y K +GRNR + + E Sbjct: 258 TATAGISRAKPGETLDVVMGRADRAMYQGKLTGRNRCMFMDENEQ 302 >gi|37676066|ref|NP_936462.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|37200606|dbj|BAC96432.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 387 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 13/171 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I Q S D L+ + N A +S +LSI+ D+D+FK+IND +GH VGD Sbjct: 221 IYQTSLRDTLTNIYNRRAMEEMIPRELSRASRLGAELSIIILDLDHFKRINDQYGHQVGD 280 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + ++ + L R+GGEEF + + A ++A LR+ I ++ Sbjct: 281 QTLSGIGQLLTSQLRKQDISFRIGGEEFLVVLPDTPIESAVLVAEKLRQKIAETRF---- 336 Query: 213 GPSIHITISA--GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 P T +A G+A+ + ++ RAD ALY+AK GRNRV SD+ Sbjct: 337 APKQRETWTASFGVAQLITGDDWDALMKRADAALYLAKHKGRNRVCEVSDV 387 >gi|332091306|gb|EGI96395.1| hypothetical protein SB521682_1755 [Shigella boydii 5216-82] Length = 296 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S E L++ + DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|325497365|gb|EGC95224.1| diguanylate cyclase YddV [Escherichia fergusonii ECD227] Length = 313 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%) Query: 88 SILKELF--ISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDY 138 ++L+ELF +S + + +D L+ LLN + F + N LS + D+D Sbjct: 134 TLLRELFEEVSKHEVG----MDVLTKLLNRRFLPTIFKREIAHANRVSTPLSTLIIDVDK 189 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+IND +GH GD+++ +S + +V R GG+EF +SE + +A Sbjct: 190 FKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFVIVLTEASENDTLRIAER 249 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +R +E +++ ++G I +++S G A +I AD+ALY+AK+ GRNRV + Sbjct: 250 IRSRVEKTKLKAANGDDIPLSLSIGAAMFNGHPDYERLIQMADEALYIAKRRGRNRVELW 309 Query: 259 S 259 Sbjct: 310 K 310 >gi|229072881|ref|ZP_04206079.1| GGDEF domain protein [Bacillus cereus F65185] gi|229082626|ref|ZP_04215089.1| GGDEF domain protein [Bacillus cereus Rock4-2] gi|228701058|gb|EEL53581.1| GGDEF domain protein [Bacillus cereus Rock4-2] gi|228710224|gb|EEL62200.1| GGDEF domain protein [Bacillus cereus F65185] Length = 352 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 18/208 (8%) Query: 65 LVENLSLVIISITISLLLGYIS----GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF 118 L++ + +V + + S++ GYI+ +L+ ELF ++ Q + ID L+GL N F Sbjct: 150 LIKEIHIVGLYLISSIITGYITFISANYVLQSNELF---QKMKQYATIDALTGLGNVRQF 206 Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 IS+ N+ ++ DID+FK +ND +GHP GD+V+ + L P Sbjct: 207 DLEMNRHISNKNMKNDSFCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQFPDL 266 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 R GGEEFA + +R +E+ + I IT+S G++E ++ Sbjct: 267 AFRKGGEEFALLIPNKGLAYGILTGEQIRTAVESHSFQLLDETKIKITVSVGVSE--YEG 324 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259 I AD ALY +K++GRN+V S Sbjct: 325 SPEQFIQAADDALYYSKRNGRNKVSSVS 352 >gi|330986672|gb|EGH84775.1| GGDEF domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 308 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + + LS++ DID+FK++ND +GH GD V+ ++ L V R GGEEF Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + A ++ LR+ + N + P++ +T+S G + E +++ RAD AL Sbjct: 235 SNTGASSAELIGERLRQAVRNLEFR-ELDPALTMTVSLGCSTLLPAETADSLLRRADNAL 293 Query: 245 YVAKKSGRNRVVCFS 259 YVAK+ GRNR+ S Sbjct: 294 YVAKREGRNRLAMAS 308 >gi|262192132|ref|ZP_06050293.1| GGDEF family protein [Vibrio cholerae CT 5369-93] gi|262031981|gb|EEY50558.1| GGDEF family protein [Vibrio cholerae CT 5369-93] Length = 473 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 21/170 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+G N F IS + LS+ D+D+FKQ+NDN+GHP Sbjct: 312 KRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESNPLSLAVIDLDHFKQVNDNYGHPA 371 Query: 151 GD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD +V+A + V GT + R GGEEF ++QEA +R I Sbjct: 372 GDLVLQRVVALCQRHIAQV-GT---LCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMH 427 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S P +T+S G+ + E + + RADQA+Y AK GRN+VV Sbjct: 428 ----ASQP--QVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 471 >gi|239994289|ref|ZP_04714813.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126] Length = 532 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 88/168 (52%), Gaps = 13/168 (7%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+ + N AF I+ Y+ L++V D+D FK NDN+GHP GD+ Sbjct: 360 RLSLSDPLTNIPNRRAFEMEMEKVIAMSKRYDWPLTVVILDVDSFKLYNDNYGHPKGDEC 419 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-S 212 + ++ L V+ F R GGEEF A + E+ A + A ++R IE+ I S S Sbjct: 420 LKAVAIGLNEVITRNTDFCARYGGEEFVAILPNTDEKGAKVKAEEIRDAIESLGIEHSKS 479 Query: 213 GPSIHITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S IT S G+A H +++I+ AD+ALY AK GRNR V Sbjct: 480 TVSPVITASLGVATVNFVNHHNWTLTSILNTADKALYDAKTGGRNRCV 527 >gi|153834214|ref|ZP_01986881.1| sensory box/ggdef family protein [Vibrio harveyi HY01] gi|148869402|gb|EDL68408.1| sensory box/ggdef family protein [Vibrio harveyi HY01] Length = 626 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGHP 149 ++ LS D L+ L N F L + L + FDID+FK+IND GH Sbjct: 460 KLRNLSERDGLTNLWNRRKFEEQLAQHANMLERYPNTPTTCLALFDIDHFKRINDEMGHD 519 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+VI +++ L+ FV R+GGEEFA ++ QEA ++ N LR +E Sbjct: 520 EGDRVICSVAETLLSGVRNTDFVARVGGEEFAVLMPHTTIQEAEVVLNRLRVAVE----- 574 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VC--FSDI 261 +S S +T+S G ++ S Y+ AD ALY +K +GRNRV +C F DI Sbjct: 575 LSGDGS--VTVSVGYSDLTADRTRS---YKCADIALYESKSAGRNRVSICHSFDDI 625 >gi|206891052|ref|YP_002249724.1| ggdef domain protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742990|gb|ACI22047.1| ggdef domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 133 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 2/125 (1%) Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 FDIDYFK+IND +GH GDK++ + + + +GR GGEEF G E E+ Sbjct: 2 FDIDYFKKINDTYGHLSGDKILMEIVSLAIEFLPNRLTIGRYGGEEFCIIMPGIEENESF 61 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSG 251 + RK + ++ + SG +I+++IS G+ + I +I + D ALY AK++G Sbjct: 62 KICEAFRKKVAETEFHTFSGETINLSISIGLTTFYGNKLITIDELIQKVDTALYKAKQTG 121 Query: 252 RNRVV 256 RNRV+ Sbjct: 122 RNRVI 126 >gi|51473435|ref|YP_067192.1| response regulator PleD [Rickettsia typhi str. Wilmington] gi|51459747|gb|AAU03710.1| response regulator protein [Rickettsia typhi str. Wilmington] Length = 450 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N F I N KL ++ DID FK +ND +GH GDKV+ Sbjct: 287 LAAKDGLTGLFNRRYFDIHLKQMIEKANKENIKLYLLMCDIDNFKHVNDTYGHQAGDKVL 346 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214 +S L + R GGEEF +A A +R IE I Sbjct: 347 TIVSRILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERIRVKIEYMDFYIEGQIE 406 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + TIS G+ E +E I +II RAD+A+Y AK +G+N+VV Sbjct: 407 PLKKTISIGVTEYKKEESIESIIKRADKAMYKAKTTGKNKVV 448 >gi|313499782|gb|ADR61148.1| Diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida BIRD-1] Length = 774 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 14/206 (6%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P G+ ++ E + + +L GY++ + +L + LS D L+G+ N Sbjct: 571 PRAGMRWVRGEA-TPEVGEQGCTLWHGYLTD--ISDLKGVEEELRALSVTDSLTGIHNRR 627 Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F L E+ L+++ DID+FK+IND FGH VGD+V+ L ++ Sbjct: 628 YFQERLKIELERAQRDGLPLAVIMLDIDHFKRINDRFGHAVGDRVLRSLCQRIAQRLRRT 687 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 RLGGEEF GS +A +LA +L + + N + +T S G+A Sbjct: 688 DVFCRLGGEEFMVLCPGSDADQARLLALELWQGVRNVPVEGVG----QVTASFGVAGWRS 743 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 E ++ RAD +Y AK++GR+RV Sbjct: 744 GEGADALLLRADAGVYAAKQAGRDRV 769 >gi|152973289|ref|YP_001338435.1| putative transmembrane protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958138|gb|ABR80168.1| putative transmembrane protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 269 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 22/264 (8%) Query: 11 IWLCH--EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68 +W H K + PH + ++ +FI T+ F NI F + P + I+ E Sbjct: 2 LWAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLACLIMAEG 61 Query: 69 ---------LSLVIISITISLLLGYISGS----ILKELFISYNRISQLSRIDCLSGLLNH 115 L I IT+ ++ S + ++ +L N ++ LS +D L+GL N Sbjct: 62 EQWLRMTYCFMLPIAGITLQNIIQKRSDAFTQGLMDKLMHERNTLNDLSMLDPLTGLYNR 121 Query: 116 SAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 + L + + ++ DID+FK ND++GH +GD+ + +S + + Sbjct: 122 RGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMIGDQALIRVSAAIRNAVRSRDI 181 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITISAGIAERCH 229 V R GGEEF SSE+ A A +R+ + + +I + + ++TIS G+ + Sbjct: 182 VARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHMFNESVATNVTISIGLTPLIN 241 Query: 230 KEPISTIIYRADQALYVAKKSGRN 253 + I + RAD ALY AK GRN Sbjct: 242 -DNIEQALARADGALYEAKNKGRN 264 >gi|74312107|ref|YP_310526.1| hypothetical protein SSON_1593 [Shigella sonnei Ss046] gi|73855584|gb|AAZ88291.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|323164346|gb|EFZ50151.1| hypothetical protein SS53G_5341 [Shigella sonnei 53G] Length = 296 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNH----SAFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL +F L + + L ++ DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTDPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|126651943|ref|ZP_01724135.1| hypothetical protein BB14905_03420 [Bacillus sp. B14905] gi|126591212|gb|EAZ85321.1| hypothetical protein BB14905_03420 [Bacillus sp. B14905] Length = 435 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 111/238 (46%), Gaps = 21/238 (8%) Query: 46 ANIFLFYIGLT-PFYGLEYILVENLSLVIISIT----ISLLLGYISGSILKELFISYNRI 100 A ++L G + PF G + + L + + T IS L G+ L +F + Sbjct: 193 AKVWLEVTGQSIPFTGESVVKAQEFELDLTNRTYQVRISALQHVNHGNGLLLIFTDMTEV 252 Query: 101 SQLSRI-------DCLSGLLNHSAFISSLG-SYNE------KLSIVFFDIDYFKQINDNF 146 L R+ D L+ + N AF +Y E ++V DID+FK +ND + Sbjct: 253 KNLQRMLEKQAYYDELTQIYNRRAFFQQCNQAYVEAKGTSSSFTVVLMDIDHFKHVNDTY 312 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH VGD+V+ + R GGEEF A G + E LAN L + IE Sbjct: 313 GHAVGDQVLVHVVKACQDELKRGELFARYGGEEFVLALRGCTLVEGEALANKLCQSIELQ 372 Query: 207 QINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + + G TIS G+AE + +E + ++ +AD+ALY AK++GRNRV + D E Sbjct: 373 PLKTTEGIIT-TTISCGVAEGTNGEETLYQLLNKADKALYSAKQAGRNRVHVYRDNEK 429 >gi|296128104|ref|YP_003635354.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM 20109] gi|296019919|gb|ADG73155.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM 20109] Length = 580 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 20/165 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R + + +D L+GL + A+ ++L G + LS+ DID+FK +ND GH G Sbjct: 164 RYASTAGVDALTGLADRRAWDAALEQAIDRRGRRGQPLSLALVDIDHFKLVNDERGHAAG 223 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ +D + M +GR GG+EFA G + EA LA+ L Sbjct: 224 DDLLRATADAWRTLDVPGMVLGRRGGDEFAVLLPGRTGAEAHALADRLCAAAPAP----- 278 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+AE E ++ ++ R D ALY AK +GR R V Sbjct: 279 --------ASCGVAEHVEGETVTEVLRRTDTALYAAKAAGRGRTV 315 >gi|73537827|ref|YP_298194.1| GGDEF [Ralstonia eutropha JMP134] gi|72121164|gb|AAZ63350.1| GGDEF [Ralstonia eutropha JMP134] Length = 297 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 82/170 (48%), Gaps = 6/170 (3%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIND 144 L+E ++ +R D L+GLLN A + S++ D+D FKQIND Sbjct: 114 LRERASLTEQLEHQARTDSLTGLLNRRALERIAAQPADPAGPSTTSLILMDVDRFKQIND 173 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GHP GD+V+ ++D + + + R GGEEFA G+S EAA LA L I Sbjct: 174 RHGHPAGDQVLRAVADLMRDMVDPDHALARFGGEEFAVLVPGASADEAASLAQALCAAIC 233 Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253 I ++ G + +T S G+A P + AD A+Y AK GRN Sbjct: 234 AEPIRLADGTRLPVTASFGVATGLSGAPHWPRLFAAADAAMYRAKAEGRN 283 >gi|77360935|ref|YP_340510.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis TAC125] gi|76875846|emb|CAI87067.1| conserved protein of unknown function ; putative GGDEF domain protein [Pseudoalteromonas haloplanktis TAC125] Length = 298 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 96/192 (50%), Gaps = 19/192 (9%) Query: 74 ISITISLLLGYISGSILKEL--FISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124 +S+ I L Y ++L L I YNR+ +L+ D L+GL N S F +L Sbjct: 109 LSVAIEKKLQYFHSALLYPLRNAIMYNRVLKLATKDALTGLSNRSQFNDTLLQKLENCRR 168 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV---VFGTPMFVGRLGGEEFA 181 Y S++ D+D FKQ+NDNFGH VGD V+ + LV+ + GT V R GG+EFA Sbjct: 169 YQRPFSLMLLDLDSFKQVNDNFGHKVGDDVLKEFA--LVLNSSIRGTDS-VFRFGGDEFA 225 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 ++A + + ++NS+I +T S G ++ + + RAD Sbjct: 226 ILIEDPEFTTNKVIAERIMQRVKNSKI----MAQYSVTTSIGFTLASSQDTENDVFSRAD 281 Query: 242 QALYVAKKSGRN 253 + LY AK +GRN Sbjct: 282 KGLYKAKAAGRN 293 >gi|317132906|ref|YP_004092220.1| diguanylate cyclase [Ethanoligenens harbinense YUAN-3] gi|315470885|gb|ADU27489.1| diguanylate cyclase [Ethanoligenens harbinense YUAN-3] Length = 526 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 100 ISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 + + + D L+G+ N F L S+++FD+DYFK+IND GH GD+V+ Sbjct: 354 LQEQAERDGLTGIYNRQTFTRLAEQQLRQGAGPWSVLYFDMDYFKRINDTCGHIFGDQVL 413 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + V G R GGEEF G + +EA +LA +RK +E + + G Sbjct: 414 CETCTCVAAVIGEKTLFCRAGGEEFMVFLRGYTAKEARLLAEAMRKEVEG-HMFVHEGVI 472 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +TIS G+ + ADQ LY AK GRN V +S+ Sbjct: 473 VPVTISVGVVT-AYTLTFDDYYRYADQMLYQAKSEGRNCVRVWSE 516 >gi|300717917|ref|YP_003742720.1| diguanylate cyclase [Erwinia billingiae Eb661] gi|299063753|emb|CAX60873.1| Putative diguanylate cyclase [Erwinia billingiae Eb661] Length = 535 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 10/158 (6%) Query: 105 RIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 + D ++ LLN + L + + +++ DID+FK++ND +GH VGD VI ++DQ Sbjct: 367 QTDPMTELLNRRGLNAVLEYFLATRQPFAVLAVDIDHFKRVNDTWGHDVGDNVIKSVADQ 426 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITI 220 L V R GGEEF G+ A +A +R+ IE ++ P++ HI+I Sbjct: 427 LGNSSRQTDVVCRNGGEEFLMIMPGADRDVAMAIAERVRRKIEQLEL-----PTVGHISI 481 Query: 221 SAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257 S G+A E + + +AD ALY AK +GRNRV+ Sbjct: 482 SIGVAFWSPDEISMERVFKQADDALYQAKNAGRNRVIA 519 >gi|167571938|ref|ZP_02364812.1| hypothetical protein BoklC_19009 [Burkholderia oklahomensis C6786] Length = 444 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N+ +++V D+D+FK N Sbjct: 256 RRLFDAHASLVRTAAHDALTMVYNRSYFNEQFEKAFRHAHRHNQPIALVMVDVDHFKHYN 315 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD + ++ L V P FV R GGEEFA G+ E+ AA +A +R+ Sbjct: 316 DAFGHLQGDTCLVAVAAALSGVANRPHDFVARYGGEEFAVVLPGTDERGAATIAEQVRQS 375 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I P ++T+SAG A E ++ +D ALY AK GRN Sbjct: 376 VERLRIAADMPPG-YVTVSAGYATSSGNPFETPEALVAASDAALYRAKMLGRN 427 >gi|170020136|ref|YP_001725090.1| hypothetical protein EcolC_2123 [Escherichia coli ATCC 8739] gi|188493480|ref|ZP_03000750.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638] gi|191165050|ref|ZP_03026894.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A] gi|193067088|ref|ZP_03048057.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E110019] gi|194431940|ref|ZP_03064230.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae 1012] gi|209918822|ref|YP_002292906.1| hypothetical protein ECSE_1631 [Escherichia coli SE11] gi|218554074|ref|YP_002386987.1| hypothetical protein ECIAI1_1554 [Escherichia coli IAI1] gi|218695078|ref|YP_002402745.1| hypothetical protein EC55989_1676 [Escherichia coli 55989] gi|300819483|ref|ZP_07099679.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] gi|300823528|ref|ZP_07103657.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7] gi|300903792|ref|ZP_07121700.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|300917783|ref|ZP_07134428.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1] gi|300927404|ref|ZP_07143124.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] gi|301326495|ref|ZP_07219842.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] gi|309796732|ref|ZP_07691136.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] gi|312971336|ref|ZP_07785513.1| uncharacterized protein ydeH [Escherichia coli 1827-70] gi|169755064|gb|ACA77763.1| diguanylate cyclase [Escherichia coli ATCC 8739] gi|188488679|gb|EDU63782.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638] gi|190904822|gb|EDV64527.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B7A] gi|192959678|gb|EDV90112.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E110019] gi|194419848|gb|EDX35927.1| diguanylate cyclase (GGDEF) domain protein [Shigella dysenteriae 1012] gi|209912081|dbj|BAG77155.1| conserved hypothetical protein [Escherichia coli SE11] gi|218351810|emb|CAU97529.1| conserved hypothetical protein [Escherichia coli 55989] gi|218360842|emb|CAQ98411.1| conserved hypothetical protein [Escherichia coli IAI1] gi|300404214|gb|EFJ87752.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|300415015|gb|EFJ98325.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1] gi|300416634|gb|EFJ99944.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] gi|300523998|gb|EFK45067.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7] gi|300527982|gb|EFK49044.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] gi|300846830|gb|EFK74590.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] gi|308119614|gb|EFO56876.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] gi|310336356|gb|EFQ01550.1| uncharacterized protein ydeH [Escherichia coli 1827-70] gi|315253965|gb|EFU33933.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1] gi|320179774|gb|EFW54722.1| hypothetical protein SGB_03097 [Shigella boydii ATCC 9905] gi|323185949|gb|EFZ71306.1| hypothetical protein ECOK1357_0679 [Escherichia coli 1357] gi|332098382|gb|EGJ03355.1| hypothetical protein SD15574_0261 [Shigella dysenteriae 155-74] Length = 296 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S E L++ + DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|89896374|ref|YP_519861.1| hypothetical protein DSY3628 [Desulfitobacterium hafniense Y51] gi|89335822|dbj|BAE85417.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 394 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 11/156 (7%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ +LN FI + E+++ + DID FK+IND +GH VGD V+ + Sbjct: 233 DGLTNILNRKTFIERSNAVISLYLREQEQIAFLLIDIDDFKKINDKYGHFVGDAVLQDFA 292 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D L GR GGEEFA G+ E++ +A LR I NS ++ +G I+ T Sbjct: 293 DTLRKQLRDYDLFGRYGGEEFAILLPGTDEKQVKEVAERLRGTIANSSVD--TGLKINYT 350 Query: 220 ISAGIAE-RCHKEPISTIIYR-ADQALYVAKKSGRN 253 IS G +E ++Y+ DQALY+AK G+N Sbjct: 351 ISVGYCSITPDQETTIDMLYKLCDQALYMAKAHGKN 386 >gi|331677429|ref|ZP_08378104.1| putative GGDEF domain protein [Escherichia coli H591] gi|331073889|gb|EGI45209.1| putative GGDEF domain protein [Escherichia coli H591] Length = 298 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S E L++ + DID FK +ND +GH +GD V+ L Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 191 ATYLASRTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 249 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293 >gi|260773583|ref|ZP_05882499.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14] gi|260612722|gb|EEX37925.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14] Length = 613 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 20/171 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGH 148 N++ +LS D L+ L N F L E++ +V DID+FK++ND GH Sbjct: 448 NKLRELSEKDSLTQLWNRRKFELELTHQVERIQAEGNAYPVCLVLLDIDFFKRVNDEQGH 507 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+VI ++ L F+ R+GGEEFA + ++A ++IIE + Sbjct: 508 DQGDRVIIDVARLLTQHLRRYDFIARIGGEEFAVIMPSTRIEQA-------QQIIERLRG 560 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258 + + P + +T+SAGI + +T Y+ AD ALY +KKSGRN+V F Sbjct: 561 AVEAEPHLSVTVSAGITDLTLD---ATRSYKCADIALYESKKSGRNQVSTF 608 >gi|134095065|ref|YP_001100140.1| hypothetical protein HEAR1864 [Herminiimonas arsenicoxydans] gi|133738968|emb|CAL62016.1| Conserved hypothetical protein, putative GGDEF domain [Herminiimonas arsenicoxydans] Length = 524 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 8/172 (4%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNEK---LSIVFFDIDYFKQINDN 145 L ++S+L R D L+G LN F L + L I D+D FK+IND Sbjct: 351 LETKLEQMSELVREDQLTGSLNRRGLEDIFERELARAERRGTPLCIAMLDLDDFKKINDK 410 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD+ + L + + + R GGEEF + EA L++ + Sbjct: 411 YGHSAGDEALIHLVRVIKETLRSMDVIARFGGEEFLIVLPDTGMDEAVQTVTRLQREL-T 469 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 QI + + + +T SAG+A R +E +I RAD+ALY AK++G+NRVV Sbjct: 470 KQIFMHNHTRLLMTFSAGVALRNEREDQRAMIERADKALYEAKRTGKNRVVA 521 >gi|330969422|gb|EGH69488.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 551 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREDKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + Q A + +D+R ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHRVLDDIRHRF--AEIHYPAQPADLFC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRNRV Sbjct: 497 TFSAGVVSLGAHDDSLSLASQADTALYCAKHAGRNRV 533 >gi|317483714|ref|ZP_07942661.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316925030|gb|EFV46169.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 308 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 19/187 (10%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYF 139 G+ L+E + LS D L+GL N F++ + +S + DID+F Sbjct: 113 GNTLQENRRLIEKYRNLSLTDMLTGLPNRRGFLALAEKSFARASRKRQSISFIMADIDHF 172 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K++ND GH GD+V+ ++ + + R GGEEF + AA++A L Sbjct: 173 KKVNDRHGHEAGDEVLRVVAQRFLDCLRVEDICCRYGGEEFLVMLYDTDVIRAALVAERL 232 Query: 200 RKIIENSQINISSGPSIHITISAGIAE----------RCHKEPISTIIYRADQALYVAKK 249 RK I I+ + G I + IS G+ E +CH E I + +D LY AKK Sbjct: 233 RKSIAGKPIS-TRGEEIRVAISLGVTEVVAADYAGTRKCHAE-IRRAVQVSDAFLYKAKK 290 Query: 250 SGRNRVV 256 +GRNRV Sbjct: 291 AGRNRVA 297 >gi|257485856|ref|ZP_05639897.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488009|ref|ZP_07006046.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157288|gb|EFH98371.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|331012942|gb|EGH92998.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 308 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + + LS++ DID+FK++ND +GH GD V+ ++ L V R GGEEF Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + A ++ LR+ + N + P++ +T+S G + E +++ RAD AL Sbjct: 235 SNTGASSAELIGERLRQAVRNLEFR-ELDPALTMTVSLGCSTLLPAETADSLLRRADNAL 293 Query: 245 YVAKKSGRNRVVCFS 259 YVAK+ GRNR+ S Sbjct: 294 YVAKREGRNRLAMAS 308 >gi|241663896|ref|YP_002982256.1| diguanylate cyclase [Ralstonia pickettii 12D] gi|240865923|gb|ACS63584.1| diguanylate cyclase [Ralstonia pickettii 12D] Length = 555 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L F++ + E L +V D+D+FK+IND +GH VGD + + Sbjct: 399 DHLTGVLTRRRFLALFDTVLARAHNRAEPLVLVLADLDHFKRINDTWGHAVGDMALQRFA 458 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V + VGRLGGEEFA ++ + A +A LR + + + +G + +T Sbjct: 459 SLATGVLRSSDLVGRLGGEEFAMVMGRTTLETATEVAERLRTAVAETDESFPTG--LSMT 516 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+ + S ++ RAD ALY AK+SGRNR V Sbjct: 517 VSMGMTVCRPGDTASEMLKRADLALYRAKESGRNRHVA 554 >gi|170699368|ref|ZP_02890415.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria IOP40-10] gi|170135740|gb|EDT04021.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria IOP40-10] Length = 322 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 9/179 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +E + ++ + + D L+G+ N F + LG Y LS++ FD+D+FK Sbjct: 145 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFARWQRYGGDLSMLLFDLDHFKT 204 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH GD V+ + ++ + GR GGEEFA ++ EA +A+ LR Sbjct: 205 INDRFGHAAGDAVLRETARRVASIVRAQDTFGRFGGEEFALLLPCTNLDEAMRVADKLRD 264 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRVVCFS 259 I ++ ++ + G S+ +T S G A S + + AD ALY AK+ GR+R + ++ Sbjct: 265 AIGSTPVD-AEGVSVPVTASVGGACATVGATASDVLVNEADTALYRAKRLGRDRSIAYT 322 >gi|262392421|ref|YP_003284275.1| sensory box/GGDEF family protein [Vibrio sp. Ex25] gi|262336015|gb|ACY49810.1| sensory box/GGDEF family protein [Vibrio sp. Ex25] Length = 626 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 89/176 (50%), Gaps = 23/176 (13%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149 ++ LS D L+GL N F L Y + + FDID+FK+IND GH Sbjct: 460 KLRNLSEKDGLTGLWNRRKFEEQLAQYAGIIERYPDSPPACLALFDIDHFKRINDELGHD 519 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKVI +++ L+ + FV R+GGEEFA ++ +EA ++ N LR + Sbjct: 520 EGDKVICSVAETLLKEVRSTDFVSRVGGEEFAVIMPHTTLEEAEVVLNRLR-------VA 572 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VC--FSDI 261 + IT+SAG ++ T Y+ AD ALY +K +GRN V +C F DI Sbjct: 573 VQLRSDRAITVSAGYSDLTSDR---TRTYKCADIALYESKSAGRNCVSLCHSFDDI 625 >gi|255524596|ref|ZP_05391550.1| diguanylate cyclase [Clostridium carboxidivorans P7] gi|296185753|ref|ZP_06854160.1| diguanylate cyclase (GGDEF) domain protein [Clostridium carboxidivorans P7] gi|255511749|gb|EET88035.1| diguanylate cyclase [Clostridium carboxidivorans P7] gi|296049581|gb|EFG89008.1| diguanylate cyclase (GGDEF) domain protein [Clostridium carboxidivorans P7] Length = 393 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 10/170 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ LS D L+GLLN F + L + +++ DIDYFK +ND GHP+G Sbjct: 222 KLDYLSNHDILTGLLNRRCFSAQASEKMKILTETKKAAALILVDIDYFKDVNDKLGHPIG 281 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ S + + R GGEEF +S EA ++A +R I+++ I ++ Sbjct: 282 DIVLKETSRIFMEHIKPNDLITRWGGEEFLVFLFDTSIDEAYVIAEKIRVAIQDNVI-VT 340 Query: 212 SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I IT S GI+ + E AD ALY AK+ GRN+VV S Sbjct: 341 DKIQIKITASFGISLLKDNFSESFDASYKSADVALYQAKEQGRNKVVIAS 390 >gi|163793886|ref|ZP_02187860.1| Hypothetical protein ydeH [alpha proteobacterium BAL199] gi|159180997|gb|EDP65514.1| Hypothetical protein ydeH [alpha proteobacterium BAL199] Length = 305 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 7/165 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDK 153 + +S +D L+G + L ++ + DID FK IND GH VGD Sbjct: 132 AAISDLDPLTGAQTRQVMLRDLKREVQRARRSGTPGCLAIADIDRFKSINDGHGHAVGDS 191 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+A +S L+ V R GGEEF + +EA + + +R+ I + I G Sbjct: 192 VLAAVSGLLIESLRPYDSVYRYGGEEFLLCLPETGPEEARRVLDRVRERIAGHPVMIDGG 251 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ +TIS G+ + P+ +I RAD+ALY+AK+SGRNRV + Sbjct: 252 KNLVVTISFGLTLMTPRRPLEELIDRADRALYLAKESGRNRVEVW 296 >gi|330889354|gb|EGH22015.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 220 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + + LS++ DID+FK++ND +GH GD V+ ++ L V R GGEEF Sbjct: 87 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 146 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + A ++ LR+ + N + P++ +T+S G + E +++ RAD AL Sbjct: 147 SNTGASSAELIGERLRQAVRNLEFR-ELDPALTMTVSLGCSTLLPAETADSLLRRADNAL 205 Query: 245 YVAKKSGRNRVVCFS 259 YVAK+ GRNR+ S Sbjct: 206 YVAKREGRNRLAMAS 220 >gi|262396686|ref|YP_003288539.1| GGDEF domain protein [Vibrio sp. Ex25] gi|262340280|gb|ACY54074.1| GGDEF domain protein [Vibrio sp. Ex25] Length = 327 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 9/179 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDN 145 L I ++ L+ D L+G+ N F+ S L Y + + D+D FK +ND Sbjct: 150 LHIQIMKMEHLATTDDLTGIPNRREFMRQIESRLTEYRTQGIDFHVAILDLDNFKSLNDR 209 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH GDK + + + + R+GGEEFA S QEA +R +E Sbjct: 210 FGHDAGDKSLIHAVNTIQSHLLDCDLLARVGGEEFAIVLRSRSSQEALNTLETIRNALET 269 Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + I SG + T S G+ + C + ++ RAD ALY AK++GRNRV EN Sbjct: 270 TTIQ-HSGRDMSFTASIGVTQVCSLDDSFEPLVKRADLALYKAKETGRNRVEVHKTEEN 327 >gi|224373299|ref|YP_002607671.1| ggdef domain protein [Nautilia profundicola AmH] gi|223588497|gb|ACM92233.1| ggdef domain protein [Nautilia profundicola AmH] Length = 549 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 87/165 (52%), Gaps = 14/165 (8%) Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N I++ NEKL+ + D+DYFK +ND +GH GD V+ L+ Sbjct: 379 DPLTNLFNRRHLENILPMLIAAAQRRNEKLAFLMIDMDYFKTVNDTYGHKAGDTVLKTLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHI 218 + L+ V R GGEEF E AI +A +R IEN++I + + I Sbjct: 439 NILINNVRKSDIVIRYGGEEFLIILQNIKSYEDAINIAEKIRTSIENTKIQLDN-TVIQK 497 Query: 219 TISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 TIS GI+ E C K+ I Y AD ALY AK++GRN+VV F + Sbjct: 498 TISIGISLFPEHC-KQGWECIKY-ADIALYKAKENGRNQVVLFHE 540 >gi|66047604|ref|YP_237445.1| GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63258311|gb|AAY39407.1| GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 551 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREDKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + Q A + +D+R ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHRVLDDIRHRF--AEIHYPAQPADLFC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRNRV Sbjct: 497 TFSAGVVSLGAHDDSLSLASQADTALYCAKHAGRNRV 533 >gi|283778699|ref|YP_003369454.1| diguanylate cyclase [Pirellula staleyi DSM 6068] gi|283437152|gb|ADB15594.1| diguanylate cyclase [Pirellula staleyi DSM 6068] Length = 500 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 8/157 (5%) Query: 104 SRIDCLSGLLNHSAFISSLG------SYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+ + N AF L +N+ +S ++ D+D+FK+ ND GH GD+V+ Sbjct: 121 ARTDALTQVANRRAFDDELRRCLSERDHNKTVSTLMILDVDHFKKFNDTHGHQAGDEVLR 180 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L F + V R GGEEFA G S I A R+ + + G S+ Sbjct: 181 GVARVLRNAFSSAELVARYGGEEFAIVFPGVSFAACQISAEKARQAVATANFRF-QGKSL 239 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +T SAG++E + I RAD+ALY +KK+GRN Sbjct: 240 SVTASAGLSELLPTDNEQEWIRRADEALYASKKAGRN 276 >gi|260867979|ref|YP_003234381.1| hypothetical protein ECO111_1938 [Escherichia coli O111:H- str. 11128] gi|257764335|dbj|BAI35830.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|323176647|gb|EFZ62239.1| hypothetical protein ECOK1180_5349 [Escherichia coli 1180] Length = 296 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S E L++ + DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|254502053|ref|ZP_05114204.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222438124|gb|EEE44803.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 398 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 8/169 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 +L ++ ++ + D L+G+LN A + L S L ++ D+D+FK IND Sbjct: 223 QLMEAHQKLKDQAMHDALTGVLNRGAIFNLLESELCKAARTQAPLVVIMADLDHFKSIND 282 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH GD+V+ ++ + VGR GGEEF G+ A +A +R + Sbjct: 283 RFGHLAGDEVLRTVAATIKDTLRGYDHVGRYGGEEFLILLSGTDTNMAVDVAERIRGTVA 342 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 N +I GP I TIS G+A +I RAD ALY AK+ GRN Sbjct: 343 NLEIMHKDGP-IRPTISQGLALSDPSGTAEQVIARADAALYKAKEDGRN 390 >gi|190891316|ref|YP_001977858.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190696595|gb|ACE90680.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|327194838|gb|EGE61672.1| two-component response regulator protein [Rhizobium etli CNPAF512] Length = 457 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 11/178 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 L S + +L+ D L+GL N + L + LS++ DID FKQ+ND Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKQVND 339 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ ++++ R GGEEF A +S + AA +A LR +E Sbjct: 340 TYGHDGGDEVLREFANRVRSTIRGADLACRYGGEEFVVAMPDTSPEVAAAVAERLRAAVE 399 Query: 205 NSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ + +G ++++T S GIA R P ++ +AD ALY AK +GRNRVV + Sbjct: 400 SAPFMLKHAGQALNVTASFGIASRMGSVLTP-DQLMKQADLALYEAKNTGRNRVVAAA 456 >gi|171317239|ref|ZP_02906438.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria MEX-5] gi|171097614|gb|EDT42449.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria MEX-5] Length = 322 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 9/179 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +E + ++ + + D L+G+ N F + LG Y LS++ FD+D+FK Sbjct: 145 MQREREEAVAKLREHANCDGLTGIANRRFFEARLGDEFARWQRYGGDLSMLLFDLDHFKT 204 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH GD V+ + ++ + + GR GGEEFA ++ EA +A+ +R Sbjct: 205 INDRFGHAAGDAVLRETARRVASIVRSQDTFGRFGGEEFALLLPCTNLDEAMRVADKVRD 264 Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I ++ ++ + G S+ +T S G A ++ AD ALY AK+ GR+R + ++ Sbjct: 265 AIGSTPVD-AEGVSVPVTASVGGACATVGATAFDVLVNEADTALYRAKRLGRDRSIAYA 322 >gi|323220721|gb|EGA05165.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 185 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 10/177 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEK---LSIVFFDIDYFKQINDN 145 +F+ N + + D L+ L N A Y E S++ D+DYFK +ND Sbjct: 2 MFVLQNSLQWQAWHDPLTRLYNRGALFEKASRLAKRYREARQPFSVIQLDLDYFKSVNDR 61 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH GD+V++ + + GR+GGEEF G+++ +A +A +R+ I + Sbjct: 62 FGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLPGATKTQALQIAERIRQRIND 121 Query: 206 SQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +I ++ ++ I+ S GI AE + AD+ LY AK+SGRNR +C SD Sbjct: 122 KEILVTKSTTLRISASMGISSAEEYGDYDFEQLQSLADKRLYYAKQSGRNR-ICASD 177 >gi|296158019|ref|ZP_06840852.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1] gi|295891787|gb|EFG71572.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1] Length = 777 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 15/235 (6%) Query: 38 FIA-TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS 96 F+A + +F A + G + +E ++ + +V I + S + + + F+ Sbjct: 134 FVAGSALFYATAYALLFGEPLTHDVEIVVW--MWVVAIGVPTSAVFHFGFYRFRRNHFLL 191 Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++++QL+ D L+GL N +F+ + ++S +F DID FK +ND FGH V Sbjct: 192 ESQLAQLAATDPLTGLQNRRSFVKHAERRLDTLAPETRISAIFLDIDNFKSLNDRFGHAV 251 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + ++ L+ V R+GGEEF A L A LA LR I + Sbjct: 252 GDHALYEVAHALMEEASADDSVSRIGGEEF-ALLLCDGLTGALHLAERLRLAIAAIER-- 308 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 P +T S G+AE E I ++ RAD+AL AK SGRNRV + + Sbjct: 309 ---PDGQLTASFGVAEHRSGESIMMLLDRADEALLRAKHSGRNRVCAERPLPRDA 360 >gi|255624521|ref|XP_002540486.1| conserved hypothetical protein [Ricinus communis] gi|223495390|gb|EEF21896.1| conserved hypothetical protein [Ricinus communis] Length = 141 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/131 (41%), Positives = 75/131 (57%), Gaps = 6/131 (4%) Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK IND +GHP GD+V+ + + +GRLGGEEFA +S +EA Sbjct: 1 MLDIDFFKVINDTYGHPQGDQVLVACARTIENTIREKDLLGRLGGEEFAVVLPNTSLEEA 60 Query: 193 AILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYR-ADQALYVAK 248 ++A +R +I E S S H TIS GI+ C E I ++Y+ AD ALY AK Sbjct: 61 RVIAERIRVRIAELSFYTTQRIQSFHTTISIGIS--CATETIYAYELLYKHADLALYEAK 118 Query: 249 KSGRNRVVCFS 259 +SGRN V+ +S Sbjct: 119 QSGRNLVITYS 129 >gi|149176926|ref|ZP_01855535.1| probable response regulatory protein [Planctomyces maris DSM 8797] gi|148844181|gb|EDL58535.1| probable response regulatory protein [Planctomyces maris DSM 8797] Length = 691 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 11/172 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG---------SYNEKLSIVFFDIDYFKQINDNFG 147 YN + + +D L+ + N + L E LS++F D D+FK IND++G Sbjct: 379 YNDLKLAASLDALTSVANRGELETQLAIMLSRIQKEQNPEPLSLIFIDADHFKNINDSYG 438 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+ L+ + VGR GGEEF ++ + A A LR + N Sbjct: 439 HSTGDEVLVELARLFQHETYSGELVGRYGGEEFVILCPETALEHAVKKAERLRLAVSN-- 496 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + + +I +T S G+++ + + ++ +RAD ALY AK++GRN+V + Sbjct: 497 LKMENQSNIRVTASFGVSQYEPGDSLESLFHRADSALYQAKETGRNKVRALT 548 >gi|149190179|ref|ZP_01868454.1| GGDEF family protein [Vibrio shilonii AK1] gi|148835926|gb|EDL52888.1| GGDEF family protein [Vibrio shilonii AK1] Length = 412 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 21/176 (11%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 Q++ D L+ + A + K ++ D+D+FK+ ND +GH GD V+ ++ + Sbjct: 236 QMAFNDRLTNIPGRRALEMDMKHLGRKFTVAMLDVDHFKKFNDTYGHDTGDDVLKLVASR 295 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210 ++ V G V R GGEEF G + +++ + ++LR+ I + ++ I Sbjct: 296 MLSVGGNAR-VYRYGGEEFTILFKGKTAKDSKVYLDELREKIADYEMVIRNNAERPNDNK 354 Query: 211 ---------SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + G ++ IT+S G A+ + ++ +AD+ALY AK+ GRN+V C Sbjct: 355 KGAKQRSASNKGSTVSITVSIGAADSKSTKKPEEVLKKADKALYSAKEKGRNQVQC 410 >gi|90407481|ref|ZP_01215664.1| GGDEF domain protein [Psychromonas sp. CNPT3] gi|90311402|gb|EAS39504.1| GGDEF domain protein [Psychromonas sp. CNPT3] Length = 493 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 86/172 (50%), Gaps = 20/172 (11%) Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 S+L+ +D L+ + N A+ L Y L I D+D+FK+IND FGH GDK Sbjct: 319 SELAHLDFLTKIPNREAWSERLTFEFSRYQRYQNPLKIAIIDMDHFKRINDQFGHLAGDK 378 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 VI ++ L F+ R GGEEFA + ++A + L+K+ I+S Sbjct: 379 VINVVAQTLKKSLRNTDFIARYGGEEFAILLPEITNEQAVDV---LQKLC----AKIASI 431 Query: 214 P------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P +I ITIS G A + I + RAD ALY AK GRN+VV F+ Sbjct: 432 PFKFKKDNISITISIGCASFDKGDNIDSAFERADNALYKAKNGGRNQVVFFA 483 >gi|329898138|ref|ZP_08272339.1| Alkyl hydroperoxide reductase subunit C-like protein [gamma proteobacterium IMCC3088] gi|328920893|gb|EGG28326.1| Alkyl hydroperoxide reductase subunit C-like protein [gamma proteobacterium IMCC3088] Length = 705 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 11/191 (5%) Query: 73 IISITIS-LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 ++S+ +S L+L Y++ + ++ + +L++ D L+G+ + + F + LGS Sbjct: 336 LVSLLVSGLVLVYVNQQKARNQRLAEAK--RLAQTDHLTGVWSRAGFEEGLEALRARLGS 393 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 L I D+D+FK IND +GH GD V+ L+ + + R GGEEF Sbjct: 394 DVRHLGICLLDVDHFKHINDTWGHATGDTVLRELAKVVKRELRDYDLLARWGGEEFVIML 453 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 G S Q A +A +R+ + + + G S+ +TIS G+ K + + RAD A+ Sbjct: 454 EGVSSQVAKNVAERIRQAVASHVFSTELGQSVDVTISMGVT-LMSKGSLDQALERADNAM 512 Query: 245 YVAKKSGRNRV 255 Y+AK GRN+V Sbjct: 513 YLAKTEGRNQV 523 >gi|330815349|ref|YP_004359054.1| Diguanylate cyclase [Burkholderia gladioli BSR3] gi|327367742|gb|AEA59098.1| Diguanylate cyclase [Burkholderia gladioli BSR3] Length = 394 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 1/134 (0%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + LS++ D+D+FK IND +GH GD V+ +D + +GRLGGEEFA Sbjct: 250 GKPLSLLLVDLDHFKSINDTYGHAGGDNVLREFTDLMRSRLRGGDALGRLGGEEFAILLP 309 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 ++ +A +A LR + ++ ++G + T S G+A R E + + RADQALY Sbjct: 310 NTTLADAYRIAERLRDEVSRHEVVTATGLCSYST-SGGLASRQPGETLEQLAARADQALY 368 Query: 246 VAKKSGRNRVVCFS 259 AK +GRNRV S Sbjct: 369 DAKVAGRNRVCLHS 382 >gi|260777494|ref|ZP_05886388.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260607160|gb|EEX33434.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 385 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 15/161 (9%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N A I+ + + LS++ DID+FK++ND +GH GD+V+ Sbjct: 228 DELTQLYNRRALEELLPKEIARSSRHKQPLSVLLLDIDHFKKVNDTYGHQAGDRVLRTTG 287 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216 L++ R GGEEF + ++A I+A LR+ I+ +++ N+ S Sbjct: 288 KLLILQTRKDDLSFRYGGEEFLVLLPNTDVEKAVIVAEKLREAIKRARMLPTNVDS---- 343 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T S G+ + ++ T I RADQALY AK++GRN+V Sbjct: 344 -CTASFGVTQFNGEDDWQTAIERADQALYSAKENGRNQVTA 383 >gi|193214078|ref|YP_001995277.1| diguanylate cyclase/serine/threonine protein kinase [Chloroherpeton thalassium ATCC 35110] gi|193087555|gb|ACF12830.1| diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Chloroherpeton thalassium ATCC 35110] Length = 606 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 10/175 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141 +L+ L + +L D L+GL N F Y LSI DID+FK+ Sbjct: 432 LLERLREQAETLERLVTYDGLTGLANRRHFDEQFEYEFRRTRRYKRPLSIAMSDIDFFKK 491 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +NDNF H VGD+V+ ++ V R GGEEF ++++ A A +RK Sbjct: 492 VNDNFSHQVGDEVLKKVASIFRENVRAGDLVARYGGEEFVFIFTETNKESAIRAAEKIRK 551 Query: 202 IIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IE+ N+ +G + +TIS G+AE + +I AD LY AK++GRN+V Sbjct: 552 AIEDYDWSNVHAG--LKVTISIGVAEDAGFDGCDELIAAADSKLYEAKRNGRNQV 604 >gi|28868945|ref|NP_791564.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213968727|ref|ZP_03396869.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] gi|301381342|ref|ZP_07229760.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13] gi|302060232|ref|ZP_07251773.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40] gi|302130021|ref|ZP_07256011.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852185|gb|AAO55259.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213926660|gb|EEB60213.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] gi|331016835|gb|EGH96891.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 308 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + + LS++ DID+FK++ND +GH GD V+ ++ L V R GGEEF Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + A ++ LR+ + N + P++ +T+S G + E +++ RAD AL Sbjct: 235 SNTGATAAELIGERLRQAVRNLEFR-ELDPALTMTVSLGCSTLLPTETADSLLRRADNAL 293 Query: 245 YVAKKSGRNRVVCFS 259 YVAK+ GRNR+ S Sbjct: 294 YVAKREGRNRLAMAS 308 >gi|260774238|ref|ZP_05883153.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14] gi|260611199|gb|EEX36403.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14] Length = 338 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 87/167 (52%), Gaps = 11/167 (6%) Query: 101 SQLSRI------DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVG 151 SQL+ + D L GL N AF + L + + LSI+ DID+FK ND+FGH G Sbjct: 170 SQLAEVQKDALFDPLCGLYNRRAFNNDLLAMLHAQQALSIILLDIDHFKSYNDDFGHLFG 229 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 D V+ ++ ++ M R GGEEF + + A A +R+ IE + + Sbjct: 230 DSVLRAIAKRIQGNCREAMTAYRFGGEEFVILLPNMTLRSARQFAESVRRSIEKLSVRDR 289 Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SG I +IT S G+AE E T++ RAD+ LY AK GRNRV+ Sbjct: 290 RSGQQIGNITASFGVAEYQSLEAADTLVDRADKMLYQAKNLGRNRVM 336 >gi|224373793|ref|YP_002608165.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH] gi|223589128|gb|ACM92864.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH] Length = 686 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 101/199 (50%), Gaps = 21/199 (10%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSR--------IDCLSGLLNHSAFISSLGSY 125 IS+ I++ + Y+ I+ +LF Y++ Q + D L+GL N F+ L Sbjct: 217 ISMIITMFIMYLLSIIVNKLFRVYDKTIQSEKHKLFIRANFDALTGLCNRECFMQKLKDA 276 Query: 126 -------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 N+K +++F DIDYFKQIND GH VGDKV+ L+++L V R GG+ Sbjct: 277 YYDSIRNNKKFAVLFIDIDYFKQINDTDGHKVGDKVLKILAERLKKSVRKTDVVSRFGGD 336 Query: 179 EFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIA-ERCHKEPIST 235 EF E I+ ++I+E +I I+S ++T S GI+ + E + Sbjct: 337 EFLVLLKDIHSIEDVIIYT--QRILEEIKKEIEINS-KKYYVTGSIGISIYPDNGEDLDK 393 Query: 236 IIYRADQALYVAKKSGRNR 254 +I AD A+Y +K G++R Sbjct: 394 LIIYADIAMYQSKNDGKDR 412 >gi|254458008|ref|ZP_05071435.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207085401|gb|EDZ62686.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 628 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 87/166 (52%), Gaps = 11/166 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +LSR D L+ + N L S NE SI+ DID+FK +ND++GH VG Sbjct: 463 KLQKLSRTDQLTKVSNRMHIDDVLQSQYYRFYRDNELTSIILLDIDFFKSVNDDYGHIVG 522 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D VI + L +GR GGEEF ++ +A LAN L+KII Q N S Sbjct: 523 DSVIIEFAKILQSSIRKGDILGRWGGEEFLIILPHTNLDQAMQLANKLQKII--FQNNFS 580 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + H T S G++ + T+I AD+ALY++K++GRN V Sbjct: 581 TVK--HKTASFGVSTFERGMSVETLIDSADKALYLSKENGRNCVTS 624 >gi|254229043|ref|ZP_04922463.1| ggdef domain protein [Vibrio sp. Ex25] gi|151938334|gb|EDN57172.1| ggdef domain protein [Vibrio sp. Ex25] Length = 349 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 9/179 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDN 145 L I ++ L+ D L+G+ N F+ S L Y + + D+D FK +ND Sbjct: 172 LHIQIMKMEHLATTDDLTGIPNRREFMRQIESRLTEYRTQGIDFHVAILDLDNFKSLNDR 231 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH GDK + + + + R+GGEEFA S QEA +R +E Sbjct: 232 FGHDAGDKSLIHAVNTIQSHLLDCDLLARVGGEEFAIVLRSRSSQEALNTLETIRNALET 291 Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + I SG + T S G+ + C + ++ RAD ALY AK++GRNRV EN Sbjct: 292 TTIQ-HSGRDMSFTASIGVTQVCSLDDSFEPLVKRADLALYKAKETGRNRVEVHKTEEN 349 >gi|255616822|ref|XP_002539786.1| conserved hypothetical protein [Ricinus communis] gi|223502391|gb|EEF22597.1| conserved hypothetical protein [Ricinus communis] Length = 204 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 11/173 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGH 148 S I L+ D L+ + N AF+ L + L+ + DID+FKQIND +GH Sbjct: 19 SDREIRTLAMTDPLTKIFNRRAFMIQAEKELAAAERSGLPLAFLMLDIDHFKQINDKYGH 78 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ + + L +GR GGEEF A G+ Q A LA LR + ++I Sbjct: 79 AAGDEVLVRIVEVLSSHLRKQDTLGRYGGEEFCALLPGTDAQGAMALAEKLRLEVAMTRI 138 Query: 209 NISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCF 258 + S+ +T+S G + H P ++ AD+ALY AK GRNR + + Sbjct: 139 EVEEN-SLGLTLSIGGSTWEHLGPTKDYRELMEEADRALYQAKTGGRNRSLLY 190 >gi|331647059|ref|ZP_08348153.1| putative GGDEF domain protein [Escherichia coli M605] gi|331043842|gb|EGI15978.1| putative GGDEF domain protein [Escherichia coli M605] Length = 298 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKATNDEEACRAGVRICQLVDNHAITHSEG-HINI 249 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293 >gi|304409422|ref|ZP_07391042.1| diguanylate cyclase [Shewanella baltica OS183] gi|307303780|ref|ZP_07583533.1| diguanylate cyclase [Shewanella baltica BA175] gi|304351940|gb|EFM16338.1| diguanylate cyclase [Shewanella baltica OS183] gi|306912678|gb|EFN43101.1| diguanylate cyclase [Shewanella baltica BA175] Length = 581 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 17/184 (9%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDY 138 G + K F+ +++R+D L+G+LN A F+ + + ++ FD+D+ Sbjct: 387 GQMQKRKFM------RMARMDALTGILNRGAGQELGENLFVQATARGGD-FCVILFDLDF 439 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+IND+FGH GD + + D L R+GGEEFA + E++ +A Sbjct: 440 FKRINDSFGHGSGDWALKKVVDSLKSHIRNGDVFARIGGEEFAILLPYADEEKGMEVAEQ 499 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257 R IE SG IT S G++ + + + +RAD ALY AK +GRN VV Sbjct: 500 CRARIEAIDTQ-HSGHKFVITASFGVSGLMADDLSLDPLFHRADMALYAAKANGRNAVVR 558 Query: 258 FSDI 261 +SDI Sbjct: 559 YSDI 562 >gi|225850678|ref|YP_002730912.1| signal transduction response regulator [Persephonella marina EX-H1] gi|225645562|gb|ACO03748.1| signal transduction response regulator [Persephonella marina EX-H1] Length = 430 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 16/194 (8%) Query: 78 ISLLLGYISGSILKELFISY------NRISQLSRIDCLSGLLNHSAFISSLGSY------ 125 I+LL YI+ L F+S R + + +D L+G+LN L + Sbjct: 237 INLLFDYINLQKLSAQFLSLLTVKIAVRSVEDANVDPLTGVLNRRPMEFILNNQYQISKI 296 Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 N +SI DID FK+IND++GH VGD VI +S L + R GGEEF Sbjct: 297 SNRPVSIALLDIDDFKKINDSYGHLVGDCVIKQVSSILQKSLRKSDLIFRFGGEEFLIFM 356 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQ 242 + +++A + LRK IE I I +I +T+S G+ A E ++ II RAD+ Sbjct: 357 PFTEKRDAFKVMEKLRKKIEEKDI-ICGKNTIKVTVSVGVEGATLHPNETVNDIIERADK 415 Query: 243 ALYVAKKSGRNRVV 256 + AK++G+N+VV Sbjct: 416 KMLRAKRTGKNKVV 429 >gi|157145252|ref|YP_001452571.1| hypothetical protein CKO_00988 [Citrobacter koseri ATCC BAA-895] gi|157082457|gb|ABV12135.1| hypothetical protein CKO_00988 [Citrobacter koseri ATCC BAA-895] Length = 538 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 103/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120 L L+ T+ LL+ ++ ++ +F+ + + + D L+ L N A I Sbjct: 328 LGLLWALFTMMLLISWVVIRKMVSNMFVLQSSLQWQAWHDPLTRLYNRGALFERARVLIQ 387 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + S++ D+D+FK +ND FGH GD+V++ + + + GR+GGEEF Sbjct: 388 RCHEQRQPFSVIQIDLDHFKSVNDRFGHQAGDRVLSHAAGLISGTIRSHDLAGRVGGEEF 447 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G++ +AA +A +R+ + + +I I+ G ++ I+ S G+ A+ + Sbjct: 448 CIVLPGTTLVQAAQIAERIRQRVNDKEILIAKGTTLRISASLGVSGAQENGDYDFEQLQS 507 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD+ LY+AK++GRN+ VC D Sbjct: 508 LADRRLYLAKQAGRNQ-VCVRD 528 >gi|120553001|ref|YP_957352.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120322850|gb|ABM17165.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 565 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 17/182 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 +EL + ++ +S D L+ + N F L + + +LS++ DID+FKQ+N Sbjct: 377 EELEQANEQLRAISLTDGLTHVANRRRFDEKLETEWNRALRHEHELSLILLDIDHFKQVN 436 Query: 144 DNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 D FGH VGD + + LSD+ V + V R GGEEFA + A +A + Sbjct: 437 DRFGHLVGDDCLVALASILSDE---VQRSGDLVARYGGEEFAILLPTTDVAGAQQVAERM 493 Query: 200 RKIIENSQINISSGPS-IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 R + + +N S + +TIS G+A + +I RAD+ALY AK GRNRVV Sbjct: 494 RLSVARTPVNSGEHMSPVSLTISLGVATLTPNRQSDCQELIRRADEALYAAKSDGRNRVV 553 Query: 257 CF 258 + Sbjct: 554 VW 555 >gi|117924687|ref|YP_865304.1| cyclic nucleotide-binding protein [Magnetococcus sp. MC-1] gi|117608443|gb|ABK43898.1| cyclic nucleotide-binding protein [Magnetococcus sp. MC-1] Length = 320 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 ++ +++D L+G+ N F S+ + LS++ D+D+FK+ ND GH G Sbjct: 151 KLETFAKVDPLTGIYNRRWFDESMQRQMRRVEHSQNPLSLIMLDVDHFKRYNDTHGHQGG 210 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ + L+ + + R GGEEFA + ++A LR +E +I Sbjct: 211 DEALIALAHTISLHLRPGDIAARYGGEEFAVVLPDTDAVSGRMIAERLRTAVEALEIKDD 270 Query: 212 SGPSIH-ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 G S+ ITIS G+A+ + +S +I AD ALY AK GRNRVV Sbjct: 271 EGNSLSGITISLGVAQTSGTVDSVSELIATADAALYQAKNQGRNRVV 317 >gi|300923880|ref|ZP_07139896.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] gi|300419877|gb|EFK03188.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] Length = 302 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 109 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 168 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 169 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 228 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 229 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 288 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 289 KQAGRNR-VCASD 300 >gi|299530167|ref|ZP_07043593.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni S44] gi|298721824|gb|EFI62755.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni S44] Length = 306 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 7/173 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 ++L ++ +I L R D L+GL N + L + I DID+FKQ+N Sbjct: 132 EKLALALKQIENLVRNDDLTGLANRRGVMDRLQQCIHAAQRRDAPFCIALLDIDFFKQVN 191 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD+V+ L GR GGEEF + +A +L +R+ Sbjct: 192 DRYGHEGGDQVLRAFGQLLSSQIRATDCAGRYGGEEFLLVLCDTPLAQAGVLLERIREST 251 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E + +T + G+ + E +I RAD A+Y K +GRNRVV Sbjct: 252 EALPWTQLVHKDLRVTCTLGVTQYRQGETAEALISRADAAMYRGKAAGRNRVV 304 >gi|54022105|ref|YP_116347.1| hypothetical protein nfa1410 [Nocardia farcinica IFM 10152] gi|54013613|dbj|BAD54983.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 618 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 20/169 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 R++ + ID L+GLLN F +L + + L++V D+D F++IND+ GH Sbjct: 180 TRMASEADIDVLTGLLNRRGFDRALNTAIEHATRSGQGLALVLVDLDRFQKINDHLGHRA 239 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++D + + R GG+ FA ++EQ A +L LR + Sbjct: 240 GDAVLQRVADTWSKLLAPDQRLARYGGDAFALLLPNTTEQAAILLTEQLRAAVTTG---- 295 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 SAG+ E S ++ RAD LY AK++GRNR V S Sbjct: 296 ---------CSAGVTSWQPGESGSLLVSRADVGLYRAKQAGRNRTVLES 335 >gi|221197231|ref|ZP_03570278.1| diguanylate cyclase [Burkholderia multivorans CGD2M] gi|221203903|ref|ZP_03576921.1| diguanylate cyclase [Burkholderia multivorans CGD2] gi|221176069|gb|EEE08498.1| diguanylate cyclase [Burkholderia multivorans CGD2] gi|221183785|gb|EEE16185.1| diguanylate cyclase [Burkholderia multivorans CGD2M] Length = 508 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 9/170 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147 ++ ++ +L+R D L+GL N AF ++L + LS++F D+D+FK ND +G Sbjct: 329 VAEAKLYRLARTDSLTGLDNRGAFDAALAQEARRAARSGRPLSVLFVDVDHFKAYNDYYG 388 Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 H GD V+ ++ + R GGEEF + Q AA +A +R+ I Sbjct: 389 HLAGDDVLRRVAQCASGCLRRATDHIARYGGEEFVVTLPDTDAQGAATVAEGIRRAIAAL 448 Query: 207 QINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 I P H+T S G A + + +T++ AD ALY AK GRNRV Sbjct: 449 GIEHVKSPYGHVTASIGTATDAYGRMDAATLLQLADDALYRAKYGGRNRV 498 >gi|330964791|gb|EGH65051.1| GGDEF domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 308 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 Y +Q + D L+ N A SL + + LS++ DID+FK++ND +GH Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISSRHKQPLSLLMLDIDHFKKVNDEYGHH 199 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ L V R GGEEF + A ++ LR+ + N + Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGVTAAELIGERLRQAVRNLEFR 259 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P++ +T+S G + E +++ RAD ALYVAK+ GRNR+ S Sbjct: 260 -ELDPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRLAMAS 308 >gi|319957354|ref|YP_004168617.1| response regulator receiver modulated diguanylate cyclase [Nitratifractor salsuginis DSM 16511] gi|319419758|gb|ADV46868.1| response regulator receiver modulated diguanylate cyclase [Nitratifractor salsuginis DSM 16511] Length = 430 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 91/181 (50%), Gaps = 21/181 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 S + EL S + + ++ D L+GL N AF I S N +LS++ D+D+FK Sbjct: 249 SEITELISSRDFYRKQAKRDELTGLNNRFAFNRKFESLIPKALSENGQLSMILIDLDHFK 308 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH GDKV+ ++ L G F+ R GGEEF + S + EA LA ++R Sbjct: 309 AINDRYGHDFGDKVLTDVARVLEQCIGPKDFLARWGGEEFVVLSQRSLD-EAIELAEEIR 367 Query: 201 KIIENSQINISSGPSIHITISAGI------AERCHKEPISTIIYRADQALYVAKKSGRNR 254 + I +I +G +H + A HK + RAD+ALY AK GRNR Sbjct: 368 RKI--MEIKYENGVQLHCSCGVSTLNPEEDARDAHK-----MFRRADKALYQAKNLGRNR 420 Query: 255 V 255 V Sbjct: 421 V 421 >gi|239995920|ref|ZP_04716444.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126] Length = 329 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 85/159 (53%), Gaps = 9/159 (5%) Query: 104 SRIDCLSGLLNHSAF------ISSLGSYNEKLSI-VFFDIDYFKQINDNFGHPVGDKVIA 156 SR+D L+GL N + + L EK S + DID+FK+IND +GH GDKVI Sbjct: 162 SRVDGLTGLYNRRYWQERFDEMHKLCVRREKPSTALMLDIDHFKRINDTYGHQAGDKVIK 221 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ + GR GGEEFA SS ++A I+A +R++ + + G SI Sbjct: 222 MLAALIKRCVRETDLAGRYGGEEFAIILNDSSVEDAKIVAERIRQLAQRLVVE-HEGESI 280 Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254 T+S G+A+ + + ADQALY AK++GRN+ Sbjct: 281 SFTVSLGLAQFSPDFKGAMAWLECADQALYEAKENGRNQ 319 >gi|254516333|ref|ZP_05128392.1| diguanylate cyclase (ggdef domain) [gamma proteobacterium NOR5-3] gi|219674756|gb|EED31123.1| diguanylate cyclase (ggdef domain) [gamma proteobacterium NOR5-3] Length = 515 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 17/178 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 +EL + +++ D L+GL N ++L + Y+ + + DID FK++N Sbjct: 337 EELKAKNQELEKIAGTDVLTGLCNRLKLDAALKNEIDRADRYSLEFGVALADIDNFKRVN 396 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D++GH +GD V+ ++D L GR GGEEF G+S AND+ K+I Sbjct: 397 DSYGHQIGDDVLVGIADVLQNNLRKTDIAGRWGGEEFLIICPGTS-------ANDMLKLI 449 Query: 204 ENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 E+ ++ I + T+S GI + ++I RADQALY AK +G+N+V + Sbjct: 450 ESLRVKIEQYDFPIAGKQTVSVGITSYFPLDSAASITKRADQALYEAKGAGKNKVTQY 507 >gi|167031165|ref|YP_001666396.1| diguanylate cyclase [Pseudomonas putida GB-1] gi|166857653|gb|ABY96060.1| diguanylate cyclase [Pseudomonas putida GB-1] Length = 642 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + +D L+GL N +A+ + + E L++ D+D+FK+IND++GH GDKV Sbjct: 480 QKALLDPLTGLPNRAAWSERVEREMLDWQENGGHLAMAILDLDHFKRINDSYGHLAGDKV 539 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++DQL F+ R GGEEF + AA +A LR +E + G Sbjct: 540 LKIVADQLRKRLRGRDFIARFGGEEFVLLLPQTPPAAAAQVAELLRATVEACPFHF-KGE 598 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT S G+ E ++ RAD ALY AK+ GRNRV Sbjct: 599 RVVITTSIGLGAFRPGERSDQVLKRADAALYRAKEHGRNRV 639 >gi|172062135|ref|YP_001809787.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] gi|171994652|gb|ACB65571.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] Length = 452 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 14/179 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 + LF ++ + + S D L+G N H+ F+ + E LS++ D+D+FK Sbjct: 275 QRLFEAHTMLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDHFKAY 333 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD + +++ L P V R GGEEFA + + A ++A ++R+ Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARLVAEEVRE 393 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257 + + + S P+ +++S G A E +ST +I AD ALY AK GRNRVV Sbjct: 394 AVLRLDLAMPSSPAGRVSVSVGCATVSADE-LSTPDALIEAADAALYRAKDGGRNRVVA 451 >gi|330830020|ref|YP_004392972.1| PAS:GGDEF domain-containing protein [Aeromonas veronii B565] gi|328805156|gb|AEB50355.1| PAS:GGDEF domain protein [Aeromonas veronii B565] Length = 650 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 6/158 (3%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GLLN + SL +Y E+ ++VF D+D FK +NDN+GH GD+++ ++ +L Sbjct: 221 DSLTGLLNRYGLMKSLEAYCGLGERFALVFMDLDNFKLVNDNYGHKAGDRLLERVAGRLK 280 Query: 164 VVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + + + RLGG+EF A LG+ A +A+ + + + +S P + I S Sbjct: 281 QICPRDVELARLGGDEFTALVPLGNQGDRAQEVADQMLSQM-TKPLQLSGLPEVTIGGSI 339 Query: 223 GIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 GIA + +I RAD A+Y AK+ GR R F+ Sbjct: 340 GIAIYPDDADDGDNLITRADMAMYQAKQMGRLRWQRFT 377 >gi|306813466|ref|ZP_07447656.1| hypothetical protein ECNC101_16212 [Escherichia coli NC101] gi|305853211|gb|EFM53651.1| hypothetical protein ECNC101_16212 [Escherichia coli NC101] Length = 296 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L ++ DID FK +ND +GH +GD V+ L+ L V R GGEEF ++ Sbjct: 159 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATN 218 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 ++EA + ++++N I S G I+IT++AG++ +EP+ +I RAD+A+Y K Sbjct: 219 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGK 277 Query: 249 KSGRNRVVCFSDIEN 263 ++GRNR + F D +N Sbjct: 278 QTGRNRCM-FIDEQN 291 >gi|209525930|ref|ZP_03274464.1| diguanylate cyclase with PAS/PAC and GAF sensors [Arthrospira maxima CS-328] gi|209493607|gb|EDZ93928.1| diguanylate cyclase with PAS/PAC and GAF sensors [Arthrospira maxima CS-328] Length = 1041 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 12/206 (5%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGS 124 ++ +T L + G + +L I++ + ++ +D L+G+ N F L Sbjct: 835 MLKQLTEQLAIAIQQGELYHQLQIAHEELEKVYNLDSLTGIANRRHFDHILQQEWLQLQR 894 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA 183 + LSI+ DIDYFK ND +GH GDK + +++ + P V R GGEEF Sbjct: 895 EKQPLSIIMCDIDYFKCYNDTYGHIAGDKCLQRVANAIKNSLKRPRDLVARYGGEEFVIL 954 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPS--IHITISAGIAER--CHKEPISTIIYR 239 + + ++ +++ + + + P+ +T+S GIA + HK+ + +++ Sbjct: 955 LPNTPIEGGLEISQQIQEAVFKLNMQPGAIPANFQRVTVSMGIASKIPSHKQSPTQLLFD 1014 Query: 240 ADQALYVAKKSGRNRVVCFSDIENNT 265 AD+ALY AK +GRN+ V + E+N+ Sbjct: 1015 ADRALYQAKNNGRNQYVIANYPEHNS 1040 >gi|71909382|ref|YP_286969.1| PAS:GGDEF [Dechloromonas aromatica RCB] gi|71849003|gb|AAZ48499.1| PAS:GGDEF protein [Dechloromonas aromatica RCB] Length = 328 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 11/172 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + +D L+GL N +F L Y E ++++ D+DYFK+ ND +GH GD Sbjct: 155 LQQQATMDGLTGLANRRSFDEKLHVEWSRSQRYGEPIALILADVDYFKRYNDCYGHQGGD 214 Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ L VF R GGEEFA G+ Q A +A LR +E S + + Sbjct: 215 ECLKAVAGILRREVFRPTDMAARYGGEEFAIILPGTDLQGALTVAERLRADMERSALPHA 274 Query: 211 SSGPSIHITISAGIAE-RCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSD 260 +S S +T+S G+A +E +S T++ +AD+ALY AK SGRN V D Sbjct: 275 ASEVSPWVTLSIGVAAIVPDREALSATLVAKADRALYKAKGSGRNVVRAGGD 326 >gi|46581471|ref|YP_012279.1| GAF domain/sensory box/EAL domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450893|gb|AAS97539.1| GAF domain/sensory box/EAL domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|311235123|gb|ADP87977.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio vulgaris RCH1] Length = 827 Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 2/131 (1%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 ++ L+++ DID+FK +ND +GH GD+V+ + V GRLGGEEFAA Sbjct: 676 HDSGLAVLMLDIDHFKNVNDLYGHQAGDEVLRAFAACCVEALRAYDVFGRLGGEEFAALL 735 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243 +S +EA A LRK +E + + G ++ T+S G+ + ++ RAD+A Sbjct: 736 PAASPEEAMETAERLRKRVERRSV-VYEGTALQCTVSVGVTSLAAADLGFDDMLRRADRA 794 Query: 244 LYVAKKSGRNR 254 LY AK GRNR Sbjct: 795 LYAAKDHGRNR 805 >gi|85715174|ref|ZP_01046158.1| hypothetical protein NB311A_01280 [Nitrobacter sp. Nb-311A] gi|85698089|gb|EAQ35962.1| hypothetical protein NB311A_01280 [Nitrobacter sp. Nb-311A] Length = 264 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 10/177 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDY 138 S L++L I++ ++ ++ D L+ N +AF + + +Y +++ +++ D+D+ Sbjct: 74 SKLRQLAIAHEQLMVIASTDGLTSCFNRAAFTTLVDAYLDRVDRQEKGGEGALLVMDVDH 133 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +NDNFGH +GD+ + ++ + VGR+GGEEF+ G + ++A Sbjct: 134 FKNVNDNFGHDMGDEALKLIAQSIKSTLREVDLVGRMGGEEFSVFLPGIAPDRVVMVAER 193 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R+ ++ G +++IS G A S + AD+ LY AK+ GR+RV Sbjct: 194 IRETVKAVNF-CPQGIPCNLSISIGGATYVRTASFSELYKLADKLLYDAKRQGRDRV 249 >gi|315297436|gb|EFU56715.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3] Length = 296 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKATNDEEACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|309388474|gb|ADO76354.1| diguanylate cyclase [Halanaerobium praevalens DSM 2228] Length = 843 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 9/173 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++ ++ +LS D L+ L NHS F L + EK S+ DID FK ND +GH GD+ Sbjct: 675 LNHQKVKKLSVTDGLTKLYNHSYFDQELAKKDGEKYSVAILDIDNFKDFNDLYGHQAGDQ 734 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-- 211 V+ LS+ L V R GGEEF EQE IL +++++E + N+ Sbjct: 735 VLKKLSELLKSAVRQKDIVARYGGEEF-VIYFSIIEQE--ILLQVIKRLMEKIR-NLEVC 790 Query: 212 -SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +T+S GIA + + ++I +AD ALY+AK SGR++ +I+ Sbjct: 791 FEDKKLGVTVSMGIAINKSGNDSAESLIKKADNALYIAKGSGRDQFKFHKNID 843 >gi|311279833|ref|YP_003942064.1| diguanylate cyclase [Enterobacter cloacae SCF1] gi|308749028|gb|ADO48780.1| diguanylate cyclase [Enterobacter cloacae SCF1] Length = 312 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 6/155 (3%) Query: 107 DCLSGL----LNHSAFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL + +F + L ++ KL I+ DID+FK+IND +GH VGD V+ +++ Sbjct: 132 DTLTGLPLRRILDESFDAQLSDESDGKLYILLLDIDHFKRINDTWGHLVGDGVLRAFAEK 191 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L + V R GGEEF S+ EA + + I + QI++ I IT++ Sbjct: 192 LRASTRSYEPVYRYGGEEFIVILKAHSQHEACRTGLRITQAIADYQIHVEPH-EIRITVT 250 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ EP+ + RAD A+Y+ K+SGRNR + Sbjct: 251 CGLTPVQQGEPLHRALERADAAMYMGKQSGRNRCM 285 >gi|300907296|ref|ZP_07124947.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|301306137|ref|ZP_07212214.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1] gi|300400932|gb|EFJ84470.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|300838637|gb|EFK66397.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1] gi|315253470|gb|EFU33438.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1] Length = 460 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSR----IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDI 136 ++L+ELF ++SR +D L+ LLN + F + N LS++ D+ Sbjct: 281 TLLRELF------EEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV 334 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK+IND +GH GD+++ +S + +V R GG+EF +SE E A Sbjct: 335 DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTA 394 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E +++ ++G I +++S G A +I AD+ALY+ K+ GRNRV Sbjct: 395 ERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYITKRRGRNRVE 454 Query: 257 CFS 259 + Sbjct: 455 LWK 457 >gi|187920674|ref|YP_001889706.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] gi|187719112|gb|ACD20335.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] Length = 371 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 91/186 (48%), Gaps = 24/186 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QL D L+GL N F + Y ++ +F DID FK+IND +GH Sbjct: 188 ERLKQLGMTDSLTGLANRRYFDERMREEIMRACRYGVPVACLFIDIDSFKRINDTYGHQT 247 Query: 151 GDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD+ +A ++ Q V + T V R GGEEF AA L +A +A +R +E Sbjct: 248 GDRALAAVAACVRQQVRLGDT---VARYGGEEF-AALLQGDRADALTVAERVRLAVERLA 303 Query: 208 INISSGPSIHITISAGIAERC-HKEPI------STIIYRADQALYVAKKSGRNRV---VC 257 + G I +T+S G+A R P ++ AD+A+Y AK++GRNR+ V Sbjct: 304 LQDDHGERIVLTVSIGVAARTISGTPAEAAKLGGAMMEEADRAMYQAKRNGRNRIEALVK 363 Query: 258 FSDIEN 263 D+E Sbjct: 364 AGDVET 369 >gi|288923860|ref|ZP_06417943.1| diguanylate cyclase [Frankia sp. EUN1f] gi|288344799|gb|EFC79245.1| diguanylate cyclase [Frankia sp. EUN1f] Length = 1228 Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y + D L+GL N F+ + S D+D FKQ+ND GH Sbjct: 1059 YEEARHSAATDPLTGLPNRRHFVEQATVEADARLPADRPTSAAMIDVDRFKQVNDLHGHA 1118 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ ++ ++ GRLGGEEFA G + A L +R + + Sbjct: 1119 VGDEVLVEIAHRIERCLRRGDLAGRLGGEEFAVLVTGGPDVAHA-LGERVRLAVCERPVQ 1177 Query: 210 ISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 S+GP +H+T+S G A EP ++ ++ ADQ+LY AK +GRN+ V Sbjct: 1178 TSAGP-LHVTVSVGTATVDPDEPSLAAVLAHADQSLYAAKSAGRNQTV 1224 >gi|241205122|ref|YP_002976218.1| response regulator receiver modulated diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859012|gb|ACS56679.1| response regulator receiver modulated diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 443 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 11/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQIND 144 E ++ + D L+GL N F + NE L S+ DID+FK++ND Sbjct: 261 ETLAQMRQLRAAAACDYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLND 320 Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH +GDKV+ ++++L +F G+ + RLGGEEFA A L +++R I Sbjct: 321 TYGHEIGDKVLKAVANRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDI 380 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ + + +TIS GIAE E + ADQ LY+AK GRN+V +SD Sbjct: 381 SRLKVT-ADDEELGVTISIGIAEIAGYETFENYLNAADQFLYMAKHRGRNQV--YSD 434 >gi|241204911|ref|YP_002976007.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858801|gb|ACS56468.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 417 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 12/188 (6%) Query: 88 SILKELF-ISYNRIS--QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 SIL+EL + +RI Q + ID L+ + AF IS + LS + FDID Sbjct: 153 SILEELAGAAMDRIELMQSAAIDSLTEAMTRRAFKQEADQLISLALRHKHDLSCIVFDID 212 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK++ND GH GD+V+ ++ GRLGGEEFA + AA +A Sbjct: 213 HFKKVNDTHGHAAGDEVLKAVASTCKTTLRAGDLFGRLGGEEFAVILPHVDREGAAAVAE 272 Query: 198 DLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR + + I G ++ +T S G A + I T++ +AD A+Y AK GRNR V Sbjct: 273 KLRAAVASHIIRGDHG-ALTVTASFGTSALSIVSKEIETLLAQADGAMYQAKHGGRNRCV 331 Query: 257 CFSDIENN 264 +S I + Sbjct: 332 SWSSIHAD 339 >gi|86747317|ref|YP_483813.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] gi|86570345|gb|ABD04902.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Rhodopseudomonas palustris HaA2] Length = 743 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 14/181 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 + E + S +I+ ++R D L+GLLN AF + L + E S++ D+D FK + Sbjct: 299 ITERYRSEQQIAHMARHDLLTGLLNRGAFHERMDEACARLRRWGETFSVIMLDLDRFKLV 358 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDLR 200 ND+ GHP GD ++ + +L + RLGG+EFA + + EA A+ + Sbjct: 359 NDSLGHPAGDALLRAVVSRLKACIRETDVLARLGGDEFAVLQTRTKDSYNEAVAFADRIV 418 Query: 201 K-IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +I+ +I+ G + I+ SAGIA H +I AD ALY AK +GRN V F Sbjct: 419 NCLIDPIEID---GHQLVISTSAGIALAPQHGTDSDELIKNADLALYRAKAAGRNGYVTF 475 Query: 259 S 259 Sbjct: 476 E 476 >gi|120553201|ref|YP_957552.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120323050|gb|ABM17365.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 339 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 31/181 (17%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL--GSYNEKLS-----IVFFDIDYFKQINDNFGHPV 150 R+ QL+ ID L+G+ N + L + N + S +V DID+FK+IND +GH V Sbjct: 160 RRLEQLATIDPLTGVKNRRSMDEELDVAAANAERSGLPYALVLLDIDHFKKINDEYGHGV 219 Query: 151 GDKVIAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 GD V+ L SDQL R GGEEF G + N+L+ Sbjct: 220 GDDVLTELVALLESNTRRSDQLF----------RYGGEEFVLLLPGVDGVNLRAVMNNLQ 269 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +++ + GP +T S G+A H E + + + RAD ALY AK++GR+R+V + Sbjct: 270 QVLRK-YLKHPGGP---VTASFGVALLGHGESVDSWLARADNALYTAKETGRDRIVYAEE 325 Query: 261 I 261 + Sbjct: 326 V 326 >gi|254701220|ref|ZP_05163048.1| GGDEF domain protein [Brucella suis bv. 5 str. 513] gi|261751759|ref|ZP_05995468.1| predicted protein [Brucella suis bv. 5 str. 513] gi|261741512|gb|EEY29438.1| predicted protein [Brucella suis bv. 5 str. 513] Length = 386 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 84/169 (49%), Gaps = 18/169 (10%) Query: 101 SQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 S+ S ID LS + N F + + +I+ D+DYFK++ND +GH GD+V Sbjct: 219 SEQSEIDALSQIYNRRGFDRHVMRRLMRKGPDTPYAIIMSDLDYFKRVNDTYGHDCGDRV 278 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 I L P R+GGEEF G+ A+ A+DL + + + +S SG Sbjct: 279 IEAFGGLLRTHLPKPAVAARMGGEEFVVFMPGAD----AVAAHDLAQTLRTTMTALSFSG 334 Query: 214 PSIHI--TISAGIAE-RCHKEPISTIIY----RADQALYVAKKSGRNRV 255 + T S G+AE R + TI Y RAD ALY AKK+GRNRV Sbjct: 335 DAAEWMPTASFGVAEHRVGEGLYDTIRYDTIRRADGALYEAKKAGRNRV 383 >gi|253701549|ref|YP_003022738.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M21] gi|251776399|gb|ACT18980.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M21] Length = 306 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 95/182 (52%), Gaps = 20/182 (10%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S+ EL + ++ +L+ ID L+ L N L S E LS+V DIDYFK Sbjct: 126 SLQDELKKANEQLKRLTNIDHLTNLFNRRYLSEILESEFFRARRNRENLSLVIIDIDYFK 185 Query: 141 QINDNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +ND++GH GD V +A L+ Q + + + R GGEEF G+S Q A ++A Sbjct: 186 NVNDSYGHQNGDVVLASVAGLAQQQLRAYDS---AARYGGEEFVLVLPGTSLQGAEMVAE 242 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRN 253 LR+ + S + +TISAG+A P I ++ +AD+ALY AK++GRN Sbjct: 243 RLRQSVLEFGFP-SPMEDLTLTISAGVA--TFPSPSIDNIDSLFRQADEALYRAKQTGRN 299 Query: 254 RV 255 RV Sbjct: 300 RV 301 >gi|34495986|ref|NP_900201.1| hypothetical protein CV_0531 [Chromobacterium violaceum ATCC 12472] gi|34101840|gb|AAQ58208.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 400 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 26/200 (13%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121 L + II+ +++LL + L ++ ++ L+ D L+ L N + +++ Sbjct: 202 LVMWIIASAMAILLVRLLHKWLGQMRSLMQKLEALAGTDELTQLPNRRTWDIQIEMMLAT 261 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGG 177 Y + +++ FD+D+FKQ ND++GHP GD+++ ++ V+ + M R GG Sbjct: 262 ARRYRQPIAVALFDLDHFKQFNDSYGHPEGDRLLR----EVAVLIKSRMRQSDLFARFGG 317 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 EEF A + + +AA LR + + Q T S G+ E I + + Sbjct: 318 EEFVLALMDCNLDQAAARIESLRGNLPDQQ-----------TFSVGVTVWLEGERIHSTL 366 Query: 238 YRADQALYVAKKSGRNRVVC 257 RAD+ALY+AK GR+RVV Sbjct: 367 ARADKALYLAKNGGRDRVVS 386 >gi|322835424|ref|YP_004215450.1| diguanylate cyclase [Rahnella sp. Y9602] gi|321170625|gb|ADW76323.1| diguanylate cyclase [Rahnella sp. Y9602] Length = 374 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 111/203 (54%), Gaps = 25/203 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125 L ++I+S+ IS LL I+G L+ L ++ + D L+G L AF + SY Sbjct: 185 LIIIILSMVISYLLSLIAGGYLRVL-------NEYASKDGLTGCLRREAFYAK-ASYELE 236 Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 N S++ D+D+ + +N+ +GH GD I+ +++ ++ FVGR+GG+EF Sbjct: 237 KSKKNNVPFSVLVIDLDHLRDVNNTYGHAKGDTAISLIAETILKSLRGTDFVGRVGGDEF 296 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIY 238 ++ +A ++AN +R +++ +++ + +++S GI++ C K+ + II Sbjct: 297 IVILKDTTPADALLIANRIRHSVKSLKLD-----DLSLSVSIGISQ-CEKQNATLQEIIS 350 Query: 239 RADQALYVAKKSGRNRVVCFSDI 261 +AD LY+AK+ RN VV +DI Sbjct: 351 KADTNLYLAKRQ-RNEVVFENDI 372 >gi|159897326|ref|YP_001543573.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] gi|159890365|gb|ABX03445.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] Length = 408 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 11/168 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S L+ ID L+G+ N A I+ + +++ DID FKQIND +GH GD Sbjct: 214 LSALASIDVLTGIANRRAINEYLEQAIAKWRRNQQGFAVIMLDIDCFKQINDRYGHHAGD 273 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L +GR GGEEF + Q+A ++A LR+ I+ Q + + Sbjct: 274 SVLRHIALVLSEQVRINDLIGRWGGEEFLLIVDADTIQQATLMAERLRQAIQQ-QPTVWN 332 Query: 213 GPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I T+S GIA C H + ++ AD ALY AK++G+NR + + Sbjct: 333 DQVIQHTVSIGIAV-CGMHGFNEAQLLTAADLALYEAKETGKNRWIVY 379 >gi|89902786|ref|YP_525257.1| diguanylate cyclase [Rhodoferax ferrireducens T118] gi|89347523|gb|ABD71726.1| diguanylate cyclase [Rhodoferax ferrireducens T118] Length = 447 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 90 LKELFISYNRISQLSR--IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 LKEL + +R D S LL A + +S++ D+DYFK IND+F Sbjct: 283 LKELSVRDPLTQMFNRRYFDEQSALLYQQAM-----RHGWSVSVMVGDLDYFKSINDDFS 337 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD+V+ ++ L + V R GGEEF A S+ Q+AAI LR IE Sbjct: 338 HAIGDEVLRRVALILRKNTRSTDIVARYGGEEFVIAFPESTVQQAAIRCEALRAAIEQHT 397 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P + +T+S G+ + + I ++ AD+ LY AK+SGRNRVV Sbjct: 398 WQ-EVHPELRVTMSMGLCDDTKRGSIEKMLAAADEGLYEAKRSGRNRVV 445 >gi|54308256|ref|YP_129276.1| GGDEF family protein [Photobacterium profundum SS9] gi|46912684|emb|CAG19474.1| hypothetical GGDEF family protein [Photobacterium profundum SS9] Length = 339 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 79/155 (50%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+G+LN AF Y N LS + DID FK ND FGH +GD+V+ ++ +L Sbjct: 182 DALTGILNRRAFDRDFQHYIESNTPLSFILLDIDKFKDFNDKFGHLMGDQVLKTIARRLK 241 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIH-ITIS 221 V R GGEEFA + A A R+ E S I+ +G ++ IT S Sbjct: 242 VNCRDYAQAYRFGGEEFAIILPHKMKASARQQAETFRRAFERISVIDKKTGQRVNSITAS 301 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE+ E +I RAD + AKK GRNRV+ Sbjct: 302 FGVAEKQPNESGECLIDRADSFMNQAKKLGRNRVL 336 >gi|114561977|ref|YP_749490.1| diguanylate cyclase with PAS/PAC sensor [Shewanella frigidimarina NCIMB 400] gi|114333270|gb|ABI70652.1| diguanylate cyclase with PAS/PAC sensor [Shewanella frigidimarina NCIMB 400] Length = 374 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 13/171 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 YN++ L+ D L+GL N AF +L + +++ L ++ D+DYFK ND +GH Sbjct: 201 YNKLRHLAHTDKLTGLSNRHAFDDALQTNWNDSINHDQPLCLIIIDVDYFKMFNDQYGHV 260 Query: 150 VGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQ 207 GDK + ++ L V + R GGEEF S+ A +A ++ R+I + S Sbjct: 261 NGDKCLQKIAQVLAEVLPSNNAMAARYGGEEFVVILPNSNPLTAEYIAKNIQRRINQLSF 320 Query: 208 INISSGPSIHITISAGIA-ERC--HKEPISTIIYRADQALYVAKKSGRNRV 255 +I I++S GIA ER ++ P + ++ AD ALY AK +GRNR+ Sbjct: 321 TDIGLPAQTKISVSQGIACERSGQYRTP-TALVCAADTALYRAKSTGRNRI 370 >gi|324119325|gb|EGC13212.1| GGDEF domain-containing protein [Escherichia coli E1167] Length = 298 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDQFKLVNDTYGHLIGDVVLRTL 190 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 249 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293 >gi|323497617|ref|ZP_08102634.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] gi|323317366|gb|EGA70360.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] Length = 427 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 15/173 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEK------LSIVFFDIDYFKQI 142 LKE I + ++L+ D L+G +N A L +Y+E LS+++ DID+FK I Sbjct: 259 LKEQNIHF---AELASRDALTGAMNRHAIRDWLDKNYDETNKLSKTLSVLYLDIDHFKSI 315 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH +GD ++ + ++ + R GGEEF G +EA+ LA +R+ Sbjct: 316 NDLYGHSMGDDILREFTMVVLSSLSASERLVRWGGEEFVVFCPGRGLEEASELAEQIRRK 375 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E ++I I +T S G+A +E S ++ RAD+ALY AK+ GRNRV Sbjct: 376 VE-ARIWIHGDK---LTTSIGVAT-LGEERTSDMLIRADEALYSAKRLGRNRV 423 >gi|325981379|ref|YP_004293781.1| response regulator receiver modulated diguanylate cyclase [Nitrosomonas sp. AL212] gi|325530898|gb|ADZ25619.1| response regulator receiver modulated diguanylate cyclase [Nitrosomonas sp. AL212] Length = 651 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 11/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 EL ++ ++ + D L+ L N + + +L + + I+ DID+FK IND Sbjct: 453 ELAVTNRKLEYYALTDMLTELPNRRSGMETLSETWSIANRSGQLMVIMLIDIDHFKSIND 512 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAIL-ANDLRKI 202 N+GH +GDKV+ +S + R+GGEEF LG+++ +++IL A LR Sbjct: 513 NYGHSIGDKVLKEVSSIIRKTARKGDTFCRMGGEEFLVVCQLGNADVKSSILFAERLRHQ 572 Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I QIN+ I ITIS GIA + + ++ AD+ALY AK +GRNRV Sbjct: 573 ISQQQINVDE-IHIQITISIGIALKEINMRNEDHLVIAADKALYAAKNAGRNRV 625 >gi|167564771|ref|ZP_02357687.1| hypothetical protein BoklE_19615 [Burkholderia oklahomensis EO147] Length = 444 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N+ +++V D+D+FK N Sbjct: 256 RRLFDAHASLVRTAAHDALTMVYNRSYFNEQFEKAFRHAHRHNQPIALVMVDVDHFKHYN 315 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD + ++ L V P FV R GGEEFA G+ E+ AA +A +R+ Sbjct: 316 DAFGHLQGDTCLVAVAAALSGVANRPNDFVARYGGEEFAVVLPGTDERGAATIAEQVRQS 375 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I P ++T+SAG A E ++ +D ALY AK GRN Sbjct: 376 VERLRIAADMPPG-YVTVSAGYATSSGNPFETPEALVAASDAALYRAKMLGRN 427 >gi|91778092|ref|YP_553300.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans LB400] gi|91690752|gb|ABE33950.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans LB400] Length = 790 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 12/178 (6%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFG 147 F+ ++++QL+ D L+GL N +F+ + ++S +F DID FK +ND FG Sbjct: 202 FLLESQLAQLAATDPLTGLQNRRSFVKQAERRLDTLAPETRISAIFLDIDNFKSLNDRFG 261 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD + ++ L+ V R+GGEEF A L A LA LR I + Sbjct: 262 HAVGDHALYEVAHALMEEASADDSVSRIGGEEF-ALLLCDGLTGALHLAERLRLAIAAIE 320 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 P +T S G+AE E I ++ RAD+AL AK SGRNRV + + Sbjct: 321 R-----PDGQLTASFGVAEHRSGESIMMLLDRADEALLRAKHSGRNRVCAERPLPRDA 373 >gi|27383111|ref|NP_774640.1| hypothetical protein blr8000 [Bradyrhizobium japonicum USDA 110] gi|27356285|dbj|BAC53265.1| blr8000 [Bradyrhizobium japonicum USDA 110] Length = 865 Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 64/189 (33%), Positives = 94/189 (49%), Gaps = 14/189 (7%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDY 138 LG +L L S RI QL+ D +S L N +L E ++ F D+D Sbjct: 398 LGLAFERMLTHLRASTQRIRQLAFYDTVSRLPNREKMRVDAPALIGAEEGAALFFLDLDG 457 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAA 193 FK IND FGH GD+++ ++++L + T G R+GG+EF A G EAA Sbjct: 458 FKSINDTFGHKAGDELLRMVAERLSNLLMTKGAAGKCLLARVGGDEFVAIIAGVKTVEAA 517 Query: 194 ILANDLRKIIENSQINI---SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 L+ R++IE Q++ S+ +I ++I I H ++ RAD A+YVAK S Sbjct: 518 SLS--AREMIETLQVSFKLQSNHATIGVSIGIAICP-THGTTYDDLLIRADLAMYVAKSS 574 Query: 251 GRNRVVCFS 259 GRN F+ Sbjct: 575 GRNTYAFFT 583 >gi|331652907|ref|ZP_08353912.1| putative GGDEF domain protein [Escherichia coli M718] gi|331049005|gb|EGI21077.1| putative GGDEF domain protein [Escherichia coli M718] Length = 298 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 249 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293 >gi|114798852|ref|YP_760979.1| response regulator PleD [Hyphomonas neptunium ATCC 15444] gi|114739026|gb|ABI77151.1| response regulator PleD [Hyphomonas neptunium ATCC 15444] Length = 455 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 111/251 (44%), Gaps = 24/251 (9%) Query: 21 SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE-------YILVENLSLVI 73 SF P + +F + +VI I + + GLE I ++ L Sbjct: 208 SFDPLKLIAHFKMNPVTRSISVILICDP---HDKAKALRGLEIGASDMITIPIDRQELAA 264 Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYN 126 T + YI IL++ +R +LS ID L+GL N F+ N Sbjct: 265 RIRTQTRRTRYID--ILRQ---RVDRGLELSVIDQLTGLHNRRYMNGQLEQFMQRAARGN 319 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + LS++ DID+FK +ND GH GD V+ + +L V R GGEEF Sbjct: 320 QPLSLMMTDIDHFKAVNDTHGHQAGDDVLREIGKRLRANVRPTDVVCRTGGEEFVVLMPN 379 Query: 187 SSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAE-RCHKEPISTIIYRADQAL 244 + A A +RK + + + G ++ IT+SAG++ + + +++RAD AL Sbjct: 380 TPGDLACAAAERIRKAVAAEEFPVLGGSQNLRITVSAGVSTLQGAGDTTDDLMHRADTAL 439 Query: 245 YVAKKSGRNRV 255 Y AK GRNRV Sbjct: 440 YQAKTGGRNRV 450 >gi|154174844|ref|YP_001408521.1| diguanylate cyclase [Campylobacter curvus 525.92] gi|112803042|gb|EAU00386.1| diguanylate cyclase [Campylobacter curvus 525.92] Length = 523 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 8/160 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S+ D L+ + A +S + Y SI F DID+FK+IND +GH GD +++ Sbjct: 360 SKEDFLTKVATKRALMSEIQKIEEAYKRYGTDYSICFVDIDFFKKINDTYGHEAGDVILS 419 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L F+GR GGEEF +S + A+ LR +IEN + I +I Sbjct: 420 SVAQVLKKYARKIDFIGRYGGEEFVILLPSTSLNDGVKFADKLRLMIENFKF-IYKTETI 478 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++IS+G+A R + + AD+ LY AK+ GRN+V+ Sbjct: 479 KVSISSGVATRSANLNDTMTLENADKMLYAAKQGGRNQVM 518 >gi|126090205|ref|YP_001041686.1| hypothetical protein Sbal_4568 [Shewanella baltica OS155] gi|126174498|ref|YP_001050647.1| diguanylate cyclase [Shewanella baltica OS155] gi|125997703|gb|ABN61778.1| diguanylate cyclase [Shewanella baltica OS155] gi|125999861|gb|ABN63931.1| hypothetical protein Sbal_4568 [Shewanella baltica OS155] Length = 325 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 10/162 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 L+ D L+G LN + L Y ++ S++ DID+FK +NDNFGH +GD++ Sbjct: 164 HLANTDELTGALNRKQLKTKLELSVYEYQQQQIPASLLLIDIDFFKMVNDNFGHIMGDQL 223 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + S + + R GGEEF + + AAI+A DLR+ IE + P Sbjct: 224 LNKFSQHIQKKIRKDDLLFRFGGEEFLILLPNTQFESAAIVAEDLRRSIEEQHF-LDQHP 282 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T S G+A+ + + T + D LY AK +GRN VV Sbjct: 283 --QVTCSIGVADLRQADTLDTWLKTCDNLLYTAKNAGRNCVV 322 >gi|330806679|ref|YP_004351141.1| diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374787|gb|AEA66137.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 374 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 86/165 (52%), Gaps = 14/165 (8%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-YNE------KLSIVFFDIDYFKQINDNFGHPVGDK 153 ++ ++ D L+GL + AF YNE L V D+D+FK IND +GH VGD+ Sbjct: 213 TRAAQTDELTGLKSRRAFFEHAQQLYNECKAKRQGLCAVMLDMDHFKHINDTYGHQVGDQ 272 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + + F GRLGGEEFA +S + A +A L I I Sbjct: 273 VLRQMGTVISSSFRATDIHGRLGGEEFAILLPDTSIEVATQIAERLIDTIAGLTIE---- 328 Query: 214 PSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P HI+ S G+A E C+K+ + +++ AD+ALY AK GRNRV Sbjct: 329 PVHHISASLGVASTEACNKD-LHSLMNDADKALYRAKALGRNRVA 372 >gi|331642120|ref|ZP_08343255.1| putative GGDEF domain protein [Escherichia coli H736] gi|323942082|gb|EGB38259.1| GGDEF domain-containing protein [Escherichia coli E482] gi|323947870|gb|EGB43866.1| GGDEF domain-containing protein [Escherichia coli H120] gi|331038918|gb|EGI11138.1| putative GGDEF domain protein [Escherichia coli H736] Length = 298 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 249 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293 >gi|285018815|ref|YP_003376526.1| sensor protein [Xanthomonas albilineans GPE PC73] gi|283474033|emb|CBA16534.1| hypothetical sensor protein [Xanthomonas albilineans] Length = 374 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 83/164 (50%), Gaps = 14/164 (8%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GLLN A+ ++L E LS+ D+DYFK IND GH GD+V+ Sbjct: 218 ARTDPLTGLLNRRAYATALMVEVESAQVNAAALSVAILDLDYFKSINDLHGHDKGDEVLL 277 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ L V V R GGEEFA ++A LR+ E + + + Sbjct: 278 ALAQMLRVHAPPDCLVARYGGEEFAILLPWMQTEQAVHTCEMLRE--ETGLLRL----GV 331 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T S G+A E ++ RADQALY AK++GR+ VC ++ Sbjct: 332 PLTASIGVATLRAPESAEQLLKRADQALYQAKRAGRD-CVCLAE 374 >gi|157963010|ref|YP_001503044.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157848010|gb|ABV88509.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 627 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 +S L+ D L+ L N + +Y E+ LS++ FDIDYFK IND FGH VGD Sbjct: 462 LSALALTDDLTQLPNRRYIYAKAQTYFEQAQRTESPLSVITFDIDYFKLINDKFGHEVGD 521 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + L+D V T R+GGEEF + + +A L + + S Sbjct: 522 HALKLLADTCREVLATQYKTARIGGEEFLVILPDTDLAQGYKIAQALVHSVRYG--DFSQ 579 Query: 213 GPS-IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 PS +TISAG+A +S ++ +ADQALY+AK GRN+ Sbjct: 580 LPSGFSMTISAGVASLSTADSKLSLLLKKADQALYIAKTEGRNQA 624 >gi|94499228|ref|ZP_01305766.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Oceanobacter sp. RED65] gi|94428860|gb|EAT13832.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Oceanobacter sp. RED65] Length = 375 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 11/175 (6%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYF 139 G ++L + ++I +L+ D L+GL N + L + ++ F D+D+F Sbjct: 181 GERHRQLKGAMSKIEELAITDELTGLYNRRHVMEILNQQRALANRSQYRFTVCFLDLDHF 240 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K++ND +GHP GDKV+ + + R+GGEEF + +++A + + Sbjct: 241 KKVNDQYGHPFGDKVLKRFASLVRTSLREVDIGARIGGEEFILILADTCQEDAHEV---V 297 Query: 200 RKIIENSQINI-SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 R++ + Q + S+ +T+SAGI E E + +I RAD+ LY AK+ GRN Sbjct: 298 RRMAQRWQQTLFEPHESLVMTLSAGITEFHPPETLEAMIERADELLYEAKRDGRN 352 >gi|295798123|emb|CAX68956.1| two component sensor with CHASE2 and GGDEF domain [uncultured bacterium] Length = 559 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 128/268 (47%), Gaps = 38/268 (14%) Query: 27 FMIYFSIFFSIF-----------IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75 F+I F FF I + TVI +A I LF I FY + L+ +++L+ I Sbjct: 285 FLISFMGFFIILSLALLVSAMFGVLTVILLA-IILFGIS---FYLFQQQLIFDITLMYIG 340 Query: 76 ITISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYN--- 126 + ++L I I +E LF+ R+ + S D L+G + S +G + Sbjct: 341 LVLTL----IGAVIYREGQLFLENLRLREESSRDPLTGFYSRRFMELKLKSEVGRLSRGF 396 Query: 127 ---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 +++S++ D+D FK +ND+FGH GD+V+ ++ + + R GG+EF Sbjct: 397 HSAKEVSVIMIDLDNFKLVNDSFGHAEGDRVLKTMAQSIRNSVRKEEVICRFGGDEFCVI 456 Query: 184 ALGSSEQEAAILANDLRKIIEN----SQINISSGPSIHITISAGIAERCHKEPIST--II 237 + ++A A LR++I N S +I +T S G+A + + ++ Sbjct: 457 LPNTELKDATRFAEKLRQLIANNPDLSYRTAGGTDTIRVTGSIGVASVSGTKAMEPGGLL 516 Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNT 265 ADQALY AKK GRNR VC D + +T Sbjct: 517 KAADQALYRAKKGGRNR-VCVYDPKQDT 543 >gi|307725816|ref|YP_003909029.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1003] gi|307586341|gb|ADN59738.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1003] Length = 667 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 11/182 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYF 139 SG+ + E ++ R++QL+ D L+GL N +A + S E + ++F D+D F Sbjct: 220 SGTDITEERLAQERLTQLANTDSLTGLANRNAIQDKIRSAIEEAAPGESVGVLFLDLDNF 279 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K++ND++GH GD++I +S + + RLGG+EF A + QE A Sbjct: 280 KKVNDHYGHVFGDRLIRDVSAAIGACLNEGDTLARLGGDEFIVLAAKGTAQELEATA--- 336 Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++I+E + S G ++ S GIA H + + ++I AD A+YVAK +G+ Sbjct: 337 QRILERMRTPFSLGLVEVYTGCSIGIARYPEHGDNLESLIRSADTAMYVAKDAGKRTHRV 396 Query: 258 FS 259 FS Sbjct: 397 FS 398 >gi|83747622|ref|ZP_00944658.1| Hypothetical Protein RRSL_02307 [Ralstonia solanacearum UW551] gi|83725674|gb|EAP72816.1| Hypothetical Protein RRSL_02307 [Ralstonia solanacearum UW551] Length = 487 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 11/198 (5%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 LV++ ++L + Y+ L+ R ++L+ D L+GL N A L + Sbjct: 290 LVVLFNVVTLAMAYLFAQHLERRIEEQRRHAELAATDALTGLANRRALDERLDAEWRRAA 349 Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAA 182 + LS++ D+D+FK ND +GHP GD + ++ + P R GGEEF Sbjct: 350 RERQPLSVLMIDVDHFKAYNDQYGHPDGDVALQAVARCIQANLRRPGDLAARYGGEEFCV 409 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYR 239 GS A ++A +R I+ I + + +T+S G A ++ +T+ Sbjct: 410 VLPGSDLGSANVVAETIRHAIQALDIPHARSDAAVLTVSIGAASGTPASGEQRTATLTKA 469 Query: 240 ADQALYVAKKSGRNRVVC 257 AD LY AK SGRNR V Sbjct: 470 ADAQLYRAKTSGRNRTVA 487 >gi|53715877|ref|YP_106612.1| GGDEF domain-containing protein [Burkholderia mallei ATCC 23344] gi|53723359|ref|YP_112344.1| hypothetical protein BPSS2342 [Burkholderia pseudomallei K96243] gi|67639151|ref|ZP_00438046.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4] gi|76817799|ref|YP_336650.1| GGDEF domain-containing protein [Burkholderia pseudomallei 1710b] gi|121597761|ref|YP_990732.1| diguanylate cyclase [Burkholderia mallei SAVP1] gi|124381784|ref|YP_001025215.1| diguanylate cyclase [Burkholderia mallei NCTC 10229] gi|126442656|ref|YP_001064270.1| diguanylate cyclase [Burkholderia pseudomallei 668] gi|126446548|ref|YP_001079570.1| diguanylate cyclase [Burkholderia mallei NCTC 10247] gi|126456856|ref|YP_001077194.1| diguanylate cyclase [Burkholderia pseudomallei 1106a] gi|134281915|ref|ZP_01768622.1| diguanylate cyclase [Burkholderia pseudomallei 305] gi|166998968|ref|ZP_02264818.1| diguanylate cyclase [Burkholderia mallei PRL-20] gi|167721876|ref|ZP_02405112.1| diguanylate cyclase [Burkholderia pseudomallei DM98] gi|167744411|ref|ZP_02417185.1| diguanylate cyclase [Burkholderia pseudomallei 14] gi|167821605|ref|ZP_02453285.1| diguanylate cyclase [Burkholderia pseudomallei 91] gi|167829949|ref|ZP_02461420.1| diguanylate cyclase [Burkholderia pseudomallei 9] gi|167851402|ref|ZP_02476910.1| diguanylate cyclase [Burkholderia pseudomallei B7210] gi|167900048|ref|ZP_02487449.1| diguanylate cyclase [Burkholderia pseudomallei 7894] gi|167924550|ref|ZP_02511641.1| diguanylate cyclase [Burkholderia pseudomallei BCC215] gi|226199207|ref|ZP_03794767.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9] gi|242312012|ref|ZP_04811029.1| diguanylate cyclase [Burkholderia pseudomallei 1106b] gi|254177165|ref|ZP_04883821.1| diguanylate cyclase [Burkholderia mallei ATCC 10399] gi|254182411|ref|ZP_04889005.1| diguanylate cyclase [Burkholderia pseudomallei 1655] gi|254186964|ref|ZP_04893479.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237] gi|254192528|ref|ZP_04898967.1| diguanylate cyclase [Burkholderia pseudomallei S13] gi|254203631|ref|ZP_04909992.1| diguanylate cyclase [Burkholderia mallei FMH] gi|254205499|ref|ZP_04911852.1| diguanylate cyclase [Burkholderia mallei JHU] gi|254263051|ref|ZP_04953916.1| diguanylate cyclase [Burkholderia pseudomallei 1710a] gi|254356215|ref|ZP_04972492.1| diguanylate cyclase [Burkholderia mallei 2002721280] gi|52213773|emb|CAH39828.1| hypothetical protein BPSS2342 [Burkholderia pseudomallei K96243] gi|52421847|gb|AAU45417.1| GGDEF domain protein [Burkholderia mallei ATCC 23344] gi|76582272|gb|ABA51746.1| GGDEF domain protein [Burkholderia pseudomallei 1710b] gi|121225559|gb|ABM49090.1| diguanylate cyclase [Burkholderia mallei SAVP1] gi|126222147|gb|ABN85652.1| diguanylate cyclase [Burkholderia pseudomallei 668] gi|126230624|gb|ABN94037.1| diguanylate cyclase [Burkholderia pseudomallei 1106a] gi|126239402|gb|ABO02514.1| diguanylate cyclase [Burkholderia mallei NCTC 10247] gi|134246977|gb|EBA47064.1| diguanylate cyclase [Burkholderia pseudomallei 305] gi|147745870|gb|EDK52949.1| diguanylate cyclase [Burkholderia mallei FMH] gi|147755085|gb|EDK62149.1| diguanylate cyclase [Burkholderia mallei JHU] gi|148025198|gb|EDK83367.1| diguanylate cyclase [Burkholderia mallei 2002721280] gi|157934647|gb|EDO90317.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237] gi|160698205|gb|EDP88175.1| diguanylate cyclase [Burkholderia mallei ATCC 10399] gi|169649286|gb|EDS81979.1| diguanylate cyclase [Burkholderia pseudomallei S13] gi|184212946|gb|EDU09989.1| diguanylate cyclase [Burkholderia pseudomallei 1655] gi|225928614|gb|EEH24641.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9] gi|238519695|gb|EEP83163.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4] gi|242135251|gb|EES21654.1| diguanylate cyclase [Burkholderia pseudomallei 1106b] gi|243064789|gb|EES46975.1| diguanylate cyclase [Burkholderia mallei PRL-20] gi|254214053|gb|EET03438.1| diguanylate cyclase [Burkholderia pseudomallei 1710a] gi|261826501|gb|ABM99648.2| diguanylate cyclase [Burkholderia mallei NCTC 10229] Length = 311 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 9/168 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + + D L+G+ N F S Y LS++ FD+D+FK IND FGH VG Sbjct: 144 KLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKTINDRFGHVVG 203 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ ++ V + GR GGEEFA +S EA ++A +R+ I ++ I + Sbjct: 204 DNVLRVMAQRVADVVRSQDTFGRFGGEEFALLLPCTSLDEAMLVAEKIRQTIGSTPIE-A 262 Query: 212 SGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258 G + +T S G A T++ AD ALY AK+ GRN V F Sbjct: 263 EGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310 >gi|149912251|ref|ZP_01900827.1| probable GGDEF family regulatory protein [Moritella sp. PE36] gi|149804672|gb|EDM64726.1| probable GGDEF family regulatory protein [Moritella sp. PE36] Length = 331 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 25/177 (14%) Query: 104 SRIDCLSGLLNHSAFISSL------GSYNEKLS---------IVFFDIDYFKQINDNFGH 148 +R+D L+ LLN F S L +NE+ + DID FKQ+ND FGH Sbjct: 145 NRLDPLTELLNRQTFESKLMEVIAGHDHNERREQSDEHCAWYLGMLDIDNFKQVNDQFGH 204 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--- 205 +GD+V+ ++ + F + ++ R GGEEF+ ++E A ++ LR +I Sbjct: 205 VIGDEVLILIARLIKTNFRSQDYIFRYGGEEFSVLFKCAAEDIAVLILERLRGMIAQYIF 264 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 Q+ ITIS G E +ST++ +AD ALY +K++GRN+V F IE Sbjct: 265 PQVGT-------ITISIGFTELESGRVLSTLVQQADVALYDSKRAGRNKVTNFKKIE 314 >gi|78486276|ref|YP_392201.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78364562|gb|ABB42527.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2] Length = 775 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 94/201 (46%), Gaps = 21/201 (10%) Query: 70 SLVIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 + I+ I LLLG + K+L + ++S LS D L+G+ N L Sbjct: 576 QMTIVLAPILLLLGVFAFFNRKLRQTQKKLQETNKQLSILSVTDHLTGVYNRQYLDQRLD 635 Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 S Y S++ D+D FK++ND FGH VGD+V+ + + GR G Sbjct: 636 SEVERVNRYGSTFSVIMMDLDNFKKVNDKFGHLVGDEVLVVFAQTVEKEIRKIDIFGRWG 695 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPIS 234 GEEF + A L +RK IE+ NIS T+S G+AE E I+ Sbjct: 696 GEEFILICPETPLTHAIQLGKKVRKSIESQDYPENISQ------TVSLGVAEYQTGEAIN 749 Query: 235 TIIYRADQALYVAKKSGRNRV 255 + RADQ LY AK+ GRN+V Sbjct: 750 DCLNRADQNLYKAKQLGRNQV 770 >gi|323498567|ref|ZP_08103560.1| hypothetical protein VISI1226_09849 [Vibrio sinaloensis DSM 21326] gi|323316456|gb|EGA69474.1| hypothetical protein VISI1226_09849 [Vibrio sinaloensis DSM 21326] Length = 597 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 4/160 (2%) Query: 100 ISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +++L+R D L+G+LN A ++ L N + D+D FKQ+ND GH +GD+++ Sbjct: 434 LTRLAREDSLTGVLNRRALVNGAEELRRLNASCCVCMMDLDDFKQVNDICGHAIGDEILI 493 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPS 215 + + +GRLGGEEFA +S +A +A +R +E+ + S + Sbjct: 494 AFCQAVNCEIRSSDVLGRLGGEEFALLLPETSLDDALQIAERIRLRVEHELAGKLCSSHA 553 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G+ + +P + + +AD LY AK +GRN++ Sbjct: 554 RPVTVSMGLVDWPKDQPFAQALIKADNCLYQAKHNGRNQI 593 >gi|290510614|ref|ZP_06549984.1| membrane-associated diguanylate cyclase [Klebsiella sp. 1_1_55] gi|289777330|gb|EFD85328.1| membrane-associated diguanylate cyclase [Klebsiella sp. 1_1_55] Length = 379 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R+ ++ D L+G N +AF++ L L+++ D+DYFK+ ND++GH GD Sbjct: 215 QRLESIANRDALTGTANRRALNAFLAQLWEQKAPLALIMIDVDYFKRYNDHYGHQAGDDC 274 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 ++ ++ L + V V R GGEEF A G S A ++A +++ I ++ + + +S Sbjct: 275 LSSVAQVLKMAVRAEDDLVARYGGEEFVVALPGVSLAHATVIAERIQQKIHDAALPHEAS 334 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S G+ P+ T+I RAD ALY AK GRN+ Sbjct: 335 AVAAVVTVSMGVVASDGTVPMETLIARADSALYQAKNKGRNQ 376 >gi|254489862|ref|ZP_05103057.1| GGDEF domain protein [Methylophaga thiooxidans DMS010] gi|224464947|gb|EEF81201.1| GGDEF domain protein [Methylophaga thiooxydans DMS010] Length = 317 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 94/172 (54%), Gaps = 10/172 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+G+LN A +S + +SI DID+FK+IND FGH GD Sbjct: 135 LEKLAYYDELTGVLNRRAGNASFQVEMDRAIRKEQNVSIAMVDIDHFKKINDAFGHQTGD 194 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ S L V R GGEEF A +++ EA+ L +R+ + +QI + Sbjct: 195 EVLRVFSRVLRQTMRPYDIVCRYGGEEFMLIAEINNKDEASDLFERVRETVSTTQIR-HA 253 Query: 213 GPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+IT S G+ + + +++ +AD+ALY AK +GRN+V+ +D++ Sbjct: 254 NQTINITASFGVHVVIPRTDMILKSLVQKADEALYEAKSAGRNKVIISADLD 305 >gi|209695594|ref|YP_002263523.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] gi|208009546|emb|CAQ79838.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] Length = 490 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 7/165 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGD 152 +S N L++ D ++GL N F SL K + F +DID FKQIND FGH VGD Sbjct: 326 LSQNYYRDLAKQDPMTGLYNRRGFEMSLQDRVVKKFVGFAIYDIDDFKQINDVFGHDVGD 385 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + I +++ L V R GGEEF S + + +RK I++S I S Sbjct: 386 EAIKYVARMLTKSVRDSDIVSRFGGEEFVICINADSRETLENVCERVRKSIQDSSGKIVS 445 Query: 213 GPSIHITISAGIA-ERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 G T+S G++ H++ II +AD LY AK+ G+NRV Sbjct: 446 GG---FTVSGGVSIIDSHQDFSFEHIIKKADDLLYKAKEDGKNRV 487 >gi|207739701|ref|YP_002258094.1| signal transduction protein ggdef domain [Ralstonia solanacearum IPO1609] gi|206593083|emb|CAQ59989.1| signal transduction protein ggdef domain [Ralstonia solanacearum IPO1609] Length = 460 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 11/198 (5%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 LV++ ++L + Y+ L+ R ++L+ D L+GL N A L + Sbjct: 263 LVVLFNVVTLAMAYLFAQHLERRIEEQRRHAELAATDALTGLANRRALDERLDAEWRRAA 322 Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAA 182 + LS++ D+D+FK ND +GHP GD + ++ + P R GGEEF Sbjct: 323 RERQPLSVLMIDVDHFKAYNDQYGHPDGDVALQAVARCIQANLRRPGDLAARYGGEEFCV 382 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYR 239 GS A ++A +R I+ I + + +T+S G A ++ +T+ Sbjct: 383 VLPGSDLGSANVVAETIRHAIQALDIPHARSDAAVLTVSIGAASGTPASGEQRTATLTKA 442 Query: 240 ADQALYVAKKSGRNRVVC 257 AD LY AK SGRNR V Sbjct: 443 ADAQLYRAKTSGRNRTVA 460 >gi|167566764|ref|ZP_02359680.1| two component system fusin protein [Burkholderia oklahomensis EO147] Length = 491 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+R D L+GL N AF +L + LS++F DID FK ND +GH G Sbjct: 319 RLQRLARTDALTGLGNRRAFDENLRREWARALRSSRPLSLLFVDIDQFKNYNDCYGHQAG 378 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D V+ ++ L + V V R GGEEF + + A+ +A LR+ + + I Sbjct: 379 DDVLREVARCLALNVRRAADDVSRYGGEEFVITLPDTDAKSASAIAEHLRRAVYDLDIEH 438 Query: 211 SSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255 P +T+S G+ H + + ++ AD ALY AK +GRNRV Sbjct: 439 EKSPYRRVTVSIGLVT-SHDNAMHSDTALVKMADAALYQAKSTGRNRV 485 >gi|313108490|ref|ZP_07794494.1| putative sensory box/GGDEF domain-containing protein [Pseudomonas aeruginosa 39016] gi|310880996|gb|EFQ39590.1| putative sensory box/GGDEF domain-containing protein [Pseudomonas aeruginosa 39016] Length = 307 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N A +LG E LS++ DID+FK++ND++GH VGD+ + ++ Sbjct: 150 DALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHTVGDEALKAVA 209 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + V R GGEEF + Q A ++ LR+ +E +G + ++ Sbjct: 210 ETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYR-HAGEPLKLS 268 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IS G A+ E ++ R D+ALY AK+ GRNR+ C Sbjct: 269 ISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 306 >gi|303246207|ref|ZP_07332488.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] gi|302492603|gb|EFL52474.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] Length = 427 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N + +L + L ++ FDID+FK +ND+ GH GD V+A L+ Sbjct: 274 DALTGIANRAGIDEALARERNRAARNAKPLCVIMFDIDHFKDVNDSLGHQAGDAVLAALT 333 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + +GR GGEEF A + ++ +LA LR +E + +T Sbjct: 334 GLVSGLVRGHDILGRYGGEEFLVVAPETDMEQGRLLAERLRAAVEAHAFPAAG----KVT 389 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+A E ++ RAD ALY AK++GRNRV Sbjct: 390 CSFGLAMLDADESAHALVARADAALYRAKETGRNRVA 426 >gi|300940085|ref|ZP_07154694.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] gi|300455097|gb|EFK18590.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] Length = 296 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNH----SAFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL +F L + + L ++ DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNADPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGIRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFSEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|256829500|ref|YP_003158228.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gi|256578676|gb|ACU89812.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] Length = 483 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 73/141 (51%), Gaps = 4/141 (2%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + ++LS++ D+DYFK IND +GH GD V+ + L F R GGEEF Sbjct: 340 HQDELSLMMIDLDYFKSINDTYGHQAGDMVLQEVGKILNNTLRESDFPARYGGEEFVVIL 399 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242 + E +A ILA LR I + S +T S GIA + C P T++ AD Sbjct: 400 PQTREDQAWILAERLRSQIGQTFFR-SQKKRFRVTASIGIAGIKPCALTPPETLLRNADT 458 Query: 243 ALYVAKKSGRNRVVCFSDIEN 263 ALY AK +GRN +VC S IE Sbjct: 459 ALYQAKTNGRN-MVCCSAIEE 478 >gi|157961509|ref|YP_001501543.1| response regulator receiver modulated diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157846509|gb|ABV87008.1| response regulator receiver modulated diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 400 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 8/150 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ + + +D L+ + N F ++ + LS+ DID+FK++ND++GH VG Sbjct: 248 RLWEQANLDYLTNVYNRRYFFNLYQEKLTEIAQKQGTLSLALLDIDFFKKVNDSYGHDVG 307 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ S++L F V R+GGEEF G + ++A L + R +E + I S Sbjct: 308 DEVLIEFSNRLQQSFSQHFNVARIGGEEFVVGFKGLNVEKAYALLDSFRMQLEANPIETS 367 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRAD 241 G ++I++S+G+AE H E + ++ RAD Sbjct: 368 KG-MLNISVSSGVAEFTHTENVDELLNRAD 396 >gi|254786722|ref|YP_003074151.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901] gi|237686025|gb|ACR13289.1| GGDEF domain protein [Teredinibacter turnerae T7901] Length = 566 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 8/172 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQIN 143 K L + ++ ++ D L+ L F L + NE+ L+++ DID FK IN Sbjct: 392 KSLEEASRKLFTIATTDHLTQLATRGYFFQRLNEEINRALNEQSSLALLELDIDNFKNIN 451 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+FGHP GD VI ++ + +GR+GGEEFA ++ A +AN LR+ Sbjct: 452 DSFGHPAGDAVIQHMAAICRECVRSNDIIGRIGGEEFAIGLPNCTKSAALEIANTLRRRC 511 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 N + S +I T S G+ ++ I ++ D+ALY AKK+GRNRV Sbjct: 512 ANEGLTYGS-KTIRFTCSIGVTLLNGRDNIQDLLGVVDKALYAAKKAGRNRV 562 >gi|254457171|ref|ZP_05070599.1| response regulator [Campylobacterales bacterium GD 1] gi|207085963|gb|EDZ63247.1| response regulator [Campylobacterales bacterium GD 1] Length = 683 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 95/171 (55%), Gaps = 11/171 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ LS D L+GLLN + I S ++ K+ ++F D+D FK++ND GH G Sbjct: 512 RLEHLSMTDKLTGLLNRNGLIENFEIFQKSAQRFDRKMGLMFIDLDGFKKVNDTLGHAAG 571 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ +SD+L + + R+GG+EF ++ L++ ++I+++ I +S Sbjct: 572 DEVLIIISDRLQSMSRSNEIAVRIGGDEF--VIFIPEYEDIDELSSLSQRILDSFSIPLS 629 Query: 212 -SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + I +S GIA ++E + I+ RAD+A+Y KKSG++ F+DI Sbjct: 630 IKDGEVSIGMSIGIATADNRETLDEILSRADEAMYKVKKSGKDG-YAFADI 679 >gi|116252627|ref|YP_768465.1| GGDEF domain-containing protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257275|emb|CAK08370.1| putative GGDEF domain and response regulator two component regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 443 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 11/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQIND 144 E ++ + D L+GL N F + NE L S+ DID+FK++ND Sbjct: 261 ETLAQMRQLRAAAACDYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLND 320 Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH +GDKV+ ++++L +F G+ + RLGGEEFA A L +++R I Sbjct: 321 TYGHEIGDKVLKAVANRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDI 380 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ + + +TIS GIAE E + ADQ LY+AK GRN+V +SD Sbjct: 381 SRLKVT-ADDEELGVTISIGIAEIAGYETFENYLNAADQFLYMAKHRGRNQV--YSD 434 >gi|91210783|ref|YP_540769.1| hypothetical protein UTI89_C1760 [Escherichia coli UTI89] gi|117623760|ref|YP_852673.1| hypothetical protein APECO1_658 [Escherichia coli APEC O1] gi|237705511|ref|ZP_04535992.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91072357|gb|ABE07238.1| hypothetical protein YdeH [Escherichia coli UTI89] gi|115512884|gb|ABJ00959.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|226900268|gb|EEH86527.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|323956736|gb|EGB52471.1| GGDEF domain-containing protein [Escherichia coli H263] Length = 298 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L ++ DID FK +ND +GH +GD V+ L+ L V R GGEEF ++ Sbjct: 161 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATN 220 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 ++EA + ++++N I S G I+IT++AG++ +EP+ +I RAD+A+Y K Sbjct: 221 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGK 279 Query: 249 KSGRNRVVCFSDIEN 263 ++GRNR + F D +N Sbjct: 280 QTGRNRCM-FIDEQN 293 >gi|26247818|ref|NP_753858.1| hypothetical protein c1963 [Escherichia coli CFT073] gi|26108220|gb|AAN80420.1|AE016760_279 Hypothetical protein ydeH [Escherichia coli CFT073] Length = 298 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L ++ DID FK +ND +GH +GD V+ L+ L V R GGEEF ++ Sbjct: 161 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATN 220 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 ++EA + ++++N I S G I+IT++AG++ +EP+ +I RAD+A+Y K Sbjct: 221 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGK 279 Query: 249 KSGRNRVVCFSDIEN 263 ++GRNR + F D +N Sbjct: 280 QTGRNRCM-FIDEQN 293 >gi|224372548|ref|YP_002606920.1| diguanylate cyclase [Nautilia profundicola AmH] gi|223589976|gb|ACM93712.1| diguanylate cyclase [Nautilia profundicola AmH] Length = 400 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 12/162 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ + +ID L+G N SL + NEK SIV DID+FK+IND +GH +GD+++ Sbjct: 247 KVKRQLQIDPLTGAYNRMFLEGSLENIFNINEKKSIVMIDIDHFKKINDTYGHQIGDEIL 306 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + + R GGEEF ++++EA I+ +RK N+ Sbjct: 307 IHFVNTIKNTIRKSDLLIRYGGEEFMLYMPDTTKEEAMIVMYKIRK-------NLRPCNG 359 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + SAGIA+ E ++ ++ AD+ LY AK GRN+++ Sbjct: 360 IKYSFSAGIADEG--ETLAEMVKIADRRLYKAKYEGRNKIIA 399 >gi|215486748|ref|YP_002329179.1| hypothetical protein E2348C_1656 [Escherichia coli O127:H6 str. E2348/69] gi|312966672|ref|ZP_07780892.1| uncharacterized protein ydeH [Escherichia coli 2362-75] gi|215264820|emb|CAS09204.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|281178642|dbj|BAI54972.1| conserved hypothetical protein [Escherichia coli SE15] gi|312288782|gb|EFR16682.1| uncharacterized protein ydeH [Escherichia coli 2362-75] gi|330911378|gb|EGH39888.1| hypothetical protein ECAA86_01735 [Escherichia coli AA86] Length = 296 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKATNDEEACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|152990443|ref|YP_001356165.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] gi|151422304|dbj|BAF69808.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] Length = 483 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 82/168 (48%), Gaps = 8/168 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFG 147 LK+ I + + + D L+ L N A S L + N + I+F DID+FK ND +G Sbjct: 319 LKQSHIYIDTLKDAALKDSLTHLFNRRALKSFLKTLKPNSRFGIIFCDIDHFKNFNDRYG 378 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+ ++ L F+ R GGEEF S ++ A +R+ IEN Sbjct: 379 HDKGDEVLQEVAKTLSKFVRKDDFLARWGGEEFLIVLPNISLEDLKNRAEKMRQAIENIS 438 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +I S +T+ + I I RAD+ALY AK+ GRNRV Sbjct: 439 KDIPVTCSFGVTVCEDASH------IDECIKRADEALYRAKEKGRNRV 480 >gi|114566146|ref|YP_753300.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337081|gb|ABI67929.1| response regulator receiver modulated diguanylate cyclase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 301 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ NH+ ++ L N L+++ D+D+FK++ND +GH GD V+ ++ Sbjct: 142 DLLTGIFNHAKILNILEKELYRAKRQNSNLAVIMGDLDHFKKVNDTYGHMAGDAVLVEVA 201 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ + R GGEEF G S +EA I+AN + I + +S P I +T Sbjct: 202 LRMKNTIRLYDSICRYGGEEFLLVLPGCSTEEAIIIANRILGSISQEPVVFNSTP-IAVT 260 Query: 220 ISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255 IS G+A + K + ++ AD ALY AK++GRNRV Sbjct: 261 ISLGVAMKAAGDKTTAAELVQLADAALYKAKQNGRNRV 298 >gi|254458947|ref|ZP_05072370.1| response regulator PleD [Campylobacterales bacterium GD 1] gi|207084218|gb|EDZ61507.1| response regulator PleD [Campylobacterales bacterium GD 1] Length = 424 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 11/157 (7%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+ + N + F I Y E LS+V DIDYFK IND +GH VGD +++ L Sbjct: 269 IDELTNIANRAKFNQILDIEIKKFKRYKENLSLVMLDIDYFKSINDTYGHQVGDIILSSL 328 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 S+ + R GGEEF + Q A A +R+ I+ +++I Sbjct: 329 SNLISSNIRDVDLFARWGGEEFVILLPNTDLQSAISFAEHIREYIQEYHFT----NNLNI 384 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T S GI+E K+ ++ R D ALY AK+ GRNRV Sbjct: 385 TCSFGISEINEKDTGENLLKRVDDALYRAKRMGRNRV 421 >gi|88608688|ref|YP_506396.1| response regulator PleD [Neorickettsia sennetsu str. Miyayama] gi|88600857|gb|ABD46325.1| response regulator/GGDEF domain protein [Neorickettsia sennetsu str. Miyayama] Length = 456 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 9/164 (5%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++ ID L+ L N F +++L S N+ S++ DIDYFK+IND GH GD Sbjct: 287 KMAVIDPLTSLYNRYYFEKYMDELLATLTKSQNKTFSLMMIDIDYFKKINDVCGHLSGDL 346 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISS 212 V+ L+ L V + GGEE + ++A A +RK +E ++ + I+ Sbjct: 347 VLKQLAACLKGCLRLNDLVAKFGGEEIVVVLVDVGLEDAFDTAERIRKTVEKTEFSTIND 406 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +T+S G++E ++ T+I RAD LY+AK+ GRNRVV Sbjct: 407 EVKVPLTVSIGVSEYQPQDTTKTLIGRADANLYIAKEKGRNRVV 450 >gi|109898237|ref|YP_661492.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109700518|gb|ABG40438.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 346 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 9/170 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF------ISSLGS-YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N +S+L + +N L++V FD+D FK IND GH VG Sbjct: 174 RLLSLAGTDPLTGLANRMKLNEGFQQLSALATRHNTPLTVVLFDLDLFKTINDVHGHSVG 233 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + ++ L + R GGEEFA + + ++ ++LRK + ++ + + Sbjct: 234 DDALRHVATFLRKNTRKTDLLARFGGEEFALIMVATPIEKGFTQVDELRKKLMSTPFS-T 292 Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I IT+SAG++ E ++ ++ +AD+ LY AK++GRN+V+ D Sbjct: 293 TKCDIKITLSAGLSTYGADGEDLNQLLNKADRRLYYAKENGRNQVIAHDD 342 >gi|288940345|ref|YP_003442585.1| diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288895717|gb|ADC61553.1| diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 499 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 11/175 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 + EL + + S D L+GL N L Y L+++ FD+D FK+I Sbjct: 307 ISELKAIQDELRAASFTDPLTGLYNRRYLYQRLAHEIDLANRYKHPLAVILFDLDLFKRI 366 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH VGD V+ +S L GR GGEEF + EA +A +R Sbjct: 367 NDTFGHGVGDDVLVCVSGTLKSCIREVDVAGRHGGEEFLVILPHADLTEATEVAERIRAS 426 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +QI+ S + TIS G+A+ C E + + AD+ LY+AK SGRNR++ Sbjct: 427 V--AQISWSV-EGLAATISGGVAQHC-GESLDAFLDVADRRLYMAKDSGRNRILA 477 >gi|225872196|ref|YP_002753651.1| sensory box-containing diguanylate cyclase [Acidobacterium capsulatum ATCC 51196] gi|225792180|gb|ACO32270.1| sensory box-containing diguanylate cyclase [Acidobacterium capsulatum ATCC 51196] Length = 627 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 10/180 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 + + +Y + L+ ID L+G+ N F L + ++ +++ D+D+FK N Sbjct: 432 ERMQTAYLELQALAEIDALTGVANRRHFDKVLDAEWKRAIRTGAPTALLLIDVDWFKNYN 491 Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD + ++ + V + + V R GGEEFA + E AA L +R+ Sbjct: 492 DIYGHLEGDVCLRSIATWISVCIHRSTDLVARFGGEEFALILPDTDEAGAAALGERIREE 551 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSD 260 IE ++ HITISAG A S +I AD+ALY AK SGRNRV+ SD Sbjct: 552 IEARKVVHRGNEYGHITISAGCASLMPMRGTSGTLLIDAADKALYRAKSSGRNRVMRASD 611 >gi|82776861|ref|YP_403210.1| hypothetical protein SDY_1590 [Shigella dysenteriae Sd197] gi|309788737|ref|ZP_07683333.1| uncharacterized protein ydeH [Shigella dysenteriae 1617] gi|81241009|gb|ABB61719.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308923371|gb|EFP68882.1| uncharacterized protein ydeH [Shigella dysenteriae 1617] Length = 296 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I+ S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAISHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|325272232|ref|ZP_08138652.1| diguanylate cyclase [Pseudomonas sp. TJI-51] gi|324102638|gb|EGC00065.1| diguanylate cyclase [Pseudomonas sp. TJI-51] Length = 473 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 20/170 (11%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE--------KLSIVFFDIDYFKQINDNFGHPV 150 R++ + ID L+G L+ SAF + + L+++ DID+FK IND GH V Sbjct: 297 RLAHQATIDHLTGALSRSAFTRRANALLDSRQHAQALPLTLMMLDIDHFKSINDAHGHAV 356 Query: 151 GDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD+V+ L DQL +F RLGGEEF G + + A A LR+ +++ Sbjct: 357 GDQVLRQFAGALQDQL---HNNELF-ARLGGEEFVVVMPGLAPERATFTAERLRRAVQDL 412 Query: 207 QINISSGPSIHITISAGIA--ERCHKEP-ISTIIYRADQALYVAKKSGRN 253 + + + IT+S G+A E P + ++ ADQALY AK GRN Sbjct: 413 HV-VQDDKCLQITVSIGVAGCEAHMPSPSLDLLLASADQALYRAKAHGRN 461 >gi|307721441|ref|YP_003892581.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306979534|gb|ADN09569.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 615 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 8/169 (4%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ S D ++GL N F S N S++ D+D+FK++ND +GH +G Sbjct: 437 KLRDTSLRDAMTGLYNRRFLEEFIDTFASQAKRENTTYSVMMLDVDFFKKVNDTYGHDIG 496 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKVIA + + L R GGEEF ++++ +A+ + ++ Sbjct: 497 DKVIAKIGEVLHNSIRESDLAIRYGGEEFVVLLHNATDEGTQKIASKIHSEFAKLTFDVG 556 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 +G +I T+S GIA+ + I I AD ALYVAK +GRN++V ++ Sbjct: 557 NGKTIQKTMSIGIAKFPRDGDSIWKCIKYADTALYVAKTTGRNKIVEYT 605 >gi|293414888|ref|ZP_06657531.1| ydeH protein [Escherichia coli B185] gi|291432536|gb|EFF05515.1| ydeH protein [Escherichia coli B185] Length = 296 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I+ S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAISHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|262044987|ref|ZP_06018029.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330006974|ref|ZP_08305822.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] gi|259037714|gb|EEW38943.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535592|gb|EGF62046.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] Length = 269 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 22/264 (8%) Query: 11 IWLCH--EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68 +W H K + PH + ++ +FI T+ F NI F + P + I+ E Sbjct: 2 LWAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLACLIMAEG 61 Query: 69 ---------LSLVIISITISLLLGYISGS----ILKELFISYNRISQLSRIDCLSGLLNH 115 L I IT+ ++ S + ++ +L N ++ LS +D L+GL N Sbjct: 62 EQWLRMTYCFMLPIAGITLQNIIQKRSDAFTQGLMDKLMHERNTLNDLSMLDPLTGLYNR 121 Query: 116 SAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 + L + + ++ DID+FK ND++GH +GD+ + +S + + Sbjct: 122 RGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRNAVRSRDI 181 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITISAGIAERCH 229 V R GGEEF SSE+ A A +R+ + + +I + + ++TIS G+ + Sbjct: 182 VARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHMFNESVATNVTISIGLTPLIN 241 Query: 230 KEPISTIIYRADQALYVAKKSGRN 253 + I + RAD ALY AK GRN Sbjct: 242 -DNIEQALARADGALYEAKNKGRN 264 >gi|157962568|ref|YP_001502602.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157847568|gb|ABV88067.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 261 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 30/270 (11%) Query: 3 RSLKDFLSIWLCHE-KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL 61 RS + +L + H +NL + S+ FS+FI + F L G Y + Sbjct: 6 RSARRYLVQRMRHIIQNLGRLKVVLLITALSVSFSVFITFLAF----SLRQTG--AVYNI 59 Query: 62 EYILVENLSLVIISIT----ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 + L + L I I ISLL+ S+ KE+ + L+ +D L+ LLN A Sbjct: 60 AFFLATFIPLTIAPIVSWPLISLLMKV--DSLEKEMRL-------LASLDPLTELLNRRA 110 Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 F Y + LS++ D+D FK IND +GH GD V+ S + T Sbjct: 111 FFRDAELYIHRAKQEGRMLSVIALDLDKFKAINDCYGHSAGDAVLRHFSTTIRANCRTSD 170 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 +GRLGGEEFA +S A LA L + + + I ++ T+S G+ + Sbjct: 171 LMGRLGGEEFALLLPNTSASAAYALAERLHQALRLTAIQYGHS-TMRYTVSIGVISVVPQ 229 Query: 231 EP--ISTIIYRADQALYVAKKSGRNRVVCF 258 + I ++ +AD++LY+AK++GRN V F Sbjct: 230 KTDNIEALLNKADRSLYLAKETGRNCTVVF 259 >gi|49083990|gb|AAT51164.1| PA3177 [synthetic construct] Length = 308 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N A +LG E LS++ DID+FK++ND++GH VGD+ + ++ Sbjct: 150 DALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHAVGDEALKAVA 209 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + V R GGEEF + Q A ++ LR+ +E +G + ++ Sbjct: 210 ETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYR-HAGEPLKLS 268 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IS G A+ E ++ R D+ALY AK+ GRNR+ C Sbjct: 269 ISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 306 >gi|15598373|ref|NP_251867.1| hypothetical protein PA3177 [Pseudomonas aeruginosa PAO1] gi|107102707|ref|ZP_01366625.1| hypothetical protein PaerPA_01003773 [Pseudomonas aeruginosa PACS2] gi|116051166|ref|YP_790003.1| sensory box GGDEF domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218890631|ref|YP_002439495.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa LESB58] gi|254236139|ref|ZP_04929462.1| hypothetical protein PACG_02103 [Pseudomonas aeruginosa C3719] gi|254241864|ref|ZP_04935186.1| hypothetical protein PA2G_02585 [Pseudomonas aeruginosa 2192] gi|9949295|gb|AAG06565.1|AE004742_1 hypothetical protein PA3177 [Pseudomonas aeruginosa PAO1] gi|115586387|gb|ABJ12402.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126168070|gb|EAZ53581.1| hypothetical protein PACG_02103 [Pseudomonas aeruginosa C3719] gi|126195242|gb|EAZ59305.1| hypothetical protein PA2G_02585 [Pseudomonas aeruginosa 2192] gi|218770854|emb|CAW26619.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa LESB58] Length = 307 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N A +LG E LS++ DID+FK++ND++GH VGD+ + ++ Sbjct: 150 DALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHAVGDEALKAVA 209 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + V R GGEEF + Q A ++ LR+ +E +G + ++ Sbjct: 210 ETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYR-HAGEPLKLS 268 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IS G A+ E ++ R D+ALY AK+ GRNR+ C Sbjct: 269 ISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 306 >gi|300313032|ref|YP_003777124.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gi|300075817|gb|ADJ65216.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 89/179 (49%), Gaps = 11/179 (6%) Query: 86 SGSILKELFISYNRISQLS-------RIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDI 136 S +EL R+ QLS R D L+G LN A +K +S+V DI Sbjct: 56 SDRTERELNQLNARLQQLSDELDYKARHDNLTGALNRGAVFERAHQVLQKSPMSLVVLDI 115 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND FGHP GD VI L +L +GR+GGEEF G + + A +LA Sbjct: 116 DFFKRINDEFGHPTGDAVIRELVARLRTTVDGVGVIGRVGGEEFTILLPGMALEPAVVLA 175 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R+ I + P+ +T S G+A RADQALY AK+SGRNRV Sbjct: 176 GRIRQAIAGERFGCL--PARPVTSSFGVAWATAGSDFEQAYARADQALYQAKRSGRNRV 232 >gi|237755618|ref|ZP_04584232.1| ggdef domain protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237692213|gb|EEP61207.1| ggdef domain protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 411 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 20/202 (9%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 Y ++ N+ ++I I L Y++ +K S++S ID L+G N +F + + Sbjct: 223 YFMILNIQNIVIWIGNEFL--YLNTKFIK---------SEMS-IDPLTGAFNRRSFETII 270 Query: 123 GSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 E +++ D+DYFK+IND FGH GD+ + + + +V R+ Sbjct: 271 QKLLEISQITDAPITLAMADLDYFKKINDTFGHLTGDEALKHFVNIIKRNLRKSDYVFRI 330 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 GGEEF + ++A + +RK +E + + G I IT S G+AE + I+ Sbjct: 331 GGEEFLILLPNTELKDAVEIVERIRKDLEENPLYFD-GKEIKITASFGLAEVDKNKYINE 389 Query: 236 IIYRADQALYVAKKSGRNRVVC 257 II AD+ LY AK+ GRNRVV Sbjct: 390 IIKEADEKLYKAKELGRNRVVV 411 >gi|159897975|ref|YP_001544222.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] gi|159891014|gb|ABX04094.1| diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] Length = 1774 Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 9/167 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 + ++ +L+ D L+ + N F S + LS + D+D+FK++ND++GH Sbjct: 1606 FGQVQRLAITDSLTQVSNRRHFFELAERQWILTCSSDHPLSAMMLDVDHFKRVNDSYGHS 1665 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD V+ ++D +GR GGEEFA + A +A LR I N IN Sbjct: 1666 VGDLVLRTVADLCRANLRPSDLLGRYGGEEFAILLPDTDVSAALTIAERLRVAIANHVIN 1725 Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 SI++T+S G+ + +++++ RAD+ LY+AK++GR+RV Sbjct: 1726 HEQA-SINLTVSIGVTGLSKDDNSVASLLDRADRGLYIAKETGRDRV 1771 >gi|110641699|ref|YP_669429.1| hypothetical protein ECP_1521 [Escherichia coli 536] gi|191174140|ref|ZP_03035653.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11] gi|300978589|ref|ZP_07174335.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1] gi|300989311|ref|ZP_07178930.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1] gi|301050200|ref|ZP_07197094.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1] gi|331657535|ref|ZP_08358497.1| putative GGDEF domain protein [Escherichia coli TA206] gi|110343291|gb|ABG69528.1| hypothetical protein YdeH [Escherichia coli 536] gi|190905558|gb|EDV65184.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11] gi|300298090|gb|EFJ54475.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1] gi|300308135|gb|EFJ62655.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1] gi|300407360|gb|EFJ90898.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1] gi|315291875|gb|EFU51227.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1] gi|320195527|gb|EFW70152.1| hypothetical protein EcoM_01952 [Escherichia coli WV_060327] gi|323187195|gb|EFZ72509.1| hypothetical protein ECRN5871_4578 [Escherichia coli RN587/1] gi|324006909|gb|EGB76128.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2] gi|324014811|gb|EGB84030.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1] gi|331055783|gb|EGI27792.1| putative GGDEF domain protein [Escherichia coli TA206] Length = 296 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L ++ DID FK +ND +GH +GD V+ L+ L V R GGEEF ++ Sbjct: 159 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATN 218 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 ++EA + ++++N I S G I+IT++AG++ +EP+ +I RAD+A+Y K Sbjct: 219 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGK 277 Query: 249 KSGRNRVVCFSDIEN 263 ++GRNR + F D +N Sbjct: 278 QTGRNRCM-FIDEQN 291 >gi|296388339|ref|ZP_06877814.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa PAb1] Length = 307 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N A +LG E LS++ DID+FK++ND++GH VGD+ + ++ Sbjct: 150 DALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHTVGDEALKAVA 209 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + V R GGEEF + Q A ++ LR+ +E +G + ++ Sbjct: 210 ETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYR-HAGEPLKLS 268 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IS G A+ E ++ R D+ALY AK+ GRNR+ C Sbjct: 269 ISLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRC 306 >gi|162450035|ref|YP_001612402.1| FHA/GGDEF domain-containing protein [Sorangium cellulosum 'So ce 56'] gi|161160617|emb|CAN91922.1| FHA and GGDEF domain protein [Sorangium cellulosum 'So ce 56'] Length = 310 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 14/161 (8%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ N F+ L + + LS++ FD+D+FK+IND FGH GD V+A ++ Sbjct: 146 DALTKAFNKKYFLDRLETEVSYARRHGAHLSLLMFDVDHFKRINDTFGHLAGDYVLARIA 205 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 T R GGEEF G + A IL LR +IE S G + T Sbjct: 206 KIASHTVRTEDVFARYGGEEFGILCRGVGLENAGILGERLRLLIEGSVFE-HEGVRMPTT 264 Query: 220 ISAGIAERCHKE-PIST---IIYRADQALYVAKKSGRNRVV 256 IS G+A H E + T +I AD+ALY AK++GRNRV+ Sbjct: 265 ISVGVA--AHPELAVQTGMELIAAADEALYEAKRTGRNRVL 303 >gi|271502301|ref|YP_003335327.1| hemerythrin-like metal-binding domain-containing diguanylate cyclase [Dickeya dadantii Ech586] gi|270345856|gb|ACZ78621.1| diguanylate cyclase with hemerythrin-like metal-binding domain protein [Dickeya dadantii Ech586] Length = 521 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 108/210 (51%), Gaps = 12/210 (5%) Query: 64 ILVENLSLVIISI-TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH------- 115 +L + +L II++ +++ LL +G I+ S + S + R D L+G N Sbjct: 178 LLASSPALTIINVASLATLLFIANGLIMMTKDRSDHLNSLMLRQDNLTGCWNRIRVQEIA 237 Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 + L Y +S++ FD+D+FK++ND++GH GD+V+ + T +GR Sbjct: 238 RQEMDRLERYGYPVSLLMFDLDHFKKVNDDYGHATGDEVLKAFAYIARTTLRTTDVLGRW 297 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 GGEEF A + A + A +R+ +E+ + S G + +T S GIA + + Sbjct: 298 GGEEFVAILPSTGIGGAILTAERIRQALESQR--FSHG--LQVTTSIGIAVCQSTDHWES 353 Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + RAD ALY AK +GRNRV + I +N+ Sbjct: 354 WLSRADSALYRAKAAGRNRVETEALIVDNS 383 >gi|239787440|emb|CAX83912.1| Diguanylate cyclase [uncultured bacterium] Length = 342 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 9/171 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 E ++Y + +R D L+GL+N F ++ + + L++ D+D+FK IND Sbjct: 172 ERALAYEDLYDQARRDALTGLVNRRVFEERADVEMAHAQRHKQPLTLACLDLDFFKVIND 231 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+ + +S + R+GG+EFA +S + AA+L L K + Sbjct: 232 RLGHAEGDQALKTVSQTFTKTVRDSDLLARVGGDEFAMILPNTSLENAALLMERLCKAVR 291 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IS+ S + +S GIA ++ + + RAD ALY AK++GR++V Sbjct: 292 --ALQISAPDSAPLGVSVGIASWNTEDSLESWWQRADAALYRAKEAGRSQV 340 >gi|171318964|ref|ZP_02908093.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] gi|171095807|gb|EDT40757.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] Length = 510 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 12/186 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 L+ ++ +++ +L+ D L+GL N F + L ++ LS++F D+D+FK Sbjct: 326 LRRRQLAESKLYRLAHTDSLTGLDNRGTFDAVLAKEAQRASRSGRPLSVLFVDVDHFKAF 385 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD V+ ++ V R GGEEF + + AA +A +R+ Sbjct: 386 NDYYGHLAGDDVLRRIAQTASRCLRRDSDHVARYGGEEFVVTLPDTDARGAATVAEAIRR 445 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260 I I P H+T S G A + + R AD+ALY AK GRNRV SD Sbjct: 446 AIAGLDIAHGRSPYGHVTTSIGTATATGGRVNAAALLRLADEALYRAKSGGRNRV---SD 502 Query: 261 IENNTC 266 E +T Sbjct: 503 AEASTA 508 >gi|157803455|ref|YP_001492004.1| response regulator PleD [Rickettsia canadensis str. McKiel] gi|157784718|gb|ABV73219.1| response regulator PleD [Rickettsia canadensis str. McKiel] Length = 450 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 8/162 (4%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ DCL+GL N F I + KL ++ DID FK +ND +GH GDK++ Sbjct: 287 LAAKDCLTGLFNRRYFDIHLKQMIEKANKESIKLYLLMCDIDNFKYVNDTYGHQAGDKIL 346 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214 +S L + R GGEEF +A A +R IE +I Sbjct: 347 TIVSRILKNNLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMDFHIEDQIE 406 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + TIS G+ E +E I + I RAD A+Y AK++G+N+VV Sbjct: 407 PLKKTISIGVTEYKKEESIESFIARADNAMYEAKRTGKNKVV 448 >gi|91782447|ref|YP_557653.1| diguanylate cyclase [Burkholderia xenovorans LB400] gi|91686401|gb|ABE29601.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 563 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 27/183 (14%) Query: 90 LKELFISYNRI-SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141 L E S N + S +R D L+G L+ F+ L NE L + D+D+FKQ Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRREIERAHLGNEPLCMAIADLDHFKQ 431 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-- 199 IND FGH GD+ + D +GRLGGEEF + A DL Sbjct: 432 INDRFGHAAGDRALEHFVDTCRAELRGADAIGRLGGEEFG----------LLLPATDLAG 481 Query: 200 -RKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 R+++E ++ + + P S+ +++S GI E + I+ RAD ALY AK GR Sbjct: 482 GREVVERLRLRLKAMPSPKLPASVGLSVSIGITELSADDLPERIMSRADTALYAAKSGGR 541 Query: 253 NRV 255 +R Sbjct: 542 DRT 544 >gi|39936195|ref|NP_948471.1| response regulator PleD [Rhodopseudomonas palustris CGA009] gi|192291911|ref|YP_001992516.1| response regulator PleD [Rhodopseudomonas palustris TIE-1] gi|39650050|emb|CAE28573.1| putative diguanylate cyclase (GGDEF) with response regulator receiver domain [Rhodopseudomonas palustris CGA009] gi|192285660|gb|ACF02041.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 457 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 81/162 (50%), Gaps = 9/162 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N S L G+ + L+++ DID+FK IND++GH GD V+ + Sbjct: 295 DGLTGLHNRRYMESHLATLAEQAGARGKPLALMILDIDFFKSINDSYGHDAGDDVLREFA 354 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 ++ R GGEEF + A ++A LR+ I I G I + Sbjct: 355 LRIKKSIRGIDLACRYGGEEFVIVMPETDLHVAQMVAERLRRAIAGEPFAIEKGTRRIEV 414 Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 TIS G++ K EPI ++ RAD ALY AK GRNRVV + Sbjct: 415 TISIGLSTLERKGEPIPDLLKRADTALYRAKHDGRNRVVAAA 456 >gi|307609050|emb|CBW98481.1| hypothetical protein LPW_03181 [Legionella pneumophila 130b] Length = 709 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 70/134 (52%), Gaps = 3/134 (2%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +I+ D+D+FK+IND FGH GD V+ L L R GGEEF Sbjct: 575 AILMLDLDHFKKINDTFGHDAGDLVLKELGQILNSDIRLGDIAARYGGEEFVLLLYDIDA 634 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A + A +LR I N Q+ + P IT S GI+ K P + +I AD+ALY A Sbjct: 635 QAAKMKAENLRSAISNLQVKYGAQPVGQITASIGISVYPDDAKSP-AEVIEAADKALYQA 693 Query: 248 KKSGRNRVVCFSDI 261 K GRN+V+ FS+I Sbjct: 694 KNKGRNKVILFSEI 707 >gi|117624095|ref|YP_853008.1| hypothetical protein APECO1_994 [Escherichia coli APEC O1] gi|218558812|ref|YP_002391725.1| diguanylate cyclase [Escherichia coli S88] gi|115513219|gb|ABJ01294.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218365581|emb|CAR03308.1| putative diguanylate cyclase [Escherichia coli S88] Length = 564 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 551 KQAGRNR-VCASD 562 >gi|193064273|ref|ZP_03045356.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22] gi|194425773|ref|ZP_03058329.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171] gi|260843844|ref|YP_003221622.1| hypothetical protein ECO103_1673 [Escherichia coli O103:H2 str. 12009] gi|192929121|gb|EDV82732.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22] gi|194415828|gb|EDX32094.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171] gi|257758991|dbj|BAI30488.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|323163359|gb|EFZ49186.1| hypothetical protein ECE128010_0436 [Escherichia coli E128010] Length = 296 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|16129494|ref|NP_416052.1| diguanylate cyclase, required for pgaD induction [Escherichia coli str. K-12 substr. MG1655] gi|89108376|ref|AP_002156.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|157158898|ref|YP_001462827.1| hypothetical protein EcE24377A_1744 [Escherichia coli E24377A] gi|170081202|ref|YP_001730522.1| hypothetical protein ECDH10B_1666 [Escherichia coli str. K-12 substr. DH10B] gi|238900756|ref|YP_002926552.1| hypothetical protein BWG_1355 [Escherichia coli BW2952] gi|256018237|ref|ZP_05432102.1| hypothetical protein ShiD9_04932 [Shigella sp. D9] gi|256022785|ref|ZP_05436650.1| hypothetical protein E4_05399 [Escherichia sp. 4_1_40B] gi|293445945|ref|ZP_06662367.1| hypothetical protein ECCG_00091 [Escherichia coli B088] gi|300951017|ref|ZP_07164890.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1] gi|300959026|ref|ZP_07171122.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1] gi|301029209|ref|ZP_07192322.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1] gi|301644661|ref|ZP_07244645.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] gi|307138186|ref|ZP_07497542.1| hypothetical protein EcolH7_08661 [Escherichia coli H736] gi|307310919|ref|ZP_07590565.1| diguanylate cyclase [Escherichia coli W] gi|331667947|ref|ZP_08368804.1| putative GGDEF domain protein [Escherichia coli TA271] gi|332279288|ref|ZP_08391701.1| conserved hypothetical protein [Shigella sp. D9] gi|2851425|sp|P31129|YDEH_ECOLI RecName: Full=Diguanylate cyclase YdeH; Short=DGC gi|1787816|gb|AAC74608.1| diguanylate cyclase, required for pgaD induction [Escherichia coli str. K-12 substr. MG1655] gi|85675013|dbj|BAA18882.2| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|157080928|gb|ABV20636.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E24377A] gi|169889037|gb|ACB02744.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|238860312|gb|ACR62310.1| conserved protein [Escherichia coli BW2952] gi|260449343|gb|ACX39765.1| diguanylate cyclase [Escherichia coli DH1] gi|291322775|gb|EFE62203.1| hypothetical protein ECCG_00091 [Escherichia coli B088] gi|299877845|gb|EFI86056.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1] gi|300314321|gb|EFJ64105.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1] gi|300449692|gb|EFK13312.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1] gi|301077027|gb|EFK91833.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] gi|306909097|gb|EFN39593.1| diguanylate cyclase [Escherichia coli W] gi|315060816|gb|ADT75143.1| conserved protein [Escherichia coli W] gi|315136175|dbj|BAJ43334.1| hypothetical protein ECDH1ME8569_1478 [Escherichia coli DH1] gi|323378616|gb|ADX50884.1| diguanylate cyclase [Escherichia coli KO11] gi|324020237|gb|EGB89456.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3] gi|331064911|gb|EGI36813.1| putative GGDEF domain protein [Escherichia coli TA271] gi|332101640|gb|EGJ04986.1| conserved hypothetical protein [Shigella sp. D9] Length = 296 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|293605320|ref|ZP_06687705.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553] gi|292816259|gb|EFF75355.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553] Length = 382 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 125/252 (49%), Gaps = 17/252 (6%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70 +W C + L++ +P F++ + ++F A F A + + + L YG L + Sbjct: 138 MWRC--EPLKALAPRRFVVAITGIHALFYA---FRALLLPWLVSL---YGASAQLAASNI 189 Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYN 126 + + S+LL +++E ++ ++ + S+ D L+ L N F L ++ Sbjct: 190 TMYEGVLYSVLLPMALLKLVRE--EAHGQLVRESQTDYLTRLGNRRWFFEEGARLLRAHG 247 Query: 127 EK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + ++++ FD+D+FK IND GH GD+V+ +D V G + + R+GGEEFAA Sbjct: 248 AQGPVAVLAFDLDHFKSINDRHGHQTGDQVLKVFADIAQEVAGPNVLLARIGGEEFAALL 307 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243 +G + ++A L + + + + I T+S G+A + P++ + AD+A Sbjct: 308 MGDAARQAQSLGESVARRFAGTASERADRSEIRATVSIGLARFDDNAPPLADSLAAADRA 367 Query: 244 LYVAKKSGRNRV 255 LY AK G NR+ Sbjct: 368 LYRAKSLGGNRL 379 >gi|188581430|ref|YP_001924875.1| diguanylate cyclase [Methylobacterium populi BJ001] gi|179344928|gb|ACB80340.1| diguanylate cyclase [Methylobacterium populi BJ001] Length = 406 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 13/177 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + R LS+ D L+GL N A L ++ ++++ DID+FK+ ND+ GHP GD Sbjct: 221 ARQRFQDLSQTDALTGLPNRRALDLCLDAWLSNGGSVAMLMIDIDHFKRFNDSLGHPEGD 280 Query: 153 KVIAFLSDQLVV-VFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + +++ L F R GGEEFA + EAA LA+DL + + + Sbjct: 281 ICLRRVAETLAASTFAREDCLCARYGGEEFAVVLKEAGRAEAARLADDLVRAVAALGLRH 340 Query: 211 SSGPSIH--ITISAGIAERC------HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ +T S G+A ++P + ++ AD+ALY+AK+ GRNR V + Sbjct: 341 PGRRDMYRIVTASIGVASTEPAGAGFREDPKAALVTMADRALYMAKQGGRNRAVVYD 397 >gi|117920851|ref|YP_870043.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117613183|gb|ABK48637.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 341 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 6/160 (3%) Query: 107 DCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G LN AF + L E ++ DID+FK NDN+GH +GD+V+ +S +L Sbjct: 182 DALTGCLNRRAFDADLAGMLAQAPEGTCLILVDIDHFKAFNDNYGHQLGDQVLKAVSKRL 241 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITI 220 + R GGEEFA S + A LA +R+ +E + +IT Sbjct: 242 QEACRDGCKLYRFGGEEFAIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDQRIDNITA 301 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S G+A+ K+ +I RAD LY AK+ GRNRV+ S+ Sbjct: 302 SFGVAQWQEKQVAIHLIERADMLLYEAKRLGRNRVMPMSN 341 >gi|256823494|ref|YP_003147457.1| diguanylate cyclase [Kangiella koreensis DSM 16069] gi|256797033|gb|ACV27689.1| diguanylate cyclase [Kangiella koreensis DSM 16069] Length = 700 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 11/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISS------LGSYNEK-LSIVFFDIDYFKQIND 144 EL R+ ++S D L+ + N F ++ L N L+ DID+FK++ND Sbjct: 523 ELIAMNERLEKMSVEDELTKIYNRRGFEAAANEAFKLACRNRTALTFAMLDIDHFKRVND 582 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH VGD+ I ++ +L VF F R GGEEF G + + + LRK I Sbjct: 583 TWGHVVGDECIVMVAKELKKVFLRETDFYARYGGEEFVVLLTGGNTDKHCRMLEQLRKDI 642 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 EN ++ + G +I +T+S G+ IS ++ +AD+ LY +K GRNR+ Sbjct: 643 ENHKVAV-DGENISLTVSIGVFSLKEDFNISYHQLVSKADKLLYQSKTEGRNRI 695 >gi|307944421|ref|ZP_07659761.1| diguanylate cyclase [Roseibium sp. TrichSKD4] gi|307772170|gb|EFO31391.1| diguanylate cyclase [Roseibium sp. TrichSKD4] Length = 723 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 12/170 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ Q++ D L+ + N AF I+ S++ D+D+FK+INDNFGH VG Sbjct: 548 RLEQIASTDDLTKIFNRRAFFKLAARDIARFRRTGTTFSVLMIDVDHFKKINDNFGHAVG 607 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINI 210 D V+ +D + GR+GGEEF + + A ++A LR+ IE N ++ Sbjct: 608 DAVLKKFADIIAPSLRAVDIFGRIGGEEFCVILHNTGVENALLVAERLREEIEVNCMVSP 667 Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 P T S GI+E + ++I+ RAD ALY +K +GRN+ S Sbjct: 668 MQKPP---TCSIGISEISATDVEFTSILQRADAALYQSKHTGRNKSTIHS 714 >gi|209549745|ref|YP_002281662.1| response regulator receiver modulated diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535501|gb|ACI55436.1| response regulator receiver modulated diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 443 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 91/177 (51%), Gaps = 11/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQIND 144 E ++ + D L+GL N F + NE L S+ DID+FK++ND Sbjct: 261 ETLAQMRQLRAAAACDYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLND 320 Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH +GDKV+ ++++L +F G+ + RLGGEEFA A L +++R I Sbjct: 321 TYGHEIGDKVLKAVANRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDI 380 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ + + +TIS GIAE E + ADQ LY+AK GRN+V FSD Sbjct: 381 SRLKV-TADDEELGVTISIGIAEIEGYETFENYLNAADQFLYMAKHRGRNQV--FSD 434 >gi|91211175|ref|YP_541161.1| hypothetical protein UTI89_C2157 [Escherichia coli UTI89] gi|114154897|sp|Q1RAI4|YEDQ_ECOUT RecName: Full=Cellulose synthesis regulatory protein gi|91072749|gb|ABE07630.1| hypothetical protein UTI89_C2157 [Escherichia coli UTI89] Length = 569 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 376 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 435 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 436 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 495 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 496 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 555 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 556 KQAGRNR-VCASD 567 >gi|331663040|ref|ZP_08363950.1| putative GGDEF domain protein [Escherichia coli TA143] gi|331058839|gb|EGI30816.1| putative GGDEF domain protein [Escherichia coli TA143] Length = 296 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|294102208|ref|YP_003554066.1| diguanylate cyclase [Aminobacterium colombiense DSM 12261] gi|293617188|gb|ADE57342.1| diguanylate cyclase [Aminobacterium colombiense DSM 12261] Length = 366 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 22/234 (9%) Query: 39 IATVIFIANIF----LFYIGLTPFYGLEYILVENLSLVIISIT--ISLLLG---YISGSI 89 I +++ IA+ F LFY+ +IL+ ++VI I IS L ++ G I Sbjct: 138 ILSILLIAHGFFVGTLFYVQSNTSVIQNHILISTGAVVIAFIVSRISFQLKTRTFLDGKI 197 Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 ++E + LS D ++GL NH L Y+ LS+ FD+D FK + Sbjct: 198 IEE---QLETLKDLSIRDSMTGLYNHKHICQRLEEEIRRAFRYDSPLSVGIFDLDGFKNV 254 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH GD VI ++ +++ F +GR GG+EF ++ + A + RK Sbjct: 255 NDTFGHQEGDVVILRVAQTMILTFRNTDILGRYGGDEFLVILPETNLESAVTCSERFRK- 313 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 N + + ++IS G+A + ++I RAD LY AKK G+N +V Sbjct: 314 --NLLERLQGTRNDLLSISGGVATLKKDDSAQSLIQRADTLLYEAKKLGKNTIV 365 >gi|294140101|ref|YP_003556079.1| response regulator [Shewanella violacea DSS12] gi|293326570|dbj|BAJ01301.1| response regulator [Shewanella violacea DSS12] Length = 306 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 13/171 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 +++ ++ D L+ L N I S S + LS++ DID+FK IND FGH V Sbjct: 129 DQLRNMALHDQLTKLYNRHFLIESAASKLAYVDRHGNDLSVLMIDIDFFKHINDQFGHHV 188 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++D L V R GGEEF S + A A LR +QI Sbjct: 189 GDRVLKAIADILKTGNRREDVVARFGGEEFVVLLEHCSLKSAVEKAESLR-----AQIEA 243 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I +T S G+A+ H++ ++ RAD A+Y AK GRNRVV D Sbjct: 244 LEPMGIAVTASFGVAQLMKHEQTFVELLSRADAAVYQAKDLGRNRVVAAED 294 >gi|289675727|ref|ZP_06496617.1| GGDEF [Pseudomonas syringae pv. syringae FF5] gi|330976813|gb|EGH76847.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 551 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 88/158 (55%), Gaps = 12/158 (7%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + Q A + +D+R ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHGVLDDIRHRF--AEIHYPAQPADLFC 496 Query: 219 TISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG +A H + +S + +AD ALY AK +GRNRV Sbjct: 497 TFSAGVVALGAHDDSLS-LASQADTALYCAKHAGRNRV 533 >gi|256821347|ref|YP_003145310.1| diguanylate cyclase [Kangiella koreensis DSM 16069] gi|256794886|gb|ACV25542.1| diguanylate cyclase [Kangiella koreensis DSM 16069] Length = 688 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 87/161 (54%), Gaps = 10/161 (6%) Query: 103 LSRIDCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N A + S N+ LSI+ +DID+FK +ND GH VGD V+ Sbjct: 526 LAHTDSLTGLANRRQIERALKREMESSNQSGKPLSILMYDIDHFKVVNDIHGHSVGDVVL 585 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGP 214 LS+ + +GR GGEEF A ++ +A +A L++ ++ Q I S Sbjct: 586 TNLSNFSKELLRDNDVLGRTGGEEFLAVLPNANLDQAIQVAKRLQQEVDLKQYTEIES-- 643 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ TIS G+ E E + + R D+ALY AK++GRNRV Sbjct: 644 ELNATISVGVTEYKQGEHMDEFLRRVDEALYQAKENGRNRV 684 >gi|308126563|ref|ZP_05910869.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|308109794|gb|EFO47334.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] Length = 369 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 21/172 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149 ++ LS D L+GL N F L Y + FDID+FK+IND GH Sbjct: 203 QLRNLSEKDGLTGLWNRRKFEEQLTHYANIVERYPDTPTTCLALFDIDHFKRINDERGHD 262 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKVI +++ L+ T FV R+GGEEFA ++ +EA ++ N LR + Sbjct: 263 EGDKVICSVAETLLREVRTTDFVSRVGGEEFAVIMPHTTVKEAEVVLNRLR-------VA 315 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259 + ++ +T+SAG ++ S Y+ AD ALY +K +GRN V +C S Sbjct: 316 VQLRSNMTVTVSAGYSDLTADRTRS---YKCADIALYESKSAGRNCVSLCHS 364 >gi|300931169|ref|ZP_07146515.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] gi|300461002|gb|EFK24495.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] Length = 558 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQACHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|257056862|ref|YP_003134694.1| diguanylate cyclase (GGDEF) domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586734|gb|ACU97867.1| diguanylate cyclase (GGDEF) domain-containing protein [Saccharomonospora viridis DSM 43017] Length = 409 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 117/255 (45%), Gaps = 36/255 (14%) Query: 35 FSIFIATVIFIANIFLFYIGL-----TPFYGLEYILVENLSLVIISITISLLLGYISG-- 87 F + +AT + + + Y+G +P + +L ++ +IT L G ++ Sbjct: 150 FGLILATALVYEGVQVLYVGGILALGSPSPTVRTVLGSKADNLLEAITTGL--GAVTAVL 207 Query: 88 --------SILKELFISYNRISQLSRI------DCLSGLLNHSAFISS-------LGSYN 126 +I+ + + +NR+++L ++ D +GLLN + S + Sbjct: 208 VVTMPPAVAIMAVVTVVFNRLAELDQLQDAVVTDPKTGLLNMRGWTESAERALNRVRRSG 267 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 L+++ D+D+FKQIND FGHP GD +A +++ L V VGR GGEEF Sbjct: 268 STLAVLMVDLDHFKQINDTFGHPAGDDALAAVANALSSVTRPADLVGRFGGEEFLLLLPN 327 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE------RCHKEPISTIIYRA 240 + A + A +R I +I + +TIS A H + + ++ A Sbjct: 328 ADAAAAELAAERVRTTIAALRIPTTDKRGAQVTISGRTASIGIAVFPRHADDLDGLLQAA 387 Query: 241 DQALYVAKKSGRNRV 255 D A+Y AK++GRNR+ Sbjct: 388 DTAVYDAKEAGRNRI 402 >gi|167573836|ref|ZP_02366710.1| ggdef domain protein [Burkholderia oklahomensis C6786] Length = 487 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+R D L+GL N AF +L + LS++F DID FK ND +GH G Sbjct: 315 RLQRLARTDSLTGLGNRRAFDENLRREWARALRSSRPLSLLFVDIDQFKNYNDCYGHQAG 374 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D V+ ++ L + V V R GGEEF + + A+ +A LR+ + + I Sbjct: 375 DDVLREVARCLALNVRRAADDVSRYGGEEFVITLPDTDAKSASAIAEHLRRAVYDLDIEH 434 Query: 211 SSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255 P +T+S G+ H + + ++ AD ALY AK +GRNRV Sbjct: 435 EKSPYRRVTVSIGLVT-SHDNAMHSDTALVKMADAALYQAKSTGRNRV 481 >gi|260779022|ref|ZP_05887914.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605186|gb|EEX31481.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 380 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 11/175 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 K+L + ++ +LS D L+ L N I L +Y E L + D D FKQ+N Sbjct: 193 KQLSKANKQLEELSLTDPLTQLPNRRCAIRKLKAYWHESTLNQEPLVCIMIDADNFKQVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH GD+++ L+ L F + V RLGG+EF + + A +A R+I+ Sbjct: 253 DSAGHDAGDRLLVELAQTLNDSFRSDDLVCRLGGDEFFVICPNTDVEGGAHVAEQTRQIV 312 Query: 204 ENSQINISSGPSIHI-TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +Q+ + +G I +IS G+AER ++ + +I AD A+Y AK GRN V Sbjct: 313 --AQMRVPAGDDIWCGSISVGVAERTYEMRDFNDLIKGADNAVYKAKSQGRNCVA 365 >gi|238751566|ref|ZP_04613057.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380] gi|238710284|gb|EEQ02511.1| Diguanylate cyclase [Yersinia rohdei ATCC 43380] Length = 370 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%) Query: 106 IDCLSGLLNHSAFISSLGS-YNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 ID L+ L N ++ L + YN + + ++ D+D+FK +ND +GH GD +++ + L Sbjct: 196 IDKLTQLNNRASVDYRLTTIYNNRQACGLMILDLDHFKFVNDTYGHDAGDVMLSEIGRLL 255 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 FVGR GGEEF Q +A +R+++EN + + SG I T+S Sbjct: 256 TEAIRDEDFVGRYGGEEFIIITHRHEPQTITAVAERIRQLVENLTVELPSGEKIKATMSI 315 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + + + AD+ALY AK+ GRN+VV Sbjct: 316 GASLYLPGMSMLKALKMADEALYQAKRQGRNQVV 349 >gi|218558443|ref|YP_002391356.1| hypothetical protein ECS88_1617 [Escherichia coli S88] gi|218365212|emb|CAR02932.1| conserved hypothetical protein [Escherichia coli S88] gi|294489729|gb|ADE88485.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli IHE3034] gi|307626941|gb|ADN71245.1| hypothetical protein UM146_09310 [Escherichia coli UM146] gi|315286286|gb|EFU45722.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3] gi|323952556|gb|EGB48428.1| GGDEF domain-containing protein [Escherichia coli H252] Length = 296 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L ++ DID FK +ND +GH +GD V+ L+ L V R GGEEF ++ Sbjct: 159 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATN 218 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 ++EA + ++++N I S G I+IT++AG++ +EP+ +I RAD+A+Y K Sbjct: 219 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGK 277 Query: 249 KSGRNRVVCFSDIEN 263 ++GRNR + F D +N Sbjct: 278 QTGRNRCM-FIDEQN 291 >gi|90578701|ref|ZP_01234511.1| hypothetical sensory box/GGDEF family protein [Vibrio angustum S14] gi|90439534|gb|EAS64715.1| hypothetical sensory box/GGDEF family protein [Vibrio angustum S14] Length = 339 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 15/172 (8%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148 S +++ LS D L+ L N + + L ++ +++V FDID+FK +ND +GH Sbjct: 146 SNEQLTHLSITDRLTQLYNRGHWENCLVEEFEHYQQMHQPMTLVMFDIDHFKNVNDTYGH 205 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD VI ++D + GR GGEEF G++ + LRK +E + + Sbjct: 206 VAGDAVIKTIADIVRKAKRQSDIAGRYGGEEFGVILPGTTADMTSYFTERLRKKVERANV 265 Query: 209 NISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVV 256 + G +I++TIS G+ C P + + + D ALY +K GRN+ Sbjct: 266 -VVDGKTINVTISLGV---CQLHPGITNYESWLEQTDSALYESKNKGRNQTT 313 >gi|254227594|ref|ZP_04921025.1| FOG: EAL domain containing protein [Vibrio sp. Ex25] gi|262395643|ref|YP_003287496.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. Ex25] gi|151939636|gb|EDN58463.1| FOG: EAL domain containing protein [Vibrio sp. Ex25] gi|262339237|gb|ACY53031.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. Ex25] Length = 788 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 99/188 (52%), Gaps = 20/188 (10%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQIN 143 + +EL I Y + +L+ D L+ L N H L S ++ L +++ D+D FK +N Sbjct: 324 DMYEELNIIYKKTKRLAETDHLTQLANRHRFHELATRELVSPSQHLWVIYVDLDNFKYVN 383 Query: 144 DNFGHPVGDKVIAFLSDQLVVV-------FGTPMFVGRLGGEEFAAAALGSSEQEAA--- 193 D +GH +GD ++ S + V + +P F RL G+EF A L SS Q+A Sbjct: 384 DKYGHELGDNLLKVFSSHIKNVCQKFSHDYDSPCFAARLSGDEF--AILLSSNQDAQRLP 441 Query: 194 -ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251 +LA++L K I N ++ S S +T S GIA+ ++ ++ AD A+Y AK++G Sbjct: 442 DLLASELLKPISN--LSPSWSNSFPVTASVGIAQYPQDGTDVAKLLSSADAAMYQAKRAG 499 Query: 252 RNRVVCFS 259 +N+ +S Sbjct: 500 KNQYAYYS 507 >gi|119773920|ref|YP_926660.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119766420|gb|ABL98990.1| GGDEF domain protein [Shewanella amazonensis SB2B] Length = 592 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 17/201 (8%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122 S ++I++ + LG G+ + S R+ QL+ D L+GL + F + Sbjct: 385 SRLLIAVLFCITLGL--GTWGWHSWQSQRRLKQLAEFDSLTGLFSRGHFTQVSLSAVEYA 442 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEE 179 + N +S + D+D FKQIND GH GD K +A + + V + GR+GGEE Sbjct: 443 KTLNAPISCILLDVDKFKQINDRLGHATGDWALKEVARICKEQVREY---EIFGRIGGEE 499 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIY 238 F + A LAN + + + + + +SG +T S G+ + + ++ Sbjct: 500 FCLLLPECELKHATDLANAMCQALRGADTS-ASGHKFELTASFGVTDNARAGYSLDKLMA 558 Query: 239 RADQALYVAKKSGRNRVVCFS 259 +AD+A+Y AKK GRN+V C+S Sbjct: 559 QADKAMYSAKKQGRNQVQCYS 579 >gi|302878330|ref|YP_003846894.1| diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302581119|gb|ADL55130.1| diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 599 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 8/172 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144 +L + +S+L D L+G LN ++ + +E L I DID FK++ND Sbjct: 426 KLEKELSEVSELVHQDQLTGALNRRGLDAAFDRESRRVDRSHESLCIALLDIDNFKRLND 485 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH VGDK + L + V R GGEEF + EAA+ L++ + Sbjct: 486 TMGHQVGDKALIHLCHVIKEALRPSDSVARYGGEEFVLILPDVTLAEAALTVERLQREL- 544 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 Q + I +T SAG+A+ E +I RAD+A+Y AK++G+NRVV Sbjct: 545 TKQFFMHENDRILVTFSAGVAQLAPNESQEELIGRADKAMYQAKQTGKNRVV 596 >gi|261340977|ref|ZP_05968835.1| YaiC/YhcK/ArdA family protein [Enterobacter cancerogenus ATCC 35316] gi|288316842|gb|EFC55780.1| YaiC/YhcK/ArdA family protein [Enterobacter cancerogenus ATCC 35316] Length = 367 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 108/224 (48%), Gaps = 22/224 (9%) Query: 41 TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100 T+ NI F G GLE+ L+L ++ I +L ++S L R+ Sbjct: 153 TLHLTGNIITFAPG-----GLEW----GLTLPVL-ILYPMLFAWVSHQTAIRLAEHKRRL 202 Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153 +S D ++G+ N + + L + E+ +I+ DID+FK IND +GH VGD+ Sbjct: 203 ELMSSRDGMTGVYNRRHWENLLRNEYEQCRRSHREATILLIDIDHFKGINDTWGHDVGDE 262 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISS 212 I ++ QL + F+GR GG+EFA G+ E+AI A + ++ E + + + Sbjct: 263 AIIAITRQLQMSLRAGDFIGRFGGDEFAVIMSGTP-AESAIAA--MSRVHERLNHMTLPR 319 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + + IS G+A R + AD ALY AK +GR R Sbjct: 320 APGVRLRISVGVAPWRTQFGHYREWLKAADVALYKAKNAGRGRT 363 >gi|254506497|ref|ZP_05118639.1| diguanylate cyclase [Vibrio parahaemolyticus 16] gi|219550671|gb|EED27654.1| diguanylate cyclase [Vibrio parahaemolyticus 16] Length = 325 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+ +LN AF+ L E +S + DID+FK+IND GH GD Sbjct: 138 LKRLSETDELTKVLNRRAFMLELDQAFMAARQAKEHVSCLMIDIDHFKEINDQVGHLSGD 197 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VIA ++ + +GRLGGEEF +A +A +R+ IE + + Sbjct: 198 EVIAHVARICQQQIRSSDAIGRLGGEEFGIMLSKIGAIQAYDIAERIRESIETTPCEV-D 256 Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 G I T+S GIAE + T++ +AD+A+Y +K +GRN+V + Sbjct: 257 GKLIFPTVSIGIAEADDTLSDVKTLLVQADKAMYYSKHTGRNQVTIY 303 >gi|166364040|ref|YP_001656313.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|166086413|dbj|BAG01121.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 310 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 9/165 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +L R D L+G+ N + Y+ S++F DID+FK IND FGH +G Sbjct: 141 QLEKLVRTDSLTGVNNRREILYLGEKEFQRCRRYHRYFSVLFIDIDHFKHINDTFGHTLG 200 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 +K + ++ + GR GGEEF A ++ ++AA A + ++I I ++ Sbjct: 201 NKTLITVAGAIKTCLRQVDSFGRFGGEEFVAILPETNLEDAATTAQRICQVINKLNIELA 260 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T S G+A + +I RAD A++ AK GRNRV Sbjct: 261 Q-QKVRVTASIGVATFSPQDNNLEEVIERADHAMFAAKNQGRNRV 304 >gi|85712024|ref|ZP_01043078.1| Signaling protein with a sensor domain and GGDEF domain [Idiomarina baltica OS145] gi|85694210|gb|EAQ32154.1| Signaling protein with a sensor domain and GGDEF domain [Idiomarina baltica OS145] Length = 518 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 80/165 (48%), Gaps = 9/165 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N +A + E +SI DID+FK+INDNFGH GDK + ++ Sbjct: 355 DSLTKLPNRAALEERMRVEEQRFKRTKEPVSIAVLDIDFFKRINDNFGHSAGDKTLQVIA 414 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L FV R GGEEF + +A + I N S I IT Sbjct: 415 SMLRKAVNESDFVCRYGGEEFVVLFPNTPIADAQARLEKACERIRNIPFKFRS-EDIRIT 473 Query: 220 ISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +S GIAE + ++++ AD ALY AKK+GRN++V S + N Sbjct: 474 VSVGIAELQQVNQSLTSLFETADNALYEAKKTGRNKIVLASAVSN 518 >gi|114048947|ref|YP_739497.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113890389|gb|ABI44440.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 324 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 9/170 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L + ++ +LS+ D L+ L N + L Y+ S+V DID+FK+IND Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQQCLEHEFDLYARYSGMSSLVMIDIDHFKRIND 203 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GDKVI ++ L VGR GGEEFA + +A LR+ I Sbjct: 204 TYGHVAGDKVIQHIAHILSHSLRETDCVGRYGGEEFAVVMPNTCGADALNFTERLRERIA 263 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 +S I + G I +T+S G+ E H S I +D+ALY AK+ GRN Sbjct: 264 DSTI-VYEGLKIKVTVSLGVCEIGKHITSSSGWISCSDKALYEAKQKGRN 312 >gi|328471925|gb|EGF42802.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus 10329] Length = 626 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 21/172 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149 ++ LS D L+GL N F L Y + FDID+FK+IND GH Sbjct: 460 QLRNLSEKDGLTGLWNRRKFEEQLTHYANIVERYPDTPTTCLALFDIDHFKRINDERGHD 519 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKVI +++ L+ T FV R+GGEEFA ++ +EA ++ N LR + Sbjct: 520 EGDKVICSVAETLLREVRTTDFVSRVGGEEFAVIMPHTTVKEAEVVLNRLR-------VA 572 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259 + ++ +T+SAG ++ S Y+ AD ALY +K +GRN V +C S Sbjct: 573 VQLRSNMTVTVSAGYSDLTADRTRS---YKCADIALYESKSAGRNCVSLCHS 621 >gi|291286731|ref|YP_003503547.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus DSM 12809] gi|290883891|gb|ADD67591.1| diguanylate cyclase with PAS/PAC sensor [Denitrovibrio acetiphilus DSM 12809] Length = 303 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 7/178 (3%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHS-AFISSLGSYNEKL------SIVFFDID 137 +S + EL ++ + D L+ + N A I+ NE L S+ F DID Sbjct: 123 LSKNTHGELICELEKLKEEVYTDTLTSIGNRKYAEITLTRRINEWLDVGIPFSVFFLDID 182 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK +ND +GH GDKV+ + L + R GGEEF A + +A Sbjct: 183 DFKTVNDTYGHDTGDKVLKMVGKSLTGTLRSMDVACRWGGEEFVIIAPNLTPASTRAVAE 242 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 LR IE S I+ I IT+S G + ++I RAD A+Y +K+SG+NRV Sbjct: 243 RLRIFIEKSWIHAGDNKEISITVSVGCTVCKGNDTPESVIKRADSAMYKSKQSGKNRV 300 >gi|209550963|ref|YP_002282880.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536719|gb|ACI56654.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 385 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 11/171 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 S N++++L+ D L+G LN + +LGS + +S++ DID+FKQ+ND GH GD Sbjct: 215 SRNQLTELAHHDPLTGALNRGGLAQRLPALGS--QPVSLLIIDIDHFKQLNDRHGHASGD 272 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ + + G+ + R GG+EF S Q+A +A +R + ++ Sbjct: 273 DILRLFASVSRSIMGSNDLLARQGGDEFLVVLKDVSGQDAVAIAERIRLAFAAAVLH--- 329 Query: 213 GPSIHI--TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 P + + T+S G+A R +I +AD+ALY +K+ GRNRV F + Sbjct: 330 QPDLAVFPTLSIGVATRGKSGGDFEQLIKKADEALYRSKREGRNRVKAFGE 380 >gi|170736188|ref|YP_001777448.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] gi|169818376|gb|ACA92958.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] Length = 510 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 9/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 LK + ++ +L+ D L+GL N F + L ++ LS++F D+D+FK Sbjct: 326 LKRRQEAEAKLYRLAHTDSLTGLDNRGTFDTVLAKETQRASRSGRPLSVLFVDVDHFKAF 385 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GHP GD V+ ++ L V R GGEEF + AA +A +R+ Sbjct: 386 NDYYGHPAGDDVLRQVAQSLSRCLRRDSDHVARYGGEEFVVTLPDTDGPGAATVAEGIRR 445 Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256 I I +T+S G A + +T++ RAD+ALY AK GRNRV+ Sbjct: 446 AIAELGIEHVKSQYGRVTVSIGTATADDGRMNAATLLRRADEALYRAKSGGRNRVL 501 >gi|89092064|ref|ZP_01165019.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92] gi|89083799|gb|EAR63016.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92] Length = 716 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 90/196 (45%), Gaps = 26/196 (13%) Query: 85 ISGSILKELFISYNRI---------------SQLSRIDCLSGLLNH-------SAFISSL 122 + G IL L I NR+ ++ + D L+GL N I+S Sbjct: 525 VGGLILMGLLIYRNRVISSYNSKLMNLNELLAKQATTDHLTGLSNRYLINQEMEKAIASA 584 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 Y L+++ FD+D FKQIND FGH GD V+ +S L+ +GR GGEEF Sbjct: 585 SRYETPLALILFDLDLFKQINDQFGHQAGDAVLQEVSQLLISESRQADTLGRWGGEEFIM 644 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 + A ++AN KI E+++ S IT SAG E +I R D Sbjct: 645 LCPHTDLNGAKLIAN---KICESTKAKKYS-VDFPITFSAGATVYIQGESHHELIKRVDD 700 Query: 243 ALYVAKKSGRNRVVCF 258 ALY AK SGR+++V Sbjct: 701 ALYQAKNSGRDKIVSL 716 >gi|15597048|ref|NP_250542.1| hypothetical protein PA1851 [Pseudomonas aeruginosa PAO1] gi|107101284|ref|ZP_01365202.1| hypothetical protein PaerPA_01002318 [Pseudomonas aeruginosa PACS2] gi|254234946|ref|ZP_04928269.1| hypothetical protein PACG_00822 [Pseudomonas aeruginosa C3719] gi|254240244|ref|ZP_04933566.1| hypothetical protein PA2G_00887 [Pseudomonas aeruginosa 2192] gi|9947839|gb|AAG05240.1|AE004611_5 hypothetical protein PA1851 [Pseudomonas aeruginosa PAO1] gi|126166877|gb|EAZ52388.1| hypothetical protein PACG_00822 [Pseudomonas aeruginosa C3719] gi|126193622|gb|EAZ57685.1| hypothetical protein PA2G_00887 [Pseudomonas aeruginosa 2192] Length = 401 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 16/197 (8%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLG 123 LV++ + +L Y+ +E F+ + ++ D L+GL+N + G Sbjct: 199 GLVVLICSFAL---YLQDYAQREQFLGRRLLGMMAEQDSLTGLVNRRYYELLAQRALEQG 255 Query: 124 SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181 + EK ++++ D+D FK ND++GHP GD + L L P+ RLGGEEFA Sbjct: 256 AREEKGVALILVDVDDFKAYNDHYGHPAGDAALRQLGVVLRQGARRPLDIAARLGGEEFA 315 Query: 182 AAALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIY 238 S E +A LR+ +E + S+GP +TIS G+A + + Sbjct: 316 VLLYDSEEGNTLAIAERLRQAVEALGIEHLGSSAGPC--LTISLGVAYSTSGMGLDALYR 373 Query: 239 RADQALYVAKKSGRNRV 255 AD+ALY AK +GRN V Sbjct: 374 EADRALYEAKDAGRNAV 390 >gi|113968915|ref|YP_732708.1| diguanylate cyclase [Shewanella sp. MR-4] gi|117919023|ref|YP_868215.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|113883599|gb|ABI37651.1| diguanylate cyclase [Shewanella sp. MR-4] gi|117611355|gb|ABK46809.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 324 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 9/170 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L + ++ +LS+ D L+ L N + L Y+ S+V DID+FK+IND Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQQCLEHEFDLHARYSGMSSLVMIDIDHFKRIND 203 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GDKVI ++ L VGR GGEEFA + +A LR+ I Sbjct: 204 TYGHVAGDKVIQHIAHILSHSLRETDCVGRYGGEEFAVVMPNTCGADALNFTERLRERIA 263 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 +S I + G I +T+S G+ E H S I +D+ALY AK+ GRN Sbjct: 264 DSTI-VYEGLKIKVTVSLGVCEIGKHITSSSGWISCSDKALYEAKQKGRN 312 >gi|332561061|ref|ZP_08415379.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rhodobacter sphaeroides WS8N] gi|332274859|gb|EGJ20175.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rhodobacter sphaeroides WS8N] Length = 878 Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 6/171 (3%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGD 152 S R+ + + D L+GL N A ++ + ++V D+D FK +ND H GD Sbjct: 446 SAERLRRQAAEDPLTGLANRRALADAVETRLTEAAPFALVMLDLDNFKAVNDLQRHDTGD 505 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +D+L V G V R+GG+EF A G+ A LA LR I ++ I + Sbjct: 506 AVLRIAADRLRAVAGADCLVARMGGDEFMVLAPGTDAASAPRLAEALRAAI-SAPIEVGR 564 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 P +H+ SAGIA H ++ ++ AD AL+ AK++GRNR V S + Sbjct: 565 QP-VHLAASAGIALHPDHGTSMALLMTGADIALHAAKRAGRNRSVLLSQAQ 614 >gi|288961767|ref|YP_003452077.1| two-component response regulator, modulated diguanylate cyclase [Azospirillum sp. B510] gi|288914047|dbj|BAI75533.1| two-component response regulator, modulated diguanylate cyclase [Azospirillum sp. B510] Length = 498 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 19/208 (9%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISS 121 E L+++ ++ G ++G I I+ R + +L+ D LSG N + Sbjct: 288 EPRELLVVKRPLTASDGEVTGVIGIATDITERRRMEHELHRLATTDPLSGAHNRRHILDL 347 Query: 122 L--------GSYNEKLSI-----VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 L G + ++ + DID+FK+IND+ GH GD I +++ Sbjct: 348 LDRLLTGQGGGAETRQTVGAACLIMLDIDHFKRINDDLGHAAGDVAIRSTVEEIRNHLRA 407 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-R 227 +GR+GGEEFA +S + A++A LRK + I +S G +T S G+ E R Sbjct: 408 TDQIGRIGGEEFAILLPETSGTDGAVIAERLRKGLAALVIVLSDGRRFQMTGSFGLTEVR 467 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255 + + +++ RADQALY AK GRNRV Sbjct: 468 PLGDTVESVLGRADQALYRAKALGRNRV 495 >gi|94314500|ref|YP_587709.1| diguanylate cyclase (GGDEF) domain-containing protein [Cupriavidus metallidurans CH34] gi|93358352|gb|ABF12440.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 548 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 9/160 (5%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G+ N F ++ ++ ++ D+D FKQ ND +GHP GD+ + + Sbjct: 377 VDALTGIPNRRYFQRESHAAVTRAYERGTEIGLLILDVDLFKQFNDLYGHPRGDECLRQV 436 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIH 217 + L V F RLGGEEFA S+ +E +A + + I P Sbjct: 437 ATALTCVLDGTQFCARLGGEEFAVVLPDSTSEETRTIARRMVAAVRELGIPHHGTPVQPF 496 Query: 218 ITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 +TIS G P + +++RAD A+Y AK++GRNR V Sbjct: 497 VTISVGAVCAVPDAPRLEPLLHRADSAMYRAKRAGRNRYV 536 >gi|28897128|ref|NP_796733.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|260361701|ref|ZP_05774728.1| PAS domain protein [Vibrio parahaemolyticus K5030] gi|260878040|ref|ZP_05890395.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus AN-5034] gi|260896935|ref|ZP_05905431.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|28805337|dbj|BAC58617.1| putative sensory box/GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|308088738|gb|EFO38433.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|308090088|gb|EFO39783.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus AN-5034] gi|308115493|gb|EFO53033.1| PAS domain protein [Vibrio parahaemolyticus K5030] Length = 626 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 21/172 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149 ++ LS D L+GL N F L Y + FDID+FK+IND GH Sbjct: 460 QLRNLSEKDGLTGLWNRRKFEEQLTHYANIVERYPDTPTTCLALFDIDHFKRINDERGHD 519 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKVI +++ L+ T FV R+GGEEFA ++ +EA ++ N LR + Sbjct: 520 EGDKVICSVAETLLREVRTTDFVSRVGGEEFAVIMPHTTVKEAEVVLNRLR-------VA 572 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259 + ++ +T+SAG ++ S Y+ AD ALY +K +GRN V +C S Sbjct: 573 VQLRSNMTVTVSAGYSDLTADRTRS---YKCADIALYESKSAGRNCVSLCHS 621 >gi|126463806|ref|YP_001044919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rhodobacter sphaeroides ATCC 17029] gi|126105617|gb|ABN78147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides ATCC 17029] Length = 878 Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 6/171 (3%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGD 152 S R+ + + D L+GL N A ++ + ++V D+D FK +ND H GD Sbjct: 446 SAERLRRQAAEDPLTGLANRRALADAVETRLTEAAPFALVMLDLDNFKAVNDLQRHDTGD 505 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +D+L V G V R+GG+EF A G+ A LA LR I ++ I + Sbjct: 506 AVLRIAADRLRAVAGADCLVARMGGDEFMVLAPGTDAASAPRLAEALRAAI-SAPIEVGR 564 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 P +H+ SAGIA H ++ ++ AD AL+ AK++GRNR V S + Sbjct: 565 QP-VHLAASAGIALHPDHGTSMALLMTGADIALHAAKRAGRNRSVLLSQAQ 614 >gi|298247691|ref|ZP_06971496.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963] gi|297550350|gb|EFH84216.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963] Length = 553 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 11/204 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------ 123 S++I+ I +L + ++ ++L ++ L+ D L+G+ NH ++ L Sbjct: 344 SILIVLILRQVLATHELNNLKRDLQEKNAQLDTLAASDPLTGVSNHRTLVTRLDEEVARA 403 Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + S++F DID+FK IND +GH GD V+ ++ ++ + + +GR GGEEF A Sbjct: 404 KAQQAPCSVLFMDIDHFKAINDQYGHSTGDLVLCQVARRVASILRSEDCLGRWGGEEFLA 463 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRAD 241 G A +A +R ++ Q ++S ++ +T S GIA +I AD Sbjct: 464 VLPGQDLCSAYEVAEMIR--MQVLQQVVASEKNLRVTCSLGIATYPQTAASRDGLINAAD 521 Query: 242 QALYVAKKSGRNRVVCFSDIENNT 265 QA+Y AK+ GRN+ C + ++ +T Sbjct: 522 QAMYEAKRLGRNQ-TCLAKLKKDT 544 >gi|119484393|ref|ZP_01619010.1| hypothetical protein L8106_01707 [Lyngbya sp. PCC 8106] gi|119457867|gb|EAW38990.1| hypothetical protein L8106_01707 [Lyngbya sp. PCC 8106] Length = 466 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 133/258 (51%), Gaps = 23/258 (8%) Query: 19 LESFSPHTFMIYFSIFFSIFIA-TVIFIANIFLFYIGLT----PFYGLEYILVENLSLVI 73 L +F + F+++ + F A T IFI + F + G+T PF + L+ L LV Sbjct: 214 LPAFLVYPFLVWAPLRFETRGASTAIFIISGFALF-GVTHQVGPF--ISPSLLNTLILVW 270 Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126 + + ++ ++ + + + EL + + + QL+ D L+GL N + L YN Sbjct: 271 LFVNVAAIVSLVLAASIGELKTAKHYLEQLALHDSLTGLDNRLLLMEKLAESLATVQRYN 330 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + +I++ D+D FK IND FGH GD V+ ++ +L V RLGG+EF Sbjct: 331 TQSAIIYLDLDGFKPINDTFGHEAGDFVLIEVAKRLRSCVREVDTVARLGGDEFVVLLHN 390 Query: 187 SSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242 S+ + D +I+E N+ IN+ G ++++ +S GIA + K P ++ AD+ Sbjct: 391 LSDTDTVQQIAD--RIVETINASINL-FGTTVNVGVSMGIALIPQDGKYP-HQLLKNADK 446 Query: 243 ALYVAKKSGRNRVVCFSD 260 A+Y+AK+ G+N+ FS+ Sbjct: 447 AMYLAKQQGKNQYQFFSE 464 >gi|107026991|ref|YP_624502.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] gi|116691812|ref|YP_837345.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] gi|105896365|gb|ABF79529.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] gi|116649812|gb|ABK10452.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] Length = 510 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 9/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 LK + ++ +L+ D L+GL N F + L ++ LS++F D+D+FK Sbjct: 326 LKRRQEAEAKLYRLAHTDSLTGLDNRGTFDTVLAKETQRASRSGRPLSVLFVDVDHFKAF 385 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GHP GD V+ ++ L V R GGEEF + AA +A +R+ Sbjct: 386 NDYYGHPAGDDVLRQVAQSLSRCLRRDSDHVARYGGEEFVVTLPDTDGPGAATVAEGIRR 445 Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256 I I +T+S G A + +T++ RAD+ALY AK GRNRV+ Sbjct: 446 AIAELGIEHVKSQYGRVTVSIGTATADDGRMNAATLLRRADEALYRAKSGGRNRVL 501 >gi|323499312|ref|ZP_08104289.1| sensory box/GGDEF family protein [Vibrio sinaloensis DSM 21326] gi|323315700|gb|EGA68734.1| sensory box/GGDEF family protein [Vibrio sinaloensis DSM 21326] Length = 303 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 81/164 (49%), Gaps = 11/164 (6%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++++L+ D L+ L N S+ + N LS + DID+FKQIND GH G Sbjct: 139 QLAELANTDELTKLCNRRKLWQFFSSAFNRATQDNHPLSCILIDIDFFKQINDCHGHDFG 198 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI L+D + GR+GGEEF + EA +A LR NS +N Sbjct: 199 DQVIVELADMIRHNLRETDCCGRIGGEEFLIVLDHTHATEAFDIAERLRLAFHNSPLNKP 258 Query: 212 SGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNR 254 P +IS G+ E + +Y RADQALY AK GRN+ Sbjct: 259 KAP---FSISCGVTELVDNDGDFFALYRRADQALYDAKHKGRNQ 299 >gi|301018607|ref|ZP_07182959.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] gi|300399649|gb|EFJ83187.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] Length = 303 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGIRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|222033280|emb|CAP76020.1| Uncharacterized protein ydeH [Escherichia coli LF82] gi|312946119|gb|ADR26946.1| hypothetical protein NRG857_07610 [Escherichia coli O83:H1 str. NRG 857C] Length = 296 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L ++ DID FK +ND +GH +GD V+ L+ L V R GGEEF ++ Sbjct: 159 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKAAN 218 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 ++EA + ++++N I S G I+IT++AG++ +EP+ +I RAD+A+Y K Sbjct: 219 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGK 277 Query: 249 KSGRNRVVCFSDIEN 263 ++GRNR + F D +N Sbjct: 278 QTGRNRCM-FIDEQN 291 >gi|149928083|ref|ZP_01916330.1| GGDEF domain [Limnobacter sp. MED105] gi|149823169|gb|EDM82406.1| GGDEF domain [Limnobacter sp. MED105] Length = 347 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 19/198 (9%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SA 117 L+ L ++I S+ L + ++ K + +S + D L+GLLN SA Sbjct: 153 LILTLVVLIHSVGFVSLTLWRQSTLRKRFAVELLHLSNQACSDPLTGLLNRRGWQDMSSA 212 Query: 118 FISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 ++ + N+ + S+ DIDYFKQ ND +GH GD + ++ L F + R+G Sbjct: 213 YLRRMQRENQLQGSVAIIDIDYFKQYNDTYGHEAGDIRLREFAETLRTNFRPGDLIARVG 272 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236 GEEFA + A+D ++I++ ++N + SAGI + H + I Sbjct: 273 GEEFAVLLPNCT-------ADDTQRIVDRIRLN----GCCKVGFSAGICDISHTDSIDRT 321 Query: 237 IYRADQALYVAKKSGRNR 254 + +AD ALY AK GRNR Sbjct: 322 MAQADHALYQAKNKGRNR 339 >gi|307720381|ref|YP_003891521.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294] gi|306978474|gb|ADN08509.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294] Length = 519 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 11/177 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 +G + E + ++ +L+ ID L+G+ N F I Y LS++ FD+D Sbjct: 344 TGKDVTEQMLLEEKLRELAAIDKLTGISNRLRFDEVLQFSIDRAKRYKVNLSVILFDVDK 403 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK++ND +GH GD V+ ++ + R GG+EF EA IL Sbjct: 404 FKKVNDTYGHLCGDDVLKMIAKIGHDSIRKSDLIARWGGDEFIILQSNIPSDEAQILVER 463 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 LR IE+ +T+S G+ + ++I RAD ALY AK+ GRNRV Sbjct: 464 LRHNIESYNFKDVG----KVTVSFGVTHFKEDDTKESLIKRADDALYEAKEHGRNRV 516 >gi|300856234|ref|YP_003781218.1| putative response regulator [Clostridium ljungdahlii DSM 13528] gi|300436349|gb|ADK16116.1| predicted response regulator [Clostridium ljungdahlii DSM 13528] Length = 302 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 18/173 (10%) Query: 98 NRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 N I++L +D L+ + N + I SL + N+ LS++ DID+FK++ND +GH Sbjct: 135 NHINELIVLDPLTQVFNKRFIYERLPADIIKSLLN-NKPLSLIMADIDFFKKVNDIYGHV 193 Query: 150 VGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ ++ L V + R GGEEF +SE A +A +RK IEN+ I Sbjct: 194 AGDEVLKVIASILSASVRKDVDWTARYGGEEFIICLKNASEDTAVKVAEKMRKAIENTII 253 Query: 209 NISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 N G SI +T S G+ E ++E +I D+ LY AK +GRN+V+ Sbjct: 254 NY-EGASIKVTASFGVKTLFNENLNEED---LIKEVDKKLYEAKNAGRNKVIA 302 >gi|299771037|ref|YP_003733063.1| WspR [Acinetobacter sp. DR1] gi|298701125|gb|ADI91690.1| WspR [Acinetobacter sp. DR1] Length = 420 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 10/175 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 K L I + + LS+ D L+ + N F + L+++F DID+FK N Sbjct: 235 KILRIEASELLHLSQQDALTKISNRRTFDEMFDFFYYRAKQEQRPLAVLFIDIDFFKNYN 294 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GDKVI+ ++ + FV R GGEEF + Q A +A ++ K I Sbjct: 295 DFYGHQMGDKVISSIASAIKNSIRHVDFVARYGGEEFVVLLPKTPAQGAYAVAANIYKAI 354 Query: 204 ENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E I + +S S H+TIS G + K +I+ ADQALY AK+ GRN++ Sbjct: 355 ERQAIPHAASLVSTHVTISLGFTVYTEGLKVTQENLIHAADQALYRAKQLGRNQI 409 >gi|238928087|ref|ZP_04659847.1| GGDEF domain protein [Selenomonas flueggei ATCC 43531] gi|238884047|gb|EEQ47685.1| GGDEF domain protein [Selenomonas flueggei ATCC 43531] Length = 600 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 12/166 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152 + + ID L+G+ N + F S++ + LS+V FDID+FK IND +GH GD Sbjct: 401 VKKRMEIDPLTGVYNRNRFPSAISDFTRIAQNTGAPLSLVMFDIDHFKSINDTYGHDAGD 460 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + + + R GGEEF L +A AN +R+ + + + + Sbjct: 461 EVLFGFAQTIRSFLDRRHILIRWGGEEFILLCLHYDGAKAQAFANQIREGVAKAWLLTAQ 520 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +T S GI + + ++ RAD ALY +K+ GRNR+ C Sbjct: 521 ----QVTCSGGIGVWHGPDDDATALVKRADTALYASKEGGRNRISC 562 >gi|312880837|ref|ZP_07740637.1| diguanylate cyclase with extracellular sensor [Aminomonas paucivorans DSM 12260] gi|310784128|gb|EFQ24526.1| diguanylate cyclase with extracellular sensor [Aminomonas paucivorans DSM 12260] Length = 648 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 19/190 (10%) Query: 86 SGSILKELFISYNRISQL----SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134 +G+ L +LF+ + + ++ D L+G N AF ++ Y LS+V Sbjct: 449 AGASLIDLFLLRRDMEEQLLHQAQTDPLTGATNRRAFFEAVAREMHRSRRYGVPLSLVVL 508 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+D FK++ND FGH GD V+ L +GRLGGEEF + +EA Sbjct: 509 DVDLFKRVNDRFGHDAGDTVLQRLVIAARNTLRQEDVLGRLGGEEFGILLPETPLKEACA 568 Query: 195 LANDLRKIIEN------SQINISSGPSIHITISAGIA-ERCHKEPISTIIY-RADQALYV 246 A +R +EN + G +T S G+A R K+ + +Y RAD+ LY Sbjct: 569 AAERVRMAVENLRPLPSAPCPAGKGTEPRVTASFGVASHRPEKDEDAQSLYRRADKNLYR 628 Query: 247 AKKSGRNRVV 256 AK +GRNR+V Sbjct: 629 AKAAGRNRIV 638 >gi|310768330|gb|ADP13280.1| putative signal transduction protein [Erwinia sp. Ejp617] Length = 527 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 8/179 (4%) Query: 85 ISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDY 138 I ++L + + +++I +L ++ D ++GLLN + LG S + +++ DID Sbjct: 334 IKRAMLAGIALVHDKIGRLKSEAQTDPMTGLLNRRGLDAVLGYFFSTKQPFAVLALDIDR 393 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +ND FGH GD VI ++ QL + + R GGEEF G+ A ++A Sbjct: 394 FKSVNDAFGHAAGDTVIKTVAHQLELGARQADVLCRNGGEEFLMLLPGADRDRALMVAER 453 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +RK IE Q+ + + ++ I+I E + +AD+ALY AK +GRN VV Sbjct: 454 VRKRIE--QLRMEAAGNVTISIGISFWSSDSGEDMHCAFGQADEALYRAKNAGRNCVVV 510 >gi|296135372|ref|YP_003642614.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12] gi|295795494|gb|ADG30284.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12] Length = 780 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GLLN L +++ ++V FD+D+FK IND FGH GD V Sbjct: 357 RLANQDSLTGLLNRRGMGEYLQRAHDRARDHGIGYALVLFDLDHFKLINDGFGHAAGDAV 416 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L V R GGEEF SS Q A A LR++I ++++++ G Sbjct: 417 LQQVAHLLQTRVRKEDQVARWGGEEFLVLLPDSSLQTAHATAEKLRELISHTRMSV-GGA 475 Query: 215 SIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259 + +T S G++ P+++ ++ + D ALY AK GRNRV F Sbjct: 476 ELRLTASFGVSAWEPGGPLASAELLGQCDSALYNAKAGGRNRVKQFE 522 >gi|224826765|ref|ZP_03699865.1| diguanylate cyclase [Lutiella nitroferrum 2002] gi|224600985|gb|EEG07168.1| diguanylate cyclase [Lutiella nitroferrum 2002] Length = 515 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 7/170 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNF 146 ++ + NR Q S D L+GL N S L + + +++ DID+FK +ND++ Sbjct: 346 MRAMQQQLNRFRQESNTDALTGLGNRRELDSVLDDWKYSRQPFAVLMIDIDFFKSVNDSY 405 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+ + L+ + V R+GGEEF G+ A +A L +E Sbjct: 406 GHDTGDQALTALAQLMRDSAREGDVVCRMGGEEFVMLLPGADAIGAERVAERLCSRVEAY 465 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ ++ I ++AGIA+ E ++ AD ALY AK+ GRNRVV Sbjct: 466 RVPGLPALTVSIGVAAGIAD----ETPEALLREADDALYQAKQQGRNRVV 511 >gi|221369404|ref|YP_002520500.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodobacter sphaeroides KD131] gi|221162456|gb|ACM03427.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodobacter sphaeroides KD131] Length = 881 Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 6/171 (3%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGD 152 S R+ + + D L+GL N A ++ + ++V D+D FK +ND H GD Sbjct: 449 SAERLRRQAAEDPLTGLANRRALADAVETRLTEAAPFALVMLDLDNFKAVNDLQRHDTGD 508 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +D+L V G V R+GG+EF A G+ A LA LR I ++ I + Sbjct: 509 AVLRIAADRLRAVAGADCLVARMGGDEFMVLAPGTDAASAPRLAEALRAAI-SAPIEVGR 567 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 P +H+ SAGIA H ++ ++ AD AL+ AK++GRNR V S + Sbjct: 568 QP-VHLAASAGIALHPEHGTSMALLMTGADIALHAAKRAGRNRSVLLSQAQ 617 >gi|77465404|ref|YP_354907.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides 2.4.1] gi|77389822|gb|ABA81006.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides 2.4.1] Length = 881 Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 6/171 (3%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGD 152 S R+ + + D L+GL N A ++ + ++V D+D FK +ND H GD Sbjct: 449 SAERLRRQAAEDPLTGLANRRALADAVETRLTEAAPFALVMLDLDNFKAVNDLQRHDTGD 508 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +D+L V G V R+GG+EF A G+ A LA LR I ++ I + Sbjct: 509 AVLRIAADRLRAVAGADCLVARMGGDEFMVLAPGTDAASAPRLAEALRAAI-SAPIEVGR 567 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 P +H+ SAGIA H ++ ++ AD AL+ AK++GRNR V S + Sbjct: 568 QP-VHLAASAGIALHPEHGTSMALLMTGADIALHAAKRAGRNRSVLLSQAQ 617 >gi|311696984|gb|ADP99857.1| membrane protein containing diguanylate cyclase, predicted domains [marine bacterium HP15] Length = 396 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 36/241 (14%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPF--YGL-EYILVENLSLVIISITISLLLGYISG 87 F I ++ +A V+ IA + G P +GL + ILV +L LV S Sbjct: 163 FGIHGTLMMAQVLVIA---VSVTGSAPLDLHGLLKLILVNHLLLV-------------SA 206 Query: 88 SILKELFISYNRISQ----LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136 + + +++ R Q L+ D L+ L N AF EK ++++ D+ Sbjct: 207 TAMALPLLAFTRAEQALVALAERDGLTQLFNRRAFYREGNLAFEKAREDGSLITVLMIDL 266 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AI 194 D+FKQIND +GH GD+V+ +++ + +GR+GGEEF AA L ++ +EA A+ Sbjct: 267 DHFKQINDRWGHATGDEVLRIVANLMKAELRDDDIIGRVGGEEF-AAVLRNNNREAIEAV 325 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253 L++I+E + G +H++ S G A S ++ AD+ALY AK +GRN Sbjct: 326 TGRLLQRIVEAGR--GVDGVPVHLSASIGGASLALEHAAFSDVMASADRALYQAKHNGRN 383 Query: 254 R 254 R Sbjct: 384 R 384 >gi|311108951|ref|YP_003981804.1| diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310763640|gb|ADP19089.1| diguanylate cyclase, GGDEF domain protein 19 [Achromobacter xylosoxidans A8] Length = 533 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 10/172 (5%) Query: 98 NRISQLSR---IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI +LS D ++GL+N +++L + + + D+D+FK +ND FGH G Sbjct: 357 RRIDKLSSDTITDPMTGLINRRGLALQVTALQRAQQPFAALALDLDHFKLVNDTFGHAAG 416 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ L+ L R+GGEEF +S A +A +R + + Sbjct: 417 DQVLIALAGILRTCIRAEDAPCRVGGEEFLILMPDASRDTAGKVAERIRAATASQVMPQG 476 Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 G +T+S GIA +P I ++ +ADQALY AK SGR+RV +S +E Sbjct: 477 VG---QVTVSIGIALWPSDDPDIDKVLAKADQALYRAKHSGRDRVEAWSAVE 525 >gi|296124056|ref|YP_003631834.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776] gi|296016396|gb|ADG69635.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776] Length = 690 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 S NE S++F D D+FK IND GH VGD+V+ L+ L + +GR GGEEF Sbjct: 408 SQNEVFSVIFVDADHFKSINDKHGHTVGDQVLVELARLLQHESYSGEIIGRYGGEEFIVL 467 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 + + A + R I++ + + PS+ IT S G+++ + + +++++ RAD+A Sbjct: 468 CPATDVELAVRKSERFRMSIQS--MRFADYPSLRITASFGVSQVVNGDTVASLVERADKA 525 Query: 244 LYVAKKSGRNRV 255 LY AK++GRNR Sbjct: 526 LYQAKQTGRNRT 537 >gi|83312105|ref|YP_422369.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82946946|dbj|BAE51810.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Magnetospirillum magneticum AMB-1] Length = 562 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + N KL + D+D FK +ND +GHP GD+V+ L+ Sbjct: 400 DGLTGLFNHTFIVQYLDTALAAARRENGKLCVAMIDVDLFKSVNDTYGHPTGDQVLVALA 459 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L T +GR GGEEF S +E + N LR+ + +++ SG Sbjct: 460 RLLQQRLRTNDLIGRYGGEEFVVVMQNVSLKEGMTVMNGLRE--DFARLKFQSGDQFFSC 517 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T S GI+ R + +I AD+ALY AK++GRNR+ Sbjct: 518 TFSGGIS-RFPEIAGDRLIEAADKALYEAKQAGRNRI 553 >gi|88860392|ref|ZP_01135030.1| cyclic nucleotide phosphodiesterase, putative [Pseudoalteromonas tunicata D2] gi|88817590|gb|EAR27407.1| cyclic nucleotide phosphodiesterase, putative [Pseudoalteromonas tunicata D2] Length = 618 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 17/195 (8%) Query: 70 SLVIISITISLLLGYISGSILK--ELFISYNRISQLSR----IDCLSGLLNHSAFISSLG 123 S+V + + I+++L + + K L + + ++Q++ ++CL+ L I Sbjct: 430 SIVSLCLVITVVLALYARKVSKINHLRATTDELTQIANRRHILNCLNRL------IKGAN 483 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + L I DIDYFK+INDNFGH GD V+ ++ +GRLGGEEF Sbjct: 484 KTKQPLCIAMLDIDYFKKINDNFGHLAGDLVLVEVAQVAQSCLRKHDLMGRLGGEEFLFV 543 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA--GIAERCH-KEPISTIIYRA 240 +++Q+A + +R + I I + S H+T+S GI+ E + ++I RA Sbjct: 544 LPNTTQQQARTVCESIRNALHT--IAIDNDESGHLTVSGSFGISILSKADEKVESLIQRA 601 Query: 241 DQALYVAKKSGRNRV 255 D ALY AK +GR+++ Sbjct: 602 DTALYQAKNNGRDQI 616 >gi|83746369|ref|ZP_00943421.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|207721977|ref|YP_002252415.1| signal transduction protein ggdef domain [Ralstonia solanacearum MolK2] gi|207744678|ref|YP_002261070.1| signal transduction protein ggdef domain [Ralstonia solanacearum IPO1609] gi|83726910|gb|EAP74036.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|206587150|emb|CAQ17734.1| signal transduction protein ggdef domain [Ralstonia solanacearum MolK2] gi|206596085|emb|CAQ63012.1| signal transduction protein ggdef domain [Ralstonia solanacearum IPO1609] Length = 457 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 12/197 (6%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNE- 127 S++ + + LL+ ++ ++ + LF + + Q S D L+G+ N S F +++E Sbjct: 252 SMLAPGVLVCLLVWEVT-TLYRRLFEANVSLQQASTHDALTGIYNRSYFNEQFPRAFDEA 310 Query: 128 -----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFA 181 S++ D+D+FK+ ND FGH GD + ++ L V+ F+ R GGEEFA Sbjct: 311 RRKAQPFSLLMIDVDHFKRYNDTFGHLKGDGCLVTIAAALEGVLRRRAGFIARYGGEEFA 370 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYR 239 ++ ++A +LA R+ + + +I + PS ++TISAG A + S +I Sbjct: 371 VVLPDATPRDALLLAESAREAVLHLRIEAPT-PSRYVTISAGCATAMPEASTSLEALIEA 429 Query: 240 ADQALYVAKKSGRNRVV 256 AD LY AK +GRN VV Sbjct: 430 ADATLYRAKAAGRNLVV 446 >gi|89896138|ref|YP_519625.1| hypothetical protein DSY3392 [Desulfitobacterium hafniense Y51] gi|219670556|ref|YP_002460991.1| diguanylate cyclase with PAS/PAC sensor [Desulfitobacterium hafniense DCB-2] gi|89335586|dbj|BAE85181.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540816|gb|ACL22555.1| diguanylate cyclase with PAS/PAC sensor [Desulfitobacterium hafniense DCB-2] Length = 331 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 10/173 (5%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137 I+ + EL S + L+R D L+ LN AFI L E +++ DID Sbjct: 149 IAKNAEDELRKSRDNAEVLARTDYLTKTLNRRAFIERLQEELERTKRTQEGFAMILVDID 208 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 YFK++ND FGH GD V+ +D L F+GR GGEEF + ++AA++A Sbjct: 209 YFKKVNDQFGHLAGDYVLQKFADCLSNNVRPYDFIGRYGGEEFIICLPDTDVEQAALVAE 268 Query: 198 DLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAK 248 +R+ +E +++ I +T S G+A + + + +I +AD A+YVAK Sbjct: 269 RMRESVEALEVDYLHA-QIKVTGSFGVAVYDSHSSDTLDELIEKADGAMYVAK 320 >gi|118591123|ref|ZP_01548522.1| sensory box/response regulator [Stappia aggregata IAM 12614] gi|118436199|gb|EAV42841.1| sensory box/response regulator [Stappia aggregata IAM 12614] Length = 333 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 114/269 (42%), Gaps = 20/269 (7%) Query: 6 KDFLSIWLCHEKNLESF--SPHTFMIYFSIF--FSIFIATVIFIANIFLFYIGLTPFYGL 61 KD I+ K ESF P + S++ +A V A+ L G Y Sbjct: 63 KDRAGIYSGCNKAFESFIGLPANKVRGASVYDVAPEELAKVYEAADEELMQRGGVQIYEA 122 Query: 62 EYILVENLSLVII---SITISLLLGYISGSILKELFISYNRI--SQLSRI---DCLSGLL 113 E + + ++T + G ++G L I+ + QL R D L+ Sbjct: 123 EVCYADGKYRTVTFHKAVTRDPVSGEVNGLAGSMLDITERKRLEEQLKRAAERDALTDAY 182 Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N F S ++ LSI+ D+D+FKQIND FGH GD + + L V Sbjct: 183 NRRRFFELADSAEDRAKKTSASLSILVLDVDHFKQINDRFGHACGDAALNHIVGLLKNVL 242 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 P R GGEEF +A +A +R +E + ++ I + +S G+A Sbjct: 243 QAPHIFARAGGEEFYCLLEECGLDDAFTIAERIRGAVETTP-HMHGEQVIPMRVSIGVAS 301 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255 E +S I RAD ALY AK++GRNRV Sbjct: 302 VADGEKVSQTIARADDALYCAKQAGRNRV 330 >gi|146309329|ref|YP_001189794.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas mendocina ymp] gi|145577530|gb|ABP87062.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas mendocina ymp] Length = 554 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 82/165 (49%), Gaps = 9/165 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LSR D L+GLL H + + S+V DID+FK++ND GH GD VI Sbjct: 392 LSR-DSLTGLLKHGDIKEQVAIELERALRSGARASVVMLDIDHFKRVNDEHGHAAGDNVI 450 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L++ L +GR GGEEF A + Q+A ++ +++R+ + I+ G Sbjct: 451 RALANLLRQRLRRVDSLGRYGGEEFLAVLPDCTPQQARMILDEIRERFAELRF-IADGGE 509 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 T+SAGIA + RAD+ALY AK GRN+V D Sbjct: 510 FSCTLSAGIAGTDVHSNAEQLRERADKALYAAKHGGRNQVQIADD 554 >gi|313201708|ref|YP_004040366.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312441024|gb|ADQ85130.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] Length = 783 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 97/199 (48%), Gaps = 24/199 (12%) Query: 77 TISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128 TI +L GY + + ++ S I + + D L+GL N F L + + Sbjct: 310 TIIVLRGYRLKREVARQAAASQKLIWKQANYDFLTGLPNRPMFHKQLAEEIHKSLQHQQP 369 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALG 186 L ++F D+D FKQIND GH +GDK++ ++ V + RLGG+EF + + Sbjct: 370 LVLMFLDLDNFKQINDQLGHSIGDKLLVETGARIAAVARDCTLLARLGGDEFTIVLSNVQ 429 Query: 187 SSEQEAAILANDLRKI-----IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240 + +Q + LR++ IEN +++T S GIA H + T++ A Sbjct: 430 NQQQVEWLCERILRQVSLPFTIENH--------VVYVTTSIGIASFPEHSRDVETLMKYA 481 Query: 241 DQALYVAKKSGRNRVVCFS 259 DQA+Y AK+ GRNR FS Sbjct: 482 DQAMYEAKRLGRNRYQFFS 500 >gi|224826006|ref|ZP_03699109.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002] gi|224601643|gb|EEG07823.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002] Length = 650 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 QL R D L+G+ N +L + + ++++ D D+FK+IND +GH GD V Sbjct: 473 QLVR-DPLTGVFNRRYLDDALPRVLAHTLALGKPVALLMLDADHFKRINDTYGHKAGDCV 531 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 ++ L +L + V R GGEEF G S + A A LRK+++ I Sbjct: 532 LSTLGARLRDSLRSNDMVCRYGGEEFLIVLPGMSLEHAIAKAEQLRKVVQQWPIEALDH- 590 Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++++T+S G+A H E ++++ AD ALYVAK SGR+R +C ++ Sbjct: 591 TLNVTVSIGVACSPLHAEDAESLVHAADTALYVAKSSGRDR-LCVAE 636 >gi|153213558|ref|ZP_01948848.1| GGDEF family protein [Vibrio cholerae 1587] gi|124115894|gb|EAY34714.1| GGDEF family protein [Vibrio cholerae 1587] Length = 489 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 12/188 (6%) Query: 76 ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSI 131 + ++L+ +++G +L L ++R +QL+ D ++GLLN S L +++ L+I Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190 DID FKQIND +GH +GD+VI ++ +Q+ + V R GGEEF EQ Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248 I+ + +S + + SG T+S GI E + AD+ LYVAK Sbjct: 425 ITRIMQRIFDAVCRDSPLILESG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480 Query: 249 KSGRNRVV 256 SG+N++V Sbjct: 481 TSGKNQLV 488 >gi|116695531|ref|YP_841107.1| putative GGDEF family protein [Ralstonia eutropha H16] gi|113530030|emb|CAJ96377.1| Putative GGDEF family protein [Ralstonia eutropha H16] Length = 601 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 6/178 (3%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 L+E ++ +R D L+GLLN A +++ + ++ S+V D+D FKQIND G Sbjct: 421 LRERASLTEQLEHQARTDSLTGLLNRRALELVAAQYAAHDSASLVLIDVDRFKQINDRHG 480 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+ ++ + + + R GGEEFA EAA LA LR I + Sbjct: 481 HAAGDQVLRDIAAMMRALVPPEGVLARFGGEEFALLLPHGRPGEAAALAETLRAEIASRP 540 Query: 208 INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + +S + +T S G+A R + + AD A+Y AK GRN C + + Sbjct: 541 VFLSGSTQLCVTASFGVAIGRGGERHWQRLFGAADAAMYRAKAEGRN---CVREAQRE 595 >gi|301305873|ref|ZP_07211957.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1] gi|300838878|gb|EFK66638.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1] Length = 293 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 6/158 (3%) Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S E L++ + DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T++AG++ +EP+ +I RAD+A+Y K++GRNR + Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM 285 >gi|194367772|ref|YP_002030382.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] gi|194350576|gb|ACF53699.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] Length = 426 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 40/236 (16%) Query: 41 TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI 100 T + +A + L++ + P L+ +L+ LS +LLL + G++L+E F Sbjct: 196 TAMLLALLCLWW--MLPRVFLQPVLLPALSCA------ALLL--VLGAMLQESF------ 239 Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 ++ D L+GL AF +L SI D+D+FK ND GH GD V+ ++ Sbjct: 240 -HMAFRDELTGLPGRRAFNETLQRARGTYSIAMVDVDHFKSFNDTHGHDTGDDVLRLVAS 298 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---------- 210 +L V G R GGEEFA L LR+ IE++++ + Sbjct: 299 RLAKV-GDGGRAFRYGGEEFAVVFLDRPAAACVDAVEALRQSIEDTRMQLRDRSTRSRDD 357 Query: 211 ----------SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 SG + +T+S G+A+ R + P + ++ ADQALY AK GRN+V Sbjct: 358 EAGRQQRGRGGSGQVVQVTVSIGLADSRVDQRP-TAVVKAADQALYAAKDGGRNQV 412 >gi|117618921|ref|YP_855815.1| response regulator PleD (Stalked cell differentiation-controllingprotein) [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560328|gb|ABK37276.1| response regulator PleD (Stalked cell differentiation-controllingprotein) [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 379 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 12/171 (7%) Query: 98 NRISQLSR---IDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFG 147 N + QL R D L+G++N + L + +++ D+D FK+IND FG Sbjct: 191 NMLLQLYRESTTDELTGMMNRRLLMKQLEKARMSMIRKQAPFAVLLLDLDRFKRINDTFG 250 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENS 206 H GD V+ ++ L M +GR GGEEFA +E +A +A LR +E Sbjct: 251 HLAGDAVLKEVAATLAEQLEPGMVLGRYGGEEFAILLPNCAELAQAKRVAERLRVAVEAR 310 Query: 207 QI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +S + +T+S G+ E + ++ RAD+ LY+AK +GRN VV Sbjct: 311 LVKSPTSDELLEVTVSIGLTLALRGEGVEDLLNRADECLYMAKMAGRNCVV 361 >gi|90411613|ref|ZP_01219623.1| hypothetical GGDEF family protein [Photobacterium profundum 3TCK] gi|90327503|gb|EAS43856.1| hypothetical GGDEF family protein [Photobacterium profundum 3TCK] Length = 339 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 80/155 (51%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+G+LN AF Y N LS++ DID FK NDNFGH +GD+V+ ++ +L Sbjct: 182 DALTGILNRRAFERDFQHYIENNTPLSLILLDIDKFKDFNDNFGHLMGDQVLKTIARRLK 241 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIH-ITIS 221 R GGEEFA + A A R+ E S I+ +G ++ IT S Sbjct: 242 ESCRDYAQAYRFGGEEFAIILPHKMKASARQQAETFRRAFERISVIDKKTGQRVNSITAS 301 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE+ E +I RAD + AK+ GRNRV+ Sbjct: 302 FGVAEKQPNESGECLIDRADTFMNQAKQLGRNRVL 336 >gi|120598163|ref|YP_962737.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|120558256|gb|ABM24183.1| diguanylate cyclase [Shewanella sp. W3-18-1] Length = 578 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++ D L+G N + + + LSIV FDID FKQ ND +GH +G Sbjct: 400 QVKAMAETDGLTGCYNRRYLDNQIEKELLYANDHQVPLSIVMFDIDNFKQFNDRYGHVIG 459 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D+ + + + + P + R GGEEF ++A +A LR+ I + +I Sbjct: 460 DQCLKQIVNAAKSILQRPTDTLARYGGEEFMILLPSRHLEDAYKIAEHLRETIIDLKIPH 519 Query: 211 SSGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDI 261 P I TISAGI EP+ T +I RAD+ALY AK +GRNR +I Sbjct: 520 EDSPHAGIVTISAGITCWHPPEPLDTNSLIKRADEALYHAKLTGRNRTETLINI 573 >gi|262274946|ref|ZP_06052757.1| sensory box/GGDEF family protein [Grimontia hollisae CIP 101886] gi|262221509|gb|EEY72823.1| sensory box/GGDEF family protein [Grimontia hollisae CIP 101886] Length = 580 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS +D L+ + N +F L E LS++F DIDYFK NDN+GH GD Sbjct: 405 LEELSFVDGLTKVANRRSFDEQLVKMWHAHIREKEPLSLIFCDIDYFKPYNDNYGHQQGD 464 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + + ++D V P+ V R GGEEFA ++E+ ++A ++ + ++ + I + Sbjct: 465 EALRQVADVFQRVTRRPLDAVARYGGEEFAILLPNTTEEGVLVVAQNIAEELQKAAIPHA 524 Query: 212 -SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S + IT+S GIA + ++ ADQALY AK +GRN++V Sbjct: 525 FSKVADRITLSQGIATLRPVAGQDYGDLVSLADQALYCAKNAGRNQIVS 573 >gi|134099798|ref|YP_001105459.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea NRRL 2338] gi|291005611|ref|ZP_06563584.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea NRRL 2338] gi|133912421|emb|CAM02534.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea NRRL 2338] Length = 516 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 30/237 (12%) Query: 28 MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87 ++ ++ + IAT +FIA L + LT F E + V + LVI +LL Sbjct: 285 VVQLAVPYLPLIATALFIAAGLLAGLTLTRFQ--ECVFVALMGLVISRQLATLL------ 336 Query: 88 SILKELFISYNRISQLSRI----DCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYF 139 NR+ + + D L+G+ N + F+ SL + + F D+D F Sbjct: 337 --------ENNRLLRRAEYEALHDPLTGVANRTLFLHWLERSLADCRRPIVLAFCDLDDF 388 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K++NDNFGH GD V+ + +L G V RLGG+EFA E L Sbjct: 389 KEVNDNFGHAAGDLVLTSAARRLTRCAGADDLVARLGGDEFAVVLHNVHEPLEEAGQRLL 448 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRN 253 R + E +N G + ++ S G+ +P++ T++ AD A+YVAK+ G+N Sbjct: 449 RALQEPHDLN---GRPLVVSASVGMTYLSPDQPVAGTDTLMRWADSAMYVAKRRGKN 502 >gi|116251496|ref|YP_767334.1| response regulator PleD [Rhizobium leguminosarum bv. viciae 3841] gi|115256144|emb|CAK07225.1| putative two-component response regulator with GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841] Length = 457 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 11/176 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 L S + +L+ D L+GL N + L + LS++ DID FK +ND Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKHVND 339 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ S+++ R GGEEF +S + AA +A LR IE Sbjct: 340 TYGHDGGDEVLREFSNRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAAAVAERLRAAIE 399 Query: 205 NSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 N+ + +G ++++T S GIA R P ++ +AD ALY AK +GRNRVV Sbjct: 400 NAPFMLKHAGEALNVTASFGIASRITSVLTP-DQLMKQADLALYEAKNTGRNRVVA 454 >gi|83593563|ref|YP_427315.1| response regulator receiver modulated diguanylate cyclase [Rhodospirillum rubrum ATCC 11170] gi|83576477|gb|ABC23028.1| response regulator receiver modulated diguanylate cyclase [Rhodospirillum rubrum ATCC 11170] Length = 550 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 11/167 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++++ R D LS L HS + L G LS D+D+FK IN GH GD Sbjct: 381 LAEMMRRDGLSRLFTHSTILDGLEREGARAGRTGAPLSFALLDLDHFKAINQTHGHATGD 440 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI L+ + +GR GGEEFA G+ ++A + DLR + + + Sbjct: 441 QVIVTLARVMRRALRGCDLLGRCGGEEFAVILPGTPAEQAVGVIEDLRALFRGQTLRAPT 500 Query: 213 GPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256 G + T SAG+A P + + AD+AL AK GR+RVV Sbjct: 501 G-EVRATFSAGVAGTPAGAPPLSATALFTAADKALAEAKARGRDRVV 546 >gi|52840485|ref|YP_094284.1| sensor histidine kinase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627596|gb|AAU26337.1| sensor histidine kinase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 709 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 71/134 (52%), Gaps = 3/134 (2%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +I+ D+D+FK+IND FGH GD V+ L L R GGEEF + Sbjct: 575 AILMLDLDHFKKINDTFGHDAGDLVLKELGQILNNDIRLGDIAARYGGEEFVLLLYDINA 634 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A + A +LR I N Q+ + P IT S GI+ K P + +I AD+ALY A Sbjct: 635 QAAKMKAENLRSAISNLQVKYGAQPVGQITASIGISVYPDDAKSP-AEVIEAADKALYQA 693 Query: 248 KKSGRNRVVCFSDI 261 K GRN+V+ FS+I Sbjct: 694 KNKGRNKVILFSEI 707 >gi|54293235|ref|YP_125650.1| hypothetical protein lpl0283 [Legionella pneumophila str. Lens] gi|53753067|emb|CAH14514.1| hypothetical protein lpl0283 [Legionella pneumophila str. Lens] Length = 709 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 70/134 (52%), Gaps = 3/134 (2%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +I+ D+D+FK+IND FGH GD V+ L L R GGEEF Sbjct: 575 AILMLDLDHFKKINDTFGHDAGDLVLKELGQILNSDIRLGDIAARYGGEEFVLLLYDIDA 634 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A + A +LR I N Q+ + P IT S GI+ K P + +I AD+ALY A Sbjct: 635 QAAKMKAENLRSAISNLQVKYGAQPVGQITASIGISVYPDDAKSP-AEVIEAADKALYQA 693 Query: 248 KKSGRNRVVCFSDI 261 K GRN+V+ FS+I Sbjct: 694 KNKGRNKVILFSEI 707 >gi|331683006|ref|ZP_08383614.1| putative GGDEF domain protein [Escherichia coli H299] gi|331079827|gb|EGI51017.1| putative GGDEF domain protein [Escherichia coli H299] Length = 298 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGIRICQLVDNHAIKHSEG-HINI 249 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293 >gi|293405020|ref|ZP_06649012.1| hypothetical protein ECGG_00352 [Escherichia coli FVEC1412] gi|298380669|ref|ZP_06990268.1| ydeH protein [Escherichia coli FVEC1302] gi|291427228|gb|EFF00255.1| hypothetical protein ECGG_00352 [Escherichia coli FVEC1412] gi|298278111|gb|EFI19625.1| ydeH protein [Escherichia coli FVEC1302] gi|323964115|gb|EGB59602.1| GGDEF domain-containing protein [Escherichia coli M863] Length = 298 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGIRICQLVDNHAITHSEG-HINI 249 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293 >gi|209548893|ref|YP_002280810.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534649|gb|ACI54584.1| response regulator receiver modulated diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 457 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 11/178 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 L S + +L+ D L+GL N + L + LS++ DID FKQ+ND Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKQVND 339 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ ++++ R GGEEF +S + AA +A LR +E Sbjct: 340 TYGHDGGDEVLREFANRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAAAVAERLRAAVE 399 Query: 205 NSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259 N+ + +G ++++T S GIA R P ++ +AD ALY AK +GRNRVV + Sbjct: 400 NAPFLLKHAGEALNVTASFGIASRIGSVLTP-DQLMKQADLALYEAKNTGRNRVVAAA 456 >gi|220927155|ref|YP_002502457.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium nodulans ORS 2060] gi|219951762|gb|ACL62154.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium nodulans ORS 2060] Length = 457 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 16/194 (8%) Query: 81 LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSL-GSYNE------K 128 L+ I + ++ F R S +L+ D L+GL N F S L G + E Sbjct: 264 LVARIRTQVRRKRFAHALRESVQASMELAVTDGLTGLHNRRYFDSHLAGLFREAVLRGRP 323 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 ++++ DID FK IND FGH GD+V+ +D++ V R GGEE + Sbjct: 324 IALLLLDIDRFKTINDGFGHDAGDEVLRQFADRIRAHTRGIDIVARFGGEEIVVVVPDAG 383 Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPI--STIIYRADQALY 245 A +A +R+ IE + I G +I +T+S G+A R H + + ++ RAD ALY Sbjct: 384 LDGAQQVAERIRERIEAAPFTIHGGTRTIDVTVSVGVAVR-HPDDAGPADLLKRADVALY 442 Query: 246 VAKKSGRNRVVCFS 259 AK+ GRNRVV + Sbjct: 443 QAKQEGRNRVVAAA 456 >gi|118578561|ref|YP_899811.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] gi|118501271|gb|ABK97753.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] Length = 304 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 10/160 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+G+ N FI+ + + LSI+ DID+FK +ND FGH GD+V+ Sbjct: 142 ARTDHLTGIANRWEFINRFNTEKGRAERHGTPLSIIIADIDHFKSVNDTFGHNAGDRVLR 201 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPS 215 +++ + GR GGEEF ++ AA +A LR+ + S+++I G S Sbjct: 202 SVANAISSSIRVEDACGRWGGEEFMLLLPDTNLDAAARVAEKLRQAV--SELSIPWEGES 259 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I +T+S G+ + + I D ALY AK GRNRV Sbjct: 260 IAVTLSMGVGQFRPGMTLDECIQPVDHALYRAKTGGRNRV 299 >gi|313110553|ref|ZP_07796438.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|310882940|gb|EFQ41534.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 401 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 16/197 (8%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLG 123 LV++ + +L Y+ +E F+ + ++ D L+GL+N + G Sbjct: 199 GLVVLICSFAL---YLQDYAQREQFLGRRLLGMMAEQDSLTGLVNRRYYELLAQRALEQG 255 Query: 124 SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181 + EK ++++ D+D FK ND++GHP GD + L L P+ RLGGEEFA Sbjct: 256 AREEKGVALILVDVDDFKAYNDHYGHPAGDAALRQLGVVLRQGARRPLDIAARLGGEEFA 315 Query: 182 AAALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIY 238 S E +A LR+ +E + S+GP +TIS G+A + + Sbjct: 316 VLLYDSEEGNTLAIAERLRQAVEALGIEHLGSSAGPC--LTISLGVAYSTSGMGLDALYR 373 Query: 239 RADQALYVAKKSGRNRV 255 AD+ALY AK +GRN V Sbjct: 374 EADRALYEAKDAGRNAV 390 >gi|237811708|ref|YP_002896159.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346] gi|237504258|gb|ACQ96576.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346] Length = 466 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141 +L+EL + ++ L+ D L+G N FI + S S++ D+D FK Sbjct: 290 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 349 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 INDN+GH VGD V+ Q + + R+GGEEF A+ +A +R Sbjct: 350 INDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 409 Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 410 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 465 >gi|218705019|ref|YP_002412538.1| hypothetical protein ECUMN_1803 [Escherichia coli UMN026] gi|293409883|ref|ZP_06653459.1| conserved hypothetical protein [Escherichia coli B354] gi|300897826|ref|ZP_07116216.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1] gi|218432116|emb|CAR13004.1| conserved hypothetical protein [Escherichia coli UMN026] gi|284921422|emb|CBG34490.1| putative signal transduction protein [Escherichia coli 042] gi|291470351|gb|EFF12835.1| conserved hypothetical protein [Escherichia coli B354] gi|300358455|gb|EFJ74325.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1] gi|327254193|gb|EGE65822.1| hypothetical protein ECSTEC7V_1624 [Escherichia coli STEC_7v] Length = 296 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGIRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|254457006|ref|ZP_05070434.1| diguanylate cyclase with PAS/PAC sensor [Campylobacterales bacterium GD 1] gi|207085798|gb|EDZ63082.1| diguanylate cyclase with PAS/PAC sensor [Campylobacterales bacterium GD 1] Length = 598 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 11/178 (6%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDID 137 IS + ++ RI +LS D L+ L N + +++ G YN S++ DID Sbjct: 420 ISYTAIRHDITDKKRIEELSITDRLTQLYNRLKLDEIFAMKLATAGRYNTNFSVIIIDID 479 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 YFK +ND +GH GD V+ ++ + VGR GGEEF + + A L+ Sbjct: 480 YFKLVNDTWGHQAGDDVLREFAEIIKNNARETDIVGRWGGEEFLILSSDTDLDGAIKLSE 539 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 LR+++ S N S + T S G++ + T++ RAD+ALY AK++GRNRV Sbjct: 540 KLREMV--SLFNFSFAG--YKTASFGVSSYHPGDDEKTMVKRADEALYRAKENGRNRV 593 >gi|77361562|ref|YP_341137.1| hypothetical protein PSHAa2647 [Pseudoalteromonas haloplanktis TAC125] gi|76876473|emb|CAI87695.1| conserved protein of unknown function with GGDEF domain [Pseudoalteromonas haloplanktis TAC125] Length = 368 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 102/210 (48%), Gaps = 28/210 (13%) Query: 74 ISITISLLLGYISGSIL---------KELFISYNRIS-------QLSRIDCLSGLLNHSA 117 I+I +S L +I SI K F +Y+ +S QL+ D L+GL N Sbjct: 147 ITIGLSALFNFIEVSIAHVLLFRFYEKTRFSAYSHLSKRNAEIKQLAETDKLTGLYNRQK 206 Query: 118 F---ISSLGSYN---EKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 F +S L S N K +IV DID+FK++ND +GH GD V++ ++ L Sbjct: 207 FDFELSQLLSENNNERKSNIVMICDIDHFKKVNDTYGHLAGDNVLSEFANILQNKLTNSA 266 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 + R GGEEF SS A A +LR I I+ + +TIS GIA+ Sbjct: 267 LIARWGGEEFTIILRDSSLDNAINEAEELRAFIATHLIDNRA-----LTISIGIAKAHVD 321 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ RAD+ALY AK GR++V SD Sbjct: 322 DTALHLLERADKALYKAKLQGRDQVCVASD 351 >gi|78059845|ref|YP_366420.1| diguanylate cyclase [Burkholderia sp. 383] gi|77964395|gb|ABB05776.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383] Length = 467 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 8/176 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L+ L + ++ L+ D L+G N FI S+ + S++ D+D+FK I Sbjct: 291 LQALQRTNEKLEHLAATDPLTGATNRRQFIESVEAEIHRAKRNGAPFSLLALDLDHFKAI 350 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND++GH GD+V+ D+ V V R+GGEEF ++ A + +R Sbjct: 351 NDSYGHQAGDQVLQRFVDKCVDAIRPYDGVARVGGEEFMVLLPQAALDTAQSIGERIRAA 410 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I + G I +T+S G +E E I I+ +AD+ LY AK GRN+VV Sbjct: 411 IAGAPFEAGIGEPIKVTVSVGASEFGRDGETIDAILRKADERLYRAKHLGRNQVVA 466 >gi|21233187|ref|NP_639104.1| GGDEF family protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770127|ref|YP_244889.1| GGDEF family protein [Xanthomonas campestris pv. campestris str. 8004] gi|188993335|ref|YP_001905345.1| diguanylate cyclase domain protein [Xanthomonas campestris pv. campestris str. B100] gi|21115037|gb|AAM43016.1| GGDEF family protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575459|gb|AAY50869.1| GGDEF family protein [Xanthomonas campestris pv. campestris str. 8004] gi|167735095|emb|CAP53307.1| diguanylate cyclase domain protein [Xanthomonas campestris pv. campestris] Length = 483 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 17/169 (10%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N F + ++ S++ D+DYFKQ ND +GHP GD+ + Sbjct: 312 ARNDHLTGLANRRGFDRAFERLLPAVRDGTRGASVLMLDVDYFKQYNDRYGHPQGDQCLR 371 Query: 157 FLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 ++ L VV G + V R GGEEFA + AA +A L++ + I+ + P Sbjct: 372 DIAAALRSVVTRGEDV-VARYGGEEFALLLPDTDLPGAAEVARRLQERLAAMPISHAGSP 430 Query: 215 SIHITISAGI----AERCHKEPI---STIIYRADQALYVAKKSGRNRVV 256 IT+S G+ + C + ++ RAD+ALY AK GRNRV Sbjct: 431 CARITVSIGVTALQPQECQVQDARVREAVMARADRALYQAKNQGRNRVA 479 >gi|330505540|ref|YP_004382409.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328919826|gb|AEB60657.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 558 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 9/160 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LSR D L+GLL H + ++ S+V DID+FK++ND GH GD VI Sbjct: 391 LSR-DSLTGLLKHGDIKEQVAIELERALRTGDRASVVMLDIDHFKRVNDEHGHAAGDNVI 449 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L++ L +GR GGEEF A + Q+A + +++R+ + I+ G Sbjct: 450 RALANLLRQRLRRIDSLGRYGGEEFLAVLPDCTPQQAKQIVDEIRERFAELRF-IADGGE 508 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+SAG+A + RAD+ALY AK GRN+V Sbjct: 509 FSCTLSAGVAGTDVHSQAEQLRERADKALYAAKHGGRNQV 548 >gi|330502303|ref|YP_004379172.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328916589|gb|AEB57420.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 489 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 8/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 RI+ L+ D L+ L N F + + L V D+D FKQIND GH Sbjct: 322 QRIAALATTDSLTNLPNRRGFELHVEQALQEAQRDSSPLCAVMLDLDNFKQINDRHGHLA 381 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ +++L + R GGEEF + A LA LR+ + + + Sbjct: 382 GDEVLRSFAERLRAALRQSDILCRWGGEEFILLLKNTDRHAAHELAEKLRQHCADQRYPM 441 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G ++ +T+S G+++ E + ++ R D+ALY AK++GR+RV Sbjct: 442 -DGEALQVTVSLGLSQWQPGEALHDLLSRTDRALYRAKQAGRDRV 485 >gi|268679957|ref|YP_003304388.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268617988|gb|ACZ12353.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 259 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 10/168 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 SY +I +LS D L+ L N F++ +K L +V D+D FK INDNFGH Sbjct: 86 SYLQIEELSHFDGLTKLYNRLMFVTLFQKEIQKVKRSKKCLFLVIIDLDDFKSINDNFGH 145 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD I + L + +GR GG+EF + + A+ N + + Sbjct: 146 LIGDLAIKTTASTLKTILRNSDTIGRFGGDEFVICIVDHDKDAASHTVNRILNEFNQKSL 205 Query: 209 NISSGPS---IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I+ +HI +S G ++ +T++ RADQALY++K++G+N Sbjct: 206 PITRNDQPHELHINLSIGYTMYKIEDDFTTMLQRADQALYISKEAGKN 253 >gi|207728382|ref|YP_002256776.1| signal transduction protein ggdef domain [Ralstonia solanacearum MolK2] gi|206591628|emb|CAQ57240.1| signal transduction protein ggdef domain [Ralstonia solanacearum MolK2] Length = 461 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 12/199 (6%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 LV++ ++L + Y+ L+ R ++L+ D L+GL N A L + Sbjct: 263 LVVLFNVVTLAMAYLFAQHLERRIEEQRRHAELAATDALTGLANRRALDERLDAEWRRAA 322 Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAA 182 + LS++ D+D+FK ND +GHP GD + ++ + P R GGEEF Sbjct: 323 RERQPLSVLMIDVDHFKAYNDQYGHPDGDVALQAVARCIQANLRRPGDLAARYGGEEFCV 382 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE----RCHKEPISTIIY 238 GS A ++A +R I+ I + + +T+S G A ++ +T+ Sbjct: 383 VLPGSDLGSANVVAETIRHAIQALDIPHARSDAAVLTVSIGAASGTPAASGEQRTATLTK 442 Query: 239 RADQALYVAKKSGRNRVVC 257 AD LY AK SGRNR V Sbjct: 443 AADAQLYRAKTSGRNRTVA 461 >gi|119947315|ref|YP_944995.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] gi|119865919|gb|ABM05396.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] Length = 727 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 24/174 (13%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148 + ++++L++ DCL+GL N + F S L KL+++F D+D FKQ+ND+ GH Sbjct: 267 TEQQLTRLAQYDCLTGLPNRALFTSLLSQAISRSDRRKNKLALLFLDLDRFKQVNDSLGH 326 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIE-- 204 VGD ++ ++ +L + V RLGG+EF + S +AA LA +K+I Sbjct: 327 DVGDLLLQQVAQRLQLATLEGGTVSRLGGDEFMVILEEVNSESHKAAKLA---QKMITSL 383 Query: 205 NSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ NI G + I+ S GIA +C I +++ RAD A+Y AK+ GRN Sbjct: 384 DAPFNI-LGREVLISTSIGIALCSGSTQC----IDSLLKRADMAMYRAKEQGRN 432 >gi|67643392|ref|ZP_00442138.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4] gi|124384520|ref|YP_001026640.1| GGDEF domain-containing protein [Burkholderia mallei NCTC 10229] gi|126448347|ref|YP_001080078.1| GGDEF domain-containing protein [Burkholderia mallei NCTC 10247] gi|167893684|ref|ZP_02481086.1| diguanylate cyclase [Burkholderia pseudomallei 7894] gi|167910371|ref|ZP_02497462.1| diguanylate cyclase [Burkholderia pseudomallei 112] gi|254177876|ref|ZP_04884531.1| GGDEF domain protein [Burkholderia mallei ATCC 10399] gi|254197206|ref|ZP_04903628.1| diguanylate cyclase [Burkholderia pseudomallei S13] gi|254201642|ref|ZP_04908006.1| diguanylate cyclase [Burkholderia mallei FMH] gi|254206974|ref|ZP_04913325.1| diguanylate cyclase [Burkholderia mallei JHU] gi|254261114|ref|ZP_04952168.1| diguanylate cyclase [Burkholderia pseudomallei 1710a] gi|254358890|ref|ZP_04975163.1| diguanylate cyclase [Burkholderia mallei 2002721280] gi|124292540|gb|ABN01809.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia mallei NCTC 10229] gi|126241217|gb|ABO04310.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia mallei NCTC 10247] gi|147747536|gb|EDK54612.1| diguanylate cyclase [Burkholderia mallei FMH] gi|147752516|gb|EDK59582.1| diguanylate cyclase [Burkholderia mallei JHU] gi|148028017|gb|EDK86038.1| diguanylate cyclase [Burkholderia mallei 2002721280] gi|160698915|gb|EDP88885.1| GGDEF domain protein [Burkholderia mallei ATCC 10399] gi|169653947|gb|EDS86640.1| diguanylate cyclase [Burkholderia pseudomallei S13] gi|238524736|gb|EEP88167.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4] gi|254219803|gb|EET09187.1| diguanylate cyclase [Burkholderia pseudomallei 1710a] Length = 454 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141 +L+EL + ++ L+ D L+G N FI + S S++ D+D FK Sbjct: 278 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 337 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 INDN+GH VGD V+ Q + + R+GGEEF A+ +A +R Sbjct: 338 INDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 397 Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 398 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453 >gi|320353862|ref|YP_004195201.1| PAS/PAC sensor-containing diguanylate cyclase and hemerythrin-like metal-binding domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122364|gb|ADW17910.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like metal-binding domain protein [Desulfobulbus propionicus DSM 2032] Length = 817 Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 6/134 (4%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + + LS + DID+FK+IND GH +GD+V+ +S + + + RLGGEEF Sbjct: 515 FKQPLSFLLVDIDWFKRINDAHGHDIGDEVLKTMSRACMGLLRSIDLFSRLGGEEFGILL 574 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI---IYRAD 241 + + + + A LR +E ++ GP I T+S G+A + + T+ I +AD Sbjct: 575 VNTGREGGHVFAERLRHHLEQLEVACPGGP-IRFTVSIGLA--VSDDTVGTVNDLIKQAD 631 Query: 242 QALYVAKKSGRNRV 255 ALYVAK +GRNRV Sbjct: 632 LALYVAKANGRNRV 645 >gi|241762869|ref|ZP_04760932.1| diguanylate cyclase [Acidovorax delafieldii 2AN] gi|241368044|gb|EER62249.1| diguanylate cyclase [Acidovorax delafieldii 2AN] Length = 413 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 97/200 (48%), Gaps = 18/200 (9%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLG 123 LV + L+ +++ +SL S++ E NR + L+ D L+ L+N F L Sbjct: 218 LVGSFLLLFVALNLSL------SSLVIEPMARLNRKLEDLATKDFLTDLVNRRRFFERLE 271 Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 + LS+V FDID+FK+IND FGH GD V+ + ++ + + R G Sbjct: 272 AEMANTRIKKGSLSVVMFDIDFFKRINDTFGHDSGDVVLKHTALRVRELLRSSDCAARFG 331 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236 GEEF + A +A +R I + + H++ S G+A H+E + Sbjct: 332 GEEFIILLKETPLDAAMAMAEAVRARIAGAPFDAVG----HVSASFGVASWDHQEDSHAL 387 Query: 237 IYRADQALYVAKKSGRNRVV 256 I RAD ALYVAK GRN VV Sbjct: 388 IKRADAALYVAKSRGRNCVV 407 >gi|310780162|ref|YP_003968494.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] gi|309749485|gb|ADO84146.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] Length = 540 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 8/162 (4%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N F + + Y+ ++ DID+FK+ ND +GH GD V+ Sbjct: 371 DFLTGSYNRKGFTKIANLELERMKRYDIDACVMMMDIDFFKKFNDTYGHACGDFVLRSFV 430 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + +GR GGEEF + + A + A +RK++E ++ S++IT Sbjct: 431 RVVTKNVRLSDIIGRWGGEEFLVLLPETDYKGALLAAEKVRKMVER-EVFYYHKQSLNIT 489 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 ++ G++ ++P+ + AD A+Y K+ GRNRVV F DI Sbjct: 490 VTIGVSTLNVRKPLEKAVAEADAAMYRGKEDGRNRVVGFQDI 531 >gi|297538018|ref|YP_003673787.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297257365|gb|ADI29210.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] Length = 710 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 12/163 (7%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153 S+L+ +D L+ L N A + L + + L++ F D+D FKQIND GH VGD Sbjct: 266 SRLALVDTLTQLPNRRALMQHLEAATRRCDRNGASLAVAFIDVDNFKQINDTLGHQVGDL 325 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINIS 211 + ++ +LV V R+GG+EF A + S E ++ + + E+ IN S Sbjct: 326 ALQKVARRLVTAVRGCDEVARIGGDEFIAIIEEVDSYEDCITVIERMVSAVRESCTINHS 385 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +H++ISAG+A I +I AD A+Y AKK G+N+ Sbjct: 386 ---EVHLSISAGVAIYPKDGNIQQLISAADTAMYRAKKDGKNQ 425 >gi|227113168|ref|ZP_03826824.1| putative signaling membrane protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 255 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 90/182 (49%), Gaps = 12/182 (6%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134 LGY++ + +L + ++S D +S L N + L Y ++V F Sbjct: 73 LGYVTYATALKLAEHKRMLMEVSIHDGMSSLYNRHHWERLLKHEYDICQRYKRTATLVLF 132 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK NDNFGH VGD+ I L+ +L F +GR GG+EFA +S EA Sbjct: 133 DIDHFKAFNDNFGHNVGDQAILLLARELTSGFRETDVIGRFGGDEFAVILPQTSAGEALD 192 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGR 252 N +R+ + +N + P + + +S GIAE E + + + AD ALY AK GR Sbjct: 193 AVNRIRESLSLKFLNQT--PQLAVFVSVGIAE-ISPEMVQYMDWLKAADMALYRAKNKGR 249 Query: 253 NR 254 R Sbjct: 250 RR 251 >gi|170721603|ref|YP_001749291.1| diguanylate cyclase [Pseudomonas putida W619] gi|169759606|gb|ACA72922.1| diguanylate cyclase [Pseudomonas putida W619] Length = 532 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 16/188 (8%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKL 129 + +I +LL G +L+E F ++ Q ++ D L+GL N A + +L + Sbjct: 340 VAAIRRALLTGE---QLLQEKF---GKLRQQAQSDALTGLANRRAMQLALDALMQSSRAF 393 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DID+FK++ND FGH GD+V+ L++ L R+GGEEF + Sbjct: 394 AVLALDIDHFKRVNDTFGHDAGDEVLKHLAELLRHNSRQDDLPCRVGGEEFTMLLPDTGL 453 Query: 190 QEAAILANDLRKIIENSQINISSGPSI-HITISAGIA-ERCHKEPISTIIYRADQALYVA 247 +A +A +R +E + P + +T+S G+A R + +++ +AD+ LY A Sbjct: 454 ADARRIAERIRSAVEQ-----ADSPHVGKLTVSIGVACRRPDTQQAGSVLKQADEQLYKA 508 Query: 248 KKSGRNRV 255 K +GRNRV Sbjct: 509 KHNGRNRV 516 >gi|326386387|ref|ZP_08208010.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370] gi|326209048|gb|EGD59842.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370] Length = 505 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 12/163 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+R D L+GL N + ++ + + +++ D+D FK IND GH VGD+V Sbjct: 315 ELARRDPLTGLRNRRGLVEAVDAMIGQGEDEHSPFALLLVDVDKFKTINDTHGHEVGDQV 374 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L+ +L G V R GGEEFA +G S A+ +R+ + GP Sbjct: 375 LCRLAGRLSRWDGAMCAVARFGGEEFAMVVVGLSGPVLTQFADRVRQEVA----ECDHGP 430 Query: 215 SIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ +T+S GIAE ++ AD+ALY AK++GRN V+ Sbjct: 431 ALRAVTVSIGIAEARGAADFQSLYRLADEALYRAKQAGRNCVM 473 >gi|294490786|gb|ADE89542.1| diguanylate cyclase [Escherichia coli IHE3034] gi|307626569|gb|ADN70873.1| putative diguanylate cyclase [Escherichia coli UM146] gi|323952448|gb|EGB48321.1| diguanylate cyclase domain-containing protein [Escherichia coli H252] Length = 558 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|288956938|ref|YP_003447279.1| GGDEF domain-containing protein [Azospirillum sp. B510] gi|288909246|dbj|BAI70735.1| GGDEF domain-containing protein [Azospirillum sp. B510] Length = 385 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 14/224 (6%) Query: 43 IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102 +F A + LF P+ LE+ + ++ + I++L+ I+ + +++ Sbjct: 170 LFGAGVILFVADFVPWLALEFFVQ-----ILGNFAIAILIYNIATDR------AERKLAL 218 Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQ 161 ++ +D L+G+ N S+ +F+ D+D+FK+IND FGH GD V+ ++ Sbjct: 219 MAELDSLTGIGNRRWLEKMAPSHLSPGDTIFYIDLDHFKRINDRFGHAAGDTVLVAVAAT 278 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L + + R+GGEEF EA +A +R+ I+ P + +T S Sbjct: 279 LRNLKRPEDVLARMGGEEFLLFLAELRVSEALTIAERIREAIQAIPFQYQGIP-LGVTAS 337 Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G+A+ + EP +++ AD ALY AK GRNRVV S + + Sbjct: 338 IGVAQVSRQGEPWPELVHAADMALYEAKHGGRNRVVHASQVSQD 381 >gi|284046377|ref|YP_003396717.1| diguanylate cyclase [Conexibacter woesei DSM 14684] gi|283950598|gb|ADB53342.1| diguanylate cyclase [Conexibacter woesei DSM 14684] Length = 530 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 15/176 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFK 140 S L+ L ++ +R + D L+GL N A +L + +E+ L++V D+D+FK Sbjct: 343 SGLRTLALAQSR----AMTDALTGLPNRWALQDALKRMLAQAARSERPLALVLLDLDHFK 398 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND +GH GD +A + D L+ R GGEEFA +S + A +A LR Sbjct: 399 QLNDTYGHDAGDTALAAVGDALLTGLRESDMAARSGGEEFAVLLPDTSLEGAVAVAEQLR 458 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I + + P +T S G+A H ++ AD+ALY AK++GRNRV Sbjct: 459 AAIAAVDLPL---PGASLTASFGVAVLPLHAVDADGLMRVADRALYAAKRAGRNRV 511 >gi|261253438|ref|ZP_05946011.1| GGDEF family protein [Vibrio orientalis CIP 102891] gi|260936829|gb|EEX92818.1| GGDEF family protein [Vibrio orientalis CIP 102891] Length = 269 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 93/169 (55%), Gaps = 13/169 (7%) Query: 95 ISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + ++ +L+ D ++GLLN AF+ ++ +N+ +++ FDID FK INDN+GH VG Sbjct: 106 VEHDYFKELAAKDPMTGLLNRRGLKAFLKTV-QHNDYVALAVFDIDNFKAINDNYGHDVG 164 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D VI+ ++DQ+ + R+GGEEF G+ + A+L + ++ I + Sbjct: 165 DVVISHVADQITINIRHSDVAARIGGEEFVIYMSGN---DKALLQKGMSRV--QQAIVAT 219 Query: 212 SGPSIH--ITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S ++ TIS G I + + T+ AD+ LY AK +G++++V Sbjct: 220 SADAVENGFTISGGVEIVTKSEERGFDTLFKAADEKLYQAKTTGKDKLV 268 >gi|260598464|ref|YP_003211035.1| putative diguanylate cyclase YedQ [Cronobacter turicensis z3032] gi|260217641|emb|CBA31947.1| Cellulose synthesis regulatory protein [Cronobacter turicensis z3032] Length = 524 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 16/163 (9%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N AF + + S++ D+D+FK IND +GH GDKV+ + + Sbjct: 363 DTLTRLYNRGAFFERARLAAKTCDAQQAPFSVIQLDLDHFKSINDRYGHQAGDKVLTWAA 422 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L GR+GGEEF G+ + A +A +R+ I + +I + +I I+ Sbjct: 423 GMLSRSLRAEDIAGRVGGEEFCIILPGTPSEGARQVAERIRQRINSQEILVRPDTTIRIS 482 Query: 220 ISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVC 257 +S GI+E E + +I AD+ LY+AK+ GRN +VC Sbjct: 483 VSVGISEALRDGDYDFEHLQSI---ADRRLYLAKQRGRN-LVC 521 >gi|253999666|ref|YP_003051729.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253986345|gb|ACT51202.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] Length = 765 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 97/199 (48%), Gaps = 24/199 (12%) Query: 77 TISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128 TI +L GY + + ++ S I + + D L+GL N F L + + Sbjct: 292 TIIVLRGYRLKREVARQAAASQKLIWKQANYDFLTGLPNRPMFHKQLAEEIHKSLQHQQP 351 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALG 186 L ++F D+D FKQIND GH +GDK++ ++ V + RLGG+EF + + Sbjct: 352 LVLMFLDLDNFKQINDQLGHSIGDKLLVETGARIAAVARDCTLLARLGGDEFTIVLSNVQ 411 Query: 187 SSEQEAAILANDLRKI-----IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240 + +Q + LR++ IEN +++T S GIA H + T++ A Sbjct: 412 NQQQVEWLCERILRQVSLPFTIENH--------VVYVTTSIGIASFPEHSRDVETLMKYA 463 Query: 241 DQALYVAKKSGRNRVVCFS 259 DQA+Y AK+ GRNR FS Sbjct: 464 DQAMYEAKRLGRNRYQFFS 482 >gi|94268924|ref|ZP_01291323.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93451412|gb|EAT02262.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] Length = 333 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 20/184 (10%) Query: 90 LKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141 LKE NR +++LS D L+GL N +F +L + + L+++ DID FKQ Sbjct: 149 LKEQLEEANRKLNELSLTDGLTGLANRRSFQEALQTEWRRAMRNRHFLTLILADIDSFKQ 208 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILA 196 ND +GH GD + Q+ V +P+ V R GGEEFA + + LA Sbjct: 209 FNDTYGHVAGDDCLV----QIAKVIKSPLMRSSDLVARYGGEEFAILLPDTDLKGGEHLA 264 Query: 197 NDLRKIIENSQIN-ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253 ++R+ +E +I+ +S H+T+S G+A + + ++ AD+ALY AK+ GRN Sbjct: 265 EEIRREVEQLEIDHENSATGAHVTMSFGVASVVPRLDLVELDLVCAADKALYAAKEDGRN 324 Query: 254 RVVC 257 +V+ Sbjct: 325 QVLT 328 >gi|15642917|ref|NP_227958.1| response regulator [Thermotoga maritima MSB8] gi|4980635|gb|AAD35236.1|AE001699_13 response regulator [Thermotoga maritima MSB8] Length = 450 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 24/166 (14%) Query: 104 SRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 S D L+GL N A F+ + + +++ DID FK+IND FGHPVGD+V+ +++ Sbjct: 295 SETDGLTGLFNKRAIMRFLEEVLRSEKNIAVAMMDIDDFKKINDTFGHPVGDEVLRVVAN 354 Query: 161 QL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------ 212 L V G VGR GGEEF + E++A + K ++N NI + Sbjct: 355 ILRETVKIGK---VGRYGGEEF-MVVFETGERDAVV------KTMDNIMENIRNFDWQKI 404 Query: 213 -GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G +T+S G+A + P+ +I AD+ LY AK+SG++R V Sbjct: 405 FGSEKKVTLSGGVAFSKKESSPVE-LIEEADKKLYTAKRSGKDRYV 449 >gi|325983256|ref|YP_004295658.1| diguanylate cyclase [Nitrosomonas sp. AL212] gi|325532775|gb|ADZ27496.1| diguanylate cyclase [Nitrosomonas sp. AL212] Length = 373 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 19/183 (10%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 ++ RI ++S D L+ N F I+ +N+ L +F D+D+FK+IND+ G Sbjct: 190 LNQQRIKEISYQDALTQAYNRRYFDLRLKDEIARCIRWNDDLICMFLDVDHFKKINDSHG 249 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V+ + + + V R GGEEF A ++ A +A LRK I +S Sbjct: 250 HQTGDSVLRHMVSLIKEQVRSCDIVARYGGEEFVVALPSTTLHAAHEIAERLRKAICSSA 309 Query: 208 INISSGPSIHITISAGIAERCHKEPI----------STIIYRADQALYVAKKSGRNRVVC 257 I I ++I++S G+A P+ +T++ RAD+ALY AK+ GRN+VV Sbjct: 310 I-ILYDKQLNISVSIGMAS-LRDLPVALQQDADFICTTLLERADKALYEAKEGGRNQVVV 367 Query: 258 FSD 260 +++ Sbjct: 368 YTN 370 >gi|322384357|ref|ZP_08058055.1| diguanylate cyclase-related-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150859|gb|EFX44296.1| diguanylate cyclase-related-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 567 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 123/247 (49%), Gaps = 27/247 (10%) Query: 18 NLESFSPHTFMIYFSIFFSIFIATVIFIANI--FLFYIGLTPFYGLEYILVENLSLVIIS 75 N E +S + ++ + S+ ++ ++ N+ + + P+Y Y EN L Sbjct: 334 NYEKYSVKSKIMEMTGSRSLMVSPILIADNVVGIIHVVHQNPYY-FSY---ENYKL---- 385 Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL-LNH--SAFISSLGSYNEKLSIV 132 + L G+I ++ + + ++ D L+GL + H I ++ + +++ Sbjct: 386 --LQTLSGHIGLAMANATL--HAEVQRMVITDNLTGLYVRHYLDGQIKTMQKQDAIGTLI 441 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID FKQIND FGH VGD ++ +SD + + R GGEE A +S+ E Sbjct: 442 LVDIDCFKQINDTFGHQVGDSILIQVSDIVRSMIREQDITARWGGEELAIYLPVTSKNEG 501 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKK 249 +A+++R I + PS +T+S G+A+ + + IS ++ Y+AD ALY AK+ Sbjct: 502 MQMADEIRTAIMQ-----KTSPS--VTVSCGVADWKSTDDKISVESLFYKADMALYEAKR 554 Query: 250 SGRNRVV 256 SG+NRVV Sbjct: 555 SGKNRVV 561 >gi|319783866|ref|YP_004143342.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169754|gb|ADV13292.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 391 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 86/154 (55%), Gaps = 6/154 (3%) Query: 107 DCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+GLLN A S G S+ +SIV FD+D+FK+ ND +GHPVGD+V+ + ++ Sbjct: 222 DPLTGLLNRRALTSLYGERSFGPFMSIVMFDLDHFKRTNDVYGHPVGDQVLCRFA-AVIK 280 Query: 165 VFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + P RLGGEEFA ++++A LA+ + + ++I + + T+S G Sbjct: 281 KYARPGVDAFRLGGEEFAVVMSRMTDEKAYDLASKI-GVAFGAEIVPTQLGKLRSTVSGG 339 Query: 224 IA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I + ++ AD ALY AK++GRN V+ Sbjct: 340 IGFGEASGSSLDNVLTEADAALYAAKRAGRNCVI 373 >gi|313681649|ref|YP_004059387.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313154509|gb|ADR33187.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 511 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 10/177 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139 G + L + +Q SR D L+ L N A L + + D+D+F Sbjct: 334 GKKIATLEAELAQATQASREDFLTKLFNKRAIEEYLNLKEAEYERHGHSFCVAMLDLDHF 393 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILAND 198 K +ND +GH GD V+ + L + VGR GGEEF A LG ++ E A I Sbjct: 394 KAVNDTYGHEAGDAVLIAFAKILKLEARNSDIVGRYGGEEF-LAILGDTDLEGAKIFCEK 452 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R +E + + G I ++IS G+A+R + + +I AD+ LY AK+ GRNRV Sbjct: 453 VRAHVEQAHF-MYQGQRIAVSISIGVAQRSNFPSLKALISGADERLYDAKRKGRNRV 508 >gi|53724041|ref|YP_104559.1| GGDEF domain-containing protein [Burkholderia mallei ATCC 23344] gi|76810683|ref|YP_332955.1| GGDEF domain-containing protein [Burkholderia pseudomallei 1710b] gi|121600931|ref|YP_992557.1| GGDEF domain-containing protein [Burkholderia mallei SAVP1] gi|126441685|ref|YP_001058461.1| diguanylate cyclase [Burkholderia pseudomallei 668] gi|126454383|ref|YP_001065722.1| diguanylate cyclase [Burkholderia pseudomallei 1106a] gi|217423756|ref|ZP_03455257.1| diguanylate cyclase [Burkholderia pseudomallei 576] gi|242315781|ref|ZP_04814797.1| diguanylate cyclase [Burkholderia pseudomallei 1106b] gi|251767734|ref|ZP_04820230.1| diguanylate cyclase [Burkholderia mallei PRL-20] gi|254188320|ref|ZP_04894831.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237] gi|52427464|gb|AAU48057.1| GGDEF domain protein [Burkholderia mallei ATCC 23344] gi|76580136|gb|ABA49611.1| GGDEF domain protein [Burkholderia pseudomallei 1710b] gi|121229741|gb|ABM52259.1| GGDEF domain protein [Burkholderia mallei SAVP1] gi|126221178|gb|ABN84684.1| diguanylate cyclase [Burkholderia pseudomallei 668] gi|126228025|gb|ABN91565.1| diguanylate cyclase [Burkholderia pseudomallei 1106a] gi|157935999|gb|EDO91669.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237] gi|217393614|gb|EEC33635.1| diguanylate cyclase [Burkholderia pseudomallei 576] gi|242139020|gb|EES25422.1| diguanylate cyclase [Burkholderia pseudomallei 1106b] gi|243061853|gb|EES44039.1| diguanylate cyclase [Burkholderia mallei PRL-20] Length = 466 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141 +L+EL + ++ L+ D L+G N FI + S S++ D+D FK Sbjct: 290 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 349 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 INDN+GH VGD V+ Q + + R+GGEEF A+ +A +R Sbjct: 350 INDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 409 Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 410 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 465 >gi|54296270|ref|YP_122639.1| hypothetical protein lpp0299 [Legionella pneumophila str. Paris] gi|53750055|emb|CAH11447.1| hypothetical protein lpp0299 [Legionella pneumophila str. Paris] Length = 609 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 70/134 (52%), Gaps = 3/134 (2%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +I+ D+D+FK+IND FGH GD V+ L L R GGEEF Sbjct: 475 AILMLDLDHFKKINDTFGHDAGDLVLKELGQILNSDIRLGDIAARYGGEEFVLLLYDIDA 534 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A + A +LR I N Q+ + P IT S GI+ K P + +I AD+ALY A Sbjct: 535 QAAKMKAENLRSAISNLQVKYGAQPVGQITASIGISVYPDDAKSP-AEVIEAADKALYQA 593 Query: 248 KKSGRNRVVCFSDI 261 K GRN+V+ FS+I Sbjct: 594 KNKGRNKVILFSEI 607 >gi|53718944|ref|YP_107930.1| hypothetical protein BPSL1306 [Burkholderia pseudomallei K96243] gi|52209358|emb|CAH35303.1| putative membrane protein [Burkholderia pseudomallei K96243] Length = 454 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141 +L+EL + ++ L+ D L+G N FI + S S++ D+D FK Sbjct: 278 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 337 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 INDN+GH VGD V+ Q + + R+GGEEF A+ +A +R Sbjct: 338 INDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 397 Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 398 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453 >gi|311278102|ref|YP_003940333.1| diguanylate cyclase [Enterobacter cloacae SCF1] gi|308747297|gb|ADO47049.1| diguanylate cyclase [Enterobacter cloacae SCF1] Length = 460 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 15/176 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHS----------AFISSLGSYNEKLSIVFFDID 137 ++L+ELF R Q ID L+ LLN A+ S G+ LSI+ D+D Sbjct: 281 TLLRELFEEVAR--QEVGIDVLTKLLNRRFLPPIFKREVAYASRTGT---PLSILVIDVD 335 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK IND +GH GD V+ +S + +V R GG+EF +S E LA Sbjct: 336 KFKGINDTWGHHTGDDVLRRISQVFYDNVRSSDYVFRYGGDEFIVMLTEASGSETLQLAE 395 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +R+ +E ++ +G +I +++S G A +I AD+ALY+AKK GRN Sbjct: 396 RIRRRVEKIKMQSPTGDAIPLSLSIGAAMFSGHPDYEHLIRNADEALYIAKKRGRN 451 >gi|302337056|ref|YP_003802262.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293] gi|301634241|gb|ADK79668.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293] Length = 353 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/139 (38%), Positives = 73/139 (52%), Gaps = 9/139 (6%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 SI+ DID+FK++ND +GH GD+VI +S + R GGEEF E Sbjct: 216 SIIMLDIDHFKKVNDTYGHTAGDEVIKSVSRIIRDNLRQQDMGVRYGGEEFLVFLEEVPE 275 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-----ISTIIYRADQAL 244 A +A LRK + + + S +TISAG+A H P I I+RAD AL Sbjct: 276 TTAYDIAERLRKKVGTCHEELMAC-SEQVTISAGVA---HYRPSVDKNIEACIHRADVAL 331 Query: 245 YVAKKSGRNRVVCFSDIEN 263 Y +K++GRNR C S+IE Sbjct: 332 YYSKRNGRNRTTCASEIEQ 350 >gi|153839376|ref|ZP_01992043.1| sensory box/ggdef family protein [Vibrio parahaemolyticus AQ3810] gi|149747098|gb|EDM58086.1| sensory box/ggdef family protein [Vibrio parahaemolyticus AQ3810] Length = 488 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 21/172 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHP 149 ++ LS D L+GL N F L Y + FDID+FK+IND GH Sbjct: 322 QLRNLSEKDGLTGLWNRRKFEEQLTHYANIVERYPDTPTTCLALFDIDHFKRINDERGHD 381 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKVI +++ L+ T FV R+GGEEFA ++ +EA ++ N LR + Sbjct: 382 EGDKVICSVAETLLREVRTTDFVSRVGGEEFAVIMPHTTVKEAEVVLNRLR-------VA 434 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259 + ++ +T+SAG ++ S Y+ AD ALY +K +GRN V +C S Sbjct: 435 VQLRSNMTVTVSAGYSDLTADRTRS---YKCADIALYESKSAGRNCVSLCHS 483 >gi|150017320|ref|YP_001309574.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Clostridium beijerinckii NCIMB 8052] gi|149903785|gb|ABR34618.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Clostridium beijerinckii NCIMB 8052] Length = 981 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 93/185 (50%), Gaps = 12/185 (6%) Query: 85 ISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFF-D 135 I+GSI + E IS +RI ++ D L+ L N + F++ L +Y K IVFF D Sbjct: 537 ITGSIRDISERKISEDRIKFMAFYDSLTKLPNRTLFMNRLNEQLQLSNYANKQGIVFFID 596 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 +D FK IND GH GDK++ L+ Q + + RLGG+EF S E E Sbjct: 597 LDNFKNINDTMGHEYGDKLLISLAKQFENLIEEKDTISRLGGDEFILLHPDSKEDEIQTY 656 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254 AN L + + ++ ++IT S GIA STI+ AD A+Y AK+ G+NR Sbjct: 657 ANKLLGLFD--KVFKIDNKHMYITASVGIALYPKDGRDSSTILRNADAAMYRAKELGKNR 714 Query: 255 VVCFS 259 F Sbjct: 715 FSLFD 719 >gi|296134751|ref|YP_003641993.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12] gi|295794873|gb|ADG29663.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12] Length = 530 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 7/162 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++++++ D L+G N F + ++ S++ D D+FK++ND GH VGD V Sbjct: 362 LTRMTQTDALTGFYNRRGFFERANALLQSARDQAPSLLLIDADHFKRVNDTHGHAVGDTV 421 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L++++ +GR+GGEEFA +S + A LA+ +R + + I G Sbjct: 422 LVQLANRMNAALREGDVIGRIGGEEFAVFLPTTSLENAYELADRIRLSVSRHALRI-QGL 480 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+ + + + + RAD A+Y AK++GRNRV Sbjct: 481 RVPMTLSIGVTVLQPGESTLEAALGRADTAMYQAKQNGRNRV 522 >gi|242280249|ref|YP_002992378.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242123143|gb|ACS80839.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 383 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 13/183 (7%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFD 135 Y G L+ + + + +L +D L+G+ + F S+L +N KLS++ D Sbjct: 187 YTFGRSLRREYAAMEDLKKLVAVDELTGVCSRRRVLEAGDCIFKSAL-RFNNKLSVLMMD 245 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK++ND+ GH VGD+V+ + + V GRLGGEEF S + + Sbjct: 246 IDHFKKVNDDHGHCVGDEVLKETASRCSDVLREVDHFGRLGGEEFLVILPHSGVHDGIKV 305 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254 A LR + + + +++S G+AE R H + ++I AD+ LY AKK GR+ Sbjct: 306 AERLRSCVRERMFKVGES-YLPVSVSIGVAELRGHGD-FKSLIQEADEQLYRAKKCGRD- 362 Query: 255 VVC 257 +VC Sbjct: 363 LVC 365 >gi|302185175|ref|ZP_07261848.1| GGDEF [Pseudomonas syringae pv. syringae 642] Length = 551 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + Q A + +D+R ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDDIRHRF--AEIHYPAQPADLFC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRNRV Sbjct: 497 TFSAGVVSLGANDDSLSLASQADTALYRAKHAGRNRV 533 >gi|258625533|ref|ZP_05720422.1| sensory box/GGDEF family protein [Vibrio mimicus VM603] gi|258582177|gb|EEW07037.1| sensory box/GGDEF family protein [Vibrio mimicus VM603] Length = 308 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 86/171 (50%), Gaps = 13/171 (7%) Query: 98 NRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 ++ QL+ D L+ L N SAF + S + LS + DID FKQIND+FGH Sbjct: 138 EQLYQLANTDALTQLCNRRKLWADFRSAFARAKHS-KQPLSCISIDIDNFKQINDHFGHD 196 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ FL+ + GR+GGEEF + A LA +R+ SQ + Sbjct: 197 KGDEVLCFLAQLFYELTSEHHICGRVGGEEFIIVLEDTPVATAFALAEQIRQRF--SQHS 254 Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 H+ + AG+A R + I R+DQALY AK+SGRNR ++ Sbjct: 255 FFEQKE-HVYLCAGVATMRLSDHDFTDIYRRSDQALYQAKRSGRNRCCIYN 304 >gi|229592177|ref|YP_002874296.1| hypothetical protein PFLU4782 [Pseudomonas fluorescens SBW25] gi|229364043|emb|CAY51618.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length = 352 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 86/175 (49%), Gaps = 22/175 (12%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S LSRID L+GLLNH ++ L +I DID+FK+IND GH VGD Sbjct: 180 LSALSRIDSLTGLLNHGSWKDLLHLKFHKCQQQQSHATIALIDIDHFKRINDTHGHIVGD 239 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---ENSQIN 209 V+ LS +L GR GG+EF ++AA + +R+ N QI Sbjct: 240 AVLRQLSLELRRNLRENDLAGRYGGDEFCVILPQMPLEQAAQVMERMRETFSNYRNPQI- 298 Query: 210 ISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVCFSD 260 P + +++S G+A +P + + AD+ALY AK +GRNRV D Sbjct: 299 ----PELRVSLSIGLAG---FQPSFTNAAMWLNAADRALYAAKDTGRNRVSVSDD 346 >gi|218689426|ref|YP_002397638.1| hypothetical protein ECED1_1665 [Escherichia coli ED1a] gi|218426990|emb|CAR07862.2| conserved hypothetical protein [Escherichia coli ED1a] Length = 296 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L ++ DID FK +ND +GH +GD V+ L+ L V R GGEEF ++ Sbjct: 159 LYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATN 218 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 ++EA + ++++N I S G I+IT++AG++ +EP+ +I RAD+A+Y K Sbjct: 219 DEEACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVLIGRADRAMYEGK 277 Query: 249 KSGRNRVVCFSDIEN 263 ++GRNR + F D +N Sbjct: 278 QTGRNRCM-FIDEQN 291 >gi|116252403|ref|YP_768241.1| GGDEF domain/EAL domain-containing protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257051|emb|CAK08145.1| putative GGDEF/GAF domain sensory box protein [Rhizobium leguminosarum bv. viciae 3841] Length = 417 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 12/187 (6%) Query: 89 ILKELF-ISYNRIS--QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 IL+EL + +RI Q + ID L+ + AF IS + LS + FDID+ Sbjct: 154 ILEELAGAAMDRIELMQSAAIDSLTEAMTRRAFKQEAEQLISLALRHKHDLSCIVFDIDH 213 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK++ND GH GD+V+ ++ GRLGGEEFA + AA +A Sbjct: 214 FKKVNDTHGHAAGDEVLKAVASTCKTTLRAGDLFGRLGGEEFAVILPHVDREGAAAVAEK 273 Query: 199 LRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 LR I SQI + +T S G A + I T++ +AD A+Y AK GRNR V Sbjct: 274 LRAAI-ASQIIRGDHGDLTVTASFGTSALSIVSKEIETLLAQADAAMYQAKHGGRNRCVS 332 Query: 258 FSDIENN 264 +S I + Sbjct: 333 WSSIHAD 339 >gi|78777468|ref|YP_393783.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78498008|gb|ABB44548.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM 1251] Length = 318 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFK 140 ++ EL + + S +D L+ + N + S L Y++ L ++ DID FK Sbjct: 141 VITELHQKVKILEETSNLDPLTKVFNRRSLSSYLQEVCSNKSLPYDD-LHVMMLDIDNFK 199 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH GDK++ F+S+ L + R GGEEF +S+ + +AN L Sbjct: 200 SINDKYGHIAGDKILIFISNILRKTLRDGDKIFRYGGEEFTIVINRNSDDQCEQIANRLL 259 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +I ++ + I G I +T S G+ + + +++ RAD+ALYV+KKSG+N V Sbjct: 260 HLISSNNL-IYMGERISVTASIGVTKLKEHDTPDSLLSRADKALYVSKKSGKNMV 313 >gi|116049803|ref|YP_791390.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218892192|ref|YP_002441059.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|115585024|gb|ABJ11039.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218772418|emb|CAW28200.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 401 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 16/197 (8%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLG 123 LV++ + +L Y+ +E F+ + ++ D L+GL+N + G Sbjct: 199 GLVVLICSFAL---YLQDYAQREQFLGRRLLGMMAEQDSLTGLVNRRYYELLAQRALEQG 255 Query: 124 SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181 + EK ++++ D+D FK ND++GHP GD + L L P+ RLGGEEFA Sbjct: 256 AREEKGVALILVDVDDFKAYNDHYGHPAGDAALRQLGVVLRQGARRPLDIAARLGGEEFA 315 Query: 182 AAALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIY 238 S E +A LR+ +E + S+GP +TIS G+A + + Sbjct: 316 VLLYDSEEGNTLAIAERLRQAVEALGIEHLGSSAGPC--LTISLGVAYSTSGMGLDALYR 373 Query: 239 RADQALYVAKKSGRNRV 255 AD+ALY AK +GRN V Sbjct: 374 EADRALYEAKDAGRNAV 390 >gi|296132855|ref|YP_003640102.1| diguanylate cyclase [Thermincola sp. JR] gi|296031433|gb|ADG82201.1| diguanylate cyclase [Thermincola potens JR] Length = 383 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 16/249 (6%) Query: 19 LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78 +E SP F +++ + ++ + N + ++ + Y + + + ++LV + Sbjct: 127 MEKKSPSFFGPEHNLYIPLLMSVPLVSRNKVIGFVNIHSMYQNKSLTPDKIALVNALASQ 186 Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 + + IS + L +N + + + ID + L N F I+ + LS+ Sbjct: 187 ASIA--ISNAQL------FNAMKEQATIDPCTNLFNFRYFQQKLDEEINKAAANGTALSL 238 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK++ND +GH GD+V+ +S L + V R GGEEFA +++ Sbjct: 239 IILDIDFFKKVNDTYGHLYGDQVLHEISKILKSNVRSEDTVCRYGGEEFAIIFPNCTQKI 298 Query: 192 AAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 A +A +R IE + N G +T+S G+AE + +I+RAD +LY AK + Sbjct: 299 AERIAERIRAKIEETTANDRRGIFKSPVTVSIGVAEYTPDINKTMLIHRADCSLYYAKNT 358 Query: 251 GRNRVVCFS 259 GRNRV + Sbjct: 359 GRNRVCGYD 367 >gi|229192257|ref|ZP_04319222.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 10876] gi|228591207|gb|EEK49061.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 10876] Length = 431 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 11/176 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 + EL +Y +L+ ID L+ + N F L +EK++I+ FDID FK + Sbjct: 255 ITELDETYQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTV 314 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD + L++ + R GGEEF + E+EA +A LR Sbjct: 315 NDTYGHDFGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFF 374 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 IE Q +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 375 IETKQF---TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 426 >gi|163758632|ref|ZP_02165719.1| hypothetical protein HPDFL43_14452 [Hoeflea phototrophica DFL-43] gi|162283922|gb|EDQ34206.1| hypothetical protein HPDFL43_14452 [Hoeflea phototrophica DFL-43] Length = 566 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 10/169 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFF-DIDYFKQINDNFGHPVGDK 153 ++Q R D L+G LN F+++ S E + + +F DID+FKQ+ND GHP+GD+ Sbjct: 131 VAQFER-DALTGALNRERFVTATKSVLEVRGRKRFAALFLVDIDHFKQVNDTHGHPIGDR 189 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ F + QL F +VGRLGG+EFA S A + +E + G Sbjct: 190 VLCFFAQQLEASF-PDGWVGRLGGDEFAVFVEHSDPITEAFAQKRCSEFVERLAQGLDIG 248 Query: 214 PS-IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ S GIA H + ++ AD ALY +KK+GR + +++ Sbjct: 249 TQRLMVSASVGIAMAPRHGKTWGALVANADMALYASKKNGRAQSTMYAE 297 >gi|254478046|ref|ZP_05091430.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653] gi|214036050|gb|EEB76740.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653] Length = 692 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 11/154 (7%) Query: 107 DCLSGLLNHSAFISSLGS------YNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N F+ L N+KL S++ FD+D+FK +ND FGH GD V+ ++ Sbjct: 538 DPLTNIYNRRFFMQMLEQEIERVKRNKKLFSLIMFDLDHFKNVNDRFGHAAGDMVLKSVA 597 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D + + R GGEEF +S AA LA +LRK I ++++ +T Sbjct: 598 DTVKGRIRKTDYFARWGGEEFIILLPETSLNNAAELAEELRKKISETELDGIG----KVT 653 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 S G+ E + + + T++ R D ALY AK SGRN Sbjct: 654 ASFGVTEYRNTDTVDTVLLRVDGALYEAKGSGRN 687 >gi|167577730|ref|ZP_02370604.1| GGDEF domain protein [Burkholderia thailandensis TXDOH] Length = 504 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 10/178 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142 L++ + +R+ +LSR D L+GL N A +L S +L SI+F D D+FK+ Sbjct: 319 LRDRTAARDRLLELSRTDPLTGLGNRRALDDALQSEWARLQRNDSCLSILFIDADHFKRY 378 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND GH GD + L+ + G + R GGEEF A + E AA +A +R Sbjct: 379 NDAHGHAQGDLALKRLAACIARHAGRSGDLAARYGGEEFVAILPDADETAAARIAESIRA 438 Query: 202 IIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I ++ ++ P T+S G A R + + AD ALY AK GR+R V Sbjct: 439 GIRDATRAGATPPIPRFTVSVGCATARRGAHASLDAFVRAADDALYRAKADGRDRTVA 496 >gi|254180255|ref|ZP_04886854.1| diguanylate cyclase [Burkholderia pseudomallei 1655] gi|184210795|gb|EDU07838.1| diguanylate cyclase [Burkholderia pseudomallei 1655] Length = 454 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141 +L+EL + ++ L+ D L+G N FI + S S++ D+D FK Sbjct: 278 VLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFKT 337 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 INDN+GH VGD V+ Q + + R+GGEEF A+ +A +R Sbjct: 338 INDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRT 397 Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 398 TIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453 >gi|223039876|ref|ZP_03610160.1| 3-deoxy-d-manno-octulosonic-acid transferase [Campylobacter rectus RM3267] gi|222878885|gb|EEF13982.1| 3-deoxy-d-manno-octulosonic-acid transferase [Campylobacter rectus RM3267] Length = 417 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 8/171 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 E + N+I+ + D L+G+ N F ++ Y E + DID+FK+IND Sbjct: 245 EAMENINQIADFANKDFLTGVYNRRYFYENMNEYVAYAEEHMEPYVVAMLDIDHFKKIND 304 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GDKV+ L+ +L+ + R GGEEF S ++A +LR I Sbjct: 305 THGHNSGDKVLKTLAKKLIDETKGDDLIARFGGEEFCIILKDISNEDAVKFFVNLRANIA 364 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 N ++ + I T+S G+A + ++ AD+ALY AK++GRNRV Sbjct: 365 NCKVQLKK-EQISFTVSIGVAFSRSDYRLDELLELADEALYRAKENGRNRV 414 >gi|152999827|ref|YP_001365508.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185] gi|151364445|gb|ABS07445.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS185] Length = 921 Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 10/171 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++ L+ D L+ L N F+ L N +L+ V D+D FK IND+FGH +G Sbjct: 492 QLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIG 551 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINI 210 D+++ L+ +L G + R+GG+EF A G E A +A N LR++ E I + Sbjct: 552 DEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQVFEQPFI-V 610 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S+G + +T S G++ + T++ AD A+Y AK GRN +++ Sbjct: 611 STGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTE 661 >gi|113971525|ref|YP_735318.1| diguanylate cyclase [Shewanella sp. MR-4] gi|114046280|ref|YP_736830.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113886209|gb|ABI40261.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113887722|gb|ABI41773.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 646 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 22/207 (10%) Query: 67 ENLSLVIISITISLLLGYISGSILK--ELF----ISYNR-ISQLSRIDCLSGLLNHSAFI 119 + L+L+ + ++ L++ ++G IL LF + NR + ++ D L+ L N Sbjct: 433 QELALLEKNKSLQLIILLLTGCILAIVSLFAYKQVHRNRHLQTIALTDYLTQLPNRRHIY 492 Query: 120 SSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 + Y ++ LS++ FD DYFK+INDNFGH +GD+ + ++ + + Sbjct: 493 AQAEQYFQQALKQKTPLSVIIFDADYFKKINDNFGHEIGDQALLTIAQACKELTADRNLI 552 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAE----- 226 GR+GGEEF ++ + LA++L+ +I IN+ + +T+SAG+A Sbjct: 553 GRIGGEEFLILLPNTTAERVWELAHELQSLISRYGAINLPE--ELKLTVSAGVATLSPEA 610 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRN 253 + + + ++ RAD ALY AK +GRN Sbjct: 611 KPQDDSFARLLKRADNALYEAKNAGRN 637 >gi|293409805|ref|ZP_06653381.1| conserved hypothetical protein [Escherichia coli B354] gi|291470273|gb|EFF12757.1| conserved hypothetical protein [Escherichia coli B354] Length = 365 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 NR+ L+ D L+G+ N A S L + +++ D+D+FK+ ND +GHP GD+ Sbjct: 201 NRLDALAHRDPLTGIANRRAMNSILHDAMDNGGSFALIMLDVDFFKRYNDTYGHPAGDRC 260 Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 + ++D L + V R GGEEFA ++ EA +A +++ ++ + I + +S Sbjct: 261 LIQVADALQRSTRQSEDVVVRYGGEEFAIILFNATLPEAETVAARVKQELKLAAIPHQAS 320 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S GI + II AD ALY AK+SGRNR Sbjct: 321 AVNAFVTVSQGITCSAPAKTAEQIISDADAALYRAKESGRNR 362 >gi|259414773|ref|ZP_05738696.1| diguanylate cyclase with GAF sensor [Silicibacter sp. TrichCH4B] gi|259349224|gb|EEW60971.1| diguanylate cyclase with GAF sensor [Silicibacter sp. TrichCH4B] Length = 603 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 89/195 (45%), Gaps = 23/195 (11%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS----AFI 119 ++ EN++L +++ +S NR+SQL D L+GLLN AF Sbjct: 415 LIAENVALAAVNLNLS------------------NRLSQLVGYDPLTGLLNRRSLDLAFC 456 Query: 120 SSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 G+ + + DID+FK IND FGH GD+VI S L G R GGE Sbjct: 457 KYAGAPPALPTACLIIDIDHFKSINDGFGHEAGDEVIKSFSGLLAATVGDRGTCYRFGGE 516 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EF LG + A +A D+R ITISAG+A + T++ Sbjct: 517 EFVVLLLGQDDTIAFEIAEDIRTRTAFMAFTYRGQSLGKITISAGLAVASSNGSMETLLS 576 Query: 239 RADQALYVAKKSGRN 253 RAD AL AK +GR+ Sbjct: 577 RADAALLRAKSAGRD 591 >gi|241258759|ref|YP_002978643.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863229|gb|ACS60892.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 551 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/155 (38%), Positives = 82/155 (52%), Gaps = 7/155 (4%) Query: 106 IDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 +D L+GL N S +L S SI D+D+FK IND+F H +GD+V++ + L Sbjct: 399 LDALTGLYNRKYLDSRFKALTSEKRPYSIAMLDVDHFKSINDDFSHMIGDRVLSAIGTIL 458 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITIS 221 R GGEEF G+ + AA L LR IE + I +G +H+TIS Sbjct: 459 RSQLRVTDQAIRFGGEEFVVLFAGAP-RGAADLCERLRSAIERWDWSEICNG--LHVTIS 515 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+A + + I+ ADQ LY AKK+GRNRVV Sbjct: 516 IGVAGTLSAKSPNEILAIADQNLYAAKKTGRNRVV 550 >gi|157377093|ref|YP_001475693.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157319467|gb|ABV38565.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 340 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++ D L+GL N S S + L ++ D+D+FK +NDN+GH V Sbjct: 173 ERLQNMAARDPLTGLYNRLHLESVFEQITQSESSPDSSLFMLLIDLDHFKSVNDNYGHEV 232 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDKV+ +++ + G + R+GGEEF G++ +A L+ IE S +++ Sbjct: 233 GDKVLVRVAELIKQTIGENDWGFRVGGEEFCLLLPGTNHASVQEVAQRLQLAIEGSAVSV 292 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 + T S GIA+ + +YR AD+ LY AK+ GRN VV Sbjct: 293 GE-HKVSTTASIGIAQWPESGELMQALYRTADRRLYRAKEQGRNCVV 338 >gi|333029105|ref|ZP_08457168.1| hypothetical protein STTU_p0142 [Streptomyces sp. Tu6071] gi|332742313|gb|EGJ72755.1| hypothetical protein STTU_p0142 [Streptomyces sp. Tu6071] Length = 225 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 8/152 (5%) Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GLL + + L + + ++V D D+FKQIND GH GD V+A L +L Sbjct: 45 DPLTGLLRRDTYTARARRILARHGDNTTVVMVDADHFKQINDRDGHEAGDAVLAALGQRL 104 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 G GRLGG+EFA A +E A L +R + ++ + + G I + +S Sbjct: 105 TAWAGPRAVCGRLGGDEFAVALPLPAEHRAERLEQLVRAL--HAPVRLDDGRLIQVAVSV 162 Query: 223 GIA--ERCHKEPISTIIYRADQALYVAKKSGR 252 G A + H ++ + +D ALY K +GR Sbjct: 163 GAATTDTLHTRDLAALQRASDAALYDGKHTGR 194 >gi|332702253|ref|ZP_08422341.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay] gi|332552402|gb|EGJ49446.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay] Length = 554 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 86/167 (51%), Gaps = 10/167 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 S L+R D L+ LLNH++ L S +L+ D+D+FK +ND +GH VGDK Sbjct: 386 SMLTR-DSLTNLLNHTSLKIRLESECSRARRIGARLAFAMIDLDHFKNVNDTYGHLVGDK 444 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISS 212 V+ L+ L VGR GGEEFA L +++ AA L + +R + + + Sbjct: 445 VLKILAKVLKQRLRVSDVVGRYGGEEFAVILLDIDDRDHAAELLDRIRAAFADMDQS-AD 503 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G + +T S GIA T+ AD+ALY K+ GRNRVV S Sbjct: 504 GATFRVTFSCGIATFPEFPDAHTLADAADRALYEGKRLGRNRVVLAS 550 >gi|188591141|ref|YP_001795741.1| diguanylate cyclase (ggdef domain) [Cupriavidus taiwanensis LMG 19424] gi|170938035|emb|CAP63019.1| putative diguanylate cyclase (GGDEF domain) [Cupriavidus taiwanensis LMG 19424] Length = 390 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 1/128 (0%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 EKLS++ D+DYFK INDN+GH GD V+ + + RLGGEEF Sbjct: 250 GEKLSVLLCDLDYFKFINDNYGHSAGDAVLTQVGRIIAAGIRRRDIAARLGGEEFVVLLP 309 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 + + A LA LR+ +E + +++ G ++T S G+A E + ++ RAD LY Sbjct: 310 DTPHEAALQLAERLRQTLEQTSMDVLPGMG-NVTASFGVATLRPGEDLEALLMRADNVLY 368 Query: 246 VAKKSGRN 253 AK +GRN Sbjct: 369 AAKNNGRN 376 >gi|170697745|ref|ZP_02888832.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] gi|170137360|gb|EDT05601.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] Length = 452 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 14/179 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 + LF ++ + + S D L+G N H+ F+ + E LS++ D+D+FK Sbjct: 275 QRLFEAHTMLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDHFKAY 333 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD + +++ L P V R GGEEFA + + A ++A + R+ Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARLVAEEARE 393 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257 + + + S P+ +++S G A E +ST +I AD ALY AK GRNRVV Sbjct: 394 AVLRLDLAMPSSPAGRVSVSVGCATVSADE-LSTPDALIEAADAALYRAKDGGRNRVVA 451 >gi|152980290|ref|YP_001353520.1| hypothetical protein mma_1830 [Janthinobacterium sp. Marseille] gi|151280367|gb|ABR88777.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 417 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 G + LS++ D+D+FK+IND +GH GD+V+ + +GRLGGEEF Sbjct: 270 GKFGRPLSLLIIDLDHFKRINDTYGHAGGDEVLREFARMTRASLRDGDALGRLGGEEFGI 329 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGP--SIHITISAGIAERCHKEPISTIIYRA 240 + A +A LR E+S+ ++ SG H +IS GIA E + RA Sbjct: 330 LLPNTDTVGALAIARRLR---EDSERHLISGTFGECHYSISIGIATWRDGENFDRLSIRA 386 Query: 241 DQALYVAKKSGRNRVV 256 D+ALY AK SGRNRV+ Sbjct: 387 DRALYTAKNSGRNRVL 402 >gi|149184376|ref|ZP_01862694.1| GGDEF domain protein [Erythrobacter sp. SD-21] gi|148831696|gb|EDL50129.1| GGDEF domain protein [Erythrobacter sp. SD-21] Length = 243 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 17/233 (7%) Query: 33 IFFSIFIATVIFIANIF--LFYIGLTPFYGLEYILVENLSLVI---ISITISLLLGYISG 87 I + IA ++ ++F L + P G +L +L++ I ++ ++L++ + Sbjct: 2 IRSTAIIAGILTAGSLFCTLIVMAFRPSDGEHVVLALSLAVAIPLVCAVPVALVVASQA- 60 Query: 88 SILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQIN 143 E+ NR ++ + D L+ L N F +G E +++ D+D FKQ+N Sbjct: 61 ----EVLARLNRQLAYEASHDALTDLPNRREFFDEIGRRLESGGGGTVLLADVDRFKQVN 116 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH GD+ + L+ + V RLGGEEF +S +A LRK + Sbjct: 117 DHHGHHTGDEALRALARLFAREIASDGLVARLGGEEFGVLIPDTSLARGHEVAERLRKTV 176 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255 E + G +TIS GI C +E S R AD ALY AK GRNRV Sbjct: 177 EAQDFHSPEGNRFPLTISIGID--CLRERESAYPLRGADSALYAAKSEGRNRV 227 >gi|170744709|ref|YP_001773364.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium sp. 4-46] gi|168198983|gb|ACA20930.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium sp. 4-46] Length = 457 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 9/165 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N F S L G + E L+++ DID FK IND+FGH GD+V Sbjct: 290 ELAVTDGLTGLHNRRYFDSHLAGLFRETSLRGRPLALLLLDIDRFKAINDSFGHDAGDEV 349 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +D++ V R GGEE + A +A +R+ IE + + G Sbjct: 350 LRQFADRIRAHTRGIDIVARFGGEEIVVVVPDTGLDGAGQVAERIRERIEATPFLVHGGT 409 Query: 215 -SIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257 I +T+S G+A R + + + ++ RAD ALY AK+ GRNRVV Sbjct: 410 RGIDVTVSIGLAVRHPDDALPADLLKRADVALYRAKQEGRNRVVA 454 >gi|262173335|ref|ZP_06041012.1| GGDEF family protein [Vibrio mimicus MB-451] gi|261890693|gb|EEY36680.1| GGDEF family protein [Vibrio mimicus MB-451] Length = 338 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGL N AF +L + + ++ DID+FK +ND +GH GD++I ++ +L Sbjct: 182 DSLSGLYNRRAFDGDMFTLIHADHPVCLIMLDIDHFKALNDTYGHLFGDQIIRAIAKRLQ 241 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA S + A A +R+ IE + + SG S+ +IT S Sbjct: 242 SLCRDGVTAYRYGGEEFALITPNKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGNITAS 301 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E+ + + +++ RAD+ LY AK GRNRV+ Sbjct: 302 FGVVEKIDGDSLESLVGRADRLLYEAKNLGRNRVM 336 >gi|253699922|ref|YP_003021111.1| diguanylate cyclase [Geobacter sp. M21] gi|251774772|gb|ACT17353.1| diguanylate cyclase [Geobacter sp. M21] Length = 432 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 13/179 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 L+EL + + + D ++G+LN F L S Y L+I+F D+D FK I Sbjct: 253 LQELKQANALLESQATTDPVTGILNRRKFCELLESAIQESKRYGLPLAIIFLDVDRFKPI 312 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-K 201 ND +GH GD V+ L+ + + R GGEEF + + A +LA +R + Sbjct: 313 NDTYGHDAGDSVLRELAGLVSGMIRKTDIFARFGGEEFVLVVHNNDGRTARMLAEKIRSR 372 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++S I++ +T S G+A + +++ RADQA+Y AK +GRNRV D Sbjct: 373 VSQHSFIHVG-----QVTASFGVARLEPGDTPESLVKRADQAMYSAKHAGRNRVETCCD 426 >gi|170734510|ref|YP_001766457.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] gi|169817752|gb|ACA92335.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] Length = 452 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 14/178 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 ++LF ++ + + S D L+G N H+ F+ + E LS++ D+D+FK Sbjct: 275 QQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDHFKAY 333 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD + +++ L P V R GGEEFA + + A ++A+++R+ Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVADEVRE 393 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 + + + P+ +++S G A + +ST +I AD ALY AK +GRNRVV Sbjct: 394 AVLRLDLAMPDSPAGRVSVSVGCAT-VSADDLSTPDALIEAADAALYRAKDAGRNRVV 450 >gi|88859173|ref|ZP_01133814.1| sensory box/GGDEF domain protein [Pseudoalteromonas tunicata D2] gi|88819399|gb|EAR29213.1| sensory box/GGDEF domain protein [Pseudoalteromonas tunicata D2] Length = 426 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 90/166 (54%), Gaps = 14/166 (8%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ ID L+ L N +F + S + K I+ D+DYFK IND+FGH VGD+V Sbjct: 262 RLASIDELTQLANRRSFTTQGNSELARFLRHGCKFVILLLDLDYFKNINDSFGHAVGDEV 321 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA----NDLRKIIENSQINI 210 + +S+ V FV R+GGEEFA + + A ++A N+++KII N+ Sbjct: 322 LIAVSNCFVDTVRELDFVSRIGGEEFAIILPKTDVKAAYVIAERIRNNIKKIIVNTPFCQ 381 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SI I +S AE + I+ RAD+ALY AK +GR+ V+ Sbjct: 382 VKNLSISIGLSIVKAEDSE---LDHILLRADKALYEAKSAGRDCVI 424 >gi|307720988|ref|YP_003892128.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294] gi|306979081|gb|ADN09116.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294] Length = 520 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 11/177 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 +G + E + ++ +L+ ID L+G+ N F I Y LS++ FD+D Sbjct: 344 TGKDVTEQMLLEEKLRELAAIDKLTGISNRLRFDEVLQFSIDRAKRYKVNLSVILFDVDK 403 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK++ND +GH GD V+ ++ + R GG+EF EA IL Sbjct: 404 FKKVNDTYGHLCGDDVLKMIAKIGHDSIRKSDLIARWGGDEFIILQSDIPSDEAQILVER 463 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 LR IE+ +T+S G+ + ++I RAD ALY AK+ GRNRV Sbjct: 464 LRHNIESYNFKDVG----KVTVSFGVTHFKEDDTKESLIKRADDALYEAKEHGRNRV 516 >gi|242280925|ref|YP_002993054.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens DSM 2638] gi|242123819|gb|ACS81515.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens DSM 2638] Length = 299 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 20/189 (10%) Query: 82 LGYISGSILKELFISYNR----------ISQLSRIDCLSGLLNHS-------AFISSLGS 124 LG I+G+ E+F N + Q + D L+G+ N F S+ Sbjct: 108 LGQITGAA--EIFTEVNEKTDLAYDLELLRQEAMTDPLTGMANRRYMDQAAVHFEESIKH 165 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + L ++F DID FK +ND FGH GDK + ++ ++ R GGEEF Sbjct: 166 EKQSLGVLFVDIDNFKSVNDRFGHDTGDKALTMVAKTMLSALRPTDIASRWGGEEFVIFV 225 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 ++ LA +RK+IE S I+ SI +T S G E I + I RAD+ Sbjct: 226 PHVDAEKLGSLAERIRKLIELSWIDTEKA-SISVTASIGGTIVKPNETICSAIKRADEKA 284 Query: 245 YVAKKSGRN 253 Y+ K+SGRN Sbjct: 285 YLCKQSGRN 293 >gi|296159050|ref|ZP_06841877.1| diguanylate cyclase [Burkholderia sp. Ch1-1] gi|295890611|gb|EFG70402.1| diguanylate cyclase [Burkholderia sp. Ch1-1] Length = 563 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 27/183 (14%) Query: 90 LKELFISYNRI-SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141 L E S N + S +R D L+G L+ F+ L NE L + D+D+FKQ Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIERARVSNEPLCMAIADLDHFKQ 431 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-- 199 IND FGH GD+ + D +GRLGGEEF + A DL Sbjct: 432 INDRFGHAAGDRALEHFVDTCRAELRGADAIGRLGGEEFG----------LLLPATDLAG 481 Query: 200 -RKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 R+++E ++ + + P S+ +++S GI E + I+ RAD ALY AK GR Sbjct: 482 GREVVERLRLRLKAMPSPKLPASVGLSVSIGITELSADDLPERIMSRADTALYAAKSGGR 541 Query: 253 NRV 255 +R Sbjct: 542 DRT 544 >gi|258513411|ref|YP_003189633.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfotomaculum acetoxidans DSM 771] gi|257777116|gb|ACV61010.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfotomaculum acetoxidans DSM 771] Length = 738 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 9/173 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGD 152 +I L+ D L+ + N SL Y K +++ D+D FK +ND GH GD Sbjct: 305 QIKHLATHDYLTNIPNRYYLEESLKRYVAKAKRGTTSALLLLDLDNFKLVNDTKGHVAGD 364 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ + L + RLGG+EFA G S EA +A LR +I+N I +S Sbjct: 365 ELLIIFTKILKANLREEDLLTRLGGDEFAVLLEGISINEATEIAEKLRAVIDNQTIALSL 424 Query: 213 -GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 ++T+S G++ +PI I+ +AD+ALY+AK+SGRNRV+ +E+ Sbjct: 425 INVRFNLTVSIGLSMVDGSMDPIQ-ILSQADRALYIAKESGRNRVITIKGVED 476 >gi|167825369|ref|ZP_02456840.1| diguanylate cyclase [Burkholderia pseudomallei 9] gi|226198621|ref|ZP_03794187.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9] gi|225929364|gb|EEH25385.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9] Length = 454 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 9/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 +L+EL + ++ L+ D L+G N FI + S S++ D+D FK Sbjct: 277 GVLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFK 336 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 INDN+GH VGD V+ Q + + R+GGEEF A+ +A +R Sbjct: 337 TINDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVR 396 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 397 TTIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453 >gi|153010924|ref|YP_001372138.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] gi|151562812|gb|ABS16309.1| diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] Length = 381 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 78/162 (48%), Gaps = 6/162 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVI 155 R + +R D L+GLLN A L +L S+V FD+D FK IND GH VGD+V+ Sbjct: 214 RRHANEARTDSLTGLLNRRALYDVLDDNELQLGDSVVIFDLDAFKSINDTHGHIVGDEVL 273 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 S L + R+GGEEF + LA+ +RK S+G Sbjct: 274 YTFSGVLRSHVKGAALISRIGGEEFVLILRQKHNSDVLALADTIRKAFSAIVFEASAG-D 332 Query: 216 IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255 T SAGIA C E T+ RAD ALY AK GRN+V Sbjct: 333 FSTTTSAGIA-FCMPGNEDFQTVFRRADAALYRAKHLGRNKV 373 >gi|299068784|emb|CBJ40024.1| putative signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum CMR15] Length = 488 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 21/235 (8%) Query: 35 FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94 + +F+A +I+ + + G+ LV++ ++L + Y+ L+ Sbjct: 263 YPLFVAVGTATEDIYANWKARAWWIGM---------LVVLFNVVTLAMAYLFAQHLERRI 313 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147 R ++L+ D L+GL N A L + + LS++ D+D+FK ND++G Sbjct: 314 EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYG 373 Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 HP GD + ++ + P R GGEEF GS A+++A +R I Sbjct: 374 HPDGDAALQAVARCIQANLRRPGDLATRYGGEEFCVVLPGSDLDSASVVAETIRHAILVL 433 Query: 207 QINISSGPSIHITIS----AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + S +T+S +G+ ++ +T+ AD LY AK SGRNR + Sbjct: 434 NIPHARSASAVLTVSIGAASGMPASSGEQRAATLTRAADAQLYRAKTSGRNRTMS 488 >gi|115359701|ref|YP_776839.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria AMMD] gi|115284989|gb|ABI90505.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria AMMD] Length = 324 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 9/179 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +E + ++ + + D L+G+ N F + LG Y LS++ FD+D+FK Sbjct: 147 MQREREEAVAKLREHANRDGLTGIANRRFFEARLGDEFARWQRYGGDLSMLLFDLDHFKT 206 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH GD V+ + ++ + + GR GGEEFA ++ EA +A+ +R Sbjct: 207 INDRFGHAAGDAVLRETARRVASIVRSQDTFGRFGGEEFALLLPCTNLDEAMRVADKVRD 266 Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I ++ ++ + G S+ +T S G A ++ AD ALY AK+ GR+R + ++ Sbjct: 267 AIGSTPVD-AEGVSVPVTASVGGACATVGATAPDVLVNEADTALYRAKRLGRDRSIAYT 324 >gi|330820549|ref|YP_004349411.1| Diguanylate cyclase [Burkholderia gladioli BSR3] gi|327372544|gb|AEA63899.1| Diguanylate cyclase [Burkholderia gladioli BSR3] Length = 505 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 12/161 (7%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + +SL L+I+F DID+FK+ ND +GH +GD+V+A +S Sbjct: 339 DSLTGLPNRRSLDASLEREWRRAVRARRPLAILFVDIDHFKRYNDEYGHTLGDEVLASVS 398 Query: 160 DQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ + V R GGEEF + A +A +R + I + S ++ Sbjct: 399 ARIAQQALRSHDVVARYGGEEFVVVLPDTDSAGARTVAERIRDSVRQLGIEHAGAESGYV 458 Query: 219 TISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+A + + ++ +I ADQALY AK SGRNRV Sbjct: 459 TVSVGVATWRPDAGYPTNVAVVIDAADQALYRAKASGRNRV 499 >gi|323490722|ref|ZP_08095924.1| GGDEF domain-containing protein [Planococcus donghaensis MPA1U2] gi|323395604|gb|EGA88448.1| GGDEF domain-containing protein [Planococcus donghaensis MPA1U2] Length = 410 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 8/191 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132 L+L I ++L + + ++L ID +G+ N+ F + N LS++ Sbjct: 211 LILFLIVPALLLQNLLQKANSAELIYIDAKTGIYNYRHFDEKINELYKKSQKNNTSLSLI 270 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 F D+D+ + IN+ +GH GD I + + V R GGEEF +++ EA Sbjct: 271 FGDMDFLRNINNTYGHSTGDTAIIAVGKVFKQSQKSKFTVARFGGEEFVMLLPETTKAEA 330 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSG 251 A ++R+ ++N + + + +TIS G+A I ++I AD+ALY AK+ G Sbjct: 331 FCQAEEIRQNVQNLDVRSEANEKVSLTISLGVATYPEDATDIHSLIKTADEALYEAKRKG 390 Query: 252 RNRVVCFSDIE 262 RNRV + E Sbjct: 391 RNRVSLYEVAE 401 >gi|302877367|ref|YP_003845931.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302580156|gb|ADL54167.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 632 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 8/169 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL +S R+ L+ D L+GL N + L + + DID+FK +ND Sbjct: 460 ELALSNKRLQTLALTDALTGLPNRRYGMERLEQEWAIAMRAGRPVCCMMVDIDHFKAVND 519 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH +GD+ + ++ L V RLGGEEF S + A LR+ + Sbjct: 520 NYGHQLGDEALKLVALSLQQAARKQDVVCRLGGEEFMVICPDSDLRAGYTYAERLRQHVA 579 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I + G S+ +T+S G+ + + + ++++AD LY AK SGRN Sbjct: 580 AQPIQ-AQGKSLQLTVSIGLTDNANLDSTEAMLHQADTRLYAAKASGRN 627 >gi|254298091|ref|ZP_04965544.1| diguanylate cyclase [Burkholderia pseudomallei 406e] gi|157807902|gb|EDO85072.1| diguanylate cyclase [Burkholderia pseudomallei 406e] Length = 454 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 9/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 +L+EL + ++ L+ D L+G N FI + S S++ D+D FK Sbjct: 277 GVLQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQSEIARAKRDGTAFSLLALDLDNFK 336 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 INDN+GH VGD V+ Q + + R+GGEEF A+ +A +R Sbjct: 337 TINDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVR 396 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 397 TTIANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453 >gi|261210905|ref|ZP_05925195.1| GGDEF family protein [Vibrio sp. RC341] gi|260839880|gb|EEX66480.1| GGDEF family protein [Vibrio sp. RC341] Length = 443 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 15/166 (9%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G+LN AF L N KL+++FFD+D FK+IND GH VGD V+ Sbjct: 269 LSERDSLTGILNRRAFKQQLSQALVKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDIVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214 ++ +L F GRLGG+EF L + + +L N ++++ QI I + Sbjct: 329 QQIAQRLKGTIREADFCGRLGGDEF-VVCLDILQDHSGVL-NKAYQLLDKLQIPIQANEE 386 Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S++I +S GIA E+ + +S ++ AD+A+YVAK + + C Sbjct: 387 SLNIGVSIGIALYPEQASQ--MSELLRIADEAMYVAKHQSGSTIYC 430 >gi|325284815|ref|YP_004264277.1| diguanylate cyclase [Deinococcus proteolyticus MRP] gi|324316530|gb|ADY27642.1| diguanylate cyclase [Deinococcus proteolyticus MRP] Length = 355 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 107/238 (44%), Gaps = 29/238 (12%) Query: 40 ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR 99 A ++F+ +IF F+ G+ L +S I+LLL + GS EL R Sbjct: 128 AYLVFLVSIFYFH-------GVH-------QLPYLSAGITLLLLHYVGSHSYELLNVRQR 173 Query: 100 ISQLSRI---DCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQINDNFG 147 L+ + D L+GLLN L +++ +++ DID+FK IND G Sbjct: 174 AQHLAHLAAYDHLTGLLNRYGMEEKLRELWDRVQSHGNGDDATLLLLDIDHFKAINDQHG 233 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+V+ +S L VGR GGEEF S EA +L + L + + Sbjct: 234 HDVGDRVLRRVSRALTEACPEGQ-VGRWGGEEFLVVLPPISPSEAKLLPSRLTACLAATG 292 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 I G +T+S G + + + +I ADQ LY AK+ GR+RV S T Sbjct: 293 RAIPGGQP--VTLSGGGVQFSEADSLPQLIALADQRLYAAKRLGRDRVEWSSAANPQT 348 >gi|317049092|ref|YP_004116740.1| diguanylate cyclase [Pantoea sp. At-9b] gi|316950709|gb|ADU70184.1| diguanylate cyclase [Pantoea sp. At-9b] Length = 570 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 84/159 (52%), Gaps = 8/159 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+ + D ++ LLN + L + + +++ DID+FK++NDNFGH VGD+VI Sbjct: 400 RLKSEVQTDPMTNLLNRRGLGAVLDYFHAMRQPFAVLALDIDHFKRVNDNFGHDVGDEVI 459 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L V R GGEEF G+ +EA LA LRK I ++ I+ Sbjct: 460 KKVAQALRNSARQTDVVCRNGGEEFLMLLPGTPAEEARHLAERLRKNIADNWIDKVG--- 516 Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 +ITIS GIA + K + +AD ALY AK +GRN Sbjct: 517 -NITISVGIALWQPEKGTQEQSLKQADAALYQAKNAGRN 554 >gi|163849939|ref|YP_001637982.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163661544|gb|ABY28911.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 574 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 9/179 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQI 142 ++ L + + L+ D L+GLLN AF+ S Y + ++ DID+FK++ Sbjct: 387 VRRLGADLHAMQVLADTDALTGLLNRRAFLPLANDAMSYFMRYRRSICVLMIDIDHFKRV 446 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD+VI + + V R GGEEF + Q A I A +R+ Sbjct: 447 NDLYGHAAGDEVIRQVGRIIRDAIRATDKVARFGGEEFVVLLRETDLQGAVIFAERIRQT 506 Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + G + TIS G+A + I I RAD+ALY AK GRN V F D Sbjct: 507 VAGTVFE-PEGQCLRATISIGMAGAEVTDDDIDHTIERADRALYAAKSGGRNCVRTFED 564 >gi|217974216|ref|YP_002358967.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223] gi|217499351|gb|ACK47544.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS223] Length = 921 Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 10/171 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++ L+ D L+ L N F+ L N +L+ V D+D FK IND+FGH +G Sbjct: 492 QLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIG 551 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINI 210 D+++ L+ +L G + R+GG+EF A G E A +A N LR++ E I + Sbjct: 552 DEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNSEDATVAINQLRQVFEQPFI-V 610 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S+G + +T S G++ T++ AD A+Y AK GRN +++ Sbjct: 611 STGDHLRLTASMGVSLYPSDGADADTLLRNADAAMYRAKNDGRNNYAFYTE 661 >gi|71282021|ref|YP_267299.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71147761|gb|AAZ28234.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 613 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 108/220 (49%), Gaps = 14/220 (6%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L L I V N+ L+I +T+ +++ I G+ L+ S+ R+ LS D L+G+ N Sbjct: 387 LAAEQALSNIKVANIQLIITVMTLIIIMLIIWGA---RLWRSHKRVKALSEYDELTGIYN 443 Query: 115 HSAF----ISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 F +S+L S + LS++ FD+D FK+INDNFGH GD + + Sbjct: 444 RRHFTQIAVSTLKYCQSAEQDLSLIMFDLDNFKKINDNFGHICGDWALKETIRVCETIGR 503 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIENSQINISSGPSIHITISAGIAE 226 RLGGEEF L S E A+L A R IEN+ I SG IT S G+ + Sbjct: 504 KNDIFSRLGGEEF-CILLPSCNIEVAVLRAESCRAAIENT-ITEESGNDFSITASFGVTD 561 Query: 227 RCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + ++ AD A Y +K +GRNRV F E+ T Sbjct: 562 VARSGYNLEKLLIDADFAAYESKHAGRNRVTVFEPQEDET 601 >gi|61657342|emb|CAI44260.1| respons regulator [Thermotoga naphthophila RKU-10] Length = 479 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%) Query: 104 SRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 S D L+GL N A F+ + + +++ DID FK+IND FGHPVGD+V+ +++ Sbjct: 324 SETDGLTGLFNKRAIMRFLEEVLRSGKNIAVAMMDIDDFKKINDTFGHPVGDEVLRAVAN 383 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHIT 219 L + VGR GGEEF + E++A + N + + I N G +T Sbjct: 384 ILRETVKSGK-VGRYGGEEF-MVVFETGERDAVVKTMNSIMENIRNFDWQKIFGSEKKVT 441 Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+A + P+ +I AD+ LY AK+SG++R V Sbjct: 442 LSGGVAFSKKESSPVE-LIEEADKKLYTAKRSGKDRYV 478 >gi|238752511|ref|ZP_04613986.1| hypothetical protein yrohd0001_19570 [Yersinia rohdei ATCC 43380] gi|238709274|gb|EEQ01517.1| hypothetical protein yrohd0001_19570 [Yersinia rohdei ATCC 43380] Length = 415 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 13/159 (8%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N F + YN+ S++ D+D+FK IND GH GD+V+ L+ Sbjct: 260 DPLTNLGNRRQFFPLVEQAYTQSQRYNQNFSLILLDVDHFKSINDQLGHHKGDEVLILLA 319 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHI 218 L + V R GGEEFA ++ Q A LA +R+ I+ Q N+ + + Sbjct: 320 RTLESIVRESDSVFRWGGEEFAILLPLTNLQGALQLAESIRETIQMICQPNLPT-----L 374 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T+S G+A+ E ++ R D+ALY AK +GRNRV+ Sbjct: 375 TVSLGVAQHQVGEDTDSLFKRMDEALYRAKAAGRNRVLA 413 >gi|149925096|ref|ZP_01913407.1| FHA/GGDEF domain protein [Plesiocystis pacifica SIR-1] gi|149814024|gb|EDM73657.1| FHA/GGDEF domain protein [Plesiocystis pacifica SIR-1] Length = 307 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 10/162 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F + L S + + LS+V FDID+FKQIND++GH GD V+ L+ Sbjct: 138 DRLTGVFNRGYFNNRLESDVAFALRHGKPLSLVIFDIDFFKQINDDYGHAAGDAVLRDLA 197 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +++ + R GGEEF A+ AN +++++ + +G I I+ Sbjct: 198 ERVQGTTRSEDIFARYGGEEFVLICRDVDALRASRAANRIKELVSGKPFRL-AGRDIEIS 256 Query: 220 ISAGIAERCH-KEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259 +S G+++ EP ++ AD ALY AK++GRNRV + Sbjct: 257 VSLGVSDLSMLLEPSAQALVEAADSALYAAKRNGRNRVEIYD 298 >gi|77460528|ref|YP_350035.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gi|77384531|gb|ABA76044.1| putative GGDEF domain membrane protein [Pseudomonas fluorescens Pf0-1] Length = 350 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 16/210 (7%) Query: 59 YGLEYILVENLSLVIISITI----SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 +G+ + L + V + + L LG + + +L +S LSR D L+GLLN Sbjct: 135 FGVHFTLTATQTQVWACLPMLTLYPLALGMVCYRLAIKLAEHKRTLSALSRTDSLTGLLN 194 Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 H A+ L +N + + DID+FK IND++GH VGD V+ LS +L V Sbjct: 195 HGAWKDLLHLKFQQCRQHNSQAILALIDIDHFKSINDSYGHIVGDAVLRQLSHELKFVLD 254 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 GR GG+EF +A L LR+ ++ + S + +++S G+A R Sbjct: 255 ESKLAGRYGGDEFCVILPNLPLSKAEALMEQLRQALDRYRHPDVS--ELRVSLSIGLA-R 311 Query: 228 CHKEPISTIIY--RADQALYVAKKSGRNRV 255 + + +D+ALY AK +GRN + Sbjct: 312 YQTSYADALEWFEDSDKALYTAKHTGRNTI 341 >gi|315266684|gb|ADT93537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS678] Length = 920 Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 10/171 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++ L+ D L+ L N F+ L N +L+ V D+D FK IND+FGH +G Sbjct: 491 QLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIG 550 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINI 210 D+++ L+ +L G + R+GG+EF A G E A +A N LR++ E I + Sbjct: 551 DEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQVFEQPFI-V 609 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S+G + +T S G++ + T++ AD A+Y AK GRN +++ Sbjct: 610 STGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTE 660 >gi|307726170|ref|YP_003909383.1| diguanylate cyclase [Burkholderia sp. CCGE1003] gi|307586695|gb|ADN60092.1| diguanylate cyclase [Burkholderia sp. CCGE1003] Length = 607 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 93/190 (48%), Gaps = 25/190 (13%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140 S + L + + L+ D L+GL N + F+ L E L+++F D+D FK Sbjct: 394 SQMDALHVKQRELVHLATHDVLTGLPNRTLFMEKLERAIQDATRRREGLAVLFVDLDRFK 453 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA------I 194 QIND FGH VGDKV+ ++ +L V + V RLGG+EF G EAA I Sbjct: 454 QINDQFGHSVGDKVLVAVARRLKQVLHSADVVARLGGDEFIVLIEGPRSAEAAPGVASRI 513 Query: 195 LANDLRKIIENSQINISSGPSIHITI---SAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + +I+ + Q ++ G SI I+ +G AE ++ AD A+YVAK G Sbjct: 514 MTTLNEEIVMDGQ-GMTVGASIGISQFPDDSGTAE--------ELLLNADAAMYVAKSGG 564 Query: 252 RNRVVCFSDI 261 R + + D+ Sbjct: 565 RCAYLRYQDV 574 >gi|218509426|ref|ZP_03507304.1| probable two-component response regulator protein [Rhizobium etli Brasil 5] Length = 379 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 11/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQIND 144 E ++ + D L+GL N F + NE L S+ DID+FK++ND Sbjct: 197 ETLAQMRQLRAAAACDYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLND 256 Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH +GDKV+ ++++L +F G+ + RLGGEEFA A L +++R I Sbjct: 257 TYGHEIGDKVLKAVANRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDI 316 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ + + +TIS GIAE E + ADQ LY+AK GRN+V +SD Sbjct: 317 SRLKV-TADDEELGVTISIGIAEIGGYETFENYLNAADQFLYMAKHRGRNQV--YSD 370 >gi|134283392|ref|ZP_01770092.1| ggdef domain protein [Burkholderia pseudomallei 305] gi|134245141|gb|EBA45235.1| ggdef domain protein [Burkholderia pseudomallei 305] Length = 454 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 9/175 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 LKEL + ++ L+ D L+G N FI + S S++ D+D FK I Sbjct: 279 LKELQHTNQKLEYLASTDPLTGASNRRKFIEQMQSEIARAKCDGTAFSLLALDLDNFKTI 338 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 NDN+GH +GD V+ + V + R+GGEEF A+ +A +R Sbjct: 339 NDNYGHQIGDVVLRNFVRRCVAAIRPCDHIARVGGEEFMVLLPRMFADAASEIAERVRAA 398 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 I N+ I G I +T+S G+++ + + II AD+ LY AK GRNRVV Sbjct: 399 IANASFGI-GGKRIGVTVSIGVSQYGRDGDTLDDIINAADKLLYRAKNEGRNRVV 452 >gi|160874448|ref|YP_001553764.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195] gi|160859970|gb|ABX48504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS195] Length = 921 Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 10/171 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++ L+ D L+ L N F+ L N +L+ V D+D FK IND+FGH +G Sbjct: 492 QLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIG 551 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINI 210 D+++ L+ +L G + R+GG+EF A G E A +A N LR++ E I + Sbjct: 552 DEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQVFEQPFI-V 610 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S+G + +T S G++ + T++ AD A+Y AK GRN +++ Sbjct: 611 STGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTE 661 >gi|126173489|ref|YP_001049638.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS155] gi|125996694|gb|ABN60769.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS155] Length = 921 Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 10/171 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++ L+ D L+ L N F+ L N +L+ V D+D FK IND+FGH +G Sbjct: 492 QLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIG 551 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINI 210 D+++ L+ +L G + R+GG+EF A G E A +A N LR++ E I + Sbjct: 552 DEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQVFEQPFI-V 610 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S+G + +T S G++ + T++ AD A+Y AK GRN +++ Sbjct: 611 STGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTE 661 >gi|301025565|ref|ZP_07189090.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] gi|300395946|gb|EFJ79484.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] Length = 346 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 NR+ L+ D L+G+ N A S L + +++ D+D+FK+ ND +GHP GD+ Sbjct: 182 NRLDALAHRDPLTGIANRRAMNSILHDAMDNGGSFALIMLDVDFFKRYNDTYGHPAGDRC 241 Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 + ++D L + V R GGEEFA ++ EA +A +++ ++ + I + +S Sbjct: 242 LIQVADALQRSTRQSEDVVVRYGGEEFAIILFNATLPEAETVAARVKQELKLAAIPHQAS 301 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S GI + II AD ALY AK+SGRNR Sbjct: 302 AVNAFVTVSQGITCSAPAKTAEQIISDADAALYRAKESGRNR 343 >gi|157165714|ref|YP_001467045.1| GGDEF domain-containing protein [Campylobacter concisus 13826] gi|112800429|gb|EAT97773.1| diguanylate cyclase [Campylobacter concisus 13826] Length = 524 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 8/160 (5%) Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S+ D L+ + A +S + Y SI F DID+FK+IND +GH GD +++ Sbjct: 359 SKEDFLTKVATKRALMSEIQRIEEAYKRYGTDYSICFVDIDFFKKINDTYGHEAGDVILS 418 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L FVGR GGEEF +S ++ LR +IEN + I I Sbjct: 419 AVAQVLKKNARKVDFVGRYGGEEFVILLPSTSLKDGVRFGEKLRSMIENFKF-IYKNERI 477 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +TIS+G+A R + + AD+ LY++K+ GRN+V+ Sbjct: 478 KVTISSGVATRSANLSDTMTLEGADKMLYLSKEGGRNQVM 517 >gi|114562656|ref|YP_750169.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114333949|gb|ABI71331.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 341 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 107 DCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+ +LN AF + +GS ++ DID+FK NDNFGH +GD V+ ++ ++ Sbjct: 182 DALTNVLNRRAFNTDIEAQIGSAPAGTCMILIDIDHFKTFNDNFGHQLGDLVLKTVAKRI 241 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITI 220 + + R GGEEFA S + A LA +R+ +E + + IT Sbjct: 242 QEACRDGIKLYRFGGEEFAIIVPSSQFRVARQLAEGIRRALEKLSVKDRRSDKVIDSITA 301 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+AE K+ +S +I D+ LY AK+ GRNRV+ Sbjct: 302 SFGVAEWKAKQSVSQLIEATDKLLYEAKRLGRNRVM 337 >gi|311279104|ref|YP_003941335.1| diguanylate cyclase [Enterobacter cloacae SCF1] gi|308748299|gb|ADO48051.1| diguanylate cyclase [Enterobacter cloacae SCF1] Length = 564 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 9/160 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N + S + ++++ D+D FK IND FGH GD+V+A + Sbjct: 398 DGLTRLFNRGTLFERANTAMKSCREQQKPIAVIQMDLDCFKSINDRFGHQAGDRVLAHTA 457 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + G+ GR+GGEEF G++++ A + A +R+ I + ++ + G + I+ Sbjct: 458 GLISSRIGSADLAGRVGGEEFCIVLPGATKEAACLTAERIRERINSRELLLGKGVMLRIS 517 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S G+ ++ + + + AD+ LY AK+ GRNRV C Sbjct: 518 ASFGVSGSDESGQYDVEFLQSVADKRLYQAKQDGRNRVCC 557 >gi|269102594|ref|ZP_06155291.1| GGDEF family protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162492|gb|EEZ40988.1| GGDEF family protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 434 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKL----SIVFFDIDYFKQIN 143 K LF R +L+ ID L+ N +A ++ + +++ + S+++ DID+FK+IN Sbjct: 263 KVLFEKSLRFEELAYIDPLTKAKNRNAVSDWVRQVVEHSKDMAQPFSVIYIDIDFFKKIN 322 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD+V+A +D L + R GGEEF +S A A LR+ I Sbjct: 323 DKYGHGRGDEVLAKFADLLRRNIDKSDMLVRWGGEEFVVFCPSTSLGVVAEKAELLREAI 382 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 Q G +T S G+A+ E + ++ RAD+ALY AK+ GRNRV Sbjct: 383 AEYQW----GNEFSVTCSLGVAQ-LENEEFNRLMERADEALYKAKERGRNRV 429 >gi|258622540|ref|ZP_05717562.1| sensory box/GGDEF family protein [Vibrio mimicus VM573] gi|258585240|gb|EEW09967.1| sensory box/GGDEF family protein [Vibrio mimicus VM573] Length = 308 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 86/171 (50%), Gaps = 13/171 (7%) Query: 98 NRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 ++ QL+ D L+ L N SAF + S + LS + DID FKQIND+FGH Sbjct: 138 EQLYQLANTDALTQLCNRRKLWADFRSAFARAKHS-KQPLSCISIDIDNFKQINDHFGHD 196 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ FL+ + GR+GGEEF + A LA +R+ SQ + Sbjct: 197 KGDEVLCFLAQLFYELTSEHHICGRVGGEEFIIVLEDTPVATAFALAEQIRQRF--SQHS 254 Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 H+ + AG+A R + I R+DQALY AK+SGRNR ++ Sbjct: 255 FFEQKE-HVYLCAGVATMRLSDHDFTDIYRRSDQALYQAKRSGRNRCCIYN 304 >gi|149377858|ref|ZP_01895588.1| probable transmembrane protein [Marinobacter algicola DG893] gi|149357860|gb|EDM46352.1| probable transmembrane protein [Marinobacter algicola DG893] Length = 784 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 85/168 (50%), Gaps = 9/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLS---IVFFDIDYFKQINDNFGHPV 150 R+S + D L+GLLN AF SSL N+K + ++ D+DYFK +ND GH + Sbjct: 608 ERLSWEATHDSLTGLLNRRAFNSSLVKCLADANKKTAASVMMLIDLDYFKPVNDEGGHLL 667 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ LSD L V RLGG+EF +Q A LA +R IE +I Sbjct: 668 GDDLLGRLSDLLTQSVRQSDTVARLGGDEFGIILPACGQQRAVELAEKIRAGIEAMRIE- 726 Query: 211 SSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257 G + +T S G+ E + ++ RAD+ Y AK GRNRVV Sbjct: 727 QDGKTFGVTASIGLTEMSDADTGPREVVARADEGTYAAKAQGRNRVVA 774 >gi|113868397|ref|YP_726886.1| GGDEF domain-containing protein [Ralstonia eutropha H16] gi|113527173|emb|CAJ93518.1| GGDEF domain protein [Ralstonia eutropha H16] Length = 419 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 12/171 (7%) Query: 94 FISYNRISQL----SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 ++++R+ ++ +R D L+ +L AF L + + L++ F D+D+FK I Sbjct: 218 LMAHDRLRRMLERRARHDDLTDVLLRGAFWEELEAACLRAERQRKPLTVAFVDLDHFKAI 277 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD V+ + QL FG GRLGGEEFA ++ ++ + L Sbjct: 278 NDVYGHLAGDSVLRHFAGQLRKNFGQLEVAGRLGGEEFAILMPDTALEQGRLACLRLATA 337 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + P I T+S G+A R E ++ RAD+ALY AK GRN Sbjct: 338 VRATPCPSEPDP-IAYTVSIGLAARQPGEGADALMRRADRALYDAKLKGRN 387 >gi|83716350|ref|YP_438601.1| GGDEF domain-containing protein [Burkholderia thailandensis E264] gi|83650175|gb|ABC34239.1| GGDEF domain protein [Burkholderia thailandensis E264] Length = 507 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 17/187 (9%) Query: 85 ISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132 + G+ L + + R + +L+R D L+GL N AF +L S LS++ Sbjct: 316 VGGTALLSRELRWRRHAELHLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLL 375 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQE 191 F DID FK ND++GH GD V+ + L + V V R GGEEF + Sbjct: 376 FVDIDQFKAYNDHYGHQAGDDVLREVGRCLALNVRRAADDVSRYGGEEFVITLPDIDAKS 435 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAK 248 AA +A +R+ + + I P +T+S G+ H+ +T++ AD ALY AK Sbjct: 436 AAAIAEHIRRAVYDLDIEHVRSPYARVTVSIGLVT-SHEHAAHSDTTLVKMADAALYQAK 494 Query: 249 KSGRNRV 255 +GRNRV Sbjct: 495 STGRNRV 501 >gi|298292251|ref|YP_003694190.1| diguanylate cyclase [Starkeya novella DSM 506] gi|296928762|gb|ADH89571.1| diguanylate cyclase [Starkeya novella DSM 506] Length = 414 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 8/173 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISS------LG-SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L+GL N I LG + ++ S++ DID FK INDN GH GD Sbjct: 236 LRHLAVSDPLTGLWNRRRLIEEGQRELELGATAGKECSLLIVDIDRFKSINDNHGHAAGD 295 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ + + + R+GGEEFA G+S EA +A L + I + I Sbjct: 296 EVLRTVAQRGLSQLRRSDVMARIGGEEFAVLLPGTSALEARTIAARLLRAI-RVPVVIGD 354 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 I +T S G ++ + ++ R D+ALY AK GRNRVV DI T Sbjct: 355 DVVIEVTASIGGTGSTPEDDMDALMARCDRALYAAKTGGRNRVVFDDDISPPT 407 >gi|258625575|ref|ZP_05720463.1| GGDEF family protein [Vibrio mimicus VM603] gi|258582168|gb|EEW07029.1| GGDEF family protein [Vibrio mimicus VM603] Length = 326 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQI 142 +++ +Y I S D L+GLLN I+ N +L I D+D+FK I Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRNTFAINPSAEGNHQLWIAMLDLDHFKAI 191 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+FGH +GD+++ + Q+ FG + R GGEEF EQ + R+ Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIVFSSGDEQAINRTLDGFRRH 251 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I P I ++ SAG + + TI+ AD+ALY AK+ GR++V C+ ++ Sbjct: 252 IRQHTF-----PRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRDQVHCYENL 306 >gi|257094919|ref|YP_003168560.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047443|gb|ACV36631.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 530 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 25/173 (14%) Query: 98 NR-ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------------SIVFFDIDYFKQI 142 NR ++QL+++D L+GL N S NE+L +++F DID+FK+I Sbjct: 365 NRELAQLAQVDALTGLQNRK-------SANERLRLEFLRLQRSSNPYAVLFMDIDFFKEI 417 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD+V+ ++ L FV R GGEEF A ++ + A +A +R Sbjct: 418 NDTYGHETGDQVLRHMATVLTASLRQTDFVARYGGEEFLAILSETNAEGALTIAEIVRSS 477 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + ++ I ++ + E +E + + RAD ALY AK+ GRN V Sbjct: 478 VAQQAFPGARQVTLSIGVAMALGEDKDEE---SAVRRADTALYRAKEDGRNAV 527 >gi|229587663|ref|YP_002869782.1| hypothetical protein PFLU0085 [Pseudomonas fluorescens SBW25] gi|229359529|emb|CAY46370.1| conserved GGDEF domain protein [Pseudomonas fluorescens SBW25] Length = 684 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 86/163 (52%), Gaps = 8/163 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ L +++++ LS+ D+D+FK+IND +GH GD+V Sbjct: 522 QKALIDPLTGLPNRAAWSERLDHEVNAWHQRGNSLSLAMLDLDHFKRINDGYGHLAGDRV 581 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ L F+ R GGEEF SS +A LR IE + P Sbjct: 582 LKIIANVLRKRLRPTDFIARFGGEEFVLLMPDSSLADALAAVEVLRGAIEACPFHFKGEP 641 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + IT+S G+A+ E + RAD ALY AK +GRN+V Sbjct: 642 -VTITVSMGVAQFQPGERSDLALKRADAALYRAKAAGRNQVQA 683 >gi|78221296|ref|YP_383043.1| response regulator receiver modulated diguanylate cyclase [Geobacter metallireducens GS-15] gi|78192551|gb|ABB30318.1| response regulator receiver modulated diguanylate cyclase [Geobacter metallireducens GS-15] Length = 314 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 87/173 (50%), Gaps = 10/173 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL S + LS D L+ L N + + ++ LS+V DIDYFK+IND Sbjct: 130 ELKRSNEMLRTLSITDPLTHLHNRRHLMEMVDKEFQRSSRKGAPLSLVILDIDYFKKIND 189 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ L+D + + R GGEEF + QEA +A LR ++ Sbjct: 190 TYGHQEGDRVLTILADIVRRRLRSYDLAARYGGEEFVLLLPETPVQEALSIAERLRLEVQ 249 Query: 205 NSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G + ITIS G+A E I ++ +AD+ALY AK+ GRNRV Sbjct: 250 EHVFEGSLG-GLVITISLGVATYPSSRVESIDSLFRQADEALYRAKQGGRNRV 301 >gi|254248940|ref|ZP_04942260.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] gi|124875441|gb|EAY65431.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] Length = 510 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 9/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 LK + ++ +L+ D L+GL N F + L ++ LS++F D+D+FK Sbjct: 326 LKRRQDAEAKLYRLAHTDSLTGLDNRGTFDTVLAKETQRASRSGRPLSVLFVDVDHFKAF 385 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GHP GD V+ ++ L V R GGEEF + AA +A +R+ Sbjct: 386 NDYYGHPAGDDVLRQVAQSLSRCLRRDSDQVARYGGEEFVVTLPDTDGPGAATVAEGIRR 445 Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256 I I +T+S G A + +T++ RAD+ALY AK GRNRV+ Sbjct: 446 AISELGIEHVKSQYGRVTVSIGTATADDGRMNAATLLRRADEALYRAKSGGRNRVL 501 >gi|330831120|ref|YP_004394072.1| GGDEF domain-containing protein [Aeromonas veronii B565] gi|328806256|gb|AEB51455.1| GGDEF domain protein [Aeromonas veronii B565] Length = 614 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 11/188 (5%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEK 128 + + +L G ++ + L R+ +L+ D L+G+ N S ++ Sbjct: 426 LVVMVLCGVLALLTMGWLLDRNRRMRRLAFTDELTGINNRRRVLRQGSDMLALARRQGTP 485 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 ++ FDID+FK+IND GH GD+V+ ++S +GR GGEEF +S Sbjct: 486 FCLLVFDIDHFKRINDTLGHHQGDRVLQWVSRAADRQLRHQDQLGRTGGEEFLILLPDTS 545 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 +EA +A +R + N + G S +TIS G A R + ++ +I RAD ALY A Sbjct: 546 LEEACRVAERIRHTVANRAL---PGMSYPVTISIGCASLRDDDQDLAALIQRADNALYRA 602 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 603 KEAGRNRV 610 >gi|297539643|ref|YP_003675412.1| diguanylate cyclase [Methylotenera sp. 301] gi|297258990|gb|ADI30835.1| diguanylate cyclase [Methylotenera sp. 301] Length = 327 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 8/186 (4%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDID 137 ++ + ++L + + L+RID L+ N AF ++ E +V DID Sbjct: 136 VNKELEQKLRDAKQKAETLARIDPLTNAYNRRAFFENVPRALEGALRKVTPFCLVMVDID 195 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FKQ+ND +GH GD+ + L + + + + R GG+EF L ++++AA L + Sbjct: 196 HFKQLNDVYGHNRGDEALTSLIEIMKINARASDLLYRFGGDEFVMVLLDCTDEQAAELIH 255 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +R + S I S +I +T S G+++ I ++++ AD+ALY K GR+RV Sbjct: 256 RIRVGLTASPIR-SGSTNILLTCSFGVSQARPDSTIESLMHEADEALYAGKSEGRDRVKL 314 Query: 258 FSDIEN 263 + +++N Sbjct: 315 YRNLKN 320 >gi|294341946|emb|CAZ90375.1| hypothetical protein; putative membrane protein [Thiomonas sp. 3As] Length = 523 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 11/172 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ L+ D L+GL N F + + + I+ D+D+FKQIND +GHPV Sbjct: 354 QQLRALAHTDPLTGLQNRRGFFAMVEHALRTRPAGQPGPCIMLIDLDHFKQINDRYGHPV 413 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ + ++ + R+GGEEF + +A +A +R+ + Sbjct: 414 GDEILVEFAQVVLSLLREGDVFARMGGEEFCILLAHTRASQALEVAERVREFVAAHPFQT 473 Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S+G + +++S GIA C + I ++ ADQA+Y AK+ GRNR + D Sbjct: 474 SAG-VVRLSLSLGIAG-CDAPVQSIDRVLSMADQAMYRAKQGGRNRTELYCD 523 >gi|170681992|ref|YP_001743683.1| hypothetical protein EcSMS35_1629 [Escherichia coli SMS-3-5] gi|218700190|ref|YP_002407819.1| hypothetical protein ECIAI39_1839 [Escherichia coli IAI39] gi|170519710|gb|ACB17888.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli SMS-3-5] gi|218370176|emb|CAR17970.1| conserved hypothetical protein [Escherichia coli IAI39] Length = 296 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF +++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKADNDEEACRAGIRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|39998465|ref|NP_954416.1| GGDEF/response regulator receiver domain-containing protein [Geobacter sulfurreducens PCA] gi|39985412|gb|AAR36766.1| GGDEF/response regulator receiver domain protein [Geobacter sulfurreducens PCA] gi|298507409|gb|ADI86132.1| response receiver-modulated diguanylate cyclase [Geobacter sulfurreducens KN400] Length = 308 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 94/180 (52%), Gaps = 16/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL S + +LS D L+ L N + + ++ LS+V DIDYFK+IND Sbjct: 130 ELKRSNELLRKLSITDPLTHLHNRRHLMEMVDKEFQRASRKGGALSLVILDIDYFKKIND 189 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GDKV+ L+D + + + R GGEEF + QEA +A LR ++ Sbjct: 190 TYGHQEGDKVLVALADIVRLRLRSYDVAARYGGEEFVLLLPETPLQEAQAIAERLRLEVQ 249 Query: 205 NSQINISSGPSIH---ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + ++ G S+H ITIS G+A E ++ +AD+ALY AK++GRNRV S Sbjct: 250 D---HVFDG-SLHGQVITISLGVATYPSPRIEGTDSLFRQADEALYRAKQNGRNRVELMS 305 >gi|330810628|ref|YP_004355090.1| diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378736|gb|AEA70086.1| putative diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 361 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 87/187 (46%), Gaps = 21/187 (11%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----------SIV 132 YI G +EL LSR D L+GLLNH A+ L ++ +I Sbjct: 171 YILGRQKRELLA-------LSRTDSLTGLLNHGAWKDRLNEEFQRCQRHPNDGAGRGAIA 223 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK IND +GH GD V+ L L VGR GG+EF + A Sbjct: 224 LIDIDHFKAINDTYGHVAGDIVLRQLGKMLKQNLRAADVVGRYGGDEFCVILPDLTLHNA 283 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSG 251 + LR+ + ++ P++ +++S G+A +T + ADQALY AK G Sbjct: 284 VQAMDGLRERF--ATLSYEQNPALKVSLSIGLAAFNPAYGDATHWLNDADQALYEAKTGG 341 Query: 252 RNRVVCF 258 RNRV C+ Sbjct: 342 RNRVTCY 348 >gi|189424367|ref|YP_001951544.1| diguanylate cyclase [Geobacter lovleyi SZ] gi|189420626|gb|ACD95024.1| diguanylate cyclase [Geobacter lovleyi SZ] Length = 237 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 9/175 (5%) Query: 90 LKELFISYNRISQL-SRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141 L+ ++ NR L +RID ++GL N A + S + SI+ D+DYFK+ Sbjct: 61 LQTQLVNMNRSLDLATRIDPMTGLANRRAIMEMIEQEFSRAHRHQRPASIIMADLDYFKK 120 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND G GD V+ +S L R GGEEF + A +AN +R+ Sbjct: 121 VNDTHGFNTGDDVLVEVSRVLRGCLRNEDICSRWGGEEFLVLLPETQLDGALAVANKIRE 180 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ ++ P I +TIS G+ E + I I RADQAL+ AK GRNR + Sbjct: 181 SVAMTEFKVNR-PGIQLTISLGVCEYKPDQNIFEAISRADQALFQAKLGGRNRAI 234 >gi|108763732|ref|YP_631891.1| GAF domain/GGDEF domain-containing protein [Myxococcus xanthus DK 1622] gi|108467612|gb|ABF92797.1| GAF domain/GGDEF domain protein [Myxococcus xanthus DK 1622] Length = 710 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 15/172 (8%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y ++ +++ D L+GL NH F ++ Y K S++ D+D+FK +ND +GHP Sbjct: 526 YEQMERMATTDGLTGLYNHRTFQAKADEVLAQSRRYQRKFSLILTDVDHFKSVNDTYGHP 585 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ ++ + + V R GGEEF + + A ++ +R+ ++ Sbjct: 586 TGDQVLKGVARIIKTMARDTDIVARYGGEEFVIIMPETDAKGAFTISERIREAVKAEVFQ 645 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 GP + IT+S GIA K+ +I ADQ LY +K++GRN+ V Sbjct: 646 TEMGP-LRITMSLGIATFPDSAMEKQ---QLIDLADQCLYHSKRNGRNQSVT 693 >gi|309779657|ref|ZP_07674416.1| ggdef domain protein [Ralstonia sp. 5_7_47FAA] gi|308921598|gb|EFP67236.1| ggdef domain protein [Ralstonia sp. 5_7_47FAA] Length = 459 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 21/184 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 + L + +R+ + S +D L+ + N AF + +++ LS++ DID+FKQIN Sbjct: 277 RALMAANHRLERQSLLDGLTQVGNRQAFDRCWAAESKRARRTGQPLSVLMVDIDHFKQIN 336 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGT-PM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 D +GH GD + +++ L V G P V R GGEEF + A ++A +R+ Sbjct: 337 DTYGHGRGDACLVEVANILSRVAGKRPTDLVARYGGEEFVVLLADTERSRAKVIAEQVRR 396 Query: 202 IIENSQINISSGPSIH--ITISAGI---AERCHKEPI----STIIYRADQALYVAKKSGR 252 +E + + PS+ +T+S G+ A P+ S + +AD ALY AK++GR Sbjct: 397 AVEQAAL---PAPSVRGVVTVSIGVAAYAPSADHAPVADATSEALMQADMALYDAKRAGR 453 Query: 253 NRVV 256 N V+ Sbjct: 454 NAVM 457 >gi|330829722|ref|YP_004392674.1| sensory box/GGDEF domain-containing protein [Aeromonas veronii B565] gi|328804858|gb|AEB50057.1| Sensory box/GGDEF domain protein [Aeromonas veronii B565] Length = 431 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 114/253 (45%), Gaps = 26/253 (10%) Query: 17 KNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVII 74 K LE+ P F +F F ++ I P + + L + S + Sbjct: 179 KRLETLLPQRFRANHETYFKAFSSSPI----------NSRPMHARASVMGLRRDGSEFPL 228 Query: 75 SITISLL-LGYIS--GSILKELFISYNRISQL---SRIDCLSGLLNHSAF-------ISS 121 +TI+ + LG + +IL+++ + +L + D L+G+ N F + Sbjct: 229 EVTIAKINLGPTTEMTAILRDISERARLVEELKVAATTDPLTGIANRRRFNELVNAEMQR 288 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + +S++ DID+FK++ND FGH GD I L ++ +GR GGEEF Sbjct: 289 CQRFGHTMSLLLIDIDHFKEVNDTFGHQQGDLAILSLVKRISKQLREVDMLGRWGGEEFI 348 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRA 240 +S + A A +R IE+ + I +TIS GI A + + + ++ RA Sbjct: 349 VLLPETSLELAWASAERIRLAIESQHHALEGALEISLTISIGISASKGSHDTVEKMVRRA 408 Query: 241 DQALYVAKKSGRN 253 D ALY+AKK GRN Sbjct: 409 DTALYLAKKQGRN 421 >gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [Janthinobacterium sp. Marseille] gi|151282785|gb|ABR91195.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 528 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L + ++S+L R D L+G LN I+ L I D+D FK+IND Sbjct: 356 LELQLEQMSELVREDQLTGSLNRRGLDDVLEREIARADRRASPLCIAMLDLDDFKKINDK 415 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD+ + L + T + R GGEEF + +EA + L++ + Sbjct: 416 YGHMAGDEALIHLVRVIKDTLRTMDVIARFGGEEFLIVLPDTPLEEAILTITRLQREL-T 474 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 QI + + + +T SAG+A R +E + ++ RAD ALY AKK+G+NRV+ Sbjct: 475 KQIFMHNHTRLLMTFSAGVALRKEREDQAAMVKRADIALYEAKKAGKNRVI 525 >gi|303246638|ref|ZP_07332916.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] gi|302491978|gb|EFL51856.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] Length = 730 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 8/162 (4%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F +L LS++ DIDYFK ND++GH GD+ + FL+ Sbjct: 569 DALTGLKNRRFFDDALEREIAQALKQQSDLSLIMLDIDYFKFFNDSYGHAAGDEALRFLA 628 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +Q+ F + R GGEEF + E +L + I S I + IT Sbjct: 629 EQMNKTFRHTDIICRYGGEEFVILMPHAKASECHARVLELLQTIARSTIQYAGRDLGTIT 688 Query: 220 ISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S GI+ E ++ AD+ALY AK+ GRNRVV + + Sbjct: 689 LSVGISSWPSFVENPQELLSHADRALYQAKERGRNRVVLYGE 730 >gi|256831247|ref|YP_003159975.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gi|256580423|gb|ACU91559.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] Length = 345 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 29/185 (15%) Query: 102 QLSRIDCLSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++S D L+ L N AF ++L Y +S++F DID+FK ND++GH +GD+ Sbjct: 163 EMSYTDSLTKLSNRRAFDRYYQTTLVEYMVTGNPMSLMFLDIDHFKDFNDSYGHRIGDQA 222 Query: 155 IAFLSDQLV---VVFGT----PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--- 204 + ++ +L +GT F R GGEEF G EAA A +LR IIE Sbjct: 223 LVTVASKLTGYAQKYGTVPNRSFFPARFGGEEFVVVLPGVGLGEAAEDAENLRTIIEDYN 282 Query: 205 ------NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 N Q+ + G I IT+S G+AE E + ++ AD+A+Y AK GRNRV Sbjct: 283 FIIRDHNGQV-LQKG--IKITVSIGVAELKKDWADEAGARLLDEADKAMYRAKGRGRNRV 339 Query: 256 VCFSD 260 ++ Sbjct: 340 CTMNE 344 >gi|157147009|ref|YP_001454328.1| diguanylate cyclase AdrA [Citrobacter koseri ATCC BAA-895] gi|157084214|gb|ABV13892.1| hypothetical protein CKO_02786 [Citrobacter koseri ATCC BAA-895] Length = 365 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 23/199 (11%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122 SL +I I LL ++S +L R+ +S D ++G+ N + + Sbjct: 171 SLPVIVI-YPLLFAWVSYQTATKLAEHKRRLQVMSMRDGMTGVYNRRHWEILLRNEFDNC 229 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 Y+ +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 230 RRYHRDATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQMTLRGSDVIGRFGGDEFAV 289 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII--YR- 239 G+ A + + + + + + + P + + IS G+A P++T I YR Sbjct: 290 IMCGTPADNAIAAMSRVHERL--NALRLPCAPQVILRISVGVA------PLTTQIGHYRE 341 Query: 240 ----ADQALYVAKKSGRNR 254 AD ALY AK +GRNR Sbjct: 342 WLKSADMALYKAKNAGRNR 360 >gi|330821779|ref|YP_004350641.1| diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3] gi|327373774|gb|AEA65129.1| diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3] Length = 1065 Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 89/175 (50%), Gaps = 14/175 (8%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGH 148 S RI L+ D L+ L N + F LG+ E +L+++F D+D FK IND FGH Sbjct: 621 SEARIQFLAEHDVLTELPNRALFTRRLGTAIEQARHNDSRLAVLFIDLDRFKDINDTFGH 680 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKII-EN 205 GD ++ +S +L+ V RLGG+EF GS+ A +L L ++ E Sbjct: 681 HAGDGLLRSVSQRLLQSVRAGDTVSRLGGDEFTVLLGGAGSAADVAHLLDERLLPLMQEP 740 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 QI G ++ + S GIA H E I T++ AD A+Y AK GRN V FS Sbjct: 741 HQI---GGMTLQVACSIGIALYPDHGEDIETLMQNADAAMYRAKSGGRNLVKFFS 792 >gi|313617752|gb|EFR89993.1| ggdef domain-containing protein [Listeria innocua FSL S4-378] Length = 183 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 11/176 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEKLSIVFFDIDYFKQINDNFGHP 149 K+LF Y + S L + LS + I+ + + + +++++ DIDYFK IND +GH Sbjct: 11 KQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDAGSRQVTLMLIDIDYFKNINDTYGHD 70 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GD ++ QL ++ G R GGEEF+ L ++ A +RK E Sbjct: 71 AGDAILK----QLAIILKRNTSDGSEAFRNGGEEFSIVLLDCPIEKGNFFAEQVRKETEE 126 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260 I SG + ITIS G++ S +++ AD+ALY AK +GRNR VC +D Sbjct: 127 HDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKSADEALYKAKLTGRNR-VCIAD 181 >gi|316933637|ref|YP_004108619.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315601351|gb|ADU43886.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 457 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N S L + E+ L+++ DID+FK IND++GH GD V Sbjct: 290 EMAITDGLTGLHNRRYMESHLATLAEQASARGKPLALMILDIDFFKSINDSYGHDAGDDV 349 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + ++ R GGEEF + A ++A LR+ I + G Sbjct: 350 LREFALRIKKSIRGIDLACRYGGEEFVIVMPETDLHVAQMVAERLRRAIAGEPFAVEKGT 409 Query: 215 -SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 I +TIS G++ K EPI ++ RAD ALY AK GRNRVV + Sbjct: 410 RRIEVTISIGLSTLERKGEPIPDLLKRADTALYRAKHDGRNRVVAAA 456 >gi|213021826|ref|ZP_03336273.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 141 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 3/134 (2%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF G++ Sbjct: 1 MSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLPGAT 60 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYV 246 + +A +A +R+ I + +I ++ ++ I+ S GI AE + AD+ LY Sbjct: 61 KAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQSLADKRLYY 120 Query: 247 AKKSGRNRVVCFSD 260 AK+SGRNR +C SD Sbjct: 121 AKQSGRNR-ICASD 133 >gi|167615088|ref|ZP_02383723.1| GGDEF domain protein [Burkholderia thailandensis Bt4] gi|257141662|ref|ZP_05589924.1| GGDEF domain-containing protein [Burkholderia thailandensis E264] Length = 487 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 19/188 (10%) Query: 85 ISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132 + G+ L + + R + +L+R D L+GL N AF +L S LS++ Sbjct: 296 VGGTALLSRELRWRRHAELHLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLL 355 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQE 191 F DID FK ND++GH GD V+ + L + V V R GGEEF + Sbjct: 356 FVDIDQFKAYNDHYGHQAGDDVLREVGRCLALNVRRAADDVSRYGGEEFVITLPDIDAKS 415 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVA 247 AA +A +R+ + + I P +T+S G+ H + +T++ AD ALY A Sbjct: 416 AAAIAEHIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHAAHSD--TTLVKMADAALYQA 473 Query: 248 KKSGRNRV 255 K +GRNRV Sbjct: 474 KSTGRNRV 481 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] gi|133738843|emb|CAL61890.1| conserved hypothetical protein, GGDEF domain [Herminiimonas arsenicoxydans] Length = 519 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 14/165 (8%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F ++L L+++ D+D+FK+ ND +GHP GD+ + +S Sbjct: 350 DSLTGLANRRRFDAALDDEFARAMRNQTSLALIMLDVDHFKKYNDRYGHPQGDECLKEIS 409 Query: 160 DQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 L T V R GGEEF G+ AA +A +R I+ + + P + Sbjct: 410 KILKTATARTGDLVARYGGEEFVILLPGTDRAGAAAVAERVRLAIQALNMEHAETPDGIV 469 Query: 219 TISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 T S GIA +R P +++ ADQALY AK+ GRN+ C S Sbjct: 470 TASLGIAALIPQRQQNSP-QQLVHAADQALYKAKEDGRNQ-SCIS 512 >gi|332188402|ref|ZP_08390126.1| diguanylate cyclase domain protein [Sphingomonas sp. S17] gi|332011548|gb|EGI53629.1| diguanylate cyclase domain protein [Sphingomonas sp. S17] Length = 339 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%) Query: 82 LGYISGSILKELFISYNRISQLS-----------------RIDCLSGLLNHSAFISSLGS 124 L ++G +L+ + S R+ Q + R D L+GL N AF S+G Sbjct: 142 LAKLTGEMLERIHDSERRLEQATAEADALREKLVEARASARRDPLTGLANRLAFNESIGQ 201 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 E + D+D FK+IND GH VGD+V+ + Q++ G V R GGEEFA Sbjct: 202 CFQSPESCYLALCDVDRFKRINDEHGHAVGDRVLNAIG-QILSEEGRGHLVCRHGGEEFA 260 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINI-SSGPSI-HITISAGIAERCHKEPISTIIYR 239 + EA L + R + ++ + +G +I +T SAGI + T+ R Sbjct: 261 ILMTKLTMTEARALIDRARDAVREKRLRVRETGEAIGEVTFSAGITAFRPDDTHETVFAR 320 Query: 240 ADQALYVAKKSGRNRV 255 AD LY AK GRNR+ Sbjct: 321 ADALLYRAKNEGRNRI 336 >gi|296161321|ref|ZP_06844129.1| diguanylate cyclase [Burkholderia sp. Ch1-1] gi|295888479|gb|EFG68289.1| diguanylate cyclase [Burkholderia sp. Ch1-1] Length = 607 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 11/178 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145 L + L+ D L+GL N F+ L E L+++F D+D FKQIND Sbjct: 399 LHAKQRELVHLATHDVLTGLPNRVLFMEKLENAIEEAARRQECLAVLFVDLDRFKQINDQ 458 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIE 204 FGH VGDKV+A ++ +L V + V RLGG+EF G QEAA +A+ + + Sbjct: 459 FGHSVGDKVLAAVARRLKQVLCSADVVARLGGDEFIVLIEGPRSQEAAPAIASRIMATL- 517 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261 N ++ I G S+ + S GI++ + ++ AD A+Y AK GR + + D+ Sbjct: 518 NEEVRI-DGQSMTVGASIGISQFPDDSGTAEELLLNADAAMYAAKSGGRCAYLRYHDV 574 >gi|304395221|ref|ZP_07377105.1| diguanylate cyclase [Pantoea sp. aB] gi|304357474|gb|EFM21837.1| diguanylate cyclase [Pantoea sp. aB] Length = 402 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 10/154 (6%) Query: 107 DCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +AF + +L S NE+ +++F D D FK INDN+GH GD+V+ + Sbjct: 250 DPLTGLANRTAFSARLTQLLALQSANERFALLFLDGDRFKSINDNWGHAAGDEVLKAIGS 309 Query: 161 QLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +L+ V RLGG+EFA ++ EQ ++ N I E +I+I+ G I Sbjct: 310 RLLSQASEQDLVARLGGDEFAMLVSSRTRDEQLQQLMQNIHDAISE--EISIAEGLPIKT 367 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 +++ G A + + +I+ RAD +Y K+ + Sbjct: 368 SMTIGYAWSQQGDTVESILERADMNMYKNKRKNK 401 >gi|302341745|ref|YP_003806274.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfarculus baarsii DSM 2075] gi|301638358|gb|ADK83680.1| periplasmic/7TM domain sensor diguanylate cyclase [Desulfarculus baarsii DSM 2075] Length = 576 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS+ D L+GL N F L L ++ D+D FK NDN GHP GD Sbjct: 411 LGRLSQTDGLTGLFNKRHFDQELLAQVRRASESGAPLCLLMLDVDDFKAFNDNHGHPAGD 470 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ L++ + R GGEEFA S ++AA + +R+ + Sbjct: 471 QVLQALAETIRASLRQADAAFRYGGEEFAVLLPDMSAEQAAAVGQRIRQTFACQSFLTAH 530 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G ++ +S G+A E ++++ RAD ALY AK+ G+NR+ Sbjct: 531 G-AVSCGVSLGLACLGQGEDAASLLRRADAALYQAKRQGKNRLA 573 >gi|86358136|ref|YP_470028.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86282238|gb|ABC91301.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 443 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 11/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQIND 144 E ++ + D L+GL N F + NE L S+ DID+FK++ND Sbjct: 261 ETLAQMRQLRAAAACDYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLND 320 Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH +GDKV+ ++++L +F G+ + RLGGEEFA A L +++R I Sbjct: 321 TYGHEIGDKVLKAVANRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDI 380 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ + + +TIS GIAE E + ADQ LY+AK GRN+V +SD Sbjct: 381 SRLKVT-ADDEDLGVTISIGIAEIGGYETFENYLNAADQFLYMAKHRGRNQV--YSD 434 >gi|59712868|ref|YP_205644.1| GGDEF domain-containing protein [Vibrio fischeri ES114] gi|59480969|gb|AAW86756.1| GGDEF domain protein [Vibrio fischeri ES114] Length = 631 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 23/193 (11%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---------EKLSI 131 ++ YI + KEL + LS D LSG N F L + + + Sbjct: 450 IISYIDITKRKEL---EKELRYLSEKDVLSGCWNRRKFEFELENQTLLTQRYYPAHQCCL 506 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID FK+IND GH VGD+VI +SD L FV R+GGEEFA ++ + Sbjct: 507 AILDIDLFKRINDTKGHDVGDQVIRLVSDILNNGSRETDFVARIGGEEFAIIMPHTTLMD 566 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKS 250 A ++ N LR + +S H+TIS G+ + H + + Y+ AD ALY +K + Sbjct: 567 AEMVVNRLR-------VAVSQLEEYHVTISGGLTDLGHSKKDA---YKCADLALYESKTN 616 Query: 251 GRNRVVCFSDIEN 263 GRN+V S +E+ Sbjct: 617 GRNQVSICSSLED 629 >gi|114046737|ref|YP_737287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] gi|113888179|gb|ABI42230.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] Length = 878 Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148 S +++ L+ D L+ L N + L N +L+ VF D+D FK IND+FGH Sbjct: 444 SEAQLAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRLNAQLATVFIDVDLFKHINDSFGH 503 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207 +GD+++ L+ +L + R+GG+EF A G S ++AA N LR++ E Sbjct: 504 SIGDEMLVELAKRLRCRLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQVFEQPF 563 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +S+G + +T S G++ + T++ AD A+Y AK GRN +++ Sbjct: 564 V-VSTGDHLRLTASMGVSIYPNDGSNADTLLRNADAAMYRAKSEGRNNFAFYTE 616 >gi|330890981|gb|EGH23642.1| diguanylate cyclase [Pseudomonas syringae pv. mori str. 301020] Length = 686 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ L +EK S++ D+D+FK+IND +GH GDKV Sbjct: 524 QKALIDPLTGLPNRAAWGERLEQEMSKWQHEKNSLLVCILDLDHFKRINDGYGHLAGDKV 583 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ + F+ R GGEEF + ++LR +E+ + G Sbjct: 584 LKIVANVFRKRLRSDDFLARFGGEEFVMLLPATPPGTGLTQLDELRTAVESCPFHFK-GE 642 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNRV Sbjct: 643 RVTITVSIGVTAFRTAERSDTAIKRADQALYKAKENGRNRV 683 >gi|218778804|ref|YP_002430122.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218760188|gb|ACL02654.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 415 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 9/165 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + LS D L+GL N F +S K+++ DIDYFK++ND GH V Sbjct: 250 QEVKDLSSKDFLTGLYNRRYFFDLGKKIHASALREKTKIAVATVDIDYFKRVNDTHGHDV 309 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI +S+ L V R GGEEF + ++ L +R+ I++S I + Sbjct: 310 GDLVIQSVSNILANACRETDIVSRFGGEEFCILTPNITPADSLKLFERVRQTIQDSVIQV 369 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G I +T S G+ K + +I R+DQ LY AK GRN+V Sbjct: 370 -QGADIRVTASIGVCSTLLK-TLDDMIVRSDQMLYRAKNQGRNKV 412 >gi|148269917|ref|YP_001244377.1| response regulator receiver modulated diguanylate cyclase [Thermotoga petrophila RKU-1] gi|281412202|ref|YP_003346281.1| response regulator receiver modulated diguanylate cyclase [Thermotoga naphthophila RKU-10] gi|147735461|gb|ABQ46801.1| response regulator receiver modulated diguanylate cyclase [Thermotoga petrophila RKU-1] gi|281373305|gb|ADA66867.1| response regulator receiver modulated diguanylate cyclase [Thermotoga naphthophila RKU-10] Length = 450 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%) Query: 104 SRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 S D L+GL N A F+ + + +++ DID FK+IND FGHPVGD+V+ +++ Sbjct: 295 SETDGLTGLFNKRAIMRFLEEVLRSGKNIAVAMMDIDDFKKINDTFGHPVGDEVLRAVAN 354 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHIT 219 L + VGR GGEEF + E++A + N + + I N G +T Sbjct: 355 ILRETVKSGK-VGRYGGEEF-MVVFETGERDAVVKTMNSIMENIRNFDWQKIFGSEKKVT 412 Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+A + P+ +I AD+ LY AK+SG++R V Sbjct: 413 LSGGVAFSKKESSPVE-LIEEADKKLYTAKRSGKDRYV 449 >gi|170724556|ref|YP_001758582.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169809903|gb|ACA84487.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 398 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 20/168 (11%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL + A + + S K ++ DID+FK+ ND +GH VGD+V+ ++ ++ V Sbjct: 230 DELTGLASRRALYNLVLSLGRKYTVAMLDIDHFKKFNDTYGHDVGDQVLKLVASKIAEVT 289 Query: 167 GTPMFVGRLGGEEFA---------------AAALGSSEQEAAILANDLRKIIENSQINIS 211 G R GGEEF E+ +L ++ RK ++ N + Sbjct: 290 GGGK-AFRYGGEEFTIVFSRKDLSSVLPHLEKVRKEIEKYDIVLRDEKRKKQTKAKRNKA 348 Query: 212 ----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S +++TIS G+A+ H+E + AD+ALY AKK GRN++ Sbjct: 349 QERNSKRVVNVTISIGVADHQHRESFEQTMKEADKALYRAKKKGRNQL 396 >gi|163851915|ref|YP_001639958.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163663520|gb|ABY30887.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 474 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 10/186 (5%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSI 131 ++LL + G L+ +++L++ D L+GL N + F + G+ L++ Sbjct: 286 TVLLSLLFGRELRRSAAMQAELARLAQTDVLTGLPNRRHFETVFAQAWGTSRRTGAPLAL 345 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQ 190 + D D+FK+ ND +GH VGD V+ L+D L P V R+GGEEFA G+ Sbjct: 346 ILIDADHFKRYNDRYGHAVGDAVLRGLADSLSASVRRPGDLVARVGGEEFAVLLPGTDHD 405 Query: 191 EAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 A ++ + + I + ++ GP +T+S G+A + + RAD ALY AK Sbjct: 406 GAMRVSETIHQAIAGFAMPSVGIGPGT-VTVSLGLAVDSGGGTVEDLYRRADAALYEAKA 464 Query: 250 SGRNRV 255 GRN+ Sbjct: 465 GGRNQT 470 >gi|119486060|ref|ZP_01620122.1| hypothetical protein L8106_06050 [Lyngbya sp. PCC 8106] gi|119456835|gb|EAW37963.1| hypothetical protein L8106_06050 [Lyngbya sp. PCC 8106] Length = 569 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 21/175 (12%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + LS D L+GL N F LG N LS++ DIDYFK ND +GHP GD Sbjct: 388 LKSLSETDELTGLANRRWFNNMIEQEWQRLGHQNNSLSLLLVDIDYFKVYNDLYGHPAGD 447 Query: 153 KVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + ++ L V + V R GGEEFA S+ Q +A ++K I+ QI + Sbjct: 448 VCLQKIAQALTECVNRSTDLVSRYGGEEFAILLPMSNNQGGVQVAQRIQKQIKALQITVK 507 Query: 212 SG-----PSIHITISAGIAERCHKEPISTIIYR-----ADQALYVAKKSGRNRVV 256 + P +T+S G+A P S +R AD++LY +K++GRNR+ Sbjct: 508 NSQIICFPEDVVTVSIGVASII---PSSDFNWRDLVEAADRSLYESKRTGRNRIT 559 >gi|116333211|ref|YP_794738.1| Signal transduction diguanylate cyclase [Lactobacillus brevis ATCC 367] gi|116098558|gb|ABJ63707.1| Signal transduction diguanylate cyclase [Lactobacillus brevis ATCC 367] Length = 326 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 91/169 (53%), Gaps = 12/169 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R++ + D L+ + N+ AF + + ++ L+++ FDID+FKQ+ND +GH G Sbjct: 157 RLTYTTNFDELTHVNNYFAFKNDFEEQFAHSRTTDQPLTLMLFDIDHFKQVNDTYGHLAG 216 Query: 152 DKVIAFLSDQLVVVFG---TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 D V++ + + G + + R GGEEF G + ++AA L + + + + + Sbjct: 217 DYVLSHTAQLVTKQLGELDDTLHLYRTGGEEFTILFTGYTTEQAAPLVHSIAQRVREAHF 276 Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G I I+ISAG+ + + I +RAD+ LY +K++GR+RV Sbjct: 277 S-HDGHQISISISAGVTQLHTDDDQRVDIFHRADRNLYHSKQTGRDRVT 324 >gi|120554700|ref|YP_959051.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120324549|gb|ABM18864.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 629 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 8/177 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 + ++EL + +++ +S D L+GL N + L LS+ D D+FK Sbjct: 436 NTMRELEQANRKLASISLNDALTGLYNRRHMDNLLPELCREARRTGNPLSLALIDADHFK 495 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199 +IND +GH GD+ + ++ L P V R GGEEFA G+ A L + Sbjct: 496 RINDTWGHDFGDQCLKQIAGILDEHVKRPRDVAIRFGGEEFALLLPGTDLDGARTLCLAI 555 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 K + + + + H+T+SAGIAE + S + +AD+ALY AK +GR+++V Sbjct: 556 LKAMRKTPLIAPGNETFHLTLSAGIAELATGQEPSDLFRKADEALYQAKGAGRDQIV 612 >gi|264676521|ref|YP_003276427.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262207033|gb|ACY31131.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 473 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 6/134 (4%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + +I+ D+D+FKQIND+FGH GD+++ S L V VGR+GGEEFA A Sbjct: 337 GQPFAILMLDLDHFKQINDSFGHAGGDQLLRSFSQTLSQVLRAQDIVGRMGGEEFAVALP 396 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE----RCHKEPISTIIYRAD 241 A +A + + I ++ ++ ++ T+S G+ + H+ + ++ +AD Sbjct: 397 KVDASAAQEIAKRINRAIRELRVPMNDK-TMSATVSIGLVHTTSLQAHQS-LDMLLLQAD 454 Query: 242 QALYVAKKSGRNRV 255 QALY AK +GRNRV Sbjct: 455 QALYEAKAAGRNRV 468 >gi|229019255|ref|ZP_04176083.1| Sensory box/GGDEF family protein [Bacillus cereus AH1273] gi|229025500|ref|ZP_04181910.1| Sensory box/GGDEF family protein [Bacillus cereus AH1272] gi|228735782|gb|EEL86367.1| Sensory box/GGDEF family protein [Bacillus cereus AH1272] gi|228742038|gb|EEL92210.1| Sensory box/GGDEF family protein [Bacillus cereus AH1273] Length = 430 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 84/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + +EK++++ FDID FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILETEWENVIRNDEKIALILFDIDNFKSVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L+D + R GGEEF + E+EA +A LR IE Q Sbjct: 321 FGDLALVQLADLMKSKVEHQHIFARWGGEEFIILVTDTVEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --SGIS-KLTASFGVALYEQGITKEELMQRADIALYEAKKNGKNQVCIY 425 >gi|311280752|ref|YP_003942983.1| diguanylate cyclase [Enterobacter cloacae SCF1] gi|308749947|gb|ADO49699.1| diguanylate cyclase [Enterobacter cloacae SCF1] Length = 565 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 83/175 (47%), Gaps = 7/175 (4%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFK 140 G L+E + + S D L+ L N AF + + ++ S ++ D+D FK Sbjct: 388 GDKLQEQTRLSRTLKRQSEEDPLTHLYNRRAFDARATALLQQASHHFPAWLIMLDVDRFK 447 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GHP GD+V+ L+ L +GRLGGEEFA + A ++ Sbjct: 448 SINDTWGHPTGDEVLVGLATTLKTFSRPGDVIGRLGGEEFAVMFRAQGHESVAGYTQRIQ 507 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I +G IT S G++ + P+S ++ AD ALY AK SGR+R+ Sbjct: 508 AEIRKLAFQGPNGEPFQITASFGVSVGWQR-PLSELMSEADAALYEAKNSGRDRI 561 >gi|297569300|ref|YP_003690644.1| response regulator receiver modulated diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] gi|296925215|gb|ADH86025.1| response regulator receiver modulated diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] Length = 337 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R+++LS D L+GL N F ++ + L++V DID FKQ NDNFGH VG Sbjct: 159 RLNELSLTDALTGLANRRCFQETIHTEWRRAMRNRHPLTLVLGDIDSFKQFNDNFGHLVG 218 Query: 152 DKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 D+ + ++ V +P+ R GGEEF + + LA +R+ +E Sbjct: 219 DECLV----RIAAVIRSPLMRPSDLAARFGGEEFVILLPETDLEGGRHLAETVRQEVEKM 274 Query: 207 QI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 + + SG + +T+S G++ + S +I AD+ALYVAK+ GRNRV Sbjct: 275 SVEHPESGTRLQLTMSFGVSSVVPQPEFSEQDLICAADKALYVAKEGGRNRV 326 >gi|146308555|ref|YP_001189020.1| diguanylate cyclase [Pseudomonas mendocina ymp] gi|145576756|gb|ABP86288.1| diguanylate cyclase [Pseudomonas mendocina ymp] Length = 365 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 95/200 (47%), Gaps = 21/200 (10%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------IS 120 +L ++ S + LL ++ K +F+ +R++ + +D L+GL N S I+ Sbjct: 172 HLIWILASFSFGLLSAFLLERAHKRMFLHQDRLALSASLDGLTGLWNRSRMERFLVEEIA 231 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLG 176 Y S+V DID+FK +ND GH VGD V+ L D + V+ VGRLG Sbjct: 232 RANRYGTPFSVVLIDIDHFKSVNDTHGHAVGDSVLRQFATLLRDSVRVLDK----VGRLG 287 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPIST 235 GEEF E +IN + + T S GIAE E + + Sbjct: 288 GEEFLIVL-----PENDAAQAKQAVQALQQRINGFAFDRVQRKTASFGIAEYRPGESLDS 342 Query: 236 IIYRADQALYVAKKSGRNRV 255 ++ RADQA+Y AK SGR+R+ Sbjct: 343 LLERADQAMYRAKASGRDRI 362 >gi|104783790|ref|YP_610288.1| diguanylate cyclase [Pseudomonas entomophila L48] gi|95112777|emb|CAK17505.1| putative diguanylate cyclase (GGDEF domain)/response regulator [Pseudomonas entomophila L48] Length = 538 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + LS DID+FK+IND GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARREEQPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 L ++GR GGEEFA ++ + A + +++R+ ++I+ + P + Sbjct: 439 LFLKQRLRKTDYIGRYGGEEFAIVMPNTALEAAHKVLDEIRRRF--AEIHYPAQPHDLQC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T SAG+ + T+ AD+ALY AK +GRN VV Sbjct: 497 TFSAGVVQLDDNLDALTMASAADEALYRAKHAGRNCVV 534 >gi|320335163|ref|YP_004171874.1| diguanylate cyclase and metal dependent phosphohydrolase [Deinococcus maricopensis DSM 21211] gi|319756452|gb|ADV68209.1| diguanylate cyclase and metal dependent phosphohydrolase [Deinococcus maricopensis DSM 21211] Length = 899 Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 + D L+GL N F + L + ++ D D+FK++ND FGH VGD+V+ ++ L+ Sbjct: 196 AHTDALTGLNNRRLFTAHLEALRPGDHLILVDADHFKRVNDVFGHDVGDEVLQGIAQALI 255 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 RLGGEEFA G S +A +A ++ +G ++ +T S G Sbjct: 256 TSAPPGTRAYRLGGEEFALIVPGRSGAQALKVAQACWAAARTPRVQ--AGQTLRVTCSVG 313 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +A+ E + RAD ALY AK +GR++VV Sbjct: 314 VADVLPGEAPAATYKRADAALYAAKTAGRDQVV 346 >gi|297545361|ref|YP_003677663.1| GAF sensor-containing diguanylate cyclase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843136|gb|ADH61652.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 554 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 10/172 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +++ S D L+ N F +L +E +S++ FD+D FK IND +GH Sbjct: 383 YYEVTKKSITDPLTKTYNRRYFNDALMENIMRADENSEPVSLIMFDLDNFKLINDTYGHL 442 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD+V+ ++ ++ + V R GGEEFA + ++A +A +R + + + Sbjct: 443 IGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYTIAERIRSEVSSKPVK 502 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259 G IHITI+ G+A+ K + +I AD+ALY KS GRN++ + Sbjct: 503 TEKG-DIHITITGGVADYPRKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553 >gi|221369518|ref|YP_002520614.1| Diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides KD131] gi|221162570|gb|ACM03541.1| Diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides KD131] Length = 326 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 9/163 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q++ D L+G + +++++ + +IV FD+D+FK IND GH VGD Sbjct: 161 LRQIALSDALTGAMTRRGWLAAVEKEMARGARQGTQAAIVLFDVDHFKTINDTHGHAVGD 220 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+ + ++ G +GR+GGEEFA + EA LA LR+ ++ I + + Sbjct: 221 AVLQALTRRCLLHLGPADALGRIGGEEFAVLVPDAGLPEAMELAERLRRSFSDAPIEV-A 279 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254 G ++ +T S G+ + + AD+ LY AK +GRNR Sbjct: 280 GQALRVTASFGVQGLDADTGNAGSWLAAADRRLYEAKAAGRNR 322 >gi|172087714|ref|YP_204898.2| GGDEF domain-containing protein [Vibrio fischeri ES114] gi|171902306|gb|AAW86010.2| GGDEF domain protein [Vibrio fischeri ES114] Length = 482 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 12/191 (6%) Query: 76 ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125 +TIS+L+ ++ + ++ L I + ++ D L+GLLN A + Y Sbjct: 291 LTISMLIAALTSVVTRDKQRIENLLEIRTKELRYMAMHDDLTGLLNRRAIRDVITRYIEA 350 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + +++ FDID FKQIND +GHP GD+V+ + + G + V RLGG+EF+ Sbjct: 351 EKPFALLCFDIDKFKQINDTYGHPEGDEVLRHIGHLMSETLGNNVHVSRLGGDEFSIVLK 410 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 ++ E +++ + ++ S + + I TIS G A E + ++ ADQALY Sbjct: 411 LNNIDELTLISEQIHDLVATSP-TVFNDFEIAQTISLG-AVLWQGETLEELLKAADQALY 468 Query: 246 VAKKSGRNRVV 256 +K GRN+V Sbjct: 469 QSKTMGRNQVT 479 >gi|167576912|ref|ZP_02369786.1| GGDEF domain protein [Burkholderia thailandensis TXDOH] Length = 487 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 19/188 (10%) Query: 85 ISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132 + G+ L + + R + +L+R D L+GL N AF +L S LS++ Sbjct: 296 VGGTALLSRELRWRRHAELHLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLL 355 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQE 191 F DID FK ND++GH GD V+ + L + V V R GGEEF + Sbjct: 356 FVDIDQFKAYNDHYGHQAGDDVLREVGRCLALNVRRAADDVSRYGGEEFVITLPDIDAKS 415 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVA 247 AA +A +R+ + + I P +T+S G+ H + +T++ AD ALY A Sbjct: 416 AAAIAEHIRRAVYDLDIEHVRSPYARVTVSIGLVTSHEHAAHSD--TTLVKMADAALYQA 473 Query: 248 KKSGRNRV 255 K +GRNRV Sbjct: 474 KSTGRNRV 481 >gi|115372346|ref|ZP_01459655.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1] gi|115370559|gb|EAU69485.1| ggdef family protein [Stigmatella aurantiaca DW4/3-1] Length = 237 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 81/159 (50%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F+ L Y+ LS++ FDID+FK+IND GH GD V+ L+ Sbjct: 80 DGLTGVSNKRYFLEYLEREMGRSHRYHRALSLMIFDIDHFKKINDVHGHLAGDHVLRELA 139 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + R GGEEFA ++A + A +RK+IE I +T Sbjct: 140 QSVKRLVRREQCFARYGGEEFALVMPEDGPEKARLFAEKIRKLIEERTFMFED-KEIPVT 198 Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256 IS G+A+ EP + I +D LY AKK+GRNRVV Sbjct: 199 ISIGVADMTADMTEP-TQFIKVSDANLYRAKKAGRNRVV 236 >gi|74318230|ref|YP_315970.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259] gi|74057725|gb|AAZ98165.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus denitrificans ATCC 25259] Length = 501 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFIS----SLG--SYNEKLSIVFFDIDYFKQINDN 145 +L ++ LS D L+GL N AF + +LG ++++V DIDYFK+IND+ Sbjct: 320 QLQAQREQLEHLSLTDPLTGLPNRRAFETRFPQALGFAGRGLRIALVLLDIDYFKRINDS 379 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH VGD+V+ L+ L + RL G+EF + ++ + A +A R++ ++ Sbjct: 380 FGHGVGDQVLLALAQTLKALTRRADLPARLAGDEF---VILLADLDTAGVALWYRRLADH 436 Query: 206 SQINISS-GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +++ G I ISAG R ++ ++ + RAD+ALY AK SGRN++V + ++ Sbjct: 437 FRSELAALGLDIQTGISAGQTWLRRTSRDTMNDALGRADRALYQAKASGRNQIVIDAPLD 496 Query: 263 NNTC 266 Sbjct: 497 ETGA 500 >gi|26988822|ref|NP_744247.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida KT2440] gi|24983624|gb|AAN67711.1|AE016402_3 sensory box protein [Pseudomonas putida KT2440] Length = 800 Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 11/160 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G+ N F L E+ L+++ DID+FK+IND FGH VGD+V+ Sbjct: 640 LSVTDSLTGIHNRRYFQERLKIELERAQRDGLPLAVIMLDIDHFKRINDRFGHAVGDRVL 699 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L ++ RLGGEEF GS +A +LA +L + + N + Sbjct: 700 RSLCQRIAQRLRRTDVFCRLGGEEFMVLCPGSDANQARLLALELWQGVRNVPVEGVG--- 756 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G+A E ++ RAD +Y AK++GR+RV Sbjct: 757 -QVTASFGVAGWRSGEGADALLLRADAGVYAAKQAGRDRV 795 >gi|323489040|ref|ZP_08094276.1| diguanylate cyclase with PAS/PAC sensor [Planococcus donghaensis MPA1U2] gi|323397265|gb|EGA90075.1| diguanylate cyclase with PAS/PAC sensor [Planococcus donghaensis MPA1U2] Length = 197 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 13/184 (7%) Query: 85 ISGSILKELFISYNRISQL-----SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132 + G +++ + I+ ++++L + D L+ L N F + S N +S++ Sbjct: 13 VEGVVIRHVDITQQKLTELQLKEHAEKDSLTSLFNRRYFQEQLKKEVRSAHQKNTPISLL 72 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 + D D FK+IND +GHP GD+V+ L+ Q+ R+GG+EFA +++ + Sbjct: 73 YIDTDNFKEINDTYGHPTGDQVLKQLAMQITKFTRPSDTTARIGGDEFAVILPNTNKADL 132 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 ++A L + I+N I I +T+S G + ++ +I D ALY AK G+ Sbjct: 133 ELIATRLSQEIQNLNIQ-EQNRQIDVTVSIGGKSFTNNSSLNCMIEWVDDALYAAKDKGK 191 Query: 253 NRVV 256 N+VV Sbjct: 192 NQVV 195 >gi|289579196|ref|YP_003477823.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter italicus Ab9] gi|289528909|gb|ADD03261.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter italicus Ab9] Length = 554 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 10/172 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +++ S D L+ N F +L +E +S++ FD+D FK IND +GH Sbjct: 383 YYEVTKKSITDPLTKTYNRRYFNDALMENIMRADENSEPVSLIMFDLDNFKLINDTYGHL 442 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD+V+ ++ ++ + V R GGEEFA + ++A +A +R + + + Sbjct: 443 IGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYTIAERIRSEVSSKPVK 502 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259 G IHITI+ G+A+ K + +I AD+ALY KS GRN++ + Sbjct: 503 TEKG-DIHITITGGVADYPRKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553 >gi|218463678|ref|ZP_03503769.1| two-component response regulator protein [Rhizobium etli Kim 5] Length = 415 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 11/162 (6%) Query: 107 DCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F + NE L S+ DID+FK++ND +GH +GDKV+ ++ Sbjct: 248 DYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLNDTYGHEIGDKVLKAVA 307 Query: 160 DQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++L +F G+ + RLGGEEFA A L +++R I ++ + + + Sbjct: 308 NRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDISRLKVT-ADDEDLGV 366 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 TIS GIAE E + ADQ LY+AK GRN+V +SD Sbjct: 367 TISIGIAEIGGYETFENYLNAADQFLYMAKHRGRNQV--YSD 406 >gi|190892205|ref|YP_001978747.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190697484|gb|ACE91569.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] Length = 443 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 11/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKL------SIVFFDIDYFKQIND 144 E ++ + D L+GL N F + NE L S+ DID+FK++ND Sbjct: 261 ETLAQMRQLRAAAACDYLTGLYNRRYFYDNGPKLVNECLRLKVPSSVAILDIDHFKRLND 320 Query: 145 NFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH +GDKV+ ++++L +F G+ + RLGGEEFA A L +++R I Sbjct: 321 TYGHEIGDKVLKAVANRLFTIFEGSDNLLSRLGGEEFAILFPQMDSAAATKLCDEIRSDI 380 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ + + +TIS GIAE E + ADQ LY+AK GRN+V +SD Sbjct: 381 SRLKVT-ADDEELGVTISIGIAEIGGYETFENYLNAADQFLYMAKHRGRNQV--YSD 434 >gi|170728486|ref|YP_001762512.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169813833|gb|ACA88417.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 366 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 119/254 (46%), Gaps = 31/254 (12%) Query: 25 HTFMIYFSIFFSIFI-------ATVIFIANIFLFYI-------GLTPFYGLEYILVENLS 70 H + + F+I + F + ++FI N+ L++ L Y L+ + L Sbjct: 113 HYYFLLFAIIPAAFFEISQWRSSAILFITNLSLYFFFQLNGWEALPEIYELQAQQLNLLR 172 Query: 71 LVIIS---ITISLLLGYISGSILKELFISYNRI--SQLSRIDCLSGLLNHSAFISSL--- 122 ++++ TI LLL ++ E + N I +L+ D L+ L N FI ++ Sbjct: 173 VIMVGSSVFTIILLL------LISERYSERNEIFLEKLANTDPLTSLNNRRHFIDNVQQQ 226 Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ L++ DID+FKQIND GH GD+ + +S L G + R+GGEEF Sbjct: 227 LAKKLDQNLALAIIDIDHFKQINDTGGHDAGDEALKHISQILSKHVGEKELLARIGGEEF 286 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 A + S+ + A + L + EN+ IT S G+ ++ + ++ A Sbjct: 287 AILYIESTAELATKKGDALLRQFENTPFYYFE-KEYKITASIGLCLFTGQQDLDQVMREA 345 Query: 241 DQALYVAKKSGRNR 254 D+ALY AK+ GRNR Sbjct: 346 DEALYQAKEGGRNR 359 >gi|186470385|ref|YP_001861703.1| diguanylate cyclase [Burkholderia phymatum STM815] gi|184196694|gb|ACC74657.1| diguanylate cyclase [Burkholderia phymatum STM815] Length = 241 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 4/167 (2%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGH 148 +E+ +++ + D L+G+ N SA I ++ ++ DID FK++ND+FGH Sbjct: 72 REMQALAQQLAHRATHDALTGVFNRSAVIERTTKVLRHDSAVMIILDIDEFKRVNDDFGH 131 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 P GD VI + + L + G F+GR+GGEEF EA A +R+ I + Sbjct: 132 PAGDAVIMGIVECLRRIVGERGFIGRVGGEEFTVLLPAHEPAEALRQAEKMREAI--GRH 189 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S +T S G++ T AD ALY AK+ GRNRV Sbjct: 190 VFASPVDRRVTASFGVSANPPGTDFDTAYGFADAALYRAKRGGRNRV 236 >gi|326387022|ref|ZP_08208632.1| two component response regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208203|gb|EGD59010.1| two component response regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 440 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 15/187 (8%) Query: 84 YISGSILKELFISYNRISQLSRI------DCLSGLLNHSAF-------ISSLGSYNEKLS 130 YI+ +L + + + I Q+ R+ D L+GL N AF + L + N S Sbjct: 247 YIAEEVLCRVENNIDTIKQMKRLRHLAERDPLTGLYNRRAFFERAYKILDGLKAGNAPGS 306 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSE 189 + DID+FK +ND +GH GD + +++ L+ F+ RLGGEEF Sbjct: 307 LAILDIDHFKTVNDTYGHDCGDVALNAVANVLLTTAQERGFLTARLGGEEFVMMFHHRDS 366 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 + L D+R+ IE + P I +T S G++ +E + ++ ADQ LY+AK Sbjct: 367 TQVFALCEDIRQAIEACDVRSEEAP-IALTASIGVSVIHLEEGMDNLLNAADQMLYLAKL 425 Query: 250 SGRNRVV 256 GRNRV+ Sbjct: 426 QGRNRVI 432 >gi|323204003|gb|EFZ89020.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 365 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL++I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 169 TLSLLVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 227 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 228 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 287 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 288 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 338 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 339 YREWLKSADMALYKAKNAGRNRT 361 >gi|293394471|ref|ZP_06638767.1| ornithine decarboxylase [Serratia odorifera DSM 4582] gi|291422936|gb|EFE96169.1| ornithine decarboxylase [Serratia odorifera DSM 4582] Length = 403 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 26/252 (10%) Query: 24 PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-LSLV-IISITISLL 81 P T + FS +++ ++ +FLF + + E I++ SLV + S + L+ Sbjct: 149 PLTVALMFSSLIPFYLSPML----LFLFSVPILSMVIGENIVIRGAFSLVNLASYALILI 204 Query: 82 LGYISGSILKELFISY-----------NRISQLSRIDCLSGLLNHSAF-------ISSLG 123 L Y + +L++ F+ R+S+L+ D L+GL N F + Sbjct: 205 LIYSAKRMLEKWFMLAMERERENQRLIERLSKLAHRDPLTGLSNRRYFNAYFDSVFARES 264 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ-LVVVFGTPMFVGRLGGEEFAA 182 S E S++ D+DYFK+ ND++GH GD+ + L++ L V + V R GGEEF Sbjct: 265 SGVEHFSVILIDVDYFKKYNDHYGHQAGDECLVRLAECFLRCVRRSQDLVARYGGEEFII 324 Query: 183 AALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 S +EA +A ++ + QI + SG S +++S GIA+ +I AD Sbjct: 325 LLPKSDRREAMAVAERIKTQVAALQIPHAQSGVSPWVSVSQGIAQWRPGVDKERLIASAD 384 Query: 242 QALYVAKKSGRN 253 +ALY AK GR+ Sbjct: 385 RALYQAKSQGRS 396 >gi|26989136|ref|NP_744561.1| diguanylate cyclase [Pseudomonas putida KT2440] gi|24983971|gb|AAN68025.1|AE016435_2 GGDEF family protein [Pseudomonas putida KT2440] Length = 544 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 14/175 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144 ++L+E NR +Q D L+GL N + +S L + + + + DID+FK+IND Sbjct: 376 NLLQERIGRLNRDAQ---TDPLTGLGNRRSLEISLSLLEAEKREFAAIALDIDHFKRIND 432 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH VGD+V+ L++ + + R GGEEF G++ AA +A LR ++ Sbjct: 433 SHGHDVGDQVLRQLAELMRRCCREGDLLCRTGGEEFLILLPGATLNVAAAVAERLRVTVQ 492 Query: 205 NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + S G +TIS G+ H EP+S + AD+ALY AK+ GRNRV Sbjct: 493 EMPVE-SVGA---VTISLGVTHWDGETHGEPMSA-LGEADRALYRAKQEGRNRVA 542 >gi|330953521|gb|EGH53781.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7] Length = 308 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + + LS++ DID+FK++ND +GH GD V+ ++ L V R GGEEF Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + + A ++ L + + N + S P++ +T+S G + E +++ RAD AL Sbjct: 235 SNTGAESAELIGQRLCQAVRNLEFRELS-PALTMTVSLGCSTLLPTETADSLLRRADNAL 293 Query: 245 YVAKKSGRNRVVCFS 259 YVAK+ GRNR+ S Sbjct: 294 YVAKREGRNRIAMAS 308 >gi|311279563|ref|YP_003941794.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae SCF1] gi|308748758|gb|ADO48510.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae SCF1] Length = 720 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 106/203 (52%), Gaps = 12/203 (5%) Query: 73 IISITISLLLGYI--SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 I+++ L+L +I S L +L + +++ D LS L N A I L Sbjct: 267 IVALAAGLILFFIVLSSLGLYKLARGEKQAREIALTDWLSHLPNRRALIEQLERVRKHGD 326 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 +E ++VF D+D FK +ND +GH VGD +I ++ L + + R+GG+EFA Sbjct: 327 DELKTVVFIDLDGFKDVNDIYGHDVGDALIVHIAHTLHALVPDDGMLARMGGDEFAMTLG 386 Query: 186 GS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQA 243 G+ SEQ AA A + + NS + I G +IHI+ S GIA +E S + RAD A Sbjct: 387 GALSEQHAAAFAGSVLDFL-NSPLRI-RGRTIHISASIGIASGILRECTTSELFRRADIA 444 Query: 244 LYVAKKSGRNRVVCFSDIENNTC 266 +Y +K +G+ R+ + D E N+ Sbjct: 445 MYHSKITGKGRITHY-DAELNSA 466 >gi|260887989|ref|ZP_05899252.1| GGDEF domain protein [Selenomonas sputigena ATCC 35185] gi|330838531|ref|YP_004413111.1| diguanylate cyclase [Selenomonas sputigena ATCC 35185] gi|260862240|gb|EEX76740.1| GGDEF domain protein [Selenomonas sputigena ATCC 35185] gi|329746295|gb|AEB99651.1| diguanylate cyclase [Selenomonas sputigena ATCC 35185] Length = 648 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 14/219 (6%) Query: 44 FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQL 103 F ++F + +TPF L +++ V+ +I + + S ++ K L + Sbjct: 387 FQYHLFAWDTYITPFALLSFVV-----FVLSTIRMRIRDEVRSEAVQKSLENEIVEAKEK 441 Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ID L+ N F + + + L+ + DID+FK++ND++GH GD V++ Sbjct: 442 AQIDPLTRCFNRYKFNDTFPEWVKVAQNTDGHLAFMILDIDFFKRVNDDYGHDEGDHVLS 501 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + L + R GGEEF L S +EA I AN LR+ I +Q I + I Sbjct: 502 SFAGILHTSLDRRHLLVRWGGEEFVILCLHYSLKEAEIFANHLRERI--AQAPICNYRPI 559 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +I K+ + ++ RAD ALY AK+ GRN V Sbjct: 560 QCSIGVSRWHGVQKDTVEALLKRADDALYRAKQEGRNCV 598 >gi|115377475|ref|ZP_01464677.1| ggdef domain protein [Stigmatella aurantiaca DW4/3-1] gi|115365519|gb|EAU64552.1| ggdef domain protein [Stigmatella aurantiaca DW4/3-1] Length = 312 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 11/171 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QLS +D L+ L NH F L Y++ L ++ D+D+FK+IND GHPVGD Sbjct: 127 LQQLSVLDGLTQLHNHRYFQERLREEFRCAQRYDDALCLILLDLDFFKEINDRHGHPVGD 186 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L V R GGEEFA + A +A + K + + Sbjct: 187 TVLCEVARILQQSVRETDIVARYGGEEFAVLLPRTHLAGAITVAERVWKGVAGQPMGADG 246 Query: 213 GPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDI 261 ++ IT S G++ H+ ++ ++ AD+ALY AK+ GRNRV S I Sbjct: 247 --ALRITASLGVSGFPHRTVLTPEQLLLTADEALYRAKREGRNRVCLHSPI 295 >gi|89092170|ref|ZP_01165125.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL domains [Oceanospirillum sp. MED92] gi|89083905|gb|EAR63122.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL domains [Oceanospirillum sp. MED92] Length = 731 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 103/200 (51%), Gaps = 14/200 (7%) Query: 73 IISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----- 124 +++ +SL G Y+ + +E + + + D L+GL N F L S Sbjct: 272 LVAFLVSLATGMAAYLIATNYREKLQAIETATYRANYDVLTGLSNRYHFSQQLQSLIYEH 331 Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + ++ F D+DYFK++NDN+GHP GD+++ + ++V + + + RL G+EF Sbjct: 332 QRHGHMFALFFIDLDYFKEVNDNWGHPAGDELLRLFAHRMVSIVRSDDLIARLAGDEFVI 391 Query: 183 AALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240 S +A +LA L+ +E + + +G + +T S GIA + ++ A Sbjct: 392 VLKDLESATQAELLAEKLQ--LELGEPYLINGQYLSVTHSLGIAMYPADGGSMELLLQNA 449 Query: 241 DQALYVAKKSGRNRVVCFSD 260 D+A+Y AK++G+NR+ F+D Sbjct: 450 DRAMYEAKRAGKNRIFFFND 469 >gi|313681790|ref|YP_004059528.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313154650|gb|ADR33328.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 312 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 8/160 (5%) Query: 107 DCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N F + S +++LS+V DID FK +ND +G+ GDKV+ F++ Sbjct: 153 DPLTKVGNRQGFSEDIESSIEAGASKQLSMVLMMMDIDNFKFLNDEYGYVAGDKVLYFIA 212 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + + V R GGEEFA +A +A+ +R IE S++ I SG ++H+T Sbjct: 213 QTIKGMIRSGDKVYRFGGEEFAVVLNRCDVAQAQAIADKIRLKIEKSRL-IYSGKNVHVT 271 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S G+ + + +I RAD+ALY AKKS +N V F Sbjct: 272 VSVGVTVHQAGDTLDDLIGRADKALYCAKKSNKNCTVLFD 311 >gi|293605461|ref|ZP_06687843.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292816189|gb|EFF75288.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 404 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 7/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-SYNEK----LSIVFFDIDYFKQINDNFGHPVGD 152 + + ++ D ++ LLN + +L S+N + ++ D+D+FK+IND +GH GD Sbjct: 217 DSLRNMAARDPMTDLLNRRGLLEALTQSFNARNAGPARLLLLDVDHFKRINDTYGHQAGD 276 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 +VI ++D L GR+GGEEF A L + LA LR +E IN++ Sbjct: 277 EVICQVADILRSTVRRGDLTGRIGGEEFVAVFLDADGDRVIHLAERLRASVEGHVINVAG 336 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 S ++ T++ GI+ H + + AD ALY K +GR R+ Sbjct: 337 SAGALRCTVTIGISPPFHGVHDLEEALRHADAALYRGKAAGRYRI 381 >gi|227326717|ref|ZP_03830741.1| putative signaling membrane protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 353 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 90/185 (48%), Gaps = 12/185 (6%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 + LGY++ + +L + ++S D ++ L N + S Y ++ Sbjct: 168 PIFLGYVTYTTALKLAEHKRMLMEVSIHDGMTSLYNRHHWERLLKHEYDSCQRYKRTATL 227 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 V FDID+FK NDNFGH VGD+ I L+ +L F +GR GG+EFA +S E Sbjct: 228 VLFDIDHFKAFNDNFGHNVGDQAILLLARELTSGFRETDVIGRFGGDEFAVILPQTSAGE 287 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKK 249 A N +R+ + +N + P + + +S GIAE E I + AD ALY AK Sbjct: 288 ALDAVNRIRESLSLKFLNQT--PQLAVFVSVGIAE-ISPEMGQYIDWLKTADMALYRAKN 344 Query: 250 SGRNR 254 GR R Sbjct: 345 KGRRR 349 >gi|118590829|ref|ZP_01548229.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM 12614] gi|118436351|gb|EAV42992.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM 12614] Length = 387 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 119/245 (48%), Gaps = 16/245 (6%) Query: 26 TFMIYFSIFFSIFIATV-IFIANIFLFYIG-LTPFYGLEYILVENLSL---VIISITISL 80 T IY S F I+++ + +A +FL G L +GL + + VI+ I + Sbjct: 132 TITIYASKPFRGLISSIGLILAFVFLAAEGTLRTVHGLVSGAPQGPGMIDDVIVDIHLMC 191 Query: 81 LLGYISGSILKELFISY----NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSI 131 L +IS + L +S+ NR + +R D L+G N F + L + + + Sbjct: 192 ALVFISLTGAFSLALSFELAANRNREDARRDPLTGAFNRREFQARLENLLKETPKDDFGL 251 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 V FD+D+FKQ+ND FGH GD+ + + ++ RLGGEEFA S + Sbjct: 252 VHFDLDHFKQVNDRFGHVAGDEALVRVCSEVKAHLRQNDCFARLGGEEFAVLLPSISREN 311 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250 A +A LR+ I + + ++T SAG+ K P + ++ DQ+LY +K++ Sbjct: 312 AYRVAERLRERIAGLRFEFAPR-EFNLTASAGVYHGNGSKLPSNELLKTVDQSLYQSKRT 370 Query: 251 GRNRV 255 GRNRV Sbjct: 371 GRNRV 375 >gi|51246372|ref|YP_066256.1| sensory transduction system, regulatory protein [Desulfotalea psychrophila LSv54] gi|50877409|emb|CAG37249.1| probable sensory transduction system, regulatory protein [Desulfotalea psychrophila LSv54] Length = 526 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 22/207 (10%) Query: 71 LVIISITISLLLGYISGSIL--KELFISYNRISQLSRI-------DCLSGLLNHSAFISS 121 ++ S+ +L + S+L ++L N + +++R D L+G+ N + Sbjct: 317 IIFTSVVAFVLRAIVKKSVLTQEKLLEKKNELQEVNRKLKLVSSSDGLTGVFNRRTMDNF 376 Query: 122 LG-----SYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVG 173 L + EK SI F DID FK NDN+GH GD+ + +++QL + + V Sbjct: 377 LSREWARAMREKSSISFIMADIDNFKLYNDNYGHLTGDECLKKVAEQLRKIPHRSTDLVA 436 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEP 232 R GGEEF+ L ++ +AA +A D R+ IE+ QI + P+ + +TISAG++ K Sbjct: 437 RYGGEEFSLVLLNTT--DAASVAEDCRRAIEDLQIAHAFSPTSNVVTISAGVSTCIPKSG 494 Query: 233 I--STIIYRADQALYVAKKSGRNRVVC 257 + S ++ AD+ALY AK+ GRNR+ Sbjct: 495 MDSSLLVAAADKALYRAKRLGRNRIAT 521 >gi|229591092|ref|YP_002873211.1| putative transmembrane sensory box GGDEF domain protein [Pseudomonas fluorescens SBW25] gi|229362958|emb|CAY49889.1| putative transmembrane sensory box GGDEF domain protein [Pseudomonas fluorescens SBW25] Length = 352 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 88/190 (46%), Gaps = 10/190 (5%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---- 129 I + L LG+I L + LSR D LSGLLNH A+ L ++ Sbjct: 154 ILMVYPLALGWICYRQAVTLARHKRELLALSRTDSLSGLLNHGAWKDHLELEFQRCRRGC 213 Query: 130 ---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 +I DID+FK IND +GH GD V+ LS L GR GG+EF G Sbjct: 214 AGAAIALIDIDHFKIINDTYGHVTGDIVLRQLSKVLRQNLRATDLAGRYGGDEFCVILPG 273 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALY 245 A + + LR + + + P++ ++S G+A ST + ADQALY Sbjct: 274 MPLNRATEVMDALRDRF--NALAYAQDPTLRASLSIGLAPYQPSHADSTHWLNDADQALY 331 Query: 246 VAKKSGRNRV 255 AK SGRNRV Sbjct: 332 EAKSSGRNRV 341 >gi|127512610|ref|YP_001093807.1| diguanylate cyclase with PAS/PAC sensor [Shewanella loihica PV-4] gi|126637905|gb|ABO23548.1| diguanylate cyclase with PAS/PAC sensor [Shewanella loihica PV-4] Length = 496 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 +A IS L++ FDID+FK +ND GH VGD V+ ++ FVGR Sbjct: 356 AAAISRSNRQQTPLAVCIFDIDHFKAVNDKHGHLVGDDVLQRVAKIFSDAIRKTDFVGRW 415 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 GGEEF + ++ A A+ LR+ ++ I + IT+SAG++ C + Sbjct: 416 GGEEFVIILEDTDKEGAKHFADKLRQEVKRRSQGIDF--PVAITLSAGVSVYCQDDKQDC 473 Query: 236 IIYRADQALYVAKKSGRNRVV 256 + ADQALY AK+SGR+ VV Sbjct: 474 LFNHADQALYRAKESGRDCVV 494 >gi|304409412|ref|ZP_07391032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|307303770|ref|ZP_07583523.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] gi|304351930|gb|EFM16328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|306912668|gb|EFN43091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] Length = 920 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 10/171 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++ L+ D L+ L N F+ L N +L+ V D+D FK IND+FGH +G Sbjct: 491 QLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRLNLQLATVMIDVDLFKHINDSFGHSIG 550 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINI 210 D+++ L+ +L G + R+GG+EF A G E A +A N LR++ E I + Sbjct: 551 DEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNSEDATVAINQLRQVFEQPFI-V 609 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S+G + +T S G++ T++ AD A+Y AK GRN +++ Sbjct: 610 STGDHLRLTASMGVSLYPSDGTDADTLLRNADAAMYRAKNDGRNNYAFYTE 660 >gi|258405321|ref|YP_003198063.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense DSM 5692] gi|257797548|gb|ACV68485.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense DSM 5692] Length = 457 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 11/165 (6%) Query: 101 SQLSRI---DCLSGLLNHSAFIS----SLGSY---NEKLSIVFFDIDYFKQINDNFGHPV 150 QL+RI D L+ + F+ +L + + L++ DID+FKQIND +GH Sbjct: 285 EQLARIATTDSLTNVSTRQHFMELANRALAQHLRNSRPLTVCMLDIDHFKQINDTYGHGT 344 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ +A+ ++ + +GR GGEEF + + EA +A+ +R + + Sbjct: 345 GDRALAWFAETVSGELRATDIIGRFGGEEFCIVLPETDQDEAQQVAHRIRTAVTGGS-SA 403 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ P IT+S GIA + +I AD+ALY AK GRNR Sbjct: 404 AASPIPPITVSIGIALADTPASMEAVIQLADRALYAAKAKGRNRA 448 >gi|167463624|ref|ZP_02328713.1| hypothetical protein Plarl_13894 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 380 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 13/156 (8%) Query: 107 DCLSGL-LNH--SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL + H I ++ + +++ DID FKQIND FGH VGD ++ +SD + Sbjct: 226 DNLTGLYVRHYLDGQIKTMQKQDAIGTLILVDIDCFKQINDTFGHQVGDSILIQVSDIVR 285 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + R GGEE A +S+ E +A+++R I + PS +T+S G Sbjct: 286 SMIREQDITARWGGEELAIYLPVTSKNEGMQMADEIRTAIMQ-----KTSPS--VTVSCG 338 Query: 224 IAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 +A+ + + IS ++ Y+AD ALY AK+SG+NRVV Sbjct: 339 VADWKSTDDKISVESLFYKADMALYEAKRSGKNRVV 374 >gi|170288602|ref|YP_001738840.1| response regulator receiver modulated diguanylate cyclase [Thermotoga sp. RQ2] gi|170176105|gb|ACB09157.1| response regulator receiver modulated diguanylate cyclase [Thermotoga sp. RQ2] Length = 450 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%) Query: 104 SRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 S D L+GL N A F+ + + +++ DID FK+IND FGHPVGD+V+ +++ Sbjct: 295 SETDGLTGLFNKRAIMRFLEEVLRSGKNIAVAMMDIDDFKKINDTFGHPVGDEVLRAVAN 354 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHIT 219 L + VGR GGEEF + E++A + N + + I N G +T Sbjct: 355 ILRETVKSGK-VGRYGGEEF-MVVFETGERDAVVKTMNSIMENIRNFDWQKIFGSEKKVT 412 Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+A + P+ +I AD+ LY AK+SG++R V Sbjct: 413 LSGGVAFSKKESSPVE-LIEEADKKLYTAKRSGKDRYV 449 >gi|157373984|ref|YP_001472584.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157316358|gb|ABV35456.1| putative diguanylate cyclase (GGDEF domain) [Shewanella sediminis HAW-EB3] Length = 578 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 109/225 (48%), Gaps = 21/225 (9%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 G PF L Y E + ++I + ++L L + +E I+ ++ ++ID L+GL Sbjct: 362 GFIPFTDLTYRAAE-IGIIIDIVLLALALAVKFRATEREKLIAEHQ----AKIDPLTGLK 416 Query: 114 NHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 N AF S+ ++ +S++ DIDYFK IND +GH VGD+V+ + L Sbjct: 417 NRRAFYEITPSFWKQKRTRVGVSMIIIDIDYFKAINDTYGHTVGDEVLVQFATLLNKNLR 476 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 V R GGEEF + +EA+ ++ L + I I+ + +T S G+A Sbjct: 477 QQDIVARWGGEEFILLLPKTRLKEASTISKHLCESISKHAF-IADRNELQVTASIGLA-- 533 Query: 228 CHKEP----ISTIIYRADQALYVAKKSGRNRVVC--FSDIENNTC 266 H P + +I ADQ LY AK+ G+N++ D+ TC Sbjct: 534 -HGSPAQFTLEQLISLADQQLYRAKQRGKNQISYENSPDVPGGTC 577 >gi|324010125|gb|EGB79344.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2] Length = 364 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 25/199 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKSGR 252 R AD ALY AKK+ R Sbjct: 346 REWLKSADLALYKAKKARR 364 >gi|218900540|ref|YP_002448951.1| ggdef family protein [Bacillus cereus G9842] gi|218541164|gb|ACK93558.1| ggdef family protein [Bacillus cereus G9842] Length = 352 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 26/208 (12%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRI----------SQLSRIDCLSGLLN 114 L++++++V + + S++ GYI+ FIS N + Q + +D L+GL N Sbjct: 150 LIKDINIVGLYLISSIITGYIT-------FISANYVLQSNELFQTMKQYATVDALTGLGN 202 Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 F IS+ N+ L ++ DID+FK +ND +GHP GD+V+ + L Sbjct: 203 VRQFDLEMNRHISNKNMKNDSLCLLLIDIDHFKYVNDTYGHPAGDEVLKQVGCILRETSQ 262 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 P R GGEEFA + + +E+ + G I IT+S G++E Sbjct: 263 FPDLAFRKGGEEFALLIPNKGLAYGIRMGEQICIAVESHPFQLLDGTKIKITVSVGVSE- 321 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ I AD ALY +K++GRN+V Sbjct: 322 -YEGSSEQFIQAADDALYYSKRNGRNKV 348 >gi|329891029|ref|ZP_08269372.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] gi|328846330|gb|EGF95894.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] Length = 454 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ LN F+SS+ + + LS++ D+D+FK+IND GHPVGD+V+ + Sbjct: 292 DPLTRALNRR-FLSSILSREIGFANANHTPLSVLLLDVDHFKRINDTHGHPVGDEVLRQV 350 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ + FV R GGEEF + +S +AA +A +R + I + P I Sbjct: 351 AEAVTENVRPSDFVFRYGGEEFLVVLVETSLHQAATIAERMRLALAAKPIAAAGLPPFSI 410 Query: 219 TISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T S G+ A R H + + +I AD ALY AK++GRNRV Sbjct: 411 TASIGVAAHRGHPDE-NYLIKAADDALYRAKQNGRNRV 447 >gi|313673240|ref|YP_004051351.1| response regulator receiver modulated diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672] gi|312939996|gb|ADR19188.1| response regulator receiver modulated diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672] Length = 428 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 11/172 (6%) Query: 92 ELFISYNRISQLSRI-DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++ + N++ +S I D L+ L N F ++ N + SI+ DID+FK+IN Sbjct: 257 DMLDAKNKLLTISSITDDLTKLYNRRFFWETIEKEHKRHNRINSEYSIIMLDIDHFKKIN 316 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 DNFGH GD V++ ++ L V R GGEEF + ++ A ++AN + I Sbjct: 317 DNFGHGTGDLVLSDVAFSLKNSVRNTDIVARYGGEEFIVLLPDTKKENAIVVANKILNSI 376 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ S P IT+S G+A + II AD+ LY AK +GRNR+ Sbjct: 377 REIPVHFRSEP---ITVSIGLASSREGDNYEKIISLADERLYKAKNNGRNRI 425 >gi|312884767|ref|ZP_07744468.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367680|gb|EFP95231.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122] Length = 325 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 7/177 (3%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEKLSIV----FFDIDYFKQIND 144 + + ++ + +L+ D L+ +LN AF L ++N+ + V DID+FK+IND Sbjct: 131 ITQTYMDEKELRRLADTDELTQVLNRRAFTRHLEHAFNDSTTTVVSCLMIDIDHFKEIND 190 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+VI ++ + ++GRLGGEEF ++ +A +A +R+ + Sbjct: 191 RVGHLSGDEVITQVARICKDNIRSNDYIGRLGGEEFGIMLNRTNAIQAYDVAERIREAVA 250 Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S +I G I T+S GIAE H + ++ AD+A+Y +K++GRN+V D Sbjct: 251 SSSCHI-DGHIIVPTVSIGIAELTEHVTSVRELMVNADKAMYYSKQTGRNQVTVHHD 306 >gi|229086612|ref|ZP_04218781.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-44] gi|228696694|gb|EEL49510.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-44] Length = 431 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 15/213 (7%) Query: 53 IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112 I + F G E+I + L S+ L + + + EL Y QL+ D L+ + Sbjct: 222 IKMYNFEGEEFIFL----LRAASVPEDLSRFIVKCTDITELDELYQEQEQLAAFDPLTEI 277 Query: 113 LNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 N F L N ++++ FDID FK++ND +GH GD + L++ + Sbjct: 278 YNRLKFQQLLEEKWKSEERINRTMALILFDIDDFKKVNDTYGHDFGDLALIQLAELMKSK 337 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 G+ R GGE+F+ + ++E+E +A LR IE Q + S +T S G+A Sbjct: 338 MGSQHIFARWGGEKFSILVINTTEKEVFQVAESLRFFIETKQFSSISK----LTASFGVA 393 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +I RAD ALY AKK+G+N+V + Sbjct: 394 LYEQGITKEELIQRADIALYEAKKNGKNQVRLY 426 >gi|205358891|ref|ZP_02665133.2| AdrA protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340080|gb|EDZ26844.1| AdrA protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 365 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I I LL ++S +L R+ +S D ++G+ N + L + Sbjct: 169 TLSLPVI-ILYPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 227 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 228 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 287 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 288 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 338 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 339 YREWLKSADMALYKAKNAGRNRT 361 >gi|149191412|ref|ZP_01869663.1| hypothetical protein VSAK1_22129 [Vibrio shilonii AK1] gi|148834761|gb|EDL51747.1| hypothetical protein VSAK1_22129 [Vibrio shilonii AK1] Length = 395 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 68/193 (35%), Positives = 97/193 (50%), Gaps = 21/193 (10%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 +I+SI+ S+L I+G +K I+ LS D L+ L N A + + Sbjct: 202 LIVSISFSMLW-MINGRQVKA-------INALSYFDPLTQLGNRRALEVYIEEDLPKQLA 253 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD--QLVVVFGTPMFVGRLGGEEFAA 182 +S++ DID+FK IND +GH GDKVI +SD Q + G F R GG+E Sbjct: 254 RGTNVSVIMLDIDFFKMINDRYGHIAGDKVIRKVSDIIQDSLNGGNTTF--RFGGDEIMV 311 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 +A LA LR +E NI G I+ S G+A+ E +++ RAD+ Sbjct: 312 VLYDMDLHQARALAEQLRLRVEKYG-NI-KGEEFSISCSFGVAQLVDDESWDSLVGRADK 369 Query: 243 ALYVAKKSGRNRV 255 ALY AK+SGRN+V Sbjct: 370 ALYEAKESGRNKV 382 >gi|146305770|ref|YP_001186235.1| diguanylate cyclase [Pseudomonas mendocina ymp] gi|145573971|gb|ABP83503.1| diguanylate cyclase [Pseudomonas mendocina ymp] Length = 375 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 15/167 (8%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LSR D L+ L N F +++ E LS+V DID+FK++ND GH GD + Sbjct: 209 LSRTDSLTQLGNRYQFNNLFPSLVANALRQGEPLSLVLLDIDFFKKVNDEHGHAGGDACL 268 Query: 156 AFLSDQLVVVF---GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + ++++ VF G + RLGGEEF G++ +A +A R+ +E+ + ++ Sbjct: 269 SAFAERMRQVFRRDGDALL--RLGGEEFGVLLPGTTLAQAREMAERFRQELESEGLQLAD 326 Query: 213 GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +T S G+ ++ R D ALY AK+ GRNR+V Sbjct: 327 -QCLKLTTSLGVGSFDKRQDSDADAFFRRVDSALYRAKREGRNRLVA 372 >gi|87118234|ref|ZP_01074133.1| PAS:GGDEF protein [Marinomonas sp. MED121] gi|86165868|gb|EAQ67134.1| PAS:GGDEF protein [Marinomonas sp. MED121] Length = 299 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 9/172 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144 E + N++ +LSR D L+GL+N F + N S++ DIDYFK+IND Sbjct: 125 EYIYTQNKLEELSRTDPLTGLINRRVFDEMAEKEFYRYQNQNIHYSLLALDIDYFKRIND 184 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD V+A S + + R+GGEEF + + A +A LR+ I Sbjct: 185 KYGHLTGDYVLASFSTLCEKNIRSQDKIARIGGEEFCIILPATDKVGAIEVAEKLRRAIS 244 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 N++ I +T+S G+++ + ++ RAD+ LY AK GRN+V Sbjct: 245 NARFK-QDEHEIAVTVSIGVSQVKMSDYDYVAMLKRADENLYRAKHQGRNQV 295 >gi|312962171|ref|ZP_07776663.1| GGDEF domain protein [Pseudomonas fluorescens WH6] gi|311283508|gb|EFQ62097.1| GGDEF domain protein [Pseudomonas fluorescens WH6] Length = 310 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 1/128 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS++ DID+FK IND +GH GD V+ ++ + V R GGEEF +S Sbjct: 181 LSLLMLDIDHFKNINDTYGHAAGDNVLRTVATAIKSQLRNVDMVFRFGGEEFLILLSNTS 240 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 + AA++ LR+ + +Q + G I +T+S G + E +++ RAD ALYVAK Sbjct: 241 REAAAMVGERLRQAAQ-TQDYWAEGERIALTVSLGCSTLLAAESAESLLRRADNALYVAK 299 Query: 249 KSGRNRVV 256 + GRNR+ Sbjct: 300 REGRNRLA 307 >gi|197337919|ref|YP_002157933.1| sensory transduction protein kinase [Vibrio fischeri MJ11] gi|197315171|gb|ACH64620.1| sensory transduction protein kinase [Vibrio fischeri MJ11] Length = 444 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 6/160 (3%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 Y ++S + D ++G + L + E S + DID+FK++ND +GH GD VI Sbjct: 282 YVKVSIMRSYDHMTGFYRRDFYEPKLKAL-ESASFLMIDIDHFKRVNDTYGHDFGDIVIQ 340 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +S ++ R GGEEF + + A +RK+IEN I+ I Sbjct: 341 QVSYRIKNCIRVNDIAIRWGGEEFIVIFQKIDQDDLMNKAEVIRKVIENKSID-----GI 395 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +ITIS G A++ E ++ +I RAD ALY +K +GRNRV Sbjct: 396 NITISIGGAKQRDFESVNEVIKRADAALYDSKNTGRNRVT 435 >gi|163742996|ref|ZP_02150379.1| diguanylate cyclase, putative/response regulator [Phaeobacter gallaeciensis 2.10] gi|161383679|gb|EDQ08065.1| diguanylate cyclase, putative/response regulator [Phaeobacter gallaeciensis 2.10] Length = 476 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 29/176 (16%) Query: 107 DCLSGLLNH---SAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GL N F+ + S + E +++ D+D+FKQIND +GHPVGD V+ + Sbjct: 296 DPMTGLFNRRYAKPFLERVASTSAKTGETFAVMLADLDHFKQINDLYGHPVGDAVLIEAA 355 Query: 160 DQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQINISS-GPSI 216 +L + R+GGEEF A+G + EAA A+DL I + +I I Sbjct: 356 KRLQTALRPVDLLARVGGEEFMIVMPAIGEAMAEAA--ASDLCNRINSKPFHIRGVDAPI 413 Query: 217 HITISAGI-----------------AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 H+TIS G+ A + H +S +I AD+ALY AK +GRN+V Sbjct: 414 HVTISIGVVIGGRAAAVDQRDGIDLAPQDHDSAVSALITNADRALYSAKHAGRNQV 469 >gi|146307747|ref|YP_001188212.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas mendocina ymp] gi|145575948|gb|ABP85480.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas mendocina ymp] Length = 717 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 14/187 (7%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDID 137 ++ + EL + ++ L+ D L+ L N + I+ L ++ + +++F D+D Sbjct: 263 LTARDISELKQAQAQVQHLAYHDALTNLPNRAMLINRLTQQIALLKRHDMRSALLFIDLD 322 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK IND+ GHPVGD V+ ++ +L V RLGG+EF G + + + Sbjct: 323 HFKHINDSLGHPVGDAVLRLVTARLEATVRLEDTVARLGGDEFVVLLCGLQGKRSEV-TR 381 Query: 198 DLRKIIEN-----SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251 +R++ E ++ + G + +T S GIA H E + ++ RAD ALY AK SG Sbjct: 382 QVRQVAEKLRHLLAEPMLLDGHHLQVTPSIGIALIPDHGETPADLLKRADIALYRAKDSG 441 Query: 252 RNRVVCF 258 RN + F Sbjct: 442 RNAIQLF 448 >gi|296445716|ref|ZP_06887670.1| diguanylate cyclase [Methylosinus trichosporium OB3b] gi|296256819|gb|EFH03892.1| diguanylate cyclase [Methylosinus trichosporium OB3b] Length = 378 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 12/183 (6%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFF 134 +LG ++ KE + I+ +S D L+G+ N AF ++ S +K +++ F Sbjct: 197 ILGVTLVALSKERLANRREIAAMS--DPLTGVANRRAFDRAIERATKSASVKQKSAVLVF 254 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+D FK IND FGH VGD+++ + + R+GGEEFAA + A Sbjct: 255 DLDNFKDINDRFGHAVGDQILTVFGEAATRNIRANDMLARIGGEEFAALLCPADRNVALA 314 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253 +A +R ++ ++ G T+S G+A + P R AD ALY AK SGRN Sbjct: 315 VAERIRLAFIDAASVLAEG---QATVSIGVALVEGRAPDYRETTRAADAALYRAKASGRN 371 Query: 254 RVV 256 RVV Sbjct: 372 RVV 374 >gi|152996746|ref|YP_001341581.1| putative periplasmic ligand-binding sensor protein [Marinomonas sp. MWYL1] gi|150837670|gb|ABR71646.1| putative periplasmic ligand-binding sensor protein [Marinomonas sp. MWYL1] Length = 965 Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N AF L + L+++ DID+FK+IND++ H +GDK I L+ Sbjct: 807 DKLTGLPNRRAFDKWLSEKFIQAKQQHTPLALIIMDIDHFKKINDHYSHLIGDKAIKALA 866 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 QL+ + + R GGEEF ++ A +LR IE + + +T Sbjct: 867 KQLLQLADHQIHAARWGGEEFTLMIKDMNDANVAAYCENLRNSIETYDYS-DIAADLTMT 925 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+A E ++ ADQALY AK+ GRNRV Sbjct: 926 VSMGVAFSHQVENYQDLLRLADQALYRAKEQGRNRV 961 >gi|300785226|ref|YP_003765517.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis mediterranei U32] gi|299794740|gb|ADJ45115.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis mediterranei U32] Length = 396 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 8/168 (4%) Query: 95 ISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + +++ +R D +GLLN H +L ++ ++ D+D+FK+IND GHPV Sbjct: 225 VQLDQLKLAARTDQRTGLLNAIAWHEQAEHALERTRGRIGVLMIDLDWFKRINDTHGHPV 284 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+A ++ L VGR GGEEFA E E +A +R I +I Sbjct: 285 GDDVLAEVATVLTRTVRRGDTVGRYGGEEFAVLLPDVDEAEVRAIAERIRLRIRGLRITA 344 Query: 211 SSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255 +G ++ ++ + G A EP + +I AD ALY KK+GR+RV Sbjct: 345 PTGEAVTLSATIGAALDP-AEPGAGLDEMIRAADDALYAGKKAGRDRV 391 >gi|220935751|ref|YP_002514650.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] gi|219997061|gb|ACL73663.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] Length = 568 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 24/174 (13%) Query: 98 NRISQLSRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQINDNFGHPV 150 +++ L+ D L+GL N +F + LG + D+D+FK +ND GH Sbjct: 398 QQLAHLATTDPLTGLANRRSFFEAAERELGRSRRAGYATVVAMLDLDHFKDVNDTHGHAA 457 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ +S LV VGRLGGEEF + S A R+I+E + + Sbjct: 458 GDRILELVSRVLVKELRDADLVGRLGGEEFGLLLVDVSVAHA-------REIVERIRTRV 510 Query: 211 ---SSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVC 257 +G + +T+SAGIA+ C +P + + AD+ALY AK+ GRNRV+ Sbjct: 511 MHCDTGLDLSVTLSAGIAD-C--DPAMLGLDVAMALADRALYEAKRQGRNRVIT 561 >gi|194451887|ref|YP_002044417.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194410191|gb|ACF70410.1| AdrA protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 370 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I I LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVI-ILYPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|158338089|ref|YP_001519265.1| response regulator receiver modulated diguanylate cyclase protein [Acaryochloris marina MBIC11017] gi|158308330|gb|ABW29947.1| response regulator receiver modulated diguanylate cyclase protein, putative [Acaryochloris marina MBIC11017] Length = 330 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 11/175 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIND 144 EL ++ +++ ++S ID L+ + N F S + + LS++ D+D+FK ND Sbjct: 148 ELKVANHKLEKISAIDSLTHINNRRRFDSIFLAEWIRMMRERQPLSLILCDVDHFKAYND 207 Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GHP GDK + ++ + V + V R GGEEF + + A +A +R I Sbjct: 208 TYGHPAGDKCLQQVARAISTVAKRSADCVARYGGEEFVVVLPNTDQSGAVHVAEAIRTEI 267 Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255 E I + SS S ++++S G+A + I S +I DQALY+AKK GRNR Sbjct: 268 EALSIPHCSSTVSQYVSLSLGVASIIPSKAIAPSQLIELTDQALYMAKKRGRNRT 322 >gi|163851175|ref|YP_001639218.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163662780|gb|ABY30147.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 417 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 26/263 (9%) Query: 4 SLKDFLSIW--LCHEKNLESFSPHTFMIYFSIFFSIFIAT--VIFIANIFLFYIGLTPFY 59 +L L +W L ++ ++ + ++ F +F F+ T VI AN L +P Sbjct: 130 ALSTALCMWEILRTPASMRLWTQYIVLLGFGGYFIAFLLTIGVIHFANERL----ASPES 185 Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 G+ +L + V I + GY++ ++ E ++ ++S+L+ D L+GL N Sbjct: 186 GIYSLLFDLWCGVFIQV------GYLA--MVSER--AHLKLSRLADTDPLTGLANRRGLF 235 Query: 120 SSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 ++L + +I+ DID+FK IND +GH GD + +++L V V Sbjct: 236 AALSQRAGLSPSPPRCAILLADIDHFKAINDTYGHDGGDAALVGFAERLRGVMRKDDLVA 295 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEP 232 R GGEEF + AA +A LRK + +G ++ +T S G+A +E Sbjct: 296 RWGGEEFLVVLDQADATAAATVAERLRKSAAGQPFTV-NGAAVTVTASIGVAVVAAGEER 354 Query: 233 ISTIIYRADQALYVAKKSGRNRV 255 I + RAD ALY AK++GRNRV Sbjct: 355 IDAALSRADAALYAAKRAGRNRV 377 >gi|78777234|ref|YP_393549.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78497774|gb|ABB44314.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Sulfurimonas denitrificans DSM 1251] Length = 427 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 86/180 (47%), Gaps = 27/180 (15%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLS----IVFFDIDYFK 140 +L EL+I+ D L+ L N + F I+ + + K +V DID+FK Sbjct: 264 KLLAELYIT----------DSLTKLYNRAYFDETINMIVKHQRKADSDFILVLVDIDHFK 313 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH VGD+V+ ++ L + R GGEEF I N+ + Sbjct: 314 LINDTYGHQVGDEVLVAIAKTLKGSLRDNDLIARWGGEEFVIML-------KNITLNEAK 366 Query: 201 KIIENSQINISSG---PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IIE ++NI + +I +T S G+ + E I RAD ALY AKK GRNRVV Sbjct: 367 TIIEKVRVNIQNSIIRDNIKVTASFGLTKYIINEDSKEIFKRADDALYEAKKDGRNRVVV 426 >gi|325921139|ref|ZP_08183010.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] gi|325548411|gb|EGD19394.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] Length = 959 Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 8/174 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +L L I + + + D L+GL N F IS L + DID+FK+ Sbjct: 784 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSGRSLVLAILDIDHFKR 843 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND++ H GD V+ + L+ RLGGEEFA +S +EA L +R Sbjct: 844 INDHYSHASGDAVLHEVGVLLIAAARASDLPARLGGEEFALLLADTSLEEAQALCLRIRA 903 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + Q + + +T SAG+AE + S+++ RAD ALY AK +GR+R+ Sbjct: 904 LFHARQ-DWGGVDGLQVTFSAGVAELRDDDTGSSLMQRADHALYEAKSAGRDRI 956 >gi|264680167|ref|YP_003280076.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262210682|gb|ACY34780.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 521 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 10/180 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 L+ + + ++ L+R D L+GL N L + S++F DID FK Sbjct: 320 LQRRIHAESELALLARTDGLTGLNNRRRLDEMLDQEWHRARRNHSIFSLLFVDIDRFKVY 379 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD VIA ++ + P R GGEEF +S + A+ LA +R Sbjct: 380 NDTYGHQAGDDVIATIAQCIGDNIRRPGDIAARYGGEEFIVVLPDTSLEGASCLAESIRA 439 Query: 202 IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + S +IT+S G A E H ++++I AD+ALY AK +GRN+VV F+ Sbjct: 440 AVSQLSVEHSGSEFGYITVSIGCAAWEPEHDADVASVIRSADEALYKAKTTGRNKVVVFT 499 >gi|238894037|ref|YP_002918771.1| hypothetical protein KP1_1983 [Klebsiella pneumoniae NTUH-K2044] gi|238546353|dbj|BAH62704.1| putative membrane protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 306 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 80/154 (51%), Gaps = 13/154 (8%) Query: 107 DCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 D L+ L N FI ++ + L ++ DID+FK+IND++GH VGD+V+ L QL + Sbjct: 151 DELTQLPNRRFFIDTIREKSGHALGLMILDIDFFKKINDSWGHLVGDEVLFSLGKQLAKL 210 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL----RKIIENSQINISSGPSIHITIS 221 + R+GGEEFA G SE E LA + R I+ N Q +S IS Sbjct: 211 TSEQVQPARIGGEEFAIIVDGLSEPELHALAQSILANARTILINHQTPLS--------IS 262 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G+ E T I + D+ALY AK +GR RV Sbjct: 263 IGVGTWRPGEAQETFIRKVDEALYKAKHNGRGRV 296 >gi|238026056|ref|YP_002910287.1| diguanylate cyclase [Burkholderia glumae BGR1] gi|237875250|gb|ACR27583.1| Diguanylate cyclase [Burkholderia glumae BGR1] Length = 395 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 1/139 (0%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 LS++ D+D+FK IND +GH GD V+ ++ ++ +GRLGGEEFA Sbjct: 250 GTPLSLLLIDLDHFKSINDTYGHAGGDAVLREFAELMLQKLRGGDALGRLGGEEFAVLLP 309 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 ++ +A +A+ LR + + ++G + T S G+A R E + RAD+ALY Sbjct: 310 RTTLSDALRIADRLRDEVSRHTVETAAGLCSYST-SGGLASRMPGETFEQMSARADRALY 368 Query: 246 VAKKSGRNRVVCFSDIENN 264 AK SGRNRV + + + Sbjct: 369 DAKVSGRNRVCAHAGMSQS 387 >gi|188997461|ref|YP_001931712.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932528|gb|ACD67158.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp. YO3AOP1] Length = 800 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 2/131 (1%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 +K +I+ D+D FK+IND FGH +GD+++ + L + +GR GGEEF + Sbjct: 414 KKFAILMLDMDDFKRINDTFGHDLGDEILKEIVKILKNIRRQQDIIGRYGGEEFIILSPD 473 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245 + +EA +A D+RK I + + I+I++S GIAE H S ++ AD ALY Sbjct: 474 ADGKEALNIAEDIRKAISEKPVVVRDN-KIYISVSIGIAEFPIHGNSPSELLKAADIALY 532 Query: 246 VAKKSGRNRVV 256 AKK G+N+ V Sbjct: 533 KAKKEGKNKAV 543 >gi|157373721|ref|YP_001472321.1| GGDEF domain-containing protein [Shewanella sediminis HAW-EB3] gi|157316095|gb|ABV35193.1| GGDEF domain [Shewanella sediminis HAW-EB3] Length = 625 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 9/171 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDN 145 L IS + ++ D L+GL N I + S++ FDID FK IND Sbjct: 449 LLISRRTLKVRAQTDFLTGLANRGHTFKKGQKIIEKTIKKQQPASVIMFDIDDFKSINDR 508 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH +GD I +S + VGR+GGEEF +S+ EA +A+ LR IE Sbjct: 509 YGHHIGDLAIKSVSKRTRRWLKKHDLVGRIGGEEFLIVLENTSQTEAYDIADRLRHNIE- 567 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 Q ++ +TIS G+A H + ++ +AD ALY AK SG+N+V Sbjct: 568 EQFFQFDDVTVELTISLGVAALNEHTTTLIGLMKQADDALYRAKFSGKNKV 618 >gi|152964407|ref|YP_001360191.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] gi|151358924|gb|ABS01927.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] Length = 494 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 32/177 (18%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 + + +R D L+GL N +AF +L G + S+ F D+D FK +ND GH GD+V+ Sbjct: 332 LRRQARTDALTGLANRTAFGEALDRAAGDPTARFSVAFVDLDDFKAVNDGRGHAAGDEVL 391 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-------------KI 202 ++ +L RLGG+EF A+L DLR + Sbjct: 392 RAVAARLRAAVREEDLCARLGGDEF------------AVLLRDLRGECVDALTARLAGAV 439 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +E I ++ GP + + S G+A R E ++ AD A+Y AK +GRNRV F Sbjct: 440 VE--PIPVAGGP-VRVGASVGVAHRGPGEDAEQVLQHADVAMYAAKAAGRNRVRVFG 493 >gi|330939651|gb|EGH42955.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 308 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 Y +Q + D L+ N A SL + + LS++ DID+FK++ND +GH Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ L V R GGEEF + A ++ L + + N + Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGADSAELIGQRLCQAVRNLEFR 259 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S P++ +T+S G + E +++ RAD ALYVAK+ GRNR+ S Sbjct: 260 ELS-PALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRIAMAS 308 >gi|262164399|ref|ZP_06032137.1| GGDEF family protein [Vibrio mimicus VM223] gi|262026779|gb|EEY45446.1| GGDEF family protein [Vibrio mimicus VM223] Length = 326 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQI 142 +++ +Y I S D L+GLLN I+ N +L I D+D+FK I Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRNTFAINPSAEGNHQLWIAMLDLDHFKAI 191 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+FGH +GD+++ + Q+ FG + R GGEEF EQ + R+ Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIVFSTGDEQAINRTLDGFRRH 251 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I P I ++ SAG + + TI+ AD+ALY AK+ GR++V C+ ++ Sbjct: 252 IRQHTF-----PRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRDQVHCYENL 306 >gi|239909013|ref|YP_002955755.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239798880|dbj|BAH77869.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 555 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 8/165 (4%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N F + G L++ D+D+FK +ND GHPVGD+++ +S Sbjct: 375 DALTGCANRRRFGEAVAMAAAEAGRSGAPLALAMIDLDHFKLVNDRHGHPVGDRMLRHVS 434 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + RLGGEEFA G E A + +R I + +++ G + T Sbjct: 435 GLIRGRLRPGELLARLGGEEFAVLLPGLDEAAARSRMDAVRLEIAATPLSV-DGLDVPQT 493 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 +S G+ +P+ + AD ALY+AKK GR++VV S ++ Sbjct: 494 VSVGVTADTGGKPVQELQREADMALYLAKKCGRDQVVAASCVDTR 538 >gi|27367856|ref|NP_763383.1| putative two-component response regulator and GGDEF family protein YeaJ [Vibrio vulnificus CMCP6] gi|27359429|gb|AAO08373.1| Putative two-component response regulator and GGDEF family protein YeaJ [Vibrio vulnificus CMCP6] Length = 451 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 12/166 (7%) Query: 96 SYNRISQLSRI------DCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNF 146 S R QL + D L+GL N F +L + + +++ D D FK IND F Sbjct: 289 SKTRKQQLDEVSSEVIKDELTGLHNRKIFNDTLFKDTLEDSQYTVIAIDGDGFKNINDTF 348 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH VGD+VI + + F F+ R GG+EF A ++A+ L L++ ++NS Sbjct: 349 GHHVGDEVICQVGKSMKATFRRGDFLIRTGGDEFLAILPDCDHRKASELVGKLKQHLKNS 408 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 + + I +SAG+A R E + ++ +AD+ALY AK+S R Sbjct: 409 TLPY---KDLTIAVSAGVATRAQGETLQELMMQADEALYKAKESRR 451 >gi|51244314|ref|YP_064198.1| hypothetical protein DP0462 [Desulfotalea psychrophila LSv54] gi|50875351|emb|CAG35191.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 481 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 20/198 (10%) Query: 72 VIISITISLLLGYISGSILKELFISY-------NRISQLSRIDCLSGLLNHSAF---ISS 121 ++I++ ISL+ I+G IL F +Y ++ +++ D L+G+ N F + Sbjct: 285 LMINLGISLI---ITGIIL---FFAYLTIGGYQRKLEEMATTDSLTGIANRQIFDILFNQ 338 Query: 122 LGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + ++ + LS + FD+D+FK+IND++GHP GD ++ +S + + R GG Sbjct: 339 MSKHSRRQGWPLSAIMFDLDHFKKINDSYGHPAGDLILKAVSQIAQNILRDSDILCRWGG 398 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 EEF + +A +A +R+ +E + I + I IT S G+ + +I Sbjct: 399 EEFLILLPNCNTAQAQGVAEKIRQGLETASELIYNQQLISITASFGLTTLQDYDSKDELI 458 Query: 238 YRADQALYVAKKSGRNRV 255 RAD ALY AK++GRNRV Sbjct: 459 KRADIALYAAKENGRNRV 476 >gi|90424799|ref|YP_533169.1| response regulator PleD [Rhodopseudomonas palustris BisB18] gi|90106813|gb|ABD88850.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris BisB18] Length = 457 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N + L + E+ L+++ DID+FK IND++GH GD V Sbjct: 290 EMAITDGLTGLHNRRYMETHLATLAEQAGVRGKPLALMMLDIDFFKAINDSYGHDAGDDV 349 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + ++ R GGEEF + A ++A LR+ I I G Sbjct: 350 LREFAVRIRKSIRGIDLACRYGGEEFVVVMPETDLAVAGMVAERLRRAIAGELFAIEKGA 409 Query: 215 S-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 I +TIS G++ K EPI+ ++ RAD ALY AK GRNRVV + Sbjct: 410 KRIEVTISIGLSTLEKKGEPIADVLKRADVALYRAKHDGRNRVVATA 456 >gi|157825448|ref|YP_001493168.1| response regulator PleD [Rickettsia akari str. Hartford] gi|157799406|gb|ABV74660.1| response regulator PleD [Rickettsia akari str. Hartford] Length = 450 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 90/191 (47%), Gaps = 13/191 (6%) Query: 79 SLLLGYISGSILKELFIS--YNRISQ---LSRIDCLSGLLNHSAF-------ISSLGSYN 126 S LL I + ++ + +N + Q L+ D L+GL N F I + + Sbjct: 258 SELLARIRTQLRRKQYQDNLHNDLEQSVNLAAKDGLTGLFNRRYFDIHLKQMIEKANNES 317 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 KL ++ DID FK +ND +GH GDKV+ +S L + R GGEEF Sbjct: 318 IKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTD 377 Query: 187 SSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPISTIIYRADQALY 245 +A A +R IE +I + TIS G+ E E I + I RAD+A+Y Sbjct: 378 IDISKAIETAERIRVKIEYMDFHIEDQIEPLQKTISIGVTEYKKAESIESFIERADKAMY 437 Query: 246 VAKKSGRNRVV 256 AK +GRN+VV Sbjct: 438 EAKTTGRNKVV 448 >gi|171316354|ref|ZP_02905574.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] gi|171098483|gb|EDT43285.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] Length = 452 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 14/178 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 + LF ++ + + S D L+G N H+ F+ + E LS++ D+D+FK Sbjct: 275 QRLFEAHTILIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDHFKAY 333 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD + +++ L P V R GGEEFA + + A ++A + R+ Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARLVAEEARE 393 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 + + + S P+ +++S G A E +ST +I AD ALY AK +GRNRVV Sbjct: 394 AVLRLDLAMPSSPAGRVSVSVGCATVSADE-LSTPDALIEAADAALYRAKDAGRNRVV 450 >gi|197119303|ref|YP_002139730.1| diguanylate cyclase heme-binding site [Geobacter bemidjiensis Bem] gi|197088663|gb|ACH39934.1| diguanylate cyclase, putative heme-binding site [Geobacter bemidjiensis Bem] Length = 432 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 13/179 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 L+EL + + + D ++G+LN L S Y L+++FFD+D FK I Sbjct: 253 LQELKQANALLQSQATTDPVTGILNRRKCCELLESAIMESKRYGLPLALIFFDVDRFKSI 312 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-K 201 ND +GH GD V+ L+ + + R GGEEF + + A +LA +R + Sbjct: 313 NDTYGHDAGDSVLRELAGLVSGMIRKTDIFSRFGGEEFVLVVHNNDGRTARMLAEKIRSR 372 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++S I++ +T S G+A + +++ RADQA+Y AK +GRNRV D Sbjct: 373 VSQHSFIHVG-----QVTASFGVARLYPDDSAESLVKRADQAMYSAKHAGRNRVESLCD 426 >gi|126725221|ref|ZP_01741064.1| two component diguanylate cyclase [Rhodobacterales bacterium HTCC2150] gi|126706385|gb|EBA05475.1| two component diguanylate cyclase [Rhodobacterales bacterium HTCC2150] Length = 134 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 1/129 (0%) Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + D+D+FKQ+ND +GH GD V+ +S +L + R GGEEF A ++++ Sbjct: 1 MLLDLDHFKQVNDKYGHVAGDIVLTEVSARLKANLRHIDLISRFGGEEFLAILTDTTKER 60 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250 A I+A LR++I+ + ++ G +I +T+S G+A + + ++ AD ALY +K Sbjct: 61 AVIVAERLRRLIQEQPVCLADGTNIQVTVSIGMALSDANSAQCAAMLKDADGALYASKAE 120 Query: 251 GRNRVVCFS 259 GRN V S Sbjct: 121 GRNLVTIAS 129 >gi|237730985|ref|ZP_04561466.1| inner membrane protein yeaI [Citrobacter sp. 30_2] gi|226906524|gb|EEH92442.1| inner membrane protein yeaI [Citrobacter sp. 30_2] Length = 473 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 5/156 (3%) Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D ++ + N F SL S K + ++ DID FK+IND +GH GD+VI + D + Sbjct: 316 DAMTKIYNRKLFYKSLKSSLAKGTVCVMVLDIDKFKRINDTYGHQEGDRVIISIVDIVNK 375 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAG 223 R+GGEEFA + + EA ++A +R+ +EN + I S +TIS G Sbjct: 376 SIRDTDIFARVGGEEFAILLKCNDKDEAIVVAERIRRNVENGTTIPNSYNLKEKMTISIG 435 Query: 224 I-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + E ++ AD ALY AK SGRN+ VC+ Sbjct: 436 VYCSKIDDESADKVVSYADAALYEAKNSGRNK-VCY 470 >gi|322614666|gb|EFY11595.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620185|gb|EFY17057.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623479|gb|EFY20318.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629223|gb|EFY26002.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631943|gb|EFY28697.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637319|gb|EFY34021.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642005|gb|EFY38615.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646232|gb|EFY42746.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652501|gb|EFY48855.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653336|gb|EFY49669.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660515|gb|EFY56751.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664667|gb|EFY60860.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669280|gb|EFY65430.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670826|gb|EFY66959.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678936|gb|EFY74991.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681964|gb|EFY77989.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685207|gb|EFY81204.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194445|gb|EFZ79640.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197019|gb|EFZ82161.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323206911|gb|EFZ91864.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210319|gb|EFZ95211.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214561|gb|EFZ99312.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223118|gb|EGA07461.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227067|gb|EGA11248.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230115|gb|EGA14235.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233853|gb|EGA17942.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238453|gb|EGA22511.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244141|gb|EGA28150.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246301|gb|EGA30284.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251927|gb|EGA35790.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257924|gb|EGA41603.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261063|gb|EGA44655.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265007|gb|EGA48506.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272570|gb|EGA55977.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 370 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL++I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLLVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|296272932|ref|YP_003655563.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296097106|gb|ADG93056.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] Length = 610 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 +K+ ++ D+D+FK +ND +GH +GDKV+ LS L + R GGEEF +G Sbjct: 466 KKIGLLMLDMDHFKAVNDEYGHDIGDKVLKSLSRILEENVRESDIIVRYGGEEFMVLLIG 525 Query: 187 SSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-STIIYRADQAL 244 +E+A+ +A+ + + ++IN+ +G +I T+S G++ + T++ +D AL Sbjct: 526 VDSEESAMNIAHKIGAKVRENEINVYAGTTIKKTVSIGLSMFPDDSSLFETVVKNSDIAL 585 Query: 245 YVAKKSGRNRVVCFS 259 Y AK SGR++VV FS Sbjct: 586 YEAKSSGRDKVVRFS 600 >gi|254560871|ref|YP_003067966.1| diguanylate cyclase [Methylobacterium extorquens DM4] gi|254268149|emb|CAX24038.1| putative diguanylate cyclase with GGDEF motif; putative membrane protein [Methylobacterium extorquens DM4] Length = 417 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 26/263 (9%) Query: 4 SLKDFLSIW--LCHEKNLESFSPHTFMIYFSIFFSIFIAT--VIFIANIFLFYIGLTPFY 59 +L L +W L ++ ++ + ++ F +F F+ T VI AN L +P Sbjct: 130 ALSTALCMWEILRTPASMRLWTQYIVLLGFGGYFIAFLLTIGVIHFANERL----ASPES 185 Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 G+ +L + V I + GY++ ++ E ++ ++S+L+ D L+GL N Sbjct: 186 GIYSLLFDLWCGVFIQV------GYLA--MVSER--AHLKLSRLADTDPLTGLANRRGLF 235 Query: 120 SSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 ++L + +I+ DID+FK IND +GH GD + +++L V V Sbjct: 236 AALSQRAGLSPSPPRCAILLADIDHFKAINDTYGHDGGDAALVGFAERLRGVMRKDDLVA 295 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEP 232 R GGEEF + AA +A LRK + +G ++ +T S G+A +E Sbjct: 296 RWGGEEFLVVLDQADATAAATVAERLRKSAAGQPFTV-NGAAVTVTASIGVAVVAAGEER 354 Query: 233 ISTIIYRADQALYVAKKSGRNRV 255 I + RAD ALY AK++GRNRV Sbjct: 355 IDAALSRADAALYAAKRAGRNRV 377 >gi|238762994|ref|ZP_04623961.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638] gi|238698752|gb|EEP91502.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638] Length = 372 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 3/164 (1%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +Y + + ID L+ L N ++ ++++ S + ++ D+D+FK +ND +GH GD Sbjct: 186 AYFAMKSRANIDKLTQLNNRASVEYRLATIHSTRQACGLLILDLDHFKLVNDTYGHDGGD 245 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ + L+ V FVGR GGEEF Q +A +R+ +EN ++ ++ Sbjct: 246 ILLTEVGRLLMSVTRDEDFVGRYGGEEFIIITHSHDPQTIKAVAERIRQCVENLEVQLAD 305 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I T S G + + + D+ALY AK GRNRVV Sbjct: 306 GRKIKATTSIGASLYLPGMSMLKALKMTDEALYQAKGQGRNRVV 349 >gi|207739005|ref|YP_002257398.1| signal transduction protein ggdef domain [Ralstonia solanacearum IPO1609] gi|206592376|emb|CAQ59282.1| signal transduction protein ggdef domain [Ralstonia solanacearum IPO1609] Length = 347 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 12/178 (6%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 F + +++ + D L+G L F + + E L ++ D+D+FK IND + Sbjct: 163 FAAEAQLADRANTDHLTGRLARQRFFELGAFAVERARHHGEPLCALYLDVDHFKSINDAW 222 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+ + LSD+L V GRLGG+EFA G + A + L+ + Sbjct: 223 GHAAGDEALVALSDELAGVLRPHDLFGRLGGDEFAVLLPGCNLAAALAVVERLKTAVAAH 282 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + P +T+S G A ++ ++ ++ AD AL AK+ GRNRV S N+ Sbjct: 283 R-----HPMGRLTVSVGAAPLRPRQELAHLLADADLALIEAKRRGRNRVCVSSGSAND 335 >gi|149187081|ref|ZP_01865387.1| hypothetical protein ED21_23488 [Erythrobacter sp. SD-21] gi|148829292|gb|EDL47737.1| hypothetical protein ED21_23488 [Erythrobacter sp. SD-21] Length = 645 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 17/182 (9%) Query: 93 LFISYNRISQLSR-------IDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQ 141 L + NR R D L+G+ N A +LG + K ++I D+D FK Sbjct: 204 LEVERNRARDAERSAQKQASTDPLTGIANRRALTRALGDHTSKEAGDIAIASIDLDGFKP 263 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLR 200 IND FGH GD +A ++ +LV FG+ V R+GG+EFA +G + A+ A +L Sbjct: 264 INDVFGHDTGDIALACIATRLVEKFGSESLVARMGGDEFAILWMGPGARTNALSALPELT 323 Query: 201 KIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I S+ + G ++ I G+A + +EP S ++ +AD ALY AK G + F Sbjct: 324 AAI--SEPLEAGGRTLRIGGCVGVAMGDGSGQEP-SALLSQADAALYEAKAKGSGKSAVF 380 Query: 259 SD 260 SD Sbjct: 381 SD 382 >gi|148556371|ref|YP_001263953.1| diguanylate cyclase [Sphingomonas wittichii RW1] gi|148501561|gb|ABQ69815.1| diguanylate cyclase [Sphingomonas wittichii RW1] Length = 343 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 8/159 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAF 157 ++ D L+ LLN AF ++ ++ L S+ F D+D+FK IND +GH +GD V+ Sbjct: 180 AKQDHLTRLLNLRAFREAMQAHAGDLRPDGGFSVAFVDVDHFKAINDRYGHAIGDAVLVA 239 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L+ L P V R+GGEEFA G+ EAA A +R + Q++ + G ++ Sbjct: 240 LARTLEAAVRAPGEVARIGGEEFAILLPGADLAEAAPAAERMRAAVAAMQVD-AGGATLS 298 Query: 218 ITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G+ A R + I ++ AD A+Y AK+ GRNRV Sbjct: 299 VTVSIGLAASRSSFDTIDALLQAADAAMYEAKRGGRNRV 337 >gi|83749693|ref|ZP_00946673.1| Hypothetical Protein RRSL_00567 [Ralstonia solanacearum UW551] gi|83723655|gb|EAP70853.1| Hypothetical Protein RRSL_00567 [Ralstonia solanacearum UW551] Length = 373 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 12/178 (6%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 F + +++ + D L+G L F + + E L ++ D+D+FK IND + Sbjct: 189 FAAEAQLADRANTDHLTGRLARQRFFELGAFAVERARHHGEPLCALYLDVDHFKSINDAW 248 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+ + LSD+L V GRLGG+EFA G + A + L+ + Sbjct: 249 GHAAGDEALVALSDELAGVLRPHDLFGRLGGDEFAVLLPGCNLAAALAVVERLKTAVAAH 308 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + P +T+S G A ++ ++ ++ AD AL AK+ GRNRV S N+ Sbjct: 309 R-----HPMGRLTVSVGAAPLRPRQELAHLLADADLALIEAKRRGRNRVCVSSGSAND 361 >gi|311108884|ref|YP_003981737.1| diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310763573|gb|ADP19022.1| diguanylate cyclase, GGDEF domain protein 18 [Achromobacter xylosoxidans A8] Length = 588 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 14/182 (7%) Query: 86 SGSILKELFISYNRISQ----LSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVF 133 + + +++L + +R+ Q ++ D L+GLLN AF L + + L+ + Sbjct: 399 NAAAVRKLELERDRLIQDLAIMAETDFLTGLLNRRAFEKRLEAALDDMRHDDGDGLTFIL 458 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 FD+D+FK IND GH GD+ + ++D F V R+GGEEFAA + Sbjct: 459 FDLDHFKSINDTHGHATGDEALKTVADLCRSTFRQSDVVARVGGEEFAALCRSRRPEPVR 518 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSG 251 +A +R I +QI+ +T S G+A + + + RAD+ LY AK +G Sbjct: 519 DVAERMRLNIARTQISAGGAARFSMTASFGVAHARSGDTAALENLSRRADELLYKAKLNG 578 Query: 252 RN 253 RN Sbjct: 579 RN 580 >gi|240138328|ref|YP_002962800.1| putative diguanylate cyclase with GGDEF motif; putative membrane protein [Methylobacterium extorquens AM1] gi|240008297|gb|ACS39523.1| putative diguanylate cyclase with GGDEF motif; putative membrane protein [Methylobacterium extorquens AM1] Length = 417 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 26/263 (9%) Query: 4 SLKDFLSIW--LCHEKNLESFSPHTFMIYFSIFFSIFIAT--VIFIANIFLFYIGLTPFY 59 +L L +W L ++ ++ + ++ F +F F+ T VI AN L +P Sbjct: 130 ALSTALCMWEILRTPASMRLWTQYIVLLGFGGYFIAFLLTIGVIHFANERL----ASPES 185 Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 G+ +L + V I + GY++ ++ E ++ ++S+L+ D L+GL N Sbjct: 186 GIYSLLFDLWCGVFIQV------GYLA--MVSER--AHLKLSRLADTDPLTGLANRRGLF 235 Query: 120 SSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 ++L + +I+ DID+FK IND +GH GD + +++L V V Sbjct: 236 AALSQRAGLSPSPPRCAILLADIDHFKAINDTYGHDGGDAALVGFAERLRGVMRKDDLVA 295 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEP 232 R GGEEF + AA +A LRK + +G ++ +T S G+A +E Sbjct: 296 RWGGEEFLVVLDQADATAAATVAERLRKSAAGQPFTV-NGAAVTVTASIGVAVVAAGEER 354 Query: 233 ISTIIYRADQALYVAKKSGRNRV 255 I + RAD ALY AK++GRNRV Sbjct: 355 IDAALSRADAALYAAKRAGRNRV 377 >gi|323702872|ref|ZP_08114530.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Desulfotomaculum nigrificans DSM 574] gi|323532130|gb|EGB22011.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Desulfotomaculum nigrificans DSM 574] Length = 808 Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 13/171 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152 + QLS D L+ N F L E K S++ DID FK IND FGH GD Sbjct: 643 LRQLSVTDVLTNAYNRRYFTQKLEEEIERAKRADRKFSLIILDIDRFKSINDRFGHNAGD 702 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +++ + + R GGEEF ++ + AA LA +LR+ + SQ++I Sbjct: 703 LVLKSIAELIKNRIRKIDTLARWGGEEFVILLPDTTVKNAARLAEELRESL--SQMDI-- 758 Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 P + H+T S G+A C + + T++ +AD +Y AK +GRN V ++ E Sbjct: 759 -PGVGHVTASFGVAGYCPGDMVDTLVNKADNMMYEAKAAGRNCVRYMNECE 808 >gi|206578784|ref|YP_002239380.1| putative membrane-bound diguanylate cyclase [Klebsiella pneumoniae 342] gi|288936230|ref|YP_003440289.1| diguanylate cyclase [Klebsiella variicola At-22] gi|290510714|ref|ZP_06550084.1| membrane-bound diguanylate cyclase [Klebsiella sp. 1_1_55] gi|206567842|gb|ACI09618.1| putative membrane-bound diguanylate cyclase [Klebsiella pneumoniae 342] gi|288890939|gb|ADC59257.1| diguanylate cyclase [Klebsiella variicola At-22] gi|289777430|gb|EFD85428.1| membrane-bound diguanylate cyclase [Klebsiella sp. 1_1_55] Length = 306 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 80/154 (51%), Gaps = 13/154 (8%) Query: 107 DCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 D L+ L N FI ++ + L ++ DID+FK+IND++GH VGD+V+ L QL + Sbjct: 151 DELTQLPNRRFFIDTIREKSGHALGLMILDIDFFKKINDSWGHLVGDEVLFSLGKQLAKL 210 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL----RKIIENSQINISSGPSIHITIS 221 + R+GGEEFA G SE E LA + R I+ N Q +S IS Sbjct: 211 TSEQVQPARIGGEEFAIIVDGLSEPELHALAQSILANARTILINHQTPLS--------IS 262 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G+ E T I + D+ALY AK +GR RV Sbjct: 263 IGVGTWRPGEAQETFIRKVDEALYKAKHNGRGRV 296 >gi|190575817|ref|YP_001973662.1| putative GGDEF signaling/response regulator protein [Stenotrophomonas maltophilia K279a] gi|190013739|emb|CAQ47374.1| putative GGDEF signaling/response regulator protein [Stenotrophomonas maltophilia K279a] Length = 526 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 17/200 (8%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNE------K 128 + +L G S + +L + QL+R D L+G+ N F + L S +N + Sbjct: 323 VVATLGFGLRSVLLQTDLLERQAALDQLARQDGLTGVANRREFDARLTSEWNRARRSGTE 382 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 L ++ DID+FK ND GHP GD+ + ++ L + G V R GGEEFA GS Sbjct: 383 LGLLLVDIDHFKAFNDQHGHPAGDRCLQAVAGVLKAIAGRGGDSVARYGGEEFAVIVPGS 442 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQAL 244 LA LR+ +E + + GP ++IS G+ H +++ ++ AD L Sbjct: 443 PLSGVLALAERLREAVE--ALPLPEGP---VSISVGVGY-LHPPALASADQLLADADAGL 496 Query: 245 YVAKKSGRNRVVCFSDIENN 264 Y AK++GRN+V+ + + ++ Sbjct: 497 YAAKRAGRNQVILHAHVLDD 516 >gi|152989885|ref|YP_001355607.1| hypothetical protein NIS_0135 [Nitratiruptor sp. SB155-2] gi|151421746|dbj|BAF69250.1| hypothetical protein [Nitratiruptor sp. SB155-2] Length = 622 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 11/160 (6%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ D L+ L N SA+ +S Y S++ DID+FK+IND +GH GDKV+ Sbjct: 462 AQTDVLTNLPNRSAYQMKLEEQMSLFERYQTVFSMLCIDIDHFKKINDTYGHKAGDKVLQ 521 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + + V R+GGEEF A + A A LR +I++ Q+ + S Sbjct: 522 EVAKIMRKTLRSSDTVFRIGGEEFVALLPETDLVAAKQAAQKLRTMIQD-QMKLG---SY 577 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++T+S G+ + + +I R D+ LY AK++GRN+VV Sbjct: 578 NVTVSIGVTQVNFDDTYDSIFMRCDKCLYHAKQNGRNQVV 617 >gi|74318041|ref|YP_315781.1| response regulator receiver modulated diguanylate cyclase [Thiobacillus denitrificans ATCC 25259] gi|74057536|gb|AAZ97976.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus denitrificans ATCC 25259] Length = 632 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 25/184 (13%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140 I EL ++ R++ + D L+GL N + + L + L+++ DID+FK Sbjct: 445 QIAAELAVANRRLANAALTDALTGLPNRRSAMDQLEQAWSAAARADTPLAVMVVDIDHFK 504 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--------AAAALGSSEQEA 192 IND GH +GDKV+ ++ L V R+GGEEF AAA+ S+E+ Sbjct: 505 HINDTHGHALGDKVLREAANALRASSRREDSVCRIGGEEFLVICPNTDLAAAMQSAER-- 562 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSG 251 LR + +I + IT S G+A R + I ++ ADQALY AK++G Sbjct: 563 ------LRATLSARRIAVGEAECT-ITASIGVAVREYDTADIDGLVSAADQALYAAKEAG 615 Query: 252 RNRV 255 RN+V Sbjct: 616 RNQV 619 >gi|127513928|ref|YP_001095125.1| diguanylate cyclase [Shewanella loihica PV-4] gi|126639223|gb|ABO24866.1| diguanylate cyclase [Shewanella loihica PV-4] Length = 585 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 95/198 (47%), Gaps = 16/198 (8%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSY 125 +SL+I IT+ Y S +I K R+ QL+ D L+ + N F S +Y Sbjct: 378 ISLLIAIITLLGFWAYKSWTIQK-------RLKQLAEYDALTHVFNRGHFTQVAQSALTY 430 Query: 126 NE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 E LS + FD+D FKQIND +GH +GD V+ ++ R+GGEEF Sbjct: 431 CESSEVDLSYILFDLDNFKQINDKYGHAIGDWVLKKVAKACQAQGRKNDIFARIGGEEFC 490 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240 A G Q A LA RK I ++G +T S GI + + + +I A Sbjct: 491 IALPGCDLQTAVKLAEACRKAIAGIDCG-ATGHEFEVTASFGITDTQMSGYKLERLINDA 549 Query: 241 DQALYVAKKSGRNRVVCF 258 D A+Y +K++GR+R+ F Sbjct: 550 DSAMYQSKETGRDRICIF 567 >gi|283785264|ref|YP_003365129.1| diguanylate cyclase YddV [Citrobacter rodentium ICC168] gi|282948718|emb|CBG88310.1| diguanylate cyclase YddV [Citrobacter rodentium ICC168] Length = 460 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 9/179 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDYFK 140 ++L+ELF +R +D L+ LLN + F + N LSI+ D+D FK Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTIFKREIAHANRAGTPLSILIIDVDKFK 338 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND +GH GD+++ +S + +V R GG+EF +++ + +A +R Sbjct: 339 EINDTWGHNTGDEILRRVSQAFYDNVRSSDYVFRYGGDEFIIVLTEATQADTLRIAERIR 398 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +E ++I G +I +++S G A +I AD+ALY AK+ GRNRV +S Sbjct: 399 LRVEKTKIKSPDGATIPLSLSIGAAMFNGHPDYERLIQIADEALYTAKRQGRNRVELWS 457 >gi|158338091|ref|YP_001519267.1| PAS sensor diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158308332|gb|ABW29949.1| PAS sensor diguanylate cyclase, putative [Acaryochloris marina MBIC11017] Length = 600 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 18/195 (9%) Query: 79 SLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128 L L Y + ++L ++L I+ + +L+ +D L+ + N F S L + Sbjct: 131 QLELQYKNTTLLALSEQLEIANRELERLATMDGLTRVYNRRQFDSVFEREWHRLCREEQP 190 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 LS++ D+D+FK ND +GH GD+ + ++ + + P V R GGEEF + Sbjct: 191 LSVILGDVDHFKAYNDAYGHQAGDQCLQQVAQAIARIAQRPADCVARYGGEEFVVLLPNT 250 Query: 188 SEQEAAILANDLRKIIENSQINI---SSGPSIHITISAGIAERCHKE--PISTIIYRADQ 242 A +A +R+ +E ++NI +S S HI++S G+A E P S++I ADQ Sbjct: 251 DLSGALHVAEAIREEVE--ELNIPHRNSSVSKHISLSLGVASLIPNEDIPASSLIQSADQ 308 Query: 243 ALYVAKKSGRNRVVC 257 ALY AK GRN+V Sbjct: 309 ALYTAKDLGRNQVTA 323 >gi|53716656|ref|YP_105660.1| GGDEF domain-containing protein [Burkholderia mallei ATCC 23344] gi|254173944|ref|ZP_04880607.1| GGDEF domain protein [Burkholderia mallei ATCC 10399] gi|254200460|ref|ZP_04906825.1| putative diguanylate cyclase [Burkholderia mallei FMH] gi|254204485|ref|ZP_04910838.1| putative diguanylate cyclase [Burkholderia mallei JHU] gi|52422626|gb|AAU46196.1| GGDEF domain protein [Burkholderia mallei ATCC 23344] gi|147748072|gb|EDK55147.1| putative diguanylate cyclase [Burkholderia mallei FMH] gi|147754071|gb|EDK61135.1| putative diguanylate cyclase [Burkholderia mallei JHU] gi|160694991|gb|EDP84961.1| GGDEF domain protein [Burkholderia mallei ATCC 10399] Length = 489 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 316 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 375 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I+ I+ ADQALY AK GRNRVV Sbjct: 434 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGRNRVV 484 >gi|291287174|ref|YP_003503990.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] gi|290884334|gb|ADD68034.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] Length = 313 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 9/165 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q+++ D L+ L NHS F L YN +I D+D+FK++ND +GH GD Sbjct: 143 LEQMAKKDGLTMLFNHSYFKDKLKDEMVRSERYNNCFTIAILDLDFFKRVNDQYGHVKGD 202 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ + R GGEEFA + +A ++ + +R+ + N+ I S Sbjct: 203 EVLKAFANIIKETVRNTDIAARYGGEEFAIIFTETDITDAVVVLDRIREKLNNT-IFSSE 261 Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +T SAG+ E + ++ AD+ALY++K GRNR Sbjct: 262 TVCFKVTFSAGVTEYSKSYRDVEYMVNIADKALYISKSEGRNRTT 306 >gi|218530043|ref|YP_002420859.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] gi|218522346|gb|ACK82931.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] Length = 417 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 127/263 (48%), Gaps = 26/263 (9%) Query: 4 SLKDFLSIW--LCHEKNLESFSPHTFMIYFSIFFSIFIAT--VIFIANIFLFYIGLTPFY 59 +L L +W L ++ ++ + ++ F +F F+ T VI AN L +P Sbjct: 130 ALSTALCMWEILRTPASMRLWTQYIVLLGFGGYFIAFLLTIGVIHFANERL----ASPES 185 Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 G+ +L + V I + GY++ ++ E ++ ++S+L+ D L+GL N Sbjct: 186 GIYSLLFDLWCGVFIQV------GYLA--MVSER--AHLKLSRLADTDPLTGLANRRGLF 235 Query: 120 SSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 ++L + +I+ DID+FK IND +GH GD + +++L V V Sbjct: 236 AALSQRAGLSPSPPRCAILLADIDHFKAINDTYGHDGGDAALVGFAERLRGVMRKDDLVA 295 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEP 232 R GGEEF + AA +A LRK + +G ++ +T S G+A +E Sbjct: 296 RWGGEEFLVVLDQADATAAATVAERLRKSAAGQPFTV-NGAAVTVTASIGVAVVAAGEER 354 Query: 233 ISTIIYRADQALYVAKKSGRNRV 255 I + RAD ALY AK++GRNRV Sbjct: 355 IDAALSRADAALYAAKRAGRNRV 377 >gi|152970532|ref|YP_001335641.1| hypothetical protein KPN_01980 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955381|gb|ABR77411.1| hypothetical protein KPN_01980 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 391 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 27/167 (16%) Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+ L N S F +L K LS++ D+D+FK+IND++GH GDKVI F + Sbjct: 232 DPLTRLYNRSFFYDTLNQQLAKVNAQHPLSVLISDLDHFKRINDSYGHVAGDKVIQFAAS 291 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L R+GGEEFA + + E+EA +A +R + + ++ +TI Sbjct: 292 VLESHSRVDDAAARIGGEEFALLLVNTGEKEAQAIAERIRLAVSAGESHLPE----RMTI 347 Query: 221 SAGI---------AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S G+ AE C + RAD+A+Y AK +GRN+V+ + Sbjct: 348 SMGVYTTYDNSVTAEAC--------VQRADEAMYEAKNNGRNQVIVW 386 >gi|115353263|ref|YP_775102.1| diguanylate cyclase [Burkholderia ambifaria AMMD] gi|115283251|gb|ABI88768.1| diguanylate cyclase [Burkholderia ambifaria AMMD] Length = 452 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 14/179 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 + LF ++ + + S D L+G N H+ F+ + E LS++ D+D+FK Sbjct: 275 QRLFEAHTMLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDHFKAY 333 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD + +++ L P V R GGEEFA + + A ++A + R+ Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARLVAEEARE 393 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257 + + + S P+ +++S G A E +ST ++ AD ALY AK GRNRVV Sbjct: 394 AVLRLDLAMPSSPAGRVSVSVGCATVSAAE-LSTPDALVEAADAALYRAKDGGRNRVVA 451 >gi|310827595|ref|YP_003959952.1| hypothetical protein ELI_2006 [Eubacterium limosum KIST612] gi|308739329|gb|ADO36989.1| hypothetical protein ELI_2006 [Eubacterium limosum KIST612] Length = 324 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 8/161 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKV 154 N + +L+++D L+GLLN + + + E+ + ++ DID FK+IND FGH GD V Sbjct: 161 NELRRLAQLDSLTGLLNRVSVEQEINTRLEQGTGGVLMMIDIDDFKEINDVFGHLAGDTV 220 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSG 213 + LSD++ FG +GR+GG+EF A +++ A +I+ ++I Sbjct: 221 LKVLSDRIRESFGGQSIMGRVGGDEFVVFAEKMADRAGIGQTAQQFCEIVTQPVMDI--- 277 Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253 P IT+S GI++ + S ++ ADQALY KK+ +N Sbjct: 278 PDCSITVSIGISQSPDNGSSYSALVRSADQALYARKKNSKN 318 >gi|238892956|ref|YP_002917690.1| putative transmembrane protein [Klebsiella pneumoniae NTUH-K2044] gi|238545272|dbj|BAH61623.1| putative transmembrane protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 348 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 22/264 (8%) Query: 11 IWLCH--EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68 +W H K + PH + ++ +FI T+ F NI F + P + I+ E Sbjct: 81 LWAWHVVTKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLACLIMAEG 140 Query: 69 ---------LSLVIISITISLLLGYISGS----ILKELFISYNRISQLSRIDCLSGLLNH 115 L I IT+ ++ S + ++ +L N ++ LS +D L+GL N Sbjct: 141 EQWLRMTYCFMLPIAGITLQNIIQKRSDAFTQGLMDKLMHERNTLNDLSMLDPLTGLYNR 200 Query: 116 SAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 + L + + ++ DID+FK ND++GH +GD+ + +S + + Sbjct: 201 RGLQNRLDTLLALDGDNHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRNAVRSRDI 260 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITISAGIAERCH 229 V R GGEEF SSE+ A A +R+ + + +I + + ++TIS G+ + Sbjct: 261 VARFGGEEFMVLLTNSSEETAWKTAERIRQRVYDLKIPHMFNESVATNVTISIGLTPLIN 320 Query: 230 KEPISTIIYRADQALYVAKKSGRN 253 + I + RAD ALY AK GRN Sbjct: 321 -DNIEQALARADGALYEAKNKGRN 343 >gi|307945479|ref|ZP_07660815.1| GGDEF family protein [Roseibium sp. TrichSKD4] gi|307771352|gb|EFO30577.1| GGDEF family protein [Roseibium sp. TrichSKD4] Length = 262 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 101/225 (44%), Gaps = 5/225 (2%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90 + + F I +I +A L L P LE S+ +I++ +S + + + Sbjct: 14 WDVLFWTTITVLIALATTGLIGWILLP---LEVFAAAAPSMFLIALFLSSCMSLFACRQI 70 Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHP 149 L +++ I L D L+G F + ++V D+D+FK IND FGHP Sbjct: 71 MHLQLAHKTIKLLHATDALTGTTTRRRFFEAQAETQAAPAVVMMVDVDHFKSINDRFGHP 130 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ ++ L+ +V R+G EEF ++A LA DL + + Sbjct: 131 VGDEVLVQIAGTLMENVRDRDWVVRMGWEEFLVFLPELDWRKAQELATDLCSDVARLRFE 190 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I I ++IS G+AE I I ADQA AK GRNR Sbjct: 191 IDEH-EIDVSISIGLAEHDAANTIDGAIQAADQAPLKAKADGRNR 234 >gi|261211344|ref|ZP_05925632.1| GGDEF family protein [Vibrio sp. RC341] gi|260839299|gb|EEX65925.1| GGDEF family protein [Vibrio sp. RC341] Length = 456 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 100/217 (46%), Gaps = 29/217 (13%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKEL---------FISYN-RISQLSRIDCLSGL 112 YI+VE I +LG ++ S L + F Y R+ ++ D L+G Sbjct: 248 YIIVEQKDEFNQDIWFKAMLGNLAISALVAIAVLGLAQMSFRGYQKRLEDMAVRDKLTGA 307 Query: 113 LNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV---IAFLSDQL 162 + F IS+ LS+ D+D+FKQ+NDN+GHPVGD V + + + Sbjct: 308 YSRQVFEELVEEAISNATKELHPLSLAVIDLDHFKQVNDNYGHPVGDLVLQRVVGICQRH 367 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + GT + R GGEEF QEA +R I +SS P +T+S Sbjct: 368 IEQVGT---LCRWGGEEFVVLLPDMPLQEAYQRMEQIRHDI----AVMSSKP--QVTVSI 418 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G+ E E + + RADQA+Y AK GRN+VV S Sbjct: 419 GVVEYSPNESLLQLFNRADQAMYTAKNEGRNKVVGLS 455 >gi|260777598|ref|ZP_05886491.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605611|gb|EEX31896.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 621 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 79/168 (47%), Gaps = 24/168 (14%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG---------SYNEKLSIVFFDIDYFKQINDNFGH 148 NR+ ++S D ++GL N F + S+ E DID+FK++ND GH Sbjct: 452 NRLREMSEKDSMTGLWNRRKFDQEMAAQCAKSKRYSHAEPTCFAIVDIDHFKRVNDRLGH 511 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---EN 205 GDK+I + L F+ R+GGEEFA + QEA I+ N LR + + Sbjct: 512 DEGDKIIKSVGTVLSDHLRETDFIARIGGEEFAIIMPHTRIQEAEIVTNRLRTSVSLQHD 571 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 QI +S G +T G E +K RAD ALY +K GRN Sbjct: 572 EQITVSVG----VTDMDGSVENTYK--------RADVALYESKSLGRN 607 >gi|260464198|ref|ZP_05812391.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] gi|259030001|gb|EEW31284.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] Length = 393 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D LSGLLN F + + +++V D+D+FK +ND GH GD+VIA + Sbjct: 220 DPLSGLLNRRGFEERAARLLETCARAKFPVALVLADLDHFKALNDVHGHAAGDRVIADFA 279 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L GT GR+GGEEFA S A + A +R + ++ P +T Sbjct: 280 AKLQAAAGTRGAAGRIGGEEFAVLLPLSDLASARLFAEAVRTLYSAGSVD-GLPPGTKVT 338 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A R E + ++ RAD+ALY AKK+GR+ V Sbjct: 339 ASFGVAARSGGEALEPLMRRADEALYKAKKNGRDSV 374 >gi|317048618|ref|YP_004116266.1| diguanylate cyclase [Pantoea sp. At-9b] gi|316950235|gb|ADU69710.1| diguanylate cyclase [Pantoea sp. At-9b] Length = 550 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 10/172 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R++ + D L+ LLN SAF LS++ D+D+FK++ND +GH Sbjct: 380 ERLTWRANYDGLTRLLNRSAFFEQFVAQAAHCQQLQRPLSVIQLDVDHFKKVNDTWGHHA 439 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + ++ + GR+GGEEF ++ EA+ +A +R + I + Sbjct: 440 GDQALIRVASVISHTLRKYDVAGRIGGEEFCIVLPETTLAEASAVAERIRARLAAKTILV 499 Query: 211 SSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ + +IT+SAG+ +E ++ +AD LY+AK +GRNR VC +D Sbjct: 500 NASTTFNITLSAGVTSSEEQGDYDAESLQAKADSRLYLAKTNGRNR-VCSAD 550 >gi|307154701|ref|YP_003890085.1| PAS/PAC and GAF sensors-containing diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306984929|gb|ADN16810.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC 7822] Length = 679 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 16/163 (9%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +S+ N L ++ DID+FK+ ND +GH GD VI + Sbjct: 506 DPLTGLFNRRYLEASMIRELHRATRNNNSLGVIILDIDHFKRFNDTWGHHAGDAVIKVMG 565 Query: 160 DQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L R GGEEF A+L +E+ A L +++ + N Q+ S Sbjct: 566 KLLQENVRESDIACRYGGEEFIIILPDASLEDTEKRAKQLQTNIKTL--NVQVRDQKLES 623 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IT+S G+A H + +++RAD+ALY AK+ GR+R+VC Sbjct: 624 --ITVSMGVASFPKHGDSYELLLHRADEALYQAKQQGRDRIVC 664 >gi|121535140|ref|ZP_01666956.1| diguanylate cyclase [Thermosinus carboxydivorans Nor1] gi|121306249|gb|EAX47175.1| diguanylate cyclase [Thermosinus carboxydivorans Nor1] Length = 794 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 88/177 (49%), Gaps = 20/177 (11%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 YN++ ++ D L+GL N F L + LS++ FD+D FK ND +GH Sbjct: 615 YNQVKAMALSDGLTGLANRRNFDMFLKAELRRSFTLKRPLSLIMFDLDKFKTYNDTYGHL 674 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDK++A + + L + R GGEEF+ + EA +A LR+I+E + Sbjct: 675 TGDKLLAQIGEILRHNVRSIDLPARYGGEEFSIILPECTNAEALAIAEKLRQIVEETHFP 734 Query: 210 ISSGP-SIHITISAGIAERCHKEPIST---------IIYRADQALYVAKKSGRNRVV 256 + G + IT S G+A +P T +I AD+ALY AK+ GRNRVV Sbjct: 735 DNLGAFTARITASLGVATY---DPAITSGGVPDMEDLIAWADKALYQAKQQGRNRVV 788 >gi|304408640|ref|ZP_07390261.1| diguanylate cyclase [Shewanella baltica OS183] gi|307305469|ref|ZP_07585217.1| diguanylate cyclase [Shewanella baltica BA175] gi|304352461|gb|EFM16858.1| diguanylate cyclase [Shewanella baltica OS183] gi|306911772|gb|EFN42197.1| diguanylate cyclase [Shewanella baltica BA175] Length = 325 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 10/162 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 L+ D L+G LN + L Y ++ S++ DID+FK +NDNFGH +GD++ Sbjct: 164 HLANTDELTGALNRKPLKTKLELSVYEYQQQQIPASLLLIDIDFFKMVNDNFGHIMGDQL 223 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + S + + R GGEEF + + AAI+A DLR+ IE Sbjct: 224 LNKFSQHIQKKIRKDDLLFRFGGEEFLILLPNTQFESAAIVAEDLRRSIEEQHF---LDQ 280 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T S G+A+ + + T + D LY AK +GRN VV Sbjct: 281 HTQVTCSIGVADLRQADTLDTWLKTCDNLLYTAKNAGRNCVV 322 >gi|289677142|ref|ZP_06498032.1| GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 308 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 Y +Q + D L+ N A SL + + LS++ DID+FK++ND +GH Sbjct: 140 YRIATQTALRDPLTSTGNRIAMDQSLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHH 199 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ L V R GGEEF + A ++ L + + N + Sbjct: 200 TGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGADSAELIGQRLCQAVRNLEFR 259 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S P++ +T+S G + E +++ RAD ALYVAK+ GRNR+ S Sbjct: 260 ELS-PALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRIAMAS 308 >gi|256823744|ref|YP_003147707.1| diguanylate cyclase with TPR repeats [Kangiella koreensis DSM 16069] gi|256797283|gb|ACV27939.1| diguanylate cyclase with TPR repeats [Kangiella koreensis DSM 16069] Length = 624 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 9/164 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q++ D L+ + N +L G + S++ FDID+FK IND FGH +GD+V Sbjct: 459 QMAFTDNLTKMPNRRHVFRTLELQHKASGPGRKTYSVILFDIDFFKSINDRFGHNIGDRV 518 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I D V +GR+GGEEF + + A +A LR+ E P Sbjct: 519 IQSTRDICEAVLRETDTIGRIGGEEFLILLPDTELKAAYNIAERLREYFETYNFE-DIAP 577 Query: 215 SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +T S G+ E E + ++ RAD+ LY AK GRN+V+ Sbjct: 578 GLTVTSSFGVTEYLPEDETLDLVVNRADRLLYKAKNEGRNQVMA 621 >gi|170724153|ref|YP_001751841.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida W619] gi|169762156|gb|ACA75472.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida W619] Length = 328 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 78/130 (60%), Gaps = 4/130 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FKQIND++GH GD+V+ ++D V GR+GGEEFAA G + Sbjct: 199 LAFLLLDIDDFKQINDSYGHQEGDQVLQRIADSGKAVLRRGDLFGRIGGEEFAAVFPGCN 258 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYV 246 Q A +A L++ I+ +++ S G ++ +T+S G+ + + ++ RAD A+Y Sbjct: 259 AQVAEQIAERLQREIQ--RLSFSHGEQVYGVTVSQGLTGLTAEDDSLDSLFARADAAMYR 316 Query: 247 AKKSGRNRVV 256 AK+ G+N++V Sbjct: 317 AKRQGKNQIV 326 >gi|88859519|ref|ZP_01134159.1| Putative diguanylate cyclase (GGDEF domain) [Pseudoalteromonas tunicata D2] gi|88818536|gb|EAR28351.1| Putative diguanylate cyclase (GGDEF domain) [Pseudoalteromonas tunicata D2] Length = 394 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 9/171 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L IS ++ +L+ D L+ +LN +F +S +S + D+D FK++ND Sbjct: 223 LQISNEKLKELASKDSLTQVLNRGSFFEMAQQLLSLAQRQKSTVSFILMDLDLFKEVNDT 282 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH GDKV+ + + + V R+GGEEFA + +A +AN +R+ I + Sbjct: 283 FGHFAGDKVLIHCTQTIQSLLRKSDLVARVGGEEFAVFLPDTGLDDAYRIANTIRQTIAD 342 Query: 206 SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S + I + +I T+S G+ E I + R D LY AK GR+RV Sbjct: 343 STLEIDN-KTIAYTLSIGVVCSEPDDELIDELFKRVDLKLYGAKDKGRDRV 392 >gi|330446061|ref|ZP_08309713.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490252|dbj|GAA04210.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 450 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 6/166 (3%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 YN+I + D ++ L + + ++ + ++ DID+FK IND +GH VGD VI Sbjct: 289 YNKIFKQYYFDNMTSFLRRDHYEQKIQKFSN-MDVIICDIDHFKSINDTYGHDVGDIVIE 347 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ ++ R GGEEF G + + A +RK + + IN I Sbjct: 348 QVAKKIRNCIRKKDIAIRWGGEEFVIIFSGLNGEAIKNKAEQIRKAVCHEPIN-----QI 402 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++T+S G A + E I + RAD+ALY++K SGRN+V S+++ Sbjct: 403 NVTLSCGCANQHDGEKIIDTLERADKALYLSKSSGRNQVTYHSEMK 448 >gi|152997862|ref|YP_001342697.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150838786|gb|ABR72762.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 426 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 9/173 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143 ++L I ++ L+ D L+ +LN +F + E K S + D+D+FK+IN Sbjct: 253 EDLQILNEKLKYLATRDSLTDVLNRGSFFETAQQLLELSQRQKSKASFILMDLDFFKRIN 312 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GDKV+ + L +GR+GGEEFA + A LA+ +R+ I Sbjct: 313 DTYGHFIGDKVLIHFTQTLQGFLRKSDLLGRVGGEEFAIFLPDTGLDAACQLADKIRQTI 372 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 ++ + + G ++ T+S G+ ++ I + R D LY AK GR+RV Sbjct: 373 SDAALEV-EGKTVTYTVSLGVESSGPEDQLIDELFKRVDLKLYGAKDKGRDRV 424 >gi|77361379|ref|YP_340954.1| hypothetical protein PSHAa2463 [Pseudoalteromonas haloplanktis TAC125] gi|76876290|emb|CAI87512.1| putative membrane protein [Pseudoalteromonas haloplanktis TAC125] Length = 325 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 18/172 (10%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+G LN A IS YN + F D+D+FK++ND FGH GD Sbjct: 161 LAELNSTDPLTGALNRRALNDDTLAAISRAERYNSTYLLAFLDLDFFKKVNDEFGHAEGD 220 Query: 153 KVIAFLSDQLVVVFGTPMF----VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +V+ QLV + + + + R GGEEF +E N LR+ I+N ++ Sbjct: 221 RVL----KQLVSITNSHIRESDKLYRFGGEEFVLIIPEIPPKEQVSFINKLRETIKN-EL 275 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +G S +T+S G+A +++ RAD A+Y AKK GR+ V D Sbjct: 276 KTPAGNS--VTVSFGVAAWVPGTTVASWFKRADDAMYQAKKQGRDCAVFSKD 325 >gi|251790367|ref|YP_003005088.1| diguanylate cyclase [Dickeya zeae Ech1591] gi|247538988|gb|ACT07609.1| diguanylate cyclase [Dickeya zeae Ech1591] Length = 519 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 33/223 (14%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR-----------------ID 107 L EN+ ++I+I + L + + G +LK++ ++ +SR ID Sbjct: 297 LTENMPAMVINIMVLLAMFFSGGFVLKQVRLTVRNKEAISRLHQEESNKNKVLQKLALID 356 Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+ L N F ++ LS++ D+D+FK+ ND +GH +GD+ + L Sbjct: 357 PLTKLANRRRFDLYLEQSLARARDEGSPLSLIMLDVDFFKRYNDTYGHVLGDRCLTQLGG 416 Query: 161 QL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI----LANDLRKIIENSQINISSGPS 215 L V R GGEEFA G + ++AA+ + +D+R+ + ++ P Sbjct: 417 VLSAVSLPDGALTARYGGEEFAIILPGMNGEQAAVYGERVVSDVRRCALPHEASLL--PE 474 Query: 216 IHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+ P I + ADQALY+AKK GR+R V Sbjct: 475 QVVTVSVGVYSHSSDNPCDIQRLKEGADQALYLAKKKGRDRCV 517 >gi|90019727|ref|YP_525554.1| hypothetical protein Sde_0078 [Saccharophagus degradans 2-40] gi|89949327|gb|ABD79342.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 565 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N A+ + Y L++ D+D+FK+IND FGH GDKV+ ++ Sbjct: 407 DPLTSLPNREAYNERAFHELHRFKRYGHPLTLAVCDLDHFKKINDTFGHQAGDKVLKLVA 466 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + FV R GGEEF + ++A + + +R I + P + IT Sbjct: 467 QVVSTRLRNVDFVARYGGEEFVLVMPETDAEQAKTVLDKMRAAIAKTPFRFKDSP-VTIT 525 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S GI + ++ + + RAD+ALY AK +GRN+ V Sbjct: 526 MSFGIVQFRGEDSVESAFARADKALYEAKANGRNQCV 562 >gi|309774556|ref|ZP_07669582.1| putative HAMP domain/GAF domain/GGDEF domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917671|gb|EFP63385.1| putative HAMP domain/GAF domain/GGDEF domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 551 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 83/166 (50%), Gaps = 22/166 (13%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S D LSG+ N SA + S + + DID FKQIND FGH GD+VI Sbjct: 392 SSYDYLSGIYNRSALMQYGEDMLQSARRQAHSIGALMMDIDDFKQINDTFGHMQGDEVIR 451 Query: 157 FLSDQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 Q+ + + R GGEEF S+QE LA D+R E +I+ + Sbjct: 452 ----QVTAIMKQKQRHGIIARFGGEEFILLIDQLSKQELYELAEDIRYACETCEISFENA 507 Query: 214 PSIHITISAGIAERCHKE-PIST---IIYRADQALYVAKKSGRNRV 255 SIH TIS G C++E P ST + ADQ LY+AK++G+N V Sbjct: 508 -SIHFTISIGC---CYQEQPASTLKELFNEADQRLYIAKRNGKNYV 549 >gi|238917938|ref|YP_002931455.1| hypothetical protein EUBELI_02026 [Eubacterium eligens ATCC 27750] gi|238873298|gb|ACR73008.1| Hypothetical protein EUBELI_02026 [Eubacterium eligens ATCC 27750] Length = 342 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 107/202 (52%), Gaps = 7/202 (3%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P Y + ++ ++ L +I++S L Y + I+ + S +++ ++ ID L+ L + Sbjct: 145 PLYEINKTII-SVMLACNAISVSAFLIYYTKVIVDLVIESEKKLNSIANIDLLTDLYSRR 203 Query: 117 AFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 I+ L Y+ ++ + D+D FK+IND +GH GD V+ F++ ++ + + + R Sbjct: 204 YMINYLEEYDADDEGWLAMADVDDFKKINDTYGHNCGDYVLNFIAQKMKNICSNCV-ISR 262 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 GGEEF G+ + +L LR+ IENS+ I I+I+++ G+A+R I Sbjct: 263 WGGEEFLIHN-GTHDSTHEVLEK-LRREIENSEC-IYKQQKINISLTIGVAQRNADGDIE 319 Query: 235 TIIYRADQALYVAKKSGRNRVV 256 I AD LY K +G+N VV Sbjct: 320 EWIKSADDRLYYGKNNGKNMVV 341 >gi|27380975|ref|NP_772504.1| hypothetical protein bll5864 [Bradyrhizobium japonicum USDA 110] gi|27354141|dbj|BAC51129.1| bll5864 [Bradyrhizobium japonicum USDA 110] Length = 799 Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 22/168 (13%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +IS ++R D L+GL N F L GS ++L+++ D+D+FK IND+ GHP+G Sbjct: 368 KISHMARHDALTGLPNRVLFHEQLEQGLRRTGS-GDQLAVLCLDLDHFKDINDSLGHPIG 426 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKI------IE 204 D ++ + +L G V RLGG+EFA +G SE+ AA LA L ++ I+ Sbjct: 427 DALLKEVGRRLKATVGESDTVARLGGDEFAVVQIGRSEEAAARCLAGRLVEVISAPYEID 486 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 + QI I G SI I++S + ++ AD ALY AK GR Sbjct: 487 DHQIVI--GVSIGISLSPQDGSNADE-----LLKNADLALYRAKADGR 527 >gi|317493110|ref|ZP_07951534.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919232|gb|EFV40567.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 395 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 5/161 (3%) Query: 99 RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+ ++ D L+G N + F+ E +++ D+DYFK+ ND++GH GD + Sbjct: 232 RLDVMAHQDVLTGTANRRSMENFLDDALLQAEPFALLMLDVDYFKRYNDHYGHQAGDACL 291 Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSG 213 ++D + TP V R GGEEF SS +A +A ++ + E S + +S Sbjct: 292 VKVADIVKTSVRTPADLVARYGGEEFVIVLPASSLDDAVRVAERIQTNLREISLPHAASE 351 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 S +T+S GI + II RAD+ALY AK+ GRNR Sbjct: 352 VSEMVTVSMGITLSKDGDSAYGIIARADEALYRAKQQGRNR 392 >gi|297539182|ref|YP_003674951.1| diguanylate cyclase [Methylotenera sp. 301] gi|297258529|gb|ADI30374.1| diguanylate cyclase [Methylotenera sp. 301] Length = 413 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 101/184 (54%), Gaps = 15/184 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYF 139 ++LK+LF S +S+L+ D L+GL N AF ++ S ++I+F D+DYF Sbjct: 226 NLLKQLFESTTVLSELAYYDALTGLPNRRLLDDRAAQAFKAAKRS-KHMVAIMFLDLDYF 284 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198 K +ND++GH VGD+++ ++ +L + T V R+GG+EF EQ+A + A Sbjct: 285 KAVNDDYGHEVGDQLLVSVAGRLKELLRTDDTVARIGGDEFVILLPKVDDEQQATVAAEK 344 Query: 199 LRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + K + ++ G + I S G+A + P + ++ AD+A+Y AK+ GRN V Sbjct: 345 IIKAL--TKPFEVEGKMLEIGGSLGVAIYSKSGATP-ANLLKCADEAMYSAKRLGRNMFV 401 Query: 257 CFSD 260 ++D Sbjct: 402 VYAD 405 >gi|296534717|ref|ZP_06897101.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957] gi|296264955|gb|EFH11196.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957] Length = 507 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 99/217 (45%), Gaps = 16/217 (7%) Query: 56 TPFYGL--------EYILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRI 106 PF GL I+V S V + LLGY + E RI+ ++R Sbjct: 107 APFSGLLNRNRHADGRIVVLETSGVPLLAEDGALLGYRGVDRDVTEREARTARIAWMARH 166 Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N F S L + E ++ D+DYFK++ND GH GD ++ ++++L Sbjct: 167 DSLTGLANRMEFQSRLEDRLARGEPAGLLLLDLDYFKEVNDQLGHASGDVLLRQVAERLT 226 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + RLGG+EFAA EQ A+ + E Q++ G + +S G Sbjct: 227 GLLPEGSLGARLGGDEFAALLAAGPEQAQAVAQRLAAALCEPYQLD---GHRAVVGVSCG 283 Query: 224 IA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +A H +S ++ AD ALY AK+ GR V + Sbjct: 284 LALAPRHAGSVSALLRCADLALYQAKQEGRGHVCLYG 320 >gi|192359905|ref|YP_001983808.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686070|gb|ACE83748.1| GGDEF domain protein [Cellvibrio japonicus Ueda107] Length = 547 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 82/174 (47%), Gaps = 15/174 (8%) Query: 99 RISQLSRI---DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 R QLS D L+GLL HS +S E LS+V D+D+FK IND++GH Sbjct: 373 RCRQLSDALDRDSLTGLLKHSRIKELVDLELSRAQRSGEPLSLVMLDLDHFKHINDSYGH 432 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDKVI ++ L +GR GGEEF EA L + +R+ + Sbjct: 433 SAGDKVIRAMAHLLRQRLRKTDSLGRYGGEEFLIVLPRCGPDEAFKLVDKVRRHFQEIPF 492 Query: 209 NISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259 G +T SAGIA C T++ AD+ALY AK GR+RV + Sbjct: 493 Q-HQGCHFRVTTSAGIAS-CGASGAMAADTLLQAADEALYEAKHQGRDRVCIYQ 544 >gi|167567078|ref|ZP_02359994.1| GGDEF domain protein [Burkholderia oklahomensis EO147] gi|167571819|ref|ZP_02364693.1| GGDEF domain protein [Burkholderia oklahomensis C6786] Length = 311 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + + D L+G+ N F + L Y LS++ FD+D+FK IND FGH VG Sbjct: 144 KLQEYANRDGLTGIANRRFFEARLRDEFERWQRYGGNLSVLLFDLDHFKAINDRFGHVVG 203 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ ++ V GR GGEEFA +S EA +A +R+ I N+ I + Sbjct: 204 DNVLRVMARRVADVVRLQDTFGRFGGEEFALLLPCTSLDEAMHVAEKIRQTIGNTPIE-A 262 Query: 212 SGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258 G + +T S G A T++ AD ALY AK+ GRN V F Sbjct: 263 EGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310 >gi|154253256|ref|YP_001414080.1| response regulator receiver modulated diguanylate cyclase [Parvibaculum lavamentivorans DS-1] gi|154157206|gb|ABS64423.1| response regulator receiver modulated diguanylate cyclase [Parvibaculum lavamentivorans DS-1] Length = 457 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 9/165 (5%) Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N + + + + ++++ FDIDYFK +ND GH GD+V Sbjct: 290 ELAITDGLTGLYNRRYMEGHLATLVDDAANTGKPVALLIFDIDYFKAVNDTHGHQAGDEV 349 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 + +D++ RLGGEEF + A +A LR+ + + +G Sbjct: 350 LKEFADRISANVRGIDLACRLGGEEFVVVMPDTDLTYAMTVAERLRQGVALRPFKLDETG 409 Query: 214 PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ +T+S GIA + + ++ RADQ LY AK+ GRNRVV Sbjct: 410 RTLDVTVSIGIAVTEGPNDTAAKLLGRADQGLYRAKRDGRNRVVA 454 >gi|290509423|ref|ZP_06548794.1| sensory box-containing diguanylate cyclase [Klebsiella sp. 1_1_55] gi|289778817|gb|EFD86814.1| sensory box-containing diguanylate cyclase [Klebsiella sp. 1_1_55] Length = 418 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 12/161 (7%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GLLN F + + + ++ DID+FK IND GH GD+V+ +S L Sbjct: 256 DPLTGLLNRREFYRLVEAPSFIAQGFCLLLIDIDHFKSINDIHGHQKGDEVLLVISRILE 315 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + R GGEEF S A ILA +R+ + Q ++ +T+S G Sbjct: 316 TSVDREDKIYRWGGEEFLLFLPHSPIARALILAEGIRQAVSEYQ-------TLSVTVSIG 368 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCFSDIE 262 +AE E I + R D+ALYVAK GRNRV + F ++E Sbjct: 369 VAEHHDGEAIDQLFSRVDKALYVAKNGGRNRVSRLPFENVE 409 >gi|289577851|ref|YP_003476478.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Thermoanaerobacter italicus Ab9] gi|289527564|gb|ADD01916.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Thermoanaerobacter italicus Ab9] Length = 669 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 11/154 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N F+ L E++ S++ FD+D+FK +ND FGH VGD V+ ++ Sbjct: 515 DPLTNIYNRRFFMQMLEQEIERVKRNKKPFSLIMFDLDHFKNVNDRFGHAVGDMVLKSVA 574 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D + + R GGEEF +S A LA LRK I ++++ +T Sbjct: 575 DTVKGRIRKTDYFARWGGEEFIILLPETSLNNAVDLAEGLRKKISETELDGIG----KVT 630 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 S G+ E + I TI+ RAD LY AK++GRN Sbjct: 631 ASFGVTEYRDTDTIDTILLRADNMLYEAKRAGRN 664 >gi|254784735|ref|YP_003072163.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901] gi|237686237|gb|ACR13501.1| GGDEF domain protein [Teredinibacter turnerae T7901] Length = 436 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 12/173 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSIVFFDIDYFK 140 SI K L + + L++ D L+GLLN ++ L ++ ++ V D+DYFK Sbjct: 263 SINKLLNLQNKQFEDLAKTDQLTGLLNRIGIREPLLAGLNAWKHTQTPMAFVLIDLDYFK 322 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND +GH VGD+V+ ++ + +V R GGEEF +S +A +A LR Sbjct: 323 MVNDRYGHDVGDQVLRKSAELVRSNVRESDYVARWGGEEFLLMLPDTSLTQAEQIAEMLR 382 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +E +QI+ ++ IT S G+A ++ + + AD ALY AK++GRN Sbjct: 383 SKLETAQIHTATT----ITASFGVAA-LKEDNLDNLFKAADDALYKAKQNGRN 430 >gi|254516869|ref|ZP_05128927.1| diguanylate cyclase [gamma proteobacterium NOR5-3] gi|219674374|gb|EED30742.1| diguanylate cyclase [gamma proteobacterium NOR5-3] Length = 399 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 14/190 (7%) Query: 82 LGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131 LG I+ S+ +L + +++ L+ ID L+GL N +L + LS+ Sbjct: 209 LGQITNSLRDRNLQLQEARRQLTDLANIDELTGLGNRRLINQTLREEVNRARRSHGWLSV 268 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQ 190 + D+D+FK+ ND +GHP GD+V+ + D + V GR GGEEF G+ Sbjct: 269 ILIDVDFFKKYNDTYGHPAGDEVLRRIGDIMQRATARAGEVAGRYGGEEFILVLPGARAP 328 Query: 191 EAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVA 247 EA A L+ ++ I + +S S I+IS G+ E + ++ RAD ALY A Sbjct: 329 EALKTAERLKLLVHEENIPHGASEVSDRISISQGVLSIMPDEEVDPGVLVDRADAALYEA 388 Query: 248 KKSGRNRVVC 257 K+ GRN++ Sbjct: 389 KREGRNKIAV 398 >gi|206578826|ref|YP_002240676.1| diguanylate cyclase [Klebsiella pneumoniae 342] gi|288937375|ref|YP_003441434.1| diguanylate cyclase [Klebsiella variicola At-22] gi|206567884|gb|ACI09660.1| diguanylate cyclase [Klebsiella pneumoniae 342] gi|288892084|gb|ADC60402.1| diguanylate cyclase [Klebsiella variicola At-22] Length = 464 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 8/173 (4%) Query: 89 ILKELFISYNRISQLSR-IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140 I +L + ++ +SQ+ D L+ LLN L Y+ L++ DID+FK Sbjct: 283 ISSQLGVLFSSLSQMQNGKDALTSLLNRRYLPVVLKHEVTLAIEYDLPLTVAIIDIDFFK 342 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND +GH VGD+ I ++D L + ++ R GGEEF + + EA L LR Sbjct: 343 EINDKWGHMVGDRAIKHVADLLSDNIRSSDYLFRYGGEEFLLVLVETRAAEAFPLLERLR 402 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 K I N+ I IT S G A + ++ AD ALY AK+ GRN Sbjct: 403 KKIGQLAFNVGGDTQIPITASIGFAAHTGHPDYNLLLRDADNALYAAKREGRN 455 >gi|332306393|ref|YP_004434244.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173722|gb|AEE22976.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 350 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 9/176 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF------ISSLGS-YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N +S+L + +N L++V FD+D FK IND GH VG Sbjct: 174 RLLSLAGTDPLTGLANRMKLNEGFQQLSALATRHNAPLTLVLFDLDLFKTINDVHGHSVG 233 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + +++ L + R GGEEFA + + +E LRK + + + + Sbjct: 234 DDALRHVANFLQTNTRKTDLLARFGGEEFALLMVATDLEEGYGQIEALRKRLMITPFS-T 292 Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 + I IT+SAG++ C + ++ +I +AD+ LY AK++GRN+V+ N Sbjct: 293 AKCDIQITLSAGLSTYGCDGKSLNQLIAKADKRLYHAKENGRNQVIAHDPDTNQKA 348 >gi|317406315|gb|EFV86552.1| signaling/response regulator protein [Achromobacter xylosoxidans C54] Length = 351 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 ++L S + +L+ D L+GL N F L + ++S++ D+D+FK N Sbjct: 157 QQLLESNMELRRLTNSDGLTGLGNRRYFDEYLNAEWLRARRDGREISMLMIDVDHFKSYN 216 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD+ + +++ + R GGEEFA G+ A + A LR+ Sbjct: 217 DTYGHIAGDEALKRVANTIFASCDRSTDLAARFGGEEFALVLPGTPAGSARLAAEKLRRA 276 Query: 203 IENSQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +E QI + GP + ++I A +P + +I AD+ LY AK+ GRNRVV Sbjct: 277 VEAMQIPQKDNGGGPWLTVSIGTATAVPVVDQPCTDLIQIADRGLYQAKRQGRNRVV 333 >gi|222149934|ref|YP_002550891.1| two component response regulator [Agrobacterium vitis S4] gi|221736916|gb|ACM37879.1| two component response regulator [Agrobacterium vitis S4] Length = 296 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 19/242 (7%) Query: 32 SIFFSIFIATVIFIANIFL-FYIGLTPFYGLEYILV---ENLSLVIISITISLLLGYISG 87 SI + I+T+ A L + + P L + + + + V I++ +G ++ Sbjct: 49 SILLVLLISTLAGTAGCLLSLWRIIQPLRQLNHSIARYRQEGAPVTIAVKTKDEIGTVAQ 108 Query: 88 SI---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDI 136 ++ + EL S ++ + D L+GL N FI + G+ + + ++ FD+ Sbjct: 109 AVSALVTELDCSLKTLTLQANTDPLTGLANRR-FILARGTEALDETRRSGDPMCLLLFDL 167 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK IND FGH GDK + + + GR+GGEEF G++ +A +A Sbjct: 168 DHFKGINDAFGHETGDKALIAAAQTIRSNLRPNDLAGRIGGEEFCVLLPGTNLVQAQAIA 227 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255 LR +EN I + IT S G+A+ H + D ALY AK+ GRNR+ Sbjct: 228 ERLRTCLEN--ICLEPLAPGRITASFGLAQSADHFSTFQKFMAATDMALYRAKQHGRNRI 285 Query: 256 VC 257 C Sbjct: 286 HC 287 >gi|188580802|ref|YP_001924247.1| diguanylate cyclase [Methylobacterium populi BJ001] gi|179344300|gb|ACB79712.1| diguanylate cyclase [Methylobacterium populi BJ001] Length = 416 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 7/163 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDK 153 ++S+L+ D L+GL N +++G + + +I+ DID+FK IND +GH GD Sbjct: 215 KLSRLAETDPLTGLANRRGLFTAIGRRSGPGGALRCAILLADIDHFKSINDTYGHDGGDA 274 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + +++L V + R GGEEF + A +A LR+ ++ +G Sbjct: 275 ALIGFAERLRSVMRKDDIIARWGGEEFLVVLDQADAAAATAVAERLRRTAAGQPFSV-NG 333 Query: 214 PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ +T S G++ +E I + RAD ALY AKK GRNRV Sbjct: 334 AALTVTASIGVSIVAAGEERIDAALSRADAALYAAKKGGRNRV 376 >gi|152976454|ref|YP_001375971.1| diguanylate cyclase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025206|gb|ABS22976.1| diguanylate cyclase [Bacillus cytotoxicus NVH 391-98] Length = 431 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F S +K++++FFDID FK++ND +GH Sbjct: 262 YQEQERLATIDTLTEIYNRLKFQQILEEVWKSAQRNRQKIALIFFDIDDFKKVNDTYGHD 321 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + + R GGEEF ++E+EA +A LR IE Q + Sbjct: 322 FGDLALIQLAELVKTKIDSKYTFARWGGEEFVILVTDTTEKEAFQVAESLRFFIETKQFS 381 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S +T S G+A +I RAD ALY AK++G+N+V Sbjct: 382 SISK----LTASFGVALYEQGITKEELIQRADIALYEAKQNGKNQV 423 >gi|307592366|ref|YP_003899957.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306986011|gb|ADN17891.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 813 Score = 85.5 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 1/131 (0%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + + D+D+FK++ND +GH GD V+++ L F + +GR GGEEF +G Sbjct: 674 QPFCLAILDLDHFKRVNDQYGHETGDLVLSYFGQLLNKSFRSQDIIGRWGGEEFVVGMIG 733 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245 ++ E + ++ + + N ++G S +T S GIA+ R + + + ADQALY Sbjct: 734 MTKLEGSKRLENILEKLNNYLFVAANGTSFRVTFSGGIAQLRENGNELQMLYTAADQALY 793 Query: 246 VAKKSGRNRVV 256 AK++GR R++ Sbjct: 794 QAKEAGRRRII 804 >gi|145298274|ref|YP_001141115.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851046|gb|ABO89367.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 379 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 12/171 (7%) Query: 98 NRISQLSR---IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147 N + QL R D L+G++N + L + +++ D+D FK+IND FG Sbjct: 191 NMLLQLYRESTTDELTGMMNRRLLMKQLDKARVTMDHKHSPFAVMLLDLDRFKRINDTFG 250 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENS 206 H GD V+ ++ L M +GR GGEEFA E +A +A LR +E Sbjct: 251 HLAGDAVLKEVAATLAEQLEPGMVLGRYGGEEFAILLPRCGELAQAKRVAERLRVAVEAR 310 Query: 207 QI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +S + +T+S G+ E + ++ RAD+ LY+AK +GRN VV Sbjct: 311 LVKSPTSDELLEVTVSIGLTLAQRGESVEDLLNRADECLYMAKMAGRNCVV 361 >gi|167033489|ref|YP_001668720.1| diguanylate cyclase [Pseudomonas putida GB-1] gi|166859977|gb|ABY98384.1| diguanylate cyclase [Pseudomonas putida GB-1] Length = 363 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 118/228 (51%), Gaps = 22/228 (9%) Query: 44 FIANIFLFYIGLTPFY--GLEYILVENLSLVIISITISLLLGY----ISGSILKELFISY 97 F + + + ++ L PFY +E +E LV ++ +S L+ Y + L ++S Sbjct: 139 FFSAMVITWVMLNPFYHTRIEPDALEGAMLVSYAVFLSGLITYSYLQTRKAKLHNFYLSR 198 Query: 98 NRISQLSRIDCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + Q + +D L+ + N +F++ L + + L++V DID FK++ND FGH +G Sbjct: 199 VLLEQ-AYVDALTEIPNRRSFMAKTEQQLKLATPGQYLAMV--DIDNFKKVNDRFGHDIG 255 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++ + F RLGGEEFA G +Q A + ++ + + Sbjct: 256 DEVLRRVALHIKAAMVDSEF-ARLGGEEFAIFLEGLDQQGA---EQQMEALVRRVREDAG 311 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + P +TIS G+A+ + ++ + +ADQALY AK +G++R V ++ Sbjct: 312 THP---VTISIGLAQVSAGDTLTMALIKADQALYEAKHTGKDRFVLWT 356 >gi|159898911|ref|YP_001545158.1| TPR repeat-containing diguanylate cyclase and serine/threonine protein kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159891950|gb|ABX05030.1| diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Herpetosiphon aurantiacus ATCC 23779] Length = 600 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 11/168 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++++ ++ D L+ +LN + + + + + FDID+FK IND++GH G Sbjct: 424 QLAEWAKTDSLTEILNRRGLYEQIDLALQHQQTDAQGWAWIMFDIDFFKAINDSYGHDSG 483 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++ + +V GR GGEEF +S QEA ++A LR I N+ + Sbjct: 484 DEVLRGIAQRARLVLRHSDVFGRYGGEEFLVFLPHTSMQEAIVIAERLRTAIANTPY-VV 542 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++++TIS GIA + + ADQALY +K +GRN C++ Sbjct: 543 KQTAVNVTISLGIAWTEQVDDPERLTQLADQALYRSKAAGRN---CYT 587 >gi|91777942|ref|YP_553150.1| diguanylate cyclase [Burkholderia xenovorans LB400] gi|91690602|gb|ABE33800.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 604 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 11/178 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145 L + L+ D L+GL N F+ L + E+L+++F D+D FKQIND Sbjct: 399 LHAKQRELVHLATHDVLTGLPNRVLFMEKLENAIDEAMRRQERLAVLFVDLDRFKQINDQ 458 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIE 204 FGH VGDKV+A ++ +L V + V RLGG+EF G EAA +A+ + + Sbjct: 459 FGHSVGDKVLATVAHRLKQVLWSEDVVARLGGDEFIVLIEGPRSGEAAPAIASRIMATL- 517 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261 N ++ + G S+ + S GI++ + ++ AD A+Y AK GR + + D+ Sbjct: 518 NEEVRV-DGQSMTVGASIGISQFPEDSGTAEELLLNADAAMYAAKSGGRCAYMRYHDV 574 >gi|158422828|ref|YP_001524120.1| diguanylate cyclase [Azorhizobium caulinodans ORS 571] gi|158329717|dbj|BAF87202.1| diguanylate cyclase [Azorhizobium caulinodans ORS 571] Length = 402 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 8/171 (4%) Query: 93 LFISYNRISQLSRIDCLSG----LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 +F+ +R++ + LS L+ SA + S + +S++ D+D+FK IND FGH Sbjct: 208 MFMVLDRMASCDELTELSNRRSLLMGASALLRSALASGRPVSVLLVDLDHFKSINDRFGH 267 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ + + VGR GGEEF + A ++A LR+ + + Sbjct: 268 RTGDQVLRAFAQVARKLLRRGDLVGRYGGEEFCLVLKDAGSDVACVMAERLRRQVMDDLR 327 Query: 209 NISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRVV 256 + G ++ T++ G+A + ++ I I AD ALY AK GRNRVV Sbjct: 328 EV-EGHAVEATVAIGVASLEAGQRVAGIDRMIDAADHALYAAKDGGRNRVV 377 >gi|167898437|ref|ZP_02485838.1| putative transmembrane transcriptional sensor regulator [Burkholderia pseudomallei 7894] gi|167906789|ref|ZP_02493994.1| putative transmembrane transcriptional sensor regulator [Burkholderia pseudomallei NCTC 13177] gi|167915143|ref|ZP_02502234.1| putative transmembrane transcriptional sensor regulator [Burkholderia pseudomallei 112] gi|167922980|ref|ZP_02510071.1| putative transmembrane transcriptional sensor regulator [Burkholderia pseudomallei BCC215] gi|254183668|ref|ZP_04890260.1| diguanylate cyclase [Burkholderia pseudomallei 1655] gi|184214201|gb|EDU11244.1| diguanylate cyclase [Burkholderia pseudomallei 1655] Length = 489 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 316 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 375 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I+ I+ ADQALY AK GRNRVV Sbjct: 434 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYQAKADGRNRVV 484 >gi|53722321|ref|YP_111306.1| regulatory protein [Burkholderia pseudomallei K96243] gi|124381509|ref|YP_001024075.1| GGDEF domain-containing protein [Burkholderia mallei NCTC 10229] gi|167003134|ref|ZP_02268924.1| putative diguanylate cyclase [Burkholderia mallei PRL-20] gi|167723858|ref|ZP_02407094.1| GGDEF domain protein [Burkholderia pseudomallei DM98] gi|167742825|ref|ZP_02415599.1| GGDEF domain protein [Burkholderia pseudomallei 14] gi|167820003|ref|ZP_02451683.1| GGDEF domain protein [Burkholderia pseudomallei 91] gi|167849835|ref|ZP_02475343.1| GGDEF domain protein [Burkholderia pseudomallei B7210] gi|254193579|ref|ZP_04900013.1| diguanylate cyclase [Burkholderia pseudomallei S13] gi|254356715|ref|ZP_04972990.1| putative diguanylate cyclase [Burkholderia mallei 2002721280] gi|52212735|emb|CAH38767.1| putative regulatory protein [Burkholderia pseudomallei K96243] gi|124289529|gb|ABM98798.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia mallei NCTC 10229] gi|148025742|gb|EDK83865.1| putative diguanylate cyclase [Burkholderia mallei 2002721280] gi|169650332|gb|EDS83025.1| diguanylate cyclase [Burkholderia pseudomallei S13] gi|243061284|gb|EES43470.1| putative diguanylate cyclase [Burkholderia mallei PRL-20] Length = 489 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 316 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 375 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I+ I+ ADQALY AK GRNRVV Sbjct: 434 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGRNRVV 484 >gi|310819572|ref|YP_003951930.1| FHA domain/GGDEF domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309392644|gb|ADO70103.1| FHA domain/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1] Length = 293 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 81/159 (50%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F+ L Y+ LS++ FDID+FK+IND GH GD V+ L+ Sbjct: 136 DGLTGVSNKRYFLEYLEREMGRSHRYHRALSLMIFDIDHFKKINDVHGHLAGDHVLRELA 195 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + R GGEEFA ++A + A +RK+IE I +T Sbjct: 196 QSVKRLVRREQCFARYGGEEFALVMPEDGPEKARLFAEKIRKLIEERTFMFED-KEIPVT 254 Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256 IS G+A+ EP + I +D LY AKK+GRNRVV Sbjct: 255 ISIGVADMTADMTEP-TQFIKVSDANLYRAKKAGRNRVV 292 >gi|261409758|ref|YP_003245999.1| diguanylate cyclase [Paenibacillus sp. Y412MC10] gi|261286221|gb|ACX68192.1| diguanylate cyclase [Paenibacillus sp. Y412MC10] Length = 370 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 13/201 (6%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNE 127 V+ ++ I +L YI+ S +LF+ + ++ + L L +S ++E Sbjct: 170 VLATVVIYMLTEYINTS--NKLFLQMKKNAETDYLTSLHNLRQFEQLLSERFLEAQHFSE 227 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 +L ++ DID+FKQIND +GH GD V+ LS L + V R GGEEF+ + Sbjct: 228 RLGVLVVDIDHFKQINDTYGHAAGDVVLQQLSKVLRDHSRSFDEVSRNGGEEFSVLVPEA 287 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQ 242 + E A +A +R +E+ + G + IT+S G A H + I + ++ +AD+ Sbjct: 288 TIDETAAIAERIRAAVEDHVFTLEDGAKLRITVSIGAA--VHPDTIRSKNAKELLQQADR 345 Query: 243 ALYVAKKSGRNRVVCFSDIEN 263 LY AK+SGRNRV +I + Sbjct: 346 ELYRAKESGRNRVCSAPEIND 366 >gi|149185040|ref|ZP_01863357.1| putative response regulator [Erythrobacter sp. SD-21] gi|148831151|gb|EDL49585.1| putative response regulator [Erythrobacter sp. SD-21] Length = 295 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSIVFFDIDYFKQIN 143 +L S R+++LS D L+ L N + S + +I+ DID FK+IN Sbjct: 113 DLEQSNRRLTELSMQDPLTDLANRRWAEKAFERHYALSPAEAPGQTAILLIDIDRFKEIN 172 Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH VGD+ + +++ L GT R GGEEF EA A ++R Sbjct: 173 DRWGHDVGDRGLQAVAEVLRHAASGTSGLAARFGGEEFVILLRVDGPGEARRFAEEVRAS 232 Query: 203 IENSQINISSGP-SIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256 IE +I + S P + T+S G+ +E +S ++ RAD+ LY AK GRNR V Sbjct: 233 IERIEIEVDSPPRKLGCTVSIGVVVHAGEEKPSLSKLLKRADKVLYQAKSDGRNRSV 289 >gi|119470567|ref|ZP_01613270.1| putative two-component response regulator [Alteromonadales bacterium TW-7] gi|119446268|gb|EAW27545.1| putative two-component response regulator [Alteromonadales bacterium TW-7] Length = 299 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 8/135 (5%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGS 187 LS++ DIDYFK+ ND +GH GD+ + ++ L+ F+ R GGEEFAA Sbjct: 166 LSVLLMDIDYFKRYNDTYGHRAGDECLKKVAQSLLAQCKRGSDFIARYGGEEFAAILPDV 225 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIH---ITISAGIA--ERCHKEPISTIIYRADQ 242 S++EA AN LR + +++NI S++ ITIS G+A E +++ AD Sbjct: 226 SKEEAIAFANKLRNAV--NKLNIEHKTSLNAQCITISIGVATMEDGRSTSEHSLLEEADL 283 Query: 243 ALYVAKKSGRNRVVC 257 LY AK++GRNRVV Sbjct: 284 GLYEAKEAGRNRVVA 298 >gi|152994324|ref|YP_001339159.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150835248|gb|ABR69224.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 362 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 6/158 (3%) Query: 107 DCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ + N LG N +K++++ D+D+FKQIND GH +GD+V+ ++ +L Sbjct: 204 DYLTDIYNRRGLDLWLGQLNHDDKVAVLLIDVDHFKQINDRHGHSIGDRVLVEVASRLRT 263 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 ++ + R GGEEFA + + + + +++ + IT+S G+ Sbjct: 264 IYFEKHTIARWGGEEFAVVLVNPKTNTLPFIGS----MFQHALGTLPYKSVGKITVSVGV 319 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + H + +I +AD+ALY AK +GR++ V ++ I Sbjct: 320 SSIAHHDNFLDLINQADKALYTAKDNGRDQAVMYNRIH 357 >gi|163849434|ref|YP_001637478.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222527438|ref|YP_002571909.1| diguanylate cyclase with PAS/PAC sensor [Chloroflexus sp. Y-400-fl] gi|163670723|gb|ABY37089.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222451317|gb|ACM55583.1| diguanylate cyclase with PAS/PAC sensor [Chloroflexus sp. Y-400-fl] Length = 721 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 106/224 (47%), Gaps = 39/224 (17%) Query: 59 YGLEYILVENLS----LVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLL 113 YGL +I E L +V+ TI L L + + L+E I ID L+GL Sbjct: 509 YGLLHIAGEELPRSELIVMTGDTIKLALSNLELRATLREQAI----------IDPLTGLY 558 Query: 114 NHSAFISSLG-----SYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N SSL + E+L +I DID+FKQ ND +GH GD L +L V+F Sbjct: 559 NRRYLESSLPRELHRAQREQLPLTIAMIDIDHFKQFNDTYGHDAGD----VLLRELAVIF 614 Query: 167 GTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---GPSIHIT 219 + R GGEEF G + + A L ++ +I ++ GP +T Sbjct: 615 REHLRQSDLACRYGGEEFVLILPGVNRETARTRLQQLANTVQQRRITFANQLIGP---VT 671 Query: 220 ISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 IS G ER I+T+I AD ALY AK+ GRNRV+ F+D+ Sbjct: 672 ISIGYITYERGEYH-ITTLIQSADAALYAAKRGGRNRVIDFADL 714 >gi|238562057|ref|ZP_00441046.2| diguanylate cyclase [Burkholderia mallei GB8 horse 4] gi|238523405|gb|EEP86844.1| diguanylate cyclase [Burkholderia mallei GB8 horse 4] Length = 499 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 326 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 385 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 386 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 443 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I+ I+ ADQALY AK GRNRVV Sbjct: 444 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGRNRVV 494 >gi|152996275|ref|YP_001341110.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150837199|gb|ABR71175.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 545 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 17/186 (9%) Query: 84 YISGSILKELFIS-----YNRISQLSR---IDCLSGLLNHSAF---ISSLGSYNEKLSIV 132 Y+ LK+ +S +N+I +L R D L+G N AF + L S++ Sbjct: 362 YVESLGLKKAMLSGVKLIHNQIGELKRDAETDPLTGANNRRAFEFKLKQLALLEVPFSVL 421 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DIDYFK+INDN+GH VGD V+ + L V R GGEEF +S ++A Sbjct: 422 ALDIDYFKRINDNYGHSVGDDVLKQQTQILNRFCRDGDMVTRTGGEEFILLLKETSIEDA 481 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKS 250 ++A LR I ++ +IT+S GIA + IS + AD+ALY AK+ Sbjct: 482 FLVAERLRIAISEETFDVVG----NITVSIGIAAWAISDGISIEKTLSLADKALYQAKEQ 537 Query: 251 GRNRVV 256 GRNR + Sbjct: 538 GRNRCI 543 >gi|118588446|ref|ZP_01545855.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Stappia aggregata IAM 12614] gi|118439152|gb|EAV45784.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Stappia aggregata IAM 12614] Length = 723 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 12/166 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152 + +++ ID L+ +LN AF+ + ++ + V DID FKQIND +GH GD Sbjct: 548 LERVASIDDLTQILNRRAFLERANTEVQRFRRTKRPFTAVMMDIDKFKQINDLYGHATGD 607 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINIS 211 +V+ +D + + GR+GGEEF + ++A ++ LR +II Q++I Sbjct: 608 EVLRKFADTVSSALRSVDIFGRVGGEEFCMILHNADLEDAMLVCERLRQRIIAECQLDIV 667 Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 +T S G+A ++ ST++ +AD ALY AK +GRN+ V Sbjct: 668 KQT---VTCSMGLAAVAREDLEFSTLMQKADTALYEAKSTGRNKCV 710 >gi|331682933|ref|ZP_08383541.1| putative GGDEF domain protein [Escherichia coli H299] gi|331079754|gb|EGI50944.1| putative GGDEF domain protein [Escherichia coli H299] Length = 349 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 NR+ L+ D L+G+ N A S L + +++ D+D+FK+ ND +GHP GD+ Sbjct: 185 NRLDALAHRDPLTGIANRRAMNSILHDAIDNGGSFALIMLDVDFFKRYNDTYGHPAGDRC 244 Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 + ++D L + V R GGEEFA ++ EA +A +++ ++ + I + +S Sbjct: 245 LIQVADALQRSTRQSEDVVVRYGGEEFAIILFNATLPEAETVAARVKQELKLAAIPHQAS 304 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S GI + II AD ALY AK+SGRNR Sbjct: 305 AVNAFVTVSQGITCSAPAKTAEQIISDADAALYRAKESGRNR 346 >gi|255262458|ref|ZP_05341800.1| response regulator receiver modulated diguanylate cyclase [Thalassiobium sp. R2A62] gi|255104793|gb|EET47467.1| response regulator receiver modulated diguanylate cyclase [Thalassiobium sp. R2A62] Length = 459 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 12/161 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L E+ +++ DID+FK +ND +GH GD V+ ++ Sbjct: 292 DPLTGLFNRRYAMPHLERIAERAKESGREFAVMMLDIDHFKSVNDKYGHRAGDAVLIEVA 351 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHI 218 +L + R+GGEEF ++++EA I A LR +++++ +I G + + Sbjct: 352 RRLRNNLRLIDLIARVGGEEFLVTLPETTQEEAEIAAQRLRSVVDDTPFHIPQLGMPVPV 411 Query: 219 TISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+A E P + RAD ALY AK +GRN V Sbjct: 412 TLSIGVAMSGDEALLTPPFDHLFGRADAALYSAKNAGRNTV 452 >gi|206580868|ref|YP_002238397.1| sensory box-containing diguanylate cyclase [Klebsiella pneumoniae 342] gi|288935373|ref|YP_003439432.1| diguanylate cyclase with PAS/PAC sensor [Klebsiella variicola At-22] gi|206569926|gb|ACI11702.1| sensory box-containing diguanylate cyclase [Klebsiella pneumoniae 342] gi|288890082|gb|ADC58400.1| diguanylate cyclase with PAS/PAC sensor [Klebsiella variicola At-22] Length = 418 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 12/161 (7%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GLLN F + + + ++ DID+FK IND GH GD+V+ +S L Sbjct: 256 DPLTGLLNRREFYRLVEAPSFIAQGFCLLLIDIDHFKSINDIHGHQKGDEVLLVISRILE 315 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + R GGEEF S A ILA +R+ + Q ++ +T+S G Sbjct: 316 TSVDREDKIYRWGGEEFLLFLPHSPIARALILAEGIRQAVSEYQ-------TLSVTVSIG 368 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCFSDIE 262 +AE E I + R D+ALYVAK GRNRV + F ++E Sbjct: 369 VAEHHDGEAIDQLFSRVDKALYVAKNGGRNRVSRLPFENVE 409 >gi|121597126|ref|YP_990000.1| GGDEF domain-containing protein [Burkholderia mallei SAVP1] gi|126446618|ref|YP_001078531.1| GGDEF domain-containing protein [Burkholderia mallei NCTC 10247] gi|126456805|ref|YP_001075789.1| diguanylate cyclase [Burkholderia pseudomallei 1106a] gi|242312649|ref|ZP_04811666.1| diguanylate cyclase [Burkholderia pseudomallei 1106b] gi|121224924|gb|ABM48455.1| GGDEF domain protein [Burkholderia mallei SAVP1] gi|126230573|gb|ABN93986.1| diguanylate cyclase [Burkholderia pseudomallei 1106a] gi|126239472|gb|ABO02584.1| diguanylate cyclase (GGDEF) domain protein [Burkholderia mallei NCTC 10247] gi|242135888|gb|EES22291.1| diguanylate cyclase [Burkholderia pseudomallei 1106b] Length = 499 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 326 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 385 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 386 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 443 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I+ I+ ADQALY AK GRNRVV Sbjct: 444 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGRNRVV 494 >gi|76818658|ref|YP_335474.1| GGDEF domain-containing protein [Burkholderia pseudomallei 1710b] gi|76583131|gb|ABA52605.1| GGDEF domain protein [Burkholderia pseudomallei 1710b] Length = 484 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 311 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 370 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 371 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 428 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I+ I+ ADQALY AK GRNRVV Sbjct: 429 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGRNRVV 479 >gi|89093269|ref|ZP_01166219.1| Putative diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92] gi|89082565|gb|EAR61787.1| Putative diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92] Length = 577 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 14/171 (8%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 QL+ D L+GL N F + ++ +L ++ DID+FK IND GH GD Sbjct: 407 QQLADRDQLTGLYNRRGFDKVMEPVFGNAYRHHRELCLLVLDIDHFKAINDRHGHGYGDL 466 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ L+ L + R GGEEF ++ EA LA L + I N ++ G Sbjct: 467 VLTDLAKVLQHELRAGDLIARWGGEEFLLLLPETNHMEAVTLAERLIRNISNREVE-GDG 525 Query: 214 PSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVVCFSDI 261 H T+S GIAE K PI ++ AD+ LY AK++GRN+ C+ + Sbjct: 526 VQEHYTVSIGIAEL--KPPIVSFKQLLVEADKHLYRAKETGRNK-ACYQQV 573 >gi|323705617|ref|ZP_08117191.1| diguanylate cyclase with GAF sensor [Thermoanaerobacterium xylanolyticum LX-11] gi|323535094|gb|EGB24871.1| diguanylate cyclase with GAF sensor [Thermoanaerobacterium xylanolyticum LX-11] Length = 554 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 10/171 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y IS+ S D L+ N F I+ +S++ D+D FKQIND +GH Sbjct: 383 YFEISKRSITDPLTKTYNRRFFDQILHDSIAKSSIEKTPVSLIMLDVDRFKQINDTYGHM 442 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD V+ ++ ++ V R GGEEF+ + ++A ++A +R + + I Sbjct: 443 VGDAVLREIASRIKSCVRNNDIVARYGGEEFSVILPNLTAEQACVIAERIRYEVSSKPIK 502 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA-KKSGRNRVVCF 258 +G I+IT+SAG+A+ +K E +I AD+ALY K GR+RV + Sbjct: 503 TDAG-DINITVSAGVADFPNKAESAEKLISHADRALYAGCKTKGRDRVAVY 552 >gi|303242086|ref|ZP_07328577.1| diguanylate cyclase [Acetivibrio cellulolyticus CD2] gi|302590380|gb|EFL60137.1| diguanylate cyclase [Acetivibrio cellulolyticus CD2] Length = 376 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 9/174 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL------GSY-NEKLSIVFFDIDYFKQINDNFGHP 149 + R +L+R D L+GL N F L Y + L+++ FDID FK+ ND +GH Sbjct: 186 HKREFKLARTDKLTGLANRHYFDQKLEEEALYADYARQPLNVLMFDIDNFKKFNDTYGHI 245 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDK+++ D ++ R GGEEF + + + +R +E +N Sbjct: 246 WGDKLLSMFGDIVMQNIRKTDIPVRYGGEEFIVLIGDLDLEMVKSIGDRIRGQLEKQNLN 305 Query: 210 I-SSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + S +T+S GIA+ H + I +I AD+ALY AK+ G+N VV + +I Sbjct: 306 MGSEHTKCKVTVSCGIAQYPTHSKDIKEVIDFADKALYYAKEIGKNIVVSYDEI 359 >gi|290512759|ref|ZP_06552125.1| diguanylate cyclase [Klebsiella sp. 1_1_55] gi|289775100|gb|EFD83102.1| diguanylate cyclase [Klebsiella sp. 1_1_55] Length = 464 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 8/173 (4%) Query: 89 ILKELFISYNRISQLSR-IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140 I +L + ++ +SQ+ D L+ LLN L Y+ L++ DID+FK Sbjct: 283 ISSQLGVLFSSLSQMQNGKDALTSLLNRRYLPVVLKHEVTLAIEYDLPLTVAIIDIDFFK 342 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND +GH VGD+ I ++D L + ++ R GGEEF + + EA L LR Sbjct: 343 EINDKWGHMVGDRAIKHVADLLSDNIRSSDYLFRYGGEEFLLVLVETRAAEAFPLLERLR 402 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 K I N+ I IT S G A + ++ AD ALY AK+ GRN Sbjct: 403 KKIGQLAFNVGGDTQIPITASIGFAAHTGHPDYNLLLRDADNALYAAKREGRN 455 >gi|46579353|ref|YP_010161.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603088|ref|YP_967488.1| diguanylate cyclase [Desulfovibrio vulgaris DP4] gi|46448767|gb|AAS95420.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563317|gb|ABM29061.1| diguanylate cyclase [Desulfovibrio vulgaris DP4] gi|311233179|gb|ADP86033.1| diguanylate cyclase [Desulfovibrio vulgaris RCH1] Length = 243 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 10/166 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVG 151 R+ +LS +D L+GL N +F ++L + + ++++ D+D+FK +ND +GH G Sbjct: 75 RLERLSLVDPLTGLYNRRSFETALEKEMARWRRREAPVALLMLDLDHFKLVNDTWGHQAG 134 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ L+ L R+GGEEFA + EA A LR ++ +I Sbjct: 135 DRVLQTLARLLSSTVRIEDLPARVGGEEFAVIMPEVTGDEAYQAAERLRLVVAGHLFDIG 194 Query: 212 SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 SI + +S G+A E + +T++ AD+ALY AK+ GR+RV Sbjct: 195 V-ESIEVRVSIGVACTEMQNVADGATLVRLADEALYRAKQRGRDRV 239 >gi|326797145|ref|YP_004314965.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea MMB-1] gi|326547909|gb|ADZ93129.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea MMB-1] Length = 643 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 12/175 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 KE+ ++ +LSR D L+ LLN F+ +L NE S++F D+D FK IND G Sbjct: 218 KEIEDRTKQLDRLSRFDSLTNLLNRYGFLKALKRVQIENEHYSLMFMDLDGFKSINDRLG 277 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS--EQEAAILANDLRKIIEN 205 H VGD ++ + +L+ VGR GG+EF L EQ+A L D+ + Sbjct: 278 HAVGDDLLQQAAARLMSSLNERDLVGRWGGDEFLVLTLDREGLEQKANGLIEDISRPYVI 337 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +++N+S G +I G+A H +I AD A+Y KK+ + +V FS Sbjct: 338 NRMNLSIGVTI------GVAHYPEHGRSYDLLIQNADIAMYQQKKAEKGQVGFFS 386 >gi|293606786|ref|ZP_06689137.1| sensory box/GGDEF domain protein [Achromobacter piechaudii ATCC 43553] gi|292814790|gb|EFF73920.1| sensory box/GGDEF domain protein [Achromobacter piechaudii ATCC 43553] Length = 561 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 10/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151 + +L+ D L+ L N F+S + + ++ +++ D+D+FK IND +GH +G Sbjct: 392 LRELAATDALTTLPNRRHFMSRIAAELARIKGQGGLGSAVLMCDLDHFKHINDTWGHAIG 451 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ L VGR+GGEEFA + + A + A ++++ I ++ + S Sbjct: 452 DGVLQHFANTLRAQLREIDLVGRIGGEEFAVVLPDTDIERAHLFARNVQRQIADAPYS-S 510 Query: 212 SGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRV 255 G I +T+S GI+ K+ + I + R+D+ALY AK+ GRNR+ Sbjct: 511 GGRHIPLTVSIGISALHGKDEDAEIALSRSDRALYYAKRRGRNRI 555 >gi|289642348|ref|ZP_06474496.1| diguanylate cyclase [Frankia symbiont of Datisca glomerata] gi|289507880|gb|EFD28831.1| diguanylate cyclase [Frankia symbiont of Datisca glomerata] Length = 413 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 1/139 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L++ D+D+FK IND++GHP GD+V+A +S +L + R GGEEFA A Sbjct: 243 LALFIIDVDHFKAINDHYGHPAGDRVLAEISVRLRGTTRLGDVLARYGGEEFALLAPNVH 302 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVA 247 E +++A +R + S I +++ S+ T+S G A H ++ AD+ALY A Sbjct: 303 LDELSVVAERMRTRVAASPITVNADISLFATVSVGACAFPVHVSDQVELVGMADRALYRA 362 Query: 248 KKSGRNRVVCFSDIENNTC 266 K GR+R V + D+ + T Sbjct: 363 KALGRDRTVVWDDVASATA 381 >gi|71280966|ref|YP_269111.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71146706|gb|AAZ27179.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 415 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 16/165 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFKQINDNFGHP 149 + +L+ D L+G+ N AF L NE+LS ++ D+D+FK IND +GH Sbjct: 242 LEKLAYTDSLTGVANRCAF---LQVSNEELSRSRRLSYDVCVMMLDLDHFKVINDTYGHD 298 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKV+ +S+ + +GR+GGEEFA A G + LA+ L++ I + ++ Sbjct: 299 AGDKVLKQVSEAMNNCLRKEDTLGRIGGEEFAIIAPGVDKGGMHKLASRLQQSI--ALLD 356 Query: 210 ISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 S P + +IT+S G + + E + RAD+ LY AK SGRN Sbjct: 357 FSFLPENKNITVSIGYTKVSNDEDFKEALKRADKYLYSAKNSGRN 401 >gi|330501427|ref|YP_004378296.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328915713|gb|AEB56544.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 411 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 13/164 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + ++ D L+GL N AF + + ++S+ D+D+FKQIND FGH GD Sbjct: 252 LKKAAQFDALTGLNNRRAFYEQGLKMLQQAQRESREVSVAMLDLDHFKQINDGFGHASGD 311 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + + F M +GRLGGEEFA L +E A L + LR+ + + Sbjct: 312 SALVVFARAMNNAF-PDMLLGRLGGEEFALLTLHGAEHVAQAL-DRLRRQCAGLHYTVGA 369 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P ++ SAG+ + E + ++++ AD LY AK+ GR R V Sbjct: 370 PP---LSFSAGLYQ-GEPEDLESLLHEADIRLYRAKQQGRARTV 409 >gi|318060875|ref|ZP_07979596.1| hypothetical protein SSA3_23223 [Streptomyces sp. SA3_actG] gi|318075938|ref|ZP_07983270.1| hypothetical protein SSA3_04305 [Streptomyces sp. SA3_actF] Length = 210 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 21/191 (10%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNE 127 +L ++ + L G+ + ++ +S +R D L+GL AF +E Sbjct: 4 TLTALTAAVPLAAGWTAHAVALRRGLSR------ARRDPLTGLWTRDAFTRKARRLLRDE 57 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA---A 184 + +V D+D FKQ+ND +GH GD ++A ++ +L G GRLGG+EFAA A Sbjct: 58 RAVVVLADVDRFKQVNDRYGHAAGDALLASVARRLAHAAGRAGVCGRLGGDEFAAVLIDA 117 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRAD 241 G++ A+L L + E +++ T+S G R P +S ++ RAD Sbjct: 118 DGTAADLLALLHGVLARPAEGQPAEVAT------TVSLGWV-RAADHPGGDLSALLARAD 170 Query: 242 QALYVAKKSGR 252 +ALY AK++ R Sbjct: 171 EALYQAKQADR 181 >gi|313682782|ref|YP_004060520.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM 16994] gi|313155642|gb|ADR34320.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM 16994] Length = 568 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 18/180 (10%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFD 135 L IS S+L+ELF+ N+ D L+G+LN F Y+E + I+ D Sbjct: 397 LNDISQSLLRELFLK-NKAYH----DPLTGVLNRQYFYDY---YDENRRNIVTMGIIMID 448 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 +DYFK+IND +GH +GD+V+ ++ + + R GGEEF + + + Sbjct: 449 LDYFKKINDVYGHSMGDEVLKRSAEAIQNSIRNDDTLIRWGGEEFIVLVNTAKNSQLISV 508 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +R+ + S+I I + P + +I A + EP T I RAD+ALY AK +GRNR+ Sbjct: 509 SEHIRRTV--SEIVIETIPPVTASIGATLL--LEGEPFKTAIERADKALYDAKANGRNRI 564 >gi|312196611|ref|YP_004016672.1| diguanylate cyclase [Frankia sp. EuI1c] gi|311227947|gb|ADP80802.1| diguanylate cyclase [Frankia sp. EuI1c] Length = 534 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GL N F+ L + E+++++F D+D FK++ND +GH GD V+ S +L Sbjct: 369 DALTGLANRKLFLERLAVAGQRHGERMALLFCDLDGFKRVNDVYGHKAGDAVLRVTSARL 428 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + RLGG+EFA G+ +EA A + + S I I++ A Sbjct: 429 LGCIREQDLAARLGGDEFAVLLDGAGREEAGQAAGRIVGAMRRPVHVESRDYLIGISVGA 488 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + + +++RAD A+Y AK++G++ CF+ Sbjct: 489 AVVDPAGPTDVEALVHRADAAMYRAKRAGKS---CFA 522 >gi|288936330|ref|YP_003440389.1| diguanylate cyclase [Klebsiella variicola At-22] gi|288891039|gb|ADC59357.1| diguanylate cyclase [Klebsiella variicola At-22] Length = 379 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R+ ++ D L+G N +AF++ L L+++ D+DYFK+ ND++GH GD Sbjct: 215 QRLESIANRDALTGTANRRALNAFLAQLWEQKAPLALIMIDVDYFKRYNDHYGHQAGDDC 274 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 ++ ++ L + V V R GGEEF + G S A ++A +++ I ++ + + +S Sbjct: 275 LSSVAQVLKMAVRAEDDLVARYGGEEFVVSLPGVSLAHATVIAERIQQKIHDAALPHEAS 334 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S G+ P+ T+I RAD ALY AK GRN+ Sbjct: 335 AVAAVVTVSMGVVASDGTVPMETLIARADSALYQAKNKGRNQ 376 >gi|163783179|ref|ZP_02178173.1| hypothetical protein HG1285_14184 [Hydrogenivirga sp. 128-5-R1-1] gi|159881513|gb|EDP75023.1| hypothetical protein HG1285_14184 [Hydrogenivirga sp. 128-5-R1-1] Length = 278 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 98/185 (52%), Gaps = 24/185 (12%) Query: 80 LLLGYISGS-ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------- 130 +L+G I+G+ ILK L + + ID L+GL N L N+KLS Sbjct: 105 ILVGIITGTDILKGL-------PRFALIDPLTGLENRRV----LDYLNQKLSRQKAKDLF 153 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++F DID FK+IND +GH GDKV+ +++ ++ T V R GGEE E+ Sbjct: 154 VLFIDIDDFKKINDTYGHVFGDKVLKKVAEAILSSVRTYDNVIRYGGEEIVVVLHRVDER 213 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 EA +AN +R + + I P + +++S GIA ++ + I AD+A+Y AK+ Sbjct: 214 EAVEIANRIRDHVRS--IKFKEHPEVRVSVSIGIA--PYRGSLLKTIELADKAMYQAKRK 269 Query: 251 GRNRV 255 G++RV Sbjct: 270 GKDRV 274 >gi|117924782|ref|YP_865399.1| response regulator receiver modulated diguanylate cyclase [Magnetococcus sp. MC-1] gi|117608538|gb|ABK43993.1| response regulator receiver modulated diguanylate cyclase [Magnetococcus sp. MC-1] Length = 555 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 11/184 (5%) Query: 86 SGSILKELFISYNRISQLSRI---DCLSGLLNHS-------AFISSLGSYNEKLSIVFFD 135 + +++ E+ + R+ L + D L+GL NH+ + I+S N D Sbjct: 372 ADTLIAEVSMRAERMRTLRSLMIRDSLTGLYNHTTTKHFLDSEIASASRRNSTTCFAMID 431 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 +DYFK++ND +GH +GD+V+ LS L VGR GGEEFA + A + Sbjct: 432 LDYFKKVNDTYGHAMGDQVLVALSRLLQQRVRQSDVVGRYGGEEFAVVLTDIDLERAKAI 491 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + LR+ + ++G + S G+A E I AD+ALY AK+ GRN+V Sbjct: 492 LDQLREDFARVKF-FANGIEFTCSFSCGVAAFPRLETALEIGEAADKALYQAKREGRNQV 550 Query: 256 VCFS 259 V F Sbjct: 551 VAFQ 554 >gi|329923455|ref|ZP_08278937.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] gi|328941347|gb|EGG37641.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] Length = 370 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 13/201 (6%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNE 127 V+ ++ I +L YI+ S +LF+ + ++ + L L +S ++E Sbjct: 170 VLATVVIYMLTEYINTS--NKLFLQMKKNAETDYLTSLHNLRQFEQLLSERFLEAQHFSE 227 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 +L ++ DID+FKQIND +GH GD V+ LS L + V R GGEEF+ + Sbjct: 228 RLGVLVVDIDHFKQINDTYGHAAGDVVLQQLSKVLRDHSRSFDEVSRNGGEEFSVLVPEA 287 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQ 242 + E A +A +R +E+ + G + IT+S G A H + I + ++ +AD+ Sbjct: 288 TIDETAAIAERIRAAVEDHVFTLEDGAKLRITVSIGAA--VHPDTIRSKNAKELLQQADR 345 Query: 243 ALYVAKKSGRNRVVCFSDIEN 263 LY AK+SGRNRV +I + Sbjct: 346 ELYRAKESGRNRVCSAPEIND 366 >gi|299065300|emb|CBJ36468.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum CMR15] Length = 437 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 11/179 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 ++ + LF ++ + QLS D L+G+ N S F L S+V D+D+FK Sbjct: 249 TLYRRLFEAHVSLQQLSMHDALTGIYNRSYFNDQLPRVFDEARRRGRPFSLVMIDVDHFK 308 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 + ND FGH GD +A ++ L V F+ R GGEEFA +S ++A +LA Sbjct: 309 RYNDTFGHLKGDGCLAAIASALEGVMPRHTGFIARYGGEEFALVLPDASPRDALLLAESA 368 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 R+ + + ++ + PS ++TISAG A S ++ AD LY AK +GRN VV Sbjct: 369 REAVLHLRLE-APAPSRYVTISAGCATAAPGSAASLDALVAAADATLYRAKAAGRNLVV 426 >gi|296274666|ref|YP_003657297.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296098840|gb|ADG94790.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] Length = 308 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 10/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+ L N F + + N +SI+ D+D FK IND +GH +GD Sbjct: 141 LKELSSKDPLTQLYNRRYFTEAANTMQSLSIRNNHHISIIILDVDNFKNINDTYGHSIGD 200 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KVI LS L V R GGEEF +S A +A ++R+ +++ + + Sbjct: 201 KVIVSLSRILENNCRKSDIVARFGGEEFVILLYNTSLAFAQSVAENIRQNVQDYFVEVKE 260 Query: 213 GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256 T+S G+A+ + + I + I RAD+ALY AK+SG+N+V+ Sbjct: 261 -EKFSFTLSLGVAQFDAQIDKDIESTINRADKALYNAKESGKNKVI 305 >gi|39996654|ref|NP_952605.1| GGDEF domain-containing protein [Geobacter sulfurreducens PCA] gi|39983535|gb|AAR34928.1| GGDEF domain protein [Geobacter sulfurreducens PCA] gi|298505667|gb|ADI84390.1| diguanylate cyclase [Geobacter sulfurreducens KN400] Length = 389 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 8/177 (4%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137 IS S +L R+ ++R D L+GL NH + L + + SIV DID Sbjct: 204 ISDSYQSQLRELNARLELMARTDLLTGLANHWEMVMRLAAEQSRSERNGKVFSIVLADID 263 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK++ND GH GD+VI ++D L R GGEEF + A +A Sbjct: 264 HFKKVNDTHGHQAGDRVIRGIADTLRTNIRREDICSRWGGEEFLIILPEADLPRAGAVAA 323 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L + N+ + G I +T+S G + +I R D ALY AK +GR+R Sbjct: 324 KLLAKVRNTVVPW-DGRDIRVTVSIGYGTSEPGMSVDELIRRVDDALYSAKAAGRDR 379 >gi|148656082|ref|YP_001276287.1| diguanylate cyclase [Roseiflexus sp. RS-1] gi|148568192|gb|ABQ90337.1| diguanylate cyclase with GAF sensor [Roseiflexus sp. RS-1] Length = 733 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 17/172 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149 + + L+ D L+GL N F+S+ E+ L ++ D+D FK+IND+FGHP Sbjct: 555 FEEVQYLAITDPLTGLYNRRYFLSAARRELERAHRHHSPLVVIIADLDDFKRINDDFGHP 614 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+ + SD L + V R GGEEF + E + +R + SQ Sbjct: 615 VGDRALRAFSDLLRRELRSIDLVARYGGEEFILLLPETDENGGVQVVERVRLLW--SQTT 672 Query: 210 ISSGPSI-HITISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRV 255 I++G + +T S G+A + EP I T++ RAD+AL AK++G+NR+ Sbjct: 673 IATGQGVARMTSSFGMA--VYAEPFDGMSIDTLVARADEALLCAKQAGKNRL 722 >gi|88857357|ref|ZP_01132000.1| hypothetical protein PTD2_02316 [Pseudoalteromonas tunicata D2] gi|88820554|gb|EAR30366.1| hypothetical protein PTD2_02316 [Pseudoalteromonas tunicata D2] Length = 513 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 29/189 (15%) Query: 87 GSILKELFISYNRISQL---SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136 S+ KE I R+++ S D L+ L N +AF +S N+ L +V D+ Sbjct: 332 DSLEKETSIYRERLAEQKFKSLQDSLTKLPNRAAFDERFQLEFNSFKRNNKNLCLVVIDV 391 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND+FGH GDK + ++ L F+ R GGEEF + Sbjct: 392 DHFKRINDSFGHSAGDKTLQVIASALKKTVRNTDFIARFGGEEFIIIMPDT--------- 442 Query: 197 NDLRKII---ENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVA 247 DL++II E + I + P S+ ITIS G + + + RAD ALY A Sbjct: 443 -DLKQIIQPLEKIRKAIKAIPFKFKDTSVQITISIGATQFMSVDTTQEVFDRADDALYEA 501 Query: 248 KKSGRNRVV 256 K++GR+R+V Sbjct: 502 KRTGRDRLV 510 >gi|253559457|gb|ACT32418.1| putative diguanylate cyclase [Pseudomonas fluorescens] Length = 691 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 8/157 (5%) Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+GL N +A+ L + L + D+D+FK+INDN+GH GD+V+ + Sbjct: 533 VDPLTGLPNRAAWSERLEHEVVQWQRHGNSLLLAMLDLDHFKRINDNYGHLAGDRVLKLI 592 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L F+ R GGEEF + A LA LR IE + P + + Sbjct: 593 ASVLRKRLRGGDFIARFGGEEFILLVPDTPLAAGAKLAEALRLAIEACPFHFKGEP-VTV 651 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+ E +++ RADQALY AK +GRNR+ Sbjct: 652 TVSIGLTAFKPGEHSDSVLKRADQALYRAKNAGRNRI 688 >gi|217419172|ref|ZP_03450679.1| diguanylate cyclase [Burkholderia pseudomallei 576] gi|217398476|gb|EEC38491.1| diguanylate cyclase [Burkholderia pseudomallei 576] Length = 499 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 326 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 385 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 386 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 443 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I+ I+ ADQALY AK GRNRVV Sbjct: 444 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYQAKADGRNRVV 494 >gi|167840992|ref|ZP_02467676.1| GGDEF domain protein [Burkholderia thailandensis MSMB43] Length = 311 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + + D L+G+ N F S Y LS++ FD+D+FK IND FGH VG Sbjct: 144 KLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKTINDRFGHVVG 203 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ ++ V + GR GGEEFA +S EA +A +R+ I ++ I + Sbjct: 204 DNVLRMMAQRVADVVRSQDTFGRFGGEEFALLLPCTSLDEAMHVAEKIRQTIGSTPIE-A 262 Query: 212 SGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258 G + +T S G A T++ AD ALY AK+ GRN V F Sbjct: 263 EGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310 >gi|146306873|ref|YP_001187338.1| diguanylate cyclase [Pseudomonas mendocina ymp] gi|145575074|gb|ABP84606.1| diguanylate cyclase [Pseudomonas mendocina ymp] Length = 308 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 1/130 (0%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + LS++ DID+FK IND+ GH +GD+V+ ++ L V R GGEEF G Sbjct: 177 QPLSLLMLDIDHFKVINDSHGHALGDEVLKAVAQTLKNQLRNIDMVFRYGGEEFLVILSG 236 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 ++ + AA++ LR + Q + +G I ++IS G A E +++ RAD ALYV Sbjct: 237 TNREGAALVGERLRFAVLELQC-LDAGRPIEVSISLGCASLLPGESGESLLRRADSALYV 295 Query: 247 AKKSGRNRVV 256 AK+ GRNR+ Sbjct: 296 AKREGRNRLT 305 >gi|209694808|ref|YP_002262736.1| putative response regulator [Aliivibrio salmonicida LFI1238] gi|208008759|emb|CAQ78956.1| putative response regulator [Aliivibrio salmonicida LFI1238] Length = 443 Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 21/177 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142 LKE + + ++L+ D L+G N +A L ++++ S+++ DID+FK I Sbjct: 262 LKEKNVEF---AELAHRDSLTGARNRNAVRDWLDRMSQQVRWGKQQFSVIYIDIDFFKGI 318 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFG---TPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND GH VGD + L + ++VV G T F+ R GGEEF + + +A A + Sbjct: 319 NDKLGHQVGDDI---LREFVLVVTGSIKTTDFLVRWGGEEFIVFSPQTGLDQAFEKAEHI 375 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 R+ +E+ + +T S G+AE + E IS +I RAD ALY AK GRNRVV Sbjct: 376 RRTVEHHLWCHNES----LTCSFGVAEMGN-ERISEVIARADDALYKAKNQGRNRVV 427 >gi|310823301|ref|YP_003955659.1| response regulator/ggdef domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309396373|gb|ADO73832.1| Response regulator/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1] Length = 349 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 11/171 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QLS +D L+ L NH F L Y++ L ++ D+D+FK+IND GHPVGD Sbjct: 164 LQQLSVLDGLTQLHNHRYFQERLREEFRCAQRYDDALCLILLDLDFFKEINDRHGHPVGD 223 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L V R GGEEFA + A +A + K + + Sbjct: 224 TVLCEVARILQQSVRETDIVARYGGEEFAVLLPRTHLAGAITVAERVWKGVAGQPMGADG 283 Query: 213 GPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDI 261 ++ IT S G++ H+ ++ ++ AD+ALY AK+ GRNRV S I Sbjct: 284 --ALRITASLGVSGFPHRTVLTPEQLLLTADEALYRAKREGRNRVCLHSPI 332 >gi|294637097|ref|ZP_06715411.1| putative membrane protein [Edwardsiella tarda ATCC 23685] gi|291089725|gb|EFE22286.1| putative membrane protein [Edwardsiella tarda ATCC 23685] Length = 331 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 11/197 (5%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 ++ +L+ +L V+ S+ + L+ + G L+ L R+ L+ D L+ L N F S Sbjct: 116 VQPVLLGDLEDVLHSLGM-LIGAWGGGYTLRYLARVRARLRYLAMFDDLTALPNRRHFYS 174 Query: 121 SLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 L S + ++ ++ D+D+FK++ND FGH VGD+V+ L F F R+GGE Sbjct: 175 YLMSRPQPRQIGLLIIDLDHFKRVNDEFGHTVGDRVLFQFGRLLRAEFTHHAFPARIGGE 234 Query: 179 EFAAAALGSSEQE--AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236 EFA EQ A++ A+ R + S I I+ + ++I GI+ E + + Sbjct: 235 EFALVL----EQSDCASVTASAQRLLQRASMIRIAEERMLSVSIGVGIS--TPDEMLESF 288 Query: 237 IYRADQALYVAKKSGRN 253 I+R D ALY AK +GR Sbjct: 289 IHRVDDALYQAKGAGRG 305 >gi|192361381|ref|YP_001983020.1| response regulator [Cellvibrio japonicus Ueda107] gi|190687546|gb|ACE85224.1| response regulator [Cellvibrio japonicus Ueda107] Length = 587 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 21/183 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 ++L+ S+ R+ L+ D L+GL N F SL + +++L+++F D+D FK IN Sbjct: 128 RQLYDSHQRLRSLAENDSLTGLANRYYFDESLRAAIARAKRQHDQLALLFLDLDNFKLIN 187 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSE---QEAAILAND 198 D+ GH VGD+V+ ++ +L+ V V RLGG+EFA A + E Q A + +D Sbjct: 188 DSLGHVVGDEVLKEVAQRLLNVVRAGDVVCRLGGDEFAILAHHFDTEESISQLAQRILDD 247 Query: 199 LRK--IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR +I N++ IS+ I AG S ++ AD A+Y AK+ GRN Sbjct: 248 LRSPIVIGNTEHCISTSIGIATYPDAG-------NSASDLLKAADMAMYRAKQDGRNNFQ 300 Query: 257 CFS 259 FS Sbjct: 301 FFS 303 >gi|189425520|ref|YP_001952697.1| diguanylate cyclase [Geobacter lovleyi SZ] gi|189421779|gb|ACD96177.1| diguanylate cyclase [Geobacter lovleyi SZ] Length = 637 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 10/164 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +L+ D L+G N F IS + +LS++ D+D FK+IND GH Sbjct: 469 QQLQRLAETDPLTGTANRRRFYDVLTVEISRSLRHGRQLSVLMLDLDNFKEINDTNGHDT 528 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD++++ L L V T +GR GG+EF A + EA +LA L + + Sbjct: 529 GDRILSRLVALLGDVLRTSDLLGRSGGDEFLILAPETDAVEARMLAEKLLVAVREGLRDP 588 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +G +++S G A + + ++ RADQALY AK+ GRNR Sbjct: 589 LAG---QVSVSIGAATLLNGDGPDDLVKRADQALYRAKQYGRNR 629 >gi|320175456|gb|EFW50555.1| diguanylate cyclase GGDEF domain protein [Shigella dysenteriae CDC 74-1112] Length = 558 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND F H GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFSHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|152989140|ref|YP_001348801.1| hypothetical protein PSPA7_3441 [Pseudomonas aeruginosa PA7] gi|150964298|gb|ABR86323.1| membrane protein, putative [Pseudomonas aeruginosa PA7] Length = 401 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 16/197 (8%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122 LV++ + +L Y+ +E F+ + ++ D L+GL+N + + Sbjct: 199 GLVVLICSFAL---YLQDYAQREQFLGRRLLGMMAEQDSLTGLVNRRYYELLAQRALEQG 255 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFA 181 + ++++ D+D FK ND++GHP GD + L L PM RLGGEEFA Sbjct: 256 TREGKGVALILVDVDDFKAYNDHYGHPAGDAALHRLGAVLRQGARRPMDIAARLGGEEFA 315 Query: 182 AAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIHITISAGIAERCHKEPISTIIY 238 S E +A LR+ +E I S+GP +TIS G+A + + Sbjct: 316 VLLYDSEEGNTLAIAERLRQAVEALGIEHRRSSAGPC--LTISLGVAYSTSGMGLDALYR 373 Query: 239 RADQALYVAKKSGRNRV 255 AD+ALY AK +GRN V Sbjct: 374 EADRALYEAKDAGRNMV 390 >gi|313498951|gb|ADR60317.1| Diguanylate cyclase [Pseudomonas putida BIRD-1] Length = 503 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 10/175 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 ++L S ++ L+ D L+GL N F +L L+++ DID+FK+ N Sbjct: 322 QQLLESNQQLESLAMHDALTGLANRRCFDEALTQEIRMAHRNGTPLALLMIDIDHFKRYN 381 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GHP GD + ++ L P + R GGEE A + AA++A + + Sbjct: 382 DTYGHPAGDACLQQMAYLLSSCIRRPRDLLARYGGEEMAVILPDTDIDGAAVVARLMHER 441 Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + P H+T S GIA + + ++I RAD+ALY+AK++GRNR+ Sbjct: 442 LTLQPVPHEGSPFGHVTASIGIACSDGTTLDSPPSLIERADRALYIAKQAGRNRL 496 >gi|229526422|ref|ZP_04415826.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio cholerae bv. albensis VL426] gi|229336580|gb|EEO01598.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio cholerae bv. albensis VL426] Length = 367 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 8/191 (4%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-- 128 L+++S I +L ++ K+L ++ LS D L+ + N F+ L + + Sbjct: 176 LIVLSSYIVILKRSVAEQT-KQLREMNTQLMTLSNTDSLTNIHNRRYFMMQLNNIQKTQC 234 Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 ++++ FD+D FK INDNFGH +GD+VI F++ Q + + R+GGEEFA A Sbjct: 235 GITLIIFDLDNFKSINDNFGHDLGDQVIQFVARQAKKLISNDQTIARIGGEEFAVIACFP 294 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYV 246 + + A A L I + ++ P + +T+S G+A K S + AD ALY Sbjct: 295 TVETAENFAQTLVTTIREQ--SRTTFPQLGLVTVSIGLA-YYPKPQESYDLVSADNALYQ 351 Query: 247 AKKSGRNRVVC 257 AK +G++RVV Sbjct: 352 AKNAGKDRVVS 362 >gi|291287747|ref|YP_003504563.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] gi|290884907|gb|ADD68607.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] Length = 434 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 11/165 (6%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS+ D L+ + N + F + + Y + +SI+ D+DYFK++ND +GH VGDKV+ Sbjct: 267 LSQQDPLTKIYNRTKFFEEVEKELDRVSRYGQDMSILMIDVDYFKEVNDQYGHLVGDKVL 326 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L+ + R GGEEFA ++++ A A+ +R+ + + Sbjct: 327 IELTQIIRQNIRKSDVFARYGGEEFALLMPMTAQKGAREKADLIREAVSTHNFDKCG--- 383 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T S G+A + + + + +AD ALY AK+SGRN V F + Sbjct: 384 -RVTCSFGVATYAEGDTVDSFVQKADIALYNAKESGRNMVQVFEE 427 >gi|171057748|ref|YP_001790097.1| diguanylate cyclase [Leptothrix cholodnii SP-6] gi|170775193|gb|ACB33332.1| diguanylate cyclase [Leptothrix cholodnii SP-6] Length = 366 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 14/165 (8%) Query: 101 SQLSRI---DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 ++LSRI D L+G+ N F ++G+ K LS++ FD+D+FK +ND FGH Sbjct: 202 AELSRIAITDALTGVWNRRHFEQTIGAERAKAQRHHTPLSLLLFDVDHFKALNDQFGHQA 261 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ L+ + + R GGEEFA +A LA LR ++ + Sbjct: 262 GDQVLTELARLVGRSLRDGDVLARWGGEEFAVILHHCPAADALRLAEKLRGLVAGHAFDR 321 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G+AE E + R D ALY AK GRN V Sbjct: 322 VG----TVTASFGVAELQPDETLDAWFRRVDLALYAAKSGGRNAV 362 >gi|153953341|ref|YP_001394106.1| signal transduction protein [Clostridium kluyveri DSM 555] gi|219853970|ref|YP_002471092.1| hypothetical protein CKR_0627 [Clostridium kluyveri NBRC 12016] gi|146346222|gb|EDK32758.1| Predicted signal transduction protein [Clostridium kluyveri DSM 555] gi|219567694|dbj|BAH05678.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 354 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 17/172 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHP 149 YN+I + S+ D L+GL + F S + EK+ +I+ DID FK+ NDNFGH Sbjct: 189 YNKIKENSQKDFLTGLFTRNYFFSVIK---EKIKNCGCGFAIIMVDIDNFKRFNDNFGHQ 245 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEE---FAAAALGSSEQEAAILANDLRKIIENS 206 GD V+ +S+ + V R GGEE + G+ + + +RK IE+ Sbjct: 246 YGDVVLKTVSNIIKSSLRKEDLVARYGGEEIIIYMYDIKGTLDVYNRMTT--IRKRIEDE 303 Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + S H+T+S GI+ ++E + +I +AD LY AK +G+N+VVC Sbjct: 304 LIEYNENSS-HVTVSMGISISSNNEENVEDMIRKADVNLYKAKNTGKNKVVC 354 >gi|33594381|ref|NP_882025.1| hypothetical protein BP3507 [Bordetella pertussis Tohama I] gi|33564456|emb|CAE43767.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332383792|gb|AEE68639.1| hypothetical protein BPTD_3456 [Bordetella pertussis CS] Length = 475 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ LLN +S +Y K LS++ DIDYFK IND GH GD V+ ++ Sbjct: 297 DTLTRLLNRKYLHVVLSKEVAYARKTGVPLSVLVADIDYFKSINDAHGHDAGDFVLQQVA 356 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + RLGGEEF + + +A +A LR+ I+ + G + +T Sbjct: 357 SLIASYSRGGDYTFRLGGEEFLVVLVDADGTQALNVAEALRRRIQEKATVLPDGGEVRLT 416 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+A ++ RADQALY AK GRNR V Sbjct: 417 LSIGVAAHDRHPDYQRLLKRADQALYAAKSGGRNRCV 453 >gi|187733517|ref|YP_001879735.1| diguanylate cyclase (GGDEF) domain-containing protein [Shigella boydii CDC 3083-94] gi|187430509|gb|ACD09783.1| diguanylate cyclase (GGDEF) domain protein [Shigella boydii CDC 3083-94] Length = 558 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND F H GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFSHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 545 KQAGRNR-VCASD 556 >gi|238895023|ref|YP_002919757.1| hypothetical protein KP1_3053 [Klebsiella pneumoniae NTUH-K2044] gi|238547339|dbj|BAH63690.1| hypothetical protein KP1_3053 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 489 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 27/167 (16%) Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+ L N S F +L K LS++ D+D+FK+IND++GH GDKVI F + Sbjct: 330 DPLTRLYNRSFFYDTLNQQLAKVNAQHPLSVLISDLDHFKRINDSYGHVAGDKVIQFAAS 389 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L R+GGEEFA + + E+EA +A +R + + ++ +TI Sbjct: 390 VLESHSRVDDAAARIGGEEFALLLVNTGEKEAQAIAERIRLAVSAGESHLPE----RMTI 445 Query: 221 SAGI---------AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S G+ AE C + RAD+A+Y AK +GRN+V+ + Sbjct: 446 SMGVYTTYDNSVTAEAC--------VQRADEAMYEAKNNGRNQVIVW 484 >gi|218681657|ref|ZP_03529458.1| response regulator PleD [Rhizobium etli CIAT 894] Length = 173 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 11/166 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N + L + LS++ DID FKQ+ND FGH GD+V Sbjct: 6 ELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKQVNDTFGHDGGDEV 65 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 + + ++ R GGEEF +S + AA +A LR +E++ + +G Sbjct: 66 LREFASRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAATVAERLRAAVESTPFMLKRAG 125 Query: 214 PSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 ++++T S GIA R P ++ +AD ALY AK +GRNRVV Sbjct: 126 EALNVTASFGIASRIAAVLTP-DQLMKQADLALYEAKNTGRNRVVA 170 >gi|115380215|ref|ZP_01467239.1| ggdef domain protein [Stigmatella aurantiaca DW4/3-1] gi|115362782|gb|EAU61993.1| ggdef domain protein [Stigmatella aurantiaca DW4/3-1] Length = 642 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 15/169 (8%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 QL+ D L+G+ N + + Y LSI+ D+DYFK++ND GH GD+ Sbjct: 442 QLTMTDPLTGVPNRRHLFTRMEQELARAERYQTPLSILMVDVDYFKRLNDAAGHRAGDET 501 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QINISSG 213 + + D L + R GGEEF +S+ +A + LR+ + ++ + SS Sbjct: 502 LRKVCDVLRTRVRKVDTLARYGGEEFMILLPQTSKADALEVGEKLRRAVADAPSLTSSSQ 561 Query: 214 PSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 P+ H+TIS G+A + H++ ++ +D ALY +K+ GRN+V + Sbjct: 562 PTGHVTISIGVACYPVDATHQD---MLMDCSDSALYASKRGGRNKVTAY 607 >gi|114775693|ref|ZP_01451261.1| GGDEF domain protein [Mariprofundus ferrooxydans PV-1] gi|114553804|gb|EAU56185.1| GGDEF domain protein [Mariprofundus ferrooxydans PV-1] Length = 450 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 94/175 (53%), Gaps = 16/175 (9%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----------LSIVFFDIDYFKQIND 144 ++++R+ +L+ +D L+ + N ++ L NE+ L ++ FDID+FK++ND Sbjct: 279 LTHDRLQKLAALDPLTAIYNRRFGLARL---NEEFSRAVRTTGHLGVMMFDIDHFKKVND 335 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH VGD+V+ ++ + R GGEEF +S++ + + +R ++E Sbjct: 336 TYGHLVGDRVLIQVTKTARAALREGDILMRYGGEEFLVILPVASKENSRDIGERMRHMVE 395 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVC 257 + + IH+TIS G+ E ++ AD+ALY+AK+SGRN+V+ Sbjct: 396 ETSVT-DGDQVIHVTISIGVTSYPELEVAGEQDLVKCADEALYLAKESGRNKVIV 449 >gi|33597102|ref|NP_884745.1| hypothetical protein BPP2514 [Bordetella parapertussis 12822] gi|33566553|emb|CAE37809.1| conserved hypothetical protein [Bordetella parapertussis] Length = 475 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ LLN +S +Y K LS++ DIDYFK IND GH GD V+ ++ Sbjct: 297 DTLTRLLNRKYLHVVLSKEVAYARKTGVPLSVLVADIDYFKSINDAHGHDAGDFVLQQVA 356 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + RLGGEEF + + +A +A LR+ I+ + G + +T Sbjct: 357 SLIASYSRGGDYTFRLGGEEFLVVLVDADGTQALNVAEALRRRIQEKATVLPDGGEVRLT 416 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+A ++ RADQALY AK GRNR V Sbjct: 417 LSIGVAAHDRHPDYQRLLKRADQALYAAKPGGRNRCV 453 >gi|291618849|ref|YP_003521591.1| PleD [Pantoea ananatis LMG 20103] gi|291153879|gb|ADD78463.1| PleD [Pantoea ananatis LMG 20103] gi|327395201|dbj|BAK12623.1| response regulator PleD [Pantoea ananatis AJ13355] Length = 236 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 8/153 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ + N SA I + ++ +++ DID+FK+IND +GHPVGDKVI L + + Sbjct: 85 DPLTDVWNRSAIIQRISDTLDQAPAALIILDIDFFKRINDEYGHPVGDKVICELVQR--I 142 Query: 165 VFGTPMF--VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 TP +GR+GGEEF + +A I+A + + S +N + P +T S Sbjct: 143 QRNTPAIASIGRIGGEEFTIMLPNTWLGDAVIVAGAILASLNASPLN--ALPERLVTASL 200 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G++ T+ +AD ALY AKK GRNRV Sbjct: 201 GVSWGAAGTRFETLYTQADAALYDAKKHGRNRV 233 >gi|317154951|ref|YP_004122999.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316945202|gb|ADU64253.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 498 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 97/209 (46%), Gaps = 21/209 (10%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P Y L VE + + ++L + I KE+ + +R D L+ + N Sbjct: 289 PDYRLGRDQVETFRSAVNHLGLALR----NALIFKEVKLRADR-------DGLTRIYNRH 337 Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 +F I YN LS++ D+D+FKQ+ND +GH GD V+ + + L F T Sbjct: 338 SFDERLIYEIKRRRRYNHDLSLLMVDLDHFKQVNDTYGHKAGDMVLRKVGEILTETFRTT 397 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ER 227 R GGEEF +SE+ A LA +R+ I+ G +T S G+A E Sbjct: 398 DLAARYGGEEFVVLLPHTSEEAAWKLAERIRESIQGCVFRF-DGHEFSVTASIGVASVEA 456 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ +AD+ALY AK +GRN VV Sbjct: 457 GALTRDDDLLIKADKALYKAKNNGRNMVV 485 >gi|225872136|ref|YP_002753591.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196] gi|225793220|gb|ACO33310.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196] Length = 532 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 13/172 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148 + R +LS ID L+ + N F ++ + LS++ D+D+FK +ND +GH Sbjct: 331 AMQRFQELSYIDPLTKVANRRQFEETMTTEWYRAMRRTAPLSLLMLDLDHFKLLNDTYGH 390 Query: 149 PVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD + + L + R GGEEFAA ++A +A LR IE+ Sbjct: 391 LRGDDCLMISAQTLSSRLKRAGELLARYGGEEFAAVLPDVKLEDAMQVAETLRSAIESMD 450 Query: 208 INISSGPSI-HITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255 I S P+ +TIS G+A C+ I ++ ADQALY AK++GRNRV Sbjct: 451 IANSQSPNGGRLTISVGVAV-CYPTANLSIEQLVDTADQALYAAKQAGRNRV 501 >gi|237507666|ref|ZP_04520381.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346] gi|254191152|ref|ZP_04897657.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237] gi|254263742|ref|ZP_04954607.1| diguanylate cyclase [Burkholderia pseudomallei 1710a] gi|254301806|ref|ZP_04969249.1| diguanylate cyclase [Burkholderia pseudomallei 406e] gi|157811571|gb|EDO88741.1| diguanylate cyclase [Burkholderia pseudomallei 406e] gi|157938825|gb|EDO94495.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237] gi|234999871|gb|EEP49295.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346] gi|254214744|gb|EET04129.1| diguanylate cyclase [Burkholderia pseudomallei 1710a] Length = 506 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 333 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 392 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 393 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 450 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I+ I+ ADQALY AK GRNRVV Sbjct: 451 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYRAKADGRNRVV 501 >gi|86749533|ref|YP_486029.1| response regulator PleD [Rhodopseudomonas palustris HaA2] gi|86572561|gb|ABD07118.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris HaA2] Length = 457 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N S L GS + L+++ DID+FK IND +GH GD V Sbjct: 290 EMAITDGLTGLHNRRYMESHLATLAEQAGSRGKPLALMILDIDFFKAINDTYGHDAGDDV 349 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213 + + ++ R GGEEF + Q A ++A LR+ I I G Sbjct: 350 LREFAVRIKKSIRGIDLACRYGGEEFVIVMPETDLQVAQMVAERLRRAIAGEPFAIEKGT 409 Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 I +TIS G++ K E + ++ RAD ALY AK GRNRVV + Sbjct: 410 KRIAVTISIGLSTLERKGEAVRDLLKRADTALYRAKHDGRNRVVAAA 456 >gi|144897254|emb|CAM74118.1| GGDEF domain [Magnetospirillum gryphiswaldense MSR-1] Length = 378 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 8/162 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N + F+ + L+ V DID+FK +ND++GH GD+V Sbjct: 218 RMATEDALTGLSNRATFMQRAAECWRLHARLKQPLAAVMMDIDHFKMVNDHYGHAAGDEV 277 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + L GR+GGEEFA GS EA ++A +R I +++G Sbjct: 278 LRLVGTVLHDHLREVDICGRMGGEEFAILLPGSGRDEAELVAERVRCAIAALVPQVAAG- 336 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ S G++ + + ++ AD LY AK+SGR+RVV Sbjct: 337 MVRVSASLGVSVAEPGQTLEQLLSVADVNLYRAKQSGRDRVV 378 >gi|33600945|ref|NP_888505.1| hypothetical protein BB1960 [Bordetella bronchiseptica RB50] gi|33575380|emb|CAE32457.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 475 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ LLN +S +Y K LS++ DIDYFK IND GH GD V+ ++ Sbjct: 297 DTLTRLLNRKYLHVVLSKEVAYARKTGVPLSVLVADIDYFKSINDAHGHDAGDFVLQQVA 356 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + RLGGEEF + + +A +A LR+ I+ + G + +T Sbjct: 357 SLIASYSRGGDYTFRLGGEEFLVVLVDADGTQALNVAEALRRRIQEKATVLPDGGEVRLT 416 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+A ++ RADQALY AK GRNR V Sbjct: 417 LSIGVAAHDRHPDYQRLLKRADQALYAAKSGGRNRCV 453 >gi|148545487|ref|YP_001265589.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida F1] gi|148509545|gb|ABQ76405.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida F1] Length = 342 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 79/130 (60%), Gaps = 4/130 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK+IND++GH GD+V+ ++D V GR+GGEEFAA G + Sbjct: 213 LAFLLLDIDDFKRINDSYGHQEGDQVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCN 272 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYV 246 Q A +A L++ I++ ++ S G + +T+S G+ E ++ + ++ RAD A+Y Sbjct: 273 AQVAEQIAERLQRQIQH--LSFSHGQQTYGVTVSQGLTELTDEDVALDSLYARADAAMYQ 330 Query: 247 AKKSGRNRVV 256 AK+ G+N++V Sbjct: 331 AKRQGKNQIV 340 >gi|261211720|ref|ZP_05926007.1| GGDEF domain protein [Vibrio sp. RC341] gi|260839070|gb|EEX65702.1| GGDEF domain protein [Vibrio sp. RC341] Length = 352 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 9/173 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152 N + L+ D L+G N + +S + + LS++ D+D+FK IND +GH GD Sbjct: 172 NSLLYLASRDPLTGAHNRLSLTTSFHHFEQFSDQTSLSLLVIDLDFFKLINDQYGHDTGD 231 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + L V G R+GGEEF S ++A + LR II SQ + Sbjct: 232 KVLVETTRLLAQVVGDSNLY-RIGGEEFCVTLFDQSLEQAEKVCERLRTII--SQHLFAF 288 Query: 213 G-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + +TIS G+ E + ++ ++ AD LY AKK+GRN+V F + N Sbjct: 289 GDKRVQVTISIGVCEYQPGDQLNDLLKFADIELYRAKKAGRNQVRLFQHAQFN 341 >gi|239833976|ref|ZP_04682304.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239822039|gb|EEQ93608.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 461 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 9/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S NR ++ D L+GL N ++ LS++ D D+FK+IND FGH Sbjct: 288 SLNRTITMAVTDSLTGLHNRRYLDTHMPVLLTRAMGRERPLSVIMLDFDHFKRINDQFGH 347 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ + +L + R GGEEF S + A +A +R + + Sbjct: 348 DAGDDVLREFAARLRKNIRGMDLLCRYGGEEFVVVLPDSDVEAARAVAERIRTAVSEAPF 407 Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++++G +++T+S GIA R + + R D ALY AKK GRNR+V Sbjct: 408 SVANGKHKVNLTVSMGIAGLRLIGDSAEALFSRTDAALYQAKKGGRNRIV 457 >gi|156936597|ref|YP_001440511.1| hypothetical protein ESA_pESA3p05478 [Cronobacter sakazakii ATCC BAA-894] gi|156534851|gb|ABU79675.1| hypothetical protein ESA_pESA3p05478 [Cronobacter sakazakii ATCC BAA-894] Length = 525 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 21/186 (11%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 EL + ++ D L+GL N F ++L + +S++ DID+FK+ ND Sbjct: 331 ELLKANQTFKSMAMADSLTGLANRRKFDTTLAKVLADAAATGSPVSLIMLDIDFFKRYND 390 Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 + GH GD + +S+ L +V T V R GGEEFA ++ +EA LA ++ Sbjct: 391 SRGHAAGDACLRLISNTLQMVTLRTSDLVARYGGEEFAIVLPDTTGEEALALAQRAVCMV 450 Query: 204 ENSQINISSG--PSIHITISAGIAERCH-------KEPISTIIYRADQALYVAKKSGRNR 254 + S P +TISAG CH ++ S +I AD ALY+AK GRN+ Sbjct: 451 REKHLPHPSTDLPEQIVTISAG----CHTVRGNGREDAFSVLIRGADTALYLAKNHGRNQ 506 Query: 255 VVCFSD 260 FS+ Sbjct: 507 AYRFSN 512 >gi|119488985|ref|ZP_01621920.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Phytochrome (GAF) sensor [Lyngbya sp. PCC 8106] gi|119454941|gb|EAW36084.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Phytochrome (GAF) sensor [Lyngbya sp. PCC 8106] Length = 628 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 19/196 (9%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNE------ 127 +T + + + ++L I+ + +++ D L+ + N F L +N Sbjct: 432 QLTTPIAVAIQQAELYEQLKIANQELEKMAMTDGLTLVANRRFFDKILSQEWNRLRREIG 491 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 LS++ DIDYFK+ ND +GH GD KV L ++ V + V R GGEEF A Sbjct: 492 TLSLIICDIDYFKRYNDTYGHLAGDSCLKKVAQVLQEE---VKRSGDLVARYGGEEF-AI 547 Query: 184 ALGSSEQEAAILANDL--RKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYR 239 L ++ E AIL +++ K+ + S + ++TIS G+A + P+ T+I R Sbjct: 548 LLPKTDLEGAILVSEVICSKVRALQITHEKSLVAPYVTISVGVASTIPEPPLIPKTLILR 607 Query: 240 ADQALYVAKKSGRNRV 255 ADQALY AKK+GRNRV Sbjct: 608 ADQALYEAKKNGRNRV 623 >gi|71281361|ref|YP_267569.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71147101|gb|AAZ27574.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 333 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 4/160 (2%) Query: 102 QLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 Q + +D L+GLLN L S+ + S + DID+FK++ND FGH +GDKVI ++ Sbjct: 173 QEALVDSLTGLLNRRGCDEKLQNLSHADTHSSLAIDIDHFKKVNDTFGHFIGDKVIQRIA 232 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217 + G R GGEEF + EA +A +R I ++ + Sbjct: 233 KTIQSHIGEQDLAVRFGGEEFVVVMTNTPLAEAKNIAEKIRIGISKMRLKQRDTNTFLPP 292 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I++S GIA+ + +T+ +AD ALY AK SGRN +C Sbjct: 293 ISVSIGIAQNDNISEWTTLFEQADTALYQAKNSGRNCCIC 332 >gi|333006522|gb|EGK26025.1| hypothetical protein SFK272_2227 [Shigella flexneri K-272] gi|333019049|gb|EGK38340.1| hypothetical protein SFK227_1705 [Shigella flexneri K-227] Length = 138 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 6/129 (4%) Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DIDYFK INDN+GH GDKV++ + + + G V R+GGEEFA A + + Sbjct: 1 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 60 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYV 246 ++A +RK +E ++++T+S G+ R + + ++ AD LY Sbjct: 61 GLLMAEKIRKGVELQPFTWQQ-KTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCLYR 119 Query: 247 AKKSGRNRV 255 +KK GRNR Sbjct: 120 SKKDGRNRT 128 >gi|332305139|ref|YP_004432990.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172468|gb|AEE21722.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 358 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 106/230 (46%), Gaps = 32/230 (13%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLGYISG-------------SILKELFISYNRISQ 102 T F EYI + ++ LV L YISG I EL + Sbjct: 138 TGFLTEEYIPLASMMLV--------FLLYISGIGIRSNREYRRSFDIEIELEAQRKELET 189 Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L++ D L+ + N F + +++I+ D+D+FK IND GH GD + Sbjct: 190 LNQTDALTSIYNRGYFNQHFEDQWQYAMRHELEIAILLIDVDHFKAINDTHGHLAGDACL 249 Query: 156 AFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 L+ + + V R GGEEF G + ++A +A + + I++ + + G Sbjct: 250 VNLAYAINKTVNRAIDVAARYGGEEFVVLLSGCNTEQARSMAQKIEQAIQDHKF-VHEGT 308 Query: 215 SIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 I +T+S GIA K + ST+I +ADQALY AK GRNR + F++ E Sbjct: 309 VIPVTVSIGIATTMPKPKQKSSTLIDQADQALYQAKAQGRNRSIVFTEDE 358 >gi|291525565|emb|CBK91152.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale DSM 17629] Length = 1021 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 26/172 (15%) Query: 106 IDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +D L+G NH AF S + KL V D+D FK +ND GH VGD+V++ Sbjct: 143 LDSLTGTYNHLAFENKCTSLIRQKGTKLLFVMLDVDDFKIVNDTLGHNVGDRVLSQTGQV 202 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILANDLRKII----ENSQINISS 212 L G VGRLGG+EFAA G + +A L+ L+ II ++ I +++ Sbjct: 203 LKEAVGANGIVGRLGGDEFAAIVFGLEDSDAVDEFCVKLSGRLKNIIFDMEYSASIGMTT 262 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G +T + Y ADQA+Y +K+ G+NR+ F+ I N Sbjct: 263 GDDRELT-------------FKDLYYEADQAMYYSKRQGKNRISFFNSIRKN 301 >gi|254491042|ref|ZP_05104223.1| GGDEF domain protein [Methylophaga thiooxidans DMS010] gi|224463555|gb|EEF79823.1| GGDEF domain protein [Methylophaga thiooxydans DMS010] Length = 310 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 10/159 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SA+ ++L + LS++ DID FK IND++GH GD+ + ++ Sbjct: 147 DNLTGLGNRSAYETNLTREIDIARRHQTPLSLLVMDIDNFKNINDSYGHNSGDRALKVVA 206 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 D +V R GGEEF LG+++ +AA L + R I SQI + G + Sbjct: 207 DTVVQALRLSDACYRFGGEEFTIL-LGNTDIKAARLVAE-RIRIAVSQILCNDGKQNFSF 264 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T S GIA+ +E + RAD ALY AK++GRN VC Sbjct: 265 TASLGIAQLHQREQGYHLFERADMALYQAKQTGRNLTVC 303 >gi|78776914|ref|YP_393229.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78497454|gb|ABB43994.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM 1251] Length = 516 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 11/173 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIV----FFDIDYFKQINDNFGHPV 150 ++I +L+ D ++ L N F +Y N++ V DID+FK+ ND +GH Sbjct: 337 DKIEELTITDGMTSLYNRRYFDEIFDNYLRSNQRTKQVPVFIIMDIDHFKEYNDTYGHQA 396 Query: 151 GDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208 GD I +S + + RLGGEEF G + EA LA+D+RK IEN +I Sbjct: 397 GDVAIKIVSKVMKTFLKRATDMAFRLGGEEFGILCSGINAIEALHLAHDIRKGIENEKIE 456 Query: 209 NISSGPSIHITISAGIAERCHKEPISTI-IYR-ADQALYVAKKSGRNRVVCFS 259 + SS + ++TIS GI + ST IYR AD+ALY AK++GRN+ V + Sbjct: 457 HKSSKVNEYLTISIGIIVIEEGKINSTKEIYRCADKALYKAKENGRNQAVLYD 509 >gi|78043169|ref|YP_359730.1| response regulator/sensory box protein/GGDEF domain-containing protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995284|gb|ABB14183.1| response regulator/sensory box protein/GGDEF domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 668 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 93/190 (48%), Gaps = 21/190 (11%) Query: 86 SGSILKELFISY-------NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131 SG L E FI ++ +LS D L+ N F L E+ ++ Sbjct: 480 SGEKLIETFIDLTERKKLEEQLYRLSITDYLTQAYNRRYFTEMLEREIERAKRTKMPFAL 539 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK +ND FGH GD V+ L++ + + R GGEEF + ++ Sbjct: 540 IMLDIDHFKNVNDRFGHAAGDLVLKTLANLIKNRIRQTDCLARWGGEEFVILLPNTPVEK 599 Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 AA LA +LR+ Q+++ P + +T S G+ C + + T++ RADQ LY AK S Sbjct: 600 AAGLAEELRE-----QLSMLEIPGVGRVTASFGVTGYCPGDTLDTLLMRADQMLYTAKAS 654 Query: 251 GRNRVVCFSD 260 GRN V FS+ Sbjct: 655 GRN-CVRFSE 663 >gi|332304894|ref|YP_004432745.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172223|gb|AEE21477.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 382 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 11/178 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140 ++L+EL + +L+ D L+ L N F + L Y LS++ D+D FK Sbjct: 195 TVLQELHDKNQLLEELAVQDPLTKLYNRRYFTNKLEIETARSLRYQHPLSLLIVDVDDFK 254 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 QINDN GH VGD+V+ +++ + V R GG+EF + + +++ +AN + Sbjct: 255 QINDNDGHLVGDEVLVEIANLITQQMRADDVVCRYGGDEFVILLVEACAEQSKEIANRIC 314 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + IE+ S +T+S G A+ +P+ + +ADQ +Y++KK G+N+V F Sbjct: 315 ESIEHCSFRRVSA---KVTVSIGYAQYV-GQPLGDFMQQADQMMYMSKKRGKNQVAFF 368 >gi|330501736|ref|YP_004378605.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328916022|gb|AEB56853.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 386 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 15/178 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 +L +++ LSR D L+ L N F +++ E LS+V DID+FK++ND Sbjct: 209 KLLEQQSQLDLLSRTDSLTQLGNRYQFNNLFPSLVANAVRQGEPLSLVLMDIDFFKKVND 268 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH GD ++ ++++ VF + RLGGEEF G++ +A LA R+ + Sbjct: 269 EHGHAGGDACLSAFAERMRKVFRRDADALLRLGGEEFGVLLPGTTLAQAWDLAEHFRQEL 328 Query: 204 ENSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVC 257 E + + +G + +T S G+ C H R D ALY AK+ GRNR+V Sbjct: 329 EAEGL-LLAGQRLTLTTSLGVG--CFSSRHDGDADAFFKRVDGALYRAKREGRNRLVA 383 >gi|310657418|ref|YP_003935139.1| hypothetical protein CLOST_0104 [Clostridium sticklandii DSM 519] gi|308824196|emb|CBH20234.1| protein of unknown function [Clostridium sticklandii] Length = 563 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 11/162 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + D L+G N S G N E S++ FD+D+FKQIND +GH GD V Sbjct: 263 QRAMRDSLTGAYNRSYLKEKFSKEFLKGCKNGETFSVILFDLDFFKQINDEYGHQKGDLV 322 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +D + + + R GGEEF G+ +EA I+A +R+ +E ++ G Sbjct: 323 LKGTADLVSKLIRKTDVLCRWGGEEFLVMLPGAHLEEATIVAEKIRREVETLRV---KGV 379 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IT S G+ + +++ ++ R D +LY+AK +GRN+VV Sbjct: 380 K-KITSSFGVTQCQNEDTEDSLFKRVDNSLYLAKLTGRNKVV 420 >gi|297516585|ref|ZP_06934971.1| diguanylate cyclase [Escherichia coli OP50] Length = 176 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 7/161 (4%) Query: 106 IDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ LLN + F + N LS++ D+D FK+IND +GH GD+++ + Sbjct: 13 MDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFKEINDTWGHNTGDEILRKV 72 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 S + +V R GG+EF +SE E A +R +E +++ ++G I + Sbjct: 73 SQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLRTAERIRSRVEKTKLKAANGEDIAL 132 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++S G A +I AD+ALY+AK+ GRNRV + Sbjct: 133 SLSIGAAMFNGHPDYERLIQIADEALYIAKRRGRNRVELWK 173 >gi|291528332|emb|CBK93918.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale M104/1] Length = 1021 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 26/172 (15%) Query: 106 IDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +D L+G NH AF S + KL V D+D FK +ND GH VGD+V++ Sbjct: 143 LDSLTGTYNHLAFENKCTSLIRQKGTKLLFVMLDVDDFKIVNDTLGHNVGDRVLSQTGQV 202 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILANDLRKII----ENSQINISS 212 L G VGRLGG+EFAA G + +A L+ L+ II ++ I +++ Sbjct: 203 LKEAVGANGIVGRLGGDEFAAIVFGLEDSDAVDEFCVKLSGRLKNIIFDMEYSASIGMTT 262 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G +T + Y ADQA+Y +K+ G+NR+ F+ I N Sbjct: 263 GDDRELT-------------FKDLYYEADQAMYYSKRQGKNRISFFNSIRKN 301 >gi|255318315|ref|ZP_05359550.1| diguanylate cyclase [Acinetobacter radioresistens SK82] gi|262379059|ref|ZP_06072215.1| response regulator [Acinetobacter radioresistens SH164] gi|255304627|gb|EET83809.1| diguanylate cyclase [Acinetobacter radioresistens SK82] gi|262298516|gb|EEY86429.1| response regulator [Acinetobacter radioresistens SH164] Length = 445 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 95/196 (48%), Gaps = 17/196 (8%) Query: 78 ISLLLGYISGSILKELFISYNRI-SQLSR-------IDCLSGLLNHSAFISSL------- 122 ISL G I+ +I S NRI SQL R D L+ L F+ S Sbjct: 247 ISLRFGIITMAIAPLTVSSINRIRSQLIRELQHHVAHDELTASLTRRQFMRSAHLLLRQR 306 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 ++ L+++ DID+FK IND +GH GD+ + + + GRLGGEEFA Sbjct: 307 TQESQSLAVLMLDIDHFKLINDKYGHQAGDEALRACAAVIRRSLRGYDLFGRLGGEEFAI 366 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRA 240 L EA +A +R+ ++ I + + I IS G+ P I ++++A Sbjct: 367 VLLDVGPAEAFEIAERIRETLKTHIIQLDAETQFSIRISIGLTLFNPAVPHNIEALLHKA 426 Query: 241 DQALYVAKKSGRNRVV 256 D ALY AK+SGR+RVV Sbjct: 427 DLALYEAKRSGRDRVV 442 >gi|162451174|ref|YP_001613541.1| GGDEF domain-containing protein [Sorangium cellulosum 'So ce 56'] gi|161161756|emb|CAN93061.1| GGDEF domain protein [Sorangium cellulosum 'So ce 56'] Length = 298 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 10/169 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + I +L D L+ + N +F +S Y+ L+++ FDID+FK IND GH Sbjct: 131 HEEIYRLMTFDGLTQVHNKRSFEVALEREVSRACRYHRHLALIMFDIDHFKNINDTRGHL 190 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ + R+GGEEFA + A ++A LR ++E + Sbjct: 191 TGDAVLRQMAALAAANVRRDDILARVGGEEFALLVPEIAVDSARLVAEKLRALVERTPFR 250 Query: 210 ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 G + +T S G+A P+S + RAD+ LY AKK+GRNRV+ Sbjct: 251 FEDG-EVAVTASFGVAGVTPDAPVSPMELYRRADERLYHAKKAGRNRVM 298 >gi|170769350|ref|ZP_02903803.1| diguanylate cyclase domain protein [Escherichia albertii TW07627] gi|170121674|gb|EDS90605.1| diguanylate cyclase domain protein [Escherichia albertii TW07627] Length = 564 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +F+ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMFVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHKHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 SI+ D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ Sbjct: 431 SIIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISHSLRAQDVAGRVGGEEFCVVLPGTNL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +A +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 AQAKDVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 551 KQAGRNR-VCASD 562 >gi|148975952|ref|ZP_01812741.1| GGDEF domain protein [Vibrionales bacterium SWAT-3] gi|145964697|gb|EDK29950.1| GGDEF domain protein [Vibrionales bacterium SWAT-3] Length = 656 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 8/135 (5%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S+ D+DYFKQ+ND GH VGD+V+ ++ ++ + V R GGEEF GS + Sbjct: 522 SLAILDLDYFKQVNDTHGHDVGDQVLVEVARRIQQHLFSSDVVARWGGEEFVLLLSGSLD 581 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-----ADQAL 244 + + + +R I + I+ SGP + I+ S G + ++ ++ Y+ AD AL Sbjct: 582 PQQQL--DIIRMAIAQTPIDTPSGP-LDISTSIGASVSIAQDQLNRDTYKKHLKVADDAL 638 Query: 245 YVAKKSGRNRVVCFS 259 Y AK+SGRNRVVC + Sbjct: 639 YQAKESGRNRVVCVA 653 >gi|126443971|ref|YP_001062835.1| putative transmembrane transcriptional sensor regulator [Burkholderia pseudomallei 668] gi|134282461|ref|ZP_01769165.1| diguanylate cyclase [Burkholderia pseudomallei 305] gi|126223462|gb|ABN86967.1| putative transmembrane transcriptional sensor regulator [Burkholderia pseudomallei 668] gi|134246018|gb|EBA46108.1| diguanylate cyclase [Burkholderia pseudomallei 305] Length = 506 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 333 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 392 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 393 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 450 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I+ I+ ADQALY AK GRNRVV Sbjct: 451 HEGSEVGFVTVSVGVAVWHPDGASAPHIAAIVEAADQALYQAKADGRNRVV 501 >gi|110636309|ref|YP_676517.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Mesorhizobium sp. BNC1] gi|110287293|gb|ABG65352.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Chelativorans sp. BNC1] Length = 730 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 89/188 (47%), Gaps = 19/188 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 EL S R L+ D L+GL N + S L + +++ D+D FK +ND Sbjct: 290 ELQESEGRARHLAFHDWLTGLPNRARLESRLDDILADLLPGQAEAAVLLLDLDRFKNVND 349 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKI 202 GH GD+VI + +L + G V RLGG+EFA + EAA +D L Sbjct: 350 TLGHRAGDQVIQQTARRLKDIVGNTGLVARLGGDEFAIVIASRNAVEAASELSDRVLAAF 409 Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I Q+ G + HI +S GIA H+E I+ +AD ALY AKK GR R F Sbjct: 410 IPPFQLE---GDTAHIGVSIGIATAPEAALHRE---EILRKADIALYEAKKQGRGRYELF 463 Query: 259 SDIENNTC 266 S ++T Sbjct: 464 SRTMDDTV 471 >gi|320535327|ref|ZP_08035446.1| diguanylate cyclase domain protein [Treponema phagedenis F0421] gi|320147827|gb|EFW39324.1| diguanylate cyclase domain protein [Treponema phagedenis F0421] Length = 366 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 2/128 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LSI+ DID+FK+IND +GH GD V+ ++ + T R GGEEF ++ Sbjct: 232 LSILMLDIDFFKKINDTYGHACGDLVLQQVAKIIQSCTRTGDMAARYGGEEFIVMLYNTN 291 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247 +EA +A +R +I++ I + + +TIS G+A K E + ++ RAD ALY + Sbjct: 292 SKEAQKIAERIRTLIQDLSIQYNEF-EVRVTISIGVATFLQKMESLKNLLERADIALYQS 350 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 351 KENGRNRV 358 >gi|302340686|ref|YP_003805892.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293] gi|301637871|gb|ADK83298.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293] Length = 398 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 79/164 (48%), Gaps = 11/164 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + ++S D L+GL N L Y K +++ DID+FK+IND +GH GD Sbjct: 235 LKRISVKDELTGLYNRRKIDDLLKHEWERTIRYKTKFTVIMMDIDHFKKINDTYGHDAGD 294 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ LS L+ GR GGEEF + ++ ILA R I S+ I Sbjct: 295 LVLKKLSRILLDNIRKADSCGRWGGEEFLIICQEADCHQSLILAERFRDTI--SKHRIPD 352 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 PS +T S GIA I T++ AD LY AK GRNRVV Sbjct: 353 LPS--VTASFGIASSEESSSIQTLLKAADSRLYEAKLQGRNRVV 394 >gi|241764147|ref|ZP_04762182.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii 2AN] gi|241366484|gb|EER60984.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii 2AN] Length = 418 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 11/155 (7%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N L + LS++ DID+FK++ND FGHPVGD+V+ ++ Sbjct: 258 DPLTGLHNRRGGEKILAEAQADARKHGRPLSLLVCDIDHFKRVNDRFGHPVGDRVLRDVA 317 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + + V R GGEEF +E AA LA +R + ++ + G +T Sbjct: 318 CMLRLAVRSRDAVIRWGGEEFVIVLDSCTEARAAELAERIRGRV-DAHRDAEVGA---LT 373 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +S G+A E + ++ RAD ALY AK+ GRNR Sbjct: 374 LSMGLATLLGGETVQQLVGRADAALYDAKRGGRNR 408 >gi|114320677|ref|YP_742360.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] gi|114227071|gb|ABI56870.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] Length = 237 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 93/209 (44%), Gaps = 35/209 (16%) Query: 74 ISITISLLLGYISGSIL--------KELFISYNRISQLSRIDCLSGLLNHSAF------- 118 I++ I+ Y G L E RI L+ D L+G++N F Sbjct: 34 ITVEITTNAAYYKGVKLIFCNCRDITERKRDQERIRYLATTDALTGIMNRGEFTRHLTKE 93 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 I +N +++V +D+D+FK++ND +GH GD+V+ Q+ R GGE Sbjct: 94 IERAARFNRPVAVVMYDLDHFKRVNDTYGHDAGDEVLKTAVAQVNNAIRRVDVHARWGGE 153 Query: 179 EF--------AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 EF AAA+ S+E+ A +A K E +T S G+ + Sbjct: 154 EFILLLPETDLAAAVKSAERLRAAIAEHPFKQPER------------VTASFGVTTLGPR 201 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +I RAD ALY+AK +GRNRV S Sbjct: 202 DRFDVLIKRADDALYLAKHAGRNRVEALS 230 >gi|109899867|ref|YP_663122.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109702148|gb|ABG42068.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 561 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 15/175 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGD 152 + +LS +D L+G+ N A L + EK LS++ D+DYFK NDN+GH GD Sbjct: 386 LQELSLLDGLTGIPNRRALDERLERELRLANREKWSLSLLMIDVDYFKLYNDNYGHAAGD 445 Query: 153 KVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209 + ++ QL+ F F R GGEEF L +++++ AI +A L + + ++ + Sbjct: 446 TALVAIA-QLLERFAQRSGDFAARYGGEEF-VFILPNTDKDGAIRVATALLEAVRDANLE 503 Query: 210 ISSGPS-IHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDI 261 P H+TIS G++ ++P + AD ALY AK+SGR+R+V +SDI Sbjct: 504 HKYSPKEEHLTISIGVSTCQPQDPKDADYVQRLADHALYSAKQSGRDRMVHYSDI 558 >gi|226944371|ref|YP_002799444.1| GGDEF protein [Azotobacter vinelandii DJ] gi|226719298|gb|ACO78469.1| GGDEF protein [Azotobacter vinelandii DJ] Length = 318 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 95/179 (53%), Gaps = 17/179 (9%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFK 140 I +EL + ++ L+ +D L+GL N AF LG ++++ FD+D+FK Sbjct: 140 IEEELAAAKHQAEALAHVDELTGLNNRRAFFQ-LGLQAFRQAARAAGPIAVIMFDLDHFK 198 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 QIND GH VGDKV+ +++ + GRLGGEEFA ++ EA A LR Sbjct: 199 QINDAHGHLVGDKVLVAVANGMRSQIREADIAGRLGGEEFALILPETTLSEALTAAERLR 258 Query: 201 KIIENSQINISSGPSIHI--TISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255 +I +++ + SIHI T S G+A C + ++ AD LY AK++GRNRV Sbjct: 259 GVIAATRL---AHGSIHIQCTSSFGVAV-CEDGSLDLEHMLSLADAGLYKAKRNGRNRV 313 >gi|330958634|gb|EGH58894.1| GGDEF domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 533 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 117/249 (46%), Gaps = 26/249 (10%) Query: 25 HTFMIYFSIFFSIFIATVIF---IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81 + + + + FFSIF+ V++ + ++ ++ + L Y ++ E V+ S +LL Sbjct: 13 YLYTVLWLYFFSIFLLAVVWEFKLESVAMYMLNLP--YDPDFEDAERWRFVLTSTGFALL 70 Query: 82 LGYIS----GSILKELFISYNRI-------SQLSRIDCLSGLLN----HSAFISSLGSYN 126 + +++ L SYN + L+R D LSGLLN H ++ L + Sbjct: 71 SMVVPFILLMRLMQRLQGSYNDLLAAQALSDSLARHDPLSGLLNRRVFHEQLVARLQQAS 130 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAAL 185 + ++ D+D FK IND GH VGD I ++D L G V RLGG+EF A Sbjct: 131 VQTAVFLIDLDKFKLINDTHGHAVGDAAICAVADSLREATMGWQASVARLGGDEFGLAVS 190 Query: 186 GS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243 G S+ E A LA ++ N + + P + ++ + G+A ++ RAD A Sbjct: 191 GDFSQIELATLAE---SVLANIAASSACLPRMTLSATLGVAISPLDGSDAEILLQRADSA 247 Query: 244 LYVAKKSGR 252 +Y K SGR Sbjct: 248 MYRGKNSGR 256 >gi|301644585|ref|ZP_07244575.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] gi|301077093|gb|EFK91899.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] Length = 558 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|293609140|ref|ZP_06691443.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829713|gb|EFF88075.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 473 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFF--DIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L F+ S+ EK+ + FF D+D+FKQ+NDN+GH +GD+ + Sbjct: 312 DELTSSLTRRQFLQSVRLLQEKVQKENKTSAFFMLDVDHFKQVNDNYGHQIGDRALQTCV 371 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + +GR GGEEFA ++++ A LA +R I I I I I Sbjct: 372 TTIQNILHPHDLLGRFGGEEFAIFIADTTKESAFELAEQIRIKISQQPIYIYGKLPIFIQ 431 Query: 220 ISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S GI + H+ I ++ AD ALY AK+ GRNRV Sbjct: 432 VSIGISLYSPSSHRA-IESLFKEADDALYQAKRQGRNRV 469 >gi|290509678|ref|ZP_06549049.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Klebsiella sp. 1_1_55] gi|289779072|gb|EFD87069.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Klebsiella sp. 1_1_55] Length = 720 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 11/225 (4%) Query: 46 ANIFLFYIGLTP-FYGLEYILVENLSLVIIS-ITISLLLGYI--SGSILKELFISYNRIS 101 A+ L Y+ P G E + S+ +I+ + SL+L +I S + +L + Sbjct: 239 ADEVLGYLAWQPRLPGAEAAQASSGSMGLIAGVAASLILLFILFSSLGMYKLARGERQAR 298 Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +++ ID LS L N A + L E +VF D+D FK +NDN+GH VGD +I Sbjct: 299 EIAMIDWLSRLPNRRALLLRLSQVCETGKHDIQCVVFIDLDGFKDVNDNYGHDVGDALIR 358 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L T + R+GG+EFA A G+ + A + + + +S I Sbjct: 359 HIASALQTRVPTGAMLARMGGDEFAMAVSGAKAIDRAAAFAWAALELLKAPVTLSK-RKI 417 Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSD 260 +I S GIA E ST ++ RAD A+Y AKKSG+ R + D Sbjct: 418 YIGASIGIASGAPAECSSTELFRRADIAMYHAKKSGKGRTAWYDD 462 >gi|258623913|ref|ZP_05718866.1| sensory box/GGDEF family protein [Vibrio mimicus VM603] gi|258583707|gb|EEW08503.1| sensory box/GGDEF family protein [Vibrio mimicus VM603] Length = 628 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 20/175 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ K+ + DID+FK+IND FGH Sbjct: 459 NRLRELSEKDALTDLWNRRKFDQAIHLECAKVRRYPNLAQTCLAIVDIDHFKRINDKFGH 518 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ +++ + F+ R+GGEEFA +S +EA + N +R I ++Q Sbjct: 519 SEGDRVLRGVTNSIQEQLRESDFIARIGGEEFAIIFPYTSIEEAERVLNRVRLYIASTQP 578 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIE 262 + +TIS G+ + C I Y RAD ALY +K SGRN++ + E Sbjct: 579 H-------DVTISGGVTDLC---AIPDQSYKRADLALYESKSSGRNQISILTQAE 623 >gi|152997763|ref|YP_001342598.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150838687|gb|ABR72663.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 368 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 4/167 (2%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGH 148 +EL + ++ ++ ID L+ LLN + L SY+ ++ D+D+FK+IND +GH Sbjct: 201 QELKETSAKLKLVAYIDALTELLNRRGMLQRLETSSYH-NFHLLLADVDFFKRINDGYGH 259 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD ++ L+ + + R GGEEF A SE EA LA +RK +E+ + Sbjct: 260 DAGDYALSQLAKIIQMSIPEGGLASRWGGEEFLIAVCDCSESEAFALAESIRKDVEDYEF 319 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G+A + I AD LY AK++GRNR Sbjct: 320 EYLD-QKFRMTLSFGMATMNESTSLREAITIADSRLYGAKRAGRNRT 365 >gi|91778946|ref|YP_554154.1| RNase II stability modulator [Burkholderia xenovorans LB400] gi|91691606|gb|ABE34804.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans LB400] Length = 667 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 11/182 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYF 139 SG+ + E ++ R+++L+ D L+GL N +A + + E + ++F D+D F Sbjct: 220 SGTDITEERLAQERLTELANTDSLTGLANRNAIQDRIRAAIEDATPGEAVGVLFLDLDNF 279 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K++ND++GH GD++I +S + + + RLGG+EF A + E + A Sbjct: 280 KKVNDHYGHVFGDRLIRDVSSAISLCLNEGDTLARLGGDEFIVLAARGTAHELEVTA--- 336 Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++I+E + S G ++ S GIA H + + ++I AD A+YVAK G+ Sbjct: 337 QRILERMRTPFSLGLVEVYTGCSIGIARYPEHGDSLESLIRSADTAMYVAKDEGKRTHRV 396 Query: 258 FS 259 FS Sbjct: 397 FS 398 >gi|26989228|ref|NP_744653.1| GAF domain/GGDEF domain-containing protein [Pseudomonas putida KT2440] gi|24984071|gb|AAN68117.1|AE016443_8 GAF domain/GGDEF domain protein [Pseudomonas putida KT2440] Length = 345 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 82/171 (47%), Gaps = 8/171 (4%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYFKQINDN 145 L + +R + + +D L+ L N A + L E+ L V+ D+D FK +ND Sbjct: 170 LRVEMDRGQRRALLDPLTQLWNRGALAAFQNRELRLAEERGLQLGAVYADLDRFKSVNDE 229 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH GDKV+ + +L + R GGEEF A QE A +A LR+ I + Sbjct: 230 HGHDAGDKVLCECARRLRATLRPDDLLVRQGGEEFVALLRVKDSQELAQIAERLRQSIGS 289 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + GP +T+S G A E I I RAD LY AK GR++VV Sbjct: 290 APFLLPGGPR-KMTMSIGCALLTQGEQIDDAIKRADGGLYAAKHGGRDQVV 339 >gi|120556349|ref|YP_960700.1| response regulator receiver modulated diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120326198|gb|ABM20513.1| response regulator receiver modulated diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 539 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 11/155 (7%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L ++ + DID+FK++ND FGHP+GD+++ LS Sbjct: 381 DSLTGLFNHTHTLHLLEQEIVRARQKDQPMCFAMIDIDFFKKVNDTFGHPIGDRILRSLS 440 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 L +GR GGEEFA + +A + N++R+ S++ +G ++ Sbjct: 441 MFLKQRLRKTDHIGRYGGEEFAIILPNTRPGDARNVLNEIRERF--SELTQQAGDREFNV 498 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 T S GIA+ E + RAD+ALY +K+ GRN Sbjct: 499 TFSCGIAD-WQGETAQALCERADRALYTSKEHGRN 532 >gi|150389362|ref|YP_001319411.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF] gi|149949224|gb|ABR47752.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF] Length = 381 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 11/182 (6%) Query: 83 GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135 Y++G ++ F+ + ++S D L+G+ N F I Y LS V D Sbjct: 189 AYMTGFYKRKQFVDSRELLRVSITDPLTGIYNRGKFNEELNRWIDYCNRYENALSFVMLD 248 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID FK++ND +GH +GD+VI + + R GGEEF + +A + Sbjct: 249 IDDFKRVNDGYGHLIGDRVIQNIVLTIKKGIRNTDIFARWGGEEFVILLPNTDTDQAMEM 308 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R I+N++ +IT S G+ E +++ RAD+ LY AK G+N V Sbjct: 309 MERMRVCIQNTK----HDKVENITCSFGLVALRKSENAESLLQRADKLLYDAKNCGKNAV 364 Query: 256 VC 257 +C Sbjct: 365 IC 366 >gi|157155861|ref|YP_001463257.1| diguanylate cyclase [Escherichia coli E24377A] gi|157077891|gb|ABV17599.1| diguanylate cyclase [Escherichia coli E24377A] Length = 558 Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNSGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRVVCFSD 260 K++GRN +VC SD Sbjct: 545 KQAGRN-LVCASD 556 >gi|323972745|gb|EGB67945.1| diguanylate cyclase domain-containing protein [Escherichia coli TA007] Length = 564 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYEFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|315136592|dbj|BAJ43751.1| putative diguanylate cyclase [Escherichia coli DH1] Length = 558 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|261252650|ref|ZP_05945223.1| GGDEF family protein [Vibrio orientalis CIP 102891] gi|260936041|gb|EEX92030.1| GGDEF family protein [Vibrio orientalis CIP 102891] Length = 368 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 K+L ++ +L+ D L+ L N I L +Y +E L + D+DYFKQ+N Sbjct: 193 KQLSRVNKQLEELTLTDSLTQLPNRRCAIRKLKAYWQESAENDEPLVCIMIDVDYFKQVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+++ L+ L F + V RLGG+EF + + +A +R + Sbjct: 253 DTAGHDAGDRLLVELAQTLADSFRSDDLVCRLGGDEFFVICPNTESEGGVHIAERVRHKV 312 Query: 204 ENSQINISSGPSI-HITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 +Q+ + G S+ +IS G+ ER + + +I AD A+Y AK +GRNRV Sbjct: 313 --NQMLVPVGDSVWRGSISVGVGERTPEMIDFNNLIKAADNAVYKAKSAGRNRV 364 >gi|251780630|ref|ZP_04823550.1| GGDEF domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084945|gb|EES50835.1| GGDEF domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 695 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 9/172 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 +N + ++ D L+G+ N + ++ + + SI+ D+D+FKQINDN+GH Sbjct: 523 FNTVEHFAKYDSLTGMFNRNVILTQGENILNNRLETKQNFSIIMIDVDFFKQINDNYGHD 582 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-I 208 +GD V+ +S + ++GR GGEEF + EA +A+ +R +EN + Sbjct: 583 IGDIVLKDVSSIIKNEIRNTDYLGRYGGEEFLVLLPNINLDEAKKIADRIRISVENYKYY 642 Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 ++S +T+S G+ E E + +AD+ALY+AK GRN + +S Sbjct: 643 YLTSEKYNRVTLSLGVYEFNKNEFDFFEGVKKADKALYMAKSLGRNMAIEYS 694 >gi|228922797|ref|ZP_04086095.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836852|gb|EEM82195.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 430 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRTDEKIAIILFDIDNFKTVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425 >gi|254480904|ref|ZP_05094150.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148] gi|214038699|gb|EEB79360.1| GGDEF domain protein [marine gamma proteobacterium HTCC2148] Length = 610 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 8/172 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 +L + R+++ +R+D L+GLLN F I + + S+V D+D FK ND Sbjct: 429 DLSAANRRLAEAARVDHLTGLLNRRGFTEEAETEIRRMFRSGKSFSLVLTDVDNFKSFND 488 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD V+ ++ L + R GGEEF + + AA LA LR+ I Sbjct: 489 RHGHVCGDHVLKRMASILEERTRDVDRIARWGGEEFILLLPETETEGAANLAEKLRESIA 548 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + + IT++ GIA E + T I RAD ALY K+ GRN+V+ Sbjct: 549 ENVFEFDN-QRLKITMTFGIASFRRGESLDTCIARADTALYHGKEGGRNKVM 599 >gi|167615849|ref|ZP_02384484.1| GGDEF domain protein [Burkholderia thailandensis Bt4] gi|257142438|ref|ZP_05590700.1| GGDEF domain-containing protein [Burkholderia thailandensis E264] Length = 489 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 316 LARLAGTDSLTGLHNRRALDETLEREWRRAVGGERPLAILFVDIDHFKRYNDTYGHQVGD 375 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I+ I+ ADQALY AK +GRNRVV Sbjct: 434 HEGSEVGFVTVSVGVAVWQPDGARAPHIAAIVEAADQALYQAKAAGRNRVV 484 >gi|238783276|ref|ZP_04627301.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970] gi|238715869|gb|EEQ07856.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970] Length = 372 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 3/164 (1%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +Y + + ID L+ L N ++ ++++ S ++ D+D+FK +ND +GH GD Sbjct: 186 AYFAMKNRANIDKLTQLNNRASVDYRLNAIHSSRLACGLMILDLDHFKSVNDTYGHDGGD 245 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ + L FVGR GGEEF Q +A +R+ +EN + +S Sbjct: 246 LLLTEVGKLLTSTIRDEDFVGRFGGEEFIVITHSHDPQAIKAVAERIRRRVENLDVELSD 305 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I TIS G + + I D+ALY AK GRN+VV Sbjct: 306 GRKIEATISIGASLYLPGMSMLKAIKMTDEALYQAKNQGRNQVV 349 >gi|119357129|ref|YP_911773.1| diguanylate cyclase [Chlorobium phaeobacteroides DSM 266] gi|119354478|gb|ABL65349.1| diguanylate cyclase [Chlorobium phaeobacteroides DSM 266] Length = 424 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 9/185 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 S+ +++ + ++ +L D + L N+ F + ++ K+S+ DID+FK Sbjct: 235 SLCEDVAVKSKKLDELFIRDEKTTLYNYRYFKEHLIIDVERAKRFDYKVSLAMIDIDHFK 294 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q ND GH GD+V+ L+D +V + R GGEEFA ++ + A+ +A LR Sbjct: 295 QYNDANGHIAGDQVLGRLADVIVSQCRSSDVPSRFGGEEFAVLFPKTAHETASSIAERLR 354 Query: 201 KIIENSQI-NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +I I + PS +T+S GIA T+I AD+ALY AK +GRN V+ F Sbjct: 355 MVICAEPIPHEKHQPSGRLTVSIGIATFPDDAADWYTLINNADRALYHAKAAGRNMVIAF 414 Query: 259 SDIEN 263 S I+ Sbjct: 415 SSIDQ 419 >gi|332994633|gb|AEF04688.1| Signaling protein with a acyltransferase and GGDEF domains [Alteromonas sp. SN2] Length = 635 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 17/180 (9%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 L+EL + +L+ ID L+G+ N F L S + LSI DID+FK+I Sbjct: 454 LRELSEVNQELERLTAIDPLTGINNRRHFDKKLKSEGRRSRREQTPLSIAVIDIDHFKRI 513 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILAND 198 ND +GH GD + ++ ++ G + + R+GGEEFA + A + Sbjct: 514 NDKYGHAGGDACLIHITG---IIQGMLLRLSDDLCRIGGEEFALILPNTDSDGAYHVVEA 570 Query: 199 LRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R IE S I + G +I +TISAG+A ++ + ++ AD+ LY AK+SGRN+V+ Sbjct: 571 IRDRIEKSPI-MFDGEAIQLTISAGLATSIITDEDHAAALLRLADEQLYAAKESGRNKVL 629 >gi|302383482|ref|YP_003819305.1| response regulator receiver modulated diguanylate cyclase [Brevundimonas subvibrioides ATCC 15264] gi|302194110|gb|ADL01682.1| response regulator receiver modulated diguanylate cyclase [Brevundimonas subvibrioides ATCC 15264] Length = 454 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N AF+ E +S++ DID+FK++ND FGH GD+V Sbjct: 287 EMAVTDALTGLHNRRYMAGQLQAFVGRAALGGEPVSVLVLDIDHFKKVNDGFGHDAGDEV 346 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + +L RLGGEEF G++ ++A +A +R+ + ++ + G Sbjct: 347 LREFAVRLATNVRAVDLPCRLGGEEFVVVMPGTTIEDAHRIAERIRRDVGSTPFRVMGGR 406 Query: 215 S-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +TIS G+A + ++ RAD+ +Y AK SGR++V+ + Sbjct: 407 EHLTVTISIGVAASTGPGDTPDALLKRADEGVYEAKASGRDKVIARA 453 >gi|229525716|ref|ZP_04415121.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229339297|gb|EEO04314.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] Length = 502 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +QL+ D ++GLLN S L +++ L+I DID FKQIND +GH +GD+VI ++ Sbjct: 345 AQLAARDPMTGLLNRRGMESFLKGKRHSQYLAIAVLDIDDFKQINDAYGHDMGDRVICYI 404 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +Q+ + V R GGEEF EQ I+ + +S + + G Sbjct: 405 GEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQITRIMQRIFDAVCRDSPLILEPG---- 460 Query: 218 ITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TIS GI E + AD+ LYVAK SG+N++V Sbjct: 461 FTISGGIEVVESTTDRSFEDLFKAADEKLYVAKTSGKNQLV 501 >gi|124515926|gb|EAY57435.1| Diguanylate cyclase [Leptospirillum rubarum] Length = 372 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 12/171 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHP 149 R+ + + D L+G L A +S L + L + FDID FK+IND GH Sbjct: 186 TRLKKEALFDNLTGALLRKAGLSELTRRMAQTDRRPDVPLFVALFDIDDFKRINDQDGHQ 245 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+A +++ RLGGEEF G+S + LA +LR+ IE +I Sbjct: 246 SGDRVLAAVAEATRRTIRKGDTFIRLGGEEFLLVFSGNSFDQVRSLAENLRQRIEK-EIQ 304 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S G +T+S G+ + E +S +++R+DQ +Y AK SG+N+ VC+ + Sbjct: 305 LSDGSG--VTVSIGLTQYKIGESLSELLHRSDQLMYDAKASGKNQ-VCWQE 352 >gi|189010637|ref|ZP_03006404.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4076] gi|189403615|ref|ZP_03007156.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4486] gi|189404557|ref|ZP_03007505.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4501] gi|208819162|ref|ZP_03259482.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4042] gi|217329047|ref|ZP_03445128.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. TW14588] gi|188999250|gb|EDU68236.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4076] gi|189359663|gb|EDU78082.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4486] gi|189364944|gb|EDU83360.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4501] gi|208739285|gb|EDZ86967.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4042] gi|217318394|gb|EEC26821.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. TW14588] gi|320191929|gb|EFW66576.1| hypothetical protein ECoD_01340 [Escherichia coli O157:H7 str. EC1212] gi|320641804|gb|EFX11192.1| putative diguanylate cyclase YedQ [Escherichia coli O157:H7 str. G5101] gi|326342366|gb|EGD66147.1| hypothetical protein ECoA_03441 [Escherichia coli O157:H7 str. 1044] gi|326344870|gb|EGD68617.1| hypothetical protein ECF_01448 [Escherichia coli O157:H7 str. 1125] Length = 558 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|188590037|ref|YP_001922342.1| putative ggdef domain protein [Clostridium botulinum E3 str. Alaska E43] gi|188500318|gb|ACD53454.1| diguanylate cyclase (GGDEF) domain protein [Clostridium botulinum E3 str. Alaska E43] Length = 695 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 9/172 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 +N + ++ D L+G+ N + ++ + + SI+ D+D+FKQINDN+GH Sbjct: 523 FNTVEHFAKYDSLTGMFNRNVILTQGENILNNRLETKQNFSIIMIDVDFFKQINDNYGHD 582 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-I 208 +GD V+ +S + ++GR GGEEF + EA +A+ +R +EN + Sbjct: 583 IGDIVLKDVSSIIKNEIRNTDYLGRYGGEEFLVLLPNINLDEAKKIADRIRISVENYKYY 642 Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 ++S +T+S G+ E E + +AD+ALY+AK GRN + +S Sbjct: 643 YLTSEKYNRVTLSLGVYEFNKNEFDFFEGVKKADKALYMAKSLGRNMAIEYS 694 >gi|167577724|ref|ZP_02370598.1| GGDEF domain protein [Burkholderia thailandensis TXDOH] Length = 489 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 316 LARLAGTDSLTGLHNRRALDETLEREWRRAVGGERPLAILFVDIDHFKRYNDTYGHQVGD 375 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I+ I+ ADQALY AK +GRNRVV Sbjct: 434 HEGSEVGFVTVSVGVAVWQPDGARAPHIAAIVEAADQALYQAKAAGRNRVV 484 >gi|86607232|ref|YP_475995.1| response regulator [Synechococcus sp. JA-3-3Ab] gi|86555774|gb|ABD00732.1| response regulator [Synechococcus sp. JA-3-3Ab] Length = 332 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 13/181 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK----LSIVFFDIDYF 139 ++L + LS D L+G LN A +L G + L ++ D+DYF Sbjct: 141 RQLRARNELLESLSLTDPLTGALNRRALDQALPHLLKQVGPREQARYRYLCLLMMDVDYF 200 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 KQ+ND +GH +GD V+ + +L + R GGEEF G + A L Sbjct: 201 KQVNDTYGHYIGDCVLQAIVGRLHNQLRPSSLLYRYGGEEFVCVTPGLNPARCHRYAESL 260 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 R+ I + I ++ S+ +TIS G P++ + +AD+ALY AK++GRNRV Sbjct: 261 RRAIASRPIEVAPQRSLPVTISIGGIVLSEDGPLAPEAALQKADEALYQAKQAGRNRVHL 320 Query: 258 F 258 F Sbjct: 321 F 321 >gi|117926705|ref|YP_867322.1| diguanylate cyclase [Magnetococcus sp. MC-1] gi|117610461|gb|ABK45916.1| diguanylate cyclase [Magnetococcus sp. MC-1] Length = 513 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 11/167 (6%) Query: 107 DCLSGLLNHSAFISS-----LGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+GL N+ F+ + S K LS++ D+D+FK +ND GH VGD V+ L Sbjct: 335 DPLTGL-NNRRFLEEYERTIVASSQRKEMFLSVLMMDLDHFKMVNDTHGHQVGDAVLKSL 393 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L+ V R GGEEF +A +R+ +E +IN+ G + Sbjct: 394 AGVLMQQTRASDLVVRYGGEEFMVVLQNERPHMGNQIAEKIRETVERLKINVPGG-CLQK 452 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 TIS G+AE ++ +AD ALY AK+ GRNRV+ S E Sbjct: 453 TISIGVAEFPTDGTDFDDVVEKADMALYRAKEQGRNRVISHSASETE 499 >gi|332531461|ref|ZP_08407365.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624] gi|332039130|gb|EGI75552.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624] Length = 406 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 14/191 (7%) Query: 90 LKELFISYN----RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 L+E + N R+ + + D L+GL N ++ + L++V D+D+ Sbjct: 215 LREQYKKINALQARLREQAVRDPLTGLYNRRHLGEVLEPELARCRAARSSLAVVLIDVDH 274 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK IND GH VGD V+ L+ + V R GGEEF S + AA A Sbjct: 275 FKCINDTRGHAVGDLVLQSLAQLMQRHVRAQDMVFRYGGEEFLLLLPDISLETAAQRAEA 334 Query: 199 LRKIIENSQINISS--GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 LR + + +S+ P + +T+S G+A H E +I ADQALY AK+ GRNR Sbjct: 335 LRTAFGQTPMRVSAKEAPPLTVTLSCGVAAFPLHAEQGEALISCADQALYAAKRQGRNRT 394 Query: 256 VCFSDIENNTC 266 + + C Sbjct: 395 QVWQPGAHAVC 405 >gi|253998194|ref|YP_003050257.1| diguanylate cyclase [Methylovorus sp. SIP3-4] gi|313200264|ref|YP_004038922.1| diguanylate cyclase [Methylovorus sp. MP688] gi|253984873|gb|ACT49730.1| diguanylate cyclase [Methylovorus sp. SIP3-4] gi|312439580|gb|ADQ83686.1| diguanylate cyclase [Methylovorus sp. MP688] Length = 331 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 24/211 (11%) Query: 67 ENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118 +N L +I +T + G+ I+G +L +++ ++ + + D L+GLLN F Sbjct: 107 KNKPLAVIGVTAPEVAGFDQITGMLL-QVYQNFIALINDNEQDTLTGLLNRKTFEHKVNK 165 Query: 119 -ISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 ++ + + +++ + FDID+FK +ND +GH +GD+V+ + Q+ Sbjct: 166 VVTRVQNRHQREDDALGLHYYMAIFDIDHFKLVNDRYGHLLGDEVLLLFAQQMTYSLRDH 225 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC 228 + R GGEEF A +QE ++ + R+ + + P + IT+SAG E Sbjct: 226 DLLFRFGGEEFVAIFECHDQQEMQMVLDRFRERVAEFEF-----PQVGRITVSAGYTEIM 280 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + S II RAD ALY AK GRNRV + Sbjct: 281 AYDVSSHIIDRADVALYYAKHHGRNRVCNYE 311 >gi|253700790|ref|YP_003021979.1| diguanylate cyclase with GAF sensor [Geobacter sp. M21] gi|251775640|gb|ACT18221.1| diguanylate cyclase with GAF sensor [Geobacter sp. M21] Length = 713 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 9/174 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 E+ R QLS D L+GL N + L + L+++F D+D+FK ND Sbjct: 501 EVLEESERFEQLSVTDALTGLYNRRFLKNRLEEELNRSIRQGLNLTVIFIDLDFFKNYND 560 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD + ++ + V R GGEEF A G+S+ EA I+A +R IE Sbjct: 561 LCGHLAGDDALRITAEIIKASLRDMDIVARYGGEEFCAVLPGTSKVEAMIVAERIRSEIE 620 Query: 205 NSQINISSG-PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 + S P + +T S G+A + +++ +D ALY AK GRNR+V Sbjct: 621 REKFPGESEIPQVRLTASLGVASFPEDGRTFTALVHASDVALYEAKAGGRNRIV 674 >gi|77163852|ref|YP_342377.1| two component diguanylate cyclase [Nitrosococcus oceani ATCC 19707] gi|254435846|ref|ZP_05049353.1| HDOD domain family [Nitrosococcus oceani AFC27] gi|76882166|gb|ABA56847.1| response regulator receiver modulated diguanylate cyclase [Nitrosococcus oceani ATCC 19707] gi|207088957|gb|EDZ66229.1| HDOD domain family [Nitrosococcus oceani AFC27] Length = 661 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 10/182 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQI 142 L +L ++ R+ Q++ D L+GL N + + Y S + D+D+FK++ Sbjct: 459 LADLAVANRRLGQMAMTDSLTGLPNRRYAMERMEQAWAEYERNQTPFSCLVMDLDFFKRV 518 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH +GD V+ +++ + + RLGGEEF + EA +A LR+ Sbjct: 519 NDQYGHEIGDSVLLEIANVFRGSARSSDIICRLGGEEFLVVCPHTVATEAFQVAERLRRA 578 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDI 261 +E + S+ +++S G+A +YR ADQALY AK++GRNR VC + Sbjct: 579 VEEHSWTMLDSTSV-LSVSIGLAASSEGMQHWNDLYRLADQALYQAKRNGRNR-VCMAPS 636 Query: 262 EN 263 N Sbjct: 637 PN 638 >gi|294339478|emb|CAZ87837.1| hypothetical protein; putative EAL and GGDEF domains; putative membrane protein [Thiomonas sp. 3As] Length = 780 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GLLN L +++ ++V FD+D+FK IND FGH GD V Sbjct: 357 RLANQDSLTGLLNRRGMGEYLQRAHDRARDHGIGYALVLFDLDHFKLINDGFGHAAGDAV 416 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L V R GGEEF SS + A A LR++I ++++++ G Sbjct: 417 LQQVAHLLQTRVRKEDQVARWGGEEFLVLLPDSSLETAHATAEKLRELISHTRMSV-GGA 475 Query: 215 SIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259 + +T S G++ P+++ ++ + D ALY AK GRNRV F Sbjct: 476 ELRLTASFGVSAWEPGGPLTSAELLGQCDSALYNAKAGGRNRVKQFE 522 >gi|170722098|ref|YP_001749786.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619] gi|169760101|gb|ACA73417.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619] Length = 533 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 9/168 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFG 147 +EL S ++ +L+ D ++GL N F L + L+++ DID FKQ+ND+ G Sbjct: 92 RELRSSQAQLERLAHYDTITGLPNRVLFQQQLADAILQGDGLAVLMLDIDGFKQVNDSLG 151 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD ++ + + + + V RLGG+EF G+ Q + +A+ LR + Sbjct: 152 HAMGDLLLQQATARFLQELASADRVCRLGGDEFVFMLRGTQGQVSHQVAHLLRCLQRPFD 211 Query: 208 INISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRN 253 +N G + +T S G+A RC H E + +++ AD A+Y AK+SGRN Sbjct: 212 LN---GSTALVTGSIGLA-RCPQHGEDVGSLLRHADTAMYAAKESGRN 255 >gi|160875204|ref|YP_001554520.1| diguanylate cyclase [Shewanella baltica OS195] gi|160860726|gb|ABX49260.1| diguanylate cyclase [Shewanella baltica OS195] gi|315267397|gb|ADT94250.1| diguanylate cyclase [Shewanella baltica OS678] Length = 325 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 10/162 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS----YNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 L+ D L+G LN + L Y ++ S++ DID+FK +NDNFGH +GD++ Sbjct: 164 HLANTDELTGALNRKQLKTKLEQSVYEYQQQQIPASLLLIDIDFFKTVNDNFGHIIGDQL 223 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + S + + R GGEEF + + AAI+A DLR+ IE Sbjct: 224 LNKFSQHIQKKIRKDDLLFRFGGEEFLILLPNTQFESAAIVAEDLRRSIEEQHF---LDQ 280 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T S G+A+ + + T + D LY AK +GRN VV Sbjct: 281 HTQVTCSIGVADLRQADTLDTWLKTCDNLLYSAKNAGRNCVV 322 >gi|83716605|ref|YP_439319.1| GGDEF domain-containing protein [Burkholderia thailandensis E264] gi|83650430|gb|ABC34494.1| GGDEF domain protein [Burkholderia thailandensis E264] Length = 506 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 333 LARLAGTDSLTGLHNRRALDETLEREWRRAVGGERPLAILFVDIDHFKRYNDTYGHQVGD 392 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 393 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 450 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I+ I+ ADQALY AK +GRNRVV Sbjct: 451 HEGSEVGFVTVSVGVAVWQPDGARAPHIAAIVEAADQALYQAKAAGRNRVV 501 >gi|310822354|ref|YP_003954712.1| hypothetical protein STAUR_5113 [Stigmatella aurantiaca DW4/3-1] gi|309395426|gb|ADO72885.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 656 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 15/169 (8%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 QL+ D L+G+ N + + Y LSI+ D+DYFK++ND GH GD+ Sbjct: 456 QLTMTDPLTGVPNRRHLFTRMEQELARAERYQTPLSILMVDVDYFKRLNDAAGHRAGDET 515 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QINISSG 213 + + D L + R GGEEF +S+ +A + LR+ + ++ + SS Sbjct: 516 LRKVCDVLRTRVRKVDTLARYGGEEFMILLPQTSKADALEVGEKLRRAVADAPSLTSSSQ 575 Query: 214 PSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 P+ H+TIS G+A + H++ ++ +D ALY +K+ GRN+V + Sbjct: 576 PTGHVTISIGVACYPVDATHQD---MLMDCSDSALYASKRGGRNKVTAY 621 >gi|271499827|ref|YP_003332852.1| diguanylate cyclase [Dickeya dadantii Ech586] gi|270343382|gb|ACZ76147.1| diguanylate cyclase [Dickeya dadantii Ech586] Length = 354 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 10/187 (5%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SI 131 +L+G ++ +L ++ ++S++D ++ L N + L S E ++ Sbjct: 169 PILVGLVTYRTAIKLAEHKRQLREISQLDGMTRLYNRHHWEQLLKSEFELCVHCPQVATL 228 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID+FK+IND+FGH VGD VI LS + GR GG+EF ++ E Sbjct: 229 ALLDIDHFKRINDSFGHHVGDDVILLLSRGIKSTLRQSDITGRFGGDEFGMVLPQTATAE 288 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250 A + LR+ + Q++ P++ ++IS G+ E E + AD ALY AK + Sbjct: 289 AEHIIQQLREYLHGIQLH--QAPALQVSISVGLVEFHPGMEDYRVWLKAADTALYQAKDN 346 Query: 251 GRNRVVC 257 GR VC Sbjct: 347 GRGCTVC 353 >gi|218689950|ref|YP_002398162.1| putative diguanylate cyclase [Escherichia coli ED1a] gi|218427514|emb|CAR08409.2| putative diguanylate cyclase [Escherichia coli ED1a] Length = 564 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|162145995|ref|YP_001600453.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus PAl 5] gi|161784569|emb|CAP54106.1| putative signalling protein, GGDEF family [Gluconacetobacter diazotrophicus PAl 5] Length = 390 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 4/134 (2%) Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + + +S++ FDID+FK IND GH +GD V+ + + G +GRLGGEEFA Sbjct: 247 TVGQPVSLLIFDIDHFKSINDIHGHAMGDAVLKLFARAMGEEVGQEAIMGRLGGEEFAML 306 Query: 184 ALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRAD 241 GS A A N R+ + + P +H+T+S G+ E R + + ++ AD Sbjct: 307 LPGSDRATARAAGQNIARRFTALAAQDFR--PPLHVTVSVGLTEVRTSRMTLDDLLAAAD 364 Query: 242 QALYVAKKSGRNRV 255 ALY AK GRNR+ Sbjct: 365 GALYQAKTLGRNRI 378 >gi|194439573|ref|ZP_03071646.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1] gi|194421482|gb|EDX37496.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1] gi|332343681|gb|AEE57015.1| cellulose synthesis regulatory protein [Escherichia coli UMNK88] Length = 558 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYEFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|114562278|ref|YP_749791.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114333571|gb|ABI70953.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 576 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 19/180 (10%) Query: 94 FISYNRISQLSRIDCLSGLLNH--------SAFISS--LGSYNEKLSIVFFDIDYFKQIN 143 ++ N+ + ++ D L+G+ N + FI + LG E S++ D+D FK IN Sbjct: 400 WMQRNQFMKQAQRDGLTGIFNRRTGQEMAENEFIQAQMLG---ESFSVLLMDLDLFKNIN 456 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD V+ ++ + + R+GGEEFA +E A A +R I Sbjct: 457 DQYGHATGDWVLKKVTHVIGDMLKPTHIFTRMGGEEFAIFMPKQTEDIAVEFAEQIRNAI 516 Query: 204 ENSQINIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 N IN SG +T+S G++ K+ +S +I RAD ALY AK +GRN V+C++D Sbjct: 517 AN--INTRFSGHDFTVTVSCGVSS-VDKDDLSLDPLIRRADLALYKAKHNGRNCVICYND 573 >gi|319786513|ref|YP_004145988.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1] gi|317465025|gb|ADV26757.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1] Length = 496 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 19/171 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++ +R D L+G+ N +L + LSI F D+D FKQIND GH VGD Sbjct: 325 LTEQARRDPLTGVYNRMQLEEALEREFSAAVAAGHPLSIAFVDLDDFKQINDRHGHLVGD 384 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + L + + V R GGEEF S+E A + + + + + Sbjct: 385 QVLRQFAQTLQRMLRSTDLVARYGGEEFLVVLAHSNEAAATRVLQRILDETARTPMAVVD 444 Query: 213 GPSIHITISAGIAER--------CHKEPISTIIYRADQALYVAKKSGRNRV 255 G +++T SAG+A R C + +++ ADQALY+AK+ GRN+V Sbjct: 445 GHPLYVTFSAGVATRDGEHGQFTCPR----SLVQAADQALYLAKRRGRNQV 491 >gi|304410681|ref|ZP_07392299.1| diguanylate cyclase [Shewanella baltica OS183] gi|304351165|gb|EFM15565.1| diguanylate cyclase [Shewanella baltica OS183] Length = 640 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 16/148 (10%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ FD D+FK+INDNFGH GD+ + ++ V+ G +GR+GGEEF + Sbjct: 496 SVIIFDADHFKKINDNFGHEQGDRALLTIASAGKVLTGNKDLIGRIGGEEFLILLPNTDA 555 Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKEP-ISTIIYR 239 + A LA+ L+ I S++ P+ + +T+SAG+A E +++ ++++ R Sbjct: 556 ERACELAHQLQAHI--SRLGAEDLPAELKLTVSAGVATLAPQTNTENTYQDKDFASLLKR 613 Query: 240 ADQALYVAKKSGRNRVVCFSDIENN-TC 266 AD ALY AK +GRN C +N TC Sbjct: 614 ADDALYEAKNAGRN---CVKAAKNEATC 638 >gi|300818624|ref|ZP_07098832.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] gi|300528796|gb|EFK49858.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] Length = 558 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|222109122|ref|YP_002551387.1| GGDEF domain-containing protein [Agrobacterium vitis S4] gi|221738396|gb|ACM39261.1| GGDEF domain-containing protein [Agrobacterium vitis S4] Length = 245 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 9/173 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNF 146 L +L +Y + SR D L+G L SAF+ L +++ +++F D+D+FK IND + Sbjct: 75 LNKLADAYETLRIQSRRDGLTGALTRSAFMEDLALTSQRGGTGALLFLDLDHFKSINDRY 134 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+ + L GRLGGEEF ++ ++R+ I Sbjct: 135 GHATGDEALRRTGLVLARYKSQSDVAGRLGGEEFGLFQSDLKFEQMRDRCEEVREEIARI 194 Query: 207 QINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256 ++ SG + I+ S G CH +P +S + AD+ LY AK GRNRVV Sbjct: 195 VLHAPSGSQVRISASIGA---CHCDPGFDLSDCLKAADKNLYQAKALGRNRVV 244 >gi|161504899|ref|YP_001572011.1| hypothetical protein SARI_03028 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866246|gb|ABX22869.1| hypothetical protein SARI_03028 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 308 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 117/250 (46%), Gaps = 20/250 (8%) Query: 32 SIFFSIFIATVIFIANIFLFYIGLTPF-----------YGLEYILVENLSLVIISITISL 80 S+ +FI ++ F ANI F + P GL + + L +V I+I + Sbjct: 58 SLLSVLFIGSIAFSANIVAFTLYALPSVALCLWLNGNEQGLRILYLMALPMVGIAIQHII 117 Query: 81 LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134 Y + ++ +L ++ LS +D L+GL N S L + S ++ Sbjct: 118 QKRYDNFAQQLMFKLLAERETLNSLSMLDPLTGLYNRRGLQSRLDTLQALDSHEHYVLLL 177 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND++GH +GD+ + +S + + V R GGEEF + Q+A Sbjct: 178 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTATEPQQARA 237 Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +R+ + + +I S+ ++T+S GIA + I I +AD+ALY AK GR Sbjct: 238 TAERIRQKVYDLKIPHMFNESVATNVTVSIGIAPLADRN-IGDAIEKADKALYEAKHLGR 296 Query: 253 NRVVCFSDIE 262 N ++ D+ Sbjct: 297 NHILVSGDLH 306 >gi|117919610|ref|YP_868802.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] gi|117611942|gb|ABK47396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] Length = 878 Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 10/174 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148 S +++ L+ D L+ L N + L N +L+ VF D+D FK IND+FGH Sbjct: 444 SEAQLAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRLNAQLATVFIDVDLFKHINDSFGH 503 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207 +GD+++ L+ +L + R+GG+EF A G S ++AA N LR++ E Sbjct: 504 SIGDEMLVELAKRLRSQLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQVFEQPF 563 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +S+G + +T S G++ T++ AD A+Y AK GRN +++ Sbjct: 564 V-VSTGDHLRLTASMGVSIYPDDGSNADTLLRNADAAMYRAKSEGRNNFAFYTE 616 >gi|330806706|ref|YP_004351168.1| diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374814|gb|AEA66164.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 700 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 8/157 (5%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+GL N +A+ ++ + L + D+D+FK+INDN+GH GD+V+ + Sbjct: 542 IDPLTGLPNRAAWSERLEHEVAQWQQHGNSLLLAMLDLDHFKRINDNYGHLAGDRVLKLI 601 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L F+ R GGEEF + A LA LR IE + P + + Sbjct: 602 ASVLRKRLRGGDFIARFGGEEFVLLVPNTPLVAGAKLAEALRLAIEACPFHFKGEP-VTV 660 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+ E ++ RADQALY AK SGRN V Sbjct: 661 TVSIGLTAFKPGEHSDLVLKRADQALYRAKNSGRNHV 697 >gi|260219441|emb|CBA26286.1| hypothetical protein Csp_E33740 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 530 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 14/180 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 S+L L ++ +SR D L+G+ N +S L + + LS++ D+D+FK Sbjct: 348 SLLLVLHEQVRKLESMSRTDSLTGIANRRKLDERLPLEMSRLARHADPLSLLLIDVDHFK 407 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 + ND +GHP GD + ++ L R GGEEF A L + EA LA + Sbjct: 408 KYNDLYGHPEGDVALKKVASVLAACSRQQDLAARFGGEEF--AILLPNTDEAGALAVAEK 465 Query: 201 KIIENSQINI---SSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255 ++E S++ I S S +++S G +P +I +AD+ALYVAK+ GR R Sbjct: 466 IMLEMSKLEIPHAQSPTSPRLSVSVGGTTWSEVQPGGAGALISQADKALYVAKRDGRMRA 525 >gi|144901349|emb|CAM78213.1| GGDEF domain protein [Magnetospirillum gryphiswaldense MSR-1] Length = 288 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 13/184 (7%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132 L G + S+ +E++ + L+ +D L+GL N + + L ++ LS+ Sbjct: 108 LSFGATAQSLEREVWKA------LATVDPLTGLSNRQSMRTHLMGERDRAIRQKLPLSLA 161 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK+IND FGH GDKV+ ++ L V R GGEEF G++ + Sbjct: 162 LADIDHFKKINDGFGHSQGDKVLRAVAAVLKATVRPYDVVYRYGGEEFLLCLPGTNAENG 221 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A++ +R I ++ G I +T + GIAE + I AD+ALY K GR Sbjct: 222 ALVLERIRAAIAALELTDDRGTPIPVTATFGIAEINADLSVDDAIELADRALYDGKLGGR 281 Query: 253 NRVV 256 N+VV Sbjct: 282 NKVV 285 >gi|82776357|ref|YP_402706.1| hypothetical protein SDY_1050 [Shigella dysenteriae Sd197] gi|309789418|ref|ZP_07684008.1| cellulose synthesis regulatory protein [Shigella dysenteriae 1617] gi|81240505|gb|ABB61215.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308922812|gb|EFP68329.1| cellulose synthesis regulatory protein [Shigella dysenteriae 1617] Length = 558 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|300920176|ref|ZP_07136625.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1] gi|300412798|gb|EFJ96108.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1] Length = 558 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|238923509|ref|YP_002937025.1| hypothetical protein EUBREC_1129 [Eubacterium rectale ATCC 33656] gi|238875184|gb|ACR74891.1| hypothetical protein EUBREC_1129 [Eubacterium rectale ATCC 33656] Length = 1021 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 26/172 (15%) Query: 106 IDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +D L+G NH AF S + KL V D+D FK +ND GH VGD+V++ Sbjct: 143 LDSLTGTYNHLAFENKCTSLIRQKGTKLLFVMLDVDDFKIVNDTLGHNVGDRVLSQTGQV 202 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILANDLRKII----ENSQINISS 212 L G VGRLGG+EFAA G + +A L+ L+ II ++ I +++ Sbjct: 203 LKEAVGANGIVGRLGGDEFAAIVFGLEDSDAVDEFCVKLSGRLKNIIFDMEYSASIGMTT 262 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G +T + Y ADQA+Y +K+ G+NR+ F+ I N Sbjct: 263 GDDRELT-------------FKDLYYEADQAMYYSKRQGKNRISFFNSIRKN 301 >gi|145298745|ref|YP_001141586.1| GGDEF/EAL protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851517|gb|ABO89838.1| GGDEF/EAL protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 625 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 6/158 (3%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GLLN + SL +Y + ++VF D+D FK +NDN+GH GD+++ ++ +L Sbjct: 221 DSLTGLLNRYGLMKSLEAYCGMGGRFALVFMDLDNFKLVNDNYGHKAGDRLLERVAGRLK 280 Query: 164 VVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 V + + RLGG+EF A L S A +A DL + +S P + I S Sbjct: 281 QVCPRDVELARLGGDEFTALVPLAHSSDRAQEVA-DLMLSQMTKPLQLSGVPEVTIGGSI 339 Query: 223 GIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 GIA + T+I RAD A+Y AK+ GR R F+ Sbjct: 340 GIAIYPDDADDGDTLITRADMAMYQAKQMGRLRWQRFT 377 >gi|24375197|ref|NP_719240.1| extracellular solute-binding protein [Shewanella oneidensis MR-1] gi|24349982|gb|AAN56684.1|AE015804_6 extracellular solute-binding protein, family 3/GGDEF domain protein [Shewanella oneidensis MR-1] Length = 461 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 6/170 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFG 147 ++L + ++++ L++ D L+G+ N F + L + L+++ FDID FK IND +G Sbjct: 289 RQLEDANHKLTLLAQTDSLTGIHNRHYFFNQLSDTQDLASSLTLIVFDIDDFKSINDTYG 348 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I ++ + V M R+GGEEFA A S Q + LA + + I + Sbjct: 349 HSAGDNAICLITTCVREVLEPEMQFARIGGEEFAILARDKSAQASQQLAKRICQQIAQKK 408 Query: 208 INISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVV 256 + ++S I +T+S G A + P + + AD +Y AK+ G+N+ V Sbjct: 409 LPLASNTLISLTVSLGCA--FYPTPDNPFTLNAADSLMYEAKRKGKNQAV 456 >gi|88799699|ref|ZP_01115274.1| GGDEF domain protein [Reinekea sp. MED297] gi|88777593|gb|EAR08793.1| GGDEF domain protein [Reinekea sp. MED297] Length = 315 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 10/178 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 L++L S +S++++ D L+ + N FI ++ Y S D+D FK I Sbjct: 131 LQQLESSVETLSEIAQTDELTHVANRRGFIQTVERELDRCRRYETPASFALLDLDLFKPI 190 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRK 201 ND +GH VGD+ + ++D + +GR+GG+EF A L +EQE+A+ + + +R Sbjct: 191 NDRYGHQVGDQALIHVADVVSSHLRPYDTLGRIGGDEF-AIFLRETEQESAVDVCDRIRL 249 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +E+S I + P + + +S G+ R + + AD ALY AK GRN VV F Sbjct: 250 AVESSPFLIENQPVV-LRLSFGVTTRTNATGFEQLYKEADIALYRAKSRGRNCVVLFD 306 >gi|150389941|ref|YP_001319990.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus metalliredigens QYMF] gi|149949803|gb|ABR48331.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus metalliredigens QYMF] Length = 330 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 103 LSRIDCLSGLLNHSAFISSLGS----YNEK--------LSIVFFDIDYFKQINDNFGHPV 150 LS ID LSGL NH F L Y + S++ FD+D FK IND GH + Sbjct: 166 LSAIDSLSGLYNHRHFFEELNKAFELYTRQKEEGSSHGFSVILFDVDNFKVINDKHGHLM 225 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI + + + + R GG+EFA +S ++A +A +R I+N+ I Sbjct: 226 GDVVIRQIGEIMKRNTRSTDSCFRYGGDEFAILLPNTSIEDARRIAEKMRVAIKNTAI-A 284 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S + IT+S G+A C + + + ++D+ LY +K +G+N V Sbjct: 285 SEHSELKITVSLGVASCCEAKSVKDLFRKSDEKLYCSKNTGKNMV 329 >gi|331653368|ref|ZP_08354373.1| cellulose synthesis regulatory protein [Escherichia coli M718] gi|331049466|gb|EGI21538.1| cellulose synthesis regulatory protein [Escherichia coli M718] Length = 564 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|227820812|ref|YP_002824782.1| putative transmembrane response regulator protein with GGDEF domain [Sinorhizobium fredii NGR234] gi|227339811|gb|ACP24029.1| putative transmembrane response regulator protein with GGDEF domain [Sinorhizobium fredii NGR234] Length = 454 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 11/189 (5%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIV 132 + LL S + EL + R+ +L+R D L+G+ N + +L G +++ Sbjct: 257 TFLLELRDRSRVAELADANARLERLARTDPLTGISNRRWMMETLDHLWSDGMERRGCAML 316 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID FK +ND GH GD+ + ++ + V V R GGEEF G E+E Sbjct: 317 MCDIDEFKNLNDRLGHAEGDRCLVKVAGIIQSSVRRNRDHVARYGGEEFLIVLPGVDERE 376 Query: 192 AAILANDLRKIIENSQI-NISSGPSIHITISAGIA-ERCHKE--PISTIIYRADQALYVA 247 A + +R +E + + N +S ++T+S G+A +R E P + +AD ALY+A Sbjct: 377 AIAMGERIRGSVEAASLPNPASRVLPYVTLSIGVAAQRPGDEIIPPERLQNQADAALYLA 436 Query: 248 KKSGRNRVV 256 K++GRNRVV Sbjct: 437 KQAGRNRVV 445 >gi|297584311|ref|YP_003700091.1| response regulator receiver modulated diguanylate cyclase [Bacillus selenitireducens MLS10] gi|297142768|gb|ADH99525.1| response regulator receiver modulated diguanylate cyclase [Bacillus selenitireducens MLS10] Length = 454 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 13/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 RI + +D L+G N + + L + S+ DID+FK++ND +GH G Sbjct: 143 RIDKAVLVDELTGTFNRTYMKTKLHEMIAWYKRTEDPGSVAILDIDHFKKVNDRYGHATG 202 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ +D + V R GGEEF + ++A + +RK +E++ + Sbjct: 203 DQVLKTFADIMREETRESDIVCRYGGEEFVVLLPNTCPEDAETVIERVRKHVESTPHD-- 260 Query: 212 SGPSI-HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 SG I H+T S GI +P ++++ADQALY AK GRNR+ F Sbjct: 261 SGEGIFHVTFSTGITFISSGDADP-EQLVHQADQALYQAKNDGRNRIRHFD 310 >gi|15831948|ref|NP_310721.1| hypothetical protein ECs2694 [Escherichia coli O157:H7 str. Sakai] gi|168752213|ref|ZP_02777235.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4113] gi|168758269|ref|ZP_02783276.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4401] gi|168778100|ref|ZP_02803107.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4196] gi|168801731|ref|ZP_02826738.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC508] gi|195939262|ref|ZP_03084644.1| hypothetical protein EscherichcoliO157_23048 [Escherichia coli O157:H7 str. EC4024] gi|208810635|ref|ZP_03252511.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4206] gi|208816680|ref|ZP_03257800.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4045] gi|209398052|ref|YP_002271072.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4115] gi|254793606|ref|YP_003078443.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. TW14359] gi|291283132|ref|YP_003499950.1| Cellulose synthesis regulatory protein [Escherichia coli O55:H7 str. CB9615] gi|20140592|sp|Q8XB92|YEDQ_ECO57 RecName: Full=Cellulose synthesis regulatory protein gi|13362162|dbj|BAB36117.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187766826|gb|EDU30670.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4196] gi|188013902|gb|EDU52024.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4113] gi|189354892|gb|EDU73311.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4401] gi|189376152|gb|EDU94568.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC508] gi|208725151|gb|EDZ74858.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4206] gi|208731023|gb|EDZ79712.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4045] gi|209159452|gb|ACI36885.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4115] gi|209766718|gb|ACI81671.1| hypothetical protein ECs2694 [Escherichia coli] gi|209766720|gb|ACI81672.1| hypothetical protein ECs2694 [Escherichia coli] gi|209766722|gb|ACI81673.1| hypothetical protein ECs2694 [Escherichia coli] gi|209766724|gb|ACI81674.1| hypothetical protein ECs2694 [Escherichia coli] gi|209766726|gb|ACI81675.1| hypothetical protein ECs2694 [Escherichia coli] gi|254593006|gb|ACT72367.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str. TW14359] gi|290763005|gb|ADD56966.1| Cellulose synthesis regulatory protein [Escherichia coli O55:H7 str. CB9615] gi|320647162|gb|EFX15995.1| putative diguanylate cyclase YedQ [Escherichia coli O157:H- str. 493-89] gi|320652447|gb|EFX20745.1| putative diguanylate cyclase YedQ [Escherichia coli O157:H- str. H 2687] gi|320658049|gb|EFX25811.1| putative diguanylate cyclase YedQ [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658620|gb|EFX26314.1| putative diguanylate cyclase YedQ [Escherichia coli O55:H7 str. USDA 5905] Length = 564 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|126463917|ref|YP_001045030.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029] gi|126105728|gb|ABN78258.1| diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides ATCC 17029] Length = 325 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 9/163 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q++ D L+G + +++++ + +IV FD+D+FK IND GH VGD Sbjct: 160 LRQIALSDALTGAMTRRGWLAAVEKEMARGARQGTQAAIVLFDVDHFKTINDTHGHAVGD 219 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+ + ++ G +GR+GGEEFA + EA LA LR+ ++ I + + Sbjct: 220 AVLQALTRRCLLHLGPADALGRIGGEEFAVLVPDAGLPEAMELAERLRRSFSDAPIEV-A 278 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254 G ++ +T S G+ + + AD+ LY AK +GRNR Sbjct: 279 GHALRVTASFGVQGLDGDTGTAGSWLAAADRRLYEAKAAGRNR 321 >gi|325914450|ref|ZP_08176796.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325539340|gb|EGD10990.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 326 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 15/178 (8%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSL---------GSYNEKLSIVFFDIDYFKQIND 144 F +Y + ++ D L+GL N F + N+++ + DID+FK++ND Sbjct: 135 FQNYRSLLDDAQRDALTGLRNRKTFDDVILRLFAGGADAPANDQVWLGIVDIDHFKRVND 194 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH GD+V+ ++ + F + R GGEEF G A L R + Sbjct: 195 TFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDVAVSLFERFRLAVA 254 Query: 205 NSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 P + +T+S GI E H IS ++ AD+ALY AK+ GRNR V +S++ Sbjct: 255 EHVF-----PQVGQVTLSTGIVELTHGRLISQLLDEADKALYWAKQHGRNRAVVYSEL 307 >gi|303246773|ref|ZP_07333050.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] gi|302491790|gb|EFL51670.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] Length = 531 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 16/171 (9%) Query: 98 NRISQLSRI---DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 RI + R+ D L+GL N +++ S + D+D+FK +ND G Sbjct: 355 GRIEEAERLSVQDALTGLYNRRFLFSGGMKLLAASQRSGRPCSCLMLDVDHFKTVNDTHG 414 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+ L L V R GGEEFA G+ +AA+LA R + + Sbjct: 415 HTAGDQVLVHLGRVLSGCVRKSDLVARYGGEEFAVLLTGADVAQAAMLAERFRHALSGAP 474 Query: 208 INISSGPSIHITISAGIAE-RCHKE----PISTIIYRADQALYVAKKSGRN 253 + + ++ +T+S G+A R E P+ ++ RAD+ALYVAK +GRN Sbjct: 475 CMVEN-RALVVTVSIGVAALRDQVEYGETPLDDLLARADKALYVAKAAGRN 524 >gi|293608824|ref|ZP_06691127.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829397|gb|EFF87759.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325121409|gb|ADY80932.1| two-component system, PleD related family, response regulator [Acinetobacter calcoaceticus PHEA-2] Length = 420 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 90/173 (52%), Gaps = 10/173 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFFDIDYFKQINDN 145 L I + + LS+ D L+ + N F + EK L+++F DID+FK ND Sbjct: 237 LRIEASELLHLSQQDALTNISNRRTFDEMFDFFYYRAKQEKRPLAVLFIDIDFFKNYNDF 296 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH +GDKVI+ ++ + FV R GGEEF + Q A +A ++ K IE Sbjct: 297 YGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPKTPAQGAYAVAANIYKAIER 356 Query: 206 SQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I + +S S H+TIS G + K +I+ ADQALY AK+ GRN++ Sbjct: 357 QAIPHAASLVSKHVTISLGFTVYTEGFKVNQEKLIHAADQALYRAKQLGRNQI 409 >gi|258620822|ref|ZP_05715857.1| sensory box/GGDEF family protein [Vibrio mimicus VM573] gi|258587020|gb|EEW11734.1| sensory box/GGDEF family protein [Vibrio mimicus VM573] Length = 628 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 20/175 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ K+ + DID+FK+IND FGH Sbjct: 459 NRLRELSEKDALTDLWNRRKFDQAIHLECAKVRRYPNLAQTCLAIVDIDHFKRINDKFGH 518 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ +++ + F+ R+GGEEFA +S +EA + N +R I ++Q Sbjct: 519 SEGDRVLRGVANSIQEQLRESDFIARIGGEEFAIIFPYTSIEEAERVLNRVRLYIASTQP 578 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIE 262 + +TIS G+ + C I Y RAD ALY +K SGRN++ + E Sbjct: 579 H-------DVTISGGVTDLC---AIPDQSYKRADLALYESKSSGRNQISILTQAE 623 >gi|213585868|ref|ZP_03367694.1| hypothetical protein SentesTyph_33212 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 182 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 10/163 (6%) Query: 107 DCLSGLLNHSAFISSLGS----YNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N A Y E S++ D+DYFK +ND FGH GD+V++ + Sbjct: 13 DPLTRLYNRGALFEKASRLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAA 72 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + GR+GGEEF G+++ +A +A +R+ I + +I ++ ++ I+ Sbjct: 73 GLIGSTIRAHDIAGRVGGEEFCIVLPGATKAQALQIAERIRQRINDKEILVTKSTTLRIS 132 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S GI AE + AD+ LY AK+SGRNR +C SD Sbjct: 133 ASMGISSAEEYGDYDFEQLQSLADKRLYYAKQSGRNR-ICASD 174 >gi|114154898|sp|Q32HJ0|YEDQ_SHIDS RecName: Full=Cellulose synthesis regulatory protein Length = 564 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|42522950|ref|NP_968330.1| GGDEF domain-containing protein [Bdellovibrio bacteriovorus HD100] gi|39574146|emb|CAE79323.1| GGDEF domain protein [Bdellovibrio bacteriovorus HD100] Length = 408 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 9/158 (5%) Query: 105 RIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 R D L+G N ++ + Y + ++++ DID+FK+IND++GH +GD V+ Sbjct: 239 RKDHLTGAHNRRSYDEQIRRYLQLHEIDKDPMTLIIMDIDFFKKINDSYGHDIGDFVLQE 298 Query: 158 LSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + F F+ RLGGEEFA G Q A +A + I ++ + I Sbjct: 299 CVRLIQESFSREEDFIARLGGEEFAVILPGCDAQAAVRMAEEAMNRI-RKEVFVHEKFEI 357 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 T+S GIAE E + RAD+ALY +K++GRN+ Sbjct: 358 RFTVSLGIAEVMPGEKADALYKRADEALYESKQTGRNK 395 >gi|116623704|ref|YP_825860.1| response regulator receiver modulated diguanylate cyclase [Candidatus Solibacter usitatus Ellin6076] gi|116226866|gb|ABJ85575.1| response regulator receiver modulated diguanylate cyclase [Candidatus Solibacter usitatus Ellin6076] Length = 325 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 87/181 (48%), Gaps = 9/181 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 + +EL + + + + D L+GLLN ++ + L +S++ D+D FK Sbjct: 143 DLQEELLKAREALREQATHDGLTGLLNRTSILEKLDDELSRAARDGSSVSVLMVDLDRFK 202 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND GH GD V+ S +L VGR GGEEF G + A + A LR Sbjct: 203 SVNDTQGHLAGDAVLREASSRLRSASRRYDSVGRYGGEEFLVVLPGCEKAAAELQAERLR 262 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I + S P + +T S G+A H P +I AD ALY AK GRNRVV ++ Sbjct: 263 EAIGGTPFRADSRP-LAMTCSIGLACSSHCAP-EDLIREADDALYQAKAGGRNRVVAHTE 320 Query: 261 I 261 + Sbjct: 321 L 321 >gi|320668518|gb|EFX35345.1| putative diguanylate cyclase YedQ [Escherichia coli O157:H7 str. LSU-61] Length = 558 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|189405270|ref|ZP_03007744.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC869] gi|189371044|gb|EDU89460.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC869] Length = 558 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|288958709|ref|YP_003449050.1| two-component response regulator modulated diguanylate cyclase [Azospirillum sp. B510] gi|288911017|dbj|BAI72506.1| two-component response regulator modulated diguanylate cyclase [Azospirillum sp. B510] Length = 464 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 9/176 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 + L +Y + ++ D L+G+ N + L E+ +S++ FDID+FK +N Sbjct: 280 ERLRSNYEQSLSMALTDSLTGVFNRRYVNAHLPRLLERAIDSHKPVSVLMFDIDHFKVVN 339 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GD+V+ +S + T V RLGGEEF + + A I+A LR I Sbjct: 340 DTYGHAIGDEVLREVSARSSRNLRTFDLVARLGGEEFIVILPDTDGEAALIVAERLRSRI 399 Query: 204 ENSQINISSGP-SIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ +SS I++T+S GI+ + +I RAD+ALY AK+SGRN V+ Sbjct: 400 ADTPFAVSSERGEINVTVSIGISIGGRLGDTAEGLIRRADEALYEAKRSGRNCVIA 455 >gi|89108787|ref|AP_002567.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr. W3110] gi|90111360|ref|NP_416465.2| predicted diguanylate cyclase [Escherichia coli str. K-12 substr. MG1655] gi|170081599|ref|YP_001730919.1| diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B] gi|238901160|ref|YP_002926956.1| putative diguanylate cyclase [Escherichia coli BW2952] gi|253773096|ref|YP_003035927.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|20140530|sp|P76330|YEDQ_ECOLI RecName: Full=Probable diguanylate cyclase YedQ; Short=DGC; AltName: Full=Cellulose synthesis regulatory protein gi|1736626|dbj|BAA15784.1| predicted diguanylate cyclase [Escherichia coli str. K12 substr. W3110] gi|87082007|gb|AAC75022.2| predicted diguanylate cyclase [Escherichia coli str. K-12 substr. MG1655] gi|169889434|gb|ACB03141.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B] gi|238862233|gb|ACR64231.1| predicted diguanylate cyclase [Escherichia coli BW2952] gi|253324140|gb|ACT28742.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448932|gb|ACX39354.1| diguanylate cyclase [Escherichia coli DH1] Length = 564 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|298528055|ref|ZP_07015459.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] gi|298511707|gb|EFI35609.1| diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] Length = 486 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 3/135 (2%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS++ D+D+FK +ND +GH GD V+ + + LV F R GGEEF ++ Sbjct: 345 LSLIMLDLDHFKTLNDTYGHVTGDMVLRKIGEILVDTVRETDFPARYGGEEFVILLPETT 404 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYV 246 E++A +L +R+ I ++ + G IT S G+A + P T++ +ADQALY+ Sbjct: 405 EEQAWLLGQRIRQKIGQTEFEV-QGKKFSITASLGVASIKPGPLTPKDTLVEQADQALYL 463 Query: 247 AKKSGRNRVVCFSDI 261 +K +GRN V +D+ Sbjct: 464 SKFNGRNMVCTSADV 478 >gi|209548401|ref|YP_002280318.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534157|gb|ACI54092.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 622 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 9/166 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L+ D L+G+ N F + + LS++ D+D+FK ND +GH G Sbjct: 447 KMKGLADTDALTGIANRRVFNEAISEEFARVRRAESSLSLLLIDVDHFKAYNDTYGHLEG 506 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D + + + L + P R GGEEFA G+ A LA LR + I Sbjct: 507 DNCLRMIGEILRSIAKRPSDLAARFGGEEFAILLPGTDRDGALRLARMLRSALHRRAIPH 566 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 S +T+S G+A C + + ++ ADQALY AKK GR+RV Sbjct: 567 SESSKAIVTVSIGVANICDRFATPAELVSAADQALYAAKKHGRDRV 612 >gi|157161011|ref|YP_001458329.1| hypothetical protein EcHS_A1625 [Escherichia coli HS] gi|157066691|gb|ABV05946.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli HS] Length = 296 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G + +I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEGHN-NI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|299531333|ref|ZP_07044743.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298720740|gb|EFI61687.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 473 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 6/136 (4%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + +I+ D+D+FKQIND+FGH GD+++ S L V VGR+GGEEFA A Sbjct: 337 GQPFAILMLDLDHFKQINDSFGHAGGDQLLRSFSQTLSQVLRAQDIVGRMGGEEFAVALP 396 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE----RCHKEPISTIIYRAD 241 A +A + + I ++ ++ ++ T+S G+ + H+ + ++ AD Sbjct: 397 KVDATAAQEIAKRINRAIRELRVPMNDK-TMSATVSIGLVHTSRLQAHQS-LDLLLQDAD 454 Query: 242 QALYVAKKSGRNRVVC 257 QALY AK SGR+RVV Sbjct: 455 QALYDAKASGRDRVVA 470 >gi|262193544|ref|YP_003264753.1| diguanylate cyclase [Haliangium ochraceum DSM 14365] gi|262076891|gb|ACY12860.1| diguanylate cyclase [Haliangium ochraceum DSM 14365] Length = 303 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 9/172 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y I +++ ID L+G+ N F I+ + L+++ FDID+FKQIND GH Sbjct: 127 YEEIYRMTIIDGLTGVHNKRYFVEFLEREIARCARHQRPLTLLMFDIDHFKQINDTHGHL 186 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ +S +L + R GGEEFAA + +R+++ Sbjct: 187 TGDYVLKEMSRRLRERIRKEELLARYGGEEFAAVLPETDHVGGMTFGEQIRQLVGGEPFE 246 Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 G +TIS G+ + + I AD LY AK+SGRNRV+ + Sbjct: 247 Y-EGDRFQVTISVGVHTLYGQSLDVKGFIKHADDNLYRAKRSGRNRVIGMDN 297 >gi|254457390|ref|ZP_05070818.1| response regulator PleD [Campylobacterales bacterium GD 1] gi|207086182|gb|EDZ63466.1| response regulator PleD [Campylobacterales bacterium GD 1] Length = 292 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 87/159 (54%), Gaps = 15/159 (9%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + + S N+KLS++ DID+FK +ND GH GD V+ ++ Sbjct: 138 DQLTGLYNRNHLVLEGERKFSRAFRKNDKLSVMMIDIDHFKIVNDTHGHLTGDLVLKEVA 197 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L+ T F R GGEEF G S+++A A LRK IE ++N + I +T Sbjct: 198 SLLIQDNRTEDFSARFGGEEFIVVLDGCSKEDAKEKAETLRKKIE--ELNPA---DIKVT 252 Query: 220 ISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 S GI+E +KE S +++ AD ALY AK SGRN VV Sbjct: 253 ASFGISE-LNKEHNSFESLLRAADSALYSAKSSGRNCVV 290 >gi|116248992|ref|YP_764833.1| GGDEF domain-containing regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115253642|emb|CAK12035.1| putative transmembrane GGDEF domain regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 428 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 20/197 (10%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL------SI 131 + LL S L EL + +++ L+R D L+G+ N + + +L ++E L ++ Sbjct: 228 TFLLELRDRSRLAELTDANSQLELLARTDPLTGVANRRSMMETLHYFWSEDLKRTSGAAM 287 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF-----VGRLGGEEFAAAALG 186 + DID FK +NDN GH GD+ + ++ + + M V R GGEEF G Sbjct: 288 LMCDIDDFKHLNDNLGHAEGDRCLV----KVAGIIQSSMRDERDQVARYGGEEFLVFLPG 343 Query: 187 SSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIST---IIYRADQ 242 S EQEA ++A +R +E + + N +S +T+S G+A + + + +AD Sbjct: 344 SDEQEAGVIAERIRSRVEAASLPNPTSRVGPWVTVSIGVAILMQNSGLVSAEHMQRQADA 403 Query: 243 ALYVAKKSGRNRVVCFS 259 ALY+AKK+GRN VV + Sbjct: 404 ALYLAKKTGRNCVVVHA 420 >gi|325121080|gb|ADY80603.1| response regulator PleD [Acinetobacter calcoaceticus PHEA-2] Length = 423 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFF--DIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L F+ S+ EK+ + FF D+D+FKQ+NDN+GH +GD+ + Sbjct: 262 DELTSSLTRRQFLQSVRLLQEKVQKENKTSAFFMLDVDHFKQVNDNYGHQIGDRALQTCV 321 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + +GR GGEEFA ++++ A LA +R I I I I I Sbjct: 322 TTIQNILHPHDLLGRFGGEEFAIFIADTTKESAFELAEQIRIKISQQPIYIYGKLPIFIQ 381 Query: 220 ISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S GI + H+ I ++ AD ALY AK+ GRNRV Sbjct: 382 VSIGISLYSPSSHRA-IESLFKEADDALYQAKRQGRNRV 419 >gi|262164933|ref|ZP_06032671.1| sensory box/GGDEF family protein [Vibrio mimicus VM223] gi|262027313|gb|EEY45980.1| sensory box/GGDEF family protein [Vibrio mimicus VM223] Length = 628 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 20/175 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ K+ + DID+FK+IND FGH Sbjct: 459 NRLRELSEKDALTDLWNRRKFDQAIHLECAKVRRYPNLAQTCLAIVDIDHFKRINDKFGH 518 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ ++ + F+ R+GGEEFA + +EA + N +R I ++Q Sbjct: 519 SEGDRVLRGVATSIQEQLRESDFIARIGGEEFAIIFPYTLIEEAERVLNRVRLYIASTQP 578 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIE 262 + +TIS G+ + C PI Y RAD ALY +K SGRN++ + E Sbjct: 579 H-------DVTISGGVTDLC---PIPDQSYKRADLALYESKSSGRNQISILTKAE 623 >gi|167828385|ref|ZP_02459856.1| putative transmembrane transcriptional sensor regulator [Burkholderia pseudomallei 9] Length = 489 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 316 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 375 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 376 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 433 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I I+ ADQALY AK GRNRVV Sbjct: 434 HEGSEVGFVTVSVGVAVWHPDGASAPHIDAIVEAADQALYQAKADGRNRVV 484 >gi|189424637|ref|YP_001951814.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] gi|189420896|gb|ACD95294.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] Length = 631 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 17/174 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 E + I +L+ D L+GL N + ++ G YNE ++I+F D+D FK++ND Sbjct: 181 ERRAAAEEIERLAFFDSLTGLPNRVLLKDRLAQLLTRAGRYNEMVAILFIDLDRFKEVND 240 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAILANDL 199 GH GD+++ +S++L + V RLGG+EF G +E++ AA L L Sbjct: 241 TLGHGTGDQLLQVVSERLTACLRSCDTVARLGGDEFVVLLPGITERDCVGDIAAKLLQSL 300 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 K ++ + + SI I++ + +ST+ AD A+Y AK+ GRN Sbjct: 301 CKPVQLDAREVFTSGSIGISLWP-----IDGDSVSTLFKNADTAMYHAKEQGRN 349 >gi|113969504|ref|YP_733297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] gi|113884188|gb|ABI38240.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] Length = 878 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 10/174 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148 S +++ L+ D L+ L N + L N +L+ VF D+D FK IND+FGH Sbjct: 444 SEAQLAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRLNAQLATVFIDVDLFKHINDSFGH 503 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207 +GD+++ L+ +L + R+GG+EF A G S ++AA N LR++ E Sbjct: 504 SIGDEMLVELAKRLRSQLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQVFEQPF 563 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +S+G + +T S G++ T++ AD A+Y AK GRN +++ Sbjct: 564 V-VSTGDHLRLTASMGVSIYPDDGSNADTLLRNADAAMYRAKSEGRNNFAFYTE 616 >gi|23006783|ref|ZP_00048946.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 308 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 8/199 (4%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 V++ +++L + G L+ +++LSR D L+GL N F + Sbjct: 86 VVVLCGLTVLFSLLLGQQLRRSTAMQAELTRLSRTDSLTGLPNRRHFEEFFERAWKAAAR 145 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA 183 + L+++ D+D+FK ND FGH VGD V+ ++ L P R+GGEEF Sbjct: 146 ERKPLALLIVDVDHFKGYNDRFGHAVGDTVLKGIAHSLTASLHRPQDLPARVGGEEFVVL 205 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 G+ A +A + + + S +T+S G+A K + RAD + Sbjct: 206 LPGTDRAGALQVAERIHAAVAGFALPSSGIACGTLTVSIGLAVGNGKGATRDLYARADAS 265 Query: 244 LYVAKKSGRNRVVCFSDIE 262 LY AK+ GRN+ C + + Sbjct: 266 LYEAKRGGRNQTKCADEAD 284 >gi|332308438|ref|YP_004436289.1| periplasmic/7TM domain sensor diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175767|gb|AEE25021.1| periplasmic/7TM domain sensor diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 631 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 98/190 (51%), Gaps = 20/190 (10%) Query: 92 ELFISYNRISQLSR-------IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 EL I+ +S+++R +D L+G+ N F + +L + DID Sbjct: 443 ELEIALRELSEINRELEEKNTLDALTGIRNRRYFDKKYLAEVRRSRRERTELVVAMIDID 502 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILA 196 +FK++ND GH VGD I F++++L P V R GGEEF+ + Q A L Sbjct: 503 HFKKVNDEHGHLVGDDCIKFVAERLKKTLKRPSDDVCRYGGEEFSVIMPSTDIQGAHDLL 562 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254 + LR I+N+ + S+G ++++T+S G+A ++ +I ADQ LY AK +GRN Sbjct: 563 DHLRLEIQNTPV-YSAGVAVNLTVSIGLASAIMDPQQSEDVLIGFADQLLYQAKNNGRNC 621 Query: 255 VVC--FSDIE 262 +V F D E Sbjct: 622 IVAQKFPDSE 631 >gi|316933799|ref|YP_004108781.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315601513|gb|ADU44048.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 405 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 106 IDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +D L+GLLN F + + + E +++ D+D+FK IND+FGH VGD V+ + Sbjct: 249 LDHLTGLLNRRGFEAEIAAPMRRAPEGAALILCDVDHFKSINDSFGHDVGDVVLQEIGAI 308 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L VGR GGEEFA +S +A A LR+ I NS+ I S +T S Sbjct: 309 LRRTARKGDLVGRWGGEEFAVFLPDASRSDAVECAERLRQTIANSR--IPGLDSRSVTAS 366 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+A + + AD LY+AK +GR+R V Sbjct: 367 FGVATIREVGDWAALYKLADSRLYLAKAAGRDRTV 401 >gi|262173913|ref|ZP_06041590.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451] gi|261891271|gb|EEY37258.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451] Length = 628 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 20/175 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ K+ + DID+FK+IND FGH Sbjct: 459 NRLRELSEKDALTDLWNRRKFDQAIHLECAKVRRYPNLAQTCLAIVDIDHFKRINDKFGH 518 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ +++ + F+ R+GGEEFA +S +EA + N +R I ++Q Sbjct: 519 SEGDRVLRGVANSIQEQLRESDFIARIGGEEFAIIFPYTSIEEAERVLNRVRLYIASTQP 578 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIE 262 + +TIS G+ + C I Y RAD ALY +K SGRN++ + E Sbjct: 579 H-------DVTISGGVTDLC---AIPDQSYKRADLALYESKSSGRNQISILTQAE 623 >gi|209919377|ref|YP_002293461.1| hypothetical protein ECSE_2186 [Escherichia coli SE11] gi|209912636|dbj|BAG77710.1| conserved hypothetical protein [Escherichia coli SE11] Length = 564 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKMCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|149378217|ref|ZP_01895932.1| diguanylate cyclase [Marinobacter algicola DG893] gi|149357507|gb|EDM46014.1| diguanylate cyclase [Marinobacter algicola DG893] Length = 573 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 14/189 (7%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEK 128 T++ L + + + +++ + +++L+RID L+GL N +L N Sbjct: 378 TMTDTLAHSTRELERKVAQRTDELNRLARIDALTGLKNRRGLDEALDEEIQRAKRQNNTG 437 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +++ DID+FK IND GH GD ++ ++ L GR GG+EF Sbjct: 438 FGLIWLDIDHFKAINDELGHQAGDDILCRVALWLKAGVRPYDHPGRWGGDEFVVVLSPCD 497 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247 E +A +R+ IE +I +G + +++ + C + + TI+ +ADQALY Sbjct: 498 EDTLCQIAARIRETIERD--SIRTGTPVTVSVGGYL---CQPGDDVDTILRQADQALYRV 552 Query: 248 KKSGRNRVV 256 K+ GRN+V+ Sbjct: 553 KQQGRNKVL 561 >gi|118593567|ref|ZP_01550944.1| GGDEF domain protein [Stappia aggregata IAM 12614] gi|118433785|gb|EAV40445.1| GGDEF domain protein [Stappia aggregata IAM 12614] Length = 307 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 15/244 (6%) Query: 24 PHTFMIYFSIFFSIFIATV----IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITIS 79 P +++ + + +F T+ I + + + GL L+ ++ ++LV I + IS Sbjct: 61 PVPALLWCGLVYPVFPTTILTLCIGVWGLVILSNGLGDSASLQ---LDVMTLVSIRLGIS 117 Query: 80 L--LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVF 133 L L + + + R+ L+ D L+ +LN +AF L +++ Sbjct: 118 LVALAPIMLSCVTQNRNALVGRLQYLATHDQLTNVLNRNAFREEAARRLALGTSGFALLM 177 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D FK +ND GH GD V+ ++ +GR+GGEEFA + +A Sbjct: 178 VDLDDFKAVNDTHGHATGDTVLVNFVHRVKNTLPPGSLLGRMGGEEFAVLIPDCRQVDAV 237 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSG 251 A ++R+ + + G + +T S G+ E + + T++ AD+ Y+AKK G Sbjct: 238 AEAENIRQSVGTEPVPAGDGKEVRVTASLGVVAVEHGDADSLDTLLAEADRLCYLAKKRG 297 Query: 252 RNRV 255 RNRV Sbjct: 298 RNRV 301 >gi|77465514|ref|YP_355017.1| diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides 2.4.1] gi|77389932|gb|ABA81116.1| diguanylate cyclase with GAF sensor [Rhodobacter sphaeroides 2.4.1] Length = 326 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 9/163 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q++ D L+G + +++++ + +IV FD+D+FK IND GH VGD Sbjct: 161 LRQIALSDALTGAMTRRGWLAAVEKEMARGARQGTQAAIVLFDVDHFKAINDTHGHAVGD 220 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+ + ++ G +GR+GGEEFA + EA LA LR+ ++ I + + Sbjct: 221 AVLQALTRRCLLHLGPADALGRIGGEEFAVLVPDAGLPEAMELAERLRRSFSDAPIEV-A 279 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254 G ++ +T S G+ + + AD+ LY AK +GRNR Sbjct: 280 GQALRVTASFGVQGLDGDTGNAGSWLAAADRRLYEAKAAGRNR 322 >gi|331677837|ref|ZP_08378512.1| cellulose synthesis regulatory protein [Escherichia coli H591] gi|331074297|gb|EGI45617.1| cellulose synthesis regulatory protein [Escherichia coli H591] Length = 564 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|260221858|emb|CBA30840.1| hypothetical protein Csp_C25570 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 600 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 9/175 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L ++ R+ LS +D L+G+ N F + L + L++V D+D+FK+ N Sbjct: 419 RQLQVANERLEALSMVDGLTGIANRRHFDQVLHKEWTRLERAGQPLALVMLDVDWFKRYN 478 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+FGH GD+ + ++ + V V R GGEEF A G+ +A +A + Sbjct: 479 DHFGHQAGDECLRAVAQAISGVSRASDLVARYGGEEFVIIAPGTDGPQALQMAQRACDAV 538 Query: 204 ENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 + +T+S G+A + + ++ +AD ALY AK GRNRVV Sbjct: 539 RALGMPHPLAYEAVVTVSCGVAVTVPGPDDSLENLLGQADDALYEAKAQGRNRVV 593 >gi|229590226|ref|YP_002872345.1| putative GGDEF domain signaling protein [Pseudomonas fluorescens SBW25] gi|229362092|emb|CAY48994.1| putative GGDEF domain signalling protein [Pseudomonas fluorescens SBW25] Length = 388 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 12/164 (7%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153 ++ ++ D L+GL+N AF E+ L + D+D+FKQIND +GH GD+ Sbjct: 226 TRAAQTDELTGLMNRRAFFEHAQVLYEQCRHNRQPLCALMMDMDHFKQINDTYGHQAGDQ 285 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + + F GRLGGEEFA +S A +A L K I ++S Sbjct: 286 VLRQIGGVISASFRQADVYGRLGGEEFAVLLPNTSLDTARTIAEQLVKAIS----GLASE 341 Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P ++ S G+A + + ++ AD+ALY AK GRN+V Sbjct: 342 PVHGLSASLGVASTHTQDQDLHGLMNTADKALYRAKAQGRNQVA 385 >gi|288573662|ref|ZP_06392019.1| diguanylate cyclase with PAS/PAC sensor [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569403|gb|EFC90960.1| diguanylate cyclase with PAS/PAC sensor [Dethiosulfovibrio peptidovorans DSM 11002] Length = 565 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++ +++ ID L+G+LN F + L ++ FD+D FK +ND GH GD+ Sbjct: 400 KKLEKMASIDKLTGILNRQRFEFLLQEKMDRKRLPLCLIMFDLDRFKDLNDARGHLEGDR 459 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + S+ + GR GG+EF A L ++ I+A DLRK I ++ + G Sbjct: 460 ALVLASEAVSGRLRMGDLFGRWGGDEFMVA-LEQDLDKSLIVAEDLRKRICDALGDGFQG 518 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T S G+A + + + AD+ALY AKK GRNRVV F D Sbjct: 519 ----VTASFGLALWNGRASLENLSNMADEALYRAKKDGRNRVVVFDD 561 >gi|254457525|ref|ZP_05070953.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207086317|gb|EDZ63601.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 491 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 16/183 (8%) Query: 80 LLLGYISGSILKELFISYNRISQLS---RIDCLSGLLNHSA---FISSLGSYNEKLSIVF 133 LL+ +I +L +Y I +L D L+G+ N ++ F+ + + K +I+F Sbjct: 310 LLIYFIFTRYSNKLISAYENIQELEIAVDTDALTGINNRTSLDSFLKANVKHENKYAIIF 369 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DID+FK IND +GH VGD ++ L++ ++ F R GGEEF +S Q A Sbjct: 370 LDIDHFKNINDTYGHDVGDTILKELANIILKSIRLDDFFARWGGEEFVIVLKTNSIQNAV 429 Query: 194 ILANDLRKIIENSQINISSG---PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 KI +N + NI S SI +T S G+ + + ++ RAD+ LY AK + Sbjct: 430 -------KITKNIRENIHSTLFHNSIPVTCSFGVTMIDRPDDLDMVLKRADKLLYDAKDA 482 Query: 251 GRN 253 GR+ Sbjct: 483 GRD 485 >gi|85714378|ref|ZP_01045366.1| diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A] gi|85698825|gb|EAQ36694.1| diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A] Length = 761 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 13/169 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RIS L+R D L+ L N +F + S + +++F D+D FKQIND GHP G Sbjct: 319 RISHLARFDSLTDLPNRLSFRDEIERLLESPTDRSRLSALLFIDLDQFKQINDTLGHPCG 378 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQIN 209 D+++ ++D+L + FV R GG+EF + S E+ AA+ + ++ E +++ Sbjct: 379 DRLLCIVADRLRGMLRPEDFVARFGGDEFVVFQQNIQSPEEAAALSRRIVERLTERYEVD 438 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I S GIA ++ AD ALY AK GR CF Sbjct: 439 RH---LVEIGASIGIALTSPGATADNLLKHADMALYRAKADGRG-TFCF 483 >gi|254418028|ref|ZP_05031752.1| GGDEF domain protein [Brevundimonas sp. BAL3] gi|196184205|gb|EDX79181.1| GGDEF domain protein [Brevundimonas sp. BAL3] Length = 453 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 9/165 (5%) Query: 102 QLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N A + ++++ DID+FK +ND FGH GD+V Sbjct: 286 EMAVTDALTGLHNRRYMTGQLRALVGRAAHGGATVAVLVLDIDHFKSVNDGFGHDAGDEV 345 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +A + +L R+GGEEF G+S ++A I+A +R+ I ++ + G Sbjct: 346 LAEFAVRLATNVRAVDVPCRMGGEEFVVVMPGASLEDARIVAERIRRDIASAPFRVMGGK 405 Query: 215 S-IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 + ITIS G+A + ++ RAD+ +Y AK GRN+V+ Sbjct: 406 ELLTITISIGVAATTGAGDTPEALLKRADEGVYEAKAGGRNKVIA 450 >gi|186473821|ref|YP_001861163.1| diguanylate cyclase [Burkholderia phymatum STM815] gi|184196153|gb|ACC74117.1| diguanylate cyclase [Burkholderia phymatum STM815] Length = 511 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 9/166 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFG 147 S RI L+R D L+GL N F L S + ++ + D+D FK +NDN G Sbjct: 335 SEARILHLARHDPLTGLANRREFHDRLKLMLSAAPASAASRAAVFYLDLDGFKNVNDNLG 394 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+ ++ +L RLGG+EFA S+ A +A + +++ Sbjct: 395 HGAGDEVLTMVAARLEQTLRDGELAARLGGDEFAVIVRDSTPLVVATIARRIIRVVSRP- 453 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +++G ++ I S GIA + + +I RAD+ALY AK++G+ Sbjct: 454 YRLAAGRTVSIGTSIGIALSAPDDAVDALISRADEALYAAKQAGKG 499 >gi|120597606|ref|YP_962180.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|146294255|ref|YP_001184679.1| diguanylate cyclase [Shewanella putrefaciens CN-32] gi|120557699|gb|ABM23626.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|145565945|gb|ABP76880.1| diguanylate cyclase [Shewanella putrefaciens CN-32] gi|319427617|gb|ADV55691.1| diguanylate cyclase [Shewanella putrefaciens 200] Length = 362 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/247 (27%), Positives = 123/247 (49%), Gaps = 12/247 (4%) Query: 19 LESFSPHTFMIYFSIFFSIFIATVIFIANIF--LFYIGLTPFYGLEYILVENLSLVIISI 76 L + P I+ +F+ + A +I + + +++I P+Y ++ + + Sbjct: 114 LATIPPSFASIFKPLFYKLIQALIIIVFFLICDIWFIDYEPYYLYSDEMISLFRHINVLG 173 Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------L 129 +LL G +S + + + + + ++ D L+GL+N + + + + + Sbjct: 174 ACALLAG-VSYAYSQIVMSAITALRNVANTDELTGLINRRSLTALIDREAARTLRTHASM 232 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S+V DIDYFK+IND++GH GD V+ +++ L V V R GGEEF + Sbjct: 233 SLVLCDIDYFKRINDSYGHAAGDHVLVNVANLLQGVLREYDVVARWGGEEFLLLLPNTDI 292 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 EA +A LR+I+ S ++ +I +T++ G+A + ST+ RAD+ALY K+ Sbjct: 293 IEAMKVAERLREIVACSHLSFEE-QTIPVTMTLGVAVLGDENWHSTLA-RADEALYRGKR 350 Query: 250 SGRNRVV 256 GRN VV Sbjct: 351 QGRNCVV 357 >gi|308048602|ref|YP_003912168.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] gi|307630792|gb|ADN75094.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] Length = 381 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 11/169 (6%) Query: 98 NRISQLSR---IDCLSGLLN------HSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFG 147 NR L R D L+GL N H S N + L++V D+D+FK++ND +G Sbjct: 197 NRACNLERNALKDPLTGLYNRAFLQQHLMLTSERAKRNGQPLAVVMLDLDFFKRVNDRYG 256 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+V+A S +L + R GGEEF +S +EA + L + I+ Sbjct: 257 HGVGDRVLAAFSQRLNAGLRAGDLLARYGGEEFCLVLSQTSLEEAKTVLAKLHERIQAEP 316 Query: 208 INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ + I +T SAG+ + + ++ RAD L AK++GR+R Sbjct: 317 FDVGAEHPISLTFSAGVCVLQGQDDTPQALLERADHWLLHAKRAGRDRT 365 >gi|226358101|ref|YP_002787840.1| metal dependent phosphohydrolase [Deinococcus deserti VCD115] gi|226319744|gb|ACO47738.1| putative metal dependent phosphohydrolase [Deinococcus deserti VCD115] Length = 1152 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 + + SR D L+G+ N +L + + + LS++ DID+FK +ND F HPVGD Sbjct: 989 LQRQSREDGLTGVYNRRYIEEALATEHSRHRQTHRTLSLLMIDIDHFKAVNDKFSHPVGD 1048 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---SQIN 209 +V+ ++ VGR GGEEF ++ +A +A +R+++E +I+ Sbjct: 1049 EVLRRIAKLFKATCRAHDLVGRYGGEEFLIILPDTTVPQAIEVAERIRRLVEEYPWREIH 1108 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P +H+T+S G+ R ++ D+ LY AK GRNRV Sbjct: 1109 ----PKLHVTLSLGVCGRMDVANHERLLSLVDEKLYEAKHGGRNRV 1150 >gi|261254626|ref|ZP_05947159.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str. FRIK966] Length = 564 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|182417814|ref|ZP_02949128.1| ggdef/hd domain protein [Clostridium butyricum 5521] gi|237669067|ref|ZP_04529051.1| ggdef/hd domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378277|gb|EDT75809.1| ggdef/hd domain protein [Clostridium butyricum 5521] gi|237657415|gb|EEP54971.1| ggdef/hd domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 558 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 82/169 (48%), Gaps = 9/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + ID L+ L NH F SL N +S++F DIDYFK ND +GH G Sbjct: 186 KLENMINIDGLTELYNHRYFCDSLAEEIKIGEKENSPVSMIFIDIDYFKNYNDIYGHQKG 245 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210 D V+ + + G R GGEEFA ++E A +A LRK IEN+ Sbjct: 246 DYVLKKIGKIIKSSIGNQHISARYGGEEFAIILPDTTEDMAVNIAESLRKKIENTYFEGE 305 Query: 211 SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCF 258 + P+ +T+S G++ K +I AD ALY AK +NRV + Sbjct: 306 ENQPNGKLTVSMGVSVYPDKARSDIELIKSADDALYRAKFFYKNRVETY 354 >gi|168232352|ref|ZP_02657410.1| AdrA protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468530|ref|ZP_03074514.1| AdrA protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194454894|gb|EDX43733.1| AdrA protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333325|gb|EDZ20089.1| AdrA protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 370 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|70733599|ref|YP_257239.1| diguanylate cyclase [Pseudomonas fluorescens Pf-5] gi|68347898|gb|AAY95504.1| diguanylate cyclase, putative [Pseudomonas fluorescens Pf-5] Length = 727 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ L G + + L + D+D+FK+INDN+GH GDKV Sbjct: 565 QKALIDPLTGLPNRAAWSERLEHEVGQWQQHGNSLLLAMLDLDHFKRINDNYGHLAGDKV 624 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ L F+ R GGEEF + + LR IE + P Sbjct: 625 LKIIANVLRKRLRGSDFIARFGGEEFVLLLPNTPWPVGVRIVEALRAAIEACPFHFKGEP 684 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G++ + +I RADQALY AK +GRNRV Sbjct: 685 -VTITVSVGLSAFKAGDRSDLVIKRADQALYRAKDAGRNRV 724 >gi|56414460|ref|YP_151535.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168237493|ref|ZP_02662551.1| AdrA protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734843|ref|YP_002113415.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197363381|ref|YP_002143018.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|204927093|ref|ZP_03218295.1| AdrA protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|56128717|gb|AAV78223.1| adrA protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194710345|gb|ACF89566.1| AdrA protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197094858|emb|CAR60391.1| adrA protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197289544|gb|EDY28907.1| AdrA protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323758|gb|EDZ08953.1| AdrA protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 370 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|293415265|ref|ZP_06657908.1| cellulose synthesis regulatory protein [Escherichia coli B185] gi|291432913|gb|EFF05892.1| cellulose synthesis regulatory protein [Escherichia coli B185] Length = 564 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|283781774|ref|YP_003372529.1| diguanylate cyclase and metal dependent phosphohydrolase [Pirellula staleyi DSM 6068] gi|283440227|gb|ADB18669.1| diguanylate cyclase and metal dependent phosphohydrolase [Pirellula staleyi DSM 6068] Length = 779 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 2/142 (1%) Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 H+ ++ S S++ DIDYFK+INDNFGH GD+V+ + L V R Sbjct: 438 HATYVQSHRDRRLPFSLIICDIDYFKRINDNFGHQAGDEVLQSFAALLRRHTRPGDLVAR 497 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 GGEEF + A A +LR+ E ++ +++ + IT S G+ E + + Sbjct: 498 YGGEEFVLLCIDCDNTAATRRAEELRR--ELAEFPMAALGNKSITASFGVTELQNGDTPE 555 Query: 235 TIIYRADQALYVAKKSGRNRVV 256 T++ RAD+ALY AK+SGRN V+ Sbjct: 556 TMLRRADRALYQAKESGRNTVI 577 >gi|229162983|ref|ZP_04290939.1| Sensory box/GGDEF family protein [Bacillus cereus R309803] gi|228620389|gb|EEK77259.1| Sensory box/GGDEF family protein [Bacillus cereus R309803] Length = 431 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + +EK++++ FDID FK++ND +GH Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNVIRNDEKIALILFDIDNFKKVNDTYGHD 321 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 322 FGDLALVQLAELMKSKVEQQHVFARWGGEEFIILVTDTVEKEAFQVAESLRFFIETKQF- 380 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 381 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 426 >gi|209809304|ref|YP_002264842.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] gi|208010866|emb|CAQ81267.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] Length = 446 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 9/166 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++N +L + D ++G + L S++ DID+FK+IND +GH +GD+VI Sbjct: 284 NFNHRKKLVQFDRMTGFYRRDFYEKRLQKKTSH-SLLLIDIDHFKRINDTYGHKIGDEVI 342 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ +++ R GGEEF A ++ + AI A+ +R +IE +I Sbjct: 343 QEVAVRILNQIRPKDIAVRWGGEEFIVAFEPLTDDQLAIKADLIRAVIEKHEI-----KG 397 Query: 216 IHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I +TIS G+ R S RAD ALY +K+SGRN+V SD Sbjct: 398 IEVTISIGGVVSR--DTSFSYAYKRADAALYTSKESGRNKVTIVSD 441 >gi|206578608|ref|YP_002239482.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae 342] gi|206567666|gb|ACI09442.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae 342] Length = 379 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R+ ++ D L+G N +AF++ L L+++ D+DYFK+ ND++GH GD Sbjct: 215 QRLESIANRDALTGTANRRALNAFLAQLWEQKAPLALMMIDVDYFKRYNDHYGHQAGDDC 274 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 ++ ++ L + V V R GGEEF + G S A ++A +++ I ++ + + +S Sbjct: 275 LSSVAQVLKMAVRAEDDLVARYGGEEFVVSLPGVSLAHATVIAERIQQKIHDAALPHEAS 334 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S G+ P+ T+I RAD ALY AK GRN+ Sbjct: 335 AVAAVVTVSMGVVASDGTVPMETLIARADSALYQAKNKGRNQ 376 >gi|148557273|ref|YP_001264855.1| diguanylate cyclase [Sphingomonas wittichii RW1] gi|148502463|gb|ABQ70717.1| diguanylate cyclase [Sphingomonas wittichii RW1] Length = 419 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 95/203 (46%), Gaps = 19/203 (9%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 Y + L L +++ + Y+ G L E ++ + D L+G N A + + Sbjct: 218 YTYIVFLGLPAMTVGAGIFSLYLMGGDLAE------KLRLTAETDSLTGAPNRRA-VEAA 270 Query: 123 GSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 GS LSI D+D+FK+IND GH GD+V+ L+D G GR Sbjct: 271 GSRMMEEARATGRPLSIAICDVDHFKEINDLHGHGHGDEVLCRLTDLFRDQLGAADHYGR 330 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI- 233 GGEEF GS + A IL LR I QI + +T S G+A + I Sbjct: 331 FGGEEFVLLFPGSDAETARILVEALRTRIMAVQIGDL---PLRLTASFGVAAMGADDHIL 387 Query: 234 STIIYRADQALYVAKKSGRNRVV 256 + I+ RAD+ALY +K++GRNR Sbjct: 388 ADILKRADRALYASKENGRNRTT 410 >gi|15802390|ref|NP_288416.1| hypothetical protein Z3047 [Escherichia coli O157:H7 EDL933] gi|12516062|gb|AAG56970.1|AE005417_12 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 564 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + B L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHBTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLIXSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|83951362|ref|ZP_00960094.1| GGDEF [Roseovarius nubinhibens ISM] gi|83836368|gb|EAP75665.1| GGDEF [Roseovarius nubinhibens ISM] Length = 290 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 7/230 (3%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93 F++ + T + + L + + P ILV + +I+I++++ + Y G + + Sbjct: 13 LFAVVV-TACALTGVHLMQLVIYPPDLWRQILVTS---TVITISMAMPIAYFVGLQMAAV 68 Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++ D L+ + F +G + N L ++ DID+FK +ND +GH GD Sbjct: 69 ERLTAQLEHAVNHDALTATCSRLRFYEEVGKARNWPLMLIATDIDHFKGVNDQYGHQAGD 128 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + LV V R GGEEF +E EA A LR + + + Sbjct: 129 AALRQFAQCLVRNCREDDIVARFGGEEFIILLRAETEPEALATAERLRSWVAAREF-VLD 187 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 G +HIT S G+A I ++ +D ALY AK++GRNR VC D E Sbjct: 188 GHVVHITASFGVARAEDAASIDRAMHASDLALYRAKEAGRNR-VCAYDAE 236 >gi|260777430|ref|ZP_05886324.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260607096|gb|EEX33370.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 338 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 5/172 (2%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 ++ L + Q + D L+ L N +F + +L +K+ ++ DID+FK ND + Sbjct: 165 IQRLKTQLAEVQQDALFDGLTSLYNRRSFDNDLDTLCRSEQKICLILADIDHFKSYNDTY 224 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD VI ++ +L + + R GGEEFA + A A LR+ +E Sbjct: 225 GHLFGDAVIKGIAKRLQISSRDGIHAYRFGGEEFALIMPNKQLRIARQFAESLRRSVEKL 284 Query: 207 QI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I + SG + +IT S G+AE E ++II RAD+ LY AK+ GRNRV+ Sbjct: 285 SIKDRRSGKQVGNITASFGVAELQPGEMPNSIIERADKLLYEAKQLGRNRVM 336 >gi|256752477|ref|ZP_05493334.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter ethanolicus CCSD1] gi|256748612|gb|EEU61659.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter ethanolicus CCSD1] Length = 486 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 10/172 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +++ S D L+ N F +L +E +S++ FD+D FK IND +GH Sbjct: 315 YYEVTKKSITDPLTKTYNRRYFNDALMENIMRADETSEPVSLIMFDLDNFKLINDTYGHL 374 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ ++ ++ + V R GGEEFA + ++A ++A +R + + I Sbjct: 375 VGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRNEVSSRPIR 434 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259 G I++TI+ G+A+ K + +I AD+ALY KS GRN++ + Sbjct: 435 TDKG-DIYVTITGGVADYPEKADSAEKLISHADRALYAGGKSKGRNKIAIYE 485 >gi|205351698|ref|YP_002225499.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271479|emb|CAR36296.1| adrA protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626730|gb|EGE33073.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 370 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRHHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|197251011|ref|YP_002145365.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214714|gb|ACH52111.1| AdrA protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 370 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|58039152|ref|YP_191116.1| sensor histidine kinase [Gluconobacter oxydans 621H] gi|58001566|gb|AAW60460.1| Sensor histidine kinase [Gluconobacter oxydans 621H] Length = 401 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 85/163 (52%), Gaps = 7/163 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R +L D LSG N AF + L G +++ DID+FK IND GH VGD++I Sbjct: 217 RQQELILQDPLSGGSNRRAFQAWLENDGKICAHEALLMVDIDHFKSINDAHGHAVGDQII 276 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + P + R+GG+EF S E A+ LRK +++ + G + Sbjct: 277 IAMGRVCTDILYPPTVLFRIGGDEFVVVFQCDSLDEMLATAHRLRKAF-STETRLIGGGA 335 Query: 216 IHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256 + T+S G A C P + ++ +AD ALY+AK+SGRNRVV Sbjct: 336 VTATLSIG-AALCPGRGIPRTELLAQADNALYIAKQSGRNRVV 377 >gi|16763765|ref|NP_459380.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992228|ref|ZP_02573326.1| AdrA protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262292|ref|ZP_03162366.1| AdrA protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|7242806|emb|CAB77394.1| AdrA protein [Salmonella typhimurium] gi|16418888|gb|AAL19339.1| putative diguanylate cyclase/phosphodiesterase domain 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197240547|gb|EDY23167.1| AdrA protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329537|gb|EDZ16301.1| AdrA protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261245668|emb|CBG23464.1| adrA protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992090|gb|ACY86975.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156997|emb|CBW16480.1| adrA protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911416|dbj|BAJ35390.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225108|gb|EFX50169.1| Protein YaiC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128700|gb|ADX16130.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987333|gb|AEF06316.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 370 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|84391221|ref|ZP_00991552.1| GGDEF family protein [Vibrio splendidus 12B01] gi|84376510|gb|EAP93388.1| GGDEF family protein [Vibrio splendidus 12B01] Length = 352 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 18/166 (10%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDK 153 S+ + D L+G+LN A L ++ KLS+++ DIDYFK +ND +GH +GD Sbjct: 192 SEKAHRDELTGILNRHAIRDWLKMQSQQVKQGHGKLSMLYLDIDYFKSVNDKYGHQMGDH 251 Query: 154 VIAFLSDQLVV---VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 ++ S +VV + T V R GGEEF + EA A +R ++ + + + Sbjct: 252 ILREFS--MVVGSSISATDKLV-RWGGEEFIVFCPETDLGEAQRKAEKIRLLV-SQHLWV 307 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P +T S GIAE +E ++ I RAD+ALY AK SGRN+V+ Sbjct: 308 HGDP---LTCSIGIAE-MKQERVTETIARADEALYQAKHSGRNQVI 349 >gi|330953037|gb|EGH53297.1| response regulator, putative/diguanylate cyclase [Pseudomonas syringae Cit 7] Length = 302 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + L DID+FK++ND+ GHP+GD+VI L+ Sbjct: 130 DSLTGLYNHTHILQLLEDCCFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 189 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 L F+GR GGEEFA + Q A + +D+R+ ++I+ + P + Sbjct: 190 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHRVLDDIRQRF--AEIHYPAQPVDLFC 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRN+V Sbjct: 248 TFSAGVVSLGANDDSLSLASQADAALYCAKHAGRNQV 284 >gi|300022157|ref|YP_003754768.1| response regulator receiver modulated diguanylate cyclase [Hyphomicrobium denitrificans ATCC 51888] gi|299523978|gb|ADJ22447.1| response regulator receiver modulated diguanylate cyclase [Hyphomicrobium denitrificans ATCC 51888] Length = 456 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 76/164 (46%), Gaps = 10/164 (6%) Query: 102 QLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N +S LS++ DID+FK +ND GH GD V Sbjct: 290 ELSVTDSLTGLHNRRYMEGHLRTLVSEAIRTGRSLSMLVADIDHFKDVNDTHGHDAGDAV 349 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + S +L RLGGEEF + A + LR + + I G Sbjct: 350 LKEFSVRLKRNTRGVDLACRLGGEEFVIIMPDTDLDRAYQIGERLRACVAADEFTIDGGQ 409 Query: 215 SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+ +T S GIA E P ++ RAD ALY AK+ GRNRVV Sbjct: 410 SVRVTASVGIATLESPQDTP-ESMFKRADNALYKAKRRGRNRVV 452 >gi|78485130|ref|YP_391055.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78363416|gb|ABB41381.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2] Length = 502 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 12/159 (7%) Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 S ID L+ N F + L Y + +S++F+DID+FKQIND GH VGD+++ Sbjct: 346 SEIDELTQAYNRRYFNQKLRQLLHYQDNRHPVSVMFYDIDFFKQINDTHGHLVGDEILKS 405 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-I 216 LS + + + R GGEEFA + Q+A A +LR+ +E + P+ + Sbjct: 406 LSHFIRGHLRSEDILVRWGGEEFAVVLKEAHLQQAVEKAEELRQAVEE-----KTWPNDV 460 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +TIS + E + + ++ R D LY AK+SGRNRV Sbjct: 461 KMTISISVIELHENDNLKSLQARLDDLLYNAKESGRNRV 499 >gi|66046882|ref|YP_236723.1| GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63257589|gb|AAY38685.1| GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 308 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + + LS++ DID+FK++ND +GH GD V+ ++ L V R GGEEF Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + A ++ L + + N + S P++ +T+S G + E +++ RAD AL Sbjct: 235 SNTGADSAELIGQRLCQAVRNLEFRELS-PALTMTVSLGCSTLLPTETADSLLRRADNAL 293 Query: 245 YVAKKSGRNRVVCFS 259 YVAK+ GRNR+ S Sbjct: 294 YVAKREGRNRIAMAS 308 >gi|167916704|ref|ZP_02503795.1| diguanylate cyclase [Burkholderia pseudomallei 112] gi|217424330|ref|ZP_03455829.1| diguanylate cyclase [Burkholderia pseudomallei 576] gi|237509235|ref|ZP_04521950.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346] gi|254296646|ref|ZP_04964102.1| diguanylate cyclase [Burkholderia pseudomallei 406e] gi|157806512|gb|EDO83682.1| diguanylate cyclase [Burkholderia pseudomallei 406e] gi|217392795|gb|EEC32818.1| diguanylate cyclase [Burkholderia pseudomallei 576] gi|235001440|gb|EEP50864.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346] Length = 311 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + + D L+G+ N F S Y LS++ FD+D+FK IND FGH VG Sbjct: 144 KLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKTINDRFGHVVG 203 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ ++ V + GR GGEEFA +S EA +A +R+ I ++ I + Sbjct: 204 DNVLRVMAQRVADVVRSQDTFGRFGGEEFALLLPCTSLDEAMHVAEKIRQTIGSTPIE-A 262 Query: 212 SGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258 G + +T S G A T++ AD ALY AK+ GRN V F Sbjct: 263 EGVRVPVTASVGGAAAHAGALTHETLVNEADAALYRAKRQGRNCSVAF 310 >gi|315445287|ref|YP_004078166.1| diguanylate cyclase (GGDEF) domain-containing protein [Mycobacterium sp. Spyr1] gi|315263590|gb|ADU00332.1| diguanylate cyclase (GGDEF) domain-containing protein [Mycobacterium sp. Spyr1] Length = 612 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 14/190 (7%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE----KLSIV 132 I+ L + + E + Y L+ D L+GL N A +S L G E +S + Sbjct: 158 IASLFAQVQARVEAETQLRY-----LAEHDDLTGLNNRRALLSHLDGRLAEGQPGPVSAL 212 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 FFD+D K IND GH GD I L+++L + RLGG+EF G + EA Sbjct: 213 FFDLDRLKAINDYLGHTAGDWFIRVLAERLREGADPRALIARLGGDEFVVVPAGPMDGEA 272 Query: 193 A-ILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250 A +LA+ L+ ++ +++I G + T+S G+A ++ S ++ RADQA+ AK S Sbjct: 273 AELLAHHLQSTLKE-RVSI-DGEMLTRTVSIGVAVGIPGQDTTSDLLRRADQAVLTAKNS 330 Query: 251 GRNRVVCFSD 260 G NRV F++ Sbjct: 331 GGNRVTVFTE 340 >gi|283852505|ref|ZP_06369773.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio sp. FW1012B] gi|283572113|gb|EFC20105.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio sp. FW1012B] Length = 433 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 80/171 (46%), Gaps = 11/171 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 +L + + L+ +D L+ +N LG Y LS+V DID FK IND Sbjct: 256 DLELERRELLDLANLDPLTRAMNRRKLTEVLGDEAARAARYRSPLSVVLLDIDRFKAIND 315 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH VGD V+ L+ +L + R GGEEF A G + Q A LA LR + Sbjct: 316 THGHAVGDAVLVELAARLRAGLRQVDRLARYGGEEFVVVAPGINGQGAYDLAERLRLAVG 375 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + +T S G+A + ++ RAD+ALY AK GRN+V Sbjct: 376 DKEFAGVG----RVTASFGVAGHVPGQEPEAMLRRADEALYRAKNGGRNKV 422 >gi|242238650|ref|YP_002986831.1| diguanylate cyclase [Dickeya dadantii Ech703] gi|242130707|gb|ACS85009.1| diguanylate cyclase [Dickeya dadantii Ech703] Length = 371 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 10/176 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ ++S D ++ L N + L Y ++ D+D+FK INDNFGH V Sbjct: 188 RRLKEMSIHDGMTRLYNRQHWEQLLQNEFDICARYQRVATLALLDVDHFKTINDNFGHHV 247 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + LS+ L +GR GG+EF + EA ++ LR+ +E+ Q++ Sbjct: 248 GDDALLLLSNGLKSTLRQADIIGRFGGDEFGIVFPETRVDEARLVVERLREYLESVQLHH 307 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIENNT 265 + P + I ISAG+ + + R AD ALY AK GR VC + T Sbjct: 308 T--PLLRIGISAGLVQFSSEMSDHRAWMRAADMALYQAKNRGRGCSVCVDSLSAAT 361 >gi|290894266|ref|ZP_06557234.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071] gi|290556205|gb|EFD89751.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J2-071] Length = 375 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 15/190 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131 +LL+ Y I K + N +++ + D L+ L N F G + LS+ Sbjct: 184 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSL 242 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190 DID+FK+IND GH G+ V+A S L F R+GGEEFA + Sbjct: 243 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 302 Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 +AA++A+ R+ +E ++ N +SG +T+S G+A H ++ ADQALY A Sbjct: 303 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSHFSTTESLFEAADQALYQA 359 Query: 248 KKSGRNRVVC 257 K+SGRN++ Sbjct: 360 KQSGRNQIAV 369 >gi|152991282|ref|YP_001357004.1| two-component response regulator [Nitratiruptor sp. SB155-2] gi|151423143|dbj|BAF70647.1| two-component response regulator [Nitratiruptor sp. SB155-2] Length = 414 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 13/171 (7%) Query: 95 ISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 + +++I +L+ D L+G N + + +SI D+D+FKQIND FG Sbjct: 247 VQFHKIKELAIKDALTGCYNRYYLFDMGQKLFENFKRQQKPVSIAILDLDHFKQINDTFG 306 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENS 206 H +GD+V+ L FV R GGEEF S+++A I+ +RK + Sbjct: 307 HSIGDEVLRHFGQILQNSLRQGDFVVRYGGEEFVIFFGNCSKEDAKRIVEERIRKRVHED 366 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I G +++ S GI + +E ++ +I +AD+ LY+AKK+ R VC Sbjct: 367 CIMTDDGQNVYYNFSCGICD--SEEQLNQLIKKADEKLYMAKKT---RGVC 412 >gi|193215888|ref|YP_001997087.1| diguanylate cyclase [Chloroherpeton thalassium ATCC 35110] gi|193089365|gb|ACF14640.1| diguanylate cyclase [Chloroherpeton thalassium ATCC 35110] Length = 440 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 9/178 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 KE+ N ++Q+ D + L N F ++ +NE LS++ D+D FK N Sbjct: 259 KEVEEKTNELNQMVITDEKTKLFNFRHFKQEFLIEVARAKRFNEPLSLIMIDVDKFKHYN 318 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH +GD+V+ +S L R GGEEFAA + +EA +A +R I Sbjct: 319 DTNGHMLGDQVLIKVSALLKKECRETDVPARFGGEEFAALLPRTDAKEAFQVAERIRSSI 378 Query: 204 ENSQI-NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 E S+ N + P ++T S G+A +I AD+ALY AK++GRNRV +S Sbjct: 379 ETSEFENQKAQPGGNLTASLGVATFPFDAYDAEALIIAADEALYRAKENGRNRVEVYS 436 >gi|183222726|ref|YP_001840722.1| hypothetical protein LEPBI_I3382 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912758|ref|YP_001964313.1| GGDEF domain-containing protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777434|gb|ABZ95735.1| GGDEF domain protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781148|gb|ABZ99446.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 305 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 7/168 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N + +L+ +D L+ L N +F I+++ N + + DID+FK IND +GH + Sbjct: 136 NSLKRLAYMDELTMLPNRRSFADTLQKTIATVKRRNRESVLAVMDIDHFKVINDTYGHDI 195 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +++ V VGRLGGEEF ++ + A I+ + LR+ +E + I Sbjct: 196 GDLVLKKMANIFVDCLREEDTVGRLGGEEFGCILPDTTTEGATIVLDRLRESVETHRFFI 255 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++IT+S G + + ++ AD ALY AK GRNR+ + Sbjct: 256 FDNYYLNITLSIGYTKVHPIQKPEEVLKFADIALYQAKNHGRNRIQVY 303 >gi|71280694|ref|YP_267379.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71146434|gb|AAZ26907.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 626 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 1/129 (0%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++FFD DYFK +ND GH +GD+V+ L++ V VGR+GGEEF + Sbjct: 499 SLIFFDADYFKLVNDELGHNIGDQVLICLANIASNVIRKGDVVGRVGGEEFIILLPDTDI 558 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 A +AN L IE + +I S + T+SAG+ + +S ++++AD+ALY AK Sbjct: 559 DTALSIANRLLTNIEQYEWSIISN-DLTQTVSAGVVSYQGENDLSELLFKADKALYEAKA 617 Query: 250 SGRNRVVCF 258 +GRN + F Sbjct: 618 AGRNHIKTF 626 >gi|86145434|ref|ZP_01063765.1| sensory box/GGDEF family protein [Vibrio sp. MED222] gi|85837011|gb|EAQ55131.1| sensory box/GGDEF family protein [Vibrio sp. MED222] Length = 434 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 83/175 (47%), Gaps = 20/175 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSY--NEKLSIVFFDIDYFKQINDNFGH 148 N++ LS D LSG N F S + Y E+ + DID+FK+IND FGH Sbjct: 265 NKLRNLSEKDALSGCWNRRKFDLELRDECSRVSRYPTREQSCLAILDIDHFKRINDRFGH 324 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDK I ++ L FV R+GGEEF ++ QEA + N LR + Sbjct: 325 DYGDKAIQIVAQVLQRECRDTDFVARIGGEEFGVILPHTTPQEADYVLNRLRIAVSIEFD 384 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIE 262 N+ +TIS GI EP + Y+ AD ALY AK GRN V F D E Sbjct: 385 NV-------VTISGGITN-LTSEP--ALNYKCADLALYEAKAVGRNNVCLFLDSE 429 >gi|218670355|ref|ZP_03520026.1| diguanylate cyclase [Rhizobium etli GR56] Length = 169 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 5/131 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ FD+D+FK++ND FGH GD V+ + +F GR+GGEEFAA A S + Sbjct: 1 AVILFDLDHFKRVNDRFGHQAGDAVLTAFARMARQYIPNHIF-GRMGGEEFAAFAAVSDQ 59 Query: 190 QEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVA 247 EA +A +R E ++ +S+G +I +T+S GIA E I +I AD+ALY A Sbjct: 60 MEAEAIAEAIR--TEFCRLPVSTGEAIVPVTVSIGIALAASIEANIDKLISAADRALYAA 117 Query: 248 KKSGRNRVVCF 258 K +GRN V F Sbjct: 118 KAAGRNCTVTF 128 >gi|168261188|ref|ZP_02683161.1| AdrA protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|207855867|ref|YP_002242518.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238911482|ref|ZP_04655319.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|205350031|gb|EDZ36662.1| AdrA protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707670|emb|CAR31954.1| adrA protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 370 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|91793938|ref|YP_563589.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91715940|gb|ABE55866.1| GGDEF domain [Shewanella denitrificans OS217] Length = 621 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 13/195 (6%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS-------AF 118 + LSL + + +++LLG++ L+ S S+ D L+G+ + S Sbjct: 428 ITRLSLWLFVLLVAILLGFLGF-----LYQSRRFFKHRSQTDFLTGIASRSFTMEEGAKA 482 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 + + + L++V DID FK IND++GH +GD I ++ + +GR+GGE Sbjct: 483 LETCHKLKQPLAVVMLDIDNFKHINDSYGHDIGDMAIRAVAQRAKHWLKRNDILGRIGGE 542 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EF +++QEA ++A LR I N ++ G + +IS G+A ++ + + Sbjct: 543 EFLLVLPNNNQQEALLIAERLRVSI-NEKLFKFKGVELKFSISLGVALSKPQQGFNEQVK 601 Query: 239 RADQALYVAKKSGRN 253 AD ALY AK +GRN Sbjct: 602 NADLALYQAKNAGRN 616 >gi|16119598|ref|NP_396304.1| hypothetical protein Atu5372 [Agrobacterium tumefaciens str. C58] gi|15162162|gb|AAK90745.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 411 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 82/179 (45%), Gaps = 10/179 (5%) Query: 96 SYNRISQLSR---IDCLSGLLNHSAFISSLGSYN-EKL-----SIVFFDIDYFKQINDNF 146 +Y I + R +D L+ LLN + L S E+L +I+ DID+FK IND F Sbjct: 206 TYEAIEKYRRYANLDPLTNLLNRRGLDAVLASAQGERLKKPATAIILADIDHFKAINDRF 265 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD VI + T V RLGGEEFA + +A A +R+ Sbjct: 266 GHSFGDLVIKRFGALVQSHTTTQGCVARLGGEEFAVLLPDTCLDDAIAAAEKMRRSFAAE 325 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + S T S G+A E +ST RADQ LY AK+ GRNRV + T Sbjct: 326 RWPCDRKES-EFTASFGVALVEDGEALSTAFERADQFLYAAKRMGRNRVAAAKHVWRET 383 >gi|299771420|ref|YP_003733446.1| response regulator [Acinetobacter sp. DR1] gi|298701508|gb|ADI92073.1| response regulator [Acinetobacter sp. DR1] Length = 472 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFF--DIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L F+ S+ EK+ + FF D+D+FKQ+NDN+GH +GD+ + Sbjct: 311 DELTSSLTRRQFLQSVRLLQEKVHKENKTSAFFMLDVDHFKQVNDNYGHQIGDRALQTCV 370 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + +GR GGEEFA ++++ A LA +R I I I I I Sbjct: 371 TTIQNILHPHDLLGRFGGEEFAIFIADTTKESAFDLAEQIRIKISQQPIYIYGKLPIFIQ 430 Query: 220 ISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S GI + H+ I + AD ALY AK+ GRNRV Sbjct: 431 VSIGISLYSPSSHRA-IENLFKEADDALYQAKRQGRNRV 468 >gi|299132243|ref|ZP_07025438.1| diguanylate cyclase [Afipia sp. 1NLS2] gi|298592380|gb|EFI52580.1| diguanylate cyclase [Afipia sp. 1NLS2] Length = 344 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 9/186 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-----ISSLGSYN--EKLSIVFFDIDYFKQI 142 L + S + ++ D L+ L N A ++ + + + LS++ DID+FK+ Sbjct: 157 LDTIRTSLRDAEERAKTDTLTALPNRRALEEFFRVAQMRAMEVEDPLSLLMLDIDHFKKF 216 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH VGD+VI ++ L R GGEE A G+ +A +R Sbjct: 217 NDTYGHSVGDQVIRLIASVLRERVRENDLPARYGGEELIAVLPGADLATCHEVAERIRTT 276 Query: 203 IENSQI-NISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + S+G S+ I++S G+A+ E ++T+I R D+ALY AK GRN VV D Sbjct: 277 VAGCHLTRRSTGESLPDISVSIGVAQFRPGESMATLIERCDRALYKAKAQGRNCVVSEDD 336 Query: 261 IENNTC 266 + + C Sbjct: 337 LTDADC 342 >gi|325982814|ref|YP_004295216.1| diguanylate cyclase [Nitrosomonas sp. AL212] gi|325532333|gb|ADZ27054.1| diguanylate cyclase [Nitrosomonas sp. AL212] Length = 558 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 15/170 (8%) Query: 103 LSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GL N + L Y +++ D+D+FK NDN GH GD+VI Sbjct: 385 LSVTDSLTGLYNRNKLNVIISDQLARYERNKRPFAVLMIDVDHFKTFNDNLGHVAGDEVI 444 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 A ++ ++ F R GG+EF ++ EA A +R + N + S + Sbjct: 445 AAVAKKISQSIRNVDFAARYGGDEFIIILTETAVNEAMKTAERIRAQVANVHCS-SLNKT 503 Query: 216 IHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + +T+S GI EP ++T++ R D ALY AK+SGRN+V C + I Sbjct: 504 LRVTLSIGI---IQSEPEDISLTTLLARVDSALYQAKRSGRNQVHCVAPI 550 >gi|256828284|ref|YP_003157012.1| PAS/PAC sensor-containing diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gi|256577460|gb|ACU88596.1| diguanylate cyclase with PAS/PAC sensor [Desulfomicrobium baculatum DSM 4028] Length = 572 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 24/172 (13%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+ D L+GL N F+ + + + + L + DID FK++ND GH VG Sbjct: 400 RLERLANTDELTGLPNRRHFLECVRAEMTRSRRFGKSLCVAMVDIDDFKKVNDTHGHGVG 459 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--------AAALGSSEQEAAILANDLRKII 203 D + ++ + + VGRLGGEEF AA + ++E+ LA ++ Sbjct: 460 DLALRHVAQTINGLRRAVDVVGRLGGEEFCVLFPEAGLAAGITAAERVRKALAE---AVL 516 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E+ + + +T+S G+AE E + ++ R+D+ALY AK++G+NRV Sbjct: 517 EHGDLRL------RLTVSIGLAEYSGDESLDGLLRRSDEALYEAKRTGKNRV 562 >gi|153010998|ref|YP_001372212.1| response regulator PleD [Ochrobactrum anthropi ATCC 49188] gi|151562886|gb|ABS16383.1| response regulator receiver modulated diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] Length = 461 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 9/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S NR ++ D L+GL N ++ LS++ D D+FK+IND +GH Sbjct: 288 SLNRTITMAVTDSLTGLHNRRYLDTHMPVLLTRAMGRERPLSVIMLDFDHFKRINDQYGH 347 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ + +L + R GGEEF S + A +A +R + ++ Sbjct: 348 DAGDDVLREFATRLRKNIRGMDLMCRYGGEEFVVVLPDSDVEAAKAVAERIRIAVSDTPF 407 Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +++G +++TIS G+A R + + R D ALY AKK GRNR+V Sbjct: 408 AVANGKHKVNLTISMGVAGLRLMGDSADALFSRTDAALYQAKKGGRNRIV 457 >gi|13474502|ref|NP_106071.1| hypothetical protein mlr5400 [Mesorhizobium loti MAFF303099] gi|14025256|dbj|BAB51857.1| mlr5400 [Mesorhizobium loti MAFF303099] Length = 416 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 10/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQINDNFGHPVGD 152 + Q + D ++G+L+ AFI G + ++ S + FD+D+FK +NDNFGH GD Sbjct: 169 LRQHASSDAVTGVLSRRAFIDQGGKAFALARRQRFDFSCIVFDVDHFKSVNDNFGHAAGD 228 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV++ + Q GR+GGEEF A L + A A LR IE +I Sbjct: 229 KVLSGVGRQCGAALRDVDIFGRVGGEEF-AVLLYTGRNGALESAERLRGTIETMRIT-HG 286 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +T S G+A + +I RAD A+Y +K +GRNR+ ++ Sbjct: 287 AQEMQVTASFGVASFDPATSGLPELIERADAAMYRSKHAGRNRITAWN 334 >gi|330874570|gb|EGH08719.1| GGDEF domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 677 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 81/157 (51%), Gaps = 8/157 (5%) Query: 106 IDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+GL N +A+ L EK S++ D+D+FK+IND +GH GDKV+ + Sbjct: 519 IDPLTGLPNRAAWGERLEQEMADWQREKNSLLVCILDLDHFKRINDGYGHLAGDKVLKIV 578 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ F+ R GGEEF + L ++LR +E + G + I Sbjct: 579 ANVFKKRLRPADFLARFGGEEFVMLLPATPPGTGLTLLDELRTAVELCPFHFK-GERVTI 637 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+ E T I RADQALY AK++GRNRV Sbjct: 638 TVSIGVTALRTGERSDTAIKRADQALYKAKENGRNRV 674 >gi|298505517|gb|ADI84240.1| sensor diguanylate cyclase, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 300 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 10/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 + + QL +D L+G+ N L S Y ++ D+D+FK+IND+FGH + Sbjct: 134 DELQQLVFLDPLTGVANRRYIQMYLQSKFDEMFRYGWPFGVMLLDLDHFKEINDSFGHQM 193 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ + L + +GR GGEEF A E+ +A R+++E S + + Sbjct: 194 GDDLLKMAARTLRNAVRSYDLIGRWGGEEFIAIITNVREKRLCEMAERFRRLVEESSMTV 253 Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G +I +T+S G + + +++ R D+ LY +K +GRN V C Sbjct: 254 --GDNIARVTVSIGATLATSDDTVGSLLKRTDELLYRSKGAGRNCVTC 299 >gi|296137587|ref|YP_003644829.1| diguanylate cyclase [Thiomonas intermedia K12] gi|295797709|gb|ADG32499.1| diguanylate cyclase [Thiomonas intermedia K12] Length = 523 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 11/172 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ L+ D L+GL N F + + + I+ D+D+FKQIND +GHPV Sbjct: 354 QQLRALAHTDPLTGLQNRRGFFAMVEHALRTRPAGQPGPCIMLIDLDHFKQINDRYGHPV 413 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ + ++ + R+GGEEF +A +A +R+ + Sbjct: 414 GDEILVEFAQVVLSLLREGDVFARMGGEEFCILLAHMRASQALEVAERVREFVAAHPFQT 473 Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S+G + +++S GIA C + I ++ ADQA+Y AK+ GRNR + D Sbjct: 474 SAG-VVRLSLSLGIAG-CDAPVQSIDRVLSMADQAMYRAKQGGRNRTELYCD 523 >gi|194292813|ref|YP_002008720.1| diguanylate cyclase (ggdef domain) [Cupriavidus taiwanensis LMG 19424] gi|193226717|emb|CAQ72668.1| putative diguanylate cyclase (GGDEF domain) [Cupriavidus taiwanensis LMG 19424] Length = 528 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 9/164 (5%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+G+ N F ++ + L ++ D+D FKQ ND GH GD + + Sbjct: 364 IDALTGIRNRRYFQRESIAAVTRACERGQPLGLLILDVDQFKQYNDLHGHMAGDDCLRQI 423 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIH 217 + + V F RLGGEEFAA G+S E LA + + I P Sbjct: 424 AGAISGVLHGEQFCARLGGEEFAAVLPGASRDETRELARRMVAAVRELGIAHQGTPVQPV 483 Query: 218 ITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 +TIS G + P + +++RAD A+Y AK++GRNR + D Sbjct: 484 VTISVGAVWAVPEAPRLEPLLHRADSAMYRAKRAGRNRFMLDGD 527 >gi|124266212|ref|YP_001020216.1| diguanylate cyclase [Methylibium petroleiphilum PM1] gi|124258987|gb|ABM93981.1| diguanylate cyclase [Methylibium petroleiphilum PM1] Length = 351 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 6/162 (3%) Query: 104 SRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 ++ D L+GL N +F L +S+V DID+FK +ND GH GD+V+ ++ Sbjct: 176 AQTDSLTGLHNRRSFEQHIAKFLADREAAMSLVLVDIDHFKLVNDTHGHLFGDQVLMAVA 235 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217 L R+GGEEFA + + A LA +R I NS+I + Sbjct: 236 RVLKESVRNDDLAARIGGEEFALLLPSTPLKGAVELAERIRTSIANSRIRRRNSEQQVGQ 295 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 IT+S G+A+ + + RAD+ALY +K+ GRNRV S Sbjct: 296 ITVSLGVADLWPSDNGESWFSRADEALYASKREGRNRVTAPS 337 >gi|72162617|ref|YP_290274.1| hypothetical protein Tfu_2218 [Thermobifida fusca YX] gi|71916349|gb|AAZ56251.1| GGDEF [Thermobifida fusca YX] Length = 448 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 27/176 (15%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + ++ +R D +GLLN A+ ++ L+++ DID+FK++ND GH Sbjct: 258 FQQLQTAARTDPKTGLLNAVAWERVAKTELTRALRTGCPLAVLIIDIDHFKKVNDTHGHL 317 Query: 150 VGDKVI----AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 VGD+V+ LS QL P +GR GGEEF G+ EA A LR Sbjct: 318 VGDQVLLNVATMLSQQL-----RPYDVIGRFGGEEFVVLLPGADMAEACRTAERLR---- 368 Query: 205 NSQINISSGP----SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +Q+ + P +I +T+S G+A R H + ++ AD ALY AK SGR+RV Sbjct: 369 -TQVGRMAQPINDITITVTVSIGVALLRVHGRDLLELMAAADLALYRAKDSGRDRV 423 >gi|167036757|ref|YP_001664335.1| GAF sensor-containing diguanylate cyclase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115180|ref|YP_004185339.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855591|gb|ABY93999.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928271|gb|ADV78956.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 554 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 10/172 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +++ S D L+ N F +L +E +S++ FD+D FK IND +GH Sbjct: 383 YYEVTKKSITDPLTKTYNRRYFNDALMENIMRADETSEPVSLIMFDLDNFKLINDTYGHL 442 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ ++ ++ + V R GGEEFA + ++A ++A +R + + I Sbjct: 443 VGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRNEVSSRPIR 502 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259 G I++TI+ G+A+ K + +I AD+ALY KS GRN++ + Sbjct: 503 TDKG-DIYVTITGGVADYPEKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553 >gi|226198081|ref|ZP_03793653.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9] gi|225929957|gb|EEH25972.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9] Length = 499 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 326 LARLAGTDSLTGLYNRRALDETLEREWRRAVGGDRPLAILFVDIDHFKRYNDTYGHQVGD 385 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 386 EVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRLGVRMLGIE 443 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + I I+ ADQALY AK GRNRVV Sbjct: 444 HEGSEVGFVTVSVGVAVWHPDGASAPHIDAIVEAADQALYQAKADGRNRVV 494 >gi|254457121|ref|ZP_05070549.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Campylobacterales bacterium GD 1] gi|207085913|gb|EDZ63197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Campylobacterales bacterium GD 1] Length = 648 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 95/171 (55%), Gaps = 15/171 (8%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ ++ D L+ L N F I+ +K+++ + D+D FK++ND +GH VG Sbjct: 472 RLEHMAHYDMLTNLPNRVLFSDRMHQAIAQTARREQKIAVAYIDLDGFKEVNDRYGHDVG 531 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINI 210 DK++ L++++ + + R+GG+EF A + S++E+ I L++++E SQ Sbjct: 532 DKLLILLAERMSNLLREGDSISRVGGDEFVALLIDISDKESVISF--LKRLLEVTSQAVE 589 Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259 S++++ S G+ KE + II +ADQA+Y AK SG+N C++ Sbjct: 590 IDDLSLNVSASIGVTFYPQKELLDVDQIIRQADQAMYRAKLSGKN---CYN 637 >gi|206558832|ref|YP_002229592.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] gi|198034869|emb|CAR50741.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] Length = 452 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 14/178 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 ++LF ++ + + S D L+G N H+ F+ + E LS++ D+D FK Sbjct: 275 QQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDRFKAY 333 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD + +++ L P V R GGEEFA + + A ++A+++R+ Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVADEVRE 393 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 + + + P+ +++S G A + +ST +I AD ALY AK +GRNRVV Sbjct: 394 AVLRLDLAMPDSPAGRVSVSVGCAT-VSADDLSTPDALIEAADAALYRAKDAGRNRVV 450 >gi|156933994|ref|YP_001437910.1| hypothetical protein ESA_01820 [Cronobacter sakazakii ATCC BAA-894] gi|156532248|gb|ABU77074.1| hypothetical protein ESA_01820 [Cronobacter sakazakii ATCC BAA-894] Length = 480 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 13/168 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVG 151 +IS+ + D L+G+ + S +L + L ++ D+D+FK INDN+GH G Sbjct: 296 QISRRANYDHLTGVYSRSGLFEALARDDANPALAGRPLCVMLMDLDHFKSINDNYGHECG 355 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+A +L + G V R+GGEEF + A LA +R+ + + + Sbjct: 356 DAVLAVFGQKLREITGEAGRVARMGGEEFVVVCPNITLDRACHLAETIRQQVAGQPV-VC 414 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYR----ADQALYVAKKSGRNR 254 G S+ +IS G+ + +E +S R AD LY +K+ GRNR Sbjct: 415 EGKSVSFSISIGLGYDAAPRERVSDAFTRLMREADTLLYQSKRQGRNR 462 >gi|150377268|ref|YP_001313863.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae WSM419] gi|150031815|gb|ABR63930.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae WSM419] Length = 729 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 10/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHP 149 S ++ L+R D L+GL N ++F SL + ++ ++++ D+D FKQ+ND GHP Sbjct: 296 SQAELNHLARHDPLTGLANRASFNQSLAQAVASSAADQANALLYLDLDRFKQVNDTLGHP 355 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+++ ++ +L+ + + R+GG+EF + ++E L + L I Sbjct: 356 VGDRLMVAVAKRLMET-ASAGVISRIGGDEFTIVVERTRQEEVEKLCDSLIAAIRQP-FE 413 Query: 210 ISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I P I ++I +A +P+ I +AD ALY AK +GRNR F Sbjct: 414 IDGQPILIGLSIGVAVATGNDADPVE-ITRKADIALYHAKSAGRNRYAVF 462 >gi|330972351|gb|EGH72417.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 308 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + + LS++ DID+FK++ND +GH GD V+ ++ L V R GGEEF Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + A ++ L + + N + S P++ +T+S G + E +++ RAD AL Sbjct: 235 SNTGADSAELIGQRLCQAVRNLEFRELS-PALTMTVSLGCSTLLPTETADSLLRRADNAL 293 Query: 245 YVAKKSGRNRVVCFS 259 YVAK+ GRNR+ S Sbjct: 294 YVAKREGRNRIAMAS 308 >gi|302187659|ref|ZP_07264332.1| GGDEF [Pseudomonas syringae pv. syringae 642] Length = 308 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + + LS++ DID+FK++ND +GH GD V+ ++ L V R GGEEF Sbjct: 175 HKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVIL 234 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + A ++ L + + N + S P++ +T+S G + E +++ RAD AL Sbjct: 235 SNTGADSAELIGQRLCQAVRNLEFRELS-PALTMTVSLGCSTLLPTETADSLLRRADNAL 293 Query: 245 YVAKKSGRNRVVCFS 259 YVAK+ GRNR+ S Sbjct: 294 YVAKREGRNRIAMAS 308 >gi|149377541|ref|ZP_01895281.1| diguanylate cyclase [Marinobacter algicola DG893] gi|149358154|gb|EDM46636.1| diguanylate cyclase [Marinobacter algicola DG893] Length = 365 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 112/216 (51%), Gaps = 22/216 (10%) Query: 55 LTPFYGLEYI-----LVENLSLVIISITISLLLGYIS--GSILKELFISYNRISQLSRID 107 +T ++ LE++ +++ L++V+ +I L+LG+I + +E + ++ L++ D Sbjct: 140 ITFYFHLEFVADAGGVIDLLNMVLCAI---LMLGFIHLYETRREE---AEQKLFTLAQTD 193 Query: 108 CLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+GL N + F S+L ++V DID+FK +ND GH GD V+ + Sbjct: 194 ALTGLANRANFQSTLDRTLAECARSGSGFALVIMDIDHFKVVNDTMGHDAGDHVLQNIGK 253 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 QL VGRLGGEEF +++ L ++LR+ I +S++ I +T Sbjct: 254 QLTERLRITDAVGRLGGEEFGLILRDVKLEDSFQLMDELRQRIADSELPYGDA-LIRVTA 312 Query: 221 SAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255 S GIA H T+ AD+ L+ +K++GRNRV Sbjct: 313 SFGIAHYPDHAIEAETLFRIADRCLFSSKRAGRNRV 348 >gi|91791817|ref|YP_561468.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91713819|gb|ABE53745.1| diguanylate cyclase [Shewanella denitrificans OS217] Length = 641 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 13/177 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL---GSYNEK----LSIVFFDIDYFKQI 142 L+EL ++ + + +D L+G+ N +AF L G + + ++I+ DID FK I Sbjct: 459 LRELNDVNQKLLEQTTLDSLTGVKNRNAFDKRLVAEGRISRRQQTPMAILMLDIDKFKSI 518 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD I ++ L P V R GGEEFA + A I+A +R Sbjct: 519 NDEFGHLGGDHCIQSIAKVLTEQLKRPTDLVSRFGGEEFAIILPNTDLDGAMIVAETVRA 578 Query: 202 IIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ Q+ P S + +SA + E + PI ++ AD+ALY AK++GRNR+ Sbjct: 579 SIDELQLVWDEKPMKISASLGVSAAVIE-SDEHPIE-LLELADKALYQAKRNGRNRI 633 >gi|24375348|ref|NP_719391.1| cyclic nucleotide phosphodiesterase, putative [Shewanella oneidensis MR-1] gi|24350166|gb|AAN56835.1|AE015818_11 cyclic nucleotide phosphodiesterase, putative [Shewanella oneidensis MR-1] Length = 631 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 21/206 (10%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAFIS 120 +L +N SL +I I LL G I ++ + +R QL I D L+ L N + Sbjct: 422 LLEKNKSLQLI---ILLLTGCILATVSLFAYKQVHRNRQLQTIALTDYLTQLPNRRHIYA 478 Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 Y + SI+ FD D+FK+INDNFGH +GD+ + +++ + VG Sbjct: 479 QAEQYFQLALKQQIPFSIIIFDADHFKKINDNFGHEIGDQALLTIAEASKTLTTDRNLVG 538 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIA-----ER 227 R+GGEEF + A LA++L+ +I IN+ + +T+SAG+A Sbjct: 539 RIGGEEFLILLPNTDADRAWKLAHELQTLITRFGAINLPV--ELKLTVSAGVATLPIQSE 596 Query: 228 CHKEPISTIIYRADQALYVAKKSGRN 253 + + ++ RAD ALY AK +GRN Sbjct: 597 LQDQNFARLLKRADNALYEAKNAGRN 622 >gi|325917835|ref|ZP_08180014.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325535946|gb|EGD07763.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 988 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN + +++L + L++V D+D+FK +ND GH GD V+A + Sbjct: 818 DELTGLLNRAGILAALRDMLRNADATARPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 877 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L + +GR GGEE A G + + L R I + I+ G +H+T Sbjct: 878 RRLDTLVRGDDRIGRYGGEELLALLPGLTHEATHRLDALHRGICGDYPID---GGWLHVT 934 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E + ++ RAD ALY AK+SGRNR+ Sbjct: 935 CSIGVAWFAPGETLEQLLARADTALYSAKRSGRNRI 970 >gi|313673627|ref|YP_004051738.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672] gi|312940383|gb|ADR19575.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672] Length = 403 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N I L Y K S++F DID FK+IND +GH VGD V+ +L+ Sbjct: 246 DPLTGLFNRKFMMKKIEEEIERLKRYGSKFSVIFLDIDNFKRINDVYGHIVGDFVLKYLA 305 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + + R GGEE ++ + A + L +I+ N+ + + IT Sbjct: 306 NIIKSELRKVDYAFRYGGEEMVILLSETNLENALKFSERLLEIVRNTIFKYKT-EDLKIT 364 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+AE E I +I RAD A+ AK++G++RVV Sbjct: 365 VSIGVAEFKPGETIEQLIERADMAMLKAKQAGKDRVVS 402 >gi|300924100|ref|ZP_07140094.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] gi|300419696|gb|EFK03007.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] Length = 362 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 25/197 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II + LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPII-VVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVREGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKS 250 R AD ALY AKK+ Sbjct: 346 REWLKSADLALYKAKKA 362 >gi|326319540|ref|YP_004237212.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376376|gb|ADX48645.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 402 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 16/177 (9%) Query: 93 LFISYNRIS----QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 +F++ +R +++ D L+ + N A I++L E LS++ DID+FK+ Sbjct: 205 IFMARDRADAANERMAARDPLTDVPNRRATIAALDRCVAQAVRSGEPLSVMMLDIDHFKR 264 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND GH GD+V+ + D L + +GR GGEEF + A +LA +LR Sbjct: 265 INDGLGHLAGDQVLCGVVDVLGERLRSQDLIGRYGGEEFLVLLPRTPLAGALVLAGELRA 324 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255 +E + G ++ +T+S G+A EP ++ AD+A+Y AK++GRN+V Sbjct: 325 AVEQAHFEF-VGRTVPVTLSIGVAGGV-LEPGDRWDGLVAAADEAMYRAKRAGRNQV 379 >gi|200390604|ref|ZP_03217215.1| AdrA protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603049|gb|EDZ01595.1| AdrA protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 365 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 169 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 227 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 228 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 287 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 288 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 338 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 339 YREWLKSADMALYKAKNAGRNRT 361 >gi|161615434|ref|YP_001589399.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364798|gb|ABX68566.1| hypothetical protein SPAB_03205 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 370 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|194436522|ref|ZP_03068623.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1] gi|253773497|ref|YP_003036328.1| hypothetical protein ECBD_2104 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161589|ref|YP_003044697.1| hypothetical protein ECB_01494 [Escherichia coli B str. REL606] gi|300929009|ref|ZP_07144507.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] gi|194424554|gb|EDX40540.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1] gi|242377281|emb|CAQ32022.1| diguanylate cyclase [Escherichia coli BL21(DE3)] gi|253324541|gb|ACT29143.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973490|gb|ACT39161.1| hypothetical protein ECB_01494 [Escherichia coli B str. REL606] gi|253977701|gb|ACT43371.1| hypothetical protein ECD_01494 [Escherichia coli BL21(DE3)] gi|300463022|gb|EFK26515.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] Length = 296 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLTGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF +++++A + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEDACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|332308909|ref|YP_004436759.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176238|gb|AEE25491.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 386 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 19/182 (10%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 LFI ++ D L+G+ + A ++ ++ D+D+FK+ ND +GH GD Sbjct: 203 LFIVLKESHNMAYRDQLTGISSRRAMEVQASGLGKRFAVAMCDVDHFKKFNDTYGHDTGD 262 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---- 208 V+ ++ +L V G + R GGEEF S QEA LR I N + Sbjct: 263 DVLRLVAKKLACVGGGGL-TYRYGGEEFCIIFKNKSGQEAFPYIEPLRLTIANYTLILRD 321 Query: 209 --------------NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 ++ S+ +T+S GIAE E ++ RADQ LY AK++GRN Sbjct: 322 KDRKQHTKEMRGISDVQGQQSVCVTMSFGIAETLSGEKFEDVLKRADQRLYNAKEAGRNC 381 Query: 255 VV 256 V+ Sbjct: 382 VM 383 >gi|330952070|gb|EGH52330.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7] Length = 690 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +A+ + + E+ L + D+D+FK+IND +GH GDKV Sbjct: 528 QKALIDPLTGLPNRAAWGERLEQEMARWQEEKNSLLVCILDLDHFKRINDGYGHLAGDKV 587 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ F+ R GGEEF + L ++LR +E+ + G Sbjct: 588 LKIVANVFSKRLRANDFLARFGGEEFVMLLPATPPATGLTLLDELRAAVESCPFHFK-GE 646 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNR+ Sbjct: 647 RVTITVSIGLTAFRPGERSDTAIKRADQALYKAKENGRNRI 687 >gi|258405563|ref|YP_003198305.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense DSM 5692] gi|257797790|gb|ACV68727.1| diguanylate cyclase with PAS/PAC sensor [Desulfohalobium retbaense DSM 5692] Length = 315 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 10/168 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +++R+D L+GL N + SL G ++++ D+D+FK +ND +GH G Sbjct: 146 QLEEMTRLDPLTGLANRRHLMESLSRELSRCGRSGSQVTVAILDLDHFKVVNDTYGHLCG 205 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ + +L + VGR GGEEF +S + + LRK + + + Sbjct: 206 DQVLIHTAKRLESMLRQYDLVGRYGGEEFCVILPETSLKSGFEIVERLRKAVAATPVPYE 265 Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 I +T+SAG A E +ST ++ ADQ LY AK +GR+ V C Sbjct: 266 D-LEIPLTVSAGCACTEDMECLSTDALLLSADQYLYKAKDAGRDCVQC 312 >gi|218549243|ref|YP_002383034.1| diguanylate cyclase, GGDEF protein [Escherichia fergusonii ATCC 35469] gi|218356784|emb|CAQ89412.1| putative diguanylate cyclase, GGDEF protein [Escherichia fergusonii ATCC 35469] Length = 463 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 15/161 (9%) Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N S F + L N+ ++ DID+FK +ND +GHP GDKVI + D Sbjct: 296 DPLTNIFNRSHFFNELKGQVNSGDNKPFCVMIMDIDHFKSVNDTWGHPEGDKVIKAVVDI 355 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF +E LA +RK +E N Q I+ +I Sbjct: 356 IGKSIRPDDVLARVGGEEFGVMLTHLERKEGEELAERIRKNVEQLTDNNPQYAIAQKVTI 415 Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 I + + H IYR AD ALY AK +GRN+V+ Sbjct: 416 SIGVVVTQGDVLHPND----IYRLADNALYNAKATGRNKVI 452 >gi|91226388|ref|ZP_01261187.1| hypothetical protein V12G01_06266 [Vibrio alginolyticus 12G01] gi|91189202|gb|EAS75482.1| hypothetical protein V12G01_06266 [Vibrio alginolyticus 12G01] Length = 349 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 9/171 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDN 145 L I ++ L+ D L+G+ N F+ S L Y + + D+D FK +ND Sbjct: 172 LHIQIMKMEHLATTDDLTGIPNRREFMRQIESRLNEYRTQGIDFHVAILDLDNFKSLNDR 231 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH GDK + + + + R+GGEEFA S Q+A +R +E Sbjct: 232 FGHDAGDKSLIHAVNTIKSHLLDCDLLARVGGEEFAIVLRSRSSQQALDTLETIRNALET 291 Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 + + SG + T S G+ + C + ++ RAD ALY AK++GRNRV Sbjct: 292 TTVQ-HSGCDMSFTASIGVTQVCRLDDSFEPLVKRADLALYKAKETGRNRV 341 >gi|62178996|ref|YP_215413.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167551810|ref|ZP_02345563.1| AdrA protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|224582221|ref|YP_002636019.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62126629|gb|AAX64332.1| putative diguanylate cyclase/phosphodiesterase domain 1 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205323419|gb|EDZ11258.1| AdrA protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|224466748|gb|ACN44578.1| adrA protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713453|gb|EFZ05024.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 370 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|330447646|ref|ZP_08311294.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491837|dbj|GAA05791.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 429 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/125 (40%), Positives = 67/125 (53%), Gaps = 5/125 (4%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ DID+FK+IND +GH GDKVI +L+ L + V R GGEEF S+ Sbjct: 306 SLILLDIDHFKRINDQYGHDEGDKVIKYLAKNLNQLNSNSTRVFRWGGEEFLIVLPKLSK 365 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 + L N I N + G +TIS G+ E+ +E I IYRAD ALY +K Sbjct: 366 KA---LLNKAESIRTNLDYTLQDGS--RVTISLGVTEQKREESIFQAIYRADIALYQSKF 420 Query: 250 SGRNR 254 GRN+ Sbjct: 421 QGRNK 425 >gi|325003401|ref|ZP_08124513.1| GGDEF domain-containing diguanylate cyclase [Pseudonocardia sp. P1] Length = 419 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 97/185 (52%), Gaps = 21/185 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLS--IVFFDIDYFKQINDNFGHPV 150 ++ + D +GLLN ++ S G+ + + ++ D+DYFK++ND +GH V Sbjct: 226 RQLETRAETDEKTGLLNPDSWRSRAQRGLAGAERDGAAAGVLILDLDYFKEVNDRYGHLV 285 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA----ALGSSEQEAAI--LANDLRKIIE 204 GD V+ +++ + GR GGEEF A G+ EAA+ + +R+ +E Sbjct: 286 GDAVLQAVAEVISREVRDGDVAGRFGGEEFVIALGPVRPGNDGGEAAVREVGERIRRRVE 345 Query: 205 NSQINISSGPSI---HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 Q+ +S+ P++ +T+S G A + + T++ AD+ALY AK++GRNRV Sbjct: 346 TLQVQVSAAPTLVIEELTVSIGAALYPSTADELDTLLAIADEALYAAKRAGRNRV----Q 401 Query: 261 IENNT 265 + N T Sbjct: 402 VRNGT 406 >gi|307300872|ref|ZP_07580647.1| diguanylate cyclase [Sinorhizobium meliloti BL225C] gi|306904406|gb|EFN34991.1| diguanylate cyclase [Sinorhizobium meliloti BL225C] Length = 414 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 12/180 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL + R+ +L++ D L+G+ N + +L +++ DID FK +ND Sbjct: 229 ELADANARLERLAKTDPLTGIANRRWMMETLNRLWSSGAERRPGTAMLMCDIDDFKSLND 288 Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH GD+ + ++ + V V R GGEEF G++E+ A A +R + Sbjct: 289 RLGHAEGDRCLVKVAGIIQSSVRRNRDHVARYGGEEFLVVLPGANEEAAVATAERIRASV 348 Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVVCFS 259 E + + N +S + ++T+S G+A + E I + +AD ALY+AK++GRNRVV + Sbjct: 349 EAASLPNPASRVAPYVTLSIGVAAQAPGEEIVAPEKLQNQADAALYLAKQAGRNRVVLYQ 408 >gi|299534010|ref|ZP_07047362.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298717919|gb|EFI58924.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 501 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 10/177 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 LK + + ++ L+R D L+GL N L + S++F DID FK Sbjct: 300 LKRRIHAESELALLARTDGLTGLNNRRRLDEMLDQEWHRARRNHSIFSLLFVDIDRFKAY 359 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD VIA ++ + P R GGEEF +S + A+ LA +R Sbjct: 360 NDTYGHQAGDDVIATIAKCIGDNIRRPGDIAARYGGEEFIVVLPDTSLEGASCLAESIRA 419 Query: 202 IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + S +IT+S G A E H ++++I AD+ALY AK +GRN+VV Sbjct: 420 AVSQLSVEHSGSEFGYITVSIGCAAWEPEHDADVASVIRSADEALYKAKTTGRNKVV 476 >gi|258622470|ref|ZP_05717492.1| GGDEF family protein [Vibrio mimicus VM573] gi|258585170|gb|EEW09897.1| GGDEF family protein [Vibrio mimicus VM573] Length = 338 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGL N AF +L + + ++ DID+FK +ND +GH GD++I ++ +L Sbjct: 182 DSLSGLYNRRAFDGDMFTLIHADHPVCLIMLDIDHFKALNDTYGHLFGDQIIRAIAKRLQ 241 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA S + A A +R+ IE + + SG S+ +IT S Sbjct: 242 SLCRDGVTAYRYGGEEFALITPNKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGNITAS 301 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E+ + + +++ RAD LY AK GRNRV+ Sbjct: 302 FGVVEKIDGDSLESLVGRADGLLYEAKNLGRNRVM 336 >gi|258514041|ref|YP_003190263.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771] gi|257777746|gb|ACV61640.1| diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771] Length = 236 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 20/193 (10%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 LV + I + G + G I+ L+ + + +D L+GL N + F L + Sbjct: 39 LVFLFIFFQTIAGLVLGRIINNLY-------KQAYVDFLTGLYNKNYFNKKLTNELKKTQ 91 Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 N LS++ DID FK INDN+GH +GDKVI+ L++ L + R GGEEF Sbjct: 92 NSNSVLSLLIIDIDNFKGINDNYGHVMGDKVISALTNVLRQNLRGVDILSRWGGEEFTVI 151 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 ++ + AA A LR IIE++ N+ G +T+S G+A ++ +AD+A Sbjct: 152 LPETNTEGAAASAERLRNIIEDT--NLFCGK---VTVSIGVASTNGHIDKDILVAQADKA 206 Query: 244 LYVAKKSGRNRVV 256 LY AK+ RN VV Sbjct: 207 LYKAKEK-RNTVV 218 >gi|297519532|ref|ZP_06937918.1| hypothetical protein EcolOP_17952 [Escherichia coli OP50] Length = 296 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLTGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF +++++A + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEDACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|262279764|ref|ZP_06057549.1| WspR [Acinetobacter calcoaceticus RUH2202] gi|262260115|gb|EEY78848.1| WspR [Acinetobacter calcoaceticus RUH2202] Length = 420 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 10/173 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145 L I + + LS+ D L+ + N F + L+++F DID+FK ND Sbjct: 237 LRIEASELLHLSQQDALTKISNRRTFDEMFDFFYYRAKQEQRPLAVLFIDIDFFKNYNDC 296 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH +GDKVI+ ++ + FV R GGEEF + Q A +A ++ K IE Sbjct: 297 YGHQMGDKVISSIASAIKNSIRHVDFVARYGGEEFVVLLPKTPAQGAYAVAANIYKAIER 356 Query: 206 SQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 I + +S S H+TIS G ++ +I+ ADQALY AK+ GRN++ Sbjct: 357 QAIPHAASLVSQHVTISLGFTVYTEGLRVTQENLIHAADQALYRAKQLGRNQI 409 >gi|261227550|ref|ZP_05941831.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str. FRIK2000] Length = 600 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 407 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 466 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 467 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 526 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 527 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 586 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 587 KQAGRNRV 594 >gi|197335681|ref|YP_002156460.1| ggdef domain protein [Vibrio fischeri MJ11] gi|197317171|gb|ACH66618.1| ggdef domain protein [Vibrio fischeri MJ11] Length = 490 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 93 LFISYNRISQ-----LSRIDCLSGLLNHSAFISSLGSYNEKLSIVF--FDIDYFKQINDN 145 +F +R+SQ L++ D ++GL N F SL K + F +DID FKQIND Sbjct: 319 MFYYQSRVSQKYYRDLAKQDPMTGLYNRRGFEMSLQDRVVKKYVGFAIYDIDDFKQINDV 378 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH VGD+ I +++ L V R GGEEF S + +RK I++ Sbjct: 379 FGHDVGDEAIKYVARMLNKSVRDSDIVSRFGGEEFVICINAESRNSLESVCERVRKSIQD 438 Query: 206 SQINISSGPSIHITISAGIAE-RCHKE-PISTIIYRADQALYVAKKSGRNRV 255 S + G T+S G+ H+E +I +AD LY AK+ G+NRV Sbjct: 439 SSGKVVKGG---FTVSGGVTVIDSHQEFSFEHVIKKADALLYKAKQDGKNRV 487 >gi|330830637|ref|YP_004393589.1| response regulator PleD [Aeromonas veronii B565] gi|328805773|gb|AEB50972.1| Response regulator PleD [Aeromonas veronii B565] Length = 373 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 9/167 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151 R+ + S D L+G++N + L +L +++ D+D FK+IND +GH G Sbjct: 195 RLYRESTTDELTGMMNRRLLMKQLEQARIRLQLKKKPFAVMLLDLDRFKRINDIYGHLAG 254 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQI-N 209 D V+ ++ L M +GR GGEEFA ++ A+ +A LR +E + + Sbjct: 255 DAVLKEVATTLGEQLEPDMVLGRYGGEEFAILMHNCADPALASKMAERLRIAVEARLVKS 314 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S + +T+S GIA + I +I RAD+ LY AK +GRN VV Sbjct: 315 PTSDELLEVTVSIGIAMARSDDTIDILINRADECLYQAKMAGRNCVV 361 >gi|260220639|emb|CBA28380.1| hypothetical protein Csp_A06980 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 774 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 13/180 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 S + E S N + QL+ D L+GL N F++ + L+++ D+D FK IND Sbjct: 332 SDVTEKVQSTNLLRQLAHTDSLTGLTNRFKLREFLTEKVAGKHPLALLSIDLDRFKAIND 391 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND----L 199 GH VGD V+ ++ +L G + RLGG+EFA + + Q+A L L Sbjct: 392 RHGHSVGDDVLRLIAQRLRQQLGPQTMIARLGGDEFAVVLVEPGDIQQAPTLGRRVVHLL 451 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ ++ S ++ G S+ +TIS R + ++ +AD ALY AK +GR + V ++ Sbjct: 452 QEPLDISVRRLTVGGSVGLTIS-----RGDVVTLDELMVQADIALYAAKDAGRGQCVAYT 506 >gi|302878209|ref|YP_003846773.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302580998|gb|ADL55009.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 635 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 8/169 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL +S R+ L+ D L+GL N + L + + DID+FK IND Sbjct: 463 ELALSNKRLQALAVTDALTGLPNRRYMMERLEQEWALATRAGRPVCCMMVDIDHFKMIND 522 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH +GD+ + ++ L + R+GGEEF S + I A LR+ + Sbjct: 523 TYGHQLGDEALKLVASSLQQAMRKQDVLCRVGGEEFMVICPDSDNKAGFIYAERLRQHVA 582 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + ++SG S+ +T+S G+A+ ++++AD LY AK +GRN Sbjct: 583 FQPV-LASGKSLRLTVSIGLADNAGLASPEAMMHQADLRLYAAKAAGRN 630 >gi|289207324|ref|YP_003459390.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] gi|288942955|gb|ADC70654.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] Length = 355 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 15/184 (8%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIV 132 L ++ LK F+ ++ +++D L+ L N A I L Y + S++ Sbjct: 175 LSAFVLERALKLTFLQQRELAHSAQVDELTSLSNR-AHIEQLFEEECARTERYGQPFSVI 233 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DIDYFK +ND +GH GD V+ ++ L +GR+GGEEF + ++A Sbjct: 234 LIDIDYFKAVNDTWGHRTGDTVLKQFAELLRQNLRKVDAIGRIGGEEFFVLLPQTDAEQA 293 Query: 193 AILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A DL ++IN ++ T S G+ E E RADQALY AKK+G Sbjct: 294 QAAARDL-----QARINAFDFDAVGRRTASFGVTEYRPGERRVDTFDRADQALYAAKKNG 348 Query: 252 RNRV 255 RNR+ Sbjct: 349 RNRI 352 >gi|254501785|ref|ZP_05113936.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222437856|gb|EEE44535.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 479 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 15/207 (7%) Query: 71 LVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-----ISSL 122 + ++S+T+ L + + G + + L S + L+ D LSGL N F S+ Sbjct: 258 IAMLSLTLGALAFGIAWRIGQLTRSLQKSEEQNRYLALHDNLSGLANRLQFNRVLETSTA 317 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 N++ +++ D+D FK +ND +GH GD VI ++ +L V G P V R+GG+EF Sbjct: 318 DLPNKRFAVLHCDLDKFKAVNDTYGHAAGDTVIKIMAKRLNEVVGKPGLVCRIGGDEFMV 377 Query: 183 AALGSSEQEAAILANDLRKIIENS--QINISSGPSIHITISAG--IAERCHKEPISTIIY 238 G + ++ L R +I + I I G + H+ +S G +A EP ++ Sbjct: 378 IYRGGTSRKD--LDTLCRALINKALLPIQIEGGNTAHVGLSIGVAVAPADGTEP-EDLVA 434 Query: 239 RADQALYVAKKSGRNRVVCFSDIENNT 265 R+D ALY AK GR + D+ +T Sbjct: 435 RSDAALYRAKDRGRGVHAFYEDLLKDT 461 >gi|168819011|ref|ZP_02831011.1| AdrA protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344077|gb|EDZ30841.1| AdrA protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084658|emb|CBY94449.1| Protein adrA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 370 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|159045360|ref|YP_001534154.1| response regulator [Dinoroseobacter shibae DFL 12] gi|157913120|gb|ABV94553.1| response regulator [Dinoroseobacter shibae DFL 12] Length = 462 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 12/169 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 +R+ Q + ID L+GL N + L + ++ +++ D D+FK+IND +GH Sbjct: 286 DRLRQ-AVIDPLTGLYNRRFALGQLSNIAQEALKTHRTFAVLLLDFDHFKKINDAYGHAA 344 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDKV+A + L + + R+GGEEF + EA +A LR I++ I + Sbjct: 345 GDKVLAETATLLRTRLRSLDVIARIGGEEFLMVLPDTDLDEARRVAERLRASIDDHPIAL 404 Query: 211 SSGP-SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255 G SI +TIS G+A P +S ++ AD+ALY AK GRN+V Sbjct: 405 PHGKGSIPVTISIGLAIGGAAAPEASVSELLETADRALYAAKSEGRNQV 453 >gi|118588080|ref|ZP_01545490.1| putative kinase/esterase [Stappia aggregata IAM 12614] gi|118439702|gb|EAV46333.1| putative kinase/esterase [Stappia aggregata IAM 12614] Length = 513 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 16/192 (8%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSY 125 + I++ ++ + +S S+ + S + +R D L+GL N F L G Sbjct: 301 IAIVAFALATKISRLSASLEE----SERKNRYFARHDALTGLANRHHFSDCLSFSLDGLP 356 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + SI D+D FK +ND +GH GD+VI ++D+L ++ G V R+GG+EF Sbjct: 357 DRGFSIFACDLDRFKPVNDTYGHEAGDRVICAVADRLRLLVGENGVVSRIGGDEFIVLLT 416 Query: 186 GSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRAD 241 +++A A LA D+ + I + I+I G + I +S GIA E E +I AD Sbjct: 417 QQMDRDALAALAGDICRSIADP-IDIDGGHKVGIGVSIGIASAPESGMSE--QDLIRMAD 473 Query: 242 QALYVAKKSGRN 253 ALY AK++GRN Sbjct: 474 MALYRAKETGRN 485 >gi|91204236|emb|CAJ71889.1| hypothetical protein kustc1144 [Candidatus Kuenenia stuttgartiensis] Length = 483 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 13/172 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFI-SSLGSYNEK------LSIVFFDIDYFKQINDNFGH 148 +Y +++ +D L+ L F+ SS Y + SI+ DID+FK ND +GH Sbjct: 191 NYEHAQKVAMVDELTSLYTRRYFLESSQREYRQAERRGEFFSIIMVDIDHFKYFNDTYGH 250 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-Q 207 +GD+V+ L+ L + + R GGEEF G+++ A A LR IE Sbjct: 251 LLGDEVLRKLASVLKLNARQSDVIARYGGEEFIILLPGTNKPGAVASAEKLRSAIEKKLA 310 Query: 208 INISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256 I + G +TI+AG+A C+ E + + AD+ LY+ KKSGRN++V Sbjct: 311 IEVGGGHKEKVTITAGVA--CYPEDGNNVEEVTASADRFLYLGKKSGRNKIV 360 >gi|127513682|ref|YP_001094879.1| diguanylate cyclase [Shewanella loihica PV-4] gi|126638977|gb|ABO24620.1| diguanylate cyclase [Shewanella loihica PV-4] Length = 518 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 78/163 (47%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + + L + DID+FK INDNFGH GDK Sbjct: 354 QKLNLLDTLTQLPNRAALEERMEQEFRNYQRHRHPLWVAVADIDHFKSINDNFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF S + L N +R+ ++N + Sbjct: 414 TLQVIAMALKNSLRESEFVARYGGEEFVLLIPDVSANDIEQLLNRVREKVKNIPFKFKN- 472 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A+ E IS RAD ALY AK R+RV+ Sbjct: 473 QRITVTVSIGAAQILENEQISETFERADAALYKAKHESRDRVI 515 >gi|238789818|ref|ZP_04633600.1| hypothetical protein yfred0001_29710 [Yersinia frederiksenii ATCC 33641] gi|238722177|gb|EEQ13835.1| hypothetical protein yfred0001_29710 [Yersinia frederiksenii ATCC 33641] Length = 499 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 104 SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 ++ D ++GL N ++L + S++ DID+FK IND +GH VGD+VI L+ Sbjct: 346 AQTDPMTGLYNRRGLATTLEPISQLEQHFSVIALDIDHFKAINDTYGHDVGDEVIKQLAV 405 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-IT 219 Q+ + R GGEEF G++ A +A+ LR +E I P+I IT Sbjct: 406 QIRESSRDTDILCRSGGEEFLMLLPGTTPDVAIQVAHRLRHNVEMMVI-----PNIRPIT 460 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS G+A + RAD+ALY AK GRNRV Sbjct: 461 ISLGVAYWSGDGIPEDALKRADEALYRAKDQGRNRV 496 >gi|229152247|ref|ZP_04280440.1| Sensory box/GGDEF family protein [Bacillus cereus m1550] gi|228631209|gb|EEK87845.1| Sensory box/GGDEF family protein [Bacillus cereus m1550] Length = 431 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 321 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 322 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 380 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 381 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 426 >gi|153002144|ref|YP_001367825.1| diguanylate cyclase [Shewanella baltica OS185] gi|151366762|gb|ABS09762.1| diguanylate cyclase [Shewanella baltica OS185] Length = 672 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 16/148 (10%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ FD D+FK+INDNFGH +GD+ + ++ + G +GR+GGEEF + Sbjct: 528 SVIIFDADHFKKINDNFGHELGDRALLTIASAGKALTGNKDLIGRIGGEEFLILLPNTDA 587 Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKEP-ISTIIYR 239 + A LA+ L+ I S++ P+ + +T+SAG+A E +++ ++++ R Sbjct: 588 ERACELAHQLQAHI--SRLGAEDLPTELKLTVSAGVATLAPQTNIENTYQDKDFASLLKR 645 Query: 240 ADQALYVAKKSGRNRVVCFSDIENN-TC 266 AD ALY AK +GRN C +N TC Sbjct: 646 ADDALYEAKNAGRN---CVKAAKNEATC 670 >gi|221067706|ref|ZP_03543811.1| diguanylate cyclase [Comamonas testosteroni KF-1] gi|220712729|gb|EED68097.1| diguanylate cyclase [Comamonas testosteroni KF-1] Length = 400 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 119/248 (47%), Gaps = 20/248 (8%) Query: 28 MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87 +++ SI F+ + F ++ +G + L L+LV I + SLL + Sbjct: 154 LLWLSIIFTAYT----FTRPALIWLLGYSDLRSLPRSPYWILTLVSI-LNFSLLFTVVMT 208 Query: 88 SI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQ 141 +I +KE + +++ + D L+ +LN +F + ++++ DID+FK+ Sbjct: 209 AIAVKE---TVDKLRKERDFDALTQVLNRRSFQEHAQKRLDDPRLYPMAVLACDIDHFKR 265 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GH GDKV+ +S L V R GGEEF G + +A ++A +++ Sbjct: 266 INDAWGHERGDKVLQLVSATLQNNVREQDLVARFGGEEFVMLLTGITPCDAELIAQRIQR 325 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV----VC 257 + + + SGP +T+S GI+ + + ADQ LY AK +GR+RV V Sbjct: 326 DLGSKNPVLPSGP--KLTMSFGISSITKSFQLEQALKEADQLLYQAKNAGRDRVHVSGVV 383 Query: 258 FSDIENNT 265 + D + T Sbjct: 384 YPDSSDKT 391 >gi|289207789|ref|YP_003459855.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] gi|288943420|gb|ADC71119.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] Length = 291 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 48 IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI- 106 I +F +G F L + L ++ +++ I I LL G S++ + S I +++R+ Sbjct: 47 IPIFTLGYLGFIPLNWGLYHSIPDLLVPI-IFLLGGSFVCSVVLLTYSSVESIRRITRLE 105 Query: 107 -----DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 D L+GL N L Y + LS+V DID FK IND GH GD + Sbjct: 106 HESITDPLTGLFNRRHMDRRLDEEVARSRRYGQPLSVVMLDIDEFKGINDRLGHLAGDYI 165 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--- 211 + ++ +L R GGEEF A + + A LA LR I + I + Sbjct: 166 LESIAQRLRQNLRRVDLAARFGGEEFVVIAPHTDQDAALQLAEKLRSEIAQTPIILKGHE 225 Query: 212 -----SGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +++T+S G+A E ++ ++ RAD ALY AK GRNR Sbjct: 226 HVPPCAPDELYVTVSVGVASLNIEPDSRDNADFLLQRADDALYRAKAGGRNR 277 >gi|197117720|ref|YP_002138147.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] gi|197087080|gb|ACH38351.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] Length = 306 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 20/182 (10%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S+ EL + ++ +L+ ID L+ L N L S E LS+V DIDYFK Sbjct: 126 SLQDELKKANEQLKRLTNIDHLTNLFNRRYLTEVLESEFFRARRNRENLSLVIIDIDYFK 185 Query: 141 QINDNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +ND +GH GD V +A L+ + + + + R GGEEF G+S + ++A Sbjct: 186 NVNDTYGHQNGDVVLASVAGLAQKQLRAYDS---AARYGGEEFVLVLPGTSLEGGKMVAE 242 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRN 253 LR+ + S + +TISAG+A P I ++ +AD+ALY AK++GRN Sbjct: 243 RLRQAVLEFAFP-SPMEDLTLTISAGVA--TFPSPSIDNIDSLFRQADEALYRAKQTGRN 299 Query: 254 RV 255 RV Sbjct: 300 RV 301 >gi|59712246|ref|YP_205022.1| GGDEF domain-containing protein [Vibrio fischeri ES114] gi|59480347|gb|AAW86134.1| GGDEF domain protein [Vibrio fischeri ES114] Length = 490 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 93 LFISYNRISQ-----LSRIDCLSGLLNHSAFISSLGSYNEKLSIVF--FDIDYFKQINDN 145 +F +R+SQ L++ D ++GL N F SL K + F +DID FKQIND Sbjct: 319 MFYYQSRVSQKYYRDLAKQDPMTGLYNRRGFEMSLQDRVVKKYVGFAIYDIDDFKQINDV 378 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH VGD+ I +++ L V R GGEEF S + +RK I++ Sbjct: 379 FGHDVGDEAIKYVARMLNKSVRDSDIVSRFGGEEFVICINAESRNSLESVCERVRKSIQD 438 Query: 206 SQINISSGPSIHITISAGIAE-RCHKE-PISTIIYRADQALYVAKKSGRNRV 255 S + G T+S G+ H+E +I +AD LY AK+ G+NRV Sbjct: 439 SSGKVVKGG---FTVSGGVTVIDSHQEFSFEHVIKKADALLYKAKQDGKNRV 487 >gi|83643204|ref|YP_431639.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631247|gb|ABC27214.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 578 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 24/183 (13%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138 SG + + L I R + D L+ L N A+ + + Y L++V DID Sbjct: 402 SGEVRERLEIERAR----ALTDALTALPNREAYENRVRDEFERWRRYGNPLTLVVADIDR 457 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK++ND FGH GDKVI + ++ F+ R GGEEF E A+I A Sbjct: 458 FKEVNDKFGHLAGDKVIQLIGKEVSRRIRKTDFIARYGGEEFVVLL---PETPASIAA-- 512 Query: 199 LRKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 ++++ ++ IS P + IT+S G+ E + + +ADQALY AK+SGR Sbjct: 513 --EVMDKTREMISRLPFHFRNEKVRITMSFGVCEFHGDATVQGVFEKADQALYKAKRSGR 570 Query: 253 NRV 255 N+V Sbjct: 571 NQV 573 >gi|326797287|ref|YP_004315107.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326548051|gb|ADZ93271.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 590 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 86/171 (50%), Gaps = 25/171 (14%) Query: 102 QLSRIDCLSGLLNHSAF-----ISSLGSYNEKLSIVFF--DIDYFKQINDNFGHPVGDKV 154 + S D L+GL N F + L + + SI F DID+FK++ND FGH VGD+ Sbjct: 430 EQSNQDELTGLYNRRGFNVGFDRALLTAQQQSRSIAFVICDIDHFKRVNDLFGHTVGDQA 489 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK------IIENSQI 208 + ++D L V R GGEEFA +G S++E N +R+ + EN Sbjct: 490 LQVVADVLKSQVRQHDIVARYGGEEFALVMVGMSQEEILSRLNKVRQAFLERPVCENH-- 547 Query: 209 NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVC 257 HIT+S GIA R + T+I AD+ LY AK +GR+++V Sbjct: 548 --------HITMSFGIAYRNNSASHAPQTLITEADEKLYQAKNTGRDKIVA 590 >gi|291286797|ref|YP_003503613.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] gi|290883957|gb|ADD67657.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] Length = 396 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 1/127 (0%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 I+ DIDYFK +NDN+GH +GD+V+ L+ L F R GGEEF + Sbjct: 270 IMLVDIDYFKNVNDNYGHLIGDQVLKHLAKLLKDSIRKTDFAFRYGGEEFLIMLTNVDVR 329 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 A +A +RK ++ + ++ S ++T S GIA + ++I RAD+ LY AK++ Sbjct: 330 NATHVAEQIRKKLKETNFSLKEN-SFNVTASFGIALFEKDDTQESVIKRADERLYKAKQT 388 Query: 251 GRNRVVC 257 GRN++V Sbjct: 389 GRNKIVS 395 >gi|206970971|ref|ZP_03231922.1| putative sensory box/GGDEF family protein [Bacillus cereus AH1134] gi|206733743|gb|EDZ50914.1| putative sensory box/GGDEF family protein [Bacillus cereus AH1134] Length = 430 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425 >gi|126667729|ref|ZP_01738697.1| response regulator receiver domain protein (CheY-like) [Marinobacter sp. ELB17] gi|126627832|gb|EAZ98461.1| response regulator receiver domain protein (CheY-like) [Marinobacter sp. ELB17] Length = 511 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 13/176 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL + + +S D L+GL N F + L ++ +S+V DIDYFK ND Sbjct: 329 ELNKTKRELETISLTDALTGLANRRHFDAYLEQEWSRALRQSQPISMVMLDIDYFKAFND 388 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GHP GD+ + ++ L V P R GGEEF A + Q+AA +A R I Sbjct: 389 AYGHPRGDQCLKQVARALEQVMRRPTDLAARYGGEEF--ALVLPDTQDAATVAEACRVAI 446 Query: 204 ENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I + SG + ITIS G+ K + +I +AD ALY AK++GRN+V+ Sbjct: 447 QALGIVHEFSGVAPVITISVGVCSLVPTRKMSPAVLIQQADDALYDAKEAGRNQVL 502 >gi|330504721|ref|YP_004381590.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328919007|gb|AEB59838.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 367 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 96/199 (48%), Gaps = 19/199 (9%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122 +L ++ S + LL ++ K +F+ + ++ + ID L+GL N + + L Sbjct: 174 HLIWILASFSFGLLSAFLLEKAHKRMFLHQDSLALSANIDSLTGLWNRARTLHFLVEEAA 233 Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLG 176 Y S+V DID+FK +ND GH +GD V+ L + + VV VGRLG Sbjct: 234 RANRYGTPFSVVLIDIDHFKSVNDTHGHAIGDSVLRQFAGLLRNGVRVVDK----VGRLG 289 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236 GEEF + + A L+K I + S S GIAE E + ++ Sbjct: 290 GEEFLIVLPETDVEHAERAVQVLQKRINGFSFDRVERKS----ASFGIAEYRPGESLDSL 345 Query: 237 IYRADQALYVAKKSGRNRV 255 + RADQA+Y AK +GR+R+ Sbjct: 346 MERADQAMYQAKANGRDRI 364 >gi|325914022|ref|ZP_08176378.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325539791|gb|EGD11431.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 324 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 78/163 (47%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY------NEKL-SIVFFDIDYFKQINDNFGHPVGD 152 + +L+ +D L+GL N +L E+L S++ D+D+FK++ND +GH GD Sbjct: 162 LEELASLDALTGLPNRRMLERALTHQIDQRQPQERLNSLIILDLDHFKEVNDLYGHAAGD 221 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ L+ L P V R GGEEF S E LRK+I N Sbjct: 222 AALSDLATILRYEVREPHQVFRFGGEEFVVLLRAGSLAELEAATERLRKVIRNGL----R 277 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 GP IT+S G A + RAD ALY+AK SGR+ V Sbjct: 278 GPGGRITVSLGAARHDGETHWQDWFSRADAALYLAKNSGRDSV 320 >gi|325497330|gb|EGC95189.1| hypothetical protein ECD227_1427 [Escherichia fergusonii ECD227] Length = 321 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 104 SRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L + +K ++ DID FK +ND GH +GD V+ L Sbjct: 139 SNMDILTGLPGRRVLDESFDRQLLNAEPDKFYLLLLDIDRFKSVNDTLGHLIGDVVLRTL 198 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ L V R GGEEF +++ +A + + ++I +QI G +HI Sbjct: 199 AENLATWMRHNESVYRYGGEEFVIMIKAATDVDACMAGLRICELIAGNQIAYPQG-ELHI 257 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T +AGI+ E + ++ RAD+A+Y K +GRNR + + E Sbjct: 258 TATAGISRAKPGETLDVVMGRADRAMYQGKLTGRNRCMFMDENEQ 302 >gi|307266387|ref|ZP_07547925.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter wiegelii Rt8.B1] gi|326391146|ref|ZP_08212692.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter ethanolicus JW 200] gi|306918623|gb|EFN48859.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter wiegelii Rt8.B1] gi|325992845|gb|EGD51291.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter ethanolicus JW 200] Length = 554 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 10/172 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +++ S D L+ N F +L +E +S++ FD+D FK IND +GH Sbjct: 383 YYEVTKKSITDPLTKTYNRRYFNDALMENIMRADETSEPVSLIMFDLDNFKLINDTYGHL 442 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ ++ ++ + V R GGEEFA + ++A ++A +R + + I Sbjct: 443 VGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRNEVSSRPIR 502 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259 G I++TI+ G+A+ K + +I AD+ALY KS GRN++ + Sbjct: 503 TDKG-DIYVTITGGVADYPEKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553 >gi|114561982|ref|YP_749495.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114333275|gb|ABI70657.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 321 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 12/165 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +L+ D L+GL N +F S Y + S++ DID FK++ND +GH VG Sbjct: 158 KLERLANTDPLTGLFNRRSFTSFCEHEFFRATRYFQPFSLMIIDIDLFKKVNDTYGHLVG 217 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI +++ + R+GGEEFA + A +LA LR+ Q Sbjct: 218 DEVIKRVANICNEHVREADVLARIGGEEFAILLPDTDIDSAYVLAERLREA--QQQYEEQ 275 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 PS ITIS G+A R + I RAD+ALY +K GRN V Sbjct: 276 KTPS--ITISIGVATLRSQDKAFLEIFKRADKALYSSKNVGRNSV 318 >gi|323937364|gb|EGB33642.1| GGDEF domain-containing protein [Escherichia coli E1520] gi|323962309|gb|EGB57898.1| GGDEF domain-containing protein [Escherichia coli H489] gi|323973712|gb|EGB68887.1| GGDEF domain-containing protein [Escherichia coli TA007] Length = 298 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH GD V+ L Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLTGDVVLRTL 190 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF +++++A + ++++N I S G I+I Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEDACRAGVRICQLVDNHAITHSEG-HINI 249 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 250 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293 >gi|316933824|ref|YP_004108806.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] gi|315601538|gb|ADU44073.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] Length = 861 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 13/163 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVG 151 +RI L+ D L+GL N S+F LG E +L++++ DID FK +ND GHPVG Sbjct: 423 SRIHHLAHYDDLTGLPNRSSFRKHLGDALELIEPGDQLALLYIDIDEFKIVNDTLGHPVG 482 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209 D+++ ++++L +V RLGG+EFA A + A L LR+ + + Sbjct: 483 DQLLKCIAERLQRCLAQADYVARLGGDEFAVVMADATTVRDLVATLQLALRETFDCAGHV 542 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 IS SI I ++ + + +I +AD ALY AK GR Sbjct: 543 ISPDASIGIALAPE-----NGREVDDLIAKADLALYAAKSEGR 580 >gi|258514935|ref|YP_003191157.1| diguanylate cyclase with PAS/PAC sensor [Desulfotomaculum acetoxidans DSM 771] gi|257778640|gb|ACV62534.1| diguanylate cyclase with PAS/PAC sensor [Desulfotomaculum acetoxidans DSM 771] Length = 512 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++ L+ D L+G+ N F +S YN S++ D+D+FKQINDN+GH GD Sbjct: 344 LNHLASRDALTGVYNRRYFAELSSLELSKSRRYNMPASLIILDLDFFKQINDNYGHQAGD 403 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINI 210 V+ ++D + +GR GGEEF + ++ +++N +I+ N S + Sbjct: 404 TVLKEIADICRKSIRSIDILGRYGGEEFVIFLPNTKLEDCRMVSN---RILNNIASAVIC 460 Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 G SI +T S G + E E + + ADQALY AK GRN Sbjct: 461 YEGKSIKVTASIGTSGVEFVSDENLDHFLKTADQALYQAKLDGRN 505 >gi|296135034|ref|YP_003642276.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12] gi|295795156|gb|ADG29946.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12] Length = 801 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 13/201 (6%) Query: 69 LSLVIISITISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125 L+++ T+ + + S +++K+ L ++ + + + D L+GL N F+ L Sbjct: 167 LTVLAFGATLMMTVEGFSRALIKDNLRLTKAFKALRRFALRDELTGLANRRIFLDHLNEL 226 Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 N+ L+I D+D FK +ND GH +GD+++ + +L V + R GG+EF Sbjct: 227 MQRRPNQTLTIGLMDLDRFKSVNDRLGHIIGDQLLVAVGQRLRGVLREGDLLARFGGDEF 286 Query: 181 AAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STII 237 G S+EQ+ + +A L IE I G S+ I +S G+ + P+ T++ Sbjct: 287 VVLLPGYSTEQQLSYIAKRLVNCIEAP--FIIQGNSLQIGLSLGLVVQQPDAPVDAQTLV 344 Query: 238 YRADQALYVAKKSGRNRVVCF 258 RAD A+Y AKK+GR + F Sbjct: 345 RRADMAMYAAKKNGRQQYRIF 365 >gi|229514151|ref|ZP_04403612.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21] gi|229348131|gb|EEO13089.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21] Length = 627 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKL--SIVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ S+ DID+FK+IND FGH Sbjct: 458 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSSLAIIDIDHFKRINDKFGH 517 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 518 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 570 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 571 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 622 >gi|281417537|ref|ZP_06248557.1| diguanylate cyclase with TPR repeats [Clostridium thermocellum JW20] gi|281408939|gb|EFB39197.1| diguanylate cyclase with TPR repeats [Clostridium thermocellum JW20] Length = 1826 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 8/130 (6%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 ++SI+ DID FK INDN+GH GD++++ + + L+ R GGEEF + Sbjct: 1516 QMSIIMIDIDKFKSINDNYGHQKGDEILSKVGNILLKNIRPTDICCRYGGEEFVIILPDT 1575 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQAL 244 EA LA LR +E +++ G +TIS GI+ C H + +I +ADQAL Sbjct: 1576 GPSEAEALAERLRSTVEKARL---MGQGNSLTISLGIS--CYPKHGSIRNELIEKADQAL 1630 Query: 245 YVAKKSGRNR 254 Y AK+SGRNR Sbjct: 1631 YHAKESGRNR 1640 >gi|39998060|ref|NP_954011.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] gi|39985005|gb|AAR36361.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] gi|298507001|gb|ADI85724.1| sensor diguanylate cyclase, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 315 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ + N SL S E++ I+F D+D+FKQIND GH GD Sbjct: 135 LQRLALCDPLTTIANRRYVEMSLNSRLEEMRRYGWHFGILFLDVDHFKQINDTHGHDTGD 194 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ LV + VGR GGEEF A S ++ +A+ R ++E S + Sbjct: 195 RVLKMVAKTLVNSARSFDVVGRWGGEEFIAVLANISRRQLPRIADRFRHLVEQSSFRLDD 254 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + +T+S G + + +++ RAD +Y +K++GRN Sbjct: 255 -RLLRVTVSVGATMSHLDDTVESLVQRADTLMYRSKQAGRN 294 >gi|33602551|ref|NP_890111.1| hypothetical protein BB3576 [Bordetella bronchiseptica RB50] gi|33576990|emb|CAE34070.1| putative conserved membrane protein [Bordetella bronchiseptica RB50] Length = 540 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQIND 144 ++ +++ + ++ Q S D L+GLLN ++ + + ++++ DID FK IND Sbjct: 345 AVRRKIGTKFEQLRQDSLTDPLTGLLNRRGLEEYLRNTPWQDGAMTVLALDIDRFKIIND 404 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+VI L+ L T + RLGGEEFA +A LA +R+ IE Sbjct: 405 THGHAAGDEVIQSLAGILRSSARTKDVLARLGGEEFAVLLPDVDVPQAPQLAERIRRSIE 464 Query: 205 NSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255 + + T+S G+A C H + ++ AD+ALY AK GRNR Sbjct: 465 AAPTEA----GVSYTVSIGVA--CYPAHGASLEAVMRCADEALYAAKAGGRNRT 512 >gi|317970197|ref|ZP_07971587.1| diguanylate cyclase [Synechococcus sp. CB0205] Length = 159 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 12/145 (8%) Query: 120 SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 +G +N+ + DID FK IND +GHP GD+VI LS V + +GRLG Sbjct: 4 QQIGQFNQNHCLCVVALIDIDRFKSINDTYGHPAGDEVICQLSTLFRDVIPSGDLIGRLG 63 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-----CHKE 231 G+EFA L S+E+ AA+L + LR+ + ++ G + T+S G+A+ C+ Sbjct: 64 GDEFAVLMLESAEEAAAVLES-LRRQVAARSWRLNDGSLVQFTLSIGMADSRLARVCN-- 120 Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256 I ++ AD LY AK +G N +V Sbjct: 121 -IDELLAAADVGLYAAKGNGGNNLV 144 >gi|298291635|ref|YP_003693574.1| diguanylate cyclase [Starkeya novella DSM 506] gi|296928146|gb|ADH88955.1| diguanylate cyclase [Starkeya novella DSM 506] Length = 381 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 7/154 (4%) Query: 107 DCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ LLN F + + S++F DID+FK+IND GH GD VI + + Sbjct: 228 DHLTPLLNRRGFEEEANRRLVALHGAPASLIFCDIDHFKKINDGHGHAAGDAVIRAVGEL 287 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + GR+GGEEF ++A LA LR I + ++ + + S Sbjct: 288 IAGELRREDCAGRIGGEEFVILLARGGLEDARALAERLRTRI--GALEVAPLAAGALAAS 345 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 GIAE EP+ ++ RAD+ LY AK+ GRN+V Sbjct: 346 FGIAEAGPDEPLDEVMERADERLYRAKRGGRNQV 379 >gi|294637645|ref|ZP_06715924.1| sensory box/GGDEF family protein [Edwardsiella tarda ATCC 23685] gi|291089200|gb|EFE21761.1| sensory box/GGDEF family protein [Edwardsiella tarda ATCC 23685] Length = 452 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 23/186 (12%) Query: 88 SILKELFISYNRISQLSR-------IDCLSGLLNHSAFISS----LGSYNEKLSIVFFDI 136 + L+EL ++ +L++ ID L+G+ N + I L +++ FD+ Sbjct: 264 TALRELAAQREQLERLNQALTLQANIDYLTGIRNRRSLIQQFAAMLAQSGSLVALALFDL 323 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAIL 195 DYFK ND +GH GD+ + + +D L F P +GR GGEEF L S+E L Sbjct: 324 DYFKHYNDTYGHQAGDEALVYFADALRHHFREPESLIGRFGGEEF--IVLCSAEHACGAL 381 Query: 196 A--NDLRKIIENSQINISSGPSIHITISAG--IAERCHKEP--ISTIIYRADQALYVAKK 249 A + LR+ ++ G H+T+S G + R P +++ AD+ LY AK Sbjct: 382 ARLDSLRETLDYGSDKALQG---HLTVSIGCVLLPRQSVTPNDFDALVHHADEMLYQAKN 438 Query: 250 SGRNRV 255 SGRNR+ Sbjct: 439 SGRNRL 444 >gi|257094363|ref|YP_003168004.1| diguanylate cyclase with hemerythrin-like metal-binding domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046887|gb|ACV36075.1| diguanylate cyclase with hemerythrin-like metal-binding domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 483 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 13/173 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + + Q++ D L+G N + L Y++ LS++ DID+FK IN Sbjct: 152 QELQQTVVELEQVAGTDKLTGAWNRRRIEECVRSEMDRLNRYDQPLSLLVVDIDHFKAIN 211 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+V+ ++ L + R GGEEF + AA+LA LR Sbjct: 212 DQHGHGAGDQVLQAVTALLQSRLRGTDALARWGGEEFVVVCPNTGRSTAALLAERLR--- 268 Query: 204 ENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 QI + P I +T+S G AE + RAD+ALY AK GRN+V Sbjct: 269 --GQIASADFPLIGQLTVSIGAAECSPGDTWEEWFQRADEALYRAKTGGRNQV 319 >gi|171319581|ref|ZP_02908678.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria MEX-5] gi|171095192|gb|EDT40187.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria MEX-5] Length = 516 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVG 151 I L+R D L+GL N + LG + L++++ D+D FK IND FGH G Sbjct: 338 IRHLARHDALTGLPNRHELHAELGRRLAHRPRVPSPALAVMYLDLDGFKAINDRFGHQAG 397 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++++L R+GG+EF A ++ Q +ILA + + I ++ +S Sbjct: 398 DEVLTLVAERLGKTLPPGELAARIGGDEFVVAIDDTTMQACSILAARIIRQI-SAPYTLS 456 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 G ++ + IS GIA + H P +I +AD ALY AK G+ Sbjct: 457 IGATVSLGISIGIALDDGHGSP-DELIRQADSALYDAKSGGKG 498 >gi|188586921|ref|YP_001918466.1| diguanylate cyclase with GAF sensor [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351608|gb|ACB85878.1| diguanylate cyclase with GAF sensor [Natranaerobius thermophilus JW/NM-WN-LF] Length = 597 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 8/175 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEK-LSIVFFDIDYFKQINDNFGHP 149 + + ++ L+ D + L N+ F L Y E+ L+++ DID FK ND FGHP Sbjct: 392 LHHQKVEDLAVTDEKTNLYNYRYFYKQLEQAIYDYPERSLTMLMIDIDDFKLYNDRFGHP 451 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208 GD+V+ +S L R GGEEF+ LG+ EA +A +R I N Sbjct: 452 AGDEVLEIISKLLKDNIRDRDIACRYGGEEFSVLLLGARGIEAEKIAERIRSAIANYPFP 511 Query: 209 NISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYV-AKKSGRNRVVCFSDI 261 P + +T+S G AE S ++ ++DQALY+ +KK G+NRV F I Sbjct: 512 GDEKTPKVKLTVSIGGAEYPQDGTSSMDLMRKSDQALYLGSKKQGKNRVSMFKKI 566 >gi|71906348|ref|YP_283935.1| response regulator receiver modulated diguanylate cyclase [Dechloromonas aromatica RCB] gi|71845969|gb|AAZ45465.1| response regulator receiver modulated diguanylate cyclase [Dechloromonas aromatica RCB] Length = 322 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 20/211 (9%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 G + L + +S V++ + +L + +E+ + ++ +++ +D L+G+ N F Sbjct: 115 GADDFLYKPVSEVVLLAKVRAMLRIATRQ--QEICAVHRQLKEIAILDSLTGIPNRRHFD 172 Query: 120 SSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD----KVIAFLSDQLVVVFGT 168 +L + ++ LSIV D+D+FKQ ND +GH GD V + LS+ L V T Sbjct: 173 DTLAAEWKRCIRTETPLSIVISDVDFFKQFNDIYGHQAGDVCLKAVASSLSESLFRVEDT 232 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 V R GGEEF A G+ A +A +R+ + I G I+ S G+A C Sbjct: 233 ---VARYGGEEFVAILPGTDANGAYAVAERMRQSARDLCIPHERGIDGRISCSFGVASTC 289 Query: 229 ---HKEPISTIIYRADQALYVAKKSGRNRVV 256 K P ++ AD LY AK++GRNRV Sbjct: 290 PSADKAP-QQLLRTADAGLYAAKRAGRNRVA 319 >gi|324114240|gb|EGC08213.1| GGDEF domain-containing protein [Escherichia fergusonii B253] Length = 452 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 15/161 (9%) Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N S F + L N+ ++ DID+FK +ND +GHP GDKVI + D Sbjct: 285 DPLTNIFNRSYFFNELKGQVNSGDNKPFCVMIMDIDHFKSVNDTWGHPEGDKVIKAVVDI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF +E LA +RK +E N Q I+ +I Sbjct: 345 IGKSIRPDDVLARVGGEEFGVMLTHLERKEGEELAERIRKNVEQLTDNNPQYAIAQKVTI 404 Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 I + + H IYR AD ALY AK +GRN+V+ Sbjct: 405 SIGVVVTQGDVLHPND----IYRLADNALYNAKATGRNKVI 441 >gi|313498686|gb|ADR60052.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1] Length = 343 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 13/193 (6%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSR-IDCLSGLLNHSAFISSLGSYNEK--- 128 ++S T SL + LK +R++ ++ D L+GL N AF + + + + Sbjct: 142 VVSATQSLSSALTTAWRLKHEMQRAHRLAMVASCTDELTGLNNRRAFFDNASAQHVRCRD 201 Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 ++++ D+D+FKQIND FGH GD+V+ + + GRLGGEEFA Sbjct: 202 TGTFMAVLMLDVDHFKQINDTFGHAAGDQVLQRIGAAISTSLRDNDIAGRLGGEEFAILL 261 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243 + A +A LR I +N P +T S G+A + + ++ AD A Sbjct: 262 PNTPPDTAIEVAERLRARIAKLCVN-EQHP---VTASIGLAFAKAPATELGALLSSADSA 317 Query: 244 LYVAKKSGRNRVV 256 +Y++K SGRNRV Sbjct: 318 MYLSKVSGRNRVT 330 >gi|225376136|ref|ZP_03753357.1| hypothetical protein ROSEINA2194_01773 [Roseburia inulinivorans DSM 16841] gi|225212031|gb|EEG94385.1| hypothetical protein ROSEINA2194_01773 [Roseburia inulinivorans DSM 16841] Length = 360 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 104/204 (50%), Gaps = 12/204 (5%) Query: 64 ILVENLSLVII--SITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFIS 120 +L++ L+ + I IT +++ +++ + YN ++ +L+ +D L+GL N + Sbjct: 157 VLIQILNTIFIFAQITAVMIIFTKDAQKMEQKLVRYNTKLQKLASVDALTGLWNRRSMWE 216 Query: 121 SLGS--YNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 + + Y+ ++ SI DID+FK+IND +GH GDKV+ ++ + T V Sbjct: 217 YIRAVEYDYEVGNAGFVSIAIADIDFFKKINDTYGHDAGDKVLKAVAGLFMDKMKTYGRV 276 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232 R GGEEF G + A ++ I + + I IT++ G+ E + Sbjct: 277 CRWGGEEFLFVFYGRNGDAAYDALQEIYDEIHRLTVPYEN-EEIRITMTFGLEEYDQNDG 335 Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256 + T I RAD+ LY K++GR+++V Sbjct: 336 METAIRRADEKLYQGKETGRDKIV 359 >gi|218233425|ref|YP_002368848.1| putative sensory box/GGDEF family protein [Bacillus cereus B4264] gi|228960311|ref|ZP_04121964.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|296504538|ref|YP_003666238.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] gi|218161382|gb|ACK61374.1| putative sensory box/GGDEF family protein [Bacillus cereus B4264] gi|228799335|gb|EEM46299.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|296325590|gb|ADH08518.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] Length = 430 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKIAIILFDIDNFKTVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425 >gi|125973335|ref|YP_001037245.1| diguanylate cyclase [Clostridium thermocellum ATCC 27405] gi|125713560|gb|ABN52052.1| diguanylate cyclase [Clostridium thermocellum ATCC 27405] Length = 1826 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 8/130 (6%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 ++SI+ DID FK INDN+GH GD++++ + + L+ R GGEEF + Sbjct: 1516 QMSIIMIDIDKFKSINDNYGHQKGDEILSKVGNILLKNIRPTDICCRYGGEEFVIILPDT 1575 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQAL 244 EA LA LR +E +++ G +TIS GI+ C H + +I +ADQAL Sbjct: 1576 GPSEAEALAERLRSTVEKARL---MGQGNSLTISLGIS--CYPKHGSIRNELIEKADQAL 1630 Query: 245 YVAKKSGRNR 254 Y AK+SGRNR Sbjct: 1631 YHAKESGRNR 1640 >gi|330502902|ref|YP_004379771.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328917187|gb|AEB58018.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 644 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 12/179 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L++L + R+++L+R D L+GL N L + L+I+ D+D+FKQ+ Sbjct: 460 LQQLSNANLRLAELNRRDGLTGLFNRQTLSEELARACARAERSRQSLAILMMDLDHFKQV 519 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRK 201 ND GH GD + + ++ + + R GGEEF A L S++ A+ LA LR+ Sbjct: 520 NDRHGHLAGDACLRHAAQRIQQRLRSSDLLARFGGEEF-VALLDSTDLTGALDLAEQLRE 578 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258 I + + SI +++S G+ +P + AD+ALY AK GRNRVV + Sbjct: 579 DIARTPCSYQQ-QSIPLSLSIGLHAGVPSDPCCGEHWLELADRALYRAKSDGRNRVVSY 636 >gi|309780685|ref|ZP_07675426.1| periplasmic sensor diguanylate cyclase (GGDEF domain) [Ralstonia sp. 5_7_47FAA] gi|308920367|gb|EFP66023.1| periplasmic sensor diguanylate cyclase (GGDEF domain) [Ralstonia sp. 5_7_47FAA] Length = 585 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 9/163 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 +S+++ D L+ LLN AF G+ + ++++ FDID+FK+IND +GH VGD Sbjct: 405 LSRMAETDPLTQLLNRRAFEDRAGAMCKSPQPKARLIALIMFDIDHFKRINDTYGHAVGD 464 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + ++ + V R+GGEEFA S +A +A+ LR I + + Sbjct: 465 EALRTVARLCRAEGPSADMVARIGGEEFAVMVWADSLAQARAVADHLRHRIAEVTVPTGT 524 Query: 213 GPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRN 253 +T S G+ A + ++ RAD LY AK +GRN Sbjct: 525 DLPCRMTASFGVAAAPAADGPQLEPLLRRADHLLYAAKLAGRN 567 >gi|153000773|ref|YP_001366454.1| diguanylate cyclase [Shewanella baltica OS185] gi|151365391|gb|ABS08391.1| diguanylate cyclase [Shewanella baltica OS185] Length = 342 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 10/177 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139 G ++ L +S + D L+ L N A+ S+ + + S++ DID F Sbjct: 162 GQEVQNLKSEMENLSLAAMTDQLTSLHNRRAYELSIQDQIYLPQDHQTRCSLLLIDIDNF 221 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K ND +GH GDKV+A+++ L FV R GGEEF + +A +A +L Sbjct: 222 KAFNDTYGHLTGDKVLAYVALALKQCVRGDDFVARYGGEEFVVVLPNTHFHDALQVAENL 281 Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 R+ I ++ I + IT+S G+A + T+ RAD+ALY AK GRN Sbjct: 282 RERISERRLTIGKDKKLSLGAITVSIGLASLQQGDDAETLFSRADKALYQAKAEGRN 338 >gi|160875482|ref|YP_001554798.1| diguanylate cyclase [Shewanella baltica OS195] gi|217973268|ref|YP_002358019.1| diguanylate cyclase [Shewanella baltica OS223] gi|304408814|ref|ZP_07390435.1| diguanylate cyclase [Shewanella baltica OS183] gi|307302817|ref|ZP_07582572.1| diguanylate cyclase [Shewanella baltica BA175] gi|160861004|gb|ABX49538.1| diguanylate cyclase [Shewanella baltica OS195] gi|217498403|gb|ACK46596.1| diguanylate cyclase [Shewanella baltica OS223] gi|304352635|gb|EFM17032.1| diguanylate cyclase [Shewanella baltica OS183] gi|306913177|gb|EFN43599.1| diguanylate cyclase [Shewanella baltica BA175] gi|315267669|gb|ADT94522.1| diguanylate cyclase [Shewanella baltica OS678] Length = 342 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 10/177 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139 G ++ L +S + D L+ L N A+ S+ + + S++ DID F Sbjct: 162 GQEVQNLKSEMENLSLAAMTDQLTSLHNRRAYELSIQDQIYLSQDHQTRCSLLLIDIDNF 221 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K ND +GH GDKV+A+++ L FV R GGEEF + +A +A +L Sbjct: 222 KAFNDTYGHLTGDKVLAYVALALKQCVRGDDFVARYGGEEFVVVLPNTHFHDALQVAENL 281 Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 R+ I ++ I + IT+S G+A + T+ RAD+ALY AK GRN Sbjct: 282 RERISERRLTIGKDKKLSLGAITVSIGLASLQQGDDAETLFSRADKALYQAKAEGRN 338 >gi|30022131|ref|NP_833762.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579] gi|229047736|ref|ZP_04193316.1| Sensory box/GGDEF family protein [Bacillus cereus AH676] gi|29897688|gb|AAP10963.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579] gi|228723528|gb|EEL74893.1| Sensory box/GGDEF family protein [Bacillus cereus AH676] Length = 431 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKIAIILFDIDNFKTVNDTYGHD 321 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 322 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 380 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 381 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 426 >gi|269966127|ref|ZP_06180217.1| hypothetical protein VMC_16470 [Vibrio alginolyticus 40B] gi|269829274|gb|EEZ83518.1| hypothetical protein VMC_16470 [Vibrio alginolyticus 40B] Length = 361 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 9/171 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NE------KLSIVFFDIDYFKQINDN 145 L I ++ L+ D L+G+ N F+ + S NE + D+D FK +ND Sbjct: 184 LHIQIMKMEHLATTDDLTGIPNRREFMRQIESRLNEYRIQGIDFHVAILDLDNFKSLNDR 243 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH GDK + + + + R+GGEEFA S Q+A +R +E Sbjct: 244 FGHDAGDKSLIHAVNTIKSHLLDCDLLARVGGEEFAIVLRSRSSQQALDTLETIRNALET 303 Query: 206 SQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 + + SG + T S G+ + C + ++ RAD ALY AK++GRNRV Sbjct: 304 TTVQ-HSGCDMSFTASIGVTQVCRLDDSFEPLVKRADLALYKAKETGRNRV 353 >gi|261253187|ref|ZP_05945760.1| GGDEF family protein [Vibrio orientalis CIP 102891] gi|260936578|gb|EEX92567.1| GGDEF family protein [Vibrio orientalis CIP 102891] Length = 323 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 15/168 (8%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 S D L+GLLN L + + + D+D+FK IND FGH +GD+V Sbjct: 142 SERDKLTGLLNRRTLEERLTRCFDLVPGDVDGLNMWVAIIDLDHFKNINDTFGHMIGDEV 201 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + Q+ F + R GGEEF +Q+ + R +IE + P Sbjct: 202 LLLFAQQMQNYFCNNEQLFRFGGEEFVIIFPPQEKQQVLNTLENFRSLIEQYRF-----P 256 Query: 215 SIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 ++ +T S G+ + + TI+ AD+ALY AK+SGRN++ C+ D+ Sbjct: 257 QVNKVTFSCGLCVISRTQYLPTILDHADKALYFAKESGRNQIQCYEDL 304 >gi|256005442|ref|ZP_05430405.1| diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Clostridium thermocellum DSM 2360] gi|255990582|gb|EEU00701.1| diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Clostridium thermocellum DSM 2360] gi|316940432|gb|ADU74466.1| diguanylate cyclase with TPR repeats [Clostridium thermocellum DSM 1313] Length = 1826 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 8/130 (6%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 ++SI+ DID FK INDN+GH GD++++ + + L+ R GGEEF + Sbjct: 1516 QMSIIMIDIDKFKSINDNYGHQKGDEILSKVGNILLKNIRPTDICCRYGGEEFVIILPDT 1575 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQAL 244 EA LA LR +E +++ G +TIS GI+ C H + +I +ADQAL Sbjct: 1576 GPSEAEALAERLRSTVEKARL---MGQGNSLTISLGIS--CYPKHGSIRNELIEKADQAL 1630 Query: 245 YVAKKSGRNR 254 Y AK+SGRNR Sbjct: 1631 YHAKESGRNR 1640 >gi|153002516|ref|YP_001368197.1| diguanylate cyclase [Shewanella baltica OS185] gi|151367134|gb|ABS10134.1| diguanylate cyclase [Shewanella baltica OS185] Length = 605 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 10/177 (5%) Query: 89 ILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQIND 144 +L++ +S N ++ +++ D L+GL N F L + + + ++ D+DYFK ND Sbjct: 424 VLQQALVSANTQLKEMAETDELTGLANRRPFTERLEAVLQTKTPAGLLMLDVDYFKSYND 483 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 +GH GD V+ ++D LV P + R+GGEEFA S + +A L + Sbjct: 484 TYGHIEGDLVLKRVADALVQCDILPHNALLARIGGEEFALVVEHVSPAQLTAIATQLCYL 543 Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E I + P +TIS G ++ + ++ RAD LY AK GRNRV Sbjct: 544 VEQLSIPHQASPLAVVTISIGCVFLPLDKVSGLKMPDVLRRADVCLYRAKDKGRNRV 600 >gi|295106345|emb|CBL03888.1| diguanylate cyclase (GGDEF) domain [Gordonibacter pamelaeae 7-10-1-b] Length = 327 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 15/168 (8%) Query: 95 ISYNR-ISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 ++Y++ + + + +D ++GL NH AF +L + D+D FK +ND GHP Sbjct: 164 LAYSKALERRAELDPMTGLFNHVAFEGHVCEALARGASGGTFFMIDLDDFKLVNDTLGHP 223 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AALGSSEQEAAILANDLRKIIENS 206 GD+VI +D L VF +VGR+GG+EFAA L ++ EA R ++E Sbjct: 224 EGDRVIVEFADVLSDVFAQDAYVGRMGGDEFAAFVECPLSVAQAEAKA-----RTLVE-- 276 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + S + + S G+A + + + AD+ALY +K++G+ R Sbjct: 277 RWTACSDGRVRLGCSVGLASVARDQTFFDLYHAADKALYASKRNGKGR 324 >gi|222112638|ref|YP_002554902.1| diguanylate cyclase [Acidovorax ebreus TPSY] gi|221732082|gb|ACM34902.1| diguanylate cyclase [Acidovorax ebreus TPSY] Length = 342 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 7/173 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 +EL + +I +L+ D L+GL N + + + L + D+D+FK +N Sbjct: 167 RELAAAVEQIRELAIRDELTGLPNRRCMLEMMRLEHARAQRSRQPLLLAQLDLDHFKAVN 226 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD + + + + R GGEEF + + L +R + Sbjct: 227 DTHGHAAGDVALQSFAQTVHGCVRASDLLARWGGEEFLLLMANTHPADGTRLLERVRATV 286 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + + G + +T+S G+AE E + ++ RAD ALY AK+ GRNRV+ Sbjct: 287 AATPVALPGGTQLSLTVSVGLAELAPGESTAALLQRADAALYGAKRLGRNRVL 339 >gi|170289593|ref|YP_001739831.1| diguanylate cyclase [Thermotoga sp. RQ2] gi|170177096|gb|ACB10148.1| diguanylate cyclase [Thermotoga sp. RQ2] Length = 443 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 12/176 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 ++L EL+ ++ +++ D L+GL N + F + N LS + D+D FK Sbjct: 246 ALLFELYEEKEKLKEIAHRDSLTGLFNRAFFNEWIQDQVRKAQFQNVPLSFIMIDVDNFK 305 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 QIND +GH GDKV+ F++ + + F R GG+EF +S+Q+A +A+ +R Sbjct: 306 QINDTYGHLTGDKVLRFVARCISDSIRSSDFAVRYGGDEFLVVLYNTSKQQAEQVASRIR 365 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I N S + + IS G+AE + + +AD+ +Y K+ ++ VV Sbjct: 366 EKIRN-----SDELGVDVDISYGVAELKPGDNYLKFLQKADEEMYGMKRERKSPVV 416 >gi|145298067|ref|YP_001140908.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850839|gb|ABO89160.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 511 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 31/164 (18%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI---AFLSD 160 D L+GL N +++L N + + DID FK+IND +GHP+GD V+ A L + Sbjct: 361 DALTGLYNRRHLEETLATLHKDNHQYILAIIDIDNFKRINDTYGHPIGDAVLKRTAQLGN 420 Query: 161 QLVVVFGTPMFVGRLGGEEFAA----AALGSSEQ-----EAAILANDLRKIIENSQINIS 211 QL+ T + R GGEEF A + S++Q A++ D R+ Sbjct: 421 QLLEEHAT---LCRFGGEEFVAIFEQTDIASAQQLMELWRASMGQQDWRE---------- 467 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + ++ S GIAE P S ++ RAD ALY AK++G+NR+ Sbjct: 468 --PGLSVSFSGGIAESLDTPPDS-VMARADAALYQAKQTGKNRL 508 >gi|119896627|ref|YP_931840.1| PAS/PAC/GGDEF-domain-containing protein [Azoarcus sp. BH72] gi|119669040|emb|CAL92953.1| PAS/PAC/GGDEF-domain containing protein [Azoarcus sp. BH72] Length = 420 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 87/179 (48%), Gaps = 16/179 (8%) Query: 88 SILKELFISYNRISQLSRI---DCLSGLLNHSAFISSL-----GSYNE--KLSIVFFDID 137 S+ K+L R L I D L+GL N A +L ++ E LS++ DID Sbjct: 240 SVSKDLTERIERERALQEIASRDPLTGLYNRRAGEQALELQVQAAHAEGTALSLIIGDID 299 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK IND GHP GD+V+A + + L + R GGEEF A LA Sbjct: 300 HFKSINDRHGHPAGDRVLAGVGEALRGAVRSRDLAVRWGGEEFVVLVPECGAARALELAE 359 Query: 198 DLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 LR + Q P++ +T+S G+A E + ++ RAD+ALY AK GR+RV Sbjct: 360 RLRSSVAGLQF-----PAVGRVTMSLGLATLVAGETAAGLVMRADRALYRAKHGGRDRV 413 >gi|77920093|ref|YP_357908.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380] gi|77546176|gb|ABA89738.1| FOG: GGDEF domain containing protein [Pelobacter carbinolicus DSM 2380] Length = 367 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 15/170 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S L+R+D L+ + N AF +L LS+V DID FK+ ND++GH GD Sbjct: 188 LSHLARVDALTQIPNRRAFDEALQAEWGRLAREEGPLSLVLCDIDCFKKYNDHYGHQAGD 247 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQIN 209 KV+ +++ L P R GGEEFA + + A +A R+ +E+ Q Sbjct: 248 KVLRRVAEALADCARRPADLASRYGGEEFALLLPQTPLEGALSVAEKARQAVEDLALQHP 307 Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SS I +T+S G+A H P +T+I AD+ALY AK + RNRVV Sbjct: 308 TSSVKPI-LTLSLGVASVIPSLHIAP-TTLIESADKALYQAKNADRNRVV 355 >gi|78358088|ref|YP_389537.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220493|gb|ABB39842.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 398 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 25/181 (13%) Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S ++R D L+GL N F+ + + S LS++ DID+FK++ND +GH GD Sbjct: 201 LSHMARTDPLTGLNNRRFFMEAARAEVERMQSSGRPLSLLMLDIDHFKRVNDTWGHDAGD 260 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN------- 205 V+ LS L RLGGEEFA + EA A LR+ + Sbjct: 261 MVLKQLSCCLAETMRGQDVCARLGGEEFAVLLPETGHAEACRAAETLRQAVAGMAFAGHG 320 Query: 206 ----SQINI----SSGPSI--HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254 S + + S+G ++ + G+A C + + ++ RAD ALY AKK+GRNR Sbjct: 321 FSVTSSLGLTTLDSAGHAVSGQRPVPGGVAVSACCGQVVEILLKRADIALYAAKKNGRNR 380 Query: 255 V 255 Sbjct: 381 T 381 >gi|16330352|ref|NP_441080.1| hypothetical protein sll1687 [Synechocystis sp. PCC 6803] gi|1652841|dbj|BAA17760.1| sll1687 [Synechocystis sp. PCC 6803] Length = 970 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 12/173 (6%) Query: 99 RISQLSRIDCLSGLLN----HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ S D L+GL N F+ +G YN + ++ DID+FKQ ND GH G Sbjct: 796 RLENQSIRDPLTGLFNRRYLEQFFLQEIGRAKRYNHSIGVIMGDIDHFKQFNDQLGHDAG 855 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ + L R GGEE +S ++ + A LR+ I + ++ Sbjct: 856 DHVLKTIGRILQSNIRGSDIACRYGGEEMTIVLPQTSLEDTLVKAESLRQAIASMEVEYK 915 Query: 212 SGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +T+S G+A C H E + II AD+ALY AK +GRNRVV ++ Sbjct: 916 GKELGTLTVSLGVA--CYPNHGETMVNIIQAADRALYQAKAAGRNRVVMADEV 966 >gi|332161457|ref|YP_004298034.1| putative inner membrane protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605434|emb|CBY26932.1| GGDEF family protein [Yersinia enterocolitica subsp. palearctica Y11] gi|325665687|gb|ADZ42331.1| putative inner membrane protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863226|emb|CBX73352.1| hypothetical protein YEW_LN48910 [Yersinia enterocolitica W22703] Length = 372 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 3/164 (1%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGD 152 +Y + + ID L+ L N S+ L S N + ++ D+D+FK +ND +GH GD Sbjct: 186 AYFAMKDRANIDKLTQLNNRSSADYRLNSINHNRQACGLLILDLDHFKSVNDTYGHDAGD 245 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ + L+ FVGR GGEEF Q ++A +R+ +E+ + + Sbjct: 246 ILLTEVGKLLMTAVRDEDFVGRYGGEEFIIITHSHDPQAIKVVAERIRQRVESLDVQLPD 305 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + TIS G + + + D+ALY AK GRN+VV Sbjct: 306 GRKVKATISIGASLFLPGMSMLKALKMTDEALYQAKNQGRNQVV 349 >gi|300696967|ref|YP_003747628.1| signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum CFBP2957] gi|299073691|emb|CBJ53211.1| putative signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum CFBP2957] Length = 488 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 89/199 (44%), Gaps = 12/199 (6%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------G 123 LV++ ++L + Y+ L+ R ++L+ D L+GL N A L Sbjct: 290 LVVLFNVVTLAMAYLFAQHLERRIEEQRRHAELAATDALTGLANRRALDERLEAEWRRAA 349 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAA 182 + LS++ D+D+FK ND +GHP GD + ++ + P R GGEEF Sbjct: 350 RERQPLSVLMIDVDHFKAYNDQYGHPDGDVALQAVARCIQANLRRPGDLAARYGGEEFCV 409 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIY 238 GS A ++A +R I+ I + + +T+S G A +T+ Sbjct: 410 VLPGSDLGSANVVAETIRHAIQALDIPHARSDAAVLTVSIGAASGTPAAAGELRTATLTK 469 Query: 239 RADQALYVAKKSGRNRVVC 257 AD LY AK SGRNR V Sbjct: 470 AADAQLYRAKTSGRNRTVA 488 >gi|288935650|ref|YP_003439709.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22] gi|288890359|gb|ADC58677.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22] Length = 718 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 13/226 (5%) Query: 46 ANIFLFYIGLTP-FYGLEYILVENLSLVIIS-ITISLLLGYI--SGSILKELFISYNRIS 101 A L Y+ P G E + S+ +I+ + SL+L +I S + +L + Sbjct: 237 AGEVLGYLAWQPRLPGAEAAQASSGSMGLIAGVAASLILLFILFSSLGMYKLARGERQAR 296 Query: 102 QLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +++ ID LS L N A + L G ++ + +VF D+D FK +NDN+GH VGD +I Sbjct: 297 EIAMIDWLSRLPNRRALLLRLSQVCETGKHDNQ-CVVFIDLDGFKDVNDNYGHDVGDALI 355 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L T + R+GG+EFA A G + A + + + +S Sbjct: 356 RHIASALQTRVPTGAMLARMGGDEFAMAVSGEKAIDRAAAFAWAALELLKAPVTLSK-RK 414 Query: 216 IHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSD 260 I+I S GIA E ST ++ RAD A+Y AKKSG+ R + D Sbjct: 415 IYIGASIGIASGAPAECSSTELFRRADIAMYHAKKSGKGRTAWYDD 460 >gi|113866435|ref|YP_724924.1| hypothetical protein H16_A0406 [Ralstonia eutropha H16] gi|113525211|emb|CAJ91556.1| Hypothetical protein with GGDEF domain [Ralstonia eutropha H16] Length = 390 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 3/129 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + LS++ D+D+FK INDN+GH GD V+A + + RLGGEEF Sbjct: 250 GKPLSVLLCDLDFFKFINDNYGHSAGDAVLAQIGRIIAAGIRRRDIAARLGGEEFVVLLP 309 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQAL 244 + A LA LR+ +E++++++ P +H +T S G+A E + ++ RAD L Sbjct: 310 DTPPDAALHLAERLRQTLESTEMDVL--PGMHTVTASFGVATLRPGEDLEALLMRADNVL 367 Query: 245 YVAKKSGRN 253 Y AK GRN Sbjct: 368 YAAKNKGRN 376 >gi|104781787|ref|YP_608285.1| diguanylate cyclase [Pseudomonas entomophila L48] gi|95110774|emb|CAK15487.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas entomophila L48] Length = 519 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 10/173 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++L S ++ +L+ ID L+GL N F +L L+++ DID+FK+ N Sbjct: 322 QQLLDSNQQLERLANIDALTGLANRRCFDETLVLEARRAQRNGTPLALLMIDIDHFKRYN 381 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGHP GD + ++ L P + R GGEE A + AA++A + + Sbjct: 382 DTFGHPAGDACLQRVAKVLATCIRRPSDLLARYGGEEMAVILPDTDSGGAAVVAQLMLER 441 Query: 203 IENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRN 253 + + I+ P +T+S G+ A + +++ ADQALY AK +GR+ Sbjct: 442 LAHETIDHPGSPFGRVTVSVGVSSAPGAQLDGWQSLLAAADQALYRAKDAGRD 494 >gi|15805298|ref|NP_293990.1| hypothetical protein DR_0267 [Deinococcus radiodurans R1] gi|6457939|gb|AAF09850.1|AE001888_3 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 511 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 109/220 (49%), Gaps = 12/220 (5%) Query: 43 IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ 102 + ++ L G++P + + I + ++L ++ + +G+ S + ++L + Sbjct: 289 MIVSGFLLLRSGVSPQFPHKQIEIWTVALFVVVMLRQAFVGWESARLNQQLARQAQELHH 348 Query: 103 LSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 L+ D L+GL N +AF L + L++++ D++ FK +ND GH GD+ +A Sbjct: 349 LAFHDALTGLHNRAAFEDELQRQLHVPRPQPLALLYLDLNNFKPVNDTLGHAAGDQALAQ 408 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENS-QINISSGPS 215 ++ +L FV RLGG+EFA +++AA A + +R +E Q+ Sbjct: 409 VAQRLQAALPAGTFVARLGGDEFAVLLTSIPDEDAAWAAEEQIRAALERPMQLGEH---V 465 Query: 216 IHITISAGIAERCHKEP-ISTIIYR-ADQALYVAKKSGRN 253 +H++ + G+ E + I++R ADQA+Y K S + Sbjct: 466 VHLSAAVGVTLAPAGEAVVPEILWREADQAMYRVKHSASD 505 >gi|33597703|ref|NP_885346.1| hypothetical protein BPP3175 [Bordetella parapertussis 12822] gi|33574131|emb|CAE38460.1| putative conserved membrane protein [Bordetella parapertussis] Length = 540 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQIND 144 ++ +++ + ++ Q S D L+GLLN ++ + + ++++ DID FK IND Sbjct: 345 AVRRKIGTKFEQLRQDSLTDPLTGLLNRRGLEEYLRNTPWQDGAMTVLALDIDRFKIIND 404 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+VI L+ L T + RLGGEEFA +A LA +R+ IE Sbjct: 405 THGHAAGDEVIQSLAGILRSSARTKDVLARLGGEEFAVLLPDVDVPQAPQLAERIRRSIE 464 Query: 205 NSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255 + + T+S G+A C H + ++ AD+ALY AK GRNR Sbjct: 465 AAPTEA----GVSYTVSIGVA--CYPAHGASLEAVMRCADEALYAAKAGGRNRT 512 >gi|86147497|ref|ZP_01065808.1| GGDEF family protein [Vibrio sp. MED222] gi|85834665|gb|EAQ52812.1| GGDEF family protein [Vibrio sp. MED222] Length = 422 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 18/166 (10%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDK 153 S+ + D L+G+LN A L ++ KLS+++ DIDYFK +ND +GH +GD Sbjct: 262 SEKAHRDELTGILNRHAIRDWLKMQSQQVKQGHGKLSMIYLDIDYFKSVNDKYGHLMGDH 321 Query: 154 VIAFLSDQLVV---VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 ++ S +VV + T V R GGEEF + EA A +R ++ SQ Sbjct: 322 ILREFS--MVVGSSISATDKLV-RWGGEEFIVFCPETEAGEAQRKAEKIRLLV--SQHLW 376 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G S +T S GIAE +E ++ I RAD+ALY AK SGRN+V+ Sbjct: 377 IHGDS--LTCSIGIAE-MKQERVTETIARADEALYQAKHSGRNQVI 419 >gi|30249141|ref|NP_841211.1| hypothetical protein NE1154 [Nitrosomonas europaea ATCC 19718] gi|30180460|emb|CAD85065.1| Domain of unknown function, DUF9:HAMP domain [Nitrosomonas europaea ATCC 19718] Length = 555 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 9/164 (5%) Query: 102 QLSRIDCLSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+ L N + I L + + ++ D+D+FK IND GH GDK+ Sbjct: 385 KLSITDGLTSLYNRAKLNTILIEQLARFKRNDRTFCLLMIDVDHFKTINDKLGHITGDKI 444 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L+ T + R GG+EF A ++ A A +R + + + P Sbjct: 445 LITVASALLKSIRTIDYAARYGGDEFMAILTETNSSAAIKTAERIRSEVSAACSALEEHP 504 Query: 215 SIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVC 257 I IT+S GI + H + +I RAD ALY AKK GRNRV C Sbjct: 505 -IQITLSIGITQSHHDDTTPGDLIARADVALYEAKKRGRNRVYC 547 >gi|325276663|ref|ZP_08142393.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas sp. TJI-51] gi|324098207|gb|EGB96323.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas sp. TJI-51] Length = 451 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + LS DID+FK+IND GHP+GD+VI L+ Sbjct: 292 DSLTGLYNHTHILQLLEDCSFRARREQQPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 351 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L F+GR GGEEFA ++ + A + +++R+ + I + + T Sbjct: 352 LFLKQRLRKTDFIGRYGGEEFAIVMPNTALEAAHKVLDEIRRRFADI-IYPAQPQDLQCT 410 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SAG+ + T+ AD+ALY AK +GRN VV Sbjct: 411 FSAGVVQMDEGLDALTMASAADEALYRAKHAGRNCVV 447 >gi|317053094|ref|YP_004119448.1| diguanylate cyclase [Pantoea sp. At-9b] gi|316953421|gb|ADU72892.1| diguanylate cyclase [Pantoea sp. At-9b] Length = 459 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 11/177 (6%) Query: 87 GSILKELFISYNRISQLSR-IDCLSGLLNHS------AFISSLGSYNE-KLSIVFFDIDY 138 G+ ++ LF N +S + D L+ LLN SL N LS+ D+D+ Sbjct: 283 GTYMEMLF---NDVSHMQDGKDALTNLLNKRYLPIVLKHEVSLAMENHLPLSVAIIDVDF 339 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK++ND +GH VGD+ + +++ L +V R GGEEF + + EA L Sbjct: 340 FKKVNDEWGHSVGDRALTHIANLLSDNIRASDYVFRYGGEEFMIVLVEAGRSEAYTLLER 399 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R+I+ ++ SG + +T+S G + ++ RAD ALY AK++GRNR+ Sbjct: 400 IRRIVSSTPFEAVSGKILPLTVSIGYTVHDGHPDYNQLLNRADVALYQAKRNGRNRI 456 >gi|330446058|ref|ZP_08309710.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490249|dbj|GAA04207.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 276 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 7/159 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 S +D L+GL N SAF SL Y K F DID+FK+IND +GH +GD+ I + L Sbjct: 116 SSLDVLTGLPNRSAF-KSLKPYRSKQVFCFLDIDHFKRINDTYGHDIGDRAIRAFAHCLS 174 Query: 164 VVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 R GGEEF S E + ++ LR+ I+ I+I P T+S Sbjct: 175 QNIRKSDIAFRWGGEEFLLILREGISEEIDPFLILESLRRRIQ--AIDIIDIPK--FTVS 230 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + + +I +AD ALY +K++GRN+V + D Sbjct: 231 IGYCDYDDNVDVKDLINKADLALYESKRTGRNKVTRYKD 269 >gi|309701798|emb|CBJ01110.1| putative signal transduction protein [Escherichia coli ETEC H10407] Length = 261 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S + L ++ DID FK +ND +GH GD V+ L Sbjct: 94 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLTGDVVLRTL 153 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF +++++A + ++++N I S G I+I Sbjct: 154 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEDACRAGVRICQLVDNHAITHSEG-HINI 212 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +EP+ +I RAD+A+Y K++GRNR + F D +N Sbjct: 213 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 256 >gi|308050711|ref|YP_003914277.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] gi|307632901|gb|ADN77203.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] Length = 514 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 18/182 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 S+++ L ++SQL+R D L+GL N A L + L+++ DID+FK Sbjct: 319 SLMRMLAQQREQLSQLARTDALTGLANRRAMEEFLDEEWRRLCRHQRGLALMMVDIDHFK 378 Query: 141 QINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 Q ND+FGH GD+V+A ++ L V R GGEEF A E LA + Sbjct: 379 QFNDHFGHGTGDEVLAKVARVLESVTRRGGELASRWGGEEFVLAITEPKRDELERLAEVV 438 Query: 200 RKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPIS------TIIYRADQALYVAKKSG 251 + I Q+ IS SG S +T+S GIA ++P++ ++ +AD+ALY K +G Sbjct: 439 AQRI--GQLPISASGISQRLTVSIGIAFVPAGQDPVALGLNLNEMMEQADRALYRVKSAG 496 Query: 252 RN 253 R+ Sbjct: 497 RD 498 >gi|212637114|ref|YP_002313639.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212558598|gb|ACJ31052.1| GGDEF domain protein [Shewanella piezotolerans WP3] Length = 623 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 4/129 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S++ FDID FK IND++GH +GD I + ++ +GR+GGEEF +S Sbjct: 490 VSVIIFDIDNFKSINDHYGHHIGDLTIQATTKRIQRWLKEQDLLGRIGGEEFLIILPDTS 549 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYV 246 +EAA ++ +RK + + G + +TIS GIA H++ +S ++ ADQALY Sbjct: 550 GEEAAAISERIRKAVASQPFQF-DGIKLELTISLGIA-VLHEQATTLSELVIEADQALYK 607 Query: 247 AKKSGRNRV 255 AK SG+N+V Sbjct: 608 AKFSGKNKV 616 >gi|324113280|gb|EGC07255.1| GGDEF domain-containing protein [Escherichia fergusonii B253] Length = 311 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 104 SRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L + +K ++ DID FK +ND GH +GD V+ L Sbjct: 129 SNMDILTGLPGRRVLDESFDRQLLNAEPDKFYLLLLDIDRFKSVNDTLGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ L V R GGEEF S++ +A + + ++I +QI G +HI Sbjct: 189 AENLATWMRHNESVYRYGGEEFVIMIKASTDVDACMAGLRICELIAGNQIAYPQG-ELHI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T +AGI+ E + ++ R+D+A+Y K +GRNR + + E Sbjct: 248 TATAGISRAKPGETLDVVMGRSDRAMYQGKLTGRNRCMFMDENEQ 292 >gi|229111519|ref|ZP_04241070.1| Sensory box/GGDEF family protein [Bacillus cereus Rock1-15] gi|229129325|ref|ZP_04258296.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-Cer4] gi|229146619|ref|ZP_04274986.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST24] gi|228636789|gb|EEK93252.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST24] gi|228653930|gb|EEL09797.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-Cer4] gi|228671901|gb|EEL27194.1| Sensory box/GGDEF family protein [Bacillus cereus Rock1-15] Length = 415 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 246 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRNDEKIAIILFDIDNFKTVNDTYGHD 305 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 306 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 364 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 365 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410 >gi|121726265|ref|ZP_01679555.1| GGDEF family protein [Vibrio cholerae V52] gi|121631211|gb|EAX63584.1| GGDEF family protein [Vibrio cholerae V52] Length = 489 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 12/188 (6%) Query: 76 ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSI 131 + ++L+ +++G +L L ++R +QL+ D ++GLLN S L +++ L+I Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190 DID FKQIND +GH +GD+VI ++ +Q+ + V R GGEEF EQ Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248 I+ + S + + G TIS GI E + AD+ LYVAK Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTISGGIEVVESTTDRSFEDLFKAADEKLYVAK 480 Query: 249 KSGRNRVV 256 SG+N++V Sbjct: 481 TSGKNQLV 488 >gi|271499872|ref|YP_003332897.1| diguanylate cyclase [Dickeya dadantii Ech586] gi|270343427|gb|ACZ76192.1| diguanylate cyclase [Dickeya dadantii Ech586] Length = 519 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 43/228 (18%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR-----------------ID 107 L EN+S ++I++ + L + ++ +LK++ + +SR ID Sbjct: 297 LKENISAIVINLMVLLAMFFLGNFVLKQVRQTVKNKDAISRLHQEESDKNKILQKLALID 356 Query: 108 CLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+ L N F SL ++ LS++ D+D+FK+ ND +GH +GD+ + + Sbjct: 357 PLTKLANRRRFDLYLEQSLNRARDEGGPLSLIMLDVDFFKRYNDTYGHVLGDRCL----N 412 Query: 161 QLVVVFGT-PM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-----NI 210 QL V + P+ R GGEEFA G + ++AA+ K++EN + Sbjct: 413 QLGSVLNSLPLPDNALAARYGGEEFAIILPGMNGEQAAVYG---EKVVENIRCCALPHEA 469 Query: 211 SSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256 S P +T+S G+ + P I + ADQALY+AKK GRNR V Sbjct: 470 SLLPEQVVTVSVGVYSHSNDNPCDIQRLKEGADQALYLAKKKGRNRCV 517 >gi|229826369|ref|ZP_04452438.1| hypothetical protein GCWU000182_01741 [Abiotrophia defectiva ATCC 49176] gi|229789239|gb|EEP25353.1| hypothetical protein GCWU000182_01741 [Abiotrophia defectiva ATCC 49176] Length = 746 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 10/169 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 +++ LS +D L+ + N F + Y +K LS+ FDIDYFK ND++GH Sbjct: 563 HKLEALSYLDGLTQISNRRDFEKKILGYLQKSREQGISLSLFMFDIDYFKFYNDSYGHLE 622 Query: 151 GDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + ++ + F + R GGEEF AA LG +E+E+ +L N +R+ + I Sbjct: 623 GDNALKTVATIIQKHFSEAGGISARFGGEEFIAACLGLNEEESILLGNKIREDVFAQDIL 682 Query: 210 ISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256 P ++IS GI+ E + S ++ AD +LY AK+ G+NRVV Sbjct: 683 NEKAPLKKLSISIGISYYNGLEELKKSFVMRWADVSLYQAKQDGKNRVV 731 >gi|213619026|ref|ZP_03372852.1| hypothetical protein SentesTyp_22195 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 152 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 3/137 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 9 RQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLP 68 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQA 243 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + AD+ Sbjct: 69 GATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQSLADKR 128 Query: 244 LYVAKKSGRNRVVCFSD 260 LY AK+SGRNR +C SD Sbjct: 129 LYYAKQSGRNR-ICASD 144 >gi|69953820|gb|AAZ04316.1| sensory box histidine kinase [Thermotoga sp. RQ2] Length = 449 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 12/176 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 ++L EL+ ++ +++ D L+GL N + F + N LS + D+D FK Sbjct: 252 ALLFELYEEKEKLKEIAHRDSLTGLFNRAFFNEWIQDQVRKAQFQNVPLSFIMIDVDNFK 311 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 QIND +GH GDKV+ F++ + + F R GG+EF +S+Q+A +A+ +R Sbjct: 312 QINDTYGHLTGDKVLRFVARCISDSIRSSDFAVRYGGDEFLVVLYNTSKQQAEQVASRIR 371 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I N S + + IS G+AE + + +AD+ +Y K+ ++ VV Sbjct: 372 EKIRN-----SDELGVDVDISYGVAELKPGDNYLKFLQKADEEMYGMKRERKSPVV 422 >gi|302670397|ref|YP_003830357.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302394870|gb|ADL33775.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 589 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 13/173 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + + + Q + D L+GL N + I++ + + + DID FK +ND Sbjct: 418 ELRQANDELRQAADTDALTGLSNRRVIDKVVRSTIATFKTMGIDIVLGIADIDDFKVVND 477 Query: 145 NFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 +GH GDK++ +SD L + +GR GGEEF S +EA L +++R+ Sbjct: 478 TYGHAEGDKILVAISDMLNEQICRIPSSLIGRWGGEEFLFMCPRVSIEEARDLLDEIRQK 537 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I +++ G H TIS G+ E + + + RADQALY AK SG+NR+ Sbjct: 538 IADTEF----GAIGHRTISVGMTEFKNDDSADDVFCRADQALYEAKGSGKNRI 586 >gi|206579319|ref|YP_002238717.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Klebsiella pneumoniae 342] gi|206568377|gb|ACI10153.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Klebsiella pneumoniae 342] Length = 718 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 11/225 (4%) Query: 46 ANIFLFYIGLTP-FYGLEYILVENLSLVIIS-ITISLLLGYI--SGSILKELFISYNRIS 101 A L Y+ P G E + S+ +I+ + SL+L +I S + +L + Sbjct: 237 AGEVLGYLAWQPRLPGAEAAQASSGSMGLIAGVAASLILLFILFSSLGMYKLARGERQAR 296 Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +++ ID LS L N A + L E +VF D+D FK +NDN+GH VGD +I Sbjct: 297 EIAMIDWLSRLPNRRALLLRLSQVCETGKHDIQCVVFIDLDGFKDVNDNYGHDVGDALIR 356 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L T + R+GG+EFA A G+ + A + + + +S I Sbjct: 357 HIASALQTRVPTGAMLARMGGDEFAMAVSGAKAIDRAAAFAWAALELLKAPVTLSK-RKI 415 Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSD 260 +I S GIA E ST ++ RAD A+Y AKKSG+ R + D Sbjct: 416 YIGASIGIASGAPAECSSTELFRRADIAMYHAKKSGKGRTAWYDD 460 >gi|218530666|ref|YP_002421482.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] gi|218522969|gb|ACK83554.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] Length = 508 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 12/187 (6%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSI 131 ++LL + G L+ +++L++ D L+GL N + F + G+ L++ Sbjct: 320 TVLLSLLFGRELRRSAAMQAELARLAQTDVLTGLPNRRHFETVFAQAWGTSRRTGAPLAL 379 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQ 190 + D D+FK+ ND +GH VGD V+ L+D L P V R+GGEEF A L ++++ Sbjct: 380 ILIDADHFKRYNDRYGHAVGDAVLRGLADSLSASVRRPGDLVARVGGEEF-AVLLPATDR 438 Query: 191 EAAILANDL--RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 + A+ ++ R I + ++ GP +T+S G+A + RAD ALY AK Sbjct: 439 DGAMRVSETIHRAITGFAMPSVGIGPGT-VTVSLGLAVDSGGGTAEDLYRRADAALYEAK 497 Query: 249 KSGRNRV 255 GRN+ Sbjct: 498 AGGRNQT 504 >gi|91774784|ref|YP_544540.1| diguanylate cyclase [Methylobacillus flagellatus KT] gi|91708771|gb|ABE48699.1| diguanylate cyclase [Methylobacillus flagellatus KT] Length = 469 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 118/244 (48%), Gaps = 17/244 (6%) Query: 32 SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91 +IF SI A + + ++ I TPF + + LSL + +++L+ +S + Sbjct: 216 TIFLSI--AALSHLCHVSHLLIDNTPFSA-NWYMAHLLSLFSFTTLLAVLILQLS-QFTR 271 Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L S+ + + + D L+G+ N F + +S++ DID+FK ND Sbjct: 272 DLADSHAYLMEKAHKDSLTGIYNRGYFDETAELEWRRAQRNGTPISLLMLDIDHFKGYND 331 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 FGH GDK + ++ L P FV R GGEEF ++ + +A L + Sbjct: 332 QFGHVKGDKCLKKIAQALHANMQRPGDFVARFGGEEFVVLLPATTAEGCHAMAQKLHLAV 391 Query: 204 ENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ IS+G +++S G A I+ ++ +AD ALY AK+ GRNR+V + D Sbjct: 392 Q--KLKISAGDHRRVSVSIGHATWNGPYENGSINELLSQADLALYTAKRLGRNRIVRYED 449 Query: 261 IENN 264 + ++ Sbjct: 450 LAHS 453 >gi|78223628|ref|YP_385375.1| diguanylate cyclase [Geobacter metallireducens GS-15] gi|78194883|gb|ABB32650.1| diguanylate cyclase (GGDEF domain) [Geobacter metallireducens GS-15] Length = 353 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 11/176 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +R+ LS D L+GL N F + + + S++ D+D FK++ND +GH GD Sbjct: 181 DRLKNLSMRDHLTGLYNRRVFEAMLEVEARKRTTKPFSLLLIDLDDFKRVNDTYGHGAGD 240 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ L + F V R GGEEF +S+ A ++A R+ + + ++ Sbjct: 241 QVLVAVAKMLRLSFRKSDVVSRYGGEEFGVLLPDTSQDSARVVAERFRQNVATLSLPVNK 300 Query: 213 GPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 I T+S GIA R E ++ +I AD+ALY AK +G+NR VC S + N+ Sbjct: 301 -EKIMPTVSVGIASVTLRLGIE-VADVIEEADRALYQAKVTGKNR-VCSSLLGENS 353 >gi|325294684|ref|YP_004281198.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065132|gb|ADY73139.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 547 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 7/158 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 ++ L R + + L+ S Y+ S++ DID FK+IND +GH +GDKV+ ++ Sbjct: 394 LTDLYRRELVKELIEKEFHRSKRYGYH--FSVLMIDIDDFKKINDTYGHLLGDKVLKKVA 451 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + R GGEEF ++ + A +A+ +RK +E ++I+ I + Sbjct: 452 EIIKNELRKSDIPIRYGGEEFLIILPHTNLEAARKIADRIRKAVEKTEID-----GIKTS 506 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A+ + II +ADQALY AK+ G+N+VV Sbjct: 507 VSIGVADNSLSRKLEDIIKKADQALYTAKRMGKNKVVV 544 >gi|307320013|ref|ZP_07599435.1| diguanylate cyclase [Sinorhizobium meliloti AK83] gi|306894390|gb|EFN25154.1| diguanylate cyclase [Sinorhizobium meliloti AK83] Length = 414 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 12/180 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL + R+ +L++ D L+G+ N + +L +++ DID FK +ND Sbjct: 229 ELADANARLERLAKTDPLTGIANRRWMMETLNRLWSTGAERRPGTAMLMCDIDDFKSLND 288 Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH GD+ + ++ + V V R GGEEF G++E+ A A +R + Sbjct: 289 RLGHAEGDRCLVKVAGIIQSSVRRNRDHVARYGGEEFLVVLPGANEEAAVATAERIRASV 348 Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVVCFS 259 E + + N +S + ++T+S G+A + E I + +AD ALY+AK++GRNRVV + Sbjct: 349 EAASLPNPASRVAPYVTLSIGVAAQAPGEEIVAPEKLQNQADAALYLAKQAGRNRVVLYQ 408 >gi|261340900|ref|ZP_05968758.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC 35316] gi|288316954|gb|EFC55892.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC 35316] Length = 513 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 17/203 (8%) Query: 72 VIISITISLLLGYISGSILKELFISY----NRISQLSRI-----DCLSGLLNHSAF---I 119 V+++I ++ G +S + E +S+ N+ +L+ + D L+G N AF + Sbjct: 315 VLMNIINAIKTGDVSQAPRLESMLSHTIQSNKERELAYVRQATHDALTGCKNRRAFDNDM 374 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ-LVVVFGTPMFVGRLGGE 178 + L + ++ ++ DID FK IND +GH GD V+ ++ + L V+ + V R GGE Sbjct: 375 AELMNNHQPFALALVDIDNFKSINDTWGHLSGDIVLRNVAREGLQVMQPHSVSVYRYGGE 434 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EFA + + L R +E + + +H+T SAG+ E EP+ + Sbjct: 435 EFAVIFQAERSEASRQLLEAWRSAVEQREWREDN---LHVTFSAGLGE-WQFEPLEQFVG 490 Query: 239 RADQALYVAKKSGRNRVVCFSDI 261 R D ALY AK+ G+NR++ S+I Sbjct: 491 RVDAALYQAKQQGKNRILLTSEI 513 >gi|255594865|ref|XP_002536183.1| conserved hypothetical protein [Ricinus communis] gi|223520571|gb|EEF26198.1| conserved hypothetical protein [Ricinus communis] Length = 394 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 12/170 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS+ D L+GLLN A +++ + + +I+ FDID+FK IND +GH VGD Sbjct: 207 LRRLSQTDALTGLLNRRALEDAVEELLATPTARSRGFAIIMFDIDHFKSINDRYGHAVGD 266 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ + L R GGEEF +E A A LR+ + +Q +S Sbjct: 267 MVLQRTAQILGPCLRAADLFARYGGEEFIVVMGDVTEASARSTAERLRETL--AQAVVSD 324 Query: 213 GPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +T S G+ +C E ++ AD LY AK++GRN +VC S+ Sbjct: 325 EHGLKVTASFGVDWQAQCMFENWEKLVVVADNRLYQAKRNGRN-LVCSSE 373 >gi|15641117|ref|NP_230749.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147673586|ref|YP_001216572.1| GGDEF family protein [Vibrio cholerae O395] gi|153816912|ref|ZP_01969579.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|227081277|ref|YP_002809828.1| GGDEF family protein [Vibrio cholerae M66-2] gi|229505300|ref|ZP_04394810.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229511030|ref|ZP_04400509.1| GGDEF family protein [Vibrio cholerae B33] gi|229518151|ref|ZP_04407595.1| GGDEF family protein [Vibrio cholerae RC9] gi|229608319|ref|YP_002878967.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254848234|ref|ZP_05237584.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255745517|ref|ZP_05419465.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262158408|ref|ZP_06029524.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|262170270|ref|ZP_06037957.1| GGDEF family protein [Vibrio cholerae RC27] gi|298498791|ref|ZP_07008598.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|9655574|gb|AAF94263.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126512499|gb|EAZ75093.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|146315469|gb|ABQ20008.1| GGDEF family protein [Vibrio cholerae O395] gi|227009165|gb|ACP05377.1| GGDEF family protein [Vibrio cholerae M66-2] gi|227012920|gb|ACP09130.1| GGDEF family protein [Vibrio cholerae O395] gi|229344866|gb|EEO09840.1| GGDEF family protein [Vibrio cholerae RC9] gi|229350995|gb|EEO15936.1| GGDEF family protein [Vibrio cholerae B33] gi|229357523|gb|EEO22440.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229370974|gb|ACQ61397.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254843939|gb|EET22353.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255736592|gb|EET91989.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262021285|gb|EEY39999.1| GGDEF family protein [Vibrio cholerae RC27] gi|262029849|gb|EEY48497.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|297543124|gb|EFH79174.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 489 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 12/188 (6%) Query: 76 ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSI 131 + ++L+ +++G +L L ++R +QL+ D ++GLLN S L +++ L+I Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190 DID FKQIND +GH +GD+VI ++ +Q+ + V R GGEEF EQ Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248 I+ + S + + G TIS GI E + AD+ LYVAK Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTISGGIEVVESTTDRSFEDLFKAADEKLYVAK 480 Query: 249 KSGRNRVV 256 SG+N++V Sbjct: 481 TSGKNQLV 488 >gi|238764807|ref|ZP_04625749.1| hypothetical protein ykris0001_29190 [Yersinia kristensenii ATCC 33638] gi|238697005|gb|EEP89780.1| hypothetical protein ykris0001_29190 [Yersinia kristensenii ATCC 33638] Length = 415 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 6/134 (4%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 Y + S++ D+D+FK IND GH GD+V+ FL+ L + V R GGEEF Sbjct: 286 YGQHFSLILLDVDHFKSINDQLGHHKGDEVLIFLARTLESIIRECDIVFRWGGEEFTILL 345 Query: 185 LGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 ++ A LA +R+ IE Q N+ +T+S G+A+ E ++ R D+A Sbjct: 346 PSTNLDGALQLAESIRETIEMICQPNLP-----QLTVSIGVAQHQVGEDTDSLFKRMDEA 400 Query: 244 LYVAKKSGRNRVVC 257 LY AK SGRNRV+ Sbjct: 401 LYRAKASGRNRVLA 414 >gi|51245978|ref|YP_065862.1| hypothetical protein DP2126 [Desulfotalea psychrophila LSv54] gi|50877015|emb|CAG36855.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 652 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 10/169 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFG 147 S ++ +L+ D L+GL N S S LS+V DIDYFK+IND G Sbjct: 482 SREKLQRLATTDSLTGLCNRSQLFEIAEAELERQRHSSEHNLSLVMLDIDYFKKINDAHG 541 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V+ +D R+GGEEF G+ + A +A R ++E + Sbjct: 542 HAAGDLVLKAFADIGRKYLRDVDVFARIGGEEFIILLPGTDIKVALKIAERFRALVEKNP 601 Query: 208 INISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ++ I T+S G+ A ++ +++ AD ALYVAK+ GRNRV Sbjct: 602 VMVNE-KEIAFTVSFGVTAWNGIEQTFEEVLHEADSALYVAKEKGRNRV 649 >gi|134297395|ref|YP_001121130.1| diguanylate cyclase [Burkholderia vietnamiensis G4] gi|134140552|gb|ABO56295.1| diguanylate cyclase [Burkholderia vietnamiensis G4] Length = 452 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 14/188 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIV 132 +L + + ++LF ++ + + S D L+G N H+ F+ + +E LS++ Sbjct: 265 VLAWEVTKLYQQLFEAHTTLVRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQSEPLSLL 323 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191 D+D+FK ND FGH GD + ++ L P V R GGEEFA + + Sbjct: 324 MVDVDHFKAYNDAFGHVKGDACLIAVAQALAGAVRRPADIVARYGGEEFAIVLPNTGARG 383 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAK 248 A I+A++ R+ + + + S P+ +++S G A E +ST +I AD ALY AK Sbjct: 384 ARIVADEAREAVLRLDLPMPSSPTGRVSVSIGCATVSADE-LSTPDALIEAADGALYRAK 442 Query: 249 KSGRNRVV 256 +GRN VV Sbjct: 443 DAGRNCVV 450 >gi|320184493|gb|EFW59297.1| hypothetical protein SGF_03332 [Shigella flexneri CDC 796-83] gi|332096938|gb|EGJ01927.1| cellulose synthesis regulatory protein domain protein [Shigella boydii 3594-74] Length = 312 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 10/193 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 119 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 178 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND F H GD+V++ + + GR+GGEEF G+S Sbjct: 179 SVIQVDLDHFKAINDRFSHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 238 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 239 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEEAGDYDFEQLQSLADRRLYLA 298 Query: 248 KKSGRNRVVCFSD 260 K++GRNR VC SD Sbjct: 299 KQAGRNR-VCASD 310 >gi|297585556|ref|YP_003701336.1| 7TM domain sensor diguanylate cyclase [Bacillus selenitireducens MLS10] gi|297144013|gb|ADI00771.1| 7TM domain sensor diguanylate cyclase [Bacillus selenitireducens MLS10] Length = 615 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 89/179 (49%), Gaps = 16/179 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + + LS +D L+GL N F + N KL +V DID +K N Sbjct: 434 EELNDTMKHLKTLSELDGLTGLPNRRMFDEDLITVVKETMDENGKLGLVMLDIDNYKNYN 493 Query: 144 DNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 D +GH GD K +A L Q V+ V R GGEEFA +SE E LA +R Sbjct: 494 DFYGHLQGDDCLKEVATLFKQ-VIKEEDSAEVYRYGGEEFAVLVKEASEAETYALAEQIR 552 Query: 201 KIIENSQI-NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 K +E + I + S +T+SAG+A R P ++ +AD ALY AK+SG+N V Sbjct: 553 KRVEEAAIPHEQSDVQNRLTVSAGVAVLQARDLHSP-EKLLEQADAALYQAKRSGKNTV 610 >gi|114046788|ref|YP_737338.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113888230|gb|ABI42281.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 578 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 12/200 (6%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYN 126 + IT +L L + S L+ L ++ ++ D L+G N S + +N Sbjct: 376 MPITDNLELQQMVSS-LETLKTYAAQVKAMAETDGLTGCYNRRYLDSQIKKELSYANDHN 434 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAAL 185 LS+V FDID FK+ ND +GH GD+ + + D + P + R GGEEF Sbjct: 435 MPLSVVMFDIDNFKEFNDKYGHVAGDQCLKQVVDAAKSILQRPTDILARYGGEEFTLLLP 494 Query: 186 GSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242 S ++A +A LR+ I+E + + SS S +TIS GIA + + +I AD+ Sbjct: 495 SSHCEDAYRIAERLRETIMELAIPHQSSSHSGVVTISLGIACWQPAQSLDANLVISDADE 554 Query: 243 ALYVAKKSGRNRVVCFSDIE 262 ALY AK++GRNR + E Sbjct: 555 ALYQAKQAGRNRTIALRHPE 574 >gi|326795320|ref|YP_004313140.1| response regulator receiver modulated diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326546084|gb|ADZ91304.1| response regulator receiver modulated diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 304 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 9/173 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 +L + ++ L+ D L+GL N F SL Y+ LSI DID+FK++ND Sbjct: 131 QLLQANRKLEALATTDFLTGLSNRRCFERSLDDEIAKAKRYDIPLSIAILDIDHFKRVND 190 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 ++GH GD V++ ++ +L + R+GGEEF A L S+ E AI+A + +I+ Sbjct: 191 SYGHDAGDLVLSSVAARLQAGARKGDVLARIGGEEF-AICLPSTTLEQAIVACERYRIVL 249 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S+ IT+SAGIA ++ AD+ LY AK+ GR+R+V Sbjct: 250 SSEPLSYGCDEFTITLSAGIASMDVDHASKHDLMKAADELLYRAKQEGRDRIV 302 >gi|320194332|gb|EFW68963.1| hypothetical protein EcoM_03251 [Escherichia coli WV_060327] Length = 558 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129 T+ LL Y+ ++ +++ + + + D L+ L N A + Sbjct: 365 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQMHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH VGD+V++ + + GR+GGEEF G++ Sbjct: 425 SVIQVDLDHFKAINDRFGHQVGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|308274522|emb|CBX31121.1| hypothetical protein N47_E46330 [uncultured Desulfobacterium sp.] Length = 341 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 73/127 (57%), Gaps = 4/127 (3%) Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID FK +ND +GH GD V++ +S+ + V +GR GGEEF A + GS Sbjct: 214 LMIDIDRFKSVNDTYGHQAGDYVLSNISEVITSVKRIEDEIGRYGGEEFYAISHGSI-HN 272 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKK 249 A LRK +E + + +G I+ITIS G+A E + +I AD+ LY+AK+ Sbjct: 273 GREFAERLRKKVEKTDF-VYNGRRINITISIGVASAGELEKVDARNLIELADKRLYMAKQ 331 Query: 250 SGRNRVV 256 SGRNR+V Sbjct: 332 SGRNRIV 338 >gi|304412077|ref|ZP_07393687.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica OS183] gi|307305972|ref|ZP_07585718.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica BA175] gi|304349627|gb|EFM14035.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica OS183] gi|306911465|gb|EFN41891.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica BA175] Length = 1215 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 10/182 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 + E +S RI L+ D L+ L N + S L + + +++++F D+D+FK I Sbjct: 776 ISERKVSEERIHFLAHHDSLTLLPNRLSLQSRLEVVFREALASDSQIAVMFIDMDHFKNI 835 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH VGD+++ ++ +L + G V RLGG+EF A ++ E A LA LR Sbjct: 836 NDTLGHHVGDQLLLEVARRLKNIVGDTDTVARLGGDEFVVALSNTNHDEVASLAEALRSG 895 Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + SQ I + ++H + S GI+ + + ++ AD A+Y AK +GRN F+ Sbjct: 896 L--SQTYIINNQALHSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAA 953 Query: 262 EN 263 N Sbjct: 954 MN 955 >gi|296273906|ref|YP_003656537.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296098080|gb|ADG94030.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] Length = 478 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 8/164 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF----ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVG 151 ++ L+ D L+ L N F SL + SI+FFD+D FK +NDN+GH VG Sbjct: 312 KLENLASYDSLTNLHNRRTFNDFFEKSLKQFKRDKIPKSIIFFDLDDFKLVNDNYGHLVG 371 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ L + + R GGEEF S ++ +A L+ EN I ++ Sbjct: 372 DDVLKRIAAILKLQIRDSDNIARWGGEEFLILLNNSDLEQTFDIAQKLKNCFEND-IELN 430 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT S G++ + I II RAD+ LY K SG+NRV Sbjct: 431 NLVKEGITASFGVSTFKEDDTIEKIISRADKTLYKVKNSGKNRV 474 >gi|209966687|ref|YP_002299602.1| diguanylate cyclase, putative [Rhodospirillum centenum SW] gi|209960153|gb|ACJ00790.1| diguanylate cyclase, putative [Rhodospirillum centenum SW] Length = 383 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 11/166 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ + +RID L+GL N + + LS++ D+D+FK++ND GH G Sbjct: 192 RLEEEARIDPLTGLANRRRLEEQADLEVERARRFGRPLSVLMLDLDHFKRVNDEHGHARG 251 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D +++ L+ R GG+EF A ++ +A LA LR ++E + Sbjct: 252 DALMSALATLCRRALRQTDLFARAGGDEFVALLPETALDDATTLAERLRTLVEAEP--LL 309 Query: 212 SGP-SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255 GP + T+S G+A H + ++ AD ALY AK +GRNRV Sbjct: 310 RGPVPVGATVSIGVATYVAHGRSWAAMLQAADDALYRAKAAGRNRV 355 >gi|288941124|ref|YP_003443364.1| diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288896496|gb|ADC62332.1| diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 437 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 84/166 (50%), Gaps = 13/166 (7%) Query: 106 IDCLSGLLNHSAFISSLGSYNE--KLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ L N AF L E KLS ++ D D+FK++ND +GHP GD V+ L Sbjct: 274 LDGLTRLYNRKAFDRQLERVFELCKLSGQSACLLMIDADHFKRVNDEYGHPAGDTVLKRL 333 Query: 159 SDQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ G P FV R GGEEFAA +S + A LA L I +I G Sbjct: 334 AN--CCTKGFPRKSDFVARYGGEEFAAILQDTSLKSALPLAQRLLDTIRIMRIE-HEGLE 390 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + IT+S GIAE + AD ALY AKK GR+R+V ++ Sbjct: 391 LDITVSIGIAELGTLASAEHWLKMADGALYAAKKGGRDRIVTAPEM 436 >gi|23015028|ref|ZP_00054818.1| COG3706: Response regulator containing a CheY-like receiver domain and a GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 562 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ +++ N KL +V D+D FK +ND +GHP GD+V+ L+ Sbjct: 400 DGLTGLFNHTFIAQYLETSLAAARRENGKLCVVMIDVDLFKSVNDTYGHPAGDQVLVALA 459 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L T +GR GGEEF S +E+ + N LR+ + +++ G Sbjct: 460 RLLQQRLRTNDLIGRYGGEEFVIIMQNVSLKESLTIVNGLRE--DFARLKFQCGDQFFSC 517 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T S GIA R + ++ AD+ALY AK++GRNR+ Sbjct: 518 TFSGGIA-RFPEIAGDRLMEAADKALYEAKQTGRNRI 553 >gi|311696781|gb|ADP99654.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [marine bacterium HP15] Length = 785 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 86/170 (50%), Gaps = 13/170 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+S + D L+ LLN AF +SL G + + ++ D+DYFK +ND GH + Sbjct: 612 ERLSWEATHDSLTQLLNRRAFNASLVRSLGEAGRQDARSVLMLIDLDYFKPVNDEGGHLL 671 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQI 208 GD ++ L+D V RLGG+EF A G + EA LA +R +E +I Sbjct: 672 GDDLLKRLADLFKDAVRQSDTVARLGGDEFGIILPACGMTRAEA--LAERIRADVEALRI 729 Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257 G S +T S G+ E ++ ++ RAD+ Y+AK GRNRVV Sbjct: 730 E-HDGRSFGVTTSIGLTELTAEDSGPREVMARADEGSYIAKSRGRNRVVV 778 >gi|291565903|dbj|BAI88175.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 298 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144 EL + + +L+ D L+G+ N + YN S++ DID+FK IND Sbjct: 134 ELKQALVELEKLATTDALTGIANRRHLLVLGEREFQRTHRYNNPFSVLMIDIDHFKLIND 193 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH +GDK + ++ V GR GGEEF + EA ++A +R+ I Sbjct: 194 NYGHNIGDKALKIMAAVTVNALRKVDIFGRFGGEEFVVFLPETKADEALVVAERIREAIA 253 Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249 + I + +IHIT+S G+ E + ++ AD+ALY AKK Sbjct: 254 TTPIYVDDQ-TIHITVSIGVTIYNSSEISLDGLLMEADKALYDAKK 298 >gi|212704840|ref|ZP_03312968.1| hypothetical protein DESPIG_02907 [Desulfovibrio piger ATCC 29098] gi|212671802|gb|EEB32285.1| hypothetical protein DESPIG_02907 [Desulfovibrio piger ATCC 29098] Length = 533 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 13/176 (7%) Query: 101 SQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD----K 153 S++S +D L+G+ N A ++ L + +S++ D+D FK ND GH GD + Sbjct: 354 SRMSLMDSLTGIPNRRALDMRLADLAELRQTVSLIMLDVDLFKIYNDTLGHQEGDACLHR 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V + D L G + R GGEEFA G + A +A LR+ +E I Sbjct: 414 VAQAMRDGL---RGGDREIFRYGGEEFAVVLDGVPPEHALHVAERLRQAVEQLGIPHPGS 470 Query: 214 PSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFSDI-ENNTC 266 P+ +TIS G+A P + ++ AD ALY AK+ GRNRV +I + + C Sbjct: 471 PAGRVTISLGVAAVGELTPEILPRLLETADSALYSAKEHGRNRVHLAGEIVKKSAC 526 >gi|182417212|ref|ZP_02948572.1| putative diguanylate cyclase/phosphodiesterase domain [Clostridium butyricum 5521] gi|237665980|ref|ZP_04525968.1| diverse intracellular signalling/diguanylate cyclase (GGDEF) domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378937|gb|EDT76446.1| putative diguanylate cyclase/phosphodiesterase domain [Clostridium butyricum 5521] gi|237658927|gb|EEP56479.1| diverse intracellular signaling/diguanylate cyclase (GGDEF) domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 570 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 12/165 (7%) Query: 100 ISQLSRI--DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 I +L ++ D L+ L N+ S I +NEK S++ DID FK IND +GH Sbjct: 401 IKKLEKLNTDGLTSLFNNKYIKILLSNMIDRYIYWNEKFSVIMIDIDNFKSINDTYGHLY 460 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+VI ++ L+ + + GR GG+EF +SE+EA + D+ K I+ ++N Sbjct: 461 GDRVILDVATILIYISDNKGYAGRFGGDEFILILPNTSEEEAINIGKDIMKKID--RLNT 518 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I++S G+ E + I + AD A+Y +K +G+N++ Sbjct: 519 LTESERPISLSIGVYENTC-DNIHDCMNNADSAMYKSKTNGKNQI 562 >gi|308069062|ref|YP_003870667.1| response regulator containing a CheY-like receiver domain and a GGDEF domain [Paenibacillus polymyxa E681] gi|305858341|gb|ADM70129.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Paenibacillus polymyxa E681] Length = 374 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 11/187 (5%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIV---FFDID 137 Y + +EL IS IS++S D L+ L NH F Y E+ +I+ DID Sbjct: 189 YKTKRAQQELMISNAIISKMSMTDGLTKLYNHLSFQNFYEKALEYAEQGAIIHLALVDID 248 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK+IND +GH GDK++ +S + R GGEEFA + +EA + Sbjct: 249 NFKKINDTYGHQFGDKILETISQIITEQITANDIAARYGGEEFAILMFEHTFEEAYQIVE 308 Query: 198 DLRKIIENSQINISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNR 254 ++R+ +E + +T+S G+ E +K+ +AD LY AK+SG+N+ Sbjct: 309 NIRREVEKMTFQ-EKLQLVSVTVSIGLKSYTEEMNKDK-DVFFQQADDYLYQAKRSGKNK 366 Query: 255 VVCFSDI 261 +V + I Sbjct: 367 IVALNHI 373 >gi|239993546|ref|ZP_04714070.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126] Length = 371 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 69/132 (52%), Gaps = 2/132 (1%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S+ DID FK IND GH GD+V+ +S + R GGEEF Sbjct: 229 KRKFSVAIADIDRFKSINDTLGHEQGDEVLRQISKVFSSRLRGQDILARWGGEEFMFIFT 288 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 + E A ++R I+ N+ +NI+ G IH+T S G++E IS + RADQALY Sbjct: 289 DTDEAGAVNALENIRDILNNAPLNIN-GSEIHVTSSFGVSEVNPDIDISCAVRRADQALY 347 Query: 246 VAKKSGRNRVVC 257 AK +GR+ VC Sbjct: 348 YAKDNGRD-CVC 358 >gi|269791775|ref|YP_003316679.1| response regulator receiver modulated diguanylate cyclase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099410|gb|ACZ18397.1| response regulator receiver modulated diguanylate cyclase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 917 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 65/183 (35%), Positives = 94/183 (51%), Gaps = 11/183 (6%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-----LGSYNE--KLSIV 132 L L +SG+ + E+ ++ ++R D L+GLLN A I S E LS+ Sbjct: 733 LTLRVLSGTRVMEV---QRKLRFMARHDQLTGLLNRRAVIEMEEREMARSVREGGSLSVA 789 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID FK IND +GH GD+V+ ++ ++ VGR GGEEF G+S +A Sbjct: 790 MMDIDRFKAINDTYGHLAGDQVLREVARRVGSKLRVYDVVGRYGGEEFLLILPGASLGDA 849 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 L +R I S+ + G I +T S G+AE + + + ADQALY+AK SGR Sbjct: 850 KRLCERMRSAI-GSEPVLYDGLQIPVTASFGVAEFVPQLTVDQLNNLADQALYLAKASGR 908 Query: 253 NRV 255 + V Sbjct: 909 DAV 911 >gi|227886072|ref|ZP_04003877.1| conserved hypothetical protein [Escherichia coli 83972] gi|227837001|gb|EEJ47467.1| conserved hypothetical protein [Escherichia coli 83972] gi|307553542|gb|ADN46317.1| C-terminal part of putative diguanylate cyclase [Escherichia coli ABU 83972] Length = 135 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID FK +ND +GH +GD V+ L+ L V R GGEEF ++++E Sbjct: 1 MLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKATNDEE 60 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A + ++++N I S G I+IT++AG++ +EP+ +I RAD+A+Y K++G Sbjct: 61 ACRAGVRICQLVDNHAITHSEG-HINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTG 119 Query: 252 RNRVVCFSDIEN 263 RNR + F D +N Sbjct: 120 RNRCM-FIDEQN 130 >gi|148555580|ref|YP_001263162.1| diguanylate cyclase [Sphingomonas wittichii RW1] gi|148500770|gb|ABQ69024.1| diguanylate cyclase [Sphingomonas wittichii RW1] Length = 390 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 12/173 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L+G+ N F I + + LS+V DID FK IND +GH VGD Sbjct: 220 MRTLATSDMLTGVYNRRGFEDAAERAIRNAHRQRQPLSVVVADIDGFKAINDRYGHGVGD 279 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + + ++ + +GR+GGEEFA + + Q+A + +R+ I + S Sbjct: 280 RALRHFASRIERLVRRGDLIGRIGGEEFALLLVNTRPQDAVEVVERIRRDIAAMPV---S 336 Query: 213 GPS-IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 GP + +T S G+ R +++++ RAD+ALY +K GR+RV ++E Sbjct: 337 GPDRVVMTASFGLTGLRPGDISLASLLARADRALYRSKLDGRDRVTSAEELEE 389 >gi|160876864|ref|YP_001556180.1| diguanylate cyclase [Shewanella baltica OS195] gi|160862386|gb|ABX50920.1| diguanylate cyclase [Shewanella baltica OS195] Length = 672 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 12/134 (8%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ FD D+FK+INDNFGH +GD+ + ++ + G +GR+GGEEF + Sbjct: 528 SVIIFDADHFKKINDNFGHELGDRALLTIASASQALTGNKDLIGRIGGEEFLILLPNTDA 587 Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKEP-ISTIIYR 239 + A LA+ L+ I S++ P+ + +T+SAG+A E +++ ++++ R Sbjct: 588 ERACELAHQLQAHI--SRLGAEDLPAELKLTVSAGVATLAPQKKTENTYQDKDFASLLKR 645 Query: 240 ADQALYVAKKSGRN 253 AD ALY AK +GRN Sbjct: 646 ADDALYEAKNAGRN 659 >gi|242240353|ref|YP_002988534.1| diguanylate cyclase [Dickeya dadantii Ech703] gi|242132410|gb|ACS86712.1| diguanylate cyclase [Dickeya dadantii Ech703] Length = 241 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 81/151 (53%), Gaps = 4/151 (2%) Query: 107 DCLSGLLNHSAFIS--SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ + N SA I L +E+ +++ DID+FK+IND +GHP GD VI L ++ Sbjct: 84 DPLTDVFNRSAIIDLIDLALEHEQAALIVLDIDHFKKINDTYGHPTGDAVICALIGRIRD 143 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 V +GR+GGEEF G S +A LA + + ++ ++ + P +T S GI Sbjct: 144 VLQGKGSIGRVGGEEFTILLDGYSLMQAVELAEHIHASLNHTPLD--ALPEYLVTASFGI 201 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + + AD ALY AK +GRNRV Sbjct: 202 SWAPPQAHFDELYSAADIALYQAKNAGRNRV 232 >gi|148555510|ref|YP_001263092.1| diguanylate cyclase [Sphingomonas wittichii RW1] gi|148500700|gb|ABQ68954.1| diguanylate cyclase [Sphingomonas wittichii RW1] Length = 343 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 15/178 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNEK------LSIVFFDIDYFK 140 ++ K+L ++ + + D L+GL N A L G++ L++ DID+FK Sbjct: 167 AMRKDLAAAHRKANS----DPLTGLPNRRALDQHLRGAFENARRAATPLALAICDIDHFK 222 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDL 199 Q ND GH +GD+VI F++ L +FV R GGEEF G++ + A L + + Sbjct: 223 QFNDTHGHQIGDEVIKFVASSLGRAASGDVFVARYGGEEFVMVFERGAAAKAMATL-DKI 281 Query: 200 RKIIENSQINIS-SGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R I ++ ++ +G S+ ++ S G+A ++ +I+ RAD ALY AK+ GRNR+ Sbjct: 282 RAAIAARELKVTHTGQSLGRLSFSGGLAALDLQDSPGSILKRADAALYRAKQDGRNRI 339 >gi|27365600|ref|NP_761128.1| GGDEF family protein [Vibrio vulnificus CMCP6] gi|27361748|gb|AAO10655.1| GGDEF family protein [Vibrio vulnificus CMCP6] Length = 439 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 14/183 (7%) Query: 78 ISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIV 132 I LLL G+ L +L + ++ ++S +D LSGL N+ F++ + E V Sbjct: 262 IPLLLAITVGACYYLYKLNKAQKKLKEISYLDPLSGL-NNRHFLAEVVKQQLPLEHYYAV 320 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK +ND +GH +GD+VI ++ + + R+GGEEF S EA Sbjct: 321 MLDIDHFKSVNDRYGHDIGDQVIRRVAKVVKSRIRVSDYAFRIGGEEFLLLVKTPSSNEA 380 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 + +R+ +E N++ P H+T+S G + + I AD LY AK++GR Sbjct: 381 RQVCERIRQDVE----NMTQAP--HVTVSIGFT--ALQTQLDETIRMADSHLYEAKRNGR 432 Query: 253 NRV 255 NRV Sbjct: 433 NRV 435 >gi|114561281|ref|YP_748794.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114332574|gb|ABI69956.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 426 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 8/173 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 ++++L+ D L+GL N + ++ L + S++ D+D+FK+IND +GH G Sbjct: 239 KVARLANKDQLTGLWNRHSLLNKLEEVDALWLRNGLAYSLMVLDLDHFKRINDTYGHLAG 298 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ +D L FV R GGEEF ++++EA I+A +++ I + + + Sbjct: 299 DMVLKNTADILQKSLRKIDFVCRYGGEEFLIILPLTNKKEAQIVAEKVQQKINENTV-LW 357 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 I+ T+S G A I ++ AD A+Y+AK GRN + +E++ Sbjct: 358 QKTHINTTLSIGYATCKTHLSIEQLLQLADDAMYLAKSKGRNTICSMDAMEDS 410 >gi|117923620|ref|YP_864237.1| diguanylate cyclase [Magnetococcus sp. MC-1] gi|117607376|gb|ABK42831.1| diguanylate cyclase [Magnetococcus sp. MC-1] Length = 464 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 12/178 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 L+++ + + S D L+ + N A SL Y E LS++ D+D+FK+I Sbjct: 274 LQQVQDDLKKAKEESLTDPLTQVANRRALFQSLTRETARTRRYGEPLSLIIIDLDHFKKI 333 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHPVGD+V+ ++ + + R GGEEF A ++ +A A +R Sbjct: 334 NDTYGHPVGDRVLKEVAGHARALLRDSDTLARYGGEEFVALLPETTLPQAMEKAEQIRLS 393 Query: 203 IENSQINISSGPSIHITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + + G S+ I+ S G+A+ ++RADQALY AK GRN V+ Sbjct: 394 VAAMRFKL-KGESLSISASLGVAQLDDGASQDANNEAFVHRADQALYRAKSGGRNCVI 450 >gi|330719540|gb|EGG98139.1| GGDEF domain protein [gamma proteobacterium IMCC2047] Length = 176 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 80/171 (46%), Gaps = 25/171 (14%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVV 165 D L+GLL A L N + IV D+D+FK+ ND GH VGD+V+ L+ QL Sbjct: 5 DELTGLLGRRALNERLLRLNGRYCIVMVDVDHFKKFNDTHGHEVGDQVLKMLAGQLEKTT 64 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQE--------------------AAILANDLRKIIEN 205 GT + R GGEEF G + + ND +K + Sbjct: 65 GGTKAY--RYGGEEFTLIFEGKTAAQIEPHLEALRGRVADYPMQIRGNNRPNDSKKGKKQ 122 Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 SGP + +TIS G A + K + +I AD+ALY AKKSGRNRV Sbjct: 123 RAKGKGSGP-LKVTISLGAAVKTDKLRTSAQVIEAADKALYSAKKSGRNRV 172 >gi|330824934|ref|YP_004388237.1| diguanylate cyclase [Alicycliphilus denitrificans K601] gi|329310306|gb|AEB84721.1| diguanylate cyclase [Alicycliphilus denitrificans K601] Length = 561 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 21/178 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 + L ++ R+ +LS D L+GL N F L ++ L+++ D+D+FKQ N Sbjct: 378 EALTLANQRLEELSTTDSLTGLANRRHFDDILAKEWQRARRLRHPLALLMIDVDHFKQFN 437 Query: 144 DNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LAND 198 D +GH GD +V L +L+ T R GGEEF A + S + E A+ +A Sbjct: 438 DTYGHLAGDDCLRQVAQILKQRLLRGSDT---AARFGGEEF--AVITSMDLEGALHIAEL 492 Query: 199 LRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253 +R+ +EN +++ ++H+++S G++ + P + +I AD+ALY AK++GRN Sbjct: 493 IRQDVENHPVSVDGVDAVHVSVSIGLSALVPDGSRSP-AQLISLADEALYRAKRAGRN 549 >gi|260597954|ref|YP_003210525.1| hypothetical protein CTU_21620 [Cronobacter turicensis z3032] gi|260217131|emb|CBA30932.1| Uncharacterized protein yneF [Cronobacter turicensis z3032] Length = 445 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 13/169 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVG 151 +IS+ + D L+G+ + S +L + L ++ D+D+FK INDN+GH G Sbjct: 261 QISRRANYDHLTGVYSRSGLFEALARDDNNPALAGRPLCVMLMDLDHFKSINDNYGHECG 320 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+A ++L + G V R+GGEEF + A LA LR+ + + + Sbjct: 321 DAVLATFGEKLRELTGDAGRVARMGGEEFVVVCPDMTLDRACQLAETLRQQVAGEPV-VC 379 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYR----ADQALYVAKKSGRNRV 255 G ++ ++S G+ E ++ +S R AD LY +K+ GRNR Sbjct: 380 EGQTLSFSVSIGLGYEAAPQDRVSDTFTRLMREADSLLYQSKREGRNRT 428 >gi|146308192|ref|YP_001188657.1| diguanylate cyclase [Pseudomonas mendocina ymp] gi|145576393|gb|ABP85925.1| diguanylate cyclase [Pseudomonas mendocina ymp] Length = 518 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 13/180 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 +EL + R+ L+ D L+GL N +F +L LS++ DID FK+ N Sbjct: 321 EELLDANARLEVLASQDALTGLANRRSFDQTLEVEIRRAQRRGSPLSLMLLDIDLFKRYN 380 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD + ++D L P R GGEE A + A +A + Sbjct: 381 DRYGHVAGDACLRAVADVLRQCMRRPGDLAARYGGEELAVILPNVDIEGAQTVARTFMQA 440 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRVVC 257 +E + P +T+SAG+A S+ +I ADQALY AK +GRNR+ C Sbjct: 441 LEQRHLAHQGSPFQRVTVSAGVASLVPDAGDSSAQALALIRAADQALYRAKSNGRNRLEC 500 >gi|330505401|ref|YP_004382270.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328919687|gb|AEB60518.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 383 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 71/134 (52%), Gaps = 1/134 (0%) Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 LG+ + LS++ DID+FKQ NDN GH GD+V+ L + +GR GGEEF Sbjct: 248 LGNLRQPLSLLLLDIDHFKQANDNLGHQGGDEVLKHFVRTLSANLRSNEPLGRYGGEEFI 307 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 + A I A LR+ + + S G IT S G A ++E + ++ RAD Sbjct: 308 ILLRDVDVESARITAERLRRCVAEAPYRHSQG-DYPITTSIGHATAHNQESLEQLLQRAD 366 Query: 242 QALYVAKKSGRNRV 255 ALY AK+ GRNRV Sbjct: 367 TALYRAKREGRNRV 380 >gi|15614797|ref|NP_243100.1| response regulatory protein (sensory transduction system) [Bacillus halodurans C-125] gi|10174853|dbj|BAB05953.1| response regulatory protein (sensory transduction system) [Bacillus halodurans C-125] Length = 314 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 8/169 (4%) Query: 98 NRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +LSR+D L+ L+N A I+ + ++ DID+FK IND +GH Sbjct: 146 QKVDRLSRVDFLTNLMNRRDMQEKIRAEINRSIRHGRSFTLAIVDIDFFKNINDTYGHDC 205 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ L + +V R GGEEF + +E +R+ I S + I Sbjct: 206 GDHVLKHFVSTLKNSVRSSDYVSRWGGEEFLLLFPETKLEEGKRACEKIRQKINESPV-I 264 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G SI IT + GI+E I +I AD ALY KK+G+N+VV S Sbjct: 265 YKGMSISITATFGISEYRPSVRIEELIKAADDALYKGKKTGKNQVVVQS 313 >gi|17230996|ref|NP_487544.1| hypothetical protein alr3504 [Nostoc sp. PCC 7120] gi|17132637|dbj|BAB75203.1| alr3504 [Nostoc sp. PCC 7120] Length = 307 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 12/173 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 +L +L + + +L+R D L+GL N F+ + S + E L++ +FD+D FKQ Sbjct: 117 LLSQLKTTLINLEKLARTDNLTGLTNRGFFLDIVNSEIEKSLRHREPLTLAYFDVDNFKQ 176 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH GD+++ ++ + RLGG+EFA +S + A ++ + L Sbjct: 177 INDQFGHSFGDRLLQIIAKSTTNTLRKIDVIARLGGDEFAILLPRTSYESAEVVLHRLHT 236 Query: 202 IIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ S ++ +T S G I + ++ II AD +Y+AKK G+N Sbjct: 237 VLLASM----KKENLSVTFSIGAITFNNPPKSVAEIIEIADNLMYLAKKKGKN 285 >gi|303245955|ref|ZP_07332237.1| serine/threonine protein kinase [Desulfovibrio fructosovorans JJ] gi|302492738|gb|EFL52606.1| serine/threonine protein kinase [Desulfovibrio fructosovorans JJ] Length = 1719 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 89/174 (51%), Gaps = 16/174 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 KEL + +LS D L+G+ N + I L+I+ D+D FK +N Sbjct: 1549 KELNRKNLALQRLSTTDQLTGVYNRRSIEDRLRHEIEHCRDNESSLAIILLDVDCFKDVN 1608 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL--ANDLRK 201 D FGH VGD V+ ++ + + F GR GGEEF SE + +L A LRK Sbjct: 1609 DTFGHNVGDTVLVDIAVTIGRNVRSTDFFGRWGGEEFMVVV---SEFVSNVLPFAERLRK 1665 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++E + + ++G +T S G+A E S + RADQALY AK++GRNRV Sbjct: 1666 VLEKKR-HPTAG---KVTASLGVALYLPGETPSQFVSRADQALYRAKENGRNRV 1715 >gi|322418716|ref|YP_004197939.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] gi|320125103|gb|ADW12663.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] Length = 312 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 102/186 (54%), Gaps = 28/186 (15%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--GSY------NEKLSIVFFDIDYF 139 S+ EL + ++ +L+ ID L+GL N ++S + G + E LS+V DID+F Sbjct: 126 SLQDELKKANEQLKRLTNIDHLTGLFNRR-YLSEILEGEFFRARRNRESLSLVIIDIDFF 184 Query: 140 KQINDNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 K +ND++GH GD V +A L+ Q + + + R GGEEF G+S + + A Sbjct: 185 KNVNDSYGHQNGDVVLASVAGLAQQQMRAYDS---AARYGGEEFVLVFPGTSLEGGVVAA 241 Query: 197 NDLRKIIENSQINIS-SGP--SIHITISAGIAERCHKEP----ISTIIYRADQALYVAKK 249 LR+ + ++ S P + +TISAG+A + P + ++ +AD+ALY AK+ Sbjct: 242 ERLRQAV----LDFSFPAPLEDLTLTISAGVA--SYPSPLVDNVDSLFRQADEALYRAKQ 295 Query: 250 SGRNRV 255 +GRNRV Sbjct: 296 NGRNRV 301 >gi|228954329|ref|ZP_04116355.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071549|ref|ZP_04204767.1| Sensory box/GGDEF family protein [Bacillus cereus F65185] gi|229081301|ref|ZP_04213804.1| Sensory box/GGDEF family protein [Bacillus cereus Rock4-2] gi|228701923|gb|EEL54406.1| Sensory box/GGDEF family protein [Bacillus cereus Rock4-2] gi|228711485|gb|EEL63442.1| Sensory box/GGDEF family protein [Bacillus cereus F65185] gi|228805261|gb|EEM51854.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 415 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 246 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 305 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 306 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 364 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 365 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410 >gi|239820804|ref|YP_002947989.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110] gi|239805657|gb|ACS22723.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110] Length = 1007 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 8/165 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 R+ L++ID L+GL N + F + LG ++ +++++ DID FKQIND FGH G Sbjct: 831 RLVGLAQIDPLTGLANRAGFEARLGEAMDRSRSAGALMALMYLDIDGFKQINDQFGHQTG 890 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ S +L + RLGG+EF G + A+ A + + + Sbjct: 891 DELLKAFSGRLSQGLRSSDVRARLGGDEFTVIMEGLPHADIAVAAATKLVLAMQTPFTVE 950 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +I++T S G+A + + ++ +AD+ LY AK++GRN V Sbjct: 951 PQRTINVTASIGLAFYQGGAATSAALVKQADEMLYRAKRAGRNNV 995 >gi|89093489|ref|ZP_01166437.1| GGDEF protein [Oceanospirillum sp. MED92] gi|89082179|gb|EAR61403.1| GGDEF protein [Oceanospirillum sp. MED92] Length = 385 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 12/185 (6%) Query: 81 LLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132 +LG I+G + + +L + Q +R D L+GL N + L ++ LS++ Sbjct: 199 VLGLIAGWAAVNQLNMLLGLYRQATR-DPLTGLANRRQAMEQLSGDMKLMREKSKPLSVL 257 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF--VGRLGGEEFAAAALGSSEQ 190 FD+D FK ND +GH GD V+ + +++ F V R GGEEF G + Sbjct: 258 LFDLDKFKSFNDTYGHAAGDIVLQRFA-KVMRKFARKRLDLVCRYGGEEFLMVLPGLDAE 316 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +A +A +R + Q+ +G I T S G+AE ++ I +++ +D ALY AK + Sbjct: 317 QAGEVAEKIRLACYDEQVKTPTGERIGFTTSIGVAELKAEDTIDSLLQHSDDALYEAKGT 376 Query: 251 GRNRV 255 GR++V Sbjct: 377 GRDKV 381 >gi|323186711|gb|EFZ72033.1| cellulose synthesis regulatory protein [Escherichia coli RN587/1] Length = 558 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129 T+ LL Y+ ++ +++ + + + D L+ L N A + Sbjct: 365 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQMHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH VGD+V++ + + GR+GGEEF G++ Sbjct: 425 SVIQVDLDHFKAINDRFGHQVGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|291617346|ref|YP_003520088.1| YdaM [Pantoea ananatis LMG 20103] gi|291152376|gb|ADD76960.1| YdaM [Pantoea ananatis LMG 20103] Length = 526 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 90/185 (48%), Gaps = 16/185 (8%) Query: 84 YISGSILKELFISY-NRISQLSRI-------DCLSGLLNHSAFISSLGSY---NEKLSIV 132 Y LK+ F++Y N I++ I D L+ L N F Y + S+ Sbjct: 337 YKESDRLKKSFLAYSNTINKTLAILRDDAITDHLTKLYNRRGFEQLTAPYLSAKNEHSLA 396 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 FDIDYFK+IND++GH +GDK + ++ L T V R GGEEF + EA Sbjct: 397 SFDIDYFKRINDHYGHDIGDKTLVAVAMFLKKGCRTNDIVCRFGGEEFVVFFPNTQISEA 456 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251 +AN +R+ I +Q + +TISAG+ HK I + DQ LY AK G Sbjct: 457 ESIANRIREHIACAQFSEIG----KMTISAGVESLAHHKNDIEETLLSVDQWLYQAKHEG 512 Query: 252 RNRVV 256 RNRVV Sbjct: 513 RNRVV 517 >gi|229180323|ref|ZP_04307666.1| Sensory box/GGDEF family protein [Bacillus cereus 172560W] gi|228603070|gb|EEK60548.1| Sensory box/GGDEF family protein [Bacillus cereus 172560W] Length = 415 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 246 YQEQERLAMIDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 305 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 306 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 364 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 365 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410 >gi|224371113|ref|YP_002605277.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223693830|gb|ACN17113.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 1268 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 99 RISQLSRIDCLSGLLNH----SAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QLS D L+GL N + +G YN LS++ DID FKQ+ND GH G Sbjct: 1105 KLEQLSVTDRLTGLYNRMKIDDTLLEEIGRVLRYNYPLSLILMDIDLFKQVNDTHGHQAG 1164 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ + + GR GGEEF + + A LA LR+ I Sbjct: 1165 DAVLIQMAKTMDKNIRSTDICGRWGGEEFMVICPHTDLKGALSLAEHLRESIARQIF--- 1221 Query: 212 SGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P I T S G+A+ + + + +I RAD+A+Y+AK+ GRNRV Sbjct: 1222 --PHVITQTGSFGVAQYGNGDSEADLIARADRAMYLAKEGGRNRV 1264 >gi|149911271|ref|ZP_01899893.1| GGDEF domain protein [Moritella sp. PE36] gi|149805656|gb|EDM65656.1| GGDEF domain protein [Moritella sp. PE36] Length = 727 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 12/169 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +L+ D L+G LN F I +KLS++ DID+FK IND +GH Sbjct: 558 DKYRELASRDTLTGALNRRKFNLILKQEIGFAKQDKQKLSLLLLDIDHFKNINDAYGHGG 617 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ D + V R+GGEEFA ++ +A I+A LR + S++ + Sbjct: 618 GDQVLRDFYDACFNSVKSSDIVARIGGEEFAILMPETNSTQAHIIAERLRHNV--SKLQV 675 Query: 211 SSGP-SIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 G +I +T+S G+A+ + ++ I D+ALY AK +GRN V+ Sbjct: 676 PYGQDNIRLTVSIGLAQWQEYDSLNAKEFIAHTDKALYQAKDNGRNCVI 724 >gi|121591285|ref|ZP_01678580.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121546869|gb|EAX57027.1| GGDEF family protein [Vibrio cholerae 2740-80] Length = 377 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 12/188 (6%) Query: 76 ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSI 131 + ++L+ +++G +L L ++R +QL+ D ++GLLN S L +++ L+I Sbjct: 194 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 252 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190 DID FKQIND +GH +GD+VI ++ +Q+ + V R GGEEF EQ Sbjct: 253 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 312 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248 I+ + S + + G TIS GI E + AD+ LYVAK Sbjct: 313 ITRIMQRIFDAVCRESPLILEPG----FTISGGIEVVESTTDRSFEDLFKAADEKLYVAK 368 Query: 249 KSGRNRVV 256 SG+N++V Sbjct: 369 TSGKNQLV 376 >gi|294140613|ref|YP_003556591.1| GGDEF domain-containing protein [Shewanella violacea DSS12] gi|293327082|dbj|BAJ01813.1| GGDEF domain protein [Shewanella violacea DSS12] Length = 341 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 18/211 (8%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKE------LFISYNRISQLSRIDCLSGLLN 114 LE +L SLV S I Y +G + K L + Q+ D L+G+ N Sbjct: 130 LEKVLGIVRSLVKESDDIRSSTQYFTGQLSKAQQEINALKQQLEKSEQIMLYDALTGIFN 189 Query: 115 HSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 AF + SL + L ++ DID+FK+ NDN+GH +GD+V+ ++ +L Sbjct: 190 RRAFDNDLRGSLSQSPDGLCLILADIDHFKEFNDNYGHQLGDQVLKVVAKRLQASCRDGA 249 Query: 171 FVGRLGGEEFA----AAALGSSEQEAAILANDLRKI-IENSQINISSGPSIHITISAGIA 225 + R GGEEFA + LGSS A + L KI +++ + ++ IT S G+A Sbjct: 250 KLYRYGGEEFAVIIPKSQLGSSRHLAEAMRRGLEKITLKDRRKDVRIN---KITASFGVA 306 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + +I +AD+ LY AK+ GRNRV+ Sbjct: 307 QWNKNLEGAELIEQADKLLYEAKRLGRNRVM 337 >gi|189424903|ref|YP_001952080.1| diguanylate cyclase with GAF sensor [Geobacter lovleyi SZ] gi|189421162|gb|ACD95560.1| diguanylate cyclase with GAF sensor [Geobacter lovleyi SZ] Length = 356 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 12/179 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 +Y R+S+L D L+GL N F + Y ++S++FFD+D+FK++ND FGH Sbjct: 177 NYRRVSELVVTDDLTGLHNARHFHELLEYELERSRRYKSQVSLLFFDLDHFKEVNDRFGH 236 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VG ++IA + + + R GG+E+ + +Q A +A +L + Sbjct: 237 LVGSRMIAEVGHLVKRHIRSSDRAARYGGDEYVVVLPNTGKQGALSVATNLLERFRAHLF 296 Query: 209 NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 S + IT S G A + H +++I AD A+Y AK++GRNRV FS E Sbjct: 297 LTDSNERVPITASFGAATFPDDAHDR--TSLIRAADSAMYEAKEAGRNRVEYFSGNETK 353 >gi|92114132|ref|YP_574060.1| diguanylate cyclase with PAS/PAC and GAF sensors [Chromohalobacter salexigens DSM 3043] gi|91797222|gb|ABE59361.1| diguanylate cyclase with PAS/PAC and GAF sensors [Chromohalobacter salexigens DSM 3043] Length = 574 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 12/196 (6%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---N 126 SL+++ S L ++ ++ ++L + ISQ D L+GLLN F ++ + Sbjct: 374 SLIVVLRDRSPYLQHLR-TVTRKLAKAEEMISQ----DALTGLLNRFGFKQAIDEFMVEA 428 Query: 127 EK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 E+ +++ DID+FK IND +GH +GD+ + ++ +L V R GGEEF Sbjct: 429 ERGVPFALLIADIDHFKDINDTYGHQLGDEALKIVASRLAEQLRDGDAVARYGGEEF-CM 487 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 + E +A +R+ + + + + G + +TIS G ++ RAD+A Sbjct: 488 LMTVPEDRVVEVAERIRRTVAATPVTLDDGKELALTISIGATYHTPGLDEDSMFERADEA 547 Query: 244 LYVAKKSGRNRVVCFS 259 LY AK+ GRNR V + Sbjct: 548 LYEAKEYGRNRTVMLN 563 >gi|260464199|ref|ZP_05812392.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] gi|259030002|gb|EEW31285.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] Length = 414 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 84/158 (53%), Gaps = 10/158 (6%) Query: 104 SRIDCLSGLLNHSAF-----ISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S +D LSGL N F ++ LG+ + +++V D+D+FK IND FGH GD+VI Sbjct: 235 SEVDTLSGLFNRGGFTRQAELAVLGAVRQGVPVALVIADLDHFKSINDGFGHASGDRVIE 294 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + L GR+GGEEFA G++ A + A R + I P+ Sbjct: 295 TFAGLLREAAAGHHAAGRIGGEEFAIILTGTNLAGARLFAEGTRSAF--GTLPIDGLPAD 352 Query: 217 H-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + T S G+AE E ++ ++ RAD+ALY+AK +GR+ Sbjct: 353 NRCTASFGVAELHPGETVADLMRRADEALYLAKNAGRD 390 >gi|257139582|ref|ZP_05587844.1| GGDEF domain-containing protein [Burkholderia thailandensis E264] Length = 466 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 9/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L+EL + ++ L+ D L+G N FI + + S++ D+D FK I Sbjct: 291 LQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTI 350 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 NDN+GH VGD V+ Q + + R+GGEEF A+ +A +R Sbjct: 351 NDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTT 410 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 411 IANASFGI-DGTHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 465 >gi|152983813|ref|YP_001346820.1| two-component response regulator [Pseudomonas aeruginosa PA7] gi|150958971|gb|ABR80996.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 327 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL NH F L +LS++ D+DYFK ND FGH GD Sbjct: 148 LQRLMNSDGLTGLSNHRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGD 207 Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + + R GGEEFA G+S A +LA +R+ +E+ QI + Sbjct: 208 EALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHD 267 Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P H+T+S G++ + +I ADQALY AK +GRN+V Sbjct: 268 QPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 315 >gi|118588079|ref|ZP_01545489.1| putative kinase/esterase [Stappia aggregata IAM 12614] gi|118439701|gb|EAV46332.1| putative kinase/esterase [Stappia aggregata IAM 12614] Length = 486 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 19/201 (9%) Query: 70 SLVIISITISLLLGYIS-------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 ++V + + +SL LG ++ G + L S ++ L+ D L+GL N F L Sbjct: 254 TIVPVIVILSLALGALAFGIAWRIGQLTTSLQASEHQNRYLALHDTLTGLANRLQFNRVL 313 Query: 123 GSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 S ++ +++ D+D FK +ND FGH GD VI ++++L G P V R+GG Sbjct: 314 ESSVKNLPDKPFAVIHCDLDKFKAVNDTFGHAAGDIVIRTMAERLTTAVGKPGLVCRIGG 373 Query: 178 EEFAAAALGSSEQEAAILANDL-RKIIENSQ--INISSGPSIHITISAGIAERCHKEPIS 234 +EF GS +E I DL R ++ + + ISSG I +S GIA + Sbjct: 374 DEFMVIYRGSVTREGLI---DLSRALVAAGELPVPISSGEIAQIGLSVGIAIAPKDGSTA 430 Query: 235 T-IIYRADQALYVAKKSGRNR 254 ++ R+D ALY +KK GR R Sbjct: 431 ELLVTRSDAALYQSKKLGRGR 451 >gi|157369976|ref|YP_001477965.1| diguanylate cyclase [Serratia proteamaculans 568] gi|157321740|gb|ABV40837.1| diguanylate cyclase [Serratia proteamaculans 568] Length = 568 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 3/157 (1%) Query: 106 IDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 +D L+ + N F SL + + L+ DID FK +NDN+GH +GD+V+ L Sbjct: 407 LDPLTNIYNRRKFFRECESLAASSYPLAFCLIDIDNFKNLNDNYGHHIGDQVLVAFGKLL 466 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 F + R GGEEFA + + A + + LR+ + ++ G + T S Sbjct: 467 QSTFRSSDIFCRYGGEEFAVILGNCTLENAREVISKLRERTHQFTLTLADGQKVRFTTSC 526 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 GIA+ + T I +AD+ALY +K +G++R+ ++ Sbjct: 527 GIAQVSDIRLLPTAIKQADEALYFSKNNGKDRIGIYT 563 >gi|70729605|ref|YP_259344.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens Pf-5] gi|68343904|gb|AAY91510.1| YaiC/YhcK/ArdA family protein [Pseudomonas fluorescens Pf-5] Length = 360 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 84/188 (44%), Gaps = 12/188 (6%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SI 131 L LGYI L + LSR D L+GLLNH A+ L ++ +I Sbjct: 162 PLALGYICYQQAVTLGRHKRELLALSRTDSLTGLLNHGAWKDQLEIEFQRCKRQAHGGAI 221 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID+FK IND +GH GD V+ LS L GR GG+EF Sbjct: 222 ALIDIDHFKAINDTYGHVAGDVVLRQLSKLLRQNLRVSDQAGRYGGDEFCVILPDVPLAH 281 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKK 249 AA L LR + P++ +++S G+A H + + + ADQALY AK Sbjct: 282 AAELMEALRGRF--GALGYEQSPALQVSLSIGLAAFNPLHDDAMG-WLNDADQALYAAKT 338 Query: 250 SGRNRVVC 257 GRN V C Sbjct: 339 CGRNNVTC 346 >gi|320529393|ref|ZP_08030481.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399] gi|320138359|gb|EFW30253.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399] Length = 591 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 18/180 (10%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + R+SQL+ D L+ LLN + L+++ DID+FK +N Sbjct: 411 EELNSANRRLSQLASRDALTNLLNRREMERLLQEAVRDAQENRTLLTVMLMDIDHFKGVN 470 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGDKV+ ++D + R GG+EF G++ + A + +R+ + Sbjct: 471 DTYGHDVGDKVLLTVADAISGTIRGSDAGCRWGGDEFFVILQGATLELAGRVGERIRRRV 530 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVVCFS 259 E +++ ++T+S G+A H +P + AD+ALY AKK GRN V C Sbjct: 531 EAAKMAFDG----NVTVSIGVA---HFDPERDNELQLFKNADEALYRAKKEGRNAVYCLG 583 >gi|75762353|ref|ZP_00742230.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490163|gb|EAO53502.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 386 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ +D L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 217 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 276 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 277 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 335 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 336 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 381 >gi|298292287|ref|YP_003694226.1| diguanylate cyclase [Starkeya novella DSM 506] gi|296928798|gb|ADH89607.1| diguanylate cyclase [Starkeya novella DSM 506] Length = 393 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 84/182 (46%), Gaps = 10/182 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQI 142 I+ EL R +L R D LSG+L+ +AF+ + E+ +V D+D+FK I Sbjct: 210 IIAELMAETAR--RLER-DSLSGVLSRAAFMERAAALLAALRPEERACLVMCDLDHFKSI 266 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH GD+VI L GR+GGEEF EA +R Sbjct: 267 NDRFGHAAGDEVIRAFGGVLAERASVGALCGRIGGEEFCLLLPEGDVGEAQRRIEAVRSA 326 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ + + G I +T S G+A E I + RAD ALY AK +GR+R + D Sbjct: 327 MDRLRYALVPG-EIRVTASFGLAVTGRGEHIDEALRRADLALYAAKAAGRDRHMLAQDAP 385 Query: 263 NN 264 Sbjct: 386 ER 387 >gi|110834123|ref|YP_692982.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2] gi|110647234|emb|CAL16710.1| GGDEF domain protein [Alcanivorax borkumensis SK2] Length = 364 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 78/172 (45%), Gaps = 9/172 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + L ++NR+S ++ D L+GL N F+ L N L + D+D+FKQ+N Sbjct: 191 RRLHEAHNRLSAIAVRDDLTGLYNRRHFLERLEEEMSRANRENNPLHLAIIDLDHFKQVN 250 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD V+ + + + R GGEEF +S Q LR Sbjct: 251 DTYGHHAGDDVLHRFAQLAAMGLRKSDLLARYGGEEFVVLFPHTSTQACQAAMERLRNRF 310 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +Q + S + SAG+ E I RAD+ALY AK GRNR+ Sbjct: 311 --AQQHYSFSGDLRSKFSAGLTPYQPGESAEEFIKRADRALYQAKDLGRNRI 360 >gi|24373054|ref|NP_717097.1| GGDEF family protein [Shewanella oneidensis MR-1] gi|24347227|gb|AAN54541.1|AE015592_14 GGDEF family protein [Shewanella oneidensis MR-1] Length = 596 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 11/175 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146 + R +++++D L+G+LN A F+ + + ++ FD+D+FK+IND++ Sbjct: 405 LQKRRFMRMAKMDALTGVLNRGAGQDLGENMFVQA-AARGGDYCVILFDLDHFKRINDSY 463 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD + + + L R+GGEEFA ++E + +A R IE Sbjct: 464 GHGTGDWALKKVVEVLKPHIRNGDVFARIGGEEFALFLPYANEAKGLDVAEQCRSRIEAI 523 Query: 207 QINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ SG IT S G++ + + +++RAD ALY AK +GRN V C+ D Sbjct: 524 DTHL-SGHKFTITASFGVSGMTKDDLSLDPLLHRADMALYAAKSNGRNCVSCYQD 577 >gi|114049063|ref|YP_739613.1| diguanylate cyclase with GAF sensor [Shewanella sp. MR-7] gi|113890505|gb|ABI44556.1| diguanylate cyclase with GAF sensor [Shewanella sp. MR-7] Length = 345 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 19/180 (10%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFF---DIDYFKQINDN 145 L + + L+ D L+G N F + ++ +++EK + +F DID+FK +ND Sbjct: 170 LRLQLKELEYLASTDHLTGAGNRRVFTQKILQAIDTFHEKGQLFYFGLLDIDHFKMLNDQ 229 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAAILANDLR 200 FGH GD V+ Q +V M R+GGEEFA +E E ND+R Sbjct: 230 FGHTAGDYVL-----QKIVAISEAMMTSSAELFRIGGEEFAIIFPEQTEYEPMQFFNDIR 284 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 + I + ++ P I +++S G + +++ R+D+ALY AK +GRNRVV F+ Sbjct: 285 EAIAKAALDFDGIP-ISVSVSIGFTTMSTADYAPESLLRRSDKALYQAKLAGRNRVVMFN 343 >gi|332991692|gb|AEF01747.1| diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2] Length = 668 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 13/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVG 151 ++ +L+ D L+GL N + SL + EK ++++F D+D FKQ+ND++GH G Sbjct: 233 QMEKLANFDTLTGLPNRQYLMKSLSIELARAKREKSQVALMFLDLDGFKQVNDSYGHDAG 292 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLRKIIENSQIN 209 DK++ +S ++ VGRLGG+EF +G ++ Q AI + KI + I+ Sbjct: 293 DKLLCGISSEISDAMRDGDVVGRLGGDEFLIILVGNPTNSQLEAIAKRLISKITKLDHID 352 Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 G + ++S GIA + ST++ AD A+Y AK G+ R V F+ Sbjct: 353 ---GWRVDPSVSIGIALATDSDYAASTLVTNADVAMYKAKNEGKGRYVWFT 400 >gi|323699407|ref|ZP_08111319.1| diguanylate cyclase [Desulfovibrio sp. ND132] gi|323459339|gb|EGB15204.1| diguanylate cyclase [Desulfovibrio desulfuricans ND132] Length = 395 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 11/193 (5%) Query: 74 ISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLG 123 I IT LG ++ + + +EL +S+L+ ID + L N F S Sbjct: 201 IEITSDDELGELAENYNLMSRELARCRFELSELAVIDPQTNLYNRRHFDEQARQFFESAR 260 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 Y + +S++ D+D+F+ +NDNF VGD V+ +++ V R GGEEF Sbjct: 261 RYEQPMSVMMGDLDHFRVLNDNFSREVGDMVLEKVAELFTRHTRKSDVVARYGGEEFVVL 320 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 ++ AAI ++R+ +E + P + +TIS G+A+ + ++++ RADQ Sbjct: 321 FTNTARDRAAIACENIRRAVEAYPWD-EFHPGLKVTISMGLADNVDLDSAASMVSRADQY 379 Query: 244 LYVAKKSGRNRVV 256 L AK GRN+V Sbjct: 380 LSAAKAGGRNQVA 392 >gi|315269068|gb|ADT95921.1| diguanylate cyclase [Shewanella baltica OS678] Length = 640 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 12/134 (8%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ FD D+FK+INDNFGH +GD+ + ++ + G +GR+GGEEF + Sbjct: 496 SVIIFDADHFKKINDNFGHELGDRALLTIASASQALTGNKDLIGRIGGEEFLILLPNTDA 555 Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKEP-ISTIIYR 239 + A LA+ L+ I S++ P+ + +T+SAG+A E +++ ++++ R Sbjct: 556 ERACELAHQLQAHI--SRLGAEDLPAELKLTVSAGVATLAPQKKTENTYQDKDFASLLKR 613 Query: 240 ADQALYVAKKSGRN 253 AD ALY AK +GRN Sbjct: 614 ADDALYEAKNAGRN 627 >gi|237746066|ref|ZP_04576546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes HOxBLS] gi|229377417|gb|EEO27508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes HOxBLS] Length = 1049 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 62/172 (36%), Positives = 86/172 (50%), Gaps = 11/172 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N + IS +E L+++F D+D FK +ND+ GH VG Sbjct: 614 RVQWLAHFDPLTGLPNRTLLHIRSNLAISLAQRRHEPLALMFLDLDNFKNVNDSLGHGVG 673 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ S +LV + RLGG+EF G+ AA LA L I Q NI Sbjct: 674 DELLKQFSQRLVNAVREQDTISRLGGDEFVLVLPGTDTDGAAYLAERLLNIAAR-QYNIE 732 Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 I++T+S GIA T+ AD A+Y AK+SGRN CF E Sbjct: 733 RH-EINLTVSIGIAMYPTDGTDFDTLWRSADAAMYRAKQSGRND-YCFFTTE 782 >gi|228909876|ref|ZP_04073697.1| Sensory box/GGDEF family protein [Bacillus thuringiensis IBL 200] gi|228849711|gb|EEM94544.1| Sensory box/GGDEF family protein [Bacillus thuringiensis IBL 200] Length = 430 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ +D L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 261 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425 >gi|289811671|ref|ZP_06542300.1| cellulose synthesis regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 163 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 3/137 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + S++ D+DYFK +ND FGH GD+V++ + + GR+GGEEF Sbjct: 20 RQPFSVIQLDLDYFKSVNDRFGHQAGDRVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLP 79 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQA 243 G+++ +A +A +R+ I + +I ++ ++ I+ S GI AE + AD+ Sbjct: 80 GATKAQALQIAERIRQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQSLADKR 139 Query: 244 LYVAKKSGRNRVVCFSD 260 LY AK+SGRNR +C SD Sbjct: 140 LYYAKQSGRNR-ICASD 155 >gi|255589233|ref|XP_002534887.1| conserved hypothetical protein [Ricinus communis] gi|223524420|gb|EEF27496.1| conserved hypothetical protein [Ricinus communis] Length = 297 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 77/162 (47%), Gaps = 19/162 (11%) Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S D LSGL N +SSL Y S++ FDID+FK+IND GH GDK I Sbjct: 144 SETDSLSGLANRRKLMSSLTEHFELFARYTTPASVLIFDIDHFKRINDAHGHLAGDKAIV 203 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPS 215 +D RLGG+EF + +A +A LR +I E + Sbjct: 204 TTADICRRELRATDVPARLGGDEFVVLMPHTDSAQALPIAERLRLRIAEQAG-------- 255 Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 TIS G++E + ++ RAD ALY AK+ GR+R+V Sbjct: 256 --ATISGGLSEMTRGDLSYEDVLKRADDALYRAKRDGRDRIV 295 >gi|168465468|ref|ZP_02699350.1| AdrA protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631582|gb|EDX50102.1| AdrA protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 370 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQLTLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|218780099|ref|YP_002431417.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218761483|gb|ACL03949.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 249 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 15/178 (8%) Query: 97 YNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 ++R+ L+ D L+GL N S IS L D+D+FK +ND +GH Sbjct: 75 FHRMRMLAAYDELTGLYNRRVGKMRLSEEISRSERRGSPLCAAMLDLDHFKAVNDTYGHQ 134 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ + + R GGEE A G+ ++A + LR + + +N Sbjct: 135 AGDRVLRHVCRIFRECLRAEDILIRYGGEEILAVMPGTELEDACDILERLRASVADEPLN 194 Query: 210 ISSGPSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 G I +T+SAG A R H+ +++ AD+ LY+AK+ GRN+VVCF D+E Sbjct: 195 -HKGRCIPVTVSAGAA-RLHEAGDGPNDAGSLVALADRRLYMAKQKGRNQVVCF-DLE 249 >gi|218530687|ref|YP_002421503.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] gi|218522990|gb|ACK83575.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] Length = 405 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 42/268 (15%) Query: 9 LSIWLCHEKNLESFSPHT---------FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY 59 L+IW ++ L S P + I + F++ I + IA +P++ Sbjct: 136 LTIWQGRDEPLVSRYPALVLLATYAGLYWIRLPLAFTMPIPASVAIA---------SPWF 186 Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 + L S+ + ++ ++ KE R++ + D L+G+ N A + Sbjct: 187 AI---------LCFAGTLFSVAIAFVFMALTKERAEREQRLA--AETDSLTGIANRRALV 235 Query: 120 SSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIA---FLSDQLVVVFGTPMFV-G 173 + + FD+D+FK +ND +GH VGD V+A ++D L+ P V G Sbjct: 236 AGAERHLAVAPAALLLFDLDHFKAVNDRYGHSVGDAVLAAFCHVADPLL----PPGAVFG 291 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232 R+GGEEFA E+ A +A D+R I ++ P + I +S G+A Sbjct: 292 RMGGEEFACLLPRLDERAAMRVAEDVRAAI--ARFAHPDYPELAIRVSVGVAAESQIGGS 349 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ RAD ALY AK +GR+RVV + Sbjct: 350 LDYLLRRADDALYQAKHAGRDRVVAAGE 377 >gi|157375214|ref|YP_001473814.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157317588|gb|ABV36686.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 343 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 10/161 (6%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+ L N AF + L E ++ DID+FKQ NDN GH +GDKV+ Sbjct: 178 LALTDQLTSLHNRRAFEEEVLIHMQRLTKTQESSCLLVIDIDHFKQFNDNHGHVIGDKVL 237 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++ L FV R GGEEF + +A I+A LR I + ++ + Sbjct: 238 TYIALALNQAVKGSDFVARYGGEEFVVLLPDTELADALIVAEQLRSKIADRKLTVGKDKK 297 Query: 216 I---HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + IT+S G A + + RAD+ALY AK GRN Sbjct: 298 LSLGSITVSIGAATLNISDDRESYFVRADEALYRAKSCGRN 338 >gi|81300620|ref|YP_400828.1| diguanylate cyclase [Synechococcus elongatus PCC 7942] gi|81169501|gb|ABB57841.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Synechococcus elongatus PCC 7942] Length = 1037 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 11/169 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGH 148 ++ Q + D L+G+LN FI+ + + LS+V DID+FK IND++GH Sbjct: 859 QKLQQQATTDALTGILNRRQFITLAQAELNRIYRIQRDTSLSLVIIDIDHFKTINDSYGH 918 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+V+ ++ RLGG+EF ++ ++A + + +R+++ + Sbjct: 919 TVGDQVLILWTNICQQNIREVDIFARLGGDEFVLMLPETNGKQAYQVMDRIRQLVIQQSL 978 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 ++ +I ITIS GIA + + + RAD+ALY AK+ GR+R++ Sbjct: 979 HLPQ-QAIAITISVGIAVWTPEILTLDQFLERADRALYQAKQQGRDRII 1026 >gi|120555025|ref|YP_959376.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120324874|gb|ABM19189.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 630 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 ++L I ++ +LS D L+GL N F S + E LS++ DID+FK N Sbjct: 442 RDLEILNEQLLELSATDPLTGLKNRGHFDKKFQSDVVHAYRFEETLSLLIVDIDHFKGFN 501 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH VGD + ++D + P R GGEEF + E A +A +R+ Sbjct: 502 DTYGHLVGDDCLKMVADCIKQHVTRPQDLAARYGGEEFVVLLPDTPEAGACRVAELIRED 561 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 I+ +S +H+T+S G+ + +T + AD ALY AK GRNRVV Sbjct: 562 IQKMAFRVSDQ-VLHLTVSIGVCSCAPSQADATKALFACADGALYRAKAEGRNRVVA 617 >gi|326797050|ref|YP_004314870.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326547814|gb|ADZ93034.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 300 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 110/246 (44%), Gaps = 22/246 (8%) Query: 32 SIFFSIFI-ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90 SIFF +I TVI + + L G + V N+ LV SI S+ + Sbjct: 55 SIFFESYIRPTVISLGECQEVQLSLIAKAGEKVPAVANIKLVGSSIYWSIYTAVARDKLY 114 Query: 91 KELFI-------SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDI 136 +EL + ++++L+RID L+ L N A L E+L S + DI Sbjct: 115 QELLLVRDQLEEETQKLTKLTRIDPLTRLRNRRAAFDDLNDLIERLKRQFVPASFIMIDI 174 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK++ND FGH GD V+ ++ L R GGEEF SS +E Sbjct: 175 DWFKKLNDKFGHQYGDDVLVKVAAILQSSTKVRDISARWGGEEFLVVLYDSSIEETRAFC 234 Query: 197 NDLRKIIENSQIN--ISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGR 252 L IE S +N I S+ + +SA ++ C E I + AD ALY AK +GR Sbjct: 235 KRLH--IEMSLLNASIEGEVSVSVGVSALKSDNLVCI-ELIENCLKEADVALYEAKSNGR 291 Query: 253 NRVVCF 258 NR F Sbjct: 292 NRTEYF 297 >gi|153000568|ref|YP_001366249.1| diguanylate cyclase [Shewanella baltica OS185] gi|151365186|gb|ABS08186.1| diguanylate cyclase [Shewanella baltica OS185] Length = 325 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 10/162 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 L+ D L+G LN + L Y ++ S++ DID+FK +NDNFGH +GD++ Sbjct: 164 HLANTDELTGALNRKQLKTKLELSVYEYQQQQIPASLLLIDIDFFKMVNDNFGHIMGDQL 223 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + S + + R GGEEF + + AAI+A DLR+ IE Sbjct: 224 LNKFSQHIQKKIRKDDLLFRFGGEEFLILLPNTQFESAAIVAEDLRRSIEEQHF---LDQ 280 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T S G+A+ + + T + D LY AK +GRN VV Sbjct: 281 HTQVTCSIGVADLRQADTLDTWLKTCDNLLYNAKNAGRNCVV 322 >gi|160897594|ref|YP_001563176.1| diguanylate cyclase [Delftia acidovorans SPH-1] gi|160363178|gb|ABX34791.1| diguanylate cyclase [Delftia acidovorans SPH-1] Length = 583 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 18/163 (11%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GLLN F ++ LS++ D+D+FK+IND GH +GD V+ Sbjct: 424 ARSDPLTGLLNRRGFDFQLDFAMALARRSGRPLSVLVIDVDHFKRINDQHGHDMGDAVLR 483 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ + + R+GGEEF A ++ A ++A LR+++ + P Sbjct: 484 TLARAFRMRLRESDVLARMGGEEFLALLPDTTADAAVVIAEQLRELLATT-------PMA 536 Query: 217 H---ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 H +T S G+A R + + ++ R D+ALY AK +GRN V Sbjct: 537 HGEPVTASVGVATLRGTTDTATAMLRRGDEALYEAKGAGRNNV 579 >gi|94501436|ref|ZP_01307955.1| sensory transduction protein kinase [Oceanobacter sp. RED65] gi|94426401|gb|EAT11390.1| sensory transduction protein kinase [Oceanobacter sp. RED65] Length = 371 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 15/163 (9%) Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 +D L+G+ A L + + + D+D+FK+ ND GH VGD V+ ++ + Sbjct: 207 VDELTGIAGRRALEFKLKTLPKHYYLAMLDVDHFKKFNDTHGHQVGDDVLRTVAKLISQT 266 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-------------ENSQINISS 212 + R GGEEFA + E + RK I +NS+ S Sbjct: 267 RQAKAY--RYGGEEFALVFKNGAVSEIVACLEETRKAIAEYPLYPKSRKRDKNSRGKGSQ 324 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +HIT+S G+A++ E +I RAD+ALY AKK GRNR+ Sbjct: 325 RKPLHITVSFGLAQQHKGESHPQVIERADKALYQAKKKGRNRI 367 >gi|198242044|ref|YP_002214338.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197936560|gb|ACH73893.1| AdrA protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 370 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQLTLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|78778209|ref|YP_394524.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78498749|gb|ABB45289.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM 1251] Length = 249 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 9/160 (5%) Query: 107 DCLSGLLNH---SAFISS---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N + F+ L N +++F DID FK+IND GH GD ++ L+ Sbjct: 87 DGLTGLYNRHYLNDFLEKFNILQKENSMFAVIFIDIDKFKEINDTIGHLAGDCILKSLAL 146 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 +L + + R GGEEF SE+ A +R+ I+NS I ++ITI Sbjct: 147 RLKYLTQDADILCRYGGEEFVIICSDISEENIVQKAQKIREEIQNS---IFECEHVNITI 203 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S G++ I++++ AD+ALY+AKKSGRN V F + Sbjct: 204 SIGLSFGKKGCDINSVLNEADEALYMAKKSGRNCVSVFDN 243 >gi|119775539|ref|YP_928279.1| sensory box protein [Shewanella amazonensis SB2B] gi|119768039|gb|ABM00610.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella amazonensis SB2B] Length = 751 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 12/181 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 S+LK+ + ++QL+ D L+ L N S I + +L+++ D+D FK Sbjct: 313 SLLKQ---TEAEVAQLAWHDPLTRLPNRSKLTTISQQQIKLAANRKTRLALLLIDVDLFK 369 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND+FGH GDKV+ LS++L + G + R+GG+EF + ++ + ++ Sbjct: 370 HINDSFGHLAGDKVLLSLSERLAALLGAEDTLARIGGDEFVLLTQVRRRDDIPVILSAIQ 429 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + S + S G S+ ++ S GIA + T++ AD A+Y AK+ GRNR ++ Sbjct: 430 RAFDTS-FDTSEGESVRLSASIGIAVYPDDGDNPDTLLKNADAAMYRAKQQGRNRHAFYT 488 Query: 260 D 260 + Sbjct: 489 E 489 >gi|329897318|ref|ZP_08272036.1| GGDEF family protein [gamma proteobacterium IMCC3088] gi|328921249|gb|EGG28648.1| GGDEF family protein [gamma proteobacterium IMCC3088] Length = 472 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 5/159 (3%) Query: 103 LSRIDCLSGLLNHS-AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+++D GL + + + +S N+ + + DID+FK +ND GH VGD+V+A +++ Sbjct: 311 LTQLDNRRGLEDKARSLLSRPVDVNKPVVVALLDIDHFKLLNDQHGHQVGDQVLAEFAER 370 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS----IH 217 L + VGR GGEEF G Q A +L +I + + + Sbjct: 371 LRAFCRSHDLVGRWGGEEFMLILEGLDRQAARARVQELHTMIGSRPFYCEGEAAQTFYVD 430 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T + G+A + ++I RAD+ALY K+ GRN+VV Sbjct: 431 VTATVGVAYYRSDDTFDSVISRADRALYRGKEQGRNQVV 469 >gi|327188359|gb|EGE55576.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 783 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 14/179 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL S +R + + D L+GLLN F I++ + ++L+ +F D+D FK IND Sbjct: 336 ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDSKIAAADAAGQELACLFVDLDRFKWIND 395 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203 N GH GDK + L ++L RLGG+EFA +E+ A + + I Sbjct: 396 NMGHAAGDKALIELVERLKTHLAPSDEAARLGGDEFAILLPAKDAERRAKAMCEQIASIF 455 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261 E P +H++ S GIA H + ++ ++D A+Y K+ G+N F ++ Sbjct: 456 ET-----PFAPDMHLSASIGIAIYPHHAATAAELLQKSDMAMYAKKRDGKNGAQLFDNV 509 >gi|312915648|dbj|BAJ39622.1| hypothetical protein STMDT12_C46790 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 354 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%) Query: 32 SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80 S+ +FI ++ F ANI F + L P GL + + L +V I+I + Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLTLPMVGIAIQHVI 163 Query: 81 LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134 Y + ++ +L ++ LS +D L+GL N + L + S ++ Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND++GH +GD+ + +S + + V R GGEEF + Q+A Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283 Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +R+ + + +I S+ ++T+S GIA + I I +AD+ALY AK GR Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342 Query: 253 NRVVCFSDIE 262 N ++ D+ Sbjct: 343 NHILVSDDMR 352 >gi|217418926|ref|ZP_03450433.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 576] gi|217398230|gb|EEC38245.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 576] Length = 688 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IND+ GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A D+ + + + N G ++ +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+SGR Sbjct: 406 AAKRSGR 412 >gi|167827626|ref|ZP_02459097.1| hypothetical protein Bpseu9_28352 [Burkholderia pseudomallei 9] gi|226195020|ref|ZP_03790611.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei Pakistan 9] gi|225932825|gb|EEH28821.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei Pakistan 9] Length = 688 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IND+ GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A D+ + + + N G ++ +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+SGR Sbjct: 406 AAKRSGR 412 >gi|16767795|ref|NP_463410.1| hypothetical protein STM4551 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16423119|gb|AAL23369.1| putative diguanylate cyclase/phosphodiesterase domain 1 containing protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] Length = 354 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%) Query: 32 SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80 S+ +FI ++ F ANI F + L P GL + + L +V I+I + Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLTLPMVGIAIQHVI 163 Query: 81 LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134 Y + ++ +L ++ LS +D L+GL N + L + S ++ Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND++GH +GD+ + +S + + V R GGEEF + Q+A Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283 Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +R+ + + +I S+ ++T+S GIA + I I +AD+ALY AK GR Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342 Query: 253 NRVVCFSDIE 262 N ++ D+ Sbjct: 343 NHILVSDDMR 352 >gi|163941785|ref|YP_001646669.1| diguanylate cyclase [Bacillus weihenstephanensis KBAB4] gi|229134854|ref|ZP_04263661.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST196] gi|163863982|gb|ABY45041.1| diguanylate cyclase [Bacillus weihenstephanensis KBAB4] gi|228648529|gb|EEL04557.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST196] Length = 430 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 99/217 (45%), Gaps = 29/217 (13%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108 F F + TP L E+LS I+ T + EL Y +L+ ID Sbjct: 231 FTFLLRATP-------LPEDLSRFIVKCTE-----------ITELDEIYQEQERLAMIDS 272 Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ + N F L + +EK++++ FDID FK +ND +GH GD + L+D Sbjct: 273 LTEIYNRLKFQQILETEWENVLRNDEKVALILFDIDNFKSVNDTYGHDFGDLALVQLADL 332 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + R GGEEF + E+EA +A LR IE SG S +T S Sbjct: 333 MKSKVEDQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKHF---SGIS-KLTAS 388 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G+A ++ RAD ALY AKK+G+N+V + Sbjct: 389 FGVALYEQGITREELMQRADIALYEAKKNGKNQVCIY 425 >gi|126174323|ref|YP_001050472.1| diguanylate cyclase [Shewanella baltica OS155] gi|125997528|gb|ABN61603.1| diguanylate cyclase [Shewanella baltica OS155] Length = 342 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 10/177 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139 G ++ L +S + D L+ L N A+ S+ + + S++ DID F Sbjct: 162 GQEVQNLKSEMENLSLAAMTDQLTSLHNRRAYELSIQDQIYLSQDHQTRCSLLLIDIDNF 221 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K ND +GH GDKV+A+++ L FV R GGEEF + +A +A +L Sbjct: 222 KAFNDTYGHLTGDKVLAYVALALKQCVRGDDFVARYGGEEFVVVLPNTHFHDALQVAENL 281 Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 R+ I ++ I + IT+S G+A + T+ RAD+ALY AK GRN Sbjct: 282 RERISERRLTIGKDKKLSLGAITVSIGLASLQQGDDAETLFGRADKALYQAKAEGRN 338 >gi|107024091|ref|YP_622418.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] gi|116691177|ref|YP_836800.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] gi|105894280|gb|ABF77445.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] gi|116649266|gb|ABK09907.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] Length = 452 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 14/178 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 ++LF ++ + + S D L+G N H+ F+ + E LS++ D+D FK Sbjct: 275 QQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDRFKAY 333 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD + +++ L P V R GGEEFA + + A ++A+++R Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVADEVRD 393 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 + + + P+ +++S G A + +ST +I AD ALY AK +GRNRVV Sbjct: 394 AVLRLDLAMPDSPAGRVSVSVGCAT-VSADDLSTPDALIEAADAALYRAKDAGRNRVV 450 >gi|309388336|gb|ADO76216.1| response regulator receiver modulated diguanylate cyclase [Halanaerobium praevalens DSM 2228] Length = 333 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 93/176 (52%), Gaps = 14/176 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +++ +D L+G+ N F +L +L+++ DID+FKQ ND +GH Sbjct: 156 KKLEKMALVDGLTGISNRRLFDKTLKKELKRARRKETELALIMLDIDHFKQYNDTYGHQE 215 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+ + ++ L F R GGEEFA +++ A +A D+RK I ++ Sbjct: 216 GDECLKEIASVLEANSKRASDFAARYGGEEFAVILPDTAKGGALKIAEDIRKDIMALKLE 275 Query: 210 ISSGP-SIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + P + ++T+S G++ ++ I + I +ADQALY AK++GRN+ V + Sbjct: 276 HKNSPIAEYVTVSLGVSSLQVKTEVSQKLIKSFIDKADQALYQAKETGRNKTVYYD 331 >gi|302669367|ref|YP_003832517.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302397031|gb|ADL35935.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 547 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 8/179 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDN 145 I+ L+ S R S+++R D L+ L N + L + + + D+D+FK IND Sbjct: 369 IIAHLYYSNKRRSRVARTDFLTQLPNRLKVMELLSQFEANKTPYGFIMLDVDHFKDINDT 428 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH VGD+VI ++ +L + G RLGG+EF A + Q A L + +++ Sbjct: 429 YGHKVGDEVIRMVAGRLQSLTGDGTIFARLGGDEFCAIFQEPTSQSAVRLCESIIDVMKP 488 Query: 206 SQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +S + IT+S G A EP + Y AD+ALYV K GRN F I+ Sbjct: 489 EF--ATSACILQITVSVGCALYPEDVSEPDKLMEY-ADKALYVTKDRGRNGYTLFGSID 544 >gi|194446449|ref|YP_002039624.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405112|gb|ACF65334.1| AdrA protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 370 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQLTLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|218899205|ref|YP_002447616.1| putative sensory box/GGDEF family protein [Bacillus cereus G9842] gi|218545137|gb|ACK97531.1| putative sensory box/GGDEF family protein [Bacillus cereus G9842] Length = 430 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ +D L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 261 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 425 >gi|90422977|ref|YP_531347.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gi|90104991|gb|ABD87028.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris BisB18] Length = 307 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+GL NH F I E LS + D+D+FK IND++GH GD Sbjct: 145 IVALTLTDSLTGLGNHRRFEQELSTEIKRFARTAEPLSALMVDLDHFKAINDSYGHDAGD 204 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+A + L R+GGEEF + Q+A + A +R + I +S Sbjct: 205 KVLAAFAALLRAQIRATEIAARIGGEEFVVLMPHTGLQQAMLTAERIRTALAAVPIPPAS 264 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 P +T S G+A E + R D ALY AK SGRN VV Sbjct: 265 QP---VTASFGVATLATAESRDAFMRRVDCALYAAKHSGRNCVVA 306 >gi|323484784|ref|ZP_08090141.1| hypothetical protein HMPREF9474_01892 [Clostridium symbiosum WAL-14163] gi|323401890|gb|EGA94231.1| hypothetical protein HMPREF9474_01892 [Clostridium symbiosum WAL-14163] Length = 611 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 99/179 (55%), Gaps = 16/179 (8%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQ 141 ISG KE+ N +S LS D L+GL+N AF+ + + E+ + FF D+D FK Sbjct: 434 ISGRKAKEM----NLLS-LSCTDALTGLMNREAFVGRVDTLIEEKNKGFFFMIDVDNFKM 488 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND GH GD +A + + L F V R+GG+EFAA +S+ E A +L Sbjct: 489 VNDTKGHEAGDGCLARIGELLRQSFRDYDPVARIGGDEFAAFMSDTSDIENAQKKAEL-- 546 Query: 202 IIENSQINISSGP-SIHITISAGIAERCHKEPIS-TIIYR-ADQALYVAKKSGRNRVVC 257 I+ S++ S G + +++S GIA C + S +YR AD A+Y+AK+ G+NR +C Sbjct: 547 IL--SKLKHSQGEGEMEMSVSIGIAA-CPDDGQSYQELYRNADHAMYLAKREGKNRFIC 602 >gi|254524374|ref|ZP_05136429.1| two-component system response regulator [Stenotrophomonas sp. SKA14] gi|219721965|gb|EED40490.1| two-component system response regulator [Stenotrophomonas sp. SKA14] Length = 452 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L+GL N F+ L + + +++ DID+FK IND +GH GD Sbjct: 273 LQDLATRDFLTGLPNRRCFLEQSQRQLPQLQLHGQCVAVAMIDIDHFKHINDTYGHEAGD 332 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + ++ + + + R GGEEF + EA + +LR+ I +++I S Sbjct: 333 DALRAVAGAVAAHARSQDLIARFGGEEFCLLVPDMEQDEALLYFEELRQRIAALEVDIGS 392 Query: 213 GPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ +T+S G+ R ++ + +I AD+ LY+AK GRNRV C + Sbjct: 393 A-TLRMTVSIGLCCLRPQRDALHRLISEADRQLYLAKAGGRNRVSCTT 439 >gi|95928328|ref|ZP_01311076.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95135599|gb|EAT17250.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 481 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 8/163 (4%) Query: 99 RISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +++ D L+ + N A + S++ FD+D FKQIND GH G Sbjct: 313 RLEEMALTDKLTRIANRQAIDLHLQQLFKEQQRHQVPFSVILFDLDNFKQINDTHGHIAG 372 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ +++ + VGR GGEEF +A A +R I++ I Sbjct: 373 DAVLQNIANIVTTELRDCDVVGRWGGEEFLVLLKHCQLDDALKRAESIRLAIQSYAIGFE 432 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +++ T S G+ E ++ +T++ RADQALY+AK++G+NR Sbjct: 433 E-QTLYTTASFGVVEYRDQDDHNTLLKRADQALYIAKQNGKNR 474 >gi|92118971|ref|YP_578700.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis X14] gi|91801865|gb|ABE64240.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis X14] Length = 781 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 13/169 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLS-IVFFDIDYFKQINDNFGHPVG 151 +IS L+R D L+ L N +F + ++ + +LS ++F D+D FKQIND GHP G Sbjct: 337 KISHLARFDSLTELPNRLSFRDEIERLLAIANSESRLSALLFIDLDQFKQINDTLGHPCG 396 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQIN 209 D+++ ++D+L + FV R GG+EF + S+E+ AA+ + ++ E +I+ Sbjct: 397 DRLLCIVADRLRGMLRPDDFVARFGGDEFVVFQQNIQSAEEAAALSRRVVERLTERYEID 456 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I S GIA ++ +AD ALY AK GR CF Sbjct: 457 RH---LVEIGASIGIALTSPGVTADNLLKQADMALYRAKAGGRG-TFCF 501 >gi|324016617|gb|EGB85836.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3] Length = 362 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 25/197 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E + + + + P + + IS G+A P++ + Y Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVA------PLNPQMSHY 345 Query: 239 R-----ADQALYVAKKS 250 R AD ALY AKK+ Sbjct: 346 REWLKSADLALYKAKKA 362 >gi|320108085|ref|YP_004183675.1| PAS/PAC sensor-containing diguanylate cyclase [Terriglobus saanensis SP1PR4] gi|319926606|gb|ADV83681.1| diguanylate cyclase with PAS/PAC sensor [Terriglobus saanensis SP1PR4] Length = 310 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 16/187 (8%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138 S + E + ++S L+ D L+G+ N AF +L ++S++ DID Sbjct: 116 SARDISERKLLEEKLSALALTDGLTGIANRRAFDEALEREWKRTLREGSQMSLLLLDIDR 175 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FKQ ND +GH VGD + ++ +V V + V R GGEE A A +A Sbjct: 176 FKQFNDQYGHQVGDDCLRTVASLIVGVVRSTDIVARYGGEEIAIILPAPDRSGAMEIAEK 235 Query: 199 LRKIIENSQINISSGPSIH--ITISAGIAERCHKE------PISTIIYRADQALYVAKKS 250 +R +E+ QI P +T+S GIA ++ P S ++ AD ALY AK Sbjct: 236 VRAAVESLQITHEGNPEGGNLVTVSIGIATALARQGGTIRMPESLLLA-ADNALYKAKHE 294 Query: 251 GRNRVVC 257 GRNRV Sbjct: 295 GRNRVAT 301 >gi|307717735|ref|YP_003873267.1| hypothetical protein STHERM_c00180 [Spirochaeta thermophila DSM 6192] gi|306531460|gb|ADN00994.1| hypothetical protein STHERM_c00180 [Spirochaeta thermophila DSM 6192] gi|315187351|gb|EFU21107.1| diguanylate cyclase [Spirochaeta thermophila DSM 6578] Length = 346 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/133 (42%), Positives = 81/133 (60%), Gaps = 11/133 (8%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALG 186 LS++ D+D+FK++ND +GH GDKV+ ++ V+ F T R GGEEF A L Sbjct: 217 LSLIMADLDHFKRLNDTYGHLAGDKVLQEIAR--VIHFHTRKNDIAARYGGEEF-AVLLP 273 Query: 187 SSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQ 242 + EAA+ +A+ +R +E+ +I G +HITIS G+A+ R P I RAD+ Sbjct: 274 HTPLEAAVGIADRIRIAVEHLEIPY-GGAVMHITISLGVAQYDPRRDATP-EDFIERADK 331 Query: 243 ALYVAKKSGRNRV 255 ALY+AK+ GRNRV Sbjct: 332 ALYMAKEKGRNRV 344 >gi|228980720|ref|ZP_04141025.1| Sensory box/GGDEF family protein [Bacillus thuringiensis Bt407] gi|228778889|gb|EEM27151.1| Sensory box/GGDEF family protein [Bacillus thuringiensis Bt407] gi|326941817|gb|AEA17713.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 386 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ +D L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 217 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 276 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 277 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 335 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 336 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 381 >gi|213966927|ref|ZP_03395077.1| diguanylate cyclase/phosphodiesterase [Pseudomonas syringae pv. tomato T1] gi|301385112|ref|ZP_07233530.1| GGDEF [Pseudomonas syringae pv. tomato Max13] gi|213928249|gb|EEB61794.1| diguanylate cyclase/phosphodiesterase [Pseudomonas syringae pv. tomato T1] Length = 533 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 120/258 (46%), Gaps = 35/258 (13%) Query: 23 SPHT-----FMIYFSIFFSIFIATVIF---IANIFLFYIGLTPFYGLEYILVENLSLVII 74 SP T + + + FSIF+ V++ + ++ ++ + L Y ++ E V+ Sbjct: 6 SPRTVRKYLYTVLWFYLFSIFLLAVVWEFKLESLAMYAMDLP--YDPDFEDAERWRFVLT 63 Query: 75 SITISLLLGYISGSILKELFI----SYNRI-------SQLSRIDCLSGLLN----HSAFI 119 S +LL + +LK L SYN + L+R D LSGLLN H + Sbjct: 64 STAFALLSMVVPFILLKRLMQRLQSSYNDLLVAQALSDSLARHDPLSGLLNRRVFHEQLV 123 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178 + L + + ++ D+D FK IND GH VGD I +++ L G V RLGG+ Sbjct: 124 ARLQQESTRTAVFLIDLDKFKLINDTHGHAVGDAAICAVAESLRDATAGWQASVARLGGD 183 Query: 179 EFAAAALGSSEQ-EAAILANDLRKIIENSQINISSG--PSIHITISAGIA-ERCHKEPIS 234 EF A G Q E A LA ++ ++I +SS P + ++ + G+A Sbjct: 184 EFGLAVSGDFNQFELATLAENVL-----AKIALSSAVLPRVILSATLGVAISPLDGSDAE 238 Query: 235 TIIYRADQALYVAKKSGR 252 ++ RAD A+Y K SGR Sbjct: 239 VLLQRADSAMYRGKHSGR 256 >gi|121535227|ref|ZP_01667042.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Thermosinus carboxydivorans Nor1] gi|121306218|gb|EAX47145.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Thermosinus carboxydivorans Nor1] Length = 553 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152 + QLS D L+ + N F+ L E K S+V DID FK IND FGH GD Sbjct: 388 LRQLSVTDSLTNVYNRRYFVQKLEEEIERAKRAGSKFSLVMLDIDRFKSINDRFGHNAGD 447 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +++ + + R GGEEF ++ +A +L +LR+ + SQ++I Sbjct: 448 LVLKSMAEMIKNRIRKIDTLARWGGEEFVMLLPETTVNKAVVLVEELRESL--SQMDI-- 503 Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 P + +T S G+ C + I T++ R D +Y AK +GRN V +SD Sbjct: 504 -PGVGRVTASFGVVGYCPGDTIDTLMQRVDALMYEAKAAGRN-CVRYSD 550 >gi|15604107|ref|NP_220622.1| response regulator PleD [Rickettsia prowazekii str. Madrid E] gi|3860799|emb|CAA14699.1| unknown [Rickettsia prowazekii] gi|292571833|gb|ADE29748.1| Regulatory components of sensory transduction system [Rickettsia prowazekii Rp22] Length = 450 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 77/162 (47%), Gaps = 8/162 (4%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N F I N KL ++ DID FK +ND +GH GDKV+ Sbjct: 287 LAAKDGLTGLFNRRYFDIHLKQMIEKANKENIKLYLLMCDIDNFKHVNDTYGHQAGDKVL 346 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214 +S L + R GGEEF +A A +R IE I Sbjct: 347 TTVSRILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMDFYIEGQIE 406 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + TIS G+ E +E I + I RAD+A+Y AK +G+N+VV Sbjct: 407 PLKKTISIGVTEYKKEESIESFIKRADKAMYEAKTTGKNKVV 448 >gi|148256883|ref|YP_001241468.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gi|146409056|gb|ABQ37562.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] Length = 833 Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 96/179 (53%), Gaps = 11/179 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNF 146 ++L ++ R+ +L++ D L+GL N + F+ + N+ + ++ D+D FK +ND+ Sbjct: 360 RQLALANRRVLELAQTDALTGLANRAFFLEEMERINDEKGGRFTVFLLDLDRFKNVNDSL 419 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKII- 203 GH GD+++ ++ +L + RLGG+EFA G S+Q A+ LA + ++I Sbjct: 420 GHGAGDELLVQVAQRLRSQLREEDVLARLGGDEFALIQAGFSDQRASATELAQRITRLIA 479 Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 E QI SG + I S GI+ H ++ +AD ALY +K +GR+ + D+ Sbjct: 480 EPFQI---SGQRVEIGTSIGISLAPQHGRDQEHLLKKADLALYRSKSAGRSCYTMYDDV 535 >gi|229013254|ref|ZP_04170395.1| Sensory box/GGDEF family protein [Bacillus mycoides DSM 2048] gi|228748021|gb|EEL97885.1| Sensory box/GGDEF family protein [Bacillus mycoides DSM 2048] Length = 430 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 99/217 (45%), Gaps = 29/217 (13%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108 F F + TP L E+LS I+ T + EL Y +L+ ID Sbjct: 231 FTFLLRATP-------LPEDLSRFIVKCTE-----------ITELDEIYQEQERLAMIDS 272 Query: 109 LSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ + N F L + +EK++++ FDID FK +ND +GH GD + L+D Sbjct: 273 LTEIYNRLKFQQILETEWENVLRNDEKVALILFDIDNFKSVNDTYGHDFGDLALVQLADL 332 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + R GGEEF + E+EA +A LR IE SG S +T S Sbjct: 333 MKSKVEDQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKHF---SGIS-KLTAS 388 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G+A ++ RAD ALY AKK+G+N+V + Sbjct: 389 FGVALYEQGITREELMQRADIALYEAKKNGKNQVCIY 425 >gi|256377498|ref|YP_003101158.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Actinosynnema mirum DSM 43827] gi|255921801|gb|ACU37312.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Actinosynnema mirum DSM 43827] Length = 673 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 7/167 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++ + L+ D L+GL N A L + S++ D+D FK +ND GH VGD+ Sbjct: 233 HDELLALAEQDPLTGLANRRAVTRELERRLATGGTGSLLLLDLDNFKDVNDLRGHAVGDR 292 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ L+ L +GRLGG+EFA + +AA +A LR I +++ +++ Sbjct: 293 LMRALAAALRTRLEPEHLIGRLGGDEFAVVLPDTGPADAARVAEHLRDTI--ARLPLAT- 349 Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P+ TIS G+A + ++ AD ALY +K +GRNRV + Sbjct: 350 PATRTTISTGVAGYGTSGDTWELVLANADLALYASKAAGRNRVTVYE 396 >gi|153802148|ref|ZP_01956734.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|153824919|ref|ZP_01977586.1| GGDEF family protein [Vibrio cholerae MZO-2] gi|254225499|ref|ZP_04919109.1| GGDEF family protein [Vibrio cholerae V51] gi|124122341|gb|EAY41084.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|125621969|gb|EAZ50293.1| GGDEF family protein [Vibrio cholerae V51] gi|149741431|gb|EDM55461.1| GGDEF family protein [Vibrio cholerae MZO-2] Length = 489 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%) Query: 76 ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSI 131 + ++L+ +++G +L L ++R +QL+ D ++GLLN S L +++ L+I Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190 DID FKQIND +GH +GD+VI ++ +Q+ + V R GGEEF EQ Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248 I+ + S + + G T+S GI E + AD+ LYVAK Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480 Query: 249 KSGRNRVV 256 SG+N++V Sbjct: 481 TSGKNQLV 488 >gi|300312514|ref|YP_003776606.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gi|300075299|gb|ADJ64698.1| GGDEF domain protein [Herbaspirillum seropedicae SmR1] Length = 346 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 19/159 (11%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+G+ N F+ L + DID FK+IND+FGH GD+ + + Sbjct: 195 DPLTGIDNRRRFMQQLPIILQAGQPSDACFLMIDIDNFKKINDDFGHASGDEALILTARA 254 Query: 162 LVVVFGTPMFVGRLGGEEFAAA----ALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + + +GR+GGEEF A L +EQ AA L ++R QI+I + P Sbjct: 255 MQSAL-SEGALGRMGGEEFGIALSGGGLAHAEQVAAKLLQEVR------QIHIHARP--- 304 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S GIA +S ++ ADQALY AK++G++R V Sbjct: 305 LTVSIGIARATDHSSVSKVLSAADQALYQAKRAGKDRYV 343 >gi|229494653|ref|ZP_04388413.1| diguanylate cyclase [Rhodococcus erythropolis SK121] gi|229318446|gb|EEN84307.1| diguanylate cyclase [Rhodococcus erythropolis SK121] Length = 348 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 11/192 (5%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE------ 127 +S T+ L ++ G++ + L ++ R +L+ D L+ L N F+ + Y+ Sbjct: 121 VSATVIWLPVFMIGALRRSLVLTQARYRELAHTDPLTNLPNRRGFLDRIERYHRTSTVSS 180 Query: 128 -KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 ++ + D+D+FKQIND FGH GD+ + + + + + R GGEEF A Sbjct: 181 AQVGFLMIDVDHFKQINDLFGHSAGDQTLRSVVAAITRTATARVLIARSGGEEFVAFFAA 240 Query: 187 SSEQEAAILANDLR-KIIENSQINISSGPSIHITIS--AGIAERCHKEPISTIIYRADQA 243 + + LA +R + E+ + +S G +I+ T+ AG + E + +RAD Sbjct: 241 ADVDDVMTLAERIRASVAESCDVTVSIG-AIYCTLDDHAGSPDMSLGELTDLLTHRADAL 299 Query: 244 LYVAKKSGRNRV 255 +Y AK GRN V Sbjct: 300 MYAAKAEGRNTV 311 >gi|167723092|ref|ZP_02406328.1| hypothetical protein BpseD_28998 [Burkholderia pseudomallei DM98] Length = 688 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IND+ GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A D+ + + + N G ++ +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+SGR Sbjct: 406 AAKRSGR 412 >gi|4732058|gb|AAD28578.1|AF121341_2 putative response regulator CelR2 [Rhizobium leguminosarum] Length = 457 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 11/176 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 L S + +L+ D L+GL N + L + LS++ DID FK +ND Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKHVND 339 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ S ++ R GGEEF +S + AA +A LR IE Sbjct: 340 TYGHDGGDEVLREFSSRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAAAVAERLRAAIE 399 Query: 205 NSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 ++ + SG ++++T S GIA R P ++ +AD ALY AK +GRNRVV Sbjct: 400 SAPFMLKHSGEALNVTASFGIASRIASVLTP-GQLMKQADLALYEAKNTGRNRVVA 454 >gi|325282742|ref|YP_004255283.1| diguanylate cyclase [Deinococcus proteolyticus MRP] gi|324314551|gb|ADY25666.1| diguanylate cyclase [Deinococcus proteolyticus MRP] Length = 607 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 8/168 (4%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q S D L+GL N +A ++ S E LS++ D+D+FK+ ND FGH GD Sbjct: 421 LRQQSIRDALTGLYNRRYYEDHLAASVARALSSGEPLSLLALDVDHFKRFNDTFGHDAGD 480 Query: 153 KVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V+ + L T R GGEEFA G EA A+ LR + + + + Sbjct: 481 AVLVRVGAALREAAQRTGEAACRPGGEEFALLLPGVDAAEALRRADALRAEVASWTLKHA 540 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +TIS G+A +++ +AD+ALY AK++GRNRV+ +S Sbjct: 541 GLSLGRVTISVGVASLEQGGTPASLARQADEALYAAKRAGRNRVLAWS 588 >gi|291618996|ref|YP_003521738.1| YneF [Pantoea ananatis LMG 20103] gi|291154026|gb|ADD78610.1| YneF [Pantoea ananatis LMG 20103] Length = 510 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 102/194 (52%), Gaps = 14/194 (7%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYN 126 L + +I +S L+ +S +++L R++ + D L+ LL+ S L S Sbjct: 306 LGVATIALSPLIVAVSMDAIRQL---NERLALRADYDFLTQLLSRSGLYEHLRNEACSEQ 362 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 ++ ++ D+DYFK +NDNFGH GD+V+ ++ ++ + G + R GGEEF Sbjct: 363 RQVGVILLDVDYFKSVNDNFGHDAGDRVLEEIARRISPLVGNHGHICRFGGEEFVIVQFD 422 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK------EPISTIIYRA 240 S + LA +R+ I + + G ++ +T+S G+A + E ++ +I A Sbjct: 423 LSPEMIYSLAEGIRQSIVKEKF-LLHGNAVTVTVSLGLAYGQAQPGVEWAETVNRLISAA 481 Query: 241 DQALYVAKKSGRNR 254 D+ LY++K++GRN+ Sbjct: 482 DKNLYISKRNGRNQ 495 >gi|291279342|ref|YP_003496177.1| hypothetical protein DEFDS_0949 [Deferribacter desulfuricans SSM1] gi|290754044|dbj|BAI80421.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 435 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 85/170 (50%), Gaps = 12/170 (7%) Query: 100 ISQLSRI-----DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 +SQ SR D L+ + N F I S + S++ FDID FK+INDNFG Sbjct: 263 LSQKSRQQEIVSDYLTKIYNRKFFDETLKYTIKSSKRHKTPYSLISFDIDNFKKINDNFG 322 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V+ LS+ + R+GGEEFA ++ + A+ILA +R+ +EN Sbjct: 323 HDKGDTVLIELSNIVKSNLRQSDIFARIGGEEFAIILPQTNFKGASILAEKIREHVENHH 382 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + ++ I++ E +T+ D ALY AKK G+NRVV Sbjct: 383 FSFNKEYTVTISLGLISIEEDFDVDFNTLYKLVDNALYQAKKEGKNRVVA 432 >gi|260776362|ref|ZP_05885257.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260607585|gb|EEX33850.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 488 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 18/200 (9%) Query: 62 EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---SAF 118 +Y L+ SL I+ +T+ L Y++ + + F +L+ D ++GLLN AF Sbjct: 301 KYSLIVTGSLYILLVTV---LFYVNTRVERSYF------RELAARDPMTGLLNRRGMEAF 351 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 + + +++E L++ DID FK IND +GH VGD I F+++Q+ V R GGE Sbjct: 352 LRNT-THSEYLALSVLDIDNFKSINDAYGHDVGDDAICFMAEQIEKNIRDSDAVARFGGE 410 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTI 236 EF G ++ + +R+ I N+ G T+S G I + Sbjct: 411 EFVVYLRGRDVEKMRMTMERVREAISRYSANVVEGG---FTVSGGVEIVRTEENSDFERL 467 Query: 237 IYRADQALYVAKKSGRNRVV 256 AD+ LY AK SG+NR+V Sbjct: 468 FKAADEKLYEAKNSGKNRLV 487 >gi|206579932|ref|YP_002240580.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae 342] gi|288937275|ref|YP_003441334.1| diguanylate cyclase [Klebsiella variicola At-22] gi|290512679|ref|ZP_06552045.1| membrane-associated diguanylate cyclase [Klebsiella sp. 1_1_55] gi|206568990|gb|ACI10766.1| membrane-associated diguanylate cyclase [Klebsiella pneumoniae 342] gi|288891984|gb|ADC60302.1| diguanylate cyclase [Klebsiella variicola At-22] gi|289775020|gb|EFD83022.1| membrane-associated diguanylate cyclase [Klebsiella sp. 1_1_55] Length = 348 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 121/267 (45%), Gaps = 22/267 (8%) Query: 8 FLSIWLCH--EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYIL 65 F +W H K + PH + ++ +FI T+ F NI F + P + + I+ Sbjct: 78 FGMLWAWHVVAKAMLLTPPHFNYLVIALLSILFIGTIAFSNNITAFTLHSLPTFLICLIM 137 Query: 66 VEN---------LSLVIISITISLLL----GYISGSILKELFISYNRISQLSRIDCLSGL 112 E L I IT+ ++ + ++ +L N ++ LS +D L+GL Sbjct: 138 SEGEQWLRMTYCFVLPIAGITLQNIIQKRNDAFTQGLMDKLMQERNTLNDLSMLDPLTGL 197 Query: 113 LNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 N + L + + ++ DID+FK ND++GH +GD+ + +S + + Sbjct: 198 YNRRGLQNRLDTLLALDGDNHFVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRNAVRS 257 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITISAGIAE 226 V R GGEEF SSE+ A A +R+ + + +I + + ++TIS G+ Sbjct: 258 RDIVARFGGEEFMVLLTNSSEETAWQAAERIRQRVYDLKIPHMFNESVATNVTISIGLTP 317 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRN 253 + I + RAD ALY AK GRN Sbjct: 318 LI-DDNIEQALARADGALYEAKNKGRN 343 >gi|254246830|ref|ZP_04940151.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] gi|124871606|gb|EAY63322.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] Length = 460 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 14/178 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 ++LF ++ + + S D L+G N H+ F+ + E LS++ D+D FK Sbjct: 283 QQLFEAHATLIRSSARDGLTGAFNRSHFNDHFHTLFLQAR-RQGEPLSLLMVDVDRFKAY 341 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD + +++ L P V R GGEEFA + + A ++A+++R Sbjct: 342 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVADEVRD 401 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 + + + P+ +++S G A + +ST +I AD ALY AK +GRNRVV Sbjct: 402 AVLRLDLAMPDSPAGRVSVSVGCATVAADD-LSTPDALIEAADAALYRAKDAGRNRVV 458 >gi|90410000|ref|ZP_01218017.1| hypothetical protein P3TCK_04516 [Photobacterium profundum 3TCK] gi|90329353|gb|EAS45610.1| hypothetical protein P3TCK_04516 [Photobacterium profundum 3TCK] Length = 291 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 11/179 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQ 141 S++ + ++ L+ D L+GL N FI + GS +E S+ DID FK Sbjct: 111 SVVTDRIQREKQLINLAARDELTGLFNRRYFIETYNTLIKSGSIHE-YSMAIVDIDLFKN 169 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND++GH GDK++ +++ + + RLGGEEF S + LR Sbjct: 170 VNDSYGHLAGDKMLTHIANTVSESMNEDEHIARLGGEEFVLLLKEGSHVKLVSRLETLRD 229 Query: 202 IIENSQINISSG---PS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I+N ++++ S PS I T+S G+ + + ++AD+ALY AK++GRN+VV Sbjct: 230 TIQNQKVSVLSTHNVPSVISCTVSIGLTKIMKNTTFKSSYFKADRALYQAKRNGRNQVV 288 >gi|24251273|gb|AAN46193.1| unknown protein [Synechococcus elongatus PCC 7942] Length = 960 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 11/169 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGH 148 ++ Q + D L+G+LN FI+ + + LS+V DID+FK IND++GH Sbjct: 782 QKLQQQATTDALTGILNRRQFITLAQAELNRIYRIQRDTSLSLVIIDIDHFKTINDSYGH 841 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+V+ ++ RLGG+EF ++ ++A + + +R+++ + Sbjct: 842 TVGDQVLILWTNICQQNIREVDIFARLGGDEFVLMLPETNGKQAYQVMDRIRQLVIQQSL 901 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 ++ +I ITIS GIA + + + RAD+ALY AK+ GR+R++ Sbjct: 902 HLPQ-QAIAITISVGIAVWTPEILTLDQFLERADRALYQAKQQGRDRII 949 >gi|42525094|ref|NP_970474.1| hypothetical protein Bd3766 [Bdellovibrio bacteriovorus HD100] gi|39577305|emb|CAE81128.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 627 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 17/170 (10%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+ D L+ + N IS+ + +S+V FDID+FK+IND FGH VG Sbjct: 456 RMRELAMTDELTRIPNRRHVLEYAQQSISTCQRQGKSMSVVIFDIDHFKRINDTFGHAVG 515 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI +++ + +GR+GGEEF + A +A LR+ I S + + Sbjct: 516 DEVIKRVAEIGKMALRKGDMIGRIGGEEFLLILPFTEPLPAKEVAERLRREI--SLYDFT 573 Query: 212 S-GPSIHITISAGIAERCH-----KEPISTIIYRADQALYVAKKSGRNRV 255 P++ +T+SAG++ C+ + I ++I +AD+ALY K++GRN V Sbjct: 574 DLAPNLTVTVSAGVS--CYTATDKQGHIDSLIQQADEALYSVKQNGRNGV 621 >gi|88857654|ref|ZP_01132297.1| sensory box protein [Pseudoalteromonas tunicata D2] gi|88820851|gb|EAR30663.1| sensory box protein [Pseudoalteromonas tunicata D2] Length = 725 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 11/173 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S I Q + D L+GL N + F IS Y +K ++ F D+D+FK++ND GH Sbjct: 284 SQQMIWQQANFDHLTGLPNRNMFTERLKQEISESKRYQQKFALFFIDLDHFKEVNDTLGH 343 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+++ ++++L ++ +GR+GG+EF AL + + + +K+I+ ++ Sbjct: 344 GAGDQLLIEVAERLQLILRESDTIGRIGGDEF--TALIPHINQTCDIDSLAQKLIQTIEL 401 Query: 209 NIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G SI I+ S GI H E I ++ ADQA+Y +K++GR R F+ Sbjct: 402 PFYIDGESIFISASIGITLFPDHSEKIDELLKFADQAMYRSKENGRKRFSYFT 454 >gi|120556492|ref|YP_960843.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120326341|gb|ABM20656.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 364 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N L + S+V D+D FK+IND+FGH GD+V+ Sbjct: 190 ARTDELTGLANRRDMQGRLNTEFSRFERSGHHFSVVLIDLDLFKRINDDFGHDAGDEVLR 249 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +D + + R GGEEF ++ +A LA LR + ++ + ++ Sbjct: 250 QFADLVRQMVRQSDVAARWGGEEFLLLLPDTTLLQALTLAERLRAEVAATRFHHRE-QTL 308 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +TISAG+ I+ ++ +AD LY AK+SGRNR+ Sbjct: 309 PVTISAGVCSISKSGSINELLKQADVQLYNAKESGRNRI 347 >gi|326622086|gb|EGE28431.1| AdrA protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 365 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 169 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 227 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EF Sbjct: 228 HSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQLTLRGSDIIGRFGGDEF 287 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 288 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 338 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 339 YREWLKSADMALYKAKNAGRNRT 361 >gi|313895972|ref|ZP_07829526.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975397|gb|EFR40858.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 591 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 18/180 (10%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + R+SQL+ D L+ LLN + L+++ DID+FK +N Sbjct: 411 EELNSANRRLSQLASRDALTNLLNRREMERLLQEAVRDAQENRTLLTVMLMDIDHFKGVN 470 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGDKV+ ++D + R GG+EF G++ + A + +R+ + Sbjct: 471 DTYGHDVGDKVLLTVADAISGTIRGSDAGCRWGGDEFFVILQGATLELAGRVGERIRRRV 530 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVVCFS 259 E +++ ++T+S G+A H +P + AD+ALY AKK GRN V C Sbjct: 531 EAAKMAFDG----NVTVSIGVA---HFDPERDNELQLFKNADEALYRAKKEGRNAVYCLG 583 >gi|307824674|ref|ZP_07654898.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum SV96] gi|307734328|gb|EFO05181.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum SV96] Length = 734 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 8/164 (4%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F I + + S++ D+D FK IND++GHP GD + ++ Sbjct: 310 DPLTGLHNRRQFNDILHYEIGRSERHKHEFSVLMLDLDDFKDINDSYGHPTGDTALCAIA 369 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D L+ R+GG+EFA + + A ++A ++ + + I S G H+T Sbjct: 370 DALLEHTRNGDLCARIGGDEFAIILTETGPEGARVVAENVSRALREMAITSSQGNRFHLT 429 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +S G+ + I T++ D A+Y AK G++ V F E Sbjct: 430 VSIGVTSYPVDGQTIDTLLEGVDAAMYKAKDMGKDSVCTFDATE 473 >gi|229098515|ref|ZP_04229456.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-29] gi|229117541|ref|ZP_04246913.1| Sensory box/GGDEF family protein [Bacillus cereus Rock1-3] gi|228665861|gb|EEL21331.1| Sensory box/GGDEF family protein [Bacillus cereus Rock1-3] gi|228684837|gb|EEL38774.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-29] Length = 430 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEVEWDNVIRNDEKMAIILFDIDNFKTVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 425 >gi|187927638|ref|YP_001898125.1| diguanylate cyclase [Ralstonia pickettii 12J] gi|187724528|gb|ACD25693.1| diguanylate cyclase [Ralstonia pickettii 12J] Length = 585 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 13/165 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 +S+++ D L+ LLN AF G+ + ++++ FDID+FK+IND +GH VGD Sbjct: 405 LSRMAETDPLTQLLNRRAFEDRAGAMCKSPQPKARLIALIMFDIDHFKRINDTYGHAVGD 464 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + ++ + V R+GGEEFA S +A +A+ LR I +++ + + Sbjct: 465 EALRTVARLCRSEGPSADMVARIGGEEFAVMVWADSLAQARAVADHLRHRI--AEVTVPT 522 Query: 213 GPSIHITISA----GIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G + +++A A + ++ RAD LY AK +GRN Sbjct: 523 GTDLPCSMTASFGVAAAPAADGPELEPLLRRADHLLYAAKLAGRN 567 >gi|16263692|ref|NP_436485.1| Diguanylate cyclase [Sinorhizobium meliloti 1021] gi|14524407|gb|AAK65897.1| Diguanylate cyclase [Sinorhizobium meliloti 1021] Length = 448 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 12/180 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL + R+ +L++ D L+G+ N + +L +++ DID FK +ND Sbjct: 263 ELADANARLERLAKTDPLTGIANRRWMMETLNRLWSSGAERRPGTAMLMCDIDDFKSLND 322 Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH GD+ + ++ + V V R GGEEF G++E+ A A +R + Sbjct: 323 RLGHAEGDRCLVKVAGIIQSSVRRNRDHVARYGGEEFLVVLPGANEEAAVATAERIRASV 382 Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVVCFS 259 E + + N +S + ++T+S G+A + E I + +AD ALY+AK++GRNRVV + Sbjct: 383 EAASLPNPASRVAPYVTLSIGVAAQAPGEEIVAPEKLQNQADAALYLAKQAGRNRVVLYQ 442 >gi|89094787|ref|ZP_01167721.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92] gi|89080952|gb|EAR60190.1| diguanylate cyclase (GGDEF domain) [Oceanospirillum sp. MED92] Length = 474 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 13/165 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++ D L+GL N + ++ YN +V D+D+FK++ND++GH VG Sbjct: 314 KLELMATTDKLTGLYNRTKIDELLQNELNRTERYNHDFGVVMIDVDFFKEVNDHYGHHVG 373 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INI 210 D+V+ +D L + GR GG+EF + + ++A+ L I N + + I Sbjct: 374 DEVLKEYADILSNEIRRTDYAGRWGGDEFIVICPETDIEGLKLIASKLCDAIANHEFVVI 433 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G T S GI+ + I+T++ RAD+ALY AK GRN V Sbjct: 434 GDG-----TASLGISTPQDGDTITTLLNRADKALYQAKNDGRNTV 473 >gi|94311111|ref|YP_584321.1| diguanylate cyclase [Cupriavidus metallidurans CH34] gi|93354963|gb|ABF09052.1| diguanylate cyclase (GGDEF domain protein) [Cupriavidus metallidurans CH34] Length = 416 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 17/185 (9%) Query: 94 FISYNRISQL----SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 ++++R+ Q+ +R D L+ +L+ AF L + L++ F D+D+FK I Sbjct: 222 LMAHDRLRQIIERRARHDDLTDVLSRGAFWEELELACKQAERSRKPLTVAFMDLDHFKAI 281 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD V+ + L V +GRLGGEEFA + + ++ L + Sbjct: 282 NDLYGHLAGDSVLRHFAGLLRKVAAPDSVIGRLGGEEFAIVMPATGLETGRAISVRLSAL 341 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS--D 260 + + P I T+S G+AE E ++ R+D+ALY AK+ GRN C S D Sbjct: 342 VRATPCPSEPDP-IAYTVSIGMAEWQLGENADAVMRRSDRALYDAKQMGRN---CVSSHD 397 Query: 261 IENNT 265 E T Sbjct: 398 AEEFT 402 >gi|332529343|ref|ZP_08405304.1| PAS family GGDEF/EAL protein [Hylemonella gracilis ATCC 19624] gi|332041141|gb|EGI77506.1| PAS family GGDEF/EAL protein [Hylemonella gracilis ATCC 19624] Length = 772 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 17/172 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + +L+ D L+GL N +L + L+++ D+D FK +NDN GH GD V+ Sbjct: 344 LRRLAHTDSLTGLANRFMLRDTLNRLIAQKRPLALLAIDLDRFKAVNDNHGHSAGDAVLQ 403 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKIIENSQINIS 211 ++++L T + RLGG+EFA A L ++ A + + L + +E ++ Sbjct: 404 AVAERLRAHLPTEALLARLGGDEFAVVLSEPADLPKADTLAQRVVDALAQPVEIGSRSLR 463 Query: 212 SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDI 261 G S+ +T H EP+S ++ +AD A+Y AK+SGR R ++ + Sbjct: 464 IGASVGLTTR-------HNEPVSLDGLLVQADMAMYAAKESGRGRWARYTPL 508 >gi|240139060|ref|YP_002963535.1| diguanylate cyclase precursor with GGDEF motif; putative membrane protein [Methylobacterium extorquens AM1] gi|240009032|gb|ACS40258.1| diguanylate cyclase precursor with GGDEF motif; putative membrane protein [Methylobacterium extorquens AM1] Length = 405 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 42/268 (15%) Query: 9 LSIWLCHEKNLESFSPHT---------FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY 59 L+IW ++ L S P + I + F++ I + IA +P++ Sbjct: 136 LTIWQGRDEPLVSRYPALVLLATYAGLYWIRLPLAFTMPIPASVAIA---------SPWF 186 Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 + L S+ + ++ ++ KE R++ + D L+G+ N A + Sbjct: 187 AI---------LCFAGTLFSVAIAFVFMALTKERAEREQRLA--AETDSLTGIANRRALV 235 Query: 120 SSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIA---FLSDQLVVVFGTPMFV-G 173 + + FD+D+FK +ND +GH VGD V+A ++D L+ P V G Sbjct: 236 AGAERHLAVAPAALLLFDLDHFKAVNDRYGHSVGDAVLAAFCHVADPLL----PPGAVFG 291 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232 R+GGEEFA E+ A +A D+R I ++ P + I +S G+A Sbjct: 292 RMGGEEFACLLPRLDERAAMRVAEDVRAAI--ARFAHPDYPELAIRVSVGVAAESQIGGS 349 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ RAD ALY AK +GR+RVV + Sbjct: 350 LDYLLRRADDALYQAKHAGRDRVVAAGE 377 >gi|205359321|ref|ZP_02668878.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205337060|gb|EDZ23824.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 308 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 22/276 (7%) Query: 8 FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58 F IW H + + F + S+ +FI ++ F ANI F + L P Sbjct: 32 FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91 Query: 59 ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112 GL + + L +V I+I + Y + ++ +L ++ LS +D L+GL Sbjct: 92 NGNEQGLRILYLLALPMVGIAIQHVIQKSYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151 Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 N + L + S ++ DID+FK ND++GH +GD+ + +S + + Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 211 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226 V R GGEEF + Q+A A +R+ + + +I S+ ++T+S GIA Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + I I +AD+ALY AK GRN ++ D+ Sbjct: 272 LTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 306 >gi|254410216|ref|ZP_05023996.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196183252|gb|EDX78236.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 327 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 11/181 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 + ++L + + +L+ +D L+G+ N F L LS++ DID+FK Sbjct: 145 QLYQKLEQANRELQRLATLDGLTGVANRRRFDQYLDDEWWRMIREESPLSLILCDIDFFK 204 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 + ND +GH GD + ++D L + V R GGEEFA ++ A+++A +L Sbjct: 205 KYNDTYGHQAGDACLRRVADALRFCAKRSVDLVARYGGEEFAIVLPNTTTIGASLVAEEL 264 Query: 200 RKIIENSQI-NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256 R ++ +I + +S S ++T+S G+A + P + ++ AD ALY AK SGRNR V Sbjct: 265 RSLVHGLKITHAASAISEYVTLSLGVASLYPEPDTPPAKLVAEADMALYQAKASGRNRYV 324 Query: 257 C 257 Sbjct: 325 A 325 >gi|126657184|ref|ZP_01728350.1| GGDEF family protein [Cyanothece sp. CCY0110] gi|126621455|gb|EAZ92166.1| GGDEF family protein [Cyanothece sp. CCY0110] Length = 509 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 29/223 (13%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILK-------------ELFISYNRISQL 103 PFY L + + + +II+ LL+ ++ ++L+ +L + +S+L Sbjct: 265 PFYSLSMLWI-TIGGIIIAFLTGLLIFSLTKTLLQLNQEIKERKEVELQLTKTNKELSKL 323 Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + +D L+ + N F + L E LS++ D+DYFK+ ND +GHP GD+ + Sbjct: 324 ASLDGLTQIANRYYFDTYLKKEWNRLSRQREPLSLILCDVDYFKKYNDRYGHPQGDECLK 383 Query: 157 FLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGP 214 ++ + P R GGEEFA ++ A +A +L+K I N ++ + S Sbjct: 384 QVAKAIEKAAQRPADLAARFGGEEFAMILPKTNLDGAIKVAKNLQKYISNLKLEHKQSQI 443 Query: 215 SIHITISAGIAE-RCHKEPI---STIIYRADQALYVAKKSGRN 253 + +IT+S GIA CH P +I AD ALY +K GRN Sbjct: 444 NQYITLSIGIAHTHCH--PFYSSQKLIDAADHALYRSKNKGRN 484 >gi|257094362|ref|YP_003168003.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046886|gb|ACV36074.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 357 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 10/176 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIN 143 ++L R + + ID L+GL N F +L + E+ + ++ D+D FK++N Sbjct: 164 QQLRQEVARAREEALIDGLTGLSNRKGFDLALTTCLEQATPEMPGPCLLMIDLDNFKRLN 223 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+V++ + L R GGEEFA + A LA LR ++ Sbjct: 224 DGLGHVFGDRVLSSVGQILRANVKGKDTAARYGGEEFAVILPQTPRGGAIGLAEALRALV 283 Query: 204 ENSQINI--SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+I GP I +IT+S G+A+ E + + RAD+ALY+AK GRNRV+ Sbjct: 284 AASRIRRVGDEGPLIGNITVSIGVADYLAGESPTDFVNRADRALYLAKTQGRNRVI 339 >gi|254561654|ref|YP_003068749.1| diguanylate cyclase [Methylobacterium extorquens DM4] gi|254268932|emb|CAX24893.1| diguanylate cyclase precursor with GGDEF motif; putative membrane protein [Methylobacterium extorquens DM4] Length = 405 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 42/268 (15%) Query: 9 LSIWLCHEKNLESFSPHT---------FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY 59 L+IW ++ L S P + I + F++ I + IA +P++ Sbjct: 136 LTIWQGRDEPLVSRYPALVLLATYAGLYWIRLPLAFTMPIPASVAIA---------SPWF 186 Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 + L S+ + ++ ++ KE R++ + D L+G+ N A + Sbjct: 187 AI---------LCFAGTLFSVAIAFVFMALTKERAEREQRLA--AETDSLTGIANRRALV 235 Query: 120 SSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIA---FLSDQLVVVFGTPMFV-G 173 + + FD+D+FK +ND +GH VGD V+A ++D L+ P V G Sbjct: 236 AGAERHLAVAPAALLLFDLDHFKAVNDRYGHSVGDAVLAAFCHVADPLL----PPGAVFG 291 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232 R+GGEEFA E+ A +A D+R I ++ P + I +S G+A Sbjct: 292 RMGGEEFACLLPRLDERAAMRVAEDVRAAI--ARFAHPDYPELAIRVSVGVAAESQIGGS 349 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ RAD ALY AK +GR+RVV + Sbjct: 350 LDYLLRRADDALYQAKHAGRDRVVAAGE 377 >gi|224586375|ref|YP_002640174.1| hypothetical protein SPC_4690 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470903|gb|ACN48733.1| hypothetical protein SPC_4690 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 354 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%) Query: 32 SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80 S+ +FI ++ F ANI F + L P GL + + L +V I+I + Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLALPMVGIAIQHVI 163 Query: 81 LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134 Y + ++ +L ++ LS +D L+GL N + L + S ++ Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND++GH +GD+ + +S + + V R GGEEF + Q+A Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283 Query: 195 LANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +R+ + + +I + + ++TIS GIA + I I +AD+ALY AK GR Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTISIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342 Query: 253 NRVVCFSDIE 262 N ++ D+ Sbjct: 343 NHILVSDDMR 352 >gi|168234685|ref|ZP_02659743.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738368|ref|YP_002117468.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713870|gb|ACF93091.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291857|gb|EDY31207.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 304 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 22/276 (7%) Query: 8 FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58 F IW H + + F + S+ +FI ++ F ANI F + L P Sbjct: 28 FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 87 Query: 59 ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112 GL + + L +V I+I + Y + ++ +L ++ LS +D L+GL Sbjct: 88 NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 147 Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 N + L + S ++ DID+FK ND++GH +GD+ + +S + + Sbjct: 148 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 207 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226 V R GGEEF + Q+A A +R+ + + +I S+ ++T+S GIA Sbjct: 208 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 267 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + I I +AD+ALY AK GRN ++ D+ Sbjct: 268 LADRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 302 >gi|39997411|ref|NP_953362.1| response regulator [Geobacter sulfurreducens PCA] gi|39984302|gb|AAR35689.1| response regulator [Geobacter sulfurreducens PCA] gi|298506348|gb|ADI85071.1| response receiver-modulated diguanylate cyclase [Geobacter sulfurreducens KN400] Length = 301 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 9/157 (5%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G++N A I S + LSI DID+FK++ND +GH GD+V+ Sbjct: 142 DPLTGVMNRRAIIDHLEKELSRVKRDGGSLSIGILDIDHFKRVNDRYGHQTGDEVLCGCV 201 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + +GRLGGEEF A G+ + + L LR I +++ + P + +T Sbjct: 202 GVLGGLLRDYDLLGRLGGEEFLVVAPGTGD-DCNHLYERLRAAIASTKFTSRAKP-VSVT 259 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+A + ++ AD ALY AK+SGR+RVV Sbjct: 260 VSIGVAACDGTAGLDELLAAADDALYRAKRSGRDRVV 296 >gi|330952727|gb|EGH52987.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7] Length = 355 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 15/240 (6%) Query: 21 SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---IISIT 77 S S +I S ++ + +A L + L+P GL+ V L + I S++ Sbjct: 97 SLSVAVMIILCSTLLVVYTRDYLLVA--VLAWCILSPAQGLDTDSVATLFMTLFFITSVS 154 Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134 + ++ + L+ + ++ +LS D L+ +LN A + +L + N + Sbjct: 155 LGSVMNHTYTRTLRTVLSLEHQFRELSLTDDLTPILNRRALMQALDKHVLNNSAGYFLML 214 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID FK IND FGH GD+ + ++ L G+ F GR+GGEEF SE EA Sbjct: 215 DIDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAF-GRMGGEEFGVILPMCSEDEARE 273 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +L I S ++ P +T SAG+A+ S ++ AD LY AK+ G++R Sbjct: 274 YVLNLLDCIRKS---LAVSP---LTCSAGLADIPAAVDSSEVLKTADINLYQAKRGGKDR 327 >gi|297566221|ref|YP_003685193.1| diguanylate cyclase [Meiothermus silvanus DSM 9946] gi|296850670|gb|ADH63685.1| diguanylate cyclase [Meiothermus silvanus DSM 9946] Length = 247 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 100/192 (52%), Gaps = 11/192 (5%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN 126 I+ + I+ + Y ++ +L +Y+ + +LS D L+ N FI ++ + Sbjct: 51 IVPLIIAPVFSYFQLRLIAQLEQAYSELHRLSITDYLTNTHNRRYFIQQAQQMFAMAQRD 110 Query: 127 EK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K LS++ FD D FK+IND GH VGD+V+A +++ V R GGEEFA Sbjct: 111 LKPLSVLLFDADDFKKINDTHGHLVGDQVLARIAEVTRAHVRKGDLVARYGGEEFAVLLP 170 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQA 243 + EA +A + + I N+ + + P I T+S G+ E H+ + ++ +AD A Sbjct: 171 NTQIPEALEVAMRIHQEILNNPVTYAGSP-IVATVSMGVVALELSHRT-LDELLAKADGA 228 Query: 244 LYVAKKSGRNRV 255 LY AK +G+NR+ Sbjct: 229 LYRAKNTGKNRI 240 >gi|167582365|ref|ZP_02375239.1| GGDEF domain protein [Burkholderia thailandensis TXDOH] Length = 454 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 9/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L+EL + ++ L+ D L+G N FI + + S++ D+D FK I Sbjct: 279 LQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTI 338 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 NDN+GH VGD V+ Q + + R+GGEEF A+ +A +R Sbjct: 339 NDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTT 398 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 399 IANASFGI-DGTHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 453 >gi|26987301|ref|NP_742726.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas putida KT2440] gi|24981947|gb|AAN66190.1|AE016246_7 response regulator [Pseudomonas putida KT2440] Length = 451 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 82/158 (51%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + LS DID+FK+IND GHP+GD+VI L+ Sbjct: 292 DSLTGLYNHTHILQLLEDCSFRARREQQPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 351 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 L F+GR GGEEFA ++ A + +++R+ ++I + P + Sbjct: 352 LFLKQRLRKTDFIGRYGGEEFAIVMPNTALDAAHKVLDEIRRRF--AEILYPAQPRDLQC 409 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T SAG+ + T+ AD+ALY AK +GRN VV Sbjct: 410 TFSAGVVQLDEGLDALTMASAADEALYRAKHAGRNCVV 447 >gi|171319506|ref|ZP_02908608.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] gi|171095278|gb|EDT40266.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] Length = 492 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 14/194 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I +S++LG + L+ + + + L+R D L+GL N +F L + Sbjct: 300 IAVSVMLG----TQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRSRSV 355 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 S++F D+D FK ND +GH GD +A ++ + P R GGEEF + Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 415 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALY 245 E AA +A +R I+ + + H+T S G+A E ++I AD+ALY Sbjct: 416 PETGAAQIAERIRAAIDELALEHAGSEHGHVTASIGLASWTPEEDEEAGSVIKAADEALY 475 Query: 246 VAKKSGRNRVVCFS 259 AK +GRN+V F Sbjct: 476 YAKAAGRNKVAAFQ 489 >gi|217975287|ref|YP_002360038.1| PAS/PAC and Chase sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223] gi|217500422|gb|ACK48615.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica OS223] Length = 1215 Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 10/182 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 + E +S RI L+ D L+ L N + S L + + +++++F D+D+FK I Sbjct: 776 ISERKVSEERIHFLAHHDSLTLLPNRLSLQSRLEVVFREALASDSQIAVMFIDMDHFKNI 835 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH VGD+++ ++ +L + G V RLGG+EF A ++ E A LA LR Sbjct: 836 NDTLGHHVGDQLLLEVARRLKNIVGDTDTVARLGGDEFVVALSDTNHDEVASLAEALRSG 895 Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + SQ I + ++H + S GI+ + + ++ AD A+Y AK +GRN F+ Sbjct: 896 L--SQTYIINNQALHSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAA 953 Query: 262 EN 263 N Sbjct: 954 MN 955 >gi|153002714|ref|YP_001368395.1| PAS/PAC and Chase sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185] gi|151367332|gb|ABS10332.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica OS185] Length = 1215 Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 10/182 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 + E +S RI L+ D L+ L N + S L + + +++++F D+D+FK I Sbjct: 776 ISERKVSEERIHFLAHHDSLTLLPNRLSLQSRLEVVFREALASDSQIAVMFIDMDHFKNI 835 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH VGD+++ ++ +L + G V RLGG+EF A ++ E A LA LR Sbjct: 836 NDTLGHHVGDQLLLEVARRLKNIVGDTDTVARLGGDEFVVALSDTNHDEVASLAEALRSG 895 Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + SQ I + ++H + S GI+ + + ++ AD A+Y AK +GRN F+ Sbjct: 896 L--SQTYIINNQALHSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAA 953 Query: 262 EN 263 N Sbjct: 954 MN 955 >gi|170721412|ref|YP_001749100.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619] gi|169759415|gb|ACA72731.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida W619] Length = 699 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 17/179 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIND 144 E ++ +I ++ D L+GL N + F L G N+KL+ D+D FK IND Sbjct: 264 EELAAHAQIHHMAHHDALTGLPNRTLFNERLKQALVRGHQNDKLTAALCLDLDNFKNIND 323 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH GDK++ L +L + RLGG+EFA G +EAA N +++IE Sbjct: 324 SLGHAFGDKLLRALGKRLRRELREQDTLARLGGDEFAVVLTGLDGREAAC--NTAKRLIE 381 Query: 205 NS----QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 QI G + +S GIA E ++ AD ALY AK++GRNR CF Sbjct: 382 AICPPFQI---EGHQFTVGVSIGIAIAPDDNEQAEQLLGYADMALYEAKRNGRNRYECF 437 >gi|89092611|ref|ZP_01165564.1| serine/threonine kinase with two-component sensor domain [Oceanospirillum sp. MED92] gi|89083123|gb|EAR62342.1| serine/threonine kinase with two-component sensor domain [Oceanospirillum sp. MED92] Length = 1752 Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 6/160 (3%) Query: 104 SRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 + D L+G+LN A + Y +E + + D+DYFK++ND + H GD+V+ Sbjct: 1593 AHTDPLTGILNRRAVLDLSSQYKKAAEDESVFVAMLDLDYFKRLNDTYSHSAGDQVLKAF 1652 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + ++ + R+GGEEF SE++A ++ +R+ I + S + + Sbjct: 1653 ASEVSGLLRDGDVFARMGGEEFLVMLSVGSEEQAELILQRIREKIAMMTVPFDS-VDLKV 1711 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 T+S G A + ++AD ALY AK GRN VVC Sbjct: 1712 TVSIGFAAWSSDAEFKQVTHQADLALYEAKGRGRNMVVCL 1751 >gi|260767442|ref|ZP_05876379.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972] gi|260617554|gb|EEX42736.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972] Length = 606 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 21/173 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGH 148 N++ +LS D L+ L N F L + +N +V DID+FK+IND GH Sbjct: 439 NQLRELSEKDSLTHLWNRRKFEQELQTQTQLVERYAHNHDACLVLIDIDFFKRINDEQGH 498 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+VI ++ L + F+ R+GGEEFA ++ EA + + LR + Q Sbjct: 499 DQGDRVIIQVAQILTHQLRSTDFIARIGGEEFAVIMPHTAIDEAHRVVDRLRAAVAIDQ- 557 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259 S+ +TISAG+ + S Y+ AD ALY +K GRNRV VC S Sbjct: 558 ------SLTVTISAGVTDLTFDSNRS---YKCADIALYESKTLGRNRVSVCHS 601 >gi|218780676|ref|YP_002431994.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218762060|gb|ACL04526.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 309 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 12/170 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +L+ D L+ L N F +L Y LS++ FDID FK ND +GH G Sbjct: 136 KLQELAVTDGLTKLYNSRHFYETLDVEIRRARRYGRPLSLLLFDIDKFKNFNDTYGHIEG 195 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ--IN 209 D+ +A ++ + R GGEEF + E+EA + +++ E ++ ++ Sbjct: 196 DRALARIARAVQDCIRLTDTAFRYGGEEFTVLMPETDEEEALGVG---QRVCEEARDLVH 252 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G +H+TIS G+ + E ++ ++ R D+A+Y AK++G N+V S Sbjct: 253 RVDGKDVHLTISVGVTQCIPGEDLADMVKRVDEAMYKAKRAGGNQVAALS 302 >gi|194447645|ref|YP_002048574.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194405949|gb|ACF66168.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 354 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%) Query: 32 SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80 S+ +FI ++ F ANI F + L P GL + + L +V I+I + Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLALPMVGIAIQHVI 163 Query: 81 LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134 Y + ++ +L ++ LS +D L+GL N + L + S ++ Sbjct: 164 QKSYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND++GH +GD+ + +S + + V R GGEEF + Q+A Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283 Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +R+ + + +I S+ ++T+S GIA + I I +AD+ALY AK GR Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342 Query: 253 NRVVCFSDIE 262 N ++ D+ Sbjct: 343 NHILVSDDMR 352 >gi|114797892|ref|YP_760661.1| diguanylate cyclase [Hyphomonas neptunium ATCC 15444] gi|114738066|gb|ABI76191.1| diguanylate cyclase [Hyphomonas neptunium ATCC 15444] Length = 291 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 16/175 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ +++ D L+GLLN FI S + + +IV D+D+FK++ND +GH Sbjct: 76 RRLEEMAWTDALTGLLNRRFFIHAAEEERSRMRRTKQSAAIVLIDLDHFKEVNDLYGHSG 135 Query: 151 GDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD V+ A +L F +GR GGEEF S++ A I+ LR+ IE + Sbjct: 136 GDLVLKEIAAIAHSELRGPFDR---LGRWGGEEFVVLLSCVSKEHAMIVCERLRRRIEAA 192 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I + + +T S G+ + P++ I AD ALY K+ GRN+V+ F D+ Sbjct: 193 TIFVGDK-EVSVTASFGLCMMSPETPLNAAIDCADGALYEVKRLGRNKVL-FRDV 245 >gi|113969555|ref|YP_733348.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113884239|gb|ABI38291.1| diguanylate cyclase [Shewanella sp. MR-4] Length = 578 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 12/200 (6%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYN 126 + IT +L L + S L+ L ++ ++ D L+G N S + +N Sbjct: 376 MPITDNLELQQMVSS-LETLKTYAAQVKAMAETDGLTGCYNRRYLDSQIKKELSYANDHN 434 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAAL 185 LS+V FDID FK+ ND +GH GD+ + + D + P + R GGEEF Sbjct: 435 MPLSVVMFDIDNFKEFNDKYGHVAGDQCLKQVVDAAKSILQRPTDILARYGGEEFTLLLP 494 Query: 186 GSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242 S ++A +A LR+ I+E + + SS S +TIS G+A + + +I AD+ Sbjct: 495 SSHCEDAYRIAERLRETIMELAIPHQSSSHSGVVTISLGVACWQPAQSLDANLVISDADE 554 Query: 243 ALYVAKKSGRNRVVCFSDIE 262 ALY AK++GRNR + E Sbjct: 555 ALYQAKQAGRNRTIALRHPE 574 >gi|296238978|gb|ADH01501.1| diguanylate cyclase [Pseudomonas sp. 2663] Length = 467 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 8/176 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQI 142 L+EL + ++ ++ D L+G N FI + +N S++ D+D+FK I Sbjct: 291 LQELQRTNEKLEHMAATDPLTGAANRRQFIDRVEAEIARAKHNGAPFSLLALDLDHFKII 350 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND++GH GD+V+ + V R+GGEEF ++ A + +R Sbjct: 351 NDSYGHQAGDRVLQRFVTKCRDAIRPFDGVARVGGEEFMVLLPQAALDTARSIGERIRAA 410 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I + G I +T+S G++E E I I+ +AD+ LY AK GRNRVV Sbjct: 411 IAGTPFEADIGQPIEVTVSIGVSEFGRDGETIDAILRKADERLYHAKHQGRNRVVA 466 >gi|218709190|ref|YP_002416811.1| GGDEF family protein [Vibrio splendidus LGP32] gi|218322209|emb|CAV18323.1| GGDEF family protein [Vibrio splendidus LGP32] Length = 431 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 18/166 (10%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDK 153 S+ + D L+G+LN A L ++ KLS+++ DIDYFK +ND +GH +GD Sbjct: 271 SEKAHRDELTGVLNRHAIRDWLKMQSQQVKQGHGKLSMLYLDIDYFKSVNDKYGHLMGDH 330 Query: 154 VIAFLSDQLVV---VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 ++ S +VV + T V R GGEEF + EA A +R ++ SQ Sbjct: 331 ILREFS--MVVGSSISATDKLV-RWGGEEFIVFCPETEAGEAQRKAEKIRLLV--SQHLW 385 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G S +T S GIAE +E ++ I RAD+ALY AK SGRN+V+ Sbjct: 386 IHGDS--LTCSIGIAE-MKQERVTETIARADEALYQAKHSGRNQVI 428 >gi|212633447|ref|YP_002309972.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212554931|gb|ACJ27385.1| GGDEF domain protein [Shewanella piezotolerans WP3] Length = 322 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/162 (36%), Positives = 78/162 (48%), Gaps = 15/162 (9%) Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS+ID L+ L N + + Y ++ ++V DID FK IND +GH GDKVI Sbjct: 155 LSQIDGLTQLYNRRHWQLCMQKEFDRNSRYGDETTLVMLDIDNFKLINDTYGHQAGDKVI 214 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S + GR GGEEF + A A LRK +E S+ + Sbjct: 215 QNVSHLIKKSLRETDCAGRYGGEEFGVVLANTPAANALFFAERLRKKVEQSET-VFDEQI 273 Query: 216 IHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRN 253 I +TIS GI C +P + ADQALY AK+SGRN Sbjct: 274 IKVTISIGI---CDIQPEVLTSEAWLCLADQALYQAKESGRN 312 >gi|119490770|ref|ZP_01623102.1| PleD-like protein [Lyngbya sp. PCC 8106] gi|119453754|gb|EAW34912.1| PleD-like protein [Lyngbya sp. PCC 8106] Length = 1252 Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 12/165 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL + + IV DID+FK+ ND FGH GD+V+ ++ Sbjct: 1089 DALTGLFNRRYLEESLEQEIHRARRNHYSVGIVMIDIDHFKRFNDQFGHDAGDEVLKTVA 1148 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + R GGEE +S + + +R +IE+ Q++ + IT Sbjct: 1149 RLLQGSIRSSDIACRYGGEELTLILPEASLSDTQARSEQIRYMIEHLQLHYENQSLGSIT 1208 Query: 220 ISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 S G+A C H E + ++ AD ALY AK GRNRVVC +DI Sbjct: 1209 ASFGVA--CFPEHGETLEAVLRIADTALYQAKALGRNRVVCATDI 1251 >gi|90406947|ref|ZP_01215138.1| GGDEF family protein [Psychromonas sp. CNPT3] gi|90311989|gb|EAS40083.1| GGDEF family protein [Psychromonas sp. CNPT3] Length = 339 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 6/156 (3%) Query: 107 DCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GLLN AF + L ++ + L ++ DID+FK+ ND +GH +GD+V+ + + Sbjct: 182 DSLTGLLNRYAFDTELSTFLSTKADGLCLILADIDHFKKFNDQWGHLLGDQVLKAVGRKF 241 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITI 220 R GGEEF ++ + A A LR++IE + + SG I +I+ Sbjct: 242 NESMRDGTTAYRFGGEEFVILLPKTNLRLARHFAESLRRLIEKLNLKDKRSGQMIDNISA 301 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+ E E +++ I RAD LY AK+ GRNRV+ Sbjct: 302 SFGVVEFQKGESLTSFIARADTFLYEAKRLGRNRVL 337 >gi|261251755|ref|ZP_05944329.1| hypothetical protein VIA_001776 [Vibrio orientalis CIP 102891] gi|260938628|gb|EEX94616.1| hypothetical protein VIA_001776 [Vibrio orientalis CIP 102891] Length = 588 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 7/160 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +L D ++ L N L + E + + DID+FK++ND+ GH VGD+VI Sbjct: 426 KKLRSKDVMTHLDNKLTLREKLDKHIDKEDVYLAIIDIDHFKRVNDSLGHLVGDQVIIHT 485 Query: 159 SDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +D + F P + V R GGEEF + E +A R ++E S++ P + Sbjct: 486 ADLMKKCFPKPNSLSVARFGGEEFCVLFRANDENDAYEQCEMFRHLVEKSKLVCDDVP-V 544 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S GI + IS + RAD+ALY AK GRN+VV Sbjct: 545 QYTVSIGITLNRDSQHIS--VGRADKALYQAKGLGRNQVV 582 >gi|153824489|ref|ZP_01977156.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-2] gi|149742043|gb|EDM56072.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-2] Length = 642 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ + DID+FK+IND FGH Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 586 HIASLHDQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTTME 637 >gi|56752291|ref|YP_172992.1| hypothetical protein syc2282_c [Synechococcus elongatus PCC 6301] gi|56687250|dbj|BAD80472.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 1037 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGH 148 ++ Q + D L+G+LN FI+ + + LS+V DID+FK IND++GH Sbjct: 859 QKLQQQATTDALTGILNRRQFITLAQAELNRIYRIQRDTSLSLVIIDIDHFKTINDSYGH 918 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+V+ ++ RLGG+EF ++ ++A + + +R+++ + Sbjct: 919 TVGDQVLILWTNICQQNIREVDIFARLGGDEFVLMLPETNGKQAYQVMDRIRQLVIQQSL 978 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ +I ITIS GIA + + + RAD+ALY AK+ GR+R++ Sbjct: 979 HLPQ-QAIAITISVGIAVWTPEILTLDQFLERADRALYQAKQQGRDRIILLD 1029 >gi|325284734|ref|YP_004264197.1| diguanylate cyclase [Deinococcus proteolyticus MRP] gi|324316223|gb|ADY27337.1| diguanylate cyclase [Deinococcus proteolyticus MRP] Length = 369 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 30/239 (12%) Query: 47 NIFLFYIGLTPFYGLEYILVEN---------LSLVIISITISLLLGYISGSILKELFISY 97 IFL + L P GL +++ N L+I+++ L++ + +K I Sbjct: 133 GIFLGLVSLAP-NGLPLVMLPNGMQLLQQVYPPLLILNVAAFLIVALVLRDRIK--LIKL 189 Query: 98 NRISQL-SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 N + Q +R D LSGL N F L + ++ DID+FK+IND +GH VGD+VI Sbjct: 190 NAMFQRQARQDALSGLFNRRQFDLDLLALRTGDLLLMVDIDHFKRINDTYGHAVGDQVIT 249 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKIIENSQINISS 212 + + L R GGEEF +G+ E ++A +R IE + +++ S Sbjct: 250 AVGELLRSNLRASDSAYRYGGEEFVLLVHQPQIGTPE----LIAERIRDHIEQTPLSVPS 305 Query: 213 ------GP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 P ++H+T S G A + ADQALY AK+ GRNR V + + Sbjct: 306 LNGLQGDPATFTLHLTASLGGARHMAGTDPQHTLALADQALYQAKQGGRNRWVLHPEPQ 364 >gi|320156603|ref|YP_004188982.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] gi|319931915|gb|ADV86779.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] Length = 443 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 26/169 (15%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G +N A + L E+LS+++ D+D FK++ND +GH +GD Sbjct: 273 AELAHRDALTGAMNRHAVRTWLEKKARTVRWGQEQLSVLYLDLDKFKRVNDRYGHQMGDD 332 Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 ++ + V+V + + G R GGEEF ++ Q+A A +RK N Sbjct: 333 ILR----EFVLVVASSLEEGERLVRWGGEEFIVFLPETTLQQAVEKAEMIRK-------N 381 Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S+ +H +T S G+A+ +E ++ + RAD ALY AK GRNRV Sbjct: 382 VSNHLWVHGGMLTCSIGVAQ-MQEERVTEFLARADDALYQAKHRGRNRV 429 >gi|302186094|ref|ZP_07262767.1| GGDEF [Pseudomonas syringae pv. syringae 642] Length = 533 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 115/255 (45%), Gaps = 29/255 (11%) Query: 23 SPHTFMIYFSIF-----FSIFIATVIF---IANIFLFYIGLTPFYGLEYILVENLSLVII 74 +PH Y FSIF+ V + + ++ + +GL Y ++ E V+ Sbjct: 6 TPHMVRKYLYTLLWFYVFSIFLFAVAWEFELESVAMAAMGLP--YDQDFESAERWRFVLT 63 Query: 75 SI---TISLLLGYIS-GSILKELFISYNRI-------SQLSRIDCLSGLLN----HSAFI 119 S +S+++ +I +++ L SYN + L+R D LSGLLN H + Sbjct: 64 STGFAVLSMIVPFILLKRLMQRLHRSYNDLLESQALSESLARHDPLSGLLNRRVFHEQLV 123 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178 + L + ++ D+D FK IND GH GD I +++ L G V RLGG+ Sbjct: 124 ARLQQPATQTAVFLIDLDKFKLINDTHGHAAGDAAICAVAESLRDATVGWQASVARLGGD 183 Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 EF A G S E A LA + I S + + G + T+ A IA +P ++ Sbjct: 184 EFGLAVSGDFSHAELAPLAESILAKIAASSVGL-PGVAFSATLGAAIAPMDSSDP-DILL 241 Query: 238 YRADQALYVAKKSGR 252 RAD A+Y K GR Sbjct: 242 QRADSAMYRGKTGGR 256 >gi|153828167|ref|ZP_01980834.1| GGDEF family protein [Vibrio cholerae 623-39] gi|148876409|gb|EDL74544.1| GGDEF family protein [Vibrio cholerae 623-39] Length = 489 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%) Query: 76 ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSI 131 + ++L+ +++G +L L ++R +QL+ D ++GLLN S L +++ L+I Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190 DID FKQIND +GH +GD+VI ++ +Q+ + V R GGEEF EQ Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248 I+ + S + + G T+S GI E + AD+ LYVAK Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480 Query: 249 KSGRNRVV 256 SG+N++V Sbjct: 481 TSGKNQLV 488 >gi|123443561|ref|YP_001007534.1| hypothetical protein YE3362 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090522|emb|CAL13391.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 414 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 Y + S++ D+D+FK IND GH GD+V+ FL+ L + V R GGEEF Sbjct: 285 YGQNFSLILLDVDHFKNINDQLGHHKGDEVLIFLARTLESIIRECDIVFRWGGEEFTILL 344 Query: 185 LGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 ++ + A LA +R+ I+ Q N+ +T+S G+A+ E ++ R D+A Sbjct: 345 PSTNLKGALQLAESIRETIQMICQPNLP-----QLTVSIGVAQHQVGEDTDSLFKRMDEA 399 Query: 244 LYVAKKSGRNRVVC 257 LY AK SGRNRV+ Sbjct: 400 LYRAKASGRNRVLA 413 >gi|73538785|ref|YP_299152.1| GGDEF [Ralstonia eutropha JMP134] gi|72122122|gb|AAZ64308.1| GGDEF [Ralstonia eutropha JMP134] Length = 413 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 18/190 (9%) Query: 78 ISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129 I++LLG +++ E I+ N +R+D L+GLLN A ++ + L Sbjct: 201 IAVLLGLFGFTVMAMEQIIANNESG--ARVDALTGLLNRGALDMSALSLVARWQRDGQSL 258 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S + DID+FKQ+ND FGH GD V+ ++ L GR GGEEF + E Sbjct: 259 SCLVIDIDHFKQVNDTFGHHAGDAVLREVAQALDNSRRASDVAGRYGGEEFCILCPHTDE 318 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-----ADQAL 244 +A LAN +I+ + G ++S G+A+ +++R AD+AL Sbjct: 319 HQATALAN---RILRKVRAIPLPGKECFASVSIGVAQLHGATGSKELLWRTLFADADRAL 375 Query: 245 YVAKKSGRNR 254 Y AK+ GR+R Sbjct: 376 YQAKQQGRDR 385 >gi|114562205|ref|YP_749718.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina NCIMB 400] gi|114333498|gb|ABI70880.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina NCIMB 400] Length = 1276 Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 67/209 (32%), Positives = 106/209 (50%), Gaps = 24/209 (11%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 Y L+ + +++I+ I +L G +KEL S+ + D L+GL N F L Sbjct: 806 YALIASGTIIIL---IMILFGLSRIKQMKEL-------SRRANFDSLTGLANRFHFNQQL 855 Query: 123 G-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 YN ++VF D+D+FK++ND+ GH VGD++I + +L + RLGG Sbjct: 856 SLLMSNPYNTA-AVVFIDLDHFKEVNDSMGHDVGDELIIQVGKRLQHCLSQQDVLARLGG 914 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---ITISAGIAERCHKE--- 231 +EF A + EQ AA + DL IIE + ++ G I+ + SA I C + Sbjct: 915 DEF--ALIIPYEQVAADVNRDLVNIIERVRQTLNKGYQINQYWLNSSASIGVACFPDDGK 972 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSD 260 T++ AD A+Y AK++GRN F++ Sbjct: 973 DAKTLLKHADTAMYAAKQNGRNGSYFFNE 1001 >gi|326796818|ref|YP_004314638.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326547582|gb|ADZ92802.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 364 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 10/162 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+ ++ D L+GL N + S+ E S+ DID FK INDNFGH GD V+ Sbjct: 207 RLKDMAERDPLTGLQNRLVLEKEIRSHIQSEEPFSLALIDIDRFKAINDNFGHNYGDHVL 266 Query: 156 AFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 S+ L + +G R GGEEF G+ + L ++ + N+ GP Sbjct: 267 CAFSELLKDTAKSYAGLGIRQGGEEFILFISGTIDPTFNATVELLNRL---ASANLEHGP 323 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I+ SAG+ E +E T++ RAD +Y AK+ GRNRV+ Sbjct: 324 ---ISFSAGVVEWDDREDQITLLKRADDLMYAAKEQGRNRVL 362 >gi|315181222|gb|ADT88136.1| sensory box/ggdef family protein [Vibrio furnissii NCTC 11218] Length = 606 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 21/173 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGH 148 N++ +LS D L+ L N F L + +N +V DID+FK+IND GH Sbjct: 439 NQLRELSEKDSLTHLWNRRKFEQELQTQTQLVERYAHNHDACLVLIDIDFFKRINDEQGH 498 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+VI ++ L + F+ R+GGEEFA ++ EA + + LR + Q Sbjct: 499 DQGDRVIIQVAQILTHQLRSTDFIARIGGEEFAVIMPHTAIDEAHRVVDRLRAAVAIDQ- 557 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259 S+ +TISAG+ + S Y+ AD ALY +K GRNRV VC S Sbjct: 558 ------SLTVTISAGVTDLTFDSNRS---YKCADIALYESKTLGRNRVSVCHS 601 >gi|331647549|ref|ZP_08348641.1| cellulose synthesis regulatory protein [Escherichia coli M605] gi|330911761|gb|EGH40271.1| hypothetical protein ECAA86_02120 [Escherichia coli AA86] gi|331043273|gb|EGI15411.1| cellulose synthesis regulatory protein [Escherichia coli M605] Length = 558 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 9/185 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132 LL Y+ ++ +++ + + + D L+ L N A ++ S++ Sbjct: 368 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCQTHQHPFSVI 427 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK IND FGH VGD+V++ + + GR+GGEEF G++ +A Sbjct: 428 QVDLDHFKAINDRFGHQVGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANLTQA 487 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250 A +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+AK++ Sbjct: 488 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 547 Query: 251 GRNRV 255 GRNRV Sbjct: 548 GRNRV 552 >gi|288871273|ref|ZP_06117056.2| sensory box/response regulator [Clostridium hathewayi DSM 13479] gi|288864046|gb|EFC96344.1| sensory box/response regulator [Clostridium hathewayi DSM 13479] Length = 363 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 13/178 (7%) Query: 90 LKELFISYNRISQL---SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIN 143 L ++ R QL S D L+G+ N +AF + + S+ DID FK +N Sbjct: 192 LDDISKQKEREEQLLFQSTRDGLTGIYNKTAFEYMMEETLKRGSRGSLYMIDIDNFKDVN 251 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKI 202 D +GHP GD+++ + L +F +GR+GG+EF + G ++ +A L N Sbjct: 252 DQYGHPAGDRILVKTGELLREIFRDSDLIGRVGGDEFVVYSESGDTKMKALRLLNGTADF 311 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ IS SI I S G + ++E S RADQA+Y AK+ G+NR+ + + Sbjct: 312 SKEGELRISV--SIGIASSTGNPDEEYQELFS----RADQAMYRAKQEGKNRIAWYEE 363 >gi|281179017|dbj|BAI55347.1| conserved hypothetical protein [Escherichia coli SE15] Length = 569 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 9/185 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132 LL Y+ ++ +++ + + + D L+ L N A ++ S++ Sbjct: 379 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCQTHQHPFSVI 438 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK IND FGH VGD+V++ + + GR+GGEEF G++ +A Sbjct: 439 QVDLDHFKAINDRFGHQVGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANLTQA 498 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250 A +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+AK++ Sbjct: 499 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 558 Query: 251 GRNRV 255 GRNRV Sbjct: 559 GRNRV 563 >gi|218676573|ref|YP_002395392.1| Similar to sensory box/GGDEF family protein [Vibrio splendidus LGP32] gi|218324841|emb|CAV26570.1| Similar to sensory box/GGDEF family protein [Vibrio splendidus LGP32] Length = 634 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 83/175 (47%), Gaps = 20/175 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSY--NEKLSIVFFDIDYFKQINDNFGH 148 N++ LS D LSG N F S + Y E+ + DID+FK+IND FGH Sbjct: 465 NKLRNLSEKDALSGCWNRRKFDLELRDECSRVSRYPTREQSCLAILDIDHFKRINDRFGH 524 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDK I ++ L FV R+GGEEF ++ +EA + N LR I Sbjct: 525 DYGDKAIQIVAQVLQRECRDTDFVARIGGEEFGVILPHTTPKEADYVLNRLRIAISIEFD 584 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIE 262 N+ +TIS GI EP + Y+ AD ALY AK GRN V F D E Sbjct: 585 NV-------VTISGGIT-NLTSEP--ALNYKCADLALYEAKAVGRNNVCLFLDSE 629 >gi|197119468|ref|YP_002139895.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] gi|197088828|gb|ACH40099.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] Length = 458 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 YN L ID L+GL N+ + Y LS++F DID FK +ND FGH Sbjct: 282 YNFAKDLLYIDELTGLYNYRYLDVVLERELKRSERYGSNLSVLFLDIDLFKSVNDTFGHL 341 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +G +V+ + L V R GG+E+ + + AAI+A +RK++E + Sbjct: 342 IGSRVLREIGSLLRKSVRDVDAVIRYGGDEYTIVLVETGLDGAAIVAERIRKMVEAHTFS 401 Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNR 254 + G SI +T+S G A C + ST ++ ADQA+Y K +G+N+ Sbjct: 402 KADGLSIKLTVSLGYA--CSPDDASTKTELLEMADQAMYRGKAAGKNK 447 >gi|86147225|ref|ZP_01065540.1| hypothetical protein MED222_17708 [Vibrio sp. MED222] gi|85834940|gb|EAQ53083.1| hypothetical protein MED222_17708 [Vibrio sp. MED222] Length = 471 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 19/202 (9%) Query: 69 LSLVIISITISLLLGYISGSILKELFIS--YNRISQLSRIDCLSGLLNHSAFISSLGSYN 126 L L + + I L L +IS L + + R+ L+ +D L+GL N F + L + N Sbjct: 269 LELERVQLLILLALYFISALWLWRFYTKQEHKRLKNLAMLDPLTGLYNRRGFEARLLNQN 328 Query: 127 EK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 E+ + + FDID FK +ND +GH VGD+VI ++ ++ V R GGEEF A Sbjct: 329 EEPIIGVGVFDIDDFKVVNDQYGHKVGDEVICHVAQLMLNSVRQKDIVARFGGEEFVVAI 388 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG-----------IAERCHKEPI 233 G S + + + ++ I ++G I+I++S G I + I Sbjct: 389 TGESSELLSSIFERIQNDISLQSYRCATGDKINISVSGGATLYSLFKFDSIGHLWENQSI 448 Query: 234 STIIYRADQALYVAKKSGRNRV 255 + +D+ LY AK +G+N+V Sbjct: 449 RS----SDEQLYKAKAAGKNQV 466 >gi|296131952|ref|YP_003639199.1| diguanylate cyclase [Thermincola sp. JR] gi|296030530|gb|ADG81298.1| diguanylate cyclase [Thermincola potens JR] Length = 222 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 21/220 (9%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97 F ++ A +FL I F+ Y L + L + I ++ I G ++K Sbjct: 8 FAPAILLSAGLFLLTI---TFFADRYYLGQQGYLWLPMAIIQTVISTICGILIK------ 58 Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+++ + D L+GL N F + L K +S++ D+D FK IND +GH VGD+V+ Sbjct: 59 -RLNREANTDALTGLHNRKYFYTKLSELKTKGPISLLLIDLDDFKSINDTYGHIVGDQVL 117 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---SQINISS 212 ++ L + R GGEEFA + QEA +A+ +R +EN S NI+ Sbjct: 118 QQFAEILRRNTRKDDVIARWGGEEFAVILPQTDTQEAIKVASRIRTAVENHLFSYENITC 177 Query: 213 GPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKS 250 IT+S GI K I + AD+ALY AK+ Sbjct: 178 ----RITVSVGITSTREKADTGIEQFVKVADEALYRAKEK 213 >gi|145589357|ref|YP_001155954.1| diguanylate cyclase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047763|gb|ABP34390.1| diguanylate cyclase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 274 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N ++ + DID+FK++ND +GHP GD V+ L+ GR+GGEEF Sbjct: 132 NIPVAFLMLDIDHFKKVNDQYGHPAGDLVLQSLTKYCQGELRVVDIFGRVGGEEFLIVLP 191 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--------ERCHKEPISTII 237 SSE A +A LRK I +S + G + IT+S GIA E K +++ Sbjct: 192 ESSEALAFDVAERLRKKIASSVAVVVDGHEVFITVSIGIAIFDPVLNGEIRPKVILNSGY 251 Query: 238 YRADQALYVAKKSGRNRVVCFS 259 RAD+ALY+AK +GRNR +S Sbjct: 252 KRADEALYLAKSNGRNRTESWS 273 >gi|254448481|ref|ZP_05061941.1| diguanylate cyclase [gamma proteobacterium HTCC5015] gi|198261864|gb|EDY86149.1| diguanylate cyclase [gamma proteobacterium HTCC5015] Length = 595 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 11/168 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 ++ +LS D L+GL N + L ++ LS + DID FK ND GH V Sbjct: 416 EKLEKLSNTDSLTGLNNRRSLDELLAMEVKRTCRTGAPLSAMMMDIDRFKAFNDTHGHQV 475 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + ++ + P VGR GGEEF + A I+A +R +EN Sbjct: 476 GDACLKAVAGVIASTAQRPSDVVGRYGGEEFCVLLPDTPLDGAQIIAERIRAAVENLDFT 535 Query: 210 ISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + SG + +TIS G++E C + ++ AD+ALY AK +GRN V Sbjct: 536 V-SGQRVPVTISIGVSELTYCASDSGKALVEAADEALYSAKSAGRNCV 582 >gi|145297797|ref|YP_001140638.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850569|gb|ABO88890.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 626 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 15/170 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHP 149 ++ QL+ D L+G+ N I + G + L ++ DID+FKQ+ND GH Sbjct: 458 RKLRQLAMTDELTGIHNRRQ-IQAKGEVLFRQARDNGKPLCVLILDIDHFKQVNDTLGHH 516 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD+V+ ++ + VGR GGEEF + +EA +A +R E S+++ Sbjct: 517 MGDRVLTAVASCIGAQMRHLDRVGRHGGEEFLVLLPDTRMEEALEVAERIRH--EVSRLH 574 Query: 210 ISSGPSIH-ITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256 I P H + +S G AE C E + +I RAD+A+Y AK++GRN+V+ Sbjct: 575 IEEMPEGHPVHVSIGCAE-CSLLDESLGDLIKRADEAMYRAKQAGRNQVM 623 >gi|89902139|ref|YP_524610.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89346876|gb|ABD71079.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 860 Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I +L+ D L+ L N S +S E L+++F D+D+FK IND GH VGD Sbjct: 431 IQKLAYFDALTSLPNRSLLNDRIRHALSEADRRQESLALMFLDLDHFKNINDTLGHGVGD 490 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ L+ ++ V V RLGG+EF + + AA +A +K+++ + + Sbjct: 491 QLLVALAARMQSVVREQDTVARLGGDEFILLLPDTGSKGAARVA---QKLLQTISLPVQI 547 Query: 213 GP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 GP + +T S GIA+ + + T+ RAD A+Y AK+SGRN Sbjct: 548 GPHELTVTPSMGIAQYPRDGDDLETLSRRADIAMYRAKQSGRN 590 >gi|326626235|gb|EGE32580.1| Putative membrane protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 304 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 22/276 (7%) Query: 8 FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58 F IW H + + F + S+ +FI ++ F ANI F + L P Sbjct: 28 FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 87 Query: 59 ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112 GL + + L +V I+I + Y + ++ +L ++ LS +D L+GL Sbjct: 88 NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 147 Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 N + L + S ++ DID+FK ND++GH +GD+ + +S + + Sbjct: 148 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 207 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226 V R GGEEF + Q+A A +R+ + + +I S+ ++T+S GIA Sbjct: 208 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 267 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + I I +AD+ALY AK GRN ++ D+ Sbjct: 268 LTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 302 >gi|187923126|ref|YP_001894768.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] gi|187714320|gb|ACD15544.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] Length = 563 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 86/183 (46%), Gaps = 27/183 (14%) Query: 90 LKELFISYNRI-SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141 L E S N + S +R D L+G L+ F+ L + NE L + D+D+FKQ Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIERAHAGNEPLCMAIADLDHFKQ 431 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-- 199 IND FGH GD+ + D +GRLGGEEF + A DL Sbjct: 432 INDRFGHAAGDRALEHFVDTCRAELRGADAIGRLGGEEFG----------LLLPATDLAG 481 Query: 200 -RKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 +++E ++ + + P S+ +++S GI E + I+ RAD ALY AK GR Sbjct: 482 GHEVVERLRLRLKAMPSPKLPASVGLSVSIGITELSPDDLPERIMSRADMALYAAKSGGR 541 Query: 253 NRV 255 +R Sbjct: 542 DRT 544 >gi|293396625|ref|ZP_06640901.1| cellulose synthesis regulatory protein [Serratia odorifera DSM 4582] gi|291420889|gb|EFE94142.1| cellulose synthesis regulatory protein [Serratia odorifera DSM 4582] Length = 561 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 13/161 (8%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N AF + + N S++ D+D+FK +ND +GH GD+ +A + Sbjct: 394 DTLTRLYNRGAFFEKAYAIVEKCRAINRPYSVIQIDLDHFKFVNDCYGHLTGDRTLATTA 453 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ VGR+GGEEF G+++ A+ +A +R +E + I I +T Sbjct: 454 RLVLGAVRQHDVVGRVGGEEFCVILPGTTKSVASQIAERIRASLEGAMILTDDNLPIGVT 513 Query: 220 ISAGIAERCHKEPISTIIYR----ADQALYVAKKSGRNRVV 256 S G+A C E ST + AD+ LY AKK+GRN+V+ Sbjct: 514 ASLGVA--CADEDGSTALNDLRMIADRRLYTAKKNGRNQVI 552 >gi|71908493|ref|YP_286080.1| GGDEF [Dechloromonas aromatica RCB] gi|71848114|gb|AAZ47610.1| GGDEF protein [Dechloromonas aromatica RCB] Length = 410 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 10/173 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL + I +LS ID L+G N F + Y L+++F DID+FK+IND Sbjct: 237 ELESALAAIHRLSTIDPLTGCFNRRLFNERIQEELDRAIRYQRALAVIFCDIDHFKRIND 296 Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH +GD+V+ ++ + G +V R GGEEF +S A A LR + Sbjct: 297 TCGHLLGDQVLQEAAECFRRELRGHIDWVARYGGEEFVIVLPETSLPAAIATAERLRLAL 356 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S + + P + +T S G+ + E + ++ RAD LY AK +GRN+ + Sbjct: 357 TESMVALL--PGLTVTASFGVTQHVPGETVQELLQRADNQLYAAKAAGRNQTL 407 >gi|37680252|ref|NP_934861.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|37198999|dbj|BAC94832.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 439 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 14/183 (7%) Query: 78 ISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIV 132 I LLL G+ L +L + ++ ++S +D LSGL N+ F++ + E V Sbjct: 262 IPLLLAITVGACYYLYKLNKAQKKLKEISYLDPLSGL-NNRHFLAEVEKQQLPLEHYYAV 320 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK +ND +GH +GD+VI ++ + + R+GGEEF S EA Sbjct: 321 MLDIDHFKSVNDRYGHDIGDQVIRRVAKVVKSRIRVSDYAFRIGGEEFLLLVKTPSSNEA 380 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 + +R+ +E N++ P H+T+S G + + I AD LY AK++GR Sbjct: 381 RQVCERIRQDVE----NMTQAP--HVTVSIGFT--ALQTQLDETIRIADSHLYDAKRNGR 432 Query: 253 NRV 255 NRV Sbjct: 433 NRV 435 >gi|84387083|ref|ZP_00990105.1| GGDEF family protein [Vibrio splendidus 12B01] gi|84377944|gb|EAP94805.1| GGDEF family protein [Vibrio splendidus 12B01] Length = 486 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 16/196 (8%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLGS- 124 I+ TISLLL YI ++E Y I + L+ D L+ + N AF LG Sbjct: 292 IVGTTISLLLAYIVNLQIREKERLYRMIDERTEELRFLANHDSLTEIYNRRAFNKMLGQS 351 Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 ++ S++ FD+D FK+IND FGHP GD ++ + + V + + R+GG+EF Sbjct: 352 IQRDKPFSLIVFDVDKFKEINDKFGHPAGDALLIHVIKVISVSLKSGDNLFRMGGDEF-- 409 Query: 183 AALGSSEQEAAILANDLRKIIEN-SQINIS-SGPSIHITISAGIAERCHKEPISTIIYRA 240 + SS E L+ L I+E S+ + SG + T+S G R + E I ++ + Sbjct: 410 -GIISSITEHDSLSRYLECILETVSESHCEHSGQLLSCTLSIGATIRTN-EDIEALLQKT 467 Query: 241 DQALYVAKKSGRNRVV 256 D LY++K +GRNRV Sbjct: 468 DSMLYLSKSNGRNRVT 483 >gi|113968797|ref|YP_732590.1| diguanylate cyclase with GAF sensor [Shewanella sp. MR-4] gi|113883481|gb|ABI37533.1| diguanylate cyclase with GAF sensor [Shewanella sp. MR-4] Length = 345 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 19/180 (10%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFF---DIDYFKQINDN 145 L + + L+ D L+G N F + ++ +++EK + +F DID+FK +ND Sbjct: 170 LRLQLKELEYLASTDHLTGAGNRRVFTQKILQAIETFHEKGQLFYFGLLDIDHFKMLNDQ 229 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAAILANDLR 200 FGH GD V+ Q +V M R+GGEEFA +E E ND+R Sbjct: 230 FGHTAGDYVL-----QKIVAISEAMMTSSAELFRIGGEEFAIIFPEQTEYEPMQFFNDIR 284 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 + I + ++ P I +++S G + +++ R+D+ALY AK +GRNRVV F+ Sbjct: 285 EAIAKAALDFDGIP-ISVSVSIGFTTMSTADYAPESLLRRSDKALYQAKLAGRNRVVMFN 343 >gi|332992852|gb|AEF02907.1| GGDEF/GAF domain-containing protein [Alteromonas sp. SN2] Length = 496 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 11/176 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 +EL + ++++L+ ID L+G+ N F +L E+ LS++F D+D+FK N Sbjct: 310 QELIEANAKLAKLANIDGLTGIANRRLFDDTLQRDIERSVLSKTPLSLLFIDVDHFKNYN 369 Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD + +++ + G V R GGEEFA ++ A +A +R+ Sbjct: 370 DCYGHVAGDDALISVAEIIKKTCIGNDDAVARYGGEEFAVIMPSTNLSAALKVAERIRRN 429 Query: 203 IENSQINIS-SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255 IE + I S + +T S G+A P+ + I +AD ALY+AK GRNRV Sbjct: 430 IEQAAIPFKLSAYNNRLTASLGVATMAFDHPVCPNEFIKQADAALYLAKSLGRNRV 485 >gi|229157628|ref|ZP_04285703.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 4342] gi|228625585|gb|EEK82337.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 4342] Length = 430 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + NE ++++ FDID FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF ++E+EA +A LR IE Q Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTAEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 425 >gi|222149457|ref|YP_002550414.1| GGDEF family protein [Agrobacterium vitis S4] gi|221736440|gb|ACM37403.1| GGDEF family protein [Agrobacterium vitis S4] Length = 626 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 19/212 (8%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 LE ++ S I S +++ S +L+E + +L+ D L+ L N F Sbjct: 415 LETVITRVRSFDISSGMVAVTRDVTSQRLLQE------ELDRLANTDELTQLSNKRHFNR 468 Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMF 171 L S + + LS++ D+D FK ND +GH GD + +S ++ GT + Sbjct: 469 QLKSLSAEARMVGTPLSLLVVDVDKFKLFNDTYGHLPGDNCLRKISTEIAAAIRPGTDL- 527 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAER--C 228 R GGEE G + +A + ++R+ I +I + + P H+T+S G+AE+ Sbjct: 528 AARYGGEEIVILLPGKTASQAHQVGEEIRQRIAALEIIHQKNLPWGHVTVSIGVAEQSPA 587 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 H E + +AD+ LY AK SGRN+VV F + Sbjct: 588 HDETDEALFVKADKCLYTAKNSGRNKVVSFDE 619 >gi|209552386|ref|YP_002284301.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539498|gb|ACI59430.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 546 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 83/160 (51%), Gaps = 15/160 (9%) Query: 106 IDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA----FL 158 +D L+GL N S L S SI D+D+FK +NDNF H +GD+V++ L Sbjct: 394 LDALTGLYNRKYLDSRFKELTSEKRPYSIAMLDVDHFKSVNDNFSHMIGDQVLSAIGTIL 453 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIH 217 +QL + T + R GGEEF L + + AA + LR +E Q N S + Sbjct: 454 RNQLRI---TDQAI-RFGGEEF-VVLLAGTPRGAADVCERLRTAVE--QWNWSEICNGLR 506 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +TIS G+A + I+ ADQ LY AKK+GRNRVV Sbjct: 507 VTISIGVANTLSASAPNEILAIADQNLYTAKKTGRNRVVA 546 >gi|163783656|ref|ZP_02178644.1| hypothetical protein HG1285_12732 [Hydrogenivirga sp. 128-5-R1-1] gi|159881061|gb|EDP74577.1| hypothetical protein HG1285_12732 [Hydrogenivirga sp. 128-5-R1-1] Length = 336 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 99/188 (52%), Gaps = 14/188 (7%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFF 134 L +I I+KE + R+ + + ID L+GL N + I+ Y +S++ F Sbjct: 150 LAFIFSFIVKEE-LEKKRLLEKAIIDHLTGLYNRFYLEEAGAREIARAKRYGFPISLIMF 208 Query: 135 DIDYFKQINDNFGHPVGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D FKQ+ND +GH VGD+V + F S V T M V R GGEEF + +EA Sbjct: 209 DLDNFKQVNDTYGHQVGDRVLVKFASIVSSNVRSTDMPV-RYGGEEFVVLLPHTYPEEAV 267 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSG 251 +A +R+ E G + +T+SAGI+ C+ S +I AD+A+Y AK+ G Sbjct: 268 KVAERIREEFEKFLFRF-EGEVMRLTVSAGIS-FCNSGECSLGELIQMADKAMYEAKEKG 325 Query: 252 RNRVVCFS 259 +NR+ FS Sbjct: 326 KNRIEVFS 333 >gi|158336078|ref|YP_001517252.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158306319|gb|ABW27936.1| diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] Length = 126 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 4/129 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +++ DID+FK IND FGH GD+V+ +S L V R+GGEEF GS Sbjct: 1 MTLASLDIDHFKAINDAFGHATGDQVLRDISGLLKERLRRVDQVFRIGGEEFLLLFYGSD 60 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 + ++A +LR +I SQ + P +T+S G+A KE +T + R+D LY AK Sbjct: 61 TESGYLVAEELRHLI-GSQPFL---PDHSVTVSIGVATLHPKEDWTTWMQRSDDYLYRAK 116 Query: 249 KSGRNRVVC 257 +GRN+V+C Sbjct: 117 SAGRNQVMC 125 >gi|313496937|gb|ADR58303.1| Response regulator receiver modulated diguanylate cyclase [Pseudomonas putida BIRD-1] Length = 451 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 82/158 (51%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + LS DID+FK+IND GHP+GD+VI L+ Sbjct: 292 DSLTGLYNHTHILQLLEDCSFRARREQQPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 351 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 L F+GR GGEEFA ++ A + +++R+ ++I + P + Sbjct: 352 LFLKQRLRKTDFIGRYGGEEFAIVMPNTALDAAHKVLDEIRRRF--AEILYPAQPRDLQC 409 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T SAG+ + T+ AD+ALY AK +GRN VV Sbjct: 410 TFSAGVVQLDEGLDALTMASAADEALYRAKHAGRNCVV 447 >gi|222149526|ref|YP_002550483.1| GGDEF family protein [Agrobacterium vitis S4] gi|221736508|gb|ACM37471.1| GGDEF family protein [Agrobacterium vitis S4] Length = 909 Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 10/162 (6%) Query: 107 DCLSGLLN------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N H A I L + ++++ D+D FK+IND GH GD ++ + Sbjct: 480 DPLTGLANRRFLDRHLAEIEDLRGNGKSVALLHIDLDRFKEINDTLGHAAGDAMLRHAAS 539 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPSIHIT 219 Q+ F R+GG+EF S Q AA IL L I N I+ G ++ Sbjct: 540 QINAHMSPGDFAARIGGDEFVVVKHDESSQAAARILGETLIDAI-NQPIHW-EGQECRVS 597 Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 S GIA+ C+ P + + AD ALY AK+ G+NR+ FSD Sbjct: 598 ASIGIAQSCNNHPHLEQALINADIALYEAKRRGKNRLEFFSD 639 >gi|218962106|ref|YP_001741881.1| hypothetical protein CLOAM1846 [Candidatus Cloacamonas acidaminovorans] gi|167730763|emb|CAO81675.1| hypothetical protein CLOAM1846 [Candidatus Cloacamonas acidaminovorans] Length = 578 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 88/180 (48%), Gaps = 24/180 (13%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y ++ +LS D L+GL N +L +N + DID+FK +NDN+GH Sbjct: 396 YEKVGELSLTDSLTGLRNRRYLEGNLFQMVILAARHNVPVCFSMIDIDFFKLVNDNYGHL 455 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE----- 204 GD V+ L+ L F V R GG+EF S ++ + + DLR+ IE Sbjct: 456 AGDFVLKELARILNSEFRKSDVVIRYGGDEFLVILFDSDQRLSYSIMEDLRQKIEAYSFD 515 Query: 205 -NSQINISSGPSIHITISAGIAERCH--KEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259 N+QI I TIS GIA H +P ++ I ADQA YVAK +GRNRV + Sbjct: 516 YNNQI-------ITFTISIGIACDFHISSQPKNLAKCIACADQACYVAKTNGRNRVELYQ 568 >gi|330967757|gb|EGH68017.1| GGDEF domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 355 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 21/237 (8%) Query: 27 FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE-----YILVENLSLVIISITISLL 81 +I S ++ +F++ L +I L+P G++ Y+ + + + SI + ++ Sbjct: 103 MIILCSTLLVVYTRDYLFVS--VLSWIILSPAQGIDTDSAAYVFM--MLFFVSSIALGVV 158 Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDY 138 L + + L+++ +R +LS D L+ +LN A + +L + N + DID Sbjct: 159 LNHTNTRTLRKVLTLESRFRELSLTDDLTDILNRRALMLALDEHVANNSGSYFLMLDIDN 218 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK IND FGH GD+V+ ++ L G+ F GR+GGEEF S E A Sbjct: 219 FKTINDQFGHDAGDEVLRLMASCLQQTPGSLAF-GRMGGEEFGVILPVSGEPVACDYVLR 277 Query: 199 LRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L I S P++ +T SAG+A+ S ++ AD +Y AK+ G++R Sbjct: 278 LLDTIRRS-------PTVSPLTCSAGLADIDANSTSSQVLKTADVNMYQAKREGKDR 327 >gi|320105448|ref|YP_004181038.1| diguanylate cyclase with beta propeller sensor [Terriglobus saanensis SP1PR4] gi|319923969|gb|ADV81044.1| diguanylate cyclase with beta propeller sensor [Terriglobus saanensis SP1PR4] Length = 1050 Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 8/169 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 +L ++ + ++QL+ D L+ L N FI+ L + + S++ DID+FK +ND Sbjct: 867 KLQVANSLLNQLASRDSLTNLFNRRHFIALLDTELARSKRTAQTFSLLLLDIDHFKSVND 926 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD VI ++ ++ + R GGEE+ ++ +A LA + I Sbjct: 927 TYGHLAGDTVIQTIAARISTSLRATDTLARFGGEEYIVLLPNTAVPQATALALRILSAIA 986 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ I I G I+ ++S G AE K + ++ RAD ALY AK+ GRN Sbjct: 987 STPIEI-EGFLINASVSIGCAEADIKGTTTMLLERADLALYAAKRGGRN 1034 >gi|193216167|ref|YP_001997366.1| diguanylate cyclase [Chloroherpeton thalassium ATCC 35110] gi|193089644|gb|ACF14919.1| diguanylate cyclase [Chloroherpeton thalassium ATCC 35110] Length = 437 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 109/249 (43%), Gaps = 18/249 (7%) Query: 23 SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82 P + YF + ++A ++ I L + EY + EN+ I LL Sbjct: 194 DPAKSLEYFEAYHKFYLAFDAELSVSKPLEIVLDTCHSKEYHISENVQRAYEEIKKYNLL 253 Query: 83 GYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAFISSLG-------SYNEKLSIV 132 K + RI L R D L+GL N L Y L++V Sbjct: 254 YAELSQQCKLVEEHKERIKTLERQIREDSLTGLQNRRYLDLQLSLEFERARRYGNNLTLV 313 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FKQIND F H +GDKV+ ++ + R GGEEF + + A Sbjct: 314 MADIDHFKQINDRFSHLIGDKVLKEIAKIFRRRCRRIDIIARYGGEEFVLLLPMTDAENA 373 Query: 193 AILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 ++ +R IEN S+I+ P + +TIS GI++ E ++ AD+ LY AK Sbjct: 374 YMVCERIRVAIENYHWSKIH----PELSVTISMGISDSLGIENNHDLLAAADKKLYEAKN 429 Query: 250 SGRNRVVCF 258 SGRNR VC+ Sbjct: 430 SGRNR-VCY 437 >gi|87307282|ref|ZP_01089427.1| hypothetical protein DSM3645_17205 [Blastopirellula marina DSM 3645] gi|87290022|gb|EAQ81911.1| hypothetical protein DSM3645_17205 [Blastopirellula marina DSM 3645] Length = 336 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 16/157 (10%) Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 SR D L+GL N A SL Y+ ++ FD+D+FK++ND GH GD+V+ Sbjct: 131 SRTDPLTGLSNRRALDDSLENMIGMKSRYDFTFTLCIFDVDHFKRVNDQHGHLHGDRVLV 190 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +S+ + V R GGEEF + A I A LR S+ + Sbjct: 191 EVSNLIDNCVRETDIVTRYGGEEFVVLMPSTDVYGACIFAERLR---------TSAEAQL 241 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +TIS G+A+ ++ T++ RAD ALY AK +GRN Sbjct: 242 GVTISGGLAQVRREDEARTLLARADAALYRAKANGRN 278 >gi|330861522|emb|CBX71732.1| hypothetical protein YEW_BX08280 [Yersinia enterocolitica W22703] Length = 439 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144 K L + ++ + D L+GL N + F L NE ++++F D D FK+IND Sbjct: 237 KHLTQENDSLAHRAAHDSLTGLANRAYFEGRLSRTLSDCKTNEHVAVLFLDGDRFKEIND 296 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKI 202 N+GH GD V+ ++D+L + V RLGG+EFA A + +++ + I+AN++ K Sbjct: 297 NYGHAAGDVVLTTIADRLRALLRESDLVARLGGDEFAILLAPIYNTD-DVLIIANNIIKS 355 Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252 + I + G I ++S G+A H + ++ RAD+A+Y AKK R Sbjct: 356 M-TQPITLPDGSEIITSLSIGVAIYPDHAQTPDELLQRADEAMYQAKKGFR 405 >gi|326424077|ref|NP_761617.2| GGDEF family protein [Vibrio vulnificus CMCP6] gi|319999455|gb|AAO11144.2| GGDEF family protein [Vibrio vulnificus CMCP6] Length = 442 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 26/169 (15%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G +N A + L E+LS+++ D+D FK++ND +GH +GD Sbjct: 272 AELAHRDALTGAMNRHAVRTWLEKKARTVRWGQEQLSVLYLDLDKFKRVNDRYGHQMGDD 331 Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 ++ + V+V + + G R GGEEF ++ Q+A A +RK N Sbjct: 332 ILR----EFVLVVASSLEEGERLVRWGGEEFIVFLPETTLQQAVEKAEMIRK-------N 380 Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S+ +H +T S G+A+ +E ++ + RAD ALY AK GRNRV Sbjct: 381 VSNHLWVHGGMLTCSIGVAQ-MQEERVTEFLARADDALYQAKHRGRNRV 428 >gi|323525235|ref|YP_004227388.1| diguanylate cyclase [Burkholderia sp. CCGE1001] gi|323382237|gb|ADX54328.1| diguanylate cyclase [Burkholderia sp. CCGE1001] Length = 563 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 31/185 (16%) Query: 90 LKELFISYNRI-SQLSRIDCLSG---------LLNHSAFISSLGSYNEKLSIVFFDIDYF 139 L E S N + S +R D L+G LL H + LG N+ L + D+D+F Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIDRAHLG--NQPLCMAIADLDHF 429 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 KQIND FGH GD+ + D +GRLGGEEF + A DL Sbjct: 430 KQINDRFGHAAGDRALEHFVDTCRAELRGADAIGRLGGEEFG----------LLLPATDL 479 Query: 200 ---RKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 R+++E ++ + + P S+ +++S GI E + I+ RAD ALY AK Sbjct: 480 AGGREVVERLRLRLKAVPSAQLPASVTLSVSIGITELSVDDLPERIMSRADTALYAAKTG 539 Query: 251 GRNRV 255 GR+R Sbjct: 540 GRDRT 544 >gi|229529806|ref|ZP_04419196.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|229333580|gb|EEN99066.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|327483809|gb|AEA78216.1| GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 489 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%) Query: 76 ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSI 131 + ++L+ +++G +L L ++R +QL+ D ++GLLN S L +++ L+I Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190 DID FKQIND +GH +GD+VI ++ +Q+ + V R GGEEF EQ Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248 I+ + S + + G T+S GI E + AD+ LYVAK Sbjct: 425 ITRIMQRIFDAVCRESPLILGPG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480 Query: 249 KSGRNRVV 256 SG+N++V Sbjct: 481 TSGKNQLV 488 >gi|332306120|ref|YP_004433971.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173449|gb|AEE22703.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 408 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 19/167 (11%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+G+ + A + + + K +V DID+FK+ ND +GH VGD+V+ ++ +L + Sbjct: 236 DELTGVPSRRALMQYVNTLGRKYVVVMADIDHFKKFNDTYGHDVGDEVLKLVASRLNRIG 295 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------ 214 G R GGEEF + Q+A +R++I + I + P Sbjct: 296 GGGK-AFRFGGEEFIMIFPRKTPQQALPFVEQIRQLIADYPIALREKPRPKKAPKRGTGK 354 Query: 215 -----SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 ++ IT S GIA+R + S I+ +AD ALY AKK+GRN V Sbjct: 355 PNQGKTVKITASFGIAKRSSEFNQFSDIMKQADIALYAAKKAGRNCV 401 >gi|260768520|ref|ZP_05877454.1| GGDEF family protein [Vibrio furnissii CIP 102972] gi|260616550|gb|EEX41735.1| GGDEF family protein [Vibrio furnissii CIP 102972] Length = 280 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 16/213 (7%) Query: 48 IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107 +FLF+ + Y L ++V L I+S+ L L + E+ Y+R D Sbjct: 77 MFLFHQFHSKVYFLSGVVVGQNLLTIVSLGAMLSLFFYD-----EIEWHYHRAIH----D 127 Query: 108 CLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 L+G+ N F+ L +I D+D+FKQ+ND+FGH VGD+ + ++ + Sbjct: 128 ELTGIFNRRYFMEQAERRLKQAKAHYTIAIIDVDHFKQVNDSFGHDVGDRALEAIAQLMH 187 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 F + V R GGEEF GS E E + N + I G + +T+S G Sbjct: 188 RQFRHDL-VARYGGEEFVVLLAGSIE-ETRFKLERFNHEVANHAMEI-YGHHVDLTVSIG 244 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +A ++ + + +AD ALY AK GRNR+V Sbjct: 245 MASVASEQHLHQALKQADIALYDAKGKGRNRLV 277 >gi|126665177|ref|ZP_01736160.1| sensory box/GGDEF domain protein [Marinobacter sp. ELB17] gi|126630547|gb|EBA01162.1| sensory box/GGDEF domain protein [Marinobacter sp. ELB17] Length = 429 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 15/163 (9%) Query: 102 QLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++ R D L+G L +A ++ GS +SIV DID+FKQ+ND +GH GD Sbjct: 261 EMVRFDGLTGALTRTAGELALEKAYMQHRGS-KLPMSIVMADIDHFKQVNDRWGHAAGDI 319 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QINISS 212 V+ ++ ++ V R GGEEF G + + +LA ++ ++N N+ Sbjct: 320 VLRAVTSTMIATLRANDTVIRWGGEEFLLIFGGCNLDQGLLLAERCQQAVQNKHHENVG- 378 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++T+S G+ E +E ++ +I R D+ALY AK SGRN+ Sbjct: 379 ----YVTVSIGLGELQPEEALADLIERVDKALYSAKTSGRNQT 417 >gi|322832370|ref|YP_004212397.1| diguanylate cyclase [Rahnella sp. Y9602] gi|321167571|gb|ADW73270.1| diguanylate cyclase [Rahnella sp. Y9602] Length = 304 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 17/195 (8%) Query: 66 VENLS----LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121 +E+LS +V +S I ++ Y++ Y+ +S S D L+ L N F ++ Sbjct: 117 LEDLSKLAGMVCVSAGIYFIVRYVNNK--------YSDMSINSFRDELTRLPNRRYFKNA 168 Query: 122 LGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 L + VF DID+FK IND +GH +GD V+ S L +F + R+GGEEF Sbjct: 169 LMDLDNVSVYVFLIDIDFFKNINDKYGHYIGDDVLRAFSLMLSELFKNNVIAARVGGEEF 228 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 A S +EA ++A + + IN I T+S G + E ++ R Sbjct: 229 AVIVQTSVFEEARLMAEKILVHVRELVIN----DEIRFTVSIGAGIKKENESQESLFRRI 284 Query: 241 DQALYVAKKSGRNRV 255 D ALY AK SGRNRV Sbjct: 285 DIALYQAKHSGRNRV 299 >gi|256830365|ref|YP_003159093.1| diguanylate cyclase with beta propeller sensor [Desulfomicrobium baculatum DSM 4028] gi|256579541|gb|ACU90677.1| diguanylate cyclase with beta propeller sensor [Desulfomicrobium baculatum DSM 4028] Length = 977 Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 19/201 (9%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 L L + + SLLL + + +++ + + L D L+G+ N F L + Sbjct: 771 LFLALTFLISSLLLARLQTARIRK-----DMLENLVMQDPLTGVPNRRKFQEVLAAEKSR 825 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEF 180 N ++S++ DIDYFK ND FGH GD + ++ L P FVGR GGEEF Sbjct: 826 CKRSNHQISVLMIDIDYFKGFNDRFGHQAGDLALRSVAQTLNATLKRPEDFVGRYGGEEF 885 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEP--ISTII 237 ++ A +A +++ + + I P S IT+S GI+ + I + + Sbjct: 886 VVVLPSTNRSGAERVAQKIQQALFLTNIPYPGSPLSDRITVSLGISTFSPQTDLHIDSGL 945 Query: 238 YRADQALYVAKKSGRNRVVCF 258 + ADQALY AK++GRN CF Sbjct: 946 FSADQALYQAKRNGRN---CF 963 >gi|228967077|ref|ZP_04128113.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228792446|gb|EEM40012.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 415 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ +D L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 246 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 305 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 306 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 364 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 365 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410 >gi|218676505|ref|YP_002395324.1| GGDEF family protein [Vibrio splendidus LGP32] gi|218324773|emb|CAV26448.1| GGDEF family protein [Vibrio splendidus LGP32] Length = 438 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+G N + + + L + + I FD+D+FKQIND GH VGDKV+ Sbjct: 284 DPLTGCRNRTEALDAFYDFEWLAQQGKTIHIALFDLDHFKQINDQHGHEVGDKVLIQFVA 343 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 G + R GGEEF L + + N+L I+ S ++ +T Sbjct: 344 TANESLGEQYLLYRWGGEEFLLVCLEQTALQCNEAINNLYLAIDQS----VWPKALKVTT 399 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+ + E I + I RAD+ALY AK +GRN+V Sbjct: 400 STGVTQLKQHESIRSAIKRADKALYQAKDNGRNQVA 435 >gi|89093127|ref|ZP_01166078.1| GGDEF domain protein [Oceanospirillum sp. MED92] gi|89082777|gb|EAR61998.1| GGDEF domain protein [Oceanospirillum sp. MED92] Length = 379 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 31/208 (14%) Query: 76 ITISLLLGYISGSILKELFISYNRIS----------QLSRIDCLSGLLNHSAFISSLGSY 125 I+ ++L + + ++ LF+S + I+ +++ ID L+ + A L + Sbjct: 150 ISALIMLSWFNQPMISGLFVSASLIALAISVVQNSYRMAFIDELTSIPARRALQDKLSTL 209 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 +K ++ DID+FK+ ND +GH VGD+V+ ++ +L V G R GGEEF Sbjct: 210 GKKYTLAMCDIDHFKKFNDTYGHDVGDQVLKMVAAKLNQVSGGGKAY-RYGGEEFTLVFP 268 Query: 186 GSSEQEAAILANDLRKIIENSQINI--SSGPS-----------------IHITISAGIAE 226 G +E EA LR+ I N ++I + P + +TIS G E Sbjct: 269 GKNEAEALPYIEQLRETIANYPMHIRNQNRPDDNEQGQKMRSKEDDSEIVSVTISIGFCE 328 Query: 227 RCHKEP-ISTIIYRADQALYVAKKSGRN 253 + + P +I +AD+ALY +KK+GRN Sbjct: 329 KTAEIPDPHAVIKKADEALYTSKKNGRN 356 >gi|332160221|ref|YP_004296798.1| hypothetical protein YE105_C0597 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664451|gb|ADZ41095.1| hypothetical protein YE105_C0597 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 448 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144 K L + ++ + D L+GL N + F L NE ++++F D D FK+IND Sbjct: 246 KHLTQENDSLAHRAAHDSLTGLANRAYFEGRLSRTLSDCKTNEHVAVLFLDGDRFKEIND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKI 202 N+GH GD V+ ++D+L + V RLGG+EFA A + +++ + I+AN++ K Sbjct: 306 NYGHAAGDVVLTTIADRLRALLRESDLVARLGGDEFAILLAPIYNTD-DVLIIANNIIKS 364 Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252 + I + G I ++S G+A H + ++ RAD+A+Y AKK R Sbjct: 365 M-TQPITLPDGSEIITSLSIGVAIYPDHAQTPDELLQRADEAMYQAKKGFR 414 >gi|260776227|ref|ZP_05885122.1| putative virulence-mediating protein VirC [Vibrio coralliilyticus ATCC BAA-450] gi|260607450|gb|EEX33715.1| putative virulence-mediating protein VirC [Vibrio coralliilyticus ATCC BAA-450] Length = 634 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 98/196 (50%), Gaps = 13/196 (6%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--- 129 I+ IT+ L Y+ L ++ + + D L+GL N +I + S ++ + Sbjct: 438 ILFITLFFALAYLVIRRLWKMKRITKELESQNTTDPLTGLANRR-YIENWLSQSDNVQQH 496 Query: 130 ---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 ++ DID+FKQ ND GH VGD V+ ++QL + + R GGEEF Sbjct: 497 KSYALSVIDIDHFKQFNDTHGHDVGDTVLKATANQLKNNTRSHDIIARWGGEEFVMIIPI 556 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST----IIYRADQ 242 + LRK +E+ +I+I S+ +TIS G + CH + I T + +AD+ Sbjct: 557 DNVHTVEETLERLRKSVESHKIHIDED-SLAVTISVG-TQLCHYQDIETDWDRVFRKADK 614 Query: 243 ALYVAKKSGRNRVVCF 258 ALY AK+SGRN+ + F Sbjct: 615 ALYQAKQSGRNKCITF 630 >gi|87120134|ref|ZP_01076030.1| probable sensory transduction system regulatory protein [Marinomonas sp. MED121] gi|86164836|gb|EAQ66105.1| probable sensory transduction system regulatory protein [Marinomonas sp. MED121] Length = 549 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 18/174 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ LS +D L+ + N + +L +E LS++ FDID FK+ NDN+GH G Sbjct: 374 KLKVLSELDPLTRIANRRLYNRTLIKEIAMAKRTSEPLSLLVFDIDDFKKYNDNYGHDNG 433 Query: 152 DKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209 D ++ ++ L + T FV R GGEEF A + E+ A ++A +R IE + + Sbjct: 434 DVILQEVAKILTNSITRTTDFVARYGGEEFVAILPATDEKGAFLVAERVRINIEAENLEH 493 Query: 210 ISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I S +T+S GI A+ C KE + +AD ALY AK+ GRN+V+ + Sbjct: 494 IHSSVLPCVTVSVGIATLKGAQLCKKE----LFQQADLALYKAKEGGRNQVITY 543 >gi|94984904|ref|YP_604268.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300] gi|94555185|gb|ABF45099.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300] Length = 385 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 12/164 (7%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + +R D L+GL N + LG + ++ D+D+FK IND GHP GD Sbjct: 211 LERQARTDPLTGLPNRRVLYQEIEQLLLDLGRGSPG-GVILLDLDHFKAINDTHGHPTGD 269 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L + + +GR GGEEF + + ++A LR ++N+ ++ Sbjct: 270 DVLVQTGQLLRLDLRSEDILGRWGGEEFMVVLPATPAEGIGLVAERLRARLQNTPHPVAG 329 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T S G+A + + RAD ALY AK+ GRNRVV Sbjct: 330 ----IVTASFGVAAARPGDTFGELTTRADGALYRAKQGGRNRVV 369 >gi|332160521|ref|YP_004297098.1| hypothetical protein YE105_C0899 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607010|emb|CBY28508.1| GGDEF family protein [Yersinia enterocolitica subsp. palearctica Y11] gi|325664751|gb|ADZ41395.1| hypothetical protein YE105_C0899 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863664|emb|CBX73770.1| uncharacterized protein ydaM [Yersinia enterocolitica W22703] Length = 414 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 Y + S++ D+D+FK IND GH GD+V+ FL+ L + V R GGEEF Sbjct: 285 YGQNFSLILLDVDHFKNINDQLGHHKGDEVLIFLARTLESIIRECDIVFRWGGEEFTILL 344 Query: 185 LGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 ++ + A LA +R+ I+ Q N+ +T+S G+A+ E ++ R D+A Sbjct: 345 PSTNLKGALQLAESIRETIQMICQPNLP-----QLTVSIGVAQHQVGEDTDSLFKRMDEA 399 Query: 244 LYVAKKSGRNRVVC 257 LY AK SGRNRV+ Sbjct: 400 LYRAKASGRNRVLA 413 >gi|309779288|ref|ZP_07674050.1| response regulator WspR [Ralstonia sp. 5_7_47FAA] gi|308921846|gb|EFP67481.1| response regulator WspR [Ralstonia sp. 5_7_47FAA] Length = 371 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 11/177 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +L+ D L+GL N SA LS + D+D FK N Sbjct: 184 QQLLEANLELRRLTNSDGLTGLANRRYLDEYLSAEWRRGAREGTTLSFLMIDVDNFKLYN 243 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD+ + + + G P R GGEEFA G+S + LA +R Sbjct: 244 DTYGHVAGDEALKRIGSTVEACLGRPGDLAARFGGEEFAVVLPGNSAEGLKQLAEKIRSA 303 Query: 203 IENSQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IE Q+ + S+G + ++I + H P +T+I AD ALY AK G+NR V Sbjct: 304 IEALQVPHMHSSTGGYVTVSIGGAVVTPMHDVPTTTLIEAADLALYQAKHEGKNRAV 360 >gi|228902555|ref|ZP_04066706.1| Sensory box/GGDEF family protein [Bacillus thuringiensis IBL 4222] gi|228856996|gb|EEN01505.1| Sensory box/GGDEF family protein [Bacillus thuringiensis IBL 4222] Length = 415 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ +D L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 246 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 305 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 306 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 364 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 365 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410 >gi|256822028|ref|YP_003145991.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM 16069] gi|256795567|gb|ACV26223.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Kangiella koreensis DSM 16069] Length = 1128 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 18/171 (10%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFG 147 I+ +I QLS D L+GLL L S+ +K +++++ D+D FK IND+ G Sbjct: 687 IAEEKIHQLSNYDQLTGLLKREMLEERLQQLLDDSFKQKQAMTVMWLDLDNFKTINDSLG 746 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--- 204 H VGD ++ ++++L G + R+ G+ FAA ++E AA++A ++ ++++ Sbjct: 747 HQVGDLILIEVANRLRFELGKQSIISRIAGDTFAAVLPLTNEHSAALIAKNVLEVVQRQI 806 Query: 205 --NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 NS I +S PSI + IS + K +I A+ A+Y AK GRN Sbjct: 807 KFNSHI-LSISPSIGLAISPNDGQSADK-----LIMCAETAMYRAKHDGRN 851 >gi|167623669|ref|YP_001673963.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167353691|gb|ABZ76304.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 341 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 85/162 (52%), Gaps = 12/162 (7%) Query: 107 DCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+ LN AF L + + L ++ DID+FK ND +GH +GD+V+ ++ +L Sbjct: 182 DALTNSLNRRAFNKDLKGIIELHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKRL 241 Query: 163 VVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKIIENSQINISSGPSI-H 217 + R GGEEFA + LG + Q A + L K+I + G +I + Sbjct: 242 TEACQDGTKLYRFGGEEFALIVPKSQLGRARQLAESMRRSLEKLILKDR---RKGDTINN 298 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I+ S G+AE + + +I RAD+ LY AK+ GRNRV+ S Sbjct: 299 ISASFGVAEYQLNDTDNQLIERADKQLYEAKRLGRNRVMPIS 340 >gi|317402689|gb|EFV83242.1| signaling protein [Achromobacter xylosoxidans C54] Length = 265 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152 + + SR D L+GLLN A + + ++ + + D+D+FK +ND +GH VGD Sbjct: 97 LEETSRRDPLTGLLNRRALMELIKQEVQRAARGGQAFVVAMLDVDHFKAVNDRYGHEVGD 156 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + L+ + GR GGEEF + + A + + L + I++ + Sbjct: 157 RALVELAGAMRHSVREYDLCGRWGGEEFLVLLPATPPETAQGVMDRLVGAVRALAIDVGA 216 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +T+S G+A E S + RADQALY+AK+ GR+RV Sbjct: 217 D-VLRLTVSIGMAYHQLGETFSETLSRADQALYLAKQDGRDRVA 259 >gi|119962393|ref|YP_949721.1| GGDEF domain-containing protein [Arthrobacter aurescens TC1] gi|119949252|gb|ABM08163.1| putative GGDEF domain protein [Arthrobacter aurescens TC1] Length = 400 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 14/174 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + + D L+GLLN AF+ + + + +++ D+DYFK IND GH G Sbjct: 223 TKLKERAERDHLTGLLNRGAFLGLAAKELAGPASRQGGALILADLDYFKAINDEHGHAAG 282 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + ++ + VGR GGEEF G+++Q A +A+++ + +++ Sbjct: 283 DAALCAFAEACTASVRSTDLVGRYGGEEFILFLPGATQQRAEAIASEISR-----RLSSM 337 Query: 212 SGPS--IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +GP T+S G+ P ++ +I AD ALY AK GRNRVV ++ Sbjct: 338 AGPDGLPFPTVSYGVTSTGTGTPDLAFMINVADAALYTAKGQGRNRVVGADSVD 391 >gi|120553236|ref|YP_957587.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120323085|gb|ABM17400.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 504 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 15/210 (7%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+G++ + + + + I ++ G +SG++ + + + ++Q R D L+GL N Sbjct: 291 FFGVDSLSRRSWRRDMADLLI-IVSGLLSGALERNR-LEEDLLNQSIR-DPLTGLHNRRY 347 Query: 118 FISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 + L + ++ + FDID+FK+INDN GH GD+V+ +D L+ T Sbjct: 348 LMPRLDEILAASNRHGDRFCLAMFDIDHFKRINDNLGHLAGDQVLMRFTDVLLAHTRTTD 407 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERC 228 V R GGEEF G +E+E L + + + + + G ++ +T+SAG Sbjct: 408 VVSRFGGEEFLVVFTGVTEREVQTLVMRIMEAVREEEW-LVDGKALTVTVSAGAVCVSEL 466 Query: 229 HKEPIS--TIIYRADQALYVAKKSGRNRVV 256 EP + +I RAD LY AK GR+ +V Sbjct: 467 TDEPATPEALIARADDRLYQAKDGGRDCLV 496 >gi|300716926|ref|YP_003741729.1| RNase II stability modulator [Erwinia billingiae Eb661] gi|299062762|emb|CAX59882.1| RNase II stability modulator [Erwinia billingiae Eb661] Length = 660 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFK 140 SG+ + E + R+ L+ D ++GL N +A ++ +++ IV+ D+D FK Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAINHAIAEALEQRVEQQIGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196 ++ND +GH GD+++ +S ++ + RLGG+EF AA+ S E A+ + Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLDKDQTLARLGGDEFIVLATAASQASLEAMASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + L++ I + SG SI I +S H E +++ AD A+Y AK++GR + Sbjct: 339 DRLKQPFRIGLIEVYSGCSIGIAVSP-----QHGEDKESLMRNADTAMYTAKENGRGKFC 393 Query: 257 CFS 259 FS Sbjct: 394 IFS 396 >gi|262192355|ref|ZP_06050509.1| GGDEF domain protein [Vibrio cholerae CT 5369-93] gi|262031781|gb|EEY50365.1| GGDEF domain protein [Vibrio cholerae CT 5369-93] Length = 261 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 118/265 (44%), Gaps = 31/265 (11%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70 IW C F P F I+ S F+ + + I + Y + L + + Sbjct: 6 IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 48 Query: 71 LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLG-- 123 + S+ + L YI ++ ++ R + L+ D L+G N + +S Sbjct: 49 AISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 108 Query: 124 -SYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 +N++ S+ D+D+FK IND FGH GDKV+ + V G R+GGEEF Sbjct: 109 ERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLMETTRLFTQVVGDNNLY-RIGGEEF 167 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYR 239 S ++A + LR I+ SQ + G + +TIS G+ E + ++ ++ Sbjct: 168 CVTLFDQSLEQAGRVCERLRAIV--SQHLFAFGEKRVQVTISIGVCEYQAGDQLNDLLKF 225 Query: 240 ADQALYVAKKSGRNRVVCFSDIENN 264 AD LY AKK+GRN+V F +N Sbjct: 226 ADMELYRAKKAGRNQVRLFRHGSSN 250 >gi|90407639|ref|ZP_01215819.1| sensory box/GGDEF family protein [Psychromonas sp. CNPT3] gi|90311230|gb|EAS39335.1| sensory box/GGDEF family protein [Psychromonas sp. CNPT3] Length = 325 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 11/171 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145 L ++ ++ S D L+ L NH + + +S++ DID+FK IND Sbjct: 144 LHEAHKKLEHDSHTDSLTQLHNHGFWKECCQQEYKRYIRTQQNVSLLMIDIDHFKNINDT 203 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GHP GDKV+ ++ + + GR GGEEF+ + S ++A ++A + +I+ Sbjct: 204 YGHPFGDKVLQDVAQAIQQQMRSIDIAGRYGGEEFSVLLIDSDLEQAKVVAKRISDVIKA 263 Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 I +TIS GIA K E I AD+ LY+AK +GR+++ Sbjct: 264 LSF---KDKEIELTISIGIASLNKKIESYQQWINIADKGLYIAKNAGRDQI 311 >gi|67459442|ref|YP_247066.1| response regulator PleD [Rickettsia felis URRWXCal2] gi|67004975|gb|AAY61901.1| Regulatory components of sensory transduction system [Rickettsia felis URRWXCal2] Length = 450 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N F I + KL ++ DID FK +ND +GH GDKV+ Sbjct: 287 LAAKDGLTGLFNRRYFDIHLKQMIEKANKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVL 346 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214 +S L + R GGEEF +A A +R IE +I Sbjct: 347 TIVSRILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMDFHIEDQIE 406 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + TIS G+ E +E I + I RAD+A+Y AK +G+N+VV Sbjct: 407 PLKKTISIGVTEYKKEESIESFIERADKAMYEAKTTGKNKVV 448 >gi|15806110|ref|NP_294814.1| GGDEF family protein [Deinococcus radiodurans R1] gi|6458824|gb|AAF10664.1|AE001959_4 GGDEF family protein [Deinococcus radiodurans R1] Length = 356 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 91/196 (46%), Gaps = 13/196 (6%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRI---------DCLSGLLNHSAFISSLG 123 ++++ + LL+ +G L L I NR LS I D LS L N F Sbjct: 158 LLTVYLPLLVVTYAG-FLVSLGIQRNRYRLLSLIATYEQQAHQDALSDLPNRRQFDLDFV 216 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + + DID+FK+IND +GH GD+V+ L L + R GGEEFA Sbjct: 217 RMDVGDLLCLVDIDHFKKINDTYGHAAGDEVLTQLGGVLKGRLRSHDQAYRYGGEEFAVI 276 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 +LA LR+ +E++ +G +T+S G+ R P+ T ADQA Sbjct: 277 FRSPGNAAPELLAERLRQAVEHTSFTALAGHP--LTVSIGVTRRG-AAPLDTCFLEADQA 333 Query: 244 LYVAKKSGRNRVVCFS 259 LY AK +GRN+V + Sbjct: 334 LYAAKTAGRNQVRVWP 349 >gi|117924448|ref|YP_865065.1| diguanylate cyclase [Magnetococcus sp. MC-1] gi|117608204|gb|ABK43659.1| diguanylate cyclase [Magnetococcus sp. MC-1] Length = 634 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 10/163 (6%) Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D ++GL N + S +K+ ++ D+D+FKQ+ND +GH VGD V+ Sbjct: 464 VDPMTGLHNRRFLQECANNLCSGSQRRGKKIGLLMCDLDFFKQVNDTYGHDVGDSVLKIT 523 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 S+ L V R GGEEF + E LA +RK IE ++ + P + Sbjct: 524 SEILQNSVRQSDLVVRFGGEEFIIILVDIESDEVMGLAEKIRKQIEATEFPVPGKPPLKK 583 Query: 219 TISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259 TIS GI+ E T+ Y AD ALY AK++GRN+ V F+ Sbjct: 584 TISIGISVYPDDEDGFWKTLKY-ADVALYKAKENGRNQSVRFT 625 >gi|320155997|ref|YP_004188376.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] gi|319931309|gb|ADV86173.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] Length = 439 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 14/183 (7%) Query: 78 ISLLLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIV 132 I LLL G+ L +L + ++ ++S +D LSGL N+ F++ + E V Sbjct: 262 IPLLLAITVGACYYLYKLNKAQKKLKEISYLDPLSGL-NNRHFLAEVEKQQLPLEHYYAV 320 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK +ND +GH +GD+VI ++ + + R+GGEEF S EA Sbjct: 321 MLDIDHFKSVNDRYGHDIGDQVIRRVAKVVKSRIRVSDYAFRIGGEEFLLLVKTPSSNEA 380 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 + +R+ +E N++ P H+T+S G + + I AD LY AK++GR Sbjct: 381 RQVCERIRQDVE----NMTQAP--HVTVSIGFT--ALQTQLDETIRIADSHLYDAKRNGR 432 Query: 253 NRV 255 NRV Sbjct: 433 NRV 435 >gi|289670070|ref|ZP_06491145.1| putative sensor protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 1012 Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 7/174 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +L L I + + + D L+GL N F IS L + DID+FK+ Sbjct: 836 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 895 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND++ H GD V+ + L RLGGEEFA ++ +EA L +R Sbjct: 896 INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLEEAQALCLRIRA 955 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + S + +T SAG+AE + S+++ RAD ALY AK +GR+R+ Sbjct: 956 LFHARHDWWGSVEGLQVTFSAGVAELRDDDTGSSLMQRADHALYEAKSAGRDRI 1009 >gi|228941196|ref|ZP_04103749.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974128|ref|ZP_04134698.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228785468|gb|EEM33477.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818355|gb|EEM64427.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 415 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ +D L+ + N F L +EK++I+ FDID FK +ND +GH Sbjct: 246 YQEQERLAMVDSLTEIYNRLKFQQILEVEWEKVIRSDEKIAIILFDIDNFKTVNDTYGHD 305 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 306 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 364 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 365 --TGIS-KLTASFGVALYEQGTTREELMQRADIALYEAKKNGKNQVCVY 410 >gi|221633786|ref|YP_002523012.1| putative sensory box protein [Thermomicrobium roseum DSM 5159] gi|221155589|gb|ACM04716.1| putative sensory box protein [Thermomicrobium roseum DSM 5159] Length = 1056 Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 8/166 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ +L+ D L+G+ N ++ ++ L E + + D+D FK +ND FGH VGD ++ Sbjct: 594 QLERLATTDELTGIANRASLLAHLDHVARAGEPFAALLIDLDGFKAVNDTFGHLVGDALL 653 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ +L VGRLGG+EF A + A LAN R ++ + G + Sbjct: 654 REVAQRLRRSVRQDDLVGRLGGDEFLVLARVQDTEGARELAN--RILVALTHPFRIDGQT 711 Query: 216 IHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259 IH+ S GIA C P T I+ AD ALY AK+ G+ RVV FS Sbjct: 712 IHLGGSVGIA-FCDGRPCDTTEILRAADLALYEAKRRGKGRVVLFS 756 >gi|167836162|ref|ZP_02463045.1| GGDEF domain protein [Burkholderia thailandensis MSMB43] Length = 466 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 9/175 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L+EL + ++ L+ D L+G N FI + + S++ D+D FK I Sbjct: 291 LQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTI 350 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 NDN+GH VGD V+ Q + + R+GGEEF A+ +A +R Sbjct: 351 NDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTT 410 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 411 IANAPFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVV 464 >gi|293410312|ref|ZP_06653888.1| conserved hypothetical protein [Escherichia coli B354] gi|291470780|gb|EFF13264.1| conserved hypothetical protein [Escherichia coli B354] Length = 569 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 376 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 435 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 436 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 495 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 496 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 555 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 556 KQAGRNRV 563 >gi|218885613|ref|YP_002434934.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756567|gb|ACL07466.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 498 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 10/176 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 Y + + D L+ L N + L + Y ++++ D+D+FK IND +GH Sbjct: 319 YREVKLQADHDALTRLHNRRSLDERLRTEFERHRRYGHSMTLLLLDLDHFKAINDTYGHL 378 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ L+D L T F R GGEEF + E + +LA LR IE ++ Sbjct: 379 AGDAVLRELADVLRHSIRTTDFAARYGGEEFVVILPHTEEAQGHMLAERLRHRIEQCRVQ 438 Query: 210 ISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 G + T+S G+A + ++ AD+ALY+AK +GRN V S E+ Sbjct: 439 -HHGVQLSATVSIGVAGFSPGAFANVEELVREADRALYLAKANGRNVVCTMSGCED 493 >gi|78484454|ref|YP_390379.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78362740|gb|ABB40705.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2] Length = 461 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 10/179 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 +++ +++ ID L+ + N + L LS+ DID+FK +ND +GH Sbjct: 284 HSKFQKMAAIDSLTAIYNRRFGMDRLREDFSRAVREQSSLSLAMVDIDHFKSVNDTYGHL 343 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGDK I ++ + V R GGEEF G+S A + +R ++++ Sbjct: 344 VGDKAIKLIATIIKKTLREGDIVVRYGGEEFLMILHGASSTNARNVCERIRHQVKDTFFK 403 Query: 210 ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 I +T+S GIA ++ +I+ ADQALY AK+ GRNRVV F + Sbjct: 404 -EGNQQIQLTVSIGIAAYPEQQAGDEMALIHMADQALYYAKEGGRNRVVPFRKVNEEVA 461 >gi|117918906|ref|YP_868098.1| diguanylate cyclase with GAF sensor [Shewanella sp. ANA-3] gi|117611238|gb|ABK46692.1| diguanylate cyclase with GAF sensor [Shewanella sp. ANA-3] Length = 347 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 11/193 (5%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLS 130 +I + L +I +I L + + L+ D L+G N F ++ ++E Sbjct: 154 AIELQCLANWIGLNI--SLRLQLKELEYLASTDHLTGAANRRVFTQKIRQAMTEFHENGQ 211 Query: 131 IVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 FF DID+FK +ND FGH GD V+ + + +P R+GGEEFA Sbjct: 212 SFFFGLMDIDHFKMLNDQFGHSAGDYVLQRIVAISETMMTSPGKFFRIGGEEFAIIFPEQ 271 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYV 246 SE E ND+R+ I + ++ P I +++S G A H +++ R+D+ALY Sbjct: 272 SEYEPLRFFNDIREAIALAAMDYDGIP-ISVSVSIGFTAMHIHDNTPESLLRRSDKALYQ 330 Query: 247 AKKSGRNRVVCFS 259 AK +GRNRV+ F+ Sbjct: 331 AKLAGRNRVLMFN 343 >gi|322615719|gb|EFY12639.1| hypothetical protein SEEM315_11144 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618780|gb|EFY15669.1| hypothetical protein SEEM971_11408 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322621806|gb|EFY18656.1| hypothetical protein SEEM973_16867 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627531|gb|EFY24322.1| hypothetical protein SEEM974_12706 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630838|gb|EFY27602.1| hypothetical protein SEEM201_04083 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637944|gb|EFY34645.1| hypothetical protein SEEM202_04839 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642214|gb|EFY38822.1| hypothetical protein SEEM954_00677 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645804|gb|EFY42327.1| hypothetical protein SEEM054_14318 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651099|gb|EFY47484.1| hypothetical protein SEEM675_13292 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656645|gb|EFY52933.1| hypothetical protein SEEM965_17245 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659930|gb|EFY56173.1| hypothetical protein SEEM19N_09329 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661861|gb|EFY58077.1| hypothetical protein SEEM801_15151 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666393|gb|EFY62571.1| hypothetical protein SEEM507_04169 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672812|gb|EFY68923.1| hypothetical protein SEEM877_16519 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676241|gb|EFY72312.1| hypothetical protein SEEM867_15728 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680726|gb|EFY76764.1| hypothetical protein SEEM180_13498 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684380|gb|EFY80384.1| hypothetical protein SEEM600_16622 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194282|gb|EFZ79479.1| hypothetical protein SEEM581_16595 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197429|gb|EFZ82569.1| hypothetical protein SEEM501_12216 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201454|gb|EFZ86518.1| hypothetical protein SEEM460_20601 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205968|gb|EFZ90930.1| hypothetical protein SEEM020_10035 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212980|gb|EFZ97782.1| hypothetical protein SEEM6152_11543 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215352|gb|EGA00096.1| hypothetical protein SEEM0077_06758 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223317|gb|EGA07654.1| hypothetical protein SEEM0047_19617 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226156|gb|EGA10373.1| hypothetical protein SEEM0055_17980 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228809|gb|EGA12938.1| hypothetical protein SEEM0052_04145 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236580|gb|EGA20656.1| hypothetical protein SEEM3312_19846 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239920|gb|EGA23967.1| hypothetical protein SEEM5258_01445 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242033|gb|EGA26062.1| hypothetical protein SEEM1156_13742 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247819|gb|EGA31756.1| hypothetical protein SEEM9199_13999 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251541|gb|EGA35412.1| hypothetical protein SEEM8282_18017 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258092|gb|EGA41769.1| hypothetical protein SEEM8283_07171 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263765|gb|EGA47286.1| hypothetical protein SEEM8284_08439 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265641|gb|EGA49137.1| hypothetical protein SEEM8285_06025 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270086|gb|EGA53534.1| hypothetical protein SEEM8287_18206 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 354 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%) Query: 32 SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80 S+ +FI ++ F ANI F + L P GL + + L +V I+I + Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLALPMVGIAIQHVI 163 Query: 81 LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134 Y + ++ +L ++ LS +D L+GL N + L + S ++ Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND++GH +GD+ + +S + + V R GGEEF + Q+A Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283 Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +R+ + + +I S+ ++T+S GIA + I I +AD+ALY AK GR Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGNAIEKADKALYEAKHLGR 342 Query: 253 NRVVCFSDIE 262 N ++ D+ Sbjct: 343 NHILVSDDMR 352 >gi|318607213|emb|CBY28711.1| inner membrane protein YfiN [Yersinia enterocolitica subsp. palearctica Y11] Length = 453 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144 K L + ++ + D L+GL N + F L NE ++++F D D FK+IND Sbjct: 246 KHLTQENDSLAHRAAHDSLTGLANRAYFEGRLSRTLSDCKTNEHVAVLFLDGDRFKEIND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKI 202 N+GH GD V+ ++D+L + V RLGG+EFA A + +++ + I+AN++ K Sbjct: 306 NYGHAAGDVVLTTIADRLRALLRESDLVARLGGDEFAILLAPIYNTD-DVLIIANNIIKS 364 Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252 + I + G I ++S G+A H + ++ RAD+A+Y AKK R Sbjct: 365 M-TQPITLPDGSEIITSLSIGVAIYPDHAQTPDELLQRADEAMYQAKKGFR 414 >gi|156975533|ref|YP_001446440.1| hypothetical protein VIBHAR_03265 [Vibrio harveyi ATCC BAA-1116] gi|156527127|gb|ABU72213.1| hypothetical protein VIBHAR_03265 [Vibrio harveyi ATCC BAA-1116] Length = 403 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 5/155 (3%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +++ D L+GL N S EK +I DID+FK++NDN+GH GD + +++ Sbjct: 253 RMANQDALTGLWNRRFLFGQACSGCEKRNIAMLDIDFFKKVNDNYGHDGGDAALVMVANI 312 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L + F + + R GGEEF A GS + + I +R+ +E + + + SI +TIS Sbjct: 313 LKIYFPDDV-IARFGGEEFCIQACGSYD-DFVIRLEQMRQRVEKTPVPYQND-SIQVTIS 369 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G++ + + I AD LY AK+SGRN+ + Sbjct: 370 IGVSSV--EGNLDQQIKVADDRLYQAKESGRNQTI 402 >gi|71279148|ref|YP_267210.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71144888|gb|AAZ25361.1| sensory box/GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 451 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 13/177 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 ELF L+ D L+ L N FI Y+ ++++ DID+FK IND Sbjct: 277 ELFKLKEEFKLLANTDPLTNLYNRRFFIEQAEKEYQRAKRYSLSMTLISIDIDHFKSIND 336 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGHP GD+V+ ++ QL + R+GGEEF+ +S A A +++ E Sbjct: 337 QFGHPAGDQVLIEIAKQLKASLRQTDILARIGGEEFSILLPETSAMSAMTFAERIKE--E 394 Query: 205 NSQINISSG--PSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCF 258 S++ I+ I++++S G++ + +++ RAD+ALY AK +GRN VC+ Sbjct: 395 QSRLIITGDWQGEINLSVSIGVSSLIASDKAFDVLFSRADKALYQAKNTGRN-TVCY 450 >gi|21230829|ref|NP_636746.1| hypothetical protein XCC1372 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769172|ref|YP_243934.1| hypothetical protein XC_2866 [Xanthomonas campestris pv. campestris str. 8004] gi|21112432|gb|AAM40670.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574504|gb|AAY49914.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 221 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 89/185 (48%), Gaps = 22/185 (11%) Query: 96 SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145 S NR+ L+ D L+G+ N ++L E LSI F D+D FK++ND Sbjct: 31 SENRMRHLAEQASRDALTGVFNRHQLGTALAHEFELATRQAWPLSIAFIDLDDFKRVNDA 90 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203 GH VGD+V+ + L + T V R GGEEF L ++ EAA++ + L + Sbjct: 91 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTTAEAALMVIERILAETA 149 Query: 204 ENSQINISSGPSIHITISAGIAERCHK------EPISTIIYRADQALYVAKKSGRNRVVC 257 + GP +HIT SAG+A H E I ++ AD LY +K GRNRV Sbjct: 150 RTPMAQLPGGP-LHITFSAGLA--THGGGDRQFESIEHLLQAADTTLYRSKHRGRNRVTA 206 Query: 258 FSDIE 262 + E Sbjct: 207 YDATE 211 >gi|262045085|ref|ZP_06018126.1| response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037600|gb|EEW38830.1| response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 168 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 74/154 (48%), Gaps = 7/154 (4%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ LLN L Y+ L++ DID+FK+IND +GH VGD+ I ++ Sbjct: 6 DALTSLLNRRYLPVVLKHEVTLAIEYDLPLTVAIIDIDFFKEINDKWGHMVGDRAIKHVA 65 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D L + ++ R GGEEF + + EA L LRK I N+ I IT Sbjct: 66 DLLSDNIRSSDYLFRYGGEEFLLVLVETRAAEAFPLLERLRKKIGQLAFNVGGDTQIPIT 125 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 S G A + ++ AD ALY AK+ GRN Sbjct: 126 ASIGFAAHTGHPDYNLLLRDADNALYAAKREGRN 159 >gi|196019114|ref|XP_002118927.1| hypothetical protein TRIADDRAFT_62909 [Trichoplax adhaerens] gi|190577679|gb|EDV18587.1| hypothetical protein TRIADDRAFT_62909 [Trichoplax adhaerens] Length = 455 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S+ DID FK IND GH GD+V+ +S + R GGEEF Sbjct: 229 KRKFSVAIADIDRFKSINDTLGHEQGDEVLRQISKVFSSRLRGQDILARWGGEEFMFIFT 288 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 + E A ++R I+ N+ +NI+ G IH+T S G++E IS + RADQALY Sbjct: 289 DTDEAGAVNALENIRDILNNAPLNIN-GSEIHVTSSFGVSEVNPDIDISCAVRRADQALY 347 Query: 246 VAKKSGRNRV-VC 257 AK +GR+ V +C Sbjct: 348 YAKDNGRDCVYIC 360 >gi|153875655|ref|ZP_02003359.1| two-component response regulator [Beggiatoa sp. PS] gi|152067881|gb|EDN66641.1| two-component response regulator [Beggiatoa sp. PS] Length = 335 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 95/172 (55%), Gaps = 17/172 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151 + +L+ +DCL+ + N F L S ++L S++F DIDYFK ND++GH G Sbjct: 162 ELERLNALDCLTQIANRRRFEEYLSSEWQRLLPVRLPLSLIFADIDYFKHYNDHYGHQAG 221 Query: 152 DKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 D+ + ++ Q + P+ V R GGEEF ++ QEA +A ++++ + ++ Sbjct: 222 DECLQQVA-QAINRTAKPLSYLVARYGGEEFVILLPQTNIQEATQIAEEIQESV--YKLK 278 Query: 210 ISSGPSI---HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 I + PS+ ++++S GI+ + +S ++ AD+ALY AK GRN +V Sbjct: 279 IVTAPSVENKYVSLSMGISSLIPNKDVSPKELVKMADEALYEAKGQGRNCIV 330 >gi|194336472|ref|YP_002018266.1| diguanylate cyclase [Pelodictyon phaeoclathratiforme BU-1] gi|194308949|gb|ACF43649.1| diguanylate cyclase [Pelodictyon phaeoclathratiforme BU-1] Length = 433 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 NEK+S+ DIDYFK+ ND GH GD+ + L+D + R GGEEFA Sbjct: 285 NEKVSLAMIDIDYFKRYNDANGHLAGDRALKALADIISTQCRAYDVPSRFGGEEFAILFP 344 Query: 186 GSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243 + + A+ +A LRKII P+ +T+S G+A +I AD+A Sbjct: 345 KTDTETASEIAERLRKIISRESFRQQQQQPAGELTVSIGVATFPADAADWHNLINNADRA 404 Query: 244 LYVAKKSGRNRVVCF 258 LY AK +GRN+VV F Sbjct: 405 LYKAKSNGRNKVVTF 419 >gi|254508490|ref|ZP_05120609.1| ggdef family protein [Vibrio parahaemolyticus 16] gi|219548602|gb|EED25608.1| ggdef family protein [Vibrio parahaemolyticus 16] Length = 486 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 13/169 (7%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + + L+ D ++GLLN L + E ++I FDID FK IND +GH VGD Sbjct: 323 VEHGYLKDLAAKDAMTGLLNRRGLQDFLVNAQHGEYVAIAVFDIDNFKSINDTYGHDVGD 382 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIENSQIN 209 VI +++DQ+ V R GGEEF GS+ A+ + LR I SQ Sbjct: 383 NVICYMADQITYSIRASDAVARFGGEEFVVYMSGSNRD--ALKKSLLRVQQSIRSRSQEV 440 Query: 210 ISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ G T+S G I + + AD+ LY AK SG++++V Sbjct: 441 VAPG----FTVSGGVEIVDEAQASNFEALFKAADEKLYQAKTSGKDKLV 485 >gi|119470954|ref|ZP_01613538.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Alteromonadales bacterium TW-7] gi|119445976|gb|EAW27256.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Alteromonadales bacterium TW-7] Length = 362 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 71/127 (55%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 SI+ D+D+FK INDN+GH GD V+ + L F + R GGEEF ++ Sbjct: 232 SILLLDLDHFKSINDNYGHDSGDTVLIEFTKMLESHFSSDSIKARYGGEEFVVILPKATI 291 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 Q A +AN+ R+ + N+ + ++ +T S G+A+ + + +AD+ LY AK+ Sbjct: 292 QIAEHIANNFRESVANTTLLNVESKNVALTCSIGVAQVNKLSDYNDALKQADRCLYKAKE 351 Query: 250 SGRNRVV 256 +GRN+VV Sbjct: 352 TGRNKVV 358 >gi|333003053|gb|EGK22607.1| cellulose synthesis regulatory protein [Shigella flexneri VA-6] Length = 558 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ LL Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|307728993|ref|YP_003906217.1| diguanylate cyclase [Burkholderia sp. CCGE1003] gi|307583528|gb|ADN56926.1| diguanylate cyclase [Burkholderia sp. CCGE1003] Length = 563 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 31/185 (16%) Query: 90 LKELFISYNRI-SQLSRIDCLSG---------LLNHSAFISSLGSYNEKLSIVFFDIDYF 139 L E S N + S +R D L+G LL H + LG N+ L + D+D+F Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIDRAHLG--NQPLCMAIADLDHF 429 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 KQIND FGH GD+ + D +GRLGGEEF + A DL Sbjct: 430 KQINDRFGHAAGDRALEHFVDTCRAELRGADAIGRLGGEEFG----------LLLPATDL 479 Query: 200 ---RKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 R+++E ++ + + P S+ +++S GI E + I+ RAD ALY AK Sbjct: 480 AGGREVVERLRLRLKAVPSSKLPASVTLSVSIGITELSVDDLPERIMSRADMALYAAKTG 539 Query: 251 GRNRV 255 GR+R Sbjct: 540 GRDRT 544 >gi|289166719|ref|YP_003456857.1| regulatory protein (GGDEF domain) [Legionella longbeachae NSW150] gi|288859892|emb|CBJ13878.1| putative regulatory protein (GGDEF domain) [Legionella longbeachae NSW150] Length = 735 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S++ D+D+FK+IND +GH GD + L L R GGEEF A + Sbjct: 582 ISLLMLDLDHFKKINDTYGHDAGDVALKELGKILQEDIRVGDIAARYGGEEFIVAFYNTD 641 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVA 247 E+ A +R+ + Q+ + P IT+S G+A + +I AD+ALY A Sbjct: 642 EKTIKTRAESIREAVSRLQVKYGAQPVGPITVSIGVAVYPTDGRNTNELIESADKALYFA 701 Query: 248 KKSGRNRVVCFSDIEN 263 K +G+NR+V +S+I+N Sbjct: 702 KTNGKNRIVLYSEIDN 717 >gi|153833943|ref|ZP_01986610.1| response regulator [Vibrio harveyi HY01] gi|148869681|gb|EDL68662.1| response regulator [Vibrio harveyi HY01] Length = 404 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 5/155 (3%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +++ D L+GL N S EK +I DID+FK++NDN+GH GD + +++ Sbjct: 253 RMANQDALTGLWNRRFLFGQACSGCEKRNIAMLDIDFFKKVNDNYGHDGGDAALVMVANI 312 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L + F + + R GGEEF A GS + + I +R+ +E + + + SI +TIS Sbjct: 313 LKIYFPDDV-IARFGGEEFCIQACGSYD-DFVIRLEQMRQRVEKTPVPYQND-SIQVTIS 369 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G++ + + I AD LY AK+SGRN+ + Sbjct: 370 IGVSSV--EGNLDQQIKVADDRLYQAKESGRNQTI 402 >gi|167031624|ref|YP_001666855.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas putida GB-1] gi|166858112|gb|ABY96519.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas putida GB-1] Length = 452 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 82/158 (51%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + LS DID+FK+IND GHP+GD+VI L+ Sbjct: 293 DSLTGLYNHTHILQLLEDCSFRARREQQPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 352 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 L F+GR GGEEFA ++ A + +++R+ ++I + P + Sbjct: 353 LFLKQRLRKTDFIGRYGGEEFAIVMPNTALDAAHRVLDEIRRRF--AEILYPAQPRDLQC 410 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T SAG+ + T+ AD+ALY AK +GRN VV Sbjct: 411 TFSAGVVQLDEGLDALTMASAADEALYRAKHAGRNCVV 448 >gi|90020307|ref|YP_526134.1| triosephosphate isomerase [Saccharophagus degradans 2-40] gi|89949907|gb|ABD79922.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 855 Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 8/168 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R++ ++ D L+ L N AF L + Y+ K++++ D+D+FK IND++GHPVG Sbjct: 418 RLAHIAFTDELTSLPNRLAFSKKLKNTMKLAEKYHGKVAMLIVDLDHFKDINDSYGHPVG 477 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D +I + +L V ++ R+GG+EFA +AA+ + + I I + Sbjct: 478 DSLICEVVTRLKEVLVGDEYLARIGGDEFALILDNVRSHDAALHYSRRIQKIMAEPIYLM 537 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 GP ++ +S G+A E +I AD A++ AKKSGRN V+ + Sbjct: 538 EGPVVNARVSMGVALFPDDGEDAVALIKAADLAMHQAKKSGRNTVLPY 585 >gi|327395334|dbj|BAK12756.1| GGDEF domain protein YneF [Pantoea ananatis AJ13355] Length = 485 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 22/249 (8%) Query: 24 PHTFMIYFSIFFSIFIATVIF----IANIFLFYIGLTPFYGLEYIL----VENLSLVIIS 75 P +I+ +I + + ++I I+ I L G+ G +L + + L + + Sbjct: 226 PVPALIWCAIVLPVPLTSLITLITGISQIILVSHGVMNIQGDNSLLPISHLTSARLGVAT 285 Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSI 131 I +S L+ +S +++L R++ + D L+ LL+ S L S ++ + Sbjct: 286 IALSPLIVAVSMDAIRQL---NERLALRADYDFLTQLLSRSGLYEHLRNEACSEQRQVGV 342 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + D+DYFK +NDNFGH GD+V+ ++ ++ + G + R GGEEF S + Sbjct: 343 ILLDVDYFKSVNDNFGHDAGDRVLEEIARRISPLVGNHGHICRFGGEEFVIVQFDLSPEM 402 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK------EPISTIIYRADQALY 245 LA +R+ I + + G ++ +T+S G+A + E ++ +I AD+ LY Sbjct: 403 IYSLAEGIRQSIVKEKF-LLHGNAVTVTVSLGLAYGQAQPGVEWAETVNRLISAADKNLY 461 Query: 246 VAKKSGRNR 254 ++K++GRN+ Sbjct: 462 ISKRNGRNQ 470 >gi|309702244|emb|CBJ01561.1| cellulose synthesis regulatory protein (signal transduction protein) [Escherichia coli ETEC H10407] gi|323937225|gb|EGB33505.1| diguanylate cyclase domain-containing protein [Escherichia coli E1520] Length = 564 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|302339964|ref|YP_003805170.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293] gi|301637149|gb|ADK82576.1| diguanylate cyclase [Spirochaeta smaragdinae DSM 11293] Length = 329 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 I+ Y LS++ FDID+F+Q+N+ +G +GD ++ L++ + + GR GGE Sbjct: 193 ITRAERYGLPLSLIIFDIDHFRQLNEAYGRTIGDGLLKRLANLVASLLRDSDIFGRTGGE 252 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EFA + E A+LA LR IE ++ + +T S GI E Sbjct: 253 EFAVVVPHTDENSTAVLAEKLRGAIEGFPFDL----PMKVTCSFGITSFKKGESWQDFFS 308 Query: 239 RADQALYVAKKSGRNRV 255 RAD+ L +AK+ GRNRV Sbjct: 309 RADEGLLLAKQEGRNRV 325 >gi|322419658|ref|YP_004198881.1| PAS/PAC sensor-containing diguanylate cyclase [Geobacter sp. M18] gi|320126045|gb|ADW13605.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M18] Length = 300 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 99 RISQLSRIDCLSGLLNHS----------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 R+ +L ++ L GL + + + + Y+ I+F D+D FK +ND FGH Sbjct: 132 RVRELEKLALLDGLTQIANRRYLDRELESRLEEMNRYDIPFGILFMDLDDFKTVNDRFGH 191 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ F++ L GR GGEEF + L LR++ E S + Sbjct: 192 ETGDRVLQFVAGTLSANSRPFDLYGRWGGEEFVGIIRNVNAANLKHLGQRLRRLAEKSFV 251 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G + +TIS G K+ + T++ RAD +Y +K +G+NR+ Sbjct: 252 -LVKGEKLRVTISIGATMAVKKDTVHTLLQRADSLMYQSKAAGKNRLT 298 >gi|191173333|ref|ZP_03034863.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11] gi|300994239|ref|ZP_07180794.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1] gi|190906450|gb|EDV66059.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli F11] gi|300304949|gb|EFJ59469.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1] gi|324013467|gb|EGB82686.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1] Length = 558 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ LL Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|319780750|ref|YP_004140226.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166638|gb|ADV10176.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 402 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 10/162 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-----ISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGD 152 ++ S D LS LLN F ++ LG+ + +++V D+D+FK +ND+FGH GD Sbjct: 220 VTSKSETDTLSRLLNRGGFTRHAELAVLGALRQGVPVALVIADLDHFKSVNDSFGHASGD 279 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI + L GR+GGEEFA G++ A + A R + I Sbjct: 280 RVIETFAGFLREAAAAHHVAGRIGGEEFAIILPGTNLAAARLFAEGTRSAF--GALPIDG 337 Query: 213 GPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 P+ + T S G+AE E + ++ RADQALY AK +GR+ Sbjct: 338 LPADNRCTASFGVAELHASEDFADLMRRADQALYQAKNAGRD 379 >gi|307138623|ref|ZP_07497979.1| putative diguanylate cyclase [Escherichia coli H736] gi|331642576|ref|ZP_08343711.1| cellulose synthesis regulatory protein [Escherichia coli H736] gi|331039374|gb|EGI11594.1| cellulose synthesis regulatory protein [Escherichia coli H736] Length = 558 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129 T+ L+ Y+ + +++ + + + D L+ L N A S + Sbjct: 365 TMLLISWYVIRRMASNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARSLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|323528074|ref|YP_004230226.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001] gi|323385076|gb|ADX57166.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1001] Length = 667 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 11/182 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYF 139 SG+ + E ++ R++QL+ D L+GL N +A + + E + ++F D+D F Sbjct: 220 SGTDITEERLAQERLTQLANTDSLTGLANRNAIQDKIRTAIEEAAPGESVGVLFLDLDNF 279 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K++ND++GH GD++I +S + + RLGG+EF A + E A Sbjct: 280 KKVNDHYGHVFGDRLIRDVSAAIGTCLNEGDTLARLGGDEFIVLAAKGTAHELEATA--- 336 Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++I+E + S G ++ S GIA H + + ++I AD A+YVAK G+ Sbjct: 337 QRILERMRTPFSLGLVEVYTGCSIGIARYPEHGDNLESLIRSADTAMYVAKDEGKRTHRV 396 Query: 258 FS 259 FS Sbjct: 397 FS 398 >gi|297565096|ref|YP_003684068.1| diguanylate cyclase [Meiothermus silvanus DSM 9946] gi|296849545|gb|ADH62560.1| diguanylate cyclase [Meiothermus silvanus DSM 9946] Length = 206 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 7/153 (4%) Query: 110 SGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 S +++ F+ ++ + E+ L++ DID F +N N+GH GDKVIA + L Sbjct: 7 SAVVSRDTFMQTVLGWGEERSLTVAIADIDEFMPVNQNYGHETGDKVIALVQKTLEASLP 66 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE 226 T V R GG+EFAAA G S +EA I+ ++R+ + + + + S P I +S GIA Sbjct: 67 TGCLVTRWGGDEFAAALPGFSPEEALIVLEEIRQHLAKKHDLGLVSLP---IRLSIGIAS 123 Query: 227 -RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 H S ++ AD+AL AK+ GR R + Sbjct: 124 LPQHVSDPSQLLQAADEALLRAKREGRGRASIY 156 >gi|194445805|ref|YP_002043795.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197249334|ref|YP_002149495.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262036|ref|ZP_03162110.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245322|ref|YP_002218428.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205357485|ref|ZP_02348051.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205357672|ref|ZP_02572454.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205359903|ref|ZP_02832991.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205360535|ref|ZP_02684370.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194404468|gb|ACF64690.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197213037|gb|ACH50434.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240291|gb|EDY22911.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197939838|gb|ACH77171.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205321460|gb|EDZ09299.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330411|gb|EDZ17175.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205342367|gb|EDZ29131.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348694|gb|EDZ35325.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|321222478|gb|EFX47550.1| Putative membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 308 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 22/276 (7%) Query: 8 FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58 F IW H + + F + S+ +FI ++ F ANI F + L P Sbjct: 32 FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91 Query: 59 ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112 GL + + L +V I+I + Y + ++ +L ++ LS +D L+GL Sbjct: 92 NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151 Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 N + L + S ++ DID+FK ND++GH +GD+ + +S + + Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 211 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226 V R GGEEF + Q+A A +R+ + + +I S+ ++T+S GIA Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + I I +AD+ALY AK GRN ++ D+ Sbjct: 272 LTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 306 >gi|170701034|ref|ZP_02892013.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] gi|170134056|gb|EDT02405.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] Length = 492 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 14/194 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128 I +S++LG + L+ + + + L+R D L+GL N +F L Sbjct: 300 IAVSVMLG----TQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRARSV 355 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 S++F D+D FK ND +GH GD +A ++ + P R GGEEF + Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 415 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALY 245 E AA +A +R I+ + + H+T S G+A + E ++I AD+ALY Sbjct: 416 PETGAAQIAERIRAAIDELALEHAGSEHGHVTASIGLASWTPEDDEEAGSVIKAADEALY 475 Query: 246 VAKKSGRNRVVCFS 259 AK +GRN+V F Sbjct: 476 YAKATGRNKVAAFQ 489 >gi|188992319|ref|YP_001904329.1| hypothetical protein xccb100_2924 [Xanthomonas campestris pv. campestris str. B100] gi|167734079|emb|CAP52285.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris] Length = 507 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 89/185 (48%), Gaps = 22/185 (11%) Query: 96 SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145 S NR+ L+ D L+G+ N ++L E LSI F D+D FK++ND Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALAHEFELATRQAWPLSIAFIDLDDFKRVNDA 376 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203 GH VGD+V+ + L + T V R GGEEF L ++ EAA++ + L + Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTTAEAALMVIERILAETA 435 Query: 204 ENSQINISSGPSIHITISAGIAERCHK------EPISTIIYRADQALYVAKKSGRNRVVC 257 + GP +HIT SAG+A H E I ++ AD LY +K GRNRV Sbjct: 436 RTPMAQLPGGP-LHITFSAGLA--THGGGDRQFESIEHLLQAADTTLYRSKHRGRNRVTA 492 Query: 258 FSDIE 262 + E Sbjct: 493 YDATE 497 >gi|167587868|ref|ZP_02380256.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu] Length = 288 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 15/178 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + S D L+G+ N S F E LS++ D+D+FK N Sbjct: 112 QRLFEAHATLMRSSARDGLTGVYNRSHFNDHFHLLFLQARRQGEPLSLLMVDVDHFKAYN 171 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD + +++ L V P V R GGEEFA + + A ++A + R+ Sbjct: 172 DTFGHVKGDACLIAVANALTGVVRRPADLVARYGGEEFAIVLPNTGARGARLVAEEAREA 231 Query: 203 IENSQINISS-GPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256 + ++N+ + GP+ +++S G A E P +I AD ALY AK +GRNR++ Sbjct: 232 V--LRLNLPTRGPAGRVSVSVGCATASPDELSVP-DALIEAADAALYRAKDAGRNRIM 286 >gi|77459772|ref|YP_349279.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gi|77383775|gb|ABA75288.1| putative GGDEF domain regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 559 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 11/163 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+G+ N F L Y+ +++ D D+FK+IND GH GD V+ Sbjct: 389 LATHDGLTGVYNRRRFDEKLTEYSLLFRRTGRPFALLLIDADHFKRINDTHGHAAGDDVL 448 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGP 214 L+ + + + FV R GGEEFA ++ + I+A +R I + + GP Sbjct: 449 RQLAQLIQISIRSTDFVARYGGEEFAVLLPEIAKPDTPDIVAEKIRSAIAEADFP-AVGP 507 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + ++I +A+ P +T++ RADQ LY AK +GRN+V C Sbjct: 508 -VTVSIGVSLADPADNTP-TTLVKRADQQLYKAKAAGRNQVAC 548 >gi|300866275|ref|ZP_07110984.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] gi|300335723|emb|CBN56144.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] Length = 469 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 97/196 (49%), Gaps = 30/196 (15%) Query: 84 YISGSILKELFIS--YNRI--SQLSR----IDCLSGLLNH-------SAFISSLGSYNEK 128 Y++ I+ ++ +NR+ SQL R D L+G+ N S F+ +N+ Sbjct: 279 YVTKPIVGPELVNRIFNRLERSQLLRSRAETDALTGVANRRRSTQDLSQFLHLADRHNQS 338 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L D+D FKQ+ND +GH +GD V+ L + L+ FG V R GGEEF G + Sbjct: 339 LCFALLDLDCFKQVNDEYGHAMGDTVLRRLGELLLRTFGGQDVVARWGGEEFVVGMYGMA 398 Query: 189 EQEAAILANDLRKIIENSQINISS-------GPSIHITISAGIAERCHKEPISTIIYR-A 240 +++A K IE+ IN S ++ SAGIAE +YR A Sbjct: 399 KRDAI-------KSIEDVLINWRSEEFVDTDDRKFRVSFSAGIAEYPSDGNDLQALYRAA 451 Query: 241 DQALYVAKKSGRNRVV 256 D+ALY AK +GR+RV+ Sbjct: 452 DEALYRAKAAGRDRVM 467 >gi|200387621|ref|ZP_03214233.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604719|gb|EDZ03264.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 308 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 22/276 (7%) Query: 8 FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58 F IW H + + F + S+ +FI ++ F ANI F + L P Sbjct: 32 FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91 Query: 59 ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112 GL + + L +V I+I + Y + ++ +L ++ LS +D L+GL Sbjct: 92 NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151 Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 N + L + S ++ DID+FK ND++GH +GD+ + +S + + Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDTVRS 211 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226 V R GGEEF + Q+A A +R+ + + +I S+ ++T+S GIA Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + I I +AD+ALY AK GRN ++ D+ Sbjct: 272 LTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 306 >gi|323961999|gb|EGB57598.1| diguanylate cyclase domain-containing protein [Escherichia coli H489] Length = 564 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|289435261|ref|YP_003465133.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171505|emb|CBH28049.1| GGDEF domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 375 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 115/235 (48%), Gaps = 21/235 (8%) Query: 35 FSIFIATVI--FIANIFLF---YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89 FS FIA +I F A ++ F + G G E +VE L L S LL+ Y I Sbjct: 140 FSKFIALLILSFPAQLYYFINNFDGGRILQGFE--IVEYLFL---SFATGLLVFYACNYI 194 Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQI 142 K + +++ + D L+ L N F S +K LS+ DID+FK+I Sbjct: 195 DKSNLV-IQTLTETAMTDSLTNLPNMRFFTQQFAWIFNKSLKKKAPLSLFIIDIDHFKEI 253 Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND GH G+ V+A S L F R+GGEEFA +AA++A+ +R+ Sbjct: 254 NDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVDATQAALIADHIRE 313 Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IE+++ + S +TIS G+A C ++ ADQALY AK+SGRN++ Sbjct: 314 EIEHAKFPYTP-TSGQVTISIGVATANCSFSTTESLFEAADQALYQAKQSGRNQI 367 >gi|224372851|ref|YP_002607223.1| sensory box/ggdef domain protein [Nautilia profundicola AmH] gi|223589403|gb|ACM93139.1| sensory box/ggdef domain protein [Nautilia profundicola AmH] Length = 346 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 12/158 (7%) Query: 106 IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+ L N FI + Y SI+F DID FK+IND +GH GD+++ L Sbjct: 191 IDPLTKLYNRRHFIENFNYFIDLYERYKRPFSIIFLDIDNFKKINDTYGHQKGDEILINL 250 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 S ++ + R GGEE + EA +A LR+ I+ +I I S P + Sbjct: 251 SKHIMQMLRNTDLAFRYGGEEIVIILPETELYEAFQIAERLRQSIK-EKIQIKSKP---V 306 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G+ E + + I R D+A+Y AK++G+++V+ Sbjct: 307 TVSMGVGT-YKGEGMFSFIERVDEAVYRAKRAGKDKVI 343 >gi|195873713|ref|ZP_02698435.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632965|gb|EDX51419.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 308 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 75/277 (27%), Positives = 126/277 (45%), Gaps = 22/277 (7%) Query: 8 FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58 F IW H + + F + S+ +FI ++ F ANI F + L P Sbjct: 32 FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91 Query: 59 ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112 GL + + L +V I+I + Y + ++ +L ++ LS +D L+GL Sbjct: 92 NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151 Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 N + L + S ++ DID+FK ND++GH +GD+ + +S + + Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 211 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226 V R GGEEF + Q+A A +R+ + + +I S+ ++T+S GIA Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + I I +AD+ALY AK GRN ++ D+ Sbjct: 272 LTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMRT 307 >gi|156977361|ref|YP_001448267.1| diguanylate cyclase/phosphodiesterase [Vibrio harveyi ATCC BAA-1116] gi|156528955|gb|ABU74040.1| hypothetical protein VIBHAR_06147 [Vibrio harveyi ATCC BAA-1116] Length = 778 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 30/256 (11%) Query: 29 IYFSIFFSIFIA---TVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLL 82 ++ + S IA T+ I + Y+ L+P L+ L E N I + + Sbjct: 257 VWLELALSFGIASFCTITLIVLVLYRYV-LSPVSRLDKQLREIEANKRANIEKLDTDDEI 315 Query: 83 GYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFD 135 G +S + +EL Y++ +L+ D L+ L N F L +E++ +++ D Sbjct: 316 GRLSSRFFDMYEELNNVYHKTKRLAETDHLTQLANRHRFHELASQELAEPSEQIWVIYID 375 Query: 136 IDYFKQINDNFGHPVGDKVIAFLS-------DQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +D FK +ND +GH +GDK++ S + + +P F RL G+EF A L SS Sbjct: 376 LDNFKYVNDKYGHELGDKLLQVFSKHIRNACQKFTQQYNSPCFGARLSGDEF--AILLSS 433 Query: 189 EQEAA----ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243 QE + + A +L K I N + S+ S +T S GIA+ I+ ++ AD A Sbjct: 434 NQENSELPDLFAAELLKPINN--LTQSAKNSFPVTASVGIAQYPRDGGDIAKLLSSADAA 491 Query: 244 LYVAKKSGRNRVVCFS 259 +Y AK++G+N+ +S Sbjct: 492 MYQAKRAGKNQYAYYS 507 >gi|167039476|ref|YP_001662461.1| diguanylate cyclase [Thermoanaerobacter sp. X514] gi|300915421|ref|ZP_07132734.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter sp. X561] gi|307725198|ref|YP_003904949.1| GAF sensor-containing diguanylate cyclase [Thermoanaerobacter sp. X513] gi|166853716|gb|ABY92125.1| diguanylate cyclase [Thermoanaerobacter sp. X514] gi|300888481|gb|EFK83630.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter sp. X561] gi|307582259|gb|ADN55658.1| diguanylate cyclase with GAF sensor [Thermoanaerobacter sp. X513] Length = 554 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 10/172 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +++ S D L+ N F +L +E +S++ FD+D FK IND +GH Sbjct: 383 YYEVTKKSITDPLTKTYNRRYFNDALMENIMRADETSEPVSLIMFDLDNFKLINDTYGHL 442 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ ++ ++ + V R GGEEFA + ++A ++A +R + + I Sbjct: 443 VGDEVLKEVAKRIKNNVRSDDIVARFGGEEFAVILPKLTAEQAYMIAERIRNEVLSRPIR 502 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS-GRNRVVCFS 259 G I++TI+ G+A+ K + +I AD+ALY KS GRN++ + Sbjct: 503 TDKG-DIYVTITGGVADYPEKADSAEKLISHADRALYAGGKSKGRNKIAIYE 553 >gi|320332688|ref|YP_004169399.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] gi|319753977|gb|ADV65734.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] Length = 370 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 6/180 (3%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDI 136 I L+LG ++G + +R+ L+ D L+G N F +E ++ D+ Sbjct: 183 AIGLILGQLAGQTRLKALAQAHRLRSLAFTDALTGAYNRRQFELDFPRADEA-CLLLLDL 241 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK++ND GH VGD+V+ L V RLGGEEF +A +A Sbjct: 242 DHFKRVNDTHGHDVGDRVLQAFVTILREATRPGDDVYRLGGEEFVVLLRDCPPTKAVSVA 301 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E+S ++ P +T+S G+ + + RAD+ LY AK +GRNRV+ Sbjct: 302 ERIRAHVESSLALYAALPGPALTMSGGLVPVGEQA-----LRRADELLYQAKANGRNRVM 356 >gi|239996281|ref|ZP_04716805.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126] Length = 586 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 16/178 (8%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + ++ D L+ + N F + + + LS V FD+D+FK +ND++GHP GD Sbjct: 403 LREKAQTDSLTKVANRHYFTELASKALDRMSEQQDVLSFVIFDLDHFKSVNDSYGHPTGD 462 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 V+ + + + GRLGGEEF G +E++A +A +R I QI+ + Sbjct: 463 WVLKAVVNAVRKHCRKEDVFGRLGGEEFGLLLPGCNEKKAKEIAECMRNSIR--QIDTAE 520 Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF-----SDIEN 263 SG + I+ S GI+ K + AD+ALY +KK GRNRV F SD+ N Sbjct: 521 SGFTFDISASFGISSTASSKYQFEALYANADEALYGSKKHGRNRVSVFQVNGESDVGN 578 >gi|237749000|ref|ZP_04579480.1| GGDEF domain-containing protein [Oxalobacter formigenes OXCC13] gi|229380362|gb|EEO30453.1| GGDEF domain-containing protein [Oxalobacter formigenes OXCC13] Length = 1960 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 17/166 (10%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157 SR+D ++GLLN S S+ + + ++ DID FK +ND GH GD+VI Sbjct: 259 SRVDSMTGLLNKSTTEESVKTAIATATSDSIGVLMMIDIDLFKNVNDTLGHLAGDEVIMQ 318 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-----QEAAILANDLRKIIENSQINISS 212 ++ QL F F+GR+GG+EF + ++A L + ++ EN Q N + Sbjct: 319 IARQLRRTFRENDFIGRVGGDEFIVYMQDVKDTVFVYEKAKALCESVEQMFENHQQNYT- 377 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ITIS GI+ + + +AD ALY AK +GRN+ V + Sbjct: 378 -----ITISIGISNTEQANTYNELYRQADVALYNAKANGRNQSVFY 418 Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+G+ N AF SS+ N + IV DID FK IND +G GD+++ ++ Sbjct: 1541 DVLTGIYNMQAFYDRASSMMRNNPERQYYIVRLDIDRFKVINDLYGLEEGDRLLKTIAGL 1600 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 L GR+ G+ F A S E+ Sbjct: 1601 LSDRMKENAAYGRISGDIFCACVAYSREE 1629 >gi|209519830|ref|ZP_03268614.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160] gi|209499706|gb|EDZ99777.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160] Length = 778 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 30/177 (16%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFG 147 F+ +++++L+ D L+GL AF++ + ++S +F DID FK +ND FG Sbjct: 184 FLLESQLARLAATDPLTGLQTRRAFVTHAQERLDTLAAGARISAIFLDIDSFKSLNDRFG 243 Query: 148 HPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR--- 200 H VGD +V L D++ + G V R+GG EF A +L +DL Sbjct: 244 HAVGDHALFEVAQVLKDEVALYHG----VSRIGGGEF-----------AVLLDDDLSHAL 288 Query: 201 KIIENSQINISS--GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ E ++ I++ P H++ S G+AE E + ++ RA AL AK +GRNRV Sbjct: 289 RLAERMRVGIAAIKRPDGHLSASFGVAEHRRGESVMGLLDRAGVALLRAKHAGRNRV 345 >gi|91792096|ref|YP_561747.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91714098|gb|ABE54024.1| diguanylate cyclase [Shewanella denitrificans OS217] Length = 604 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 8/162 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R QL+ D L+ L N + + + +I+ FDID+FK++ND +GH VG Sbjct: 439 RFKQLALTDELTKLANRRHCYAKANTSLKHAIKHRIPFAIISFDIDHFKRVNDQWGHDVG 498 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKV+ ++ + +GR+GGEEF +++++A +A + + +Q Sbjct: 499 DKVLITMAGICTNLMRKSDIIGRVGGEEFLVVLPNANKEQALEIAERIVTSVAQAQWQHL 558 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + P TISAG+ ++ ++ ++ +ADQ LY AK +GRN Sbjct: 559 T-PDTPQTISAGVTSLTNETSLAQLLLKADQGLYSAKSAGRN 599 >gi|309388591|gb|ADO76471.1| diguanylate cyclase [Halanaerobium praevalens DSM 2228] Length = 359 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 12/164 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-YNEKL------SIVFFDIDYFKQINDNFGHPV 150 ++ ++ D L+ N AF + S + EKL ++V D+D FK INDN+GH Sbjct: 197 QKLENIAHRDPLTKKYNRRAFDQEIKSIFKEKLQLQKKITLVLIDVDNFKDINDNYGHDK 256 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ +S +L + R GG+EFA + Q L R++ N+ Sbjct: 257 GDEVLVLISQRLETFMPAQSLIARWGGDEFAVISYEDEYQTQLYLEKYYREM-----ENL 311 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 S+ I+ SAG++ K+ + I R D+ LY +K+ G+ R Sbjct: 312 STELGFKISFSAGLSCLNQKDTVKKIFQRVDKLLYESKREGKAR 355 >gi|331663451|ref|ZP_08364361.1| cellulose synthesis regulatory protein [Escherichia coli TA143] gi|331059250|gb|EGI31227.1| cellulose synthesis regulatory protein [Escherichia coli TA143] Length = 558 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|296272695|ref|YP_003655326.1| response regulator receiver modulated diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296096869|gb|ADG92819.1| response regulator receiver modulated diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] Length = 290 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 103 LSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 LS D ++G+LN F + E L + DID FK IND FGH VGD VI + Sbjct: 130 LSSYDTMTGILNRRKFFELAQNKFEKEKENLFAIMIDIDKFKGINDKFGHHVGDIVIKTI 189 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + + GR+GGEEFA +E +R +I+ +NI + +I Sbjct: 190 TTCIEDILPKNSIFGRIGGEEFAIICNFENETNLFNYFEKIRNLIKEQSLNIENN-TIKF 248 Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 TIS GIA+ + I ++ RAD+ LY AK++GR++ + Sbjct: 249 TISIGIAQYNNTFLTIDDLLKRADKMLYKAKETGRDKTI 287 >gi|254501832|ref|ZP_05113983.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222437903|gb|EEE44582.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 405 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 13/195 (6%) Query: 72 VIISITISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFISSL----- 122 V I + ISL+ ISG+ + IS+ +++ + +R D L+G N F+ L Sbjct: 182 VNIHLMISLIFIAISGAF--SMAISFEQLARNNHEDARRDPLTGTFNRREFLRRLEGQLQ 239 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + ++ FD+D+FKQ+ND FGH GD+ + + + RLGGEEF Sbjct: 240 PATGAHFGLIQFDLDHFKQVNDRFGHVAGDEALVKVCQAIRHHLRRSDCFARLGGEEFGL 299 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-AD 241 +++A ++A +R+++EN + ITIS G+ + T +++ D Sbjct: 300 LLPNVGQEDAVVIAERIRRLVENQSYEFAPD-GFQITISGGMYHGTGESLTPTDLFKIVD 358 Query: 242 QALYVAKKSGRNRVV 256 LY +K +GRNR+ Sbjct: 359 TGLYTSKNAGRNRIT 373 >gi|17547862|ref|NP_521264.1| hypothetical protein RSc3143 [Ralstonia solanacearum GMI1000] gi|17430167|emb|CAD16852.1| putative signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum GMI1000] Length = 459 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 11/179 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-SYNE------KLSIVFFDIDYFK 140 ++ + LF ++ + QLS D L+G+ N S F L +++E S+V D+D+FK Sbjct: 271 TLYRRLFEAHVSLQQLSTHDALTGIYNRSYFNDQLPRAFDEARRRGRPFSLVMIDVDHFK 330 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 + ND FGH GD +A ++ L V F+ R GGEEFA + ++A +LA Sbjct: 331 RYNDTFGHLKGDGCLAAVASALEGVMPRHTGFIARYGGEEFALVLPDAGPRDALLLAESA 390 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 R+ + + ++ + PS ++TISAG A S ++ AD LY AK +GRN VV Sbjct: 391 REAVLHLRLE-APAPSRYVTISAGCATAAPGSAASLDALVAAADATLYRAKAAGRNLVV 448 >gi|283850594|ref|ZP_06367882.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] gi|283574165|gb|EFC22137.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] Length = 579 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 93/199 (46%), Gaps = 19/199 (9%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 LVENL + T L +EL ++ LS D L+GL N ++ + Sbjct: 378 LVENLEEKVRQRTQEL------AQTNRELDHKNQALAVLSLTDRLTGLCNRRKIDQAVRA 431 Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 Y S V D+D FK IND FGH GD+V+ ++D L+ + VGR GG Sbjct: 432 EWRRAKRYGTPFSAVMIDLDNFKDINDRFGHGKGDEVLVRVADILIAMTRETDTVGRWGG 491 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTI 236 EEF + + A LA ++R+ I ++ PSI +T S G+A I Sbjct: 492 EEFLLICPQTGLRAAMSLAENIRQEIAATEF-----PSIGGLTASFGLAAFSGDADPRQI 546 Query: 237 IYRADQALYVAKKSGRNRV 255 + RAD ALY AK GRNR+ Sbjct: 547 VDRADAALYQAKAKGRNRI 565 >gi|270158442|ref|ZP_06187099.1| sensor histidine kinase [Legionella longbeachae D-4968] gi|269990467|gb|EEZ96721.1| sensor histidine kinase [Legionella longbeachae D-4968] Length = 721 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S++ D+D+FK+IND +GH GD + L L R GGEEF A + Sbjct: 568 ISLLMLDLDHFKKINDTYGHDAGDVALKELGKILQEDIRVGDIAARYGGEEFIVAFYNTD 627 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVA 247 E+ A +R+ + Q+ + P IT+S G+A + +I AD+ALY A Sbjct: 628 EKTIKTRAESIREAVSRLQVKYGAQPVGPITVSIGVAVYPTDGRNTNELIESADKALYFA 687 Query: 248 KKSGRNRVVCFSDIEN 263 K +G+NR+V +S+I+N Sbjct: 688 KTNGKNRIVLYSEIDN 703 >gi|209886481|ref|YP_002290338.1| putative diguanylate cyclase [Oligotropha carboxidovorans OM5] gi|209874677|gb|ACI94473.1| putative diguanylate cyclase [Oligotropha carboxidovorans OM5] Length = 352 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 101 SQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 + ++ D L+ L N A + LS++ DID+FK+ ND +GH VGD+ Sbjct: 176 EERAKTDTLTSLPNRRALEEFFRAAQMRAMEVEDPLSLLMLDIDHFKKFNDTYGHNVGDQ 235 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 VI ++ L R GGEE A G+ +A +R+ + + S+ Sbjct: 236 VIRLIASVLRERVRENDLPARYGGEELIAVLPGADLATCRAVAERIRETVAGCHLTRRST 295 Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 G S+ I++S G+A+ E ++++I R D+ALY AK SGRN V+ D+ + C Sbjct: 296 GESLPDISVSVGVAQFRPGESMASLIERCDRALYKAKASGRNCVITEDDLTDADC 350 >gi|149907569|ref|ZP_01896316.1| hypothetical GGDEF domain family protein [Moritella sp. PE36] gi|149809239|gb|EDM69168.1| hypothetical GGDEF domain family protein [Moritella sp. PE36] Length = 505 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 9/159 (5%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ + N +A Y +I DID+FK IND+FGH GDK + + Sbjct: 345 LDSLTQVYNRTALDERFKLEFKRWQRYKTNTTIAMVDIDHFKNINDSFGHIAGDKALKIV 404 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L + F+ R GGEEF + E ++ + LR I+N G I I Sbjct: 405 ARALQKSIKSSDFIARFGGEEFVLLLADVAPSEIQVMLDKLRNTIKNIPFRF-KGKQISI 463 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TIS G+ + I RAD+ALY AK SGR++V+ Sbjct: 464 TISIGVTQFSLDDNEIVDPFERADKALYEAKSSGRDKVI 502 >gi|146338270|ref|YP_001203318.1| putative diguanylate cyclase/phosphodiesterase (EAL) [Bradyrhizobium sp. ORS278] gi|146191076|emb|CAL75081.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) [Bradyrhizobium sp. ORS278] Length = 789 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 12/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RIS L+R D L+ L N +F + + E +++F D+D FKQ+ND GHP G Sbjct: 344 RISHLARYDELTTLPNRVSFRDEIERLLKIPQRHGELSALLFVDLDRFKQVNDTLGHPCG 403 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQIN 209 D+++ +S++L + FV R GG+EF S +AA+LA R+I++ S+ Sbjct: 404 DQLLCAVSERLRDMLRPEDFVARFGGDEFVVFQRNIRSNDDAAVLA---RRIVDQLSERY 460 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I S GIA T++ AD ALY AK GR F D Sbjct: 461 KIDNHLVEIGASVGIAMTAPGISADTLLKNADMALYRAKAEGRGTFCFFRD 511 >gi|153800884|ref|ZP_01955470.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3] gi|124123594|gb|EAY42337.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3] Length = 627 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ + DID+FK+IND FGH Sbjct: 458 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 517 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 518 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 570 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 571 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTTME 622 >gi|145224956|ref|YP_001135634.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Mycobacterium gilvum PYR-GCK] gi|145217442|gb|ABP46846.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Mycobacterium gilvum PYR-GCK] Length = 612 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 14/190 (7%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE----KLSIV 132 I+ L + + E + Y L+ D L+GL N A +S L G E +S + Sbjct: 158 IASLFAQVQARVEAETQLRY-----LAEHDDLTGLNNRRALLSHLDGRLAEGQPGPVSAL 212 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 FFD+D K IND GH GD I L+++L + RLGG+EF G + EA Sbjct: 213 FFDLDRLKAINDYLGHTAGDWFIRVLAERLREGADPRALIARLGGDEFVVVPAGPMDGEA 272 Query: 193 A-ILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250 A LA+ L+ ++ +++I G + T+S G+A ++ S ++ RADQA+ AK S Sbjct: 273 AESLAHQLQSTLKE-RVSI-DGEMLTRTVSIGVAVGIPGQDTTSDLLRRADQAVLTAKNS 330 Query: 251 GRNRVVCFSD 260 G NRV F++ Sbjct: 331 GGNRVTVFTE 340 >gi|302344708|ref|YP_003809237.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075] gi|301641321|gb|ADK86643.1| diguanylate cyclase [Desulfarculus baarsii DSM 2075] Length = 691 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 12/179 (6%) Query: 91 KELFISYN--RISQLSRIDCLSGLLNHSAFISSL------GSY-NEKLSIVFFDIDYFKQ 141 ++L ++ N R+S ++ D L+GL F+ +L Y + LS++ D D+FK Sbjct: 502 EQLGVAVNSLRLSHMASTDGLTGLFTRRHFVDTLEHELRVARYLHYPLSMLLLDADHFKN 561 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND GH GD+V+ L+ +V + R+GGEEFA + +A LA +R+ Sbjct: 562 VNDTHGHQAGDEVLRALARVIVENIRSSDTCARIGGEEFAVLLPRCQQDQAFKLAEKIRR 621 Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258 + + I + I +TIS G+A EP I +I RAD A+Y +K +GRNR + Sbjct: 622 KVGELTV-IYNEKQIKLTISLGVASFNPGDEPSIEEVIRRADLAMYQSKAAGRNRTTVW 679 >gi|284921863|emb|CBG34938.1| cellulose synthesis regulatory protein (signal transduction protein) [Escherichia coli 042] Length = 564 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|195952621|ref|YP_002120911.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1] gi|195932233|gb|ACG56933.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1] Length = 640 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 9/195 (4%) Query: 74 ISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSY 125 +++ I + GY+ +I + E + ++ + S D L+G N +++ Sbjct: 437 VNMMIPYIKGYLDEAIPVMESKLLMEKLKEQSIKDQLTGFYNRRYIEEAIDPILNNAKRK 496 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 E ++ D+D+FK+IND +GH VGD V+ ++ + R GGEEF Sbjct: 497 GETTGVLMIDVDHFKEINDKYGHDVGDMVLKTVAQTIKESIRESDIPIRFGGEEFMVLLT 556 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQAL 244 ++ +A +RK +EN I + + +I TIS G++E + + AD AL Sbjct: 557 NVKPGDSESVAEKIRKNMENRVIKLPNNTTIKRTISIGVSEIPTDTDKFWQAVKFADVAL 616 Query: 245 YVAKKSGRNRVVCFS 259 Y AK+SGRN+VV + Sbjct: 617 YKAKESGRNKVVRYQ 631 >gi|153211963|ref|ZP_01947810.1| sensory box/GGDEF family protein [Vibrio cholerae 1587] gi|124117039|gb|EAY35859.1| sensory box/GGDEF family protein [Vibrio cholerae 1587] Length = 642 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ + DID+FK+IND FGH Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTTME 637 >gi|121726400|ref|ZP_01679674.1| sensory box/GGDEF family protein [Vibrio cholerae V52] gi|121631148|gb|EAX63523.1| sensory box/GGDEF family protein [Vibrio cholerae V52] Length = 321 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N + + LS + DID FK IND FGH G Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ FL+ V F GR+GGEEF + + A LA +R+ + Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264 Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 P + HI + AG++ H + I+ I R+DQALY AK++GRNR + Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316 >gi|170728152|ref|YP_001762178.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169813499|gb|ACA88083.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 659 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 7/178 (3%) Query: 85 ISGSILKELFISYNRIS--QLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDID 137 +S + L L+I+ RI +++ D L+ L N L S N+ LS + DID Sbjct: 439 VSLTSLAALWINRRRIRWGKIANTDSLTNLYNRRYLSHKLLSLNKPDNDAPLSCILLDID 498 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK +ND++GH VGD+V+ ++ + R+GGEEF ++ Q+A+ +A Sbjct: 499 LFKVVNDSYGHIVGDEVLVKVATLFINNVREKDICARIGGEEFMILLPNTNLQQASDIAE 558 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 DLR IE+ G IT S G+ E ++ S + D LY AK++GRNRV Sbjct: 559 DLRLKIESLHFASLKGEPFTITSSFGVVEAGKEQSFSELSNAVDLLLYTAKQNGRNRV 616 >gi|146293765|ref|YP_001184189.1| diguanylate cyclase [Shewanella putrefaciens CN-32] gi|145565455|gb|ABP76390.1| diguanylate cyclase [Shewanella putrefaciens CN-32] Length = 578 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 15/176 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++ D L+G N + + + LSIV FDID FKQ ND +GH +G Sbjct: 400 QVKAMAETDGLTGCYNRRYLDNQIEKELLYANDHQVPLSIVMFDIDNFKQFNDRYGHVIG 459 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D+ + + + + P + R GGEEF ++A +A LR+ I + +I Sbjct: 460 DQCLKQIVNATKSILQRPTDTLARYGGEEFMILLPSRHLEDAYKIAEHLRETIIDLKIPH 519 Query: 211 SSGPSIHI-TISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVCFSDI 261 P I TISAGI C P +++I RAD+ALY AK +GRNR +I Sbjct: 520 EDSPHAGIVTISAGIT--CWHPPERLDTNSLIKRADEALYHAKLTGRNRTETLINI 573 >gi|150388986|ref|YP_001319035.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF] gi|149948848|gb|ABR47376.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF] Length = 512 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 19/162 (11%) Query: 104 SRIDCLSGLLN-------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ D L+GL N + AF + + +I+ DID FK++ND +GHPVGD+V+ Sbjct: 352 AKYDGLTGLFNRHTFDTIYEAFYNGIKHEKMDFAILMVDIDNFKEVNDQYGHPVGDEVLR 411 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + + R GGEE GS+ EA +A +RK IE+ +I I Sbjct: 412 KMARAMQQSLRDHDVIARYGGEEMIIILKGSNPPEAKGIAERIRKSIESLEIQ-----GI 466 Query: 217 HITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNR 254 IT+S G+A + K+ + TI AD+ LY AK+ G+N+ Sbjct: 467 RITVSIGMANFRYDSYEKDELITI---ADKCLYEAKRKGKNQ 505 >gi|262370899|ref|ZP_06064223.1| LOW QUALITY PROTEIN: GGDEF family protein [Acinetobacter johnsonii SH046] gi|262314261|gb|EEY95304.1| LOW QUALITY PROTEIN: GGDEF family protein [Acinetobacter johnsonii SH046] Length = 531 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 9/173 (5%) Query: 99 RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 R+ ++ +D L+G+ N A +I L + + S ++ DID+FKQ+ND +GH +GD Sbjct: 356 RLKNIAHLDSLTGVANRYALNEYIKLLENQPTQFSETCLMVIDIDHFKQVNDVYGHLMGD 415 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINIS 211 +VI F++++L T + R GG+EF + A +A +R +I E ++ Sbjct: 416 QVIQFVAEKLKENIRTSDLLVRYGGDEFIVLIENVGMERALKIAEKIRSEIYEAKSVDNV 475 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 P + ++IS G+A ++ +AD+AL+ AK+ G+N+VV +S E N Sbjct: 476 RCPDLKVSISIGVA--IGATSWMALLEKADRALFQAKEQGKNKVVAYSVDEVN 526 >gi|229514994|ref|ZP_04404454.1| GGDEF family protein [Vibrio cholerae TMA 21] gi|229347699|gb|EEO12658.1| GGDEF family protein [Vibrio cholerae TMA 21] Length = 353 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152 N + L+ D L+G N + +S + L ++ D+D+FK IND FGH GD Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGD 232 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + V G R+GGEEF S ++A + LR I+ SQ + Sbjct: 233 KVLIETTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289 Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + +TIS G+ E + ++ ++ AD LY AKK+GRN+V F N Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHASTN 342 >gi|229075753|ref|ZP_04208730.1| Sensory box/GGDEF family protein [Bacillus cereus Rock4-18] gi|228707305|gb|EEL59501.1| Sensory box/GGDEF family protein [Bacillus cereus Rock4-18] Length = 430 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L +EK++I+ FD+D FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEVEWDNVIRNDEKMAIILFDVDNFKTVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 425 >gi|218705448|ref|YP_002412967.1| putative diguanylate cyclase [Escherichia coli UMN026] gi|218432545|emb|CAR13438.1| putative diguanylate cyclase [Escherichia coli UMN026] Length = 564 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|170679992|ref|YP_001743770.1| diguanylate cyclase [Escherichia coli SMS-3-5] gi|170517710|gb|ACB15888.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli SMS-3-5] Length = 349 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 NR+ L+ D L+G+ N A S L + +++ D+D+FK+ ND +GHP GD+ Sbjct: 185 NRLDALAHRDPLTGIANRRAMNSILHDAIDNGGSFALIMLDVDFFKRYNDTYGHPAGDRC 244 Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 + ++D L + V R GGEEF ++ EA +A +++ ++ + I + +S Sbjct: 245 LIQVADALQRSTRQSEDVVVRYGGEEFVIILFNATLPEAETVAARVKQELKLAAIPHQAS 304 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S GI + II AD ALY AK+SGRNR Sbjct: 305 AVNAFVTVSQGITCSAPAKTAEQIISDADAALYRAKESGRNR 346 >gi|166712660|ref|ZP_02243867.1| hypothetical protein Xoryp_14695 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 324 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 15/194 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124 + +S +++++ ++L +GY +++ + + +L+ +D L+GL N +L Sbjct: 133 QGVSTIVVTL-VTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTDQI 188 Query: 125 -----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 +N S++ D+D+FK++ND +GH GD ++ L+ L P V R GGEE Sbjct: 189 DQHQPHNRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVRDPYQVFRFGGEE 248 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F S E LRK+I N GP IT+S G A + R Sbjct: 249 FVVLLRAGSLAELEAATERLRKVIRNRL----RGPGGRITVSLGAARHDGETHWQDWFSR 304 Query: 240 ADQALYVAKKSGRN 253 AD ALY+AK GR+ Sbjct: 305 ADAALYLAKNGGRD 318 >gi|327485915|gb|AEA80321.1| sensory box/GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 308 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N + + LS + DID FK IND FGH G Sbjct: 139 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 198 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ FL+ V F GR+GGEEF + + A LA +R+ + Sbjct: 199 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 251 Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 P + HI + AG++ H + I+ I R+DQALY AK++GRNR + Sbjct: 252 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303 >gi|293405438|ref|ZP_06649430.1| cellulose synthesis regulatory protein [Escherichia coli FVEC1412] gi|298381082|ref|ZP_06990681.1| cellulose synthesis regulatory protein [Escherichia coli FVEC1302] gi|291427646|gb|EFF00673.1| cellulose synthesis regulatory protein [Escherichia coli FVEC1412] gi|298278524|gb|EFI20038.1| cellulose synthesis regulatory protein [Escherichia coli FVEC1302] Length = 569 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 376 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 435 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 436 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 495 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 496 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 555 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 556 KQAGRNRV 563 >gi|262275981|ref|ZP_06053790.1| hypothetical protein VHA_002964 [Grimontia hollisae CIP 101886] gi|262219789|gb|EEY71105.1| hypothetical protein VHA_002964 [Grimontia hollisae CIP 101886] Length = 294 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 99/198 (50%), Gaps = 15/198 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------ 120 E +L + + L+ + S L + R+ + + +D L+G+ N ++ Sbjct: 78 ETFALYWLQTVVGFLVIWAQTSKLHMML----RLYRHATLDPLTGIYNRRMLLTLAKRDF 133 Query: 121 -SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 + ++ S++ D+D FK+IND +GH GD V+ + + GR GGEE Sbjct: 134 ENTRIHSRPYSVLLMDLDKFKRINDRYGHHAGDLVLQAFTHAVQETQRKSDIFGRFGGEE 193 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINIS--SGPSIHITISAGIA-ERCHKEPISTI 236 F SE A ++A+ + + + +I + S P + +T S GI+ R + +S+I Sbjct: 194 FILFLPKCSEDNAQLVADRIMTRVRDMEIKVEGLSNP-LKVTTSIGISTSRNQNDDLSSI 252 Query: 237 IYRADQALYVAKKSGRNR 254 + +ADQALY+AK +GR+R Sbjct: 253 LTQADQALYIAKNAGRDR 270 >gi|254509795|ref|ZP_05121862.1| response regulator receiver modulated diguanylate cyclase [Rhodobacteraceae bacterium KLH11] gi|221533506|gb|EEE36494.1| response regulator receiver modulated diguanylate cyclase [Rhodobacteraceae bacterium KLH11] Length = 466 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 16/166 (9%) Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+GL N + +L + +++ D+D+FK IND FGH GD V+ Sbjct: 294 IDPLTGLHNRRYAMRALDQIAHQALETGRGFAVMLADLDHFKAINDRFGHAAGDLVLTET 353 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIH 217 + +L FV R+GGEEF ++ Q+A A+ + I + N+ SI Sbjct: 354 ARRLRTATNQSGFVARIGGEEFMIGLPDTAPQQALRQADVICDSICQTPFNLPDHATSIP 413 Query: 218 ITISAGI--------AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +TIS G+ R P++ +I AD+ALY AKK+GRN+V Sbjct: 414 VTISVGVKLCTPPDLTWRDEASPVNRLIRSADKALYAAKKAGRNQV 459 >gi|261210734|ref|ZP_05925026.1| GGDEF family protein [Vibrio sp. RC341] gi|260840219|gb|EEX66799.1| GGDEF family protein [Vibrio sp. RC341] Length = 489 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 9/161 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +QL+ D ++GLLN L +++ L+I DID FKQIND +GH +GDKVI ++ Sbjct: 332 AQLAARDPMTGLLNRRGMEGFLKGKRHSQYLAIAVLDIDDFKQINDTYGHDMGDKVICYI 391 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +Q+ + V R GGEEF EQ I+ + ++S + G Sbjct: 392 GEQIETHIRSSDAVARFGGEEFVVYVTAKEQEQIQKIMQRIFDAVCQDSTHILEQG---- 447 Query: 218 ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 TIS GI K+ +S AD+ LYVAK SG+N++V Sbjct: 448 FTISGGIEIVESKKALSFEEQFKAADEKLYVAKTSGKNQLV 488 >gi|229515487|ref|ZP_04404946.1| GGDEF family protein [Vibrio cholerae TMA 21] gi|229347256|gb|EEO12216.1| GGDEF family protein [Vibrio cholerae TMA 21] Length = 489 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%) Query: 76 ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSI 131 + ++L+ +++G +L L ++R +QL+ D ++GLLN S L +++ L+I Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190 DID FKQIND +GH +GD+VI ++ +Q+ + V R GGEEF EQ Sbjct: 365 AVLDIDDFKQINDAYGHGMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248 I+ + S + + G T+S GI E + AD+ LYVAK Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480 Query: 249 KSGRNRVV 256 SG+N++V Sbjct: 481 TSGKNQLV 488 >gi|158336701|ref|YP_001517875.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158306942|gb|ABW28559.1| diguanylate cyclase (GGDEF domain), putative [Acaryochloris marina MBIC11017] Length = 368 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 13/178 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFFDIDYFKQIN 143 K+L + R++ L+ +D L+ L N AF +L EK L+++ DIDYFK N Sbjct: 172 KQLEEANKRLTYLASVDELTQLPNRRAFTEALNREWRRMAREKSSLALIMIDIDYFKVYN 231 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GHPVGD + ++ + P R GGEEFA ++ A +A ++R Sbjct: 232 DTYGHPVGDSCLFQVARVIHTCVRRPADLPSRYGGEEFAVILPNTTLSGAIHVAENMRLS 291 Query: 203 IENSQI---NISSGP--SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ I N ++GP S+ + +++ I + E + ++ ADQALY AK GRNRV Sbjct: 292 VQRLMIPHKNSANGPYVSLSLGVASVIPDIQEMESETPLLLAADQALYKAKAEGRNRV 349 >gi|110642061|ref|YP_669791.1| hypothetical protein ECP_1889 [Escherichia coli 536] gi|110343653|gb|ABG69890.1| hypothetical protein YedQ [Escherichia coli 536] Length = 564 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ LL Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|333004063|gb|EGK23597.1| cellulose synthesis regulatory protein [Shigella flexneri K-272] gi|333017836|gb|EGK37143.1| cellulose synthesis regulatory protein [Shigella flexneri K-227] Length = 558 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ LL Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|229522266|ref|ZP_04411682.1| sensory box/GGDEF family protein [Vibrio cholerae TM 11079-80] gi|229340251|gb|EEO05257.1| sensory box/GGDEF family protein [Vibrio cholerae TM 11079-80] Length = 642 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ + DID+FK+IND FGH Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTTME 637 >gi|204926950|ref|ZP_03218152.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323615|gb|EDZ08810.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 308 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 124/276 (44%), Gaps = 22/276 (7%) Query: 8 FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58 F IW H + + F + S+ +FI ++ F ANI F + L P Sbjct: 32 FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 91 Query: 59 ----YGLE--YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112 GL Y+LV + + I I + ++ +L ++ LS +D L+GL Sbjct: 92 NGNEQGLRILYLLVLPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 151 Query: 113 LNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 N + L + S ++ DID+FK ND++GH +GD+ + +S + + Sbjct: 152 YNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 211 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIHITISAGIAE 226 V R GGEEF + Q+A A +R+ + + +I + + ++T+S GIA Sbjct: 212 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 271 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + I I +AD+ALY AK GRN ++ D+ Sbjct: 272 LTDRN-IGNAIEKADKALYEAKHLGRNHILVSDDMR 306 >gi|169826288|ref|YP_001696446.1| transmembrane protein [Lysinibacillus sphaericus C3-41] gi|168990776|gb|ACA38316.1| probable transmembrane protein [Lysinibacillus sphaericus C3-41] Length = 520 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 10/157 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 S +D L+G+ N + L + E +I+ D+D+FK +ND +GH VGDKV+ FL+ Sbjct: 363 STVDPLTGVTNRRTMDAMLAEWFENRVPHAIILLDLDHFKSVNDTYGHAVGDKVLQFLAK 422 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 + V R GGEEF ++ EA +A LR + + S +T+ Sbjct: 423 HMQSVAREGDVCCRYGGEEFVMLLPNTTVIEAEQVAEQLRGNLAET----DSPCGRPVTL 478 Query: 221 SAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 SAGIA P T+I AD ALY AK++GRN+V Sbjct: 479 SAGIALYPEMAATP-ETLIEAADGALYEAKQAGRNQV 514 >gi|149184365|ref|ZP_01862683.1| response regulator [Erythrobacter sp. SD-21] gi|148831685|gb|EDL50118.1| response regulator [Erythrobacter sp. SD-21] Length = 209 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 6/155 (3%) Query: 107 DCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSD 160 D L+GL N G + ++ D+D FK IND FGH GD+V+ + + + Sbjct: 51 DPLTGLYNRRKLFEERDDGQEGQLRQVLMIDLDRFKSINDRFGHAAGDRVLVATASAIRN 110 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L + GT RLGGEEF A ++A +A +LR+ I ++ S S + Sbjct: 111 CLERMDGTSDLAFRLGGEEFVAILDSEDFEKARSIAEELRRDIARIALDESHTGSFETSA 170 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E + +++RAD A Y AK GRNRV Sbjct: 171 SIGLASWHPGEKLDDVLHRADAACYKAKNEGRNRV 205 >gi|229542030|ref|ZP_04431090.1| diguanylate cyclase [Bacillus coagulans 36D1] gi|229326450|gb|EEN92125.1| diguanylate cyclase [Bacillus coagulans 36D1] Length = 346 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 12/158 (7%) Query: 107 DCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N A++ + + +K S++FFDIDYFKQ+ND FGH GD+V+ Sbjct: 193 DMLTGIANRRQVQAWLDAAVKHADKTGTSFSVIFFDIDYFKQVNDQFGHQTGDEVLKEFV 252 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V ++GR GGEEF Q A +L + ++ S S G + ++ Sbjct: 253 RLSSRVISANDYIGRWGGEEFIIITKDELPQ-----AEELAEYLKASISRHSFGHAGKLS 307 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S G+ + TI+ R D+ LY +K GRNR+ Sbjct: 308 ASFGVTAYTPGDTAETIVRRVDEGLYKSKGQGRNRITV 345 >gi|37675986|ref|NP_936382.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|37200526|dbj|BAC96352.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 451 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 12/166 (7%) Query: 96 SYNRISQLSRI------DCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNF 146 S R QL + D L+GL N F +L + + +++ D D FK IND F Sbjct: 289 SKTRKQQLDEVSSEVIKDELTGLHNRKIFNDTLFKDTLEDSQYTVIAIDGDGFKNINDTF 348 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH VGD+VI + + F F+ R GG+EF A ++A+ L L++ ++NS Sbjct: 349 GHHVGDEVICQVGKSMKATFRRGDFLIRTGGDEFLAILPDCDHRKASELVGKLKQHLKNS 408 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 + + I +SAG+A R E + ++ +AD+ALY K+S R Sbjct: 409 TLPY---KDLTIAVSAGVATRAQGETLQELMMQADEALYKVKESRR 451 >gi|320158129|ref|YP_004190507.1| putative two-component response regulator and GGDEF family protein YeaJ [Vibrio vulnificus MO6-24/O] gi|319933441|gb|ADV88304.1| putative two-component response regulator and GGDEF family protein YeaJ [Vibrio vulnificus MO6-24/O] Length = 451 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 12/166 (7%) Query: 96 SYNRISQLSRI------DCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNF 146 S R QL + D L+GL N F +L + + +++ D D FK IND F Sbjct: 289 SKTRKQQLDEVSSEVIKDELTGLHNRKIFNDTLFKDTLEDSQYTVIAIDGDGFKNINDTF 348 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH VGD+VI + + F F+ R GG+EF A ++A+ L L++ ++NS Sbjct: 349 GHHVGDEVICQVGKSMKATFRRGDFLIRTGGDEFLAILPDCDHRKASELVGKLKQHLKNS 408 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 + + I +SAG+A R E + ++ +AD+ALY K+S R Sbjct: 409 TLPY---KDLTIAVSAGVATRAQGETLQELMMQADEALYKVKESRR 451 >gi|309779153|ref|ZP_07673917.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA] gi|308922074|gb|EFP67707.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA] Length = 448 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 8/172 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L + + S +R D L+G LN +L N L I F DID FK IND Sbjct: 276 QLRKALDMASASARHDLLTGALNRKGLEEALEREVARAARQNTALCIAFLDIDDFKSIND 335 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD ++ L+ + R GGEEF +S +E L++ + Sbjct: 336 THGHSFGDDALSHLAQVARESMRPQDTLARFGGEEFVILMPDTSLEEGVQTIVRLQRAL- 394 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ + IT SAG+AE EP I RAD+A+Y AK++G+N+VV Sbjct: 395 TQRFFVAGDTRLFITFSAGVAEVGKDEPPMAAIQRADRAMYQAKRAGKNKVV 446 >gi|300939121|ref|ZP_07153809.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] gi|300455962|gb|EFK19455.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] Length = 350 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 NR+ L+ D L+G+ N A S L + +++ D+D+FK+ ND +GHP GD+ Sbjct: 186 NRLDALAHRDPLTGIANRRAMNSILHDAIDNGGSFALIMLDVDFFKRYNDTYGHPAGDRC 245 Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 + ++D L + V R GGEEF ++ EA +A +++ ++ + I + +S Sbjct: 246 LIQVADALQRSTRQSEDVVVRYGGEEFVIILFNATLPEAETVAARVKQELKLAAIPHQAS 305 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S GI + II AD ALY AK+SGRNR Sbjct: 306 AVNAFVTVSQGITCSAPAKTAEQIISDADAALYRAKESGRNR 347 >gi|294010694|ref|YP_003544154.1| putative diguanylate cyclase [Sphingobium japonicum UT26S] gi|292674024|dbj|BAI95542.1| putative diguanylate cyclase [Sphingobium japonicum UT26S] Length = 395 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 119/273 (43%), Gaps = 33/273 (12%) Query: 8 FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVI-----------FIANIFLFYIGL- 55 LS+ C + L +F T + + S+ AT++ + A F F + L Sbjct: 110 LLSVLWCTLQGLLAF---TIISSGDLVLSVLSATLVMAMIGPICARNYAAPRFAFLLVLL 166 Query: 56 --TPFYGLEYILVENLSLVIISITISLLLGYIS------GSILKELFISYNRISQLSRID 107 PF E LVI+ IT LLG + S+L+ L + L+ D Sbjct: 167 CDIPFVTGAVTSAEPWLLVILPITPPFLLGAMQIIMTFHRSMLQTL-AAQAHARHLAEHD 225 Query: 108 CLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 L+G+LN +L +++++ D+D FK++ND FGH GD ++ ++ +L Sbjct: 226 WLTGVLNRQGMDQALSRIVPDAERQMALISIDLDGFKEVNDRFGHGAGDLLLTQVARRLR 285 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 G + R+GG+EF G + LA+ R I S+ +G S+ + A Sbjct: 286 DALGDDDLLARMGGDEFMVVVRGMVPDQVGPLAD--RLIAAISRHAYETGQSVPARVGAS 343 Query: 224 IAERCHKEPISTII---YRADQALYVAKKSGRN 253 I C E + + RAD+ALY AK +G+ Sbjct: 344 IGFACLPEDAANTVELRLRADEALYAAKDAGKG 376 >gi|268608109|ref|ZP_06141837.1| diguanylate cyclase/phosphodiesterase [Ruminococcus flavefaciens FD-1] Length = 503 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 98/203 (48%), Gaps = 20/203 (9%) Query: 70 SLVIISITISLL-LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 +LVII I ++++ + S KE+F +LS D L+ ++N AF + Sbjct: 309 ALVIILIALAMIWFLHKRESEEKEVF------ERLSTYDPLTHIMNRRAFDARAQKLLEK 362 Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 EK + +F DID+FKQ+ND +GH GD+++ S L FG R GG+EF Sbjct: 363 PKQEKYTFMFVDIDFFKQVNDRYGHEAGDRLLKEFSIALRNTFGRCGLTARYGGDEFVVL 422 Query: 184 ALGSSEQEAAILANDLRK-----IIENSQINISSGPSIHITISAGIAERCHK-EPISTII 237 G + E + ++LR II++ Q + H+ SAGIA + ++ Sbjct: 423 IKGKTRSEVNKMVDELRYTLGRIIIDDPQ--STEEERFHVHFSAGIAVYPDDARSFAQLL 480 Query: 238 YRADQALYVAKKSGRNRVVCFSD 260 AD ALY K++GRN F + Sbjct: 481 RCADDALYKVKEAGRNGYRWFGE 503 >gi|291614235|ref|YP_003524392.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1] gi|291584347|gb|ADE12005.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1] Length = 304 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 94/183 (51%), Gaps = 12/183 (6%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137 IS + + ++ RI LS D L+GL N F L + LS V FD+D Sbjct: 120 ISHHNITQRKLAEERIEFLSLHDPLTGLANRRHFNQFLNNAWRRSSRSRSLLSFVMFDLD 179 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILA 196 +FK ND GH GD+ + + L G P + R GGEEF G+ ++AA +A Sbjct: 180 HFKDYNDELGHLAGDECLIKVGQVLRAAAGRPGDLAVRYGGEEFGLLLEGTCLEDAAKIA 239 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNR 254 + +R+ + ++++ + IT+SAG+A + S I I AD+ALY AK+ GRNR Sbjct: 240 DAIRQNVH--ELDMRYRKTRLITVSAGVASVIPEGEQSEIFLIREADKALYRAKQQGRNR 297 Query: 255 VVC 257 VVC Sbjct: 298 VVC 300 >gi|170516892|gb|ACB15338.1| Dgc2 [Salmonella enterica] Length = 331 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%) Query: 32 SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80 S+ +FI ++ F ANI F + L P GL + + L +V I+I + Sbjct: 81 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNDNEQGLRILYLLALPMVGIAIQHVI 140 Query: 81 LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134 Y + ++ +L ++ LS +D L+GL N + L + S ++ Sbjct: 141 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 200 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND++GH +GD+ + +S + + V R GGEEF + Q+A Sbjct: 201 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 260 Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +R+ + + +I S+ ++T+S GIA + I I +AD+ALY AK GR Sbjct: 261 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 319 Query: 253 NRVVCFSDIE 262 N ++ D+ Sbjct: 320 NHILVSDDMR 329 >gi|114154899|sp|Q83KM9|YEDQ_SHIFL RecName: Full=Putative cellulose synthesis regulatory protein Length = 569 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ LL Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 376 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 435 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ Sbjct: 436 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 495 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 496 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 555 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 556 KQAGRNRV 563 >gi|75909377|ref|YP_323673.1| response regulator receiver modulated diguanylate cyclase [Anabaena variabilis ATCC 29413] gi|75703102|gb|ABA22778.1| response regulator receiver modulated diguanylate cyclase [Anabaena variabilis ATCC 29413] Length = 344 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 94/185 (50%), Gaps = 17/185 (9%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141 + K+L + + L+ +D L+GL N F + L + LS++ DIDYFK Sbjct: 160 VYKQLEAANMALQHLANVDGLTGLANRRRFDNYLNTQWINLVQKGAPLSLILCDIDYFKF 219 Query: 142 INDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 ND +GHP GD KV A LS + V R GGEEFA + + A +A+ Sbjct: 220 YNDQYGHPAGDICLQKVGAVLSYK---AQKHQDLVARYGGEEFAVIMPYTHAKGAIYVAH 276 Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 ++ + + QI + S S HIT+S G+A + S +I AD+ALY AK+SGR+R Sbjct: 277 TIQTSVRDLQITHDKSAVSQHITLSMGVATITPTWESSPSDLIAAADKALYKAKESGRDR 336 Query: 255 VVCFS 259 + + Sbjct: 337 ICQWK 341 >gi|88860137|ref|ZP_01134776.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Pseudoalteromonas tunicata D2] gi|88818131|gb|EAR27947.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Pseudoalteromonas tunicata D2] Length = 527 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 23/178 (12%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS +D L+G+ N AF ++ K+ ++ DIDYFK ND +GH GD Sbjct: 343 LEKLSLVDALTGISNRRAFDTTFELACQNAARSQSKVGLILCDIDYFKPYNDFYGHQKGD 402 Query: 153 KVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI 210 + + ++ L V + + R GGEEF SSE E ++A ++ I+ + ++ Sbjct: 403 ETLTAVAQGLAVTITRSTDLAARYGGEEFVVLLSHSSEDEIILIAEKIQIAIKTLAIVHQ 462 Query: 211 SSGPSIHITISAGIA---------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S + H+T+S G A +C K ++ +AD+ALY AKK+GRN+ VC S Sbjct: 463 KSAVADHVTLSMGTALLNFNNKKTGQCKKH----LLKQADEALYKAKKAGRNQ-VCHS 515 >gi|330720794|gb|EGG99007.1| diguanylate cyclase [gamma proteobacterium IMCC2047] Length = 633 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/189 (35%), Positives = 92/189 (48%), Gaps = 16/189 (8%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLS 130 T LLG I+ E ++ + ID L+G+ S F+ LG S E +S Sbjct: 447 TNQALLGEIAARRQLE-----EKLREQINIDSLTGVYGRSYFLQ-LGNLEFKRSQREGVS 500 Query: 131 I--VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 + V DID FK IND +GH GD V+ + GRLGGEEFA G Sbjct: 501 LFAVMIDIDLFKNINDTYGHSAGDAVLKRFALVCQECLREIDIFGRLGGEEFALVVAGVD 560 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 E EA + + +R +E +++ G I +T S G A E + I+ RAD+ALY A Sbjct: 561 ESEAYEICDRIRVSLEKTEVVTGEG-VIKLTASFGCAALEEGDEGLDAILSRADKALYEA 619 Query: 248 KKSGRNRVV 256 K+ GRN+VV Sbjct: 620 KEKGRNQVV 628 >gi|328543429|ref|YP_004303538.1| diguanylate cyclase with GGDEF motif; membrane protein [polymorphum gilvum SL003B-26A1] gi|326413174|gb|ADZ70237.1| Diguanylate cyclase with GGDEF motif; putative membrane protein [Polymorphum gilvum SL003B-26A1] Length = 390 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 106 IDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 ID L+G LN +F G S + + + + D+D+FK +ND GH GD+V+ S Sbjct: 222 IDYLTGALNRRSFELHAGQALRQSSSVRRAFLLLDLDHFKAVNDTLGHDAGDRVLVDFSR 281 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 ++ G GR+GG+EFA S A LA DL +++ + G +++ Sbjct: 282 EVRSRVGAGACFGRIGGDEFALLVPVSDALAAERLAEDLCRLVSGMTVASPDG-DWPLSV 340 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S GIA + + ++ AD+ALY AK +GR+RV Sbjct: 341 SIGIAMAGPADDLEQLMRWADRALYAAKAAGRSRV 375 >gi|325272364|ref|ZP_08138762.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas sp. TJI-51] gi|324102489|gb|EGB99937.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas sp. TJI-51] Length = 328 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 11/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ ID L+ N F ++ S E L+ + DID FKQIND++GH GD Sbjct: 163 LQRLATIDVLTQSSNRRHFFECAQAAFDSARENGTPLAFLLLDIDDFKQINDSYGHQEGD 222 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++D V GR+GGEEFAA G S + A +A L++ I+ +++ S Sbjct: 223 QVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCSAELAGQIAERLQRQIQ--RLSFSH 280 Query: 213 GPSIH-ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 G + +T+S G+ ++ + ++ RAD A+Y AK+ G+N++V Sbjct: 281 GAHTYGVTVSQGLTGLTAEDVALDSLYARADAAMYQAKRQGKNQIV 326 >gi|255321493|ref|ZP_05362651.1| ggdef domain protein [Campylobacter showae RM3277] gi|255301349|gb|EET80608.1| ggdef domain protein [Campylobacter showae RM3277] Length = 511 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 8/160 (5%) Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S+ D L+ A + LG N ++ FFDID+FK IND +GH GD +IA Sbjct: 350 SKEDFLTKTATKKALMEELGRLEIDFLQQNADYAVCFFDIDHFKNINDIYGHDAGDVIIA 409 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + L FV R GGEEF G ++ A+ +R +++NS+ + I Sbjct: 410 SVGKTLRGNSREVDFVARYGGEEFVVLLPGFDIAQSIEFADKVRDVLKNSKF-LYKDERI 468 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A R + + ++ +D+ LY AK++GR++V+ Sbjct: 469 SVTVSCGVAIRSQNQSQAAVLEASDKMLYQAKQNGRDQVM 508 >gi|148979908|ref|ZP_01815766.1| GGDEF family protein [Vibrionales bacterium SWAT-3] gi|145961512|gb|EDK26814.1| GGDEF family protein [Vibrionales bacterium SWAT-3] Length = 431 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 20/167 (11%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDK 153 S+++ D L+G+LN A L ++ KLS+++ DIDYFK +ND +GH +GD Sbjct: 271 SEMAHRDELTGILNRHAIRDWLKMQSQHVKQGHGKLSMLYLDIDYFKNVNDKYGHQMGDH 330 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209 ++ S + + R GGEEF LG ++++A + ++ + + Sbjct: 331 ILREFSMVVGSAISPTDKLVRWGGEEFIVFCPETDLGEAQRKAEKIL-----LLVSQHLW 385 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + P +T S G+AE +E ++ I RAD+ALY AK SGRN+V+ Sbjct: 386 VHGDP---LTCSIGVAE-MKQERVTETIARADEALYQAKHSGRNQVI 428 >gi|16763349|ref|NP_458966.1| hypothetical protein STY4904 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144827|ref|NP_808169.1| hypothetical protein t4594 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163690|ref|ZP_03349400.1| hypothetical protein Salmoneentericaenterica_28227 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428406|ref|ZP_03361156.1| hypothetical protein SentesTyphi_24409 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581134|ref|ZP_03362960.1| hypothetical protein SentesTyph_07976 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650122|ref|ZP_03380175.1| hypothetical protein SentesTy_24448 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213859941|ref|ZP_03385645.1| hypothetical protein SentesT_26751 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828940|ref|ZP_06546658.1| hypothetical protein Salmonellentericaenterica_20593 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25512874|pir||AF1071 probable membrane protein STY4904 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505658|emb|CAD03389.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29140466|gb|AAO72029.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 354 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 20/250 (8%) Query: 32 SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80 S+ +FI ++ F ANI F + L P GL + + L +V I+I + Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLALPMVGIAIQHVI 163 Query: 81 LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134 Y + ++ +L ++ LS +D L+GL N + L + S ++ Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND++GH +GD+ + +S + + V R GGEEF + Q+A Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283 Query: 195 LANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +R+ + + +I + + ++T+S GIA + I I +AD+ALY AK GR Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342 Query: 253 NRVVCFSDIE 262 N ++ D+ Sbjct: 343 NHILVSDDMR 352 >gi|220904032|ref|YP_002479344.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868331|gb|ACL48666.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 340 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 86/198 (43%), Gaps = 32/198 (16%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIND 144 EL ++ QLS ID L+GLLN AF+ E L S++ DID+FK +ND Sbjct: 134 ELTRLSHKYKQLSFIDPLTGLLNRRAFMVKAEKTLELLREEGLPASVLLADIDHFKAVND 193 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ S + R GGEEF G EA L +R +E Sbjct: 194 TYGHACGDEVLVRFSRCISSFLREQDLCCRYGGEEFVILLAGEELAEACELGEKIRSAVE 253 Query: 205 NS------------------QINISSGPSIHITISAGIAERCHK-------EPISTIIYR 239 + Q +I + IT+S G++ C + + I Sbjct: 254 QTVMDEAAMLYCIQARSREGQASIPHPVPLRITVSLGVSRLCRDNVSCSLLQQLEAGIAE 313 Query: 240 ADQALYVAKKSGRNRVVC 257 AD+ LY AK +GRN VVC Sbjct: 314 ADRCLYRAKYNGRNSVVC 331 >gi|221067871|ref|ZP_03543976.1| diguanylate cyclase [Comamonas testosteroni KF-1] gi|220712894|gb|EED68262.1| diguanylate cyclase [Comamonas testosteroni KF-1] Length = 400 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 30/248 (12%) Query: 28 MIYFSIFFSIF----IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83 +++ SI F+++ A + + L Y+ +P++ L V S + + ++ + Sbjct: 154 LLWLSIIFTVYNLTRPALIWLLGYTDLRYLPSSPYWILTLYSVLGFSFLFTVVMTAIAVK 213 Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136 + KE D L+ LLN +F ++ + SY ++++ DI Sbjct: 214 ETVDKLRKE-----------RDFDALTKLLNRRSFQEHAQRHLTDMRSY--PMAMLACDI 260 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND +GH GD V+ ++ L V R GGEEF + QEA +A Sbjct: 261 DHFKRINDTWGHERGDMVLQLVATTLQNNVREHDLVARFGGEEFVLLLASITLQEAEFIA 320 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV- 255 +R + + + + P +T+S G++ + ADQ LY AK +GR+RV Sbjct: 321 QRIRSDLGSKNTVLPNAPK--LTMSFGVSLITKPSQFEQAMKEADQLLYQAKNAGRDRVH 378 Query: 256 ---VCFSD 260 VC+ D Sbjct: 379 VSGVCYQD 386 >gi|262169201|ref|ZP_06036894.1| sensory box/GGDEF family protein [Vibrio cholerae RC27] gi|262022482|gb|EEY41190.1| sensory box/GGDEF family protein [Vibrio cholerae RC27] Length = 308 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N + + LS + DID FK IND FGH G Sbjct: 139 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 198 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ FL+ V F GR+GGEEF + + A LA +R+ + Sbjct: 199 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 251 Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 P + HI + AG++ H + I+ I R+DQALY AK++GRNR + Sbjct: 252 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303 >gi|114047368|ref|YP_737918.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113888810|gb|ABI42861.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 342 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 10/177 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 G ++ L +S + D L+ L N A+ I + S++ DID F Sbjct: 162 GQEVQNLKAEMENLSLAAMTDQLTSLHNRRAYEIAIQDHIHRAEEQQTRCSLLLIDIDRF 221 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K ND +GH VGDKV+A+++ L FV R GGEEF + +A +A L Sbjct: 222 KLFNDTYGHQVGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETL 281 Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 R+ I ++ I + IT+S G+A + T+ RAD+ALY AK GRN Sbjct: 282 RERISERRLAIGKDKKLSLGAITVSIGLASLQKGDDAETLFSRADKALYEAKSDGRN 338 >gi|312960670|ref|ZP_07775176.1| diguanylate cyclase [Pseudomonas fluorescens WH6] gi|311285196|gb|EFQ63771.1| diguanylate cyclase [Pseudomonas fluorescens WH6] Length = 388 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 12/176 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQ 141 + +++ ++N + ++ D L+GL+N AF + + + L + D+D+FKQ Sbjct: 214 LTRQMEHAHNISTHAAQTDELTGLMNRRAFFEHAQLLYAQCRHHQQPLCALMMDMDHFKQ 273 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GH GD+V+ + + F GRLGGEEFA ++ + A +A L K Sbjct: 274 INDTYGHQAGDQVLRQIGGVISASFRKADVYGRLGGEEFAVLLPNTTLETAREIAEQLIK 333 Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I + S P ++ S G+A + + ++ AD+ALY AK GRN+V Sbjct: 334 AIS----GLVSDPVHGLSASLGVAFTDAVDQDLHGLMNTADKALYRAKAQGRNQVA 385 >gi|262164495|ref|ZP_06032233.1| GGDEF family protein [Vibrio mimicus VM223] gi|262026875|gb|EEY45542.1| GGDEF family protein [Vibrio mimicus VM223] Length = 338 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGL N AF + +L + ++ DID+FK +ND +GH GD++I ++ +L Sbjct: 182 DSLSGLYNRRAFDGDMFTLLHAAHPVCLIMLDIDHFKALNDTYGHLFGDQIIRAIAKRLQ 241 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA S + A A +R+ IE + + SG S+ +IT S Sbjct: 242 SLCRDGVTAYRYGGEEFALITPNKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGNITAS 301 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E+ + + +++ RAD LY AK GRNRV+ Sbjct: 302 FGVVEKIDGDSLESLVGRADGLLYEAKNLGRNRVM 336 >gi|229528161|ref|ZP_04417552.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)] gi|229334523|gb|EEO00009.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)] Length = 321 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N + + LS + DID FK IND FGH G Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ FL+ V F GR+GGEEF + + A LA +R+ + Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264 Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 P + HI + AG++ H + I+ I R+DQALY AK++GRNR + Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316 >gi|56416328|ref|YP_153403.1| hypothetical protein SPA4365 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161617862|ref|YP_001591827.1| hypothetical protein SPAB_05726 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197365251|ref|YP_002144888.1| hypothetical protein SSPA4054 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205355274|ref|YP_002229075.1| hypothetical protein SG4381 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|238910713|ref|ZP_04654550.1| hypothetical protein SentesTe_06183 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|56130585|gb|AAV80091.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161367226|gb|ABX70994.1| hypothetical protein SPAB_05726 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197096728|emb|CAR62351.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205275055|emb|CAR40143.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|261249636|emb|CBG27506.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996913|gb|ACY91798.1| hypothetical protein STM14_5467 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301161034|emb|CBW20571.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320088987|emb|CBY98743.1| Uncharacterized membrane protein SSP1970 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|323132893|gb|ADX20323.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326630439|gb|EGE36782.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332991360|gb|AEF10343.1| hypothetical protein STMUK_4538 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 354 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%) Query: 32 SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80 S+ +FI ++ F ANI F + L P GL + + L +V I+I + Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLALPMVGIAIQHVI 163 Query: 81 LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134 Y + ++ +L ++ LS +D L+GL N + L + S ++ Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND++GH +GD+ + +S + + V R GGEEF + Q+A Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283 Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +R+ + + +I S+ ++T+S GIA + I I +AD+ALY AK GR Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342 Query: 253 NRVVCFSDIE 262 N ++ D+ Sbjct: 343 NHILVSDDMR 352 >gi|301029412|ref|ZP_07192506.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1] gi|299877716|gb|EFI85927.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1] Length = 251 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 58 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 117 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 118 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 177 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 EAA +A +R + ++ I+ +I I+ S G+ +E AD+ LY+A Sbjct: 178 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQFQSLADRRLYLA 237 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 238 KQAGRNRV 245 >gi|319762855|ref|YP_004126792.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|317117416|gb|ADU99904.1| diguanylate cyclase [Alicycliphilus denitrificans BC] Length = 561 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 21/178 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 + L ++ R+ +LS D L+GL N F L ++ L+++ D+D+FKQ N Sbjct: 378 EALTLANQRLEELSTTDSLTGLANRRHFDDILAKEWQRARRLRHPLALLMIDVDHFKQFN 437 Query: 144 DNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LAND 198 D +GH GD +V L +L+ T R GGEEF A + S + E A+ +A Sbjct: 438 DTYGHLAGDDCLRQVAQILKQRLLRGSDT---AARFGGEEF--AVITSMDLEGALHIAEL 492 Query: 199 LRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253 +R+ +EN +++ ++H+++S G++ + P +I AD+ALY AK++GRN Sbjct: 493 IRQDVENHPVSVDGVDAVHVSVSIGLSALVPDGSRSP-PQLISLADEALYRAKRAGRN 549 >gi|291280709|ref|YP_003497543.1| hypothetical protein DEFDS_P167 [Deferribacter desulfuricans SSM1] gi|290755411|dbj|BAI81787.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 420 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 8/166 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I + S ID L+ + N + F I +NE +S++ DID FK+INDN+GH VG Sbjct: 250 QIKRESEIDTLTNVFNRNTFDKYIVKAIDRFKKHNESVSVIMLDIDDFKKINDNYGHLVG 309 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ + L + R GGEEF + +A ++ + K + + + Sbjct: 310 DSVLRNFAAILKNSVRNSDLIFRYGGEEFIIVLPETKISQALSISERILKELNKTSFKLK 369 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S+ +T S G+ E ++ + T++ R D LY +K +G+N++ Sbjct: 370 KD-SLKVTASMGVTESKMEDNVETLLKRVDNYLYKSKATGKNKITS 414 >gi|207859680|ref|YP_002246331.1| hypothetical protein SEN4316 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206711483|emb|CAR35868.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 354 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%) Query: 32 SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80 S+ +FI ++ F ANI F + L P GL + + L +V I+I + Sbjct: 104 SLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNDNEQGLRILYLLALPMVGIAIQHVI 163 Query: 81 LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134 Y + ++ +L ++ LS +D L+GL N + L + S ++ Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND++GH +GD+ + +S + + V R GGEEF + Q+A Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283 Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +R+ + + +I S+ ++T+S GIA + I I +AD+ALY AK GR Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342 Query: 253 NRVVCFSDIE 262 N ++ D+ Sbjct: 343 NHILVSDDMR 352 >gi|207723947|ref|YP_002254345.1| signal transduction protein ggdef domain [Ralstonia solanacearum MolK2] gi|206589154|emb|CAQ36116.1| signal transduction protein ggdef domain [Ralstonia solanacearum MolK2] Length = 532 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 18/189 (9%) Query: 84 YISGSILKELFISYNRIS--QLSRI------DCLSGLLNHSAFISSL---GSYNEKLSIV 132 YI LK + R+S +++R+ D L+GL N +L ++ S+V Sbjct: 328 YIEAHRLKRALLRGTRLSSSRMARLNHEALTDPLTGLYNRRGVADALRLLAGRHQPFSVV 387 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK+IND GH VGD+V+ ++ + GR+GGEEF ++ + A Sbjct: 388 TLDVDHFKRINDRDGHDVGDQVLKHIAALIREQARHDDITGRIGGEEFILLLPDATPEGA 447 Query: 193 AILANDLRKIIENSQINISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250 A LR+ +E P+ +T+S G+A E + ++ +D ALY AK+S Sbjct: 448 FKTAERLRRAVE-----ARPNPTGQVVTVSLGMAHYPGASEEVDAVLKLSDLALYQAKRS 502 Query: 251 GRNRVVCFS 259 GRNR V + Sbjct: 503 GRNRTVLYQ 511 >gi|197334335|ref|YP_002156376.1| sensory box/ggdef family protein [Vibrio fischeri MJ11] gi|197315825|gb|ACH65272.1| sensory box/ggdef family protein [Vibrio fischeri MJ11] Length = 443 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 21/182 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142 LKE + + ++L+ D L+G N +A L ++++ S+++ DID+FK++ Sbjct: 262 LKEKNVEF---AELAHRDSLTGARNRNAVRDWLERMSQQVRWGKQTFSVIYIDIDFFKKV 318 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFG---TPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND+ GH GD + L + ++V+ G + F+ R GGEEF + + Q+A A + Sbjct: 319 NDDLGHQTGDDI---LREFVLVITGAIKSTDFLVRWGGEEFIVFSPNNDLQQAEEKAEHI 375 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 R+ +E+ + +T S G+AE E I+ +I RAD AL+ AK +GRN V S Sbjct: 376 RRTVEHHLWCHNE----RLTCSLGVAE-MKDERITEVIARADDALFKAKNAGRNNVKASS 430 Query: 260 DI 261 +I Sbjct: 431 NI 432 >gi|187920356|ref|YP_001889387.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] gi|187718794|gb|ACD20017.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] Length = 393 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 8/168 (4%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 ++ R+ Q S+ D L+GL N F + + +S++ FD+D+FK+IND +GH Sbjct: 213 THGRLLQESQTDYLTGLGNRRWFFEEGARVMREAGVSRPVSLLAFDLDHFKRINDRYGHE 272 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ + + G + R+GGEEFAA G A + + + + + ++ Sbjct: 273 TGDAVLKSFAAITRSLTGPEAMLARIGGEEFAALLPGHDSLRAEEVGDAIVRRFAGTVLH 332 Query: 210 ISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255 + I T+S G+A++ E ++ ++ ADQALY AK G NR+ Sbjct: 333 RINDVDIRATVSVGLAQQSASEAPTLADLLASADQALYRAKSLGGNRL 380 >gi|254492620|ref|ZP_05105791.1| ammonium transporter, putative [Methylophaga thiooxidans DMS010] gi|224462141|gb|EEF78419.1| ammonium transporter, putative [Methylophaga thiooxydans DMS010] Length = 1000 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 13/166 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLS---IVFFDIDYFKQINDNFGHPV 150 +R+ QL+ D L+GL N + F+S L + E L ++F D+D FK+INDN GH Sbjct: 566 DRLKQLAYNDPLTGLYNRTYFMSHLKQRIAYHQENLGSVVLMFLDLDQFKKINDNLGHKA 625 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQIN 209 GD+++ ++ +L V VGR GG+EF G+ + +A A D+ K++ S + Sbjct: 626 GDQLLCEVASRLKQVMRELDLVGRWGGDEFVIVMSGNITLSQAEHKAEDILKVMR-SPVK 684 Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 + G ++ + S G+A E P ++ +AD A+Y +K+SGRN Sbjct: 685 L-DGQTLVVPTSIGLAISENGQITP-EQLMQQADMAMYRSKQSGRN 728 >gi|254448560|ref|ZP_05062019.1| diguanylate cyclase [gamma proteobacterium HTCC5015] gi|198261749|gb|EDY86035.1| diguanylate cyclase [gamma proteobacterium HTCC5015] Length = 394 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 78/263 (29%), Positives = 119/263 (45%), Gaps = 31/263 (11%) Query: 18 NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY--------GLEYIL---V 66 N+ S H I F +F+ + A V N ++ P G +IL V Sbjct: 133 NITSALAHVKKIRF-LFWCVVTALVCLGINDLFGWLEHAPLLERSLYQPDGTPHILWWVV 191 Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----- 121 + + +I+S I L L + + +E N ++S ID L+ L N S+FI Sbjct: 192 QAVMALILSALIYLCLLAVGRWVERE-----NLYREMSTIDGLTRLTNRSSFIKRGDEEL 246 Query: 122 ------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 + L+ + D+D+FK IND +GH GD+V+ S ++ VGR Sbjct: 247 ARLQRLPSDPSPTLACIMLDLDHFKSINDTWGHHAGDEVLVVASKIMMDNARQYDEVGRY 306 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPI 233 GGEEFA A +A LRK I + + + G +I T S G+A + E + Sbjct: 307 GGEEFAILLPSVDLALAEKIAERLRKKISEAVVKV-DGKAIQFTASLGVASFPSEGLENM 365 Query: 234 STIIYRADQALYVAKKSGRNRVV 256 + ++ AD ALY AK+ GRN+VV Sbjct: 366 NDLLKAADAALYEAKEGGRNQVV 388 >gi|229528476|ref|ZP_04417867.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)] gi|229334838|gb|EEO00324.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)] gi|327485707|gb|AEA80113.1| Sensory box/GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 627 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ + DID+FK+IND FGH Sbjct: 458 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 517 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 518 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFSYTSIEEAEQVLNRVR-------L 570 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 571 HIASLHDQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 622 >gi|291282640|ref|YP_003499458.1| Diguanylate cyclase [Escherichia coli O55:H7 str. CB9615] gi|209770198|gb|ACI83411.1| hypothetical protein ECs2144 [Escherichia coli] gi|209770204|gb|ACI83414.1| hypothetical protein ECs2144 [Escherichia coli] gi|290762513|gb|ADD56474.1| Diguanylate cyclase [Escherichia coli O55:H7 str. CB9615] gi|320636972|gb|EFX06837.1| diguanylate cyclase [Escherichia coli O157:H7 str. G5101] gi|320642326|gb|EFX11619.1| diguanylate cyclase [Escherichia coli O157:H- str. 493-89] gi|320647678|gb|EFX16435.1| diguanylate cyclase [Escherichia coli O157:H- str. H 2687] gi|320653311|gb|EFX21450.1| diguanylate cyclase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658919|gb|EFX26549.1| diguanylate cyclase [Escherichia coli O55:H7 str. USDA 5905] gi|320663752|gb|EFX30984.1| diguanylate cyclase [Escherichia coli O157:H7 str. LSU-61] Length = 296 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S E L++ + DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +E + +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEETLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|226953553|ref|ZP_03824017.1| diguanylate cyclase [Acinetobacter sp. ATCC 27244] gi|226835731|gb|EEH68114.1| diguanylate cyclase [Acinetobacter sp. ATCC 27244] Length = 472 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 89/197 (45%), Gaps = 17/197 (8%) Query: 77 TISLLLGYISGSILKELFISYNR-----ISQLSRI---DCLSGLLNHSAFISSLGSYNEK 128 TIS LG I +I S N+ I +L D L+ L F+ SL E+ Sbjct: 273 TISTRLGLIMMTIAPLTVSSINKVRSKLIEELQHTIAHDELTSSLTRRQFLQSLQILQEQ 332 Query: 129 L-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + + DID+FK IND++GH +GD+ + + GRLGGEEFA Sbjct: 333 AQNAGHTSAFLMLDIDHFKHINDSYGHQIGDRALQHFVKTTQTLLNPQDLFGRLGGEEFA 392 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYR 239 ++E A A +R+ + S I + I S GI ++ ST + Sbjct: 393 IFIANTNESVAYQCAEKIRQHVSESPIQLEHAQIFSIQTSIGICINTPEKNYSTEQLFKH 452 Query: 240 ADQALYVAKKSGRNRVV 256 AD ALY AK+ GRN+VV Sbjct: 453 ADDALYRAKRQGRNQVV 469 >gi|229514351|ref|ZP_04403812.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21] gi|254284565|ref|ZP_04959532.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226] gi|150425350|gb|EDN17126.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226] gi|229348331|gb|EEO13289.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21] Length = 321 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N + + LS + DID FK IND FGH G Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ FL+ V F GR+GGEEF + + A LA +R+ + Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264 Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 P + HI + AG++ H + I+ I R+DQALY AK++GRNR + Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316 >gi|186471171|ref|YP_001862489.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum STM815] gi|184197480|gb|ACC75443.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia phymatum STM815] Length = 508 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 13/165 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +I L+ D L+GL N L +++++ D+D FKQ+ND GH Sbjct: 340 KILHLASHDSLTGLPNRRELRDRLEQILSVRARPQGGSVAMMYLDLDGFKQVNDRLGHCA 399 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-- 208 GD+V+ ++ +L V V RLGG+EFA A ++ LA +++I + + Sbjct: 400 GDEVLETVAARLSRVLRPGELVARLGGDEFAIIADHTTLPSVVALA---QRVIRDIALPY 456 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++S+G ++ I S GIA + + + +I RADQALY AK++GR Sbjct: 457 HLSTGEAVSIGTSVGIALAANDDSVDGLIRRADQALYSAKQAGRG 501 >gi|323152714|gb|EFZ38986.1| cellulose synthesis regulatory protein [Escherichia coli EPECa14] Length = 558 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLISWYVIRRMVSNMYVLQSSLHWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|262275035|ref|ZP_06052846.1| hypothetical protein VHA_002018 [Grimontia hollisae CIP 101886] gi|262221598|gb|EEY72912.1| hypothetical protein VHA_002018 [Grimontia hollisae CIP 101886] Length = 267 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 10/169 (5%) Query: 100 ISQLSRIDCLSGLLNH----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 + ++ D L+ L N F ++ + DID+FK IND FGHPVGD V+ Sbjct: 88 LRDMAHRDDLTNLYNRRYLLDLFSERHAAHQRCQYLAIADIDHFKHINDTFGHPVGDIVL 147 Query: 156 AFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--- 211 ++ + + F TP + RLGGEEFA + EA LRK +E+ + +S Sbjct: 148 RRVARE-IEGFTTPDEYAFRLGGEEFALLIWADNHGEAYARLEQLRKSLEHCEFRVSHPN 206 Query: 212 SGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S P ++ TIS G+ + + RAD+ALY+AK+SGRN ++ + Sbjct: 207 SQPLTLSCTISIGMTVIAATDDFLSASLRADEALYIAKRSGRNNLINYE 255 >gi|258623235|ref|ZP_05718244.1| GGDEF family protein [Vibrio mimicus VM573] gi|258584533|gb|EEW09273.1| GGDEF family protein [Vibrio mimicus VM573] Length = 326 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQI 142 +++ +Y I S D L+GLLN I+ N +L I D+D+FK I Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRNTFAINPSAEENHRLWIAMLDLDHFKAI 191 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+FGH +GD+++ + Q+ FG + R GGEEF E + R+ Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIVFSSGDELAINRTLDGFRRH 251 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I P I ++ SAG + + TI+ AD+ALY AK+ GR++V C+ ++ Sbjct: 252 IRQHTF-----PRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHGRDQVHCYENL 306 >gi|89093894|ref|ZP_01166839.1| sensory box protein [Oceanospirillum sp. MED92] gi|89081780|gb|EAR61007.1| sensory box protein [Oceanospirillum sp. MED92] Length = 342 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 17/196 (8%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119 ENL +I T L + ++L + L+ D L+G+ N F I Sbjct: 146 ENLDHIIQERTKEL------DQLNQQLARKVEEVEMLASRDALTGIYNRRMFESFLDIEI 199 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 Y++ + ++ DID FK +ND +GH GDKV+ ++ L ++ R GGEE Sbjct: 200 KRAKRYSQPMCVILADIDLFKHVNDRYGHSSGDKVLVEVALTLQQHLRESDYLARWGGEE 259 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 FA ++ + A A LR +E ++ + I +T S G+ + K+ ++I R Sbjct: 260 FAIILPNTATKVAMETAERLRHEVE----SLVTTEGISVTCSFGVTQFHQKDCGTSIFSR 315 Query: 240 ADQALYVAKKSGRNRV 255 DQALY+AK RN V Sbjct: 316 MDQALYMAKDQNRNTV 331 >gi|328474322|gb|EGF45127.1| putative GGDEF family protein [Vibrio parahaemolyticus 10329] Length = 306 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 18/165 (10%) Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S+ID L+ + N F L S + +++ FD+D+FK IND GH GD V+ Sbjct: 141 SQIDSLTNIFNRRVFFEKLSEEVVKSQSPEYQGALLLFDLDFFKVINDKRGHDAGDYVLE 200 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-----SQINIS 211 L+D + + R+GGEEFA GSS EA L ++R I+N QI I Sbjct: 201 SLADLVSNLLMKDETFARVGGEEFAIILSGSSLSEARELGEEVRSHIQNCVFEFKQIEIP 260 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+ E + R D+ LY AK++GRN VV Sbjct: 261 ------VTVSVGVVNIIQNETTKGLYARVDKVLYAAKRNGRNCVV 299 >gi|326793521|ref|YP_004311341.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326544285|gb|ADZ89505.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 392 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/270 (27%), Positives = 119/270 (44%), Gaps = 20/270 (7%) Query: 12 WLCHEKNLESFSPHTFMIY----FSIFFSIFIATVIFIANIFLF----YIGLTPFYGLEY 63 WL + ++ + P + M+ SI FS FI +FLF + F+ E Sbjct: 111 WLGTWRLIDMYPPISGMVLVAMSLSILFSHSFQFRQFILLLFLFNTIPVLSYLAFHMDEL 170 Query: 64 ILVENLSLVIISITISLLLGYIS------GSILKELFISYNRISQLSRIDCLSGLLNHSA 117 + + + L+ + LLL ++ G + L R + D L+ L N Sbjct: 171 VTLRGVELMTNFGPMMLLLIFVLPYQMHFGKYVDTLRNRQKRTEHEAERDYLTDLYNRRG 230 Query: 118 F---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 F +L S +++ + D D+FK IND FGH VGDKV+ L+ +L ++ FV R Sbjct: 231 FENRKETLAS-ETQVATLLVDADHFKHINDTFGHTVGDKVLVELASKLRGIYLNEHFVVR 289 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 GGEEF + ++ +A+D + Q + + +T+S G++ Sbjct: 290 WGGEEFLVLIVNPDPEQLKAIADDFHASLCTEQYRAIAPRA--LTVSIGVSNMGPLSQFE 347 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + +AD LY AK+ GRN+V FS N Sbjct: 348 ALFEQADHCLYKAKERGRNQVRLFSQETNE 377 >gi|300904847|ref|ZP_07122672.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|301304250|ref|ZP_07210365.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1] gi|300403230|gb|EFJ86768.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|300840507|gb|EFK68267.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1] gi|315257212|gb|EFU37180.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1] Length = 436 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 243 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 302 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 303 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 362 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 363 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 422 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 423 KQAGRNRV 430 >gi|285017933|ref|YP_003375644.1| hypothetical protein XALc_1142 [Xanthomonas albilineans GPE PC73] gi|283473151|emb|CBA15657.1| hypothetical protein XALc_1142 [Xanthomonas albilineans] Length = 329 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 117/259 (45%), Gaps = 17/259 (6%) Query: 13 LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV 72 +CH + + P +++ S FF + TV NI L + L G SL+ Sbjct: 81 VCHALH-HAAVPWLYLVMMSNFF-VVGRTVGLACNITLIVMLLLIIPGTLLGPEHMFSLL 138 Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------Y 125 +S+ I+ L GYI L++ + ++ QL+ D L+ L N SL Sbjct: 139 TVSLLITGL-GYILSLRLEDDRV---QLEQLASHDALTALPNRRMLERSLSQCVADPRRT 194 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + ++ DID+FK++ND GH GD+ + L+ L + P V R GGEEF Sbjct: 195 VRRHGLIVLDIDHFKKVNDLHGHAEGDRTLTELAALLRLQVHAPDEVFRFGGEEFVIVTR 254 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 S E L +++ E ++ ++ PS IT+S G A C ++ RAD ALY Sbjct: 255 LQSTHE---LTAFTKRLYEATR-SVLHSPSGAITVSLGAAMLCDEQQWQDWFSRADTALY 310 Query: 246 VAKKSGRNRVVCFSDIENN 264 AK GR+ V D+ + Sbjct: 311 QAKNKGRDTYVVAEDVTQD 329 >gi|258621728|ref|ZP_05716759.1| GGDEF family protein [Vibrio mimicus VM573] gi|258585959|gb|EEW10677.1| GGDEF family protein [Vibrio mimicus VM573] Length = 377 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ++L+ D ++GLLN L +N+ L+I DID FKQIND +GH VGDKVI ++ Sbjct: 220 AELAARDPMTGLLNRRGMEGFLQGKRHNQYLAIAVLDIDDFKQINDTYGHDVGDKVICYI 279 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +Q+ + V R GGEEF EQ I+ + +S + G Sbjct: 280 GEQIENHIRSSDAVARFGGEEFVVYVTAKEQEQIHRIMQRIFDAVCHDSTQILDQG---- 335 Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G+ E + + ADQ LYVAK SG+N++V Sbjct: 336 FTVSGGVEIIESKTELTFEELFKAADQKLYVAKSSGKNQLV 376 >gi|254291528|ref|ZP_04962319.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|150422592|gb|EDN14548.1| GGDEF family protein [Vibrio cholerae AM-19226] Length = 489 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%) Query: 76 ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSI 131 + ++L+ +++G +L L ++R +QL+ D ++GLLN S L +++ L+I Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190 DID FKQIND +GH +GD+VI ++ +Q+ + V R GGEEF EQ Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248 I+ + S + + G T+S GI E + AD+ LYVAK Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480 Query: 249 KSGRNRVV 256 SG+N+++ Sbjct: 481 TSGKNQLI 488 >gi|149194946|ref|ZP_01872039.1| hypothetical protein CMTB2_08800 [Caminibacter mediatlanticus TB-2] gi|149134867|gb|EDM23350.1| hypothetical protein CMTB2_08800 [Caminibacter mediatlanticus TB-2] Length = 235 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 20/202 (9%) Query: 69 LSLVIISITISLLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119 LS +IS IS L S S+ EL + +LS D L+ N AF I Sbjct: 41 LSFYLISFIISYYLEKFSFETSLKNEL------LEKLSFFDYLTEAYNRRAFFKFANILI 94 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA-FLSDQLVVVFGTPMFVGRLGGE 178 + N+ L+++ DIDYFK+IND +GH VGD V+ F+S + +F R+GGE Sbjct: 95 NDAKRENKNLALLMMDIDYFKKINDTYGHEVGDIVLKEFVSLIKKNIRKNDLF-ARIGGE 153 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS-AGIAERCHKEPISTII 237 EF ++E + +AN + K+IE SQI I I TIS G + + + + + Sbjct: 154 EFVLLIKINNEYQPYSIANKILKLIETSQI-IYKNYKIKFTISIGGYIFNPNTDSLESAL 212 Query: 238 YRADQALYVAKKSGRNRVVCFS 259 +AD+ALY AK+ RN +V F+ Sbjct: 213 AKADKALYKAKER-RNTIVIFN 233 >gi|313682630|ref|YP_004060368.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum kujiense DSM 16994] gi|313155490|gb|ADR34168.1| diguanylate cyclase with extracellular sensor [Sulfuricurvum kujiense DSM 16994] Length = 461 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 13/168 (7%) Query: 97 YN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFG 147 YN ++ +LS D L+G+ N L +K+ S++ DID+FK +ND +G Sbjct: 295 YNAKLLELSITDKLTGIYNRLKIDERLTDEQKKVNRYMNYRCSVMMIDIDFFKTVNDTYG 354 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V+ L++ + F GR GGEEF +S ++A A R+ +E Sbjct: 355 HQYGDDVLKQLAELMRQNFRETDVFGRWGGEEFMVIFPNTSVEDAYAAAEKFRRNVEE-- 412 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 N+ S +T+S G+ E + ++ R D ALY AK+ GRNR+ Sbjct: 413 -NVRSMDK-PVTVSIGLGTFLTAESVDNMLSRIDAALYDAKEQGRNRI 458 >gi|331658001|ref|ZP_08358963.1| cellulose synthesis regulatory protein [Escherichia coli TA206] gi|315296460|gb|EFU55757.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3] gi|331056249|gb|EGI28258.1| cellulose synthesis regulatory protein [Escherichia coli TA206] Length = 558 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ LL Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 365 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 424 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ Sbjct: 425 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 484 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 485 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 544 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 545 KQAGRNRV 552 >gi|209544374|ref|YP_002276603.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5] gi|209532051|gb|ACI51988.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5] Length = 390 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 4/134 (2%) Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + + +S++ FDID+FK IND GH +GD V+ + + G +GRLGGEEFA Sbjct: 247 TVGQPVSLLIFDIDHFKSINDIHGHAMGDAVLKLFARAMGEEVGQEAIMGRLGGEEFAML 306 Query: 184 ALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRAD 241 GS A A N R+ + + P +H+T+S G+ E R + + ++ AD Sbjct: 307 LPGSDRATARAAGQNIARRFTALAAQDFR--PPLHVTVSIGLTEVRTSRITLDDLLAAAD 364 Query: 242 QALYVAKKSGRNRV 255 ALY AK GRNR+ Sbjct: 365 GALYQAKTLGRNRI 378 >gi|317049505|ref|YP_004117153.1| diguanylate cyclase [Pantoea sp. At-9b] gi|316951122|gb|ADU70597.1| diguanylate cyclase [Pantoea sp. At-9b] Length = 404 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 12/151 (7%) Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +AFIS L E ++F D D FK IND +GH GD+V+ ++ Sbjct: 250 DPLTGLANRAAFISKLSQLLDQQLAQENFVLLFLDGDRFKSINDTWGHAAGDEVLQSIAT 309 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS---QINISSGPSIH 217 +L + V RLGG+EFA + +EA L IE S +I IS+G +I Sbjct: 310 RLSGLVTKSDLVARLGGDEFAILITSMTSEEA---LQQLTARIEASITQKIAISAGVNIT 366 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAK 248 +++ G A H + +++I+ RAD +Y K Sbjct: 367 TSVTIGYAWSQHGDSVTSILERADMHMYKNK 397 >gi|255319086|ref|ZP_05360307.1| diguanylate cyclase [Acinetobacter radioresistens SK82] gi|262378170|ref|ZP_06071327.1| GGDEF family protein [Acinetobacter radioresistens SH164] gi|255303888|gb|EET83084.1| diguanylate cyclase [Acinetobacter radioresistens SK82] gi|262299455|gb|EEY87367.1| GGDEF family protein [Acinetobacter radioresistens SH164] Length = 523 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 81/154 (52%), Gaps = 10/154 (6%) Query: 107 DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N FI + +++ DIDYFK+IND++GH GD+++ ++ ++ Sbjct: 373 DPLTGLFNRRGLEIFIEEMTRTQTHFAVLLIDIDYFKKINDSYGHAQGDRILKQVAQHIL 432 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 F R GGEEF + + A A LRK +EN+ +N GP ITIS G Sbjct: 433 NNFRKNDLCCRYGGEEFVVLMPQADIENAYKSAERLRKKMENT-LNDGIGP---ITISIG 488 Query: 224 IA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IA +E ++ + AD LY AK +GRN+V Sbjct: 489 IAFWPETSRE-VARVFEIADAKLYQAKIAGRNQV 521 >gi|240139038|ref|YP_002963513.1| putative diguanylate cyclase with GGDEF motif; putative membrane protein [Methylobacterium extorquens AM1] gi|240009010|gb|ACS40236.1| putative diguanylate cyclase with GGDEF motif; putative membrane protein [Methylobacterium extorquens AM1] Length = 498 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 12/187 (6%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSI 131 ++LL + G L+ +++L++ D L+GL N + F + G+ L++ Sbjct: 310 TVLLSLLFGRELRRSAAMQAELARLAQTDVLTGLPNRRHFETVFAQAWGTSRRTGAPLAL 369 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQ 190 + D D+FK+ ND +GH VGD V+ L+D L P V R+GGEEF A L ++ Sbjct: 370 ILIDADHFKRYNDRYGHAVGDAVLRGLADSLSASVRRPGDLVARVGGEEF-AVLLPRTDH 428 Query: 191 EAAILANDL--RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 + A+ ++ R I + ++ GP +T+S G+A + RAD ALY AK Sbjct: 429 DGAMRVSETIHRAIAGFAMPSVGIGPGT-VTVSLGLAVDSGSGTAEDLYRRADAALYEAK 487 Query: 249 KSGRNRV 255 GRN+ Sbjct: 488 AGGRNQT 494 >gi|254522408|ref|ZP_05134463.1| hypothetical protein SSKA14_1536 [Stenotrophomonas sp. SKA14] gi|219719999|gb|EED38524.1| hypothetical protein SSKA14_1536 [Stenotrophomonas sp. SKA14] Length = 481 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 16/196 (8%) Query: 82 LGYISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIV 132 LG+ SIL +L + QL+R D L+G+ N F + L +N L ++ Sbjct: 282 LGFGLRSILLQTDLMERQAGLDQLARQDGLTGVANRREFDALLLAEWNRARRSGSPLGLL 341 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191 DID+FK ND GHP GD+ + ++ L + G V R GGEEFA GS+ Sbjct: 342 LVDIDHFKAFNDQHGHPAGDRCLQAVAAVLKAIAGRAGDSVARYGGEEFAVIVPGSALSG 401 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 LA LR+ +E + + G S+ I+I G ++ AD LY AK++G Sbjct: 402 VLALAERLREAVE--ALPLPEG-SVSISIGVGYLHPPALASADQLLADADAGLYAAKRAG 458 Query: 252 RNRVVCFS---DIENN 264 RN+VV + D E N Sbjct: 459 RNQVVLHAHVLDDEGN 474 >gi|121586661|ref|ZP_01676445.1| sensory box/GGDEF family protein [Vibrio cholerae 2740-80] gi|147672290|ref|YP_001215141.1| sensory box/GGDEF family protein [Vibrio cholerae O395] gi|153818335|ref|ZP_01971002.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457] gi|227812505|ref|YP_002812515.1| sensory box/GGDEF family protein [Vibrio cholerae M66-2] gi|229505921|ref|ZP_04395430.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286] gi|298499714|ref|ZP_07009520.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757] gi|121549089|gb|EAX59124.1| sensory box/GGDEF family protein [Vibrio cholerae 2740-80] gi|126511148|gb|EAZ73742.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457] gi|146314673|gb|ABQ19213.1| sensory box/GGDEF family protein [Vibrio cholerae O395] gi|227011647|gb|ACP07858.1| sensory box/GGDEF family protein [Vibrio cholerae M66-2] gi|227015586|gb|ACP11795.1| sensory box/GGDEF family protein [Vibrio cholerae O395] gi|229356272|gb|EEO21190.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286] gi|297541695|gb|EFH77746.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757] Length = 321 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N + + LS + DID FK IND FGH G Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ FL+ V F GR+GGEEF + + A LA +R+ + Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264 Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 P + HI + AG++ H + I+ I R+DQALY AK++GRNR + Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316 >gi|262190581|ref|ZP_06048821.1| sensory box/GGDEF family protein [Vibrio cholerae CT 5369-93] gi|262033541|gb|EEY52039.1| sensory box/GGDEF family protein [Vibrio cholerae CT 5369-93] Length = 308 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N + + LS + DID FK IND FGH G Sbjct: 139 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 198 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ FL+ V F GR+GGEEF + + A LA +R+ + Sbjct: 199 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 251 Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 P + HI + AG++ H + I+ I R+DQALY AK++GRNR + Sbjct: 252 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303 >gi|307721180|ref|YP_003892320.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294] gi|306979273|gb|ADN09308.1| diguanylate cyclase with PAS/PAC sensor [Sulfurimonas autotrophica DSM 16294] Length = 320 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 17/172 (9%) Query: 99 RISQLSRIDCLSGLLN-HSA------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L+ D L+G+ N H A I YN + +++ DIDYFK +ND++GH VG Sbjct: 150 KLKNLATKDSLTGIYNRHKANEIIDEEIIRQNKYNSRFAVLMLDIDYFKSVNDSYGHDVG 209 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---SQI 208 D ++ LS ++ R GGEEF ++ + A A L II + +Q+ Sbjct: 210 DIILQELSKLILQNTRKSDRFARWGGEEFLVILSQTTAEGAFEYAQKLANIIASYNFTQV 269 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ +T+S G+ E + ++ RAD+ALY+AK GRNRV+ S+ Sbjct: 270 SV-------LTVSIGVCVYKDGESKAELLKRADEALYIAKNRGRNRVIFKSN 314 >gi|303242469|ref|ZP_07328950.1| diguanylate cyclase [Acetivibrio cellulolyticus CD2] gi|302589993|gb|EFL59760.1| diguanylate cyclase [Acetivibrio cellulolyticus CD2] Length = 428 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 6/134 (4%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 NE LS++ DID+FK +ND GH VGD V+ + ++ V R GGEEF A Sbjct: 282 NENLSVIMMDIDHFKNVNDKHGHTVGDAVLVVFAQVILRCIRKTDLVARYGGEEFIAILP 341 Query: 186 GSSEQEAAILANDLRKIIENS---QINISSGPSIHITISAGIAE-RCHKEPISTIIYRAD 241 + + A +A +R+ I ++N + P IT S G+A H + II AD Sbjct: 342 ATDTKTAVGIAERIRETIATESMPKLNDTVVPG--ITCSLGVATYPIHANTKNNIIKVAD 399 Query: 242 QALYVAKKSGRNRV 255 ALY AK+ GRNRV Sbjct: 400 IALYKAKQGGRNRV 413 >gi|213622062|ref|ZP_03374845.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 288 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 92 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 150 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH GD+ I L+ QL + +GR GG+EF Sbjct: 151 HSRRHHREATLLIIDIDHFKSINDTWGHDAGDEAIIALTRQLQITLRGSDIIGRFGGDEF 210 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 211 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 261 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 262 YREWLKSADMALYKAKNAGRNRT 284 >gi|170768230|ref|ZP_02902683.1| diguanylate cyclase (GGDEF) domain protein [Escherichia albertii TW07627] gi|170122996|gb|EDS91927.1| diguanylate cyclase (GGDEF) domain protein [Escherichia albertii TW07627] Length = 296 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 6/158 (3%) Query: 104 SRIDCLSGLLNHSAFISSLG---SYNEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S S E LS+ + DID FK +ND +GH GD V+ L Sbjct: 129 SNMDILTGLPGRRVLDESFDYQLSNAEPLSLYLMLLDIDRFKLVNDTYGHLTGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++ EA + ++++N I G I+I Sbjct: 189 ATSLANWTRDYETVYRYGGEEFIIIIKAQNDDEACHAGVRICQLVDNHAI-AHPGGHINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T++AG++ +EP+ +I RAD+A+Y K++GRNR + Sbjct: 248 TVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCM 285 >gi|241206173|ref|YP_002977269.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860063|gb|ACS57730.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 717 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 11/180 (6%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFF 134 LLG IS + +E + +++ L+ D L+GL N +AF + + + +++++ Sbjct: 268 LLG-ISQDVTEERAVEA-KLAHLATRDPLTGLPNRAAFSEHINQRAVEATADSAIALLYI 325 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+D+FK IND+ GH GD ++ +S++L+ + G V RLGG+EFA + A Sbjct: 326 DVDHFKHINDSKGHAAGDALLCQVSERLLQLAGEGDLVARLGGDEFAVVLELDEPERAGR 385 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 A L + + S G H+T S GIA H ++ AD ALY AK+SGR+ Sbjct: 386 FAQRLLQTL--SHAFDLDGAREHVTCSVGIALAPDHAGDADVLMRHADLALYAAKESGRS 443 >gi|187920151|ref|YP_001889182.1| RNase II stability modulator [Burkholderia phytofirmans PsJN] gi|187718589|gb|ACD19812.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phytofirmans PsJN] Length = 689 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 11/182 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYF 139 SG+ + E ++ R++QL+ D L+GL N +A + + E + ++F D+D F Sbjct: 242 SGTDITEERLAQERLTQLANTDSLTGLANRNAIQDKIRAAIEDAAPGEAVGVLFLDLDNF 301 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K++ND++GH GD++I +S + + RLGG+EF A + E L Sbjct: 302 KKVNDHYGHVFGDRLIRDVSSAISECLNEGDTLARLGGDEFIVLAAKGTAHE---LETTA 358 Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++I+E + + G ++ S GIA H + + ++I AD A+YVAK G+ Sbjct: 359 QRILERMRTPFALGLVEVYTGCSIGIARYPEHGDSLESLIRSADTAMYVAKDEGKRTHRV 418 Query: 258 FS 259 FS Sbjct: 419 FS 420 >gi|218289278|ref|ZP_03493513.1| diguanylate cyclase [Alicyclobacillus acidocaldarius LAA1] gi|218240626|gb|EED07806.1| diguanylate cyclase [Alicyclobacillus acidocaldarius LAA1] Length = 376 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 11/176 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 EL++ + ++ D L+GL N +F L N L + DID FKQIND Sbjct: 199 ELWVRQILSEKEAKTDALTGLYNRKSFDEYLDFALQISEGTNTPLHLAVIDIDNFKQIND 258 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH VGD+++ + + F+ R GGEEFA S ++A +R+ I Sbjct: 259 RYGHLVGDEILRRTAQAIQQHLAAGDFLARYGGEEFAVIIPEVSHEQAVQNMEKIREYIA 318 Query: 205 N-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N + + + T+S G++ E + RADQ LY AK++G+N++V + Sbjct: 319 NVHHLELDGNRA---TVSIGLSTHRPGETRDELFERADQCLYRAKQTGKNKIVAWE 371 >gi|146278372|ref|YP_001168531.1| response regulator receiver modulated diguanylate cyclase [Rhodobacter sphaeroides ATCC 17025] gi|145556613|gb|ABP71226.1| response regulator receiver modulated diguanylate cyclase [Rhodobacter sphaeroides ATCC 17025] Length = 461 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 13/168 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ +D L+GL N + L + E+ +++ D+D FK +ND +GH GD V Sbjct: 287 RLAVVDPLTGLYNRRYAGAHLAAVAERAQAAGERFAVMVIDLDRFKSVNDRWGHGAGDAV 346 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSG 213 + ++ +L + R+GGEEF A EA +A LR+ IE +++ G Sbjct: 347 LVEVARRLHANLRPGDLIARIGGEEFLVALPDVRRPDEARAVAERLREAIEEQPVSLPCG 406 Query: 214 PSIHITISAGIA----ERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 S+ +TIS G+A + + E + ++ RAD AL +AK GRN+V Sbjct: 407 GSLRVTISVGLAFSLDDGGRRVETVDQVVNRADSALLIAKSGGRNQVT 454 >gi|153217131|ref|ZP_01950895.1| sensory box/GGDEF family protein [Vibrio cholerae 1587] gi|254224755|ref|ZP_04918371.1| sensory box/GGDEF family protein [Vibrio cholerae V51] gi|124113851|gb|EAY32671.1| sensory box/GGDEF family protein [Vibrio cholerae 1587] gi|125622818|gb|EAZ51136.1| sensory box/GGDEF family protein [Vibrio cholerae V51] Length = 321 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N + + LS + DID FK IND FGH G Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ FL+ V F GR+GGEEF + + A LA +R+ + Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264 Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 P + HI + AG++ H + I+ I R+DQALY AK++GRNR + Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316 >gi|117620876|ref|YP_856335.1| PAS/GGDEF domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562283|gb|ABK39231.1| PAS:GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 643 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 4/163 (2%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GLLN + SL +Y + ++VF D+D FK +NDN+GH GD+++ ++ +L Sbjct: 219 DSLTGLLNRYGLMKSLEAYCGLGGRFALVFMDLDNFKLVNDNYGHKAGDRLLERVAGRLK 278 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + + + RLGG+EF A S + A DL + +S P + I S G Sbjct: 279 QICPRDVELARLGGDEFTALVPLSHSSDRAQEVADLMLSQMTKPLQLSGVPEVTIGGSIG 338 Query: 224 IA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 IA + +I RAD A+Y AK+ GR R F+ T Sbjct: 339 IAIYPDDADDGDNLITRADMAMYQAKQMGRLRWQRFTPSMQQT 381 >gi|110802503|ref|YP_699073.1| response regulatory protein (sensory transduction system) [Clostridium perfringens SM101] gi|110683004|gb|ABG86374.1| GGDEF domain protein [Clostridium perfringens SM101] Length = 289 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 8/131 (6%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 +++ DID FK++ND +GH VGDK++ L+D + ++GR GGEEF Sbjct: 162 TVIMADIDSFKKVNDTYGHLVGDKILRDFAKVLNDN---IRENNDWIGRYGGEEFIIVLN 218 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 ++ + +A LRKIIE N SI IT S G+ E KE I AD+ LY Sbjct: 219 NTNLENGVKVAEKLRKIIEKMSFNYGD-LSIKITSSFGVCEISEKEDTFDTIKNADEKLY 277 Query: 246 VAKKSGRNRVV 256 +AK +GRN+ V Sbjct: 278 MAKMTGRNKTV 288 >gi|89093534|ref|ZP_01166482.1| hypothetical protein MED92_18118 [Oceanospirillum sp. MED92] gi|89082224|gb|EAR61448.1| hypothetical protein MED92_18118 [Oceanospirillum sp. MED92] Length = 477 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ LLN AFI + + LS++ DID+FK+IND +GH GD V+ +S Sbjct: 320 DPLTSLLNRRAFIDRYAAIRNQHQRNGQPLSLLLVDIDHFKEINDRYGHNAGDLVLKGIS 379 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L V R GG+EF G+ A +A +R I + + ++++ +T Sbjct: 380 EILTEAVRPSDLVTRWGGDEFLLLLSGTDSDNARDIAERIRTRI-SLEPDLAAISEQRLT 438 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+AE+ + + AD LY AKK+GR+R Sbjct: 439 VSIGVAEQRDDFDLDRHVQEADSGLYRAKKAGRDRA 474 >gi|323493757|ref|ZP_08098876.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] gi|323311991|gb|EGA65136.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] Length = 377 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 11/179 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 K+L ++ +LS D L+ L N I L +Y E L + D+DYFKQ+N Sbjct: 193 KQLSRVNKQLEELSLTDSLTKLPNRRCAIRKLKAYWQESTHNQEPLVCIMIDVDYFKQVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+++ LS L F + V RLGG+EF + +A R + Sbjct: 253 DTAGHDAGDRLLVELSHTLADSFRSDDLVCRLGGDEFFVICPNTDLAGGMHIAELTRNKV 312 Query: 204 ENSQINISSGPSI-HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +Q+ + G S+ +IS G+ ER + +I AD A+Y++K +GRNRV D Sbjct: 313 --NQMLVPVGESVWRGSISVGVGERTPTMNDFNDLIKEADNAVYLSKSAGRNRVSSTQD 369 >gi|260774060|ref|ZP_05882975.1| pole remodelling regulatory diguanylate cyclase [Vibrio metschnikovii CIP 69.14] gi|260611021|gb|EEX36225.1| pole remodelling regulatory diguanylate cyclase [Vibrio metschnikovii CIP 69.14] Length = 415 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 91/165 (55%), Gaps = 10/165 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 S +R+ L+ D L+GL N F + + +SI D+D+FK++ND +GH +GD+V+ Sbjct: 249 SNDRMFYLANKDVLTGLWNRRFFFDHIYTTKNLISIAMLDLDHFKKVNDLYGHAMGDQVL 308 Query: 156 AFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISS 212 ++ + +F V R GGEEF S+Q I+ L ++I+ + ++ S Sbjct: 309 QSVAQCMQDIFNHEDNELVARFGGEEFCLY----SKQAFPIVIEKLEQLIKQVASLSFSH 364 Query: 213 GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +TIS G+ C + IST++ RAD LY AK+ GRN+++ Sbjct: 365 NQHTFSVTISVGLF--CGYQDISTLVNRADDMLYEAKRRGRNQLI 407 >gi|261855889|ref|YP_003263172.1| diguanylate cyclase [Halothiobacillus neapolitanus c2] gi|261836358|gb|ACX96125.1| diguanylate cyclase [Halothiobacillus neapolitanus c2] Length = 353 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 87/164 (53%), Gaps = 9/164 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGSY-----NEKLS--IVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N L EK ++ DID+FK+IND++GH VGDK++ Sbjct: 177 ARTDPLTGLANRRGLNELLLQRINLFLQEKTPFCVILADIDHFKRINDSYGHLVGDKILR 236 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPS 215 F++ L+ V R GGEEFA + I+A LR+ I +S++ ++ SG Sbjct: 237 FVARTLMANIKGQDSVIRFGGEEFAIVLPYTQYDGGIIVAQHLRQKIASSRLRLAESGRD 296 Query: 216 I-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + +TIS G+A + +++ RAD AL AK GR+RVV Sbjct: 297 LGGLTISLGVAAVHTDDTPDSLLRRADDALLKAKAEGRDRVVGL 340 >gi|78778197|ref|YP_394512.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans DSM 1251] gi|78498737|gb|ABB45277.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans DSM 1251] Length = 770 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 16/178 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFK 140 ++ K++ + N + LSR D L+ L N + I L S N +K+SI+F D+D FK Sbjct: 329 NLQKKVQTAANELEHLSRHDHLTNLPNKTLLIDRLEHSINVASKNGQKVSILFLDLDRFK 388 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDL 199 +IND + H VGDK++ +S +L + +GR GG+EF S+E Q ++ N + Sbjct: 389 EINDTYNHEVGDKLLQDISRRLKKLIKEEDTIGRFGGDEFIIILNNSNETQTVEVVTNIM 448 Query: 200 RKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNR 254 + E +N +H T S GI+ + + I +I AD A+Y AK +G+NR Sbjct: 449 SAMSEPFNVN---KVKLHTTFSIGISIFPDDGNSRDI--LIRNADTAMYEAKSNGKNR 501 >gi|15892244|ref|NP_359958.1| response regulator PleD [Rickettsia conorii str. Malish 7] gi|15619381|gb|AAL02859.1| regulatory components of sensory transduction system [Rickettsia conorii str. Malish 7] Length = 450 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F I + KL ++ DID FK +ND +GH GDKV+ +S Sbjct: 291 DGLTGLFNRRYFDIHLKQIIEKTNKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVS 350 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218 L + R GGEEF +A A +R IE +I + Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIATAERIRVKIEYMNFHIEDQIEPLKT 410 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TIS G+ + +E I + I RAD+A+Y AK +G+N+VV Sbjct: 411 TISIGVTKYKKEESIESFIERADKAMYEAKTTGKNKVV 448 >gi|153821067|ref|ZP_01973734.1| sensory box/ggdef family protein [Vibrio cholerae B33] gi|255746319|ref|ZP_05420266.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101] gi|262158200|ref|ZP_06029318.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|126521441|gb|EAZ78664.1| sensory box/ggdef family protein [Vibrio cholerae B33] gi|255736073|gb|EET91471.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101] gi|262030078|gb|EEY48724.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1] Length = 308 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N + + LS + DID FK IND FGH G Sbjct: 139 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 198 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ FL+ V F GR+GGEEF + + A LA +R+ + Sbjct: 199 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 251 Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 P + HI + AG++ H + I+ I R+DQALY AK++GRNR + Sbjct: 252 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303 >gi|258625157|ref|ZP_05720073.1| GGDEF family protein [Vibrio mimicus VM603] gi|258582532|gb|EEW07365.1| GGDEF family protein [Vibrio mimicus VM603] Length = 338 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 84/155 (54%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGL N AF +L + ++ DID+FK +ND +GH GD++I ++ +L Sbjct: 182 DSLSGLYNRRAFDGDMFTLIHAAHPVCLIMLDIDHFKALNDTYGHLFGDQIIRAIAKRLQ 241 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA S + A A +R+ IE + + SG S+ +IT S Sbjct: 242 SLCRDGITAYRYGGEEFALITPNKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGNITAS 301 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E+ + + +++ RAD LY AK GRNRV+ Sbjct: 302 FGVVEKIDGDSLESLVGRADGLLYEAKNLGRNRVM 336 >gi|239905466|ref|YP_002952205.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239795330|dbj|BAH74319.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 372 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 25/178 (14%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+ + N AF +G +LS+ DID+FK+ ND GH +GD+ + Sbjct: 189 LTLTDALTAIPNRRAFDEHIGRNIAVADQGQRQLSLFMLDIDHFKRFNDEHGHRIGDQAL 248 Query: 156 AFL-------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 + +D++ + +F R GGEEFA L ++ EA LA+ +R+ IE Sbjct: 249 VVVGSILKGFADEMKQLEDREIFPARYGGEEFAVTLLDVAKNEAEELADIIRRKIERYNF 308 Query: 209 NISS------GPSIHITISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRV 255 I I I +S G+AE P ++ ++ AD+ALY+AK SGRN+V Sbjct: 309 VIRDPDGQILAAGIKINVSIGVAELLTDCPAAARDVAHLVDAADKALYLAKASGRNQV 366 >gi|241204117|ref|YP_002975213.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858007|gb|ACS55674.1| response regulator receiver modulated diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 457 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 11/176 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 L S + +L+ D L+GL N + L + LS++ DID FK +ND Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKHVND 339 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ S ++ R GGEEF +S + AA +A LR IE Sbjct: 340 TYGHDGGDEVLREFSSRVRSTIRGADLACRYGGEEFVVVMPDTSPEIAAAVAERLRAAIE 399 Query: 205 NSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 ++ + SG ++ +T S GIA R P ++ +AD ALY AK +GRNRVV Sbjct: 400 SAPFMLKHSGEALSVTASFGIASRIASVLTP-GQLMKQADLALYEAKNTGRNRVVA 454 >gi|153824779|ref|ZP_01977446.1| sensory box/ggdef family protein [Vibrio cholerae MZO-2] gi|149741735|gb|EDM55764.1| sensory box/ggdef family protein [Vibrio cholerae MZO-2] Length = 308 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N + + LS + DID FK IND FGH G Sbjct: 139 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 198 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ FL+ V F GR+GGEEF + + A LA +R+ + Sbjct: 199 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 251 Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 P + HI + AG++ H + I+ I R+DQALY AK++GRNR + Sbjct: 252 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 303 >gi|153801376|ref|ZP_01955962.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3] gi|153828092|ref|ZP_01980759.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39] gi|297580011|ref|ZP_06941938.1| sensory box/GGDEF family protein [Vibrio cholerae RC385] gi|124123042|gb|EAY41785.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3] gi|148876501|gb|EDL74636.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39] gi|297535657|gb|EFH74491.1| sensory box/GGDEF family protein [Vibrio cholerae RC385] Length = 321 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N + + LS + DID FK IND FGH G Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ FL+ V F GR+GGEEF + + A LA +R+ + Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264 Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 P + HI + AG++ H + I+ I R+DQALY AK++GRNR + Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316 >gi|15801598|ref|NP_287615.1| hypothetical protein Z2163 [Escherichia coli O157:H7 EDL933] gi|15831398|ref|NP_310171.1| hypothetical protein ECs2144 [Escherichia coli O157:H7 str. Sakai] gi|168756185|ref|ZP_02781192.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4401] gi|168761368|ref|ZP_02786375.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4501] gi|168768926|ref|ZP_02793933.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4486] gi|168774227|ref|ZP_02799234.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4196] gi|168781516|ref|ZP_02806523.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4076] gi|168799331|ref|ZP_02824338.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC508] gi|195937029|ref|ZP_03082411.1| hypothetical protein EscherichcoliO157_11327 [Escherichia coli O157:H7 str. EC4024] gi|208811056|ref|ZP_03252889.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4206] gi|208816270|ref|ZP_03257449.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4045] gi|208821344|ref|ZP_03261664.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4042] gi|209399358|ref|YP_002270535.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4115] gi|217329174|ref|ZP_03445254.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. TW14588] gi|254793082|ref|YP_003077919.1| hypothetical protein ECSP_2022 [Escherichia coli O157:H7 str. TW14359] gi|261224499|ref|ZP_05938780.1| hypothetical protein EscherichiacoliO157_07847 [Escherichia coli O157:H7 str. FRIK2000] gi|261257068|ref|ZP_05949601.1| hypothetical protein EscherichiacoliO157EcO_14768 [Escherichia coli O157:H7 str. FRIK966] gi|12515121|gb|AAG56227.1|AE005351_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361610|dbj|BAB35567.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187770032|gb|EDU33876.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4196] gi|189000908|gb|EDU69894.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4076] gi|189356746|gb|EDU75165.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4401] gi|189361925|gb|EDU80344.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4486] gi|189368164|gb|EDU86580.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4501] gi|189378216|gb|EDU96632.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC508] gi|208724562|gb|EDZ74270.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4206] gi|208732918|gb|EDZ81606.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4045] gi|208741467|gb|EDZ89149.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4042] gi|209160758|gb|ACI38191.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4115] gi|209770200|gb|ACI83412.1| hypothetical protein ECs2144 [Escherichia coli] gi|209770202|gb|ACI83413.1| hypothetical protein ECs2144 [Escherichia coli] gi|209770206|gb|ACI83415.1| hypothetical protein ECs2144 [Escherichia coli] gi|217317613|gb|EEC26041.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. TW14588] gi|254592482|gb|ACT71843.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|320190013|gb|EFW64664.1| hypothetical protein ECoD_03191 [Escherichia coli O157:H7 str. EC1212] gi|326340591|gb|EGD64388.1| hypothetical protein ECoA_03959 [Escherichia coli O157:H7 str. 1044] gi|326340842|gb|EGD64635.1| hypothetical protein ECF_03383 [Escherichia coli O157:H7 str. 1125] Length = 296 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSI--VFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S E L++ + DID FK +ND +GH +GD V+ L Sbjct: 129 SNMDVLTGLPGRRVLDESFDHQLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 189 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEG-HINI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +E + +I RAD+A+Y K++GRNR + F D +N Sbjct: 248 TVTAGVSRAFPEETLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 291 >gi|83749389|ref|ZP_00946384.1| Hypothetical Protein RRSL_00679 [Ralstonia solanacearum UW551] gi|83723966|gb|EAP71149.1| Hypothetical Protein RRSL_00679 [Ralstonia solanacearum UW551] Length = 562 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 18/189 (9%) Query: 84 YISGSILKELFISYNRIS--QLSRI------DCLSGLLNHSAFISSL---GSYNEKLSIV 132 YI LK + R+S +++R+ D L+GL N +L ++ S V Sbjct: 358 YIEAHRLKRALLRGTRLSSSRMARLNHEALTDPLTGLYNRRGVADALRLLAGRHQPFSAV 417 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK+IND GH VGD+V+ ++ + GR+GGEEF ++ + A Sbjct: 418 TLDVDHFKRINDRDGHDVGDQVLKHIAALIREQARHDDITGRIGGEEFILLLPDATPEGA 477 Query: 193 AILANDLRKIIENSQINISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250 A LR+ +E P+ +T+S G+A+ E + ++ +D ALY AK+S Sbjct: 478 FKTAERLRRAVE-----ARPNPTGQVVTVSLGVADYPGASEEVDAVLKLSDLALYQAKRS 532 Query: 251 GRNRVVCFS 259 GRNR V + Sbjct: 533 GRNRTVLYQ 541 >gi|319788293|ref|YP_004147768.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1] gi|317466805|gb|ADV28537.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1] Length = 359 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 20/209 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 ILV ++ + I ++ ++ + F+ ++ +++ D L+GL N AF + Sbjct: 125 ILVVRTMFIVTTNIIGIITAWVLDQEGRGNFLMARQLRGMAQRDYLTGLPNRRAFAERID 184 Query: 124 SYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRL 175 + ++ L I D+D+FK ND +GHP GD+V+ + L P+ V R Sbjct: 185 AVWQQARGEQRPLGIALMDVDWFKAYNDRYGHPAGDRVLRAVGRVLGAHARGPLDMVARH 244 Query: 176 GGEEFAA----AALGSSEQEAAILANDLRKI-IENSQINISSGPSIHITISAGIA---ER 227 GGEEF A L E A + D+ + IE++ ++ P +TIS G+ + Sbjct: 245 GGEEFVCVWYDATLAEVETTLAAIHADIASLGIEHAGSHV---PGNRLTISIGLHYLYPQ 301 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVV 256 K P ++ RADQALY AK SGR+ V Sbjct: 302 AGKPPTEALL-RADQALYEAKASGRHTTV 329 >gi|300693374|ref|YP_003749347.1| signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum PSI07] gi|299075411|emb|CBJ34706.1| putative signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum PSI07] Length = 489 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 22/236 (9%) Query: 35 FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94 + +F+A +I+ + + G+ LV++ ++L + Y+ L Sbjct: 263 YPLFVAVGTATEDIYANWKARAWWIGV---------LVVLFNMVTLAMAYLFAQHLDRRI 313 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147 R ++L+ D L+GL N A L + + LS++ D+D+FK ND++G Sbjct: 314 EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYG 373 Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 HP GD I ++ + P R GGEEF GS A ++A +R I Sbjct: 374 HPDGDVAIQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLGSANVIAETIRHAILAL 433 Query: 207 QINISSGPSIHITISAGIAERC-----HKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + S +T+S G A ++ +T+ AD LY AK GRNR V Sbjct: 434 NIPHTQSASAVLTVSIGAASGTPTSSGEQQRAATLTKAADAQLYRAKTLGRNRTVS 489 >gi|242277740|ref|YP_002989869.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242120634|gb|ACS78330.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 555 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 82/171 (47%), Gaps = 16/171 (9%) Query: 107 DCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+GL N ++ G+ + S++ DID+FK IND +GH VGD V+ + Sbjct: 379 DQLTGLPNRR-YLMKEGTRLVDIAIRAGQPCSLMIMDIDHFKVINDTYGHTVGDIVLQQI 437 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 S V + + R GGEEF A GS LA LR+ +E N P + Sbjct: 438 SKAFQEVVRSSDIIARYGGEEFVVVAPGSDIDSGRTLAERLRQSVEARIFNNDEQP-LTC 496 Query: 219 TISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 TIS G++ + ++ RAD ALY AK +GRNR +C ++ N Sbjct: 497 TISIGVSHYATDIKFGVDAYEDMLARADNALYKAKDTGRNR-ICIAEPHNK 546 >gi|50085379|ref|YP_046889.1| hypothetical protein ACIAD2279 [Acinetobacter sp. ADP1] gi|49531355|emb|CAG69067.1| conserved hypothetical protein; putative membrane protein [Acinetobacter sp. ADP1] Length = 352 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 2/123 (1%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D+FK+IND +GH GD +A +S L + G R GG+E A + S + Sbjct: 227 LILLDVDHFKKINDTYGHEAGDYFLAEMSSILRELIGPKDTPARFGGDELAIIVVDQSNE 286 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 E +LA ++ I+ QI + S P T+S GIA + +S AD+ALY K++ Sbjct: 287 EIILLARRIKNSIQ--QIRLQSDPEFSTTVSIGIASAETVDTVSAWFALADKALYQVKRN 344 Query: 251 GRN 253 GRN Sbjct: 345 GRN 347 >gi|229520463|ref|ZP_04409888.1| GGDEF family protein [Vibrio cholerae TM 11079-80] gi|229342561|gb|EEO07554.1| GGDEF family protein [Vibrio cholerae TM 11079-80] Length = 489 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 12/188 (6%) Query: 76 ITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSI 131 + ++L+ +++G +L L ++R +QL+ D ++GLLN S L +++ L+I Sbjct: 306 LVVALVYLFLTG-VLIYLNTRWDRQHYAQLAARDPMTGLLNRRGMESFLKGKRHSQYLAI 364 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQ 190 DID FKQIND +GH +GD+VI ++ +Q+ + V R GGEEF EQ Sbjct: 365 AVLDIDDFKQINDAYGHDMGDRVICYIGEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQ 424 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAK 248 I+ + S + + G T+S GI E + AD+ LYVAK Sbjct: 425 ITRIMQRIFDAVCRESPLILEPG----FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAK 480 Query: 249 KSGRNRVV 256 SG+N+++ Sbjct: 481 TSGKNQLI 488 >gi|167587527|ref|ZP_02379915.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu] Length = 468 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 8/176 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQI 142 L+EL + ++ ++ D L+G N F+ +L N S++ D+D+FK I Sbjct: 292 LQELQRTNEKLEHMAATDPLTGAANRRHFLDRVETEIALAKRNGAPFSVLSLDLDHFKSI 351 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND++GH GD+V+ + + V R+GGEEF + A + +R Sbjct: 352 NDSYGHQAGDEVLQRFVKKCLDAIRPYDGVARVGGEEFMVLLPQAGLDTARSIGERIRAA 411 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I + G I +T+S G++E E + I+ + D+ LY AK GRNRVV Sbjct: 412 IAGTPFEAGIGKPIAVTVSVGVSEFGRDGETVDAILRKVDERLYRAKDQGRNRVVA 467 >gi|34499193|ref|NP_903408.1| hypothetical protein CV_3738 [Chromobacterium violaceum ATCC 12472] gi|34105044|gb|AAQ61400.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 393 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 8/176 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL + RI +L+ D L+G+ N A L ++ ++ D+DYFK+IND Sbjct: 217 ELDATLLRIRELTVRDPLTGVFNMRALTPELERLLQRSEEQGAPFALSIIDLDYFKRIND 276 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GHP GD+V+ L + R GGEEF + E + LR I Sbjct: 277 ECGHPTGDEVLQQLCRIVSATLKPGEVFARYGGEEFLLVTPDCNGGEHFRRMDALRSAIA 336 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +G + +TIS G+A + ++ RAD ALY+AK GRNRV D Sbjct: 337 DYDWTPLTG-ILPVTISCGVASWYPGTDLGAMLQRADSALYMAKAQGRNRVCSEKD 391 >gi|332701348|ref|ZP_08421436.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay] gi|332551497|gb|EGJ48541.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay] Length = 286 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 16/185 (8%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNE---KLSIVF 133 L G+ +G KE + ++QLS +D L+G N H A +Y +S+V Sbjct: 86 LFGWYAGR--KE-----DHLAQLSVMDHLTGTYNTRFFHRALEREFANYTRYSLPMSLVL 138 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D+FK IND +GH GD V++ +++ + V R+GGEEFA G++ A Sbjct: 139 LDLDHFKLINDTYGHQSGDVVLSEVAEIICSTVRQGDTVARVGGEEFAVIMPGTATDNAL 198 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSG 251 ++ +R+ I++ + G + + S G+A +R + R D+ALY AK+ G Sbjct: 199 AVSERIREAIKSRPAHSLDGTTFTVRASLGVAGTDRICPRSATEFFARVDRALYNAKEQG 258 Query: 252 RNRVV 256 R+R V Sbjct: 259 RDRSV 263 >gi|330500946|ref|YP_004377815.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328915232|gb|AEB56063.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 383 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 + + Q + D L+GL N A + L E+ LSI D+D+FK IND+ GH V Sbjct: 212 SELRQTALRDTLTGLPNRLAILEQLTDELERARRQHTPLSIAMLDLDHFKLINDSHGHLV 271 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ L +GR GGEEF G+ A L + LR+ + I Sbjct: 272 GDAVLRHCANHLQQRLRRNDSIGRYGGEEFLLVLPGTDANGALELVDQLRQSLTQHPAQI 331 Query: 211 SSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRN-RVVCFSD 260 S +I ++ SAG+ + E I+ ++ +AD ALY AK +GRN +V+ +D Sbjct: 332 DS-KTIALSFSAGVYGSSNSIAEDITGMLLKADTALYRAKHAGRNTQVLATAD 383 >gi|254561633|ref|YP_003068728.1| diguanylate cyclase [Methylobacterium extorquens DM4] gi|254268911|emb|CAX24872.1| putative diguanylate cyclase with GGDEF motif; putative membrane protein [Methylobacterium extorquens DM4] Length = 498 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 10/186 (5%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE---KLSI 131 ++LL + G L+ +++L++ D L+GL N + F + G+ L++ Sbjct: 310 TVLLSLLFGRELRRSAAMQAELARLAQTDVLTGLPNRRHFETVFAQAWGTSRRTGAPLAL 369 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQ 190 + D D+FK+ ND +GH VGD V+ L+D L P V R+GGEEFA G+ Sbjct: 370 ILIDADHFKRYNDRYGHAVGDAVLRGLADSLSASVRRPGDLVARVGGEEFAVLLPGTDHD 429 Query: 191 EAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 A ++ + + I + ++ GP +T+S G+A RAD ALY AK Sbjct: 430 GAMRISETIHRAIAGFAMPSVGIGPGT-VTVSLGLAVDSGGGTAEDFYRRADVALYEAKA 488 Query: 250 SGRNRV 255 GRN+ Sbjct: 489 GGRNQT 494 >gi|254849856|ref|ZP_05239206.1| sensory box/GGDEF family protein [Vibrio cholerae MO10] gi|254845561|gb|EET23975.1| sensory box/GGDEF family protein [Vibrio cholerae MO10] Length = 642 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ + DID+FK+IND FGH Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 637 >gi|187479495|ref|YP_787520.1| signaling protein [Bordetella avium 197N] gi|115424082|emb|CAJ50635.1| Putative signaling protein [Bordetella avium 197N] Length = 265 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 13/176 (7%) Query: 88 SILKELFISYNR-ISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYF 139 S++++L NR + + SR D L+GLLN A + N++ + D+D+F Sbjct: 88 SMMRDL----NRTLEETSRRDPLTGLLNRRALMDIIRMEVRRSDANKRPFVLAMLDVDHF 143 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K +ND +GH GD+V+ L+ L GR GGEEF + + + + + Sbjct: 144 KAVNDRYGHEAGDRVLVELAALLQRSMRAGDLCGRWGGEEFLLVLPDTDLETGQGVMDRV 203 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I+++ G ++ +T S G+A+ +S + RADQALY+AK GR+RV Sbjct: 204 VGAVRGLAIDVA-GETLRLTASVGMADHQMGATLSDALNRADQALYLAKHEGRDRV 258 >gi|160877450|ref|YP_001556766.1| PAS/PAC and Chase sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195] gi|160862972|gb|ABX51506.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica OS195] gi|315269652|gb|ADT96505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica OS678] Length = 1215 Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 10/182 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 + E +S RI L+ D L+ L N + S L + + +++++F D+D+FK I Sbjct: 776 ISERKVSEERIHFLAHHDSLTLLPNRLSLQSRLEVVFREALASDSQIAVMFIDMDHFKNI 835 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH VGD+++ ++ +L + G V RLGG+EF A ++ E A LA LR Sbjct: 836 NDTLGHHVGDQLLLEVARRLKNIVGDTDTVARLGGDEFVVALSDTNHDEVASLAEALRSG 895 Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + SQ + + ++H + S GI+ + + ++ AD A+Y AK +GRN F+ Sbjct: 896 L--SQTYVINNQALHSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAA 953 Query: 262 EN 263 N Sbjct: 954 MN 955 >gi|95928325|ref|ZP_01311073.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans DSM 684] gi|95135596|gb|EAT17247.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans DSM 684] Length = 403 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 10/166 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +L+ D ++GL + AF+ S Y S + DID+FK++ND +GH Sbjct: 228 QKLKELASTDVVTGLQSRRAFMEEAKSLFQIAERYQRPFSFLIIDIDHFKKVNDTYGHLG 287 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ L + +GR+GGEEFA + A L L + + ++I I Sbjct: 288 GDVVLVELGKIMSSCLRATDILGRIGGEEFAVILPETGPDHTAELIERLLEKVRTTEIRI 347 Query: 211 SSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNR 254 + +T+S G+A PI ++ AD+ALY AK GRNR Sbjct: 348 DDDTLVSVTVSIGVAT-VPPLPIHVGKVMAAADKALYQAKSDGRNR 392 >gi|45657010|ref|YP_001096.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600247|gb|AAS69733.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 311 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 99/206 (48%), Gaps = 31/206 (15%) Query: 82 LGYISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAFISSLGS--- 124 L Y++G + E + +ISQL+ D L+ L N AF + L S Sbjct: 110 LVYVTGRDITETIEANRQISQLATELKEANDLLFEQATTDPLTKLKNRRAFTNDLHSLLR 169 Query: 125 --YNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 EK LS++ D+D+FK ND FGH GDKV+ L+ L + +GR GGEEF Sbjct: 170 FMQQEKSFLSLLMIDVDHFKTYNDQFGHLAGDKVLVCLAKVLENTLRSNDLLGRFGGEEF 229 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHKEPIST- 235 AA + E+++ + L + S ITIS GI+ E+ + ST Sbjct: 230 VAALPNTCEKKSIEIGERLVNAVREFNWEYRS-----ITISVGISTSDFEKKQLDVDSTN 284 Query: 236 IIYRADQALYVAKKSGRNRVVCFSDI 261 +I +AD+ALY +K +GRN+ S I Sbjct: 285 LIEKADKALYQSKVNGRNKATHSSQI 310 >gi|37679644|ref|NP_934253.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|37198388|dbj|BAC94224.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 419 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 26/169 (15%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G +N A + L E+LS+++ D+D FK++ND +GH +GD Sbjct: 249 AELAHRDALTGAMNRHAVRTWLEKKARTVRWGQEQLSVLYLDLDKFKRVNDRYGHQMGDD 308 Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 ++ + V+V + + G R GGEEF ++ Q+A A +RK N Sbjct: 309 ILR----EFVLVVASSLEEGERLVRWGGEEFIVFLPETTLQQAVEKAEMIRK-------N 357 Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S+ +H +T S G+A+ +E ++ + RAD ALY AK GRNRV Sbjct: 358 VSNHLWVHGGMLTCSIGVAQ-MQEERVTEFLARADDALYQAKHRGRNRV 405 >gi|254243039|ref|ZP_04936361.1| hypothetical protein PA2G_03827 [Pseudomonas aeruginosa 2192] gi|126196417|gb|EAZ60480.1| hypothetical protein PA2G_03827 [Pseudomonas aeruginosa 2192] Length = 671 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + D L+GL N +A L + L + DID+FK+IND+FGH GDKV Sbjct: 509 QKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKV 568 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ +L F+ R GGEEF +S + L LR I + P Sbjct: 569 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEP 628 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT SAGI E + RADQALY AK++GR+R+ Sbjct: 629 -LSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRL 668 >gi|309780693|ref|ZP_07675434.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA] gi|308920375|gb|EFP66031.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA] Length = 510 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 17/213 (7%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLL 113 L P+ L +I+ L +S++++ G ++ L+ ++ N + +L++ D L+GL Sbjct: 297 LAPWQRLSWIV----GLSSLSVSLAFCAGVWLLAFALRGRVMAENHLRELTQTDPLTGLK 352 Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N A L + +LS++F D D+FK+ ND GH GD + +L+ Q + Sbjct: 353 NRRALDVALENEWDRLQRNDSRLSVLFIDADHFKRYNDAHGHAQGDVALQYLA-QCISKH 411 Query: 167 GTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG- 223 R GGEEF + E A +A +R +E + ++ T+S G Sbjct: 412 ARRRGDLAARYGGEEFVVLLPDTDEAGATRIAEAIRAEVEGAGAHVPDAGVAPFTVSVGC 471 Query: 224 -IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 A R + + AD ALY AK+ GRNRV Sbjct: 472 ATARRASLPSRNALTKAADDALYEAKRKGRNRV 504 >gi|319427137|gb|ADV55211.1| diguanylate cyclase [Shewanella putrefaciens 200] Length = 578 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 15/176 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++ D L+G N + + + LSIV FDID FKQ ND +GH +G Sbjct: 400 QVKAMAETDGLTGCYNRRYLDNQIEKELLYANDHQVPLSIVMFDIDNFKQFNDRYGHVIG 459 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D+ + + + + P + R GGEEF ++A +A LR+ I + +I Sbjct: 460 DQCLKQIVNAAKSILQRPTDTLARYGGEEFMILLPSRHLEDAYKIAEHLRETIIDLKIPH 519 Query: 211 SSGPSIHI-TISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVCFSDI 261 P I TISAGI C P +++I RAD+ALY AK +GRNR +I Sbjct: 520 EDSPHAGIVTISAGIT--CWHPPERLDTNSLIKRADEALYHAKLTGRNRTETLINI 573 >gi|91201479|emb|CAJ74539.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 344 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 15/187 (8%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLS 130 L L + +EL + ++ QLSR D L+GL N F L +NE LS Sbjct: 156 LTLAQVLEKTNQELQQANEKLHQLSRTDSLTGLANRRFFDEML--HNEWKQSVRLAKPLS 213 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSE 189 ++ DID+FK ND +GH GD+ + +S ++ + R GGEEF A + E Sbjct: 214 LLMIDIDFFKNYNDTYGHQKGDECLKRVSMAILSALKRECDIIARYGGEEFVALLSDTDE 273 Query: 190 QEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYV 246 A ++A ++ IE I + S S IT+S GI+ S +I +AD+ALY+ Sbjct: 274 SGAVMVAKAMQSNIEAMNIPHKDSNASGRITVSIGISNEVPSAASSPEKLISKADKALYL 333 Query: 247 AKKSGRN 253 AK GRN Sbjct: 334 AKYEGRN 340 >gi|92117963|ref|YP_577692.1| response regulator PleD [Nitrobacter hamburgensis X14] gi|91800857|gb|ABE63232.1| response regulator receiver modulated diguanylate cyclase [Nitrobacter hamburgensis X14] Length = 457 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 11/166 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N S L + E+ L+++ DID+FK IND +GH GD V Sbjct: 290 EMAVTDGLTGLHNRRYMESHLVTLAEQASLRGKPLALMMLDIDFFKSINDGYGHDAGDDV 349 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + ++ R GGEEF ++ A ++A LR+ I + G Sbjct: 350 LREFAVRIRKSIRGIDLACRYGGEEFVIVMPETNLHVAGMVAERLRRSIAGEPFAVHKGA 409 Query: 215 S-IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I +TIS G++ ER EP++ ++ RAD ALY AK GRNRVV Sbjct: 410 KRIDVTISIGLSILER-KGEPVADVLKRADIALYRAKHDGRNRVVA 454 >gi|78060223|ref|YP_366798.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383] gi|77964773|gb|ABB06154.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383] Length = 780 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 16/191 (8%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFK 140 +S SI+ + + RI QL+ D L+GL N + F++ SL ++ L ++F D+D FK Sbjct: 327 LSWSIVTQQAEAEARIHQLAHHDSLTGLPNRATFLAEFDASLRRSDKVLGLLFIDLDGFK 386 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDL 199 IND GH GD+V+ + ++L P M +GR+GG+EF A L ++ + A+ A Sbjct: 387 LINDACGHSAGDEVLRQVGERLRGQCPEPGMMLGRIGGDEF-AVLLRDTDADRAMGAAA- 444 Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-----HKEPISTIIYRADQALYVAKKSGRNR 254 ++++ + P I A I C H ++ RAD ALY AKK+G+ Sbjct: 445 -RLVDTLVAPYAPSPDRQFRIGASIG--CVLAPDHGNDGGVLLSRADMALYAAKKAGKGT 501 Query: 255 VVCFS-DIENN 264 FS D+E + Sbjct: 502 YRMFSPDMETS 512 >gi|15807849|ref|NP_285505.1| GGDEF family protein [Deinococcus radiodurans R1] gi|6460485|gb|AAF12191.1|AE001862_17 GGDEF family protein [Deinococcus radiodurans R1] Length = 362 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 70/153 (45%), Gaps = 3/153 (1%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D LS L N F + + + DID+FKQ+ND GH GD V+ L + L Sbjct: 205 DALSTLANRRQFDLDIQTLGPDDVLCLIDIDHFKQVNDVHGHEAGDGVLVQLGELLPRCL 264 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 R GGEEFA + + A+L LR + + + G +T+S G+A Sbjct: 265 RASDRAYRYGGEEFAVLFRMTGAVDPAVLGERLRAQVAQTAFTVLGGAP--LTVSVGLAR 322 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 R + RAD ALY AK+ GRNR V + Sbjct: 323 RGEGS-VGDCFRRADVALYAAKRGGRNRAVVWG 354 >gi|332703622|ref|ZP_08423710.1| diguanylate cyclase with GAF sensor [Desulfovibrio africanus str. Walvis Bay] gi|332553771|gb|EGJ50815.1| diguanylate cyclase with GAF sensor [Desulfovibrio africanus str. Walvis Bay] Length = 492 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 14/217 (6%) Query: 51 FYIGLTPFYGLEYILVENLSLVIISI-TISLLLGYISGSILKELFISYNRISQLSRIDCL 109 GLTPF L E +SL + TI+ + +++ ++ + Y + ++ D L Sbjct: 267 LRTGLTPFGLLALSSKEPVSLARDQVQTITAAVQHLALALKN--ALLYREVQTMADFDGL 324 Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 + + N +F L Y + +S++ D+D+FK+IND+FGH GD V+ L L Sbjct: 325 TRIHNRQSFDRRLREELARHKRYQQPISLLMLDLDHFKRINDSFGHEAGDMVLRELGRIL 384 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 R GGEEF + E A LA LR I +I G + +T+S Sbjct: 385 SESMRETDIAARYGGEEFVVILPHTDESNAHTLAQRLRAAI-CGKIFHFHGQTFQVTVSI 443 Query: 223 GIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 GI+ + + + ++ ADQALY+AK++GRN +VC Sbjct: 444 GISSIDAASVDLDTNLVREADQALYLAKRNGRN-MVC 479 >gi|298717316|ref|YP_003729958.1| inner membrane protein YfiN [Pantoea vagans C9-1] gi|298361505|gb|ADI78286.1| Inner membrane protein yfiN [Pantoea vagans C9-1] Length = 414 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 10/154 (6%) Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N SAF + L +E+ +++F D D FK INDN+GH GD+V+ + Sbjct: 262 DPLTGLANRSAFSARLTQRLDQPHEHERFALLFLDGDRFKSINDNWGHAAGDEVLKAIGS 321 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIHI 218 +L+ + V RLGG+EF A L SS+ A L +++I + I I+ G + Sbjct: 322 RLLSLASEQDLVARLGGDEF--AMLVSSQTSEAQLQQLMQRIDDTIGEHILIAEGMPVTT 379 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 +++ G A + + +I+ RAD +Y K+ R Sbjct: 380 SVTIGYAWSQPGDTVESILERADMNMYKNKRKNR 413 >gi|326319467|ref|YP_004237139.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376303|gb|ADX48572.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 332 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 12/179 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYN-EKLSIVFFDIDYFKQIND 144 L+EL ++ + + D L+GL N + LG + +++ DID+FK +ND Sbjct: 143 LRELRQERDKAMKSALSDELTGLSNRRYAMDFLHQKLGPNKAQAMAVAVIDIDHFKAVND 202 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH GD V+ + +L G V R+GGEEF G+ + A+ + + + Sbjct: 203 RFGHAGGDLVLKDFAARLAEAAGRDDMVARIGGEEFLLVLQGAR----TLGADSVLRCLG 258 Query: 205 NSQINIS---SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S +S P + SAG+A E + ++ RAD+ALY AK++GRNRVV ++ Sbjct: 259 ASLDTVSPLPEAPEFRYSCSAGVALVRPGETVGEVLRRADEALYQAKRAGRNRVVIHAE 317 >gi|229526510|ref|ZP_04415914.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229336668|gb|EEO01686.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis VL426] Length = 321 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N + + LS + DID FK IND FGH G Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ FL+ V F GR+GGEEF + + A LA +R+ + Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264 Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 P + HI + AG++ H + I+ I R+DQALY AK++GRNR + Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316 >gi|167034559|ref|YP_001669790.1| diguanylate cyclase [Pseudomonas putida GB-1] gi|166861047|gb|ABY99454.1| diguanylate cyclase [Pseudomonas putida GB-1] Length = 386 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 10/191 (5%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----- 128 ++I + ++ Y G +L S +R+ L+ D L+G N A + G ++ Sbjct: 188 VAIGTATVMMYSIGLVLLAKERSESRLQHLALRDVLTGTYNRRAILERFGVELDRARDQQ 247 Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 L++ DID+FK+IND +GH GD+V+ QL +GR GGEEF G Sbjct: 248 GSLAVAMIDIDHFKRINDLYGHLAGDEVLCHCVRQLQQRLRQGDSLGRYGGEEFLLLLPG 307 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQAL 244 + A LR+ I S +G I + S G+ C + ++++ +AD AL Sbjct: 308 TDRTGAMAALQGLREAIARSPARF-AGDQIELRFSVGLWCGVPCPGDSTASLLAQADAAL 366 Query: 245 YVAKKSGRNRV 255 Y AK +GRN V Sbjct: 367 YQAKAAGRNTV 377 >gi|94265113|ref|ZP_01288878.1| GGDEF:GAF [delta proteobacterium MLMS-1] gi|93454400|gb|EAT04698.1| GGDEF:GAF [delta proteobacterium MLMS-1] Length = 707 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 16/163 (9%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N F S L + E+ ++ FDID+FK++ND +GH GD V+ + Sbjct: 543 DGLTSLYNRRHFFSRLTAQCEEYRRSGKPFAVAMFDIDHFKRLNDTYGHLTGDCVLKEFA 602 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIH 217 L F V R GGEEFA + + Q AA A +I+E+++ + G S+ Sbjct: 603 TLLSQGFRAFDVVARYGGEEFAVMLIDADRQTAAATAQ---RILESTRRHHFKCEGNSLQ 659 Query: 218 ITISAG---IAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256 IT+S G + E P ++ ADQ LY AK +GR+RVV Sbjct: 660 ITVSGGLVEVGELADGAPTPEALVEEADQRLYRAKNAGRDRVV 702 >gi|62182973|ref|YP_219390.1| diguanylate cyclase/phosphodiesterase domain-containing protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130606|gb|AAX68309.1| putative diguanylate cyclase/phosphodiesterase domain 1 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322717479|gb|EFZ09050.1| diguanylate cyclase/phosphodiesterase domain-containing protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 354 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 118/250 (47%), Gaps = 20/250 (8%) Query: 32 SIFFSIFIATVIFIANIFLFYI-GLTPF----------YGLEYILVENLSLVIISITISL 80 S+ +FI ++ F ANI F + L P GL + + L +V I+I + Sbjct: 104 SLLSVLFIDSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLALPMVGIAIQHVI 163 Query: 81 LLGY--ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134 Y + ++ +L ++ LS +D L+GL N + L + S ++ Sbjct: 164 QKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLL 223 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND++GH +GD+ + +S + + V R GGEEF + Q+A Sbjct: 224 DIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARA 283 Query: 195 LANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +R+ + + +I S+ ++TIS GIA + I I +AD+ALY AK GR Sbjct: 284 TAERIRQEVYDLKIPHMFNESVATNVTISIGIAPLTDRN-IGDAIEKADKALYEAKHLGR 342 Query: 253 NRVVCFSDIE 262 N ++ D+ Sbjct: 343 NHILVSDDMR 352 >gi|134298519|ref|YP_001112015.1| diguanylate cyclase [Desulfotomaculum reducens MI-1] gi|134051219|gb|ABO49190.1| diguanylate cyclase [Desulfotomaculum reducens MI-1] Length = 574 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 14/178 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L N++ ++S D L+ L N L + N+ +S++ D+D FK +ND Sbjct: 376 DLHEEKNKLVKISITDELTDLYNRRYLNKELLRVIDLCSTLNKNISLLMLDLDRFKAVND 435 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH GD V+ ++ L VGR GGEEF S + A++A +R+ I Sbjct: 436 NYGHATGDTVLKEFAEILRRCSRGTDVVGRFGGEEFVIIIPFVSAERVALIAERIRQEIS 495 Query: 205 NSQINISSGPSIHITISAGI------AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 N + ++H+T+S G+ E +I +AD+ LY AK SGRN+VV Sbjct: 496 NFVFD-EGNSNLHVTVSIGVVTVKSLVTSTTAEVAEKLIKKADENLYQAKNSGRNKVV 552 >gi|319789587|ref|YP_004151220.1| diguanylate cyclase [Thermovibrio ammonificans HB-1] gi|317114089|gb|ADU96579.1| diguanylate cyclase [Thermovibrio ammonificans HB-1] Length = 358 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 20/190 (10%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 + +K+L + + + ID L+ + N ++F ++ N +++ DID Sbjct: 173 ANQQIKKLTQELEQTKKEASIDFLTQVANRASFDRAITDMVNDFYRRNYPFALLMIDIDN 232 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+IND +GH GD V+ L+ L + R GGEEFA G + +A +A Sbjct: 233 FKKINDTYGHQAGDYVLRELARLLKSQLRARDIIARYGGEEFAILLPGVTFSQAIRVAER 292 Query: 199 LRKIIE------NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 LRK +E N Q+ I +TIS G+A + ++ +AD+ALY+AK+SG+ Sbjct: 293 LRKSVEKHLFKYNDQV-------IPVTISVGVAMMRDGLDETALVEKADKALYLAKRSGK 345 Query: 253 NRVVCFSDIE 262 N+V D+E Sbjct: 346 NQVKTDLDVE 355 >gi|313637199|gb|EFS02717.1| ggdef domain-containing protein [Listeria seeligeri FSL S4-171] Length = 319 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 114/235 (48%), Gaps = 21/235 (8%) Query: 35 FSIFIATVI--FIANIFLF---YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89 FS FIA +I F A ++ F + G G E +VE L L S LL+ Y I Sbjct: 84 FSKFIALLILSFPAQLYYFINNFDGGHILQGFE--IVEYLFL---SFATGLLVFYACNYI 138 Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQI 142 K + +++ + D L+ L N F S +K LS+ DID+FK+I Sbjct: 139 DKSNLV-IQTLTETAMTDSLTNLPNMRFFTQQFAWIFNKSLKKKAPLSLFIIDIDHFKEI 197 Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND GH G+ V+A S L F R+GGEEFA +AA++A+ +R+ Sbjct: 198 NDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVDATQAALIADHIRE 257 Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IE ++ + S +TIS G+A C ++ ADQALY AK+SGRN++ Sbjct: 258 EIERAKFPYTP-TSGQVTISIGVATANCSFSTTESLFEAADQALYQAKQSGRNQI 311 >gi|299771575|ref|YP_003733601.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter sp. DR1] gi|298701663|gb|ADI92228.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter sp. DR1] Length = 684 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 96/177 (54%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + ++ LS +D L+ L N +S ++K++ ++ D+D FK +ND Sbjct: 246 ELRKANKELANLSILDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH VGD+++ ++++L + R+GG+EF A ++ EA +LA + ++I+ Sbjct: 306 AFGHHVGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTNADEAVVLAEKVLQLIQ 365 Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S QI SG I+I+ S G+A H + + ++ AD A+ ++K+ GRN FS Sbjct: 366 ESYQI---SGKEINISASLGVALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTIFS 419 >gi|225569376|ref|ZP_03778401.1| hypothetical protein CLOHYLEM_05460 [Clostridium hylemonae DSM 15053] gi|225162175|gb|EEG74794.1| hypothetical protein CLOHYLEM_05460 [Clostridium hylemonae DSM 15053] Length = 604 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 13/174 (7%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQ 141 ISG KE+ + + + R D LSGLLN AF + Y ++ + D+D FK Sbjct: 434 ISGEKKKEMAL----VRKAER-DNLSGLLNRGAFKEQVQEYIQQSQGGCLFLIDLDNFKD 488 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILANDL 199 IND +GH GD+ I + + L F +GR GG+EF A G ++ A+ + Sbjct: 489 INDKYGHLAGDESIRKVGEVLKTCFRAKDIIGRYGGDEFFAFVPGRMTRDVIDGRAADVV 548 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 K+ + I + P +H T S GI + RAD+A+Y AK G+N Sbjct: 549 HKV---AAITLDEAPDLHFTCSVGIVRCGEGSTFKDCLKRADEAMYKAKDRGKN 599 >gi|207742852|ref|YP_002259244.1| signal transduction protein ggdef domain [Ralstonia solanacearum IPO1609] gi|206594246|emb|CAQ61173.1| signal transduction protein ggdef domain [Ralstonia solanacearum IPO1609] Length = 532 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 18/189 (9%) Query: 84 YISGSILKELFISYNRIS--QLSRI------DCLSGLLNHSAFISSL---GSYNEKLSIV 132 YI LK + R+S +++R+ D L+GL N +L ++ S V Sbjct: 328 YIEAHRLKRALLRGTRLSSSRMARLNHEALTDPLTGLYNRRGVADALRLLAGRHQPFSAV 387 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK+IND GH VGD+V+ ++ + GR+GGEEF ++ + A Sbjct: 388 TLDVDHFKRINDRDGHDVGDQVLKHIAALIREQARHDDITGRIGGEEFILLLPDATPEGA 447 Query: 193 AILANDLRKIIENSQINISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250 A LR+ +E P+ +T+S G+A+ E + ++ +D ALY AK+S Sbjct: 448 FKTAERLRRAVE-----ARPNPTGQVVTVSLGVADYPGASEEVDAVLKLSDLALYQAKRS 502 Query: 251 GRNRVVCFS 259 GRNR V + Sbjct: 503 GRNRTVLYQ 511 >gi|92112821|ref|YP_572749.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043] gi|91795911|gb|ABE58050.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043] Length = 413 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 8/190 (4%) Query: 81 LLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAFISSLGSYNE---KLSIVF 133 ++G + G +L L R+ + R D L+G LN A +S + ++V Sbjct: 194 MMGMLFGGVLMGLEGVTERLERTYRREALHDMLTGALNRRAILSIAERWRRAQCPFALVL 253 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D+FK+ ND GH GD + L + L +GR GGEEF G + A Sbjct: 254 LDVDHFKRFNDLHGHATGDAALCHLVNCLQQGLREGDMLGRYGGEEFMLLLPGMTRGAAM 313 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +A + ++ + + S+ +T+S GIA + +I AD+ LY AK +GR+ Sbjct: 314 TVAERIAALVREQPLALPD-KSLGMTVSQGIAAEDEAATLGEMIELADRRLYAAKHAGRD 372 Query: 254 RVVCFSDIEN 263 RV+ + E Sbjct: 373 RVMAWDAFET 382 >gi|288960570|ref|YP_003450910.1| GGDEF domain-containing protein [Azospirillum sp. B510] gi|288912878|dbj|BAI74366.1| GGDEF domain-containing protein [Azospirillum sp. B510] Length = 379 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 15/160 (9%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N AF +++ ++ +S++ DID+FK IND+ GH GD V+ L Sbjct: 208 DPLTGLANRRAFFAAIDRAVAGGLRHDMPVSLLMLDIDHFKDINDSHGHDAGDAVLVALG 267 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEFA G+ A ILA LR + + I+ + G + +T Sbjct: 268 RLLQGGVRQSDLVARFGGEEFAILLPGAPADGAFILAERLRGAVRDLSIH-ADGAILGVT 326 Query: 220 ISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G++ + C + +I AD ALY AK+ GR+RV Sbjct: 327 VSIGLSSLGPDLCRAD---LLIKTADMALYRAKQGGRDRV 363 >gi|262280147|ref|ZP_06057932.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|262260498|gb|EEY79231.1| response regulator [Acinetobacter calcoaceticus RUH2202] Length = 473 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L F+ S+ Y E + FF D+D+FK +NDN+GH +GD+ + Sbjct: 312 DELTSSLTRRQFLQSVRLLQEKVYKENKTSAFFMLDVDHFKHVNDNYGHQIGDRALQTCV 371 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + +GR GGEEFA ++++ A LA +R I I I I I Sbjct: 372 TTIQNILHPHDLLGRFGGEEFAIFIADTTKESAFDLAEQIRIKISQQPIYIYGKLPIFIQ 431 Query: 220 ISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S GI + H+ I + AD ALY AK+ GRNRV Sbjct: 432 VSIGISLYSPSSHRA-IENLFKEADDALYQAKRQGRNRV 469 >gi|220923248|ref|YP_002498550.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060] gi|219947855|gb|ACL58247.1| diguanylate cyclase [Methylobacterium nodulans ORS 2060] Length = 353 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 11/168 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+G+ N F + + + ++++ DID+FK+ ND +GH G Sbjct: 177 RVESLT--DPLTGIGNRKLFEEVLHKAVGDAVANRQSIALIVLDIDHFKRFNDVYGHLTG 234 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INI 210 D+V+ ++ + + + + R GGEEF +A LA +R + + + Sbjct: 235 DRVLRLVALTMREMVDSRATIARFGGEEFGVIVPYGGRDDALDLAERIRTSVMGRELVKR 294 Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 SSG S+ +T+S G+A + ++I RADQ ++ AK+SGRNRVV Sbjct: 295 SSGESLGRVTVSVGVAAYRAGDTAVSLIERADQCMFAAKRSGRNRVVV 342 >gi|107104589|ref|ZP_01368507.1| hypothetical protein PaerPA_01005668 [Pseudomonas aeruginosa PACS2] Length = 671 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + D L+GL N +A L + L + DID+FK+IND+FGH GDKV Sbjct: 509 QKALTDPLTGLPNRAALSERLEQEVARRQRDGGDLLLAVLDIDHFKRINDDFGHLAGDKV 568 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ +L F+ R GGEEF +S + L LR I + P Sbjct: 569 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEP 628 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT SAGI E + RADQALY AK++GR+R+ Sbjct: 629 -LSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRL 668 >gi|16759363|ref|NP_454980.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142865|ref|NP_806207.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161857|ref|ZP_03347567.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427798|ref|ZP_03360548.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213852998|ref|ZP_03382530.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25513094|pir||AH0549 adrA protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501654|emb|CAD08840.1| adrA protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138497|gb|AAO70067.1| adrA protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 370 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 232 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH GD+ I L+ QL + +GR GG+EF Sbjct: 233 HSRRHHREATLLIIDIDHFKSINDTWGHDAGDEAIIALTRQLQITLRGSDIIGRFGGDEF 292 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 293 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 343 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 344 YREWLKSADMALYKAKNAGRNRT 366 >gi|297539263|ref|YP_003675032.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera sp. 301] gi|297258610|gb|ADI30455.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera sp. 301] Length = 436 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 9/159 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N AF G E+ LS++ D D+FK++ND FGH GD+V+ LS Sbjct: 268 DHLTGISNRRAFFEVAGIEFERCKKRPRPLSLLAIDADHFKKVNDTFGHATGDEVLKHLS 327 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R+GGEEF+A + Q A +A +R I S + + +G I T Sbjct: 328 AVLQDCVREMDLVARIGGEEFSALLPSTDMQGAIKIAERIRSSIAESLLEV-NGQKIRYT 386 Query: 220 ISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 +S G++ I ++ AD+ALY +K GRNRV Sbjct: 387 VSIGVSTVNENVTGIDMLLKIADEALYASKHGGRNRVTA 425 >gi|284990682|ref|YP_003409236.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160] gi|284063927|gb|ADB74865.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160] Length = 345 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 15/196 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQL-------SRIDCLSGLLNHS------AFISSLGSY 125 ++ +G + + L + NR+ +L + +D L+GL+ + S S Sbjct: 150 AVFIGMVHAATAGLLVLVKNRVERLMSALERQAAVDGLTGLVTRRVLDDALSSALSASST 209 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAA 184 E ++V D+D FK IND GHPVGD + L+ L V +GRLGG+E A Sbjct: 210 PEGTALVLVDVDTFKNINDLHGHPVGDDALVHLAGVLRRHVRSQDAVLGRLGGDELAVLL 269 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQA 243 G AA A L + + + ++ G + +++S GIA H + T+ AD A Sbjct: 270 PGCWAATAAERAEHLVTAVRATPLQLADGTLLALSVSVGIAHAPQHATELRTLYAAADGA 329 Query: 244 LYVAKKSGRNRVVCFS 259 LY AK++GR+R V S Sbjct: 330 LYEAKRTGRDRAVLAS 345 >gi|260855930|ref|YP_003229821.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368] gi|257754579|dbj|BAI26081.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368] Length = 564 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 371 TMLLISWYVIRRMVSNMYVLQSSLHWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 430 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 431 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 491 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 550 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 551 KQAGRNRV 558 >gi|261419237|ref|YP_003252919.1| response regulator receiver modulated diguanylate cyclase [Geobacillus sp. Y412MC61] gi|319766053|ref|YP_004131554.1| response regulator receiver modulated diguanylate cyclase [Geobacillus sp. Y412MC52] gi|261375694|gb|ACX78437.1| response regulator receiver modulated diguanylate cyclase [Geobacillus sp. Y412MC61] gi|317110919|gb|ADU93411.1| response regulator receiver modulated diguanylate cyclase [Geobacillus sp. Y412MC52] Length = 542 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 86/186 (46%), Gaps = 16/186 (8%) Query: 85 ISGSILKELFISYNRISQLSR-------IDCLSGLLNHS-------AFISSLGSYNEKLS 130 I+ ELF+ R+ + R ID L+G+ N S L Sbjct: 205 ITTPAADELFVRVRRLVEKKRKIDDLVLIDELTGVYNRKYLPQVYVRLRSELERSGTPSC 264 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + D+D+FKQIND FGH GD V+ L+ L V RLGGEEF +S+ Sbjct: 265 LALLDLDHFKQINDRFGHLAGDAVLQKLAAFLRQHTRGVDTVVRLGGEEFVVWLAKTSKS 324 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKK 249 EA + LR+ I+ + G + T SAG+ E C +P+ + AD+ALY AK+ Sbjct: 325 EARAVLERLRRQFAAETID-ADGERLSCTFSAGLVEFCDPDQPLDYWLRVADRALYAAKR 383 Query: 250 SGRNRV 255 G NR+ Sbjct: 384 GGGNRI 389 >gi|209525726|ref|ZP_03274263.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209493895|gb|EDZ94213.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 774 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 16/166 (9%) Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ ID L+G+ N + I G + + L D+D FK IND +GH GD V+ Sbjct: 612 IAEIDTLTGIENRYKSTEDINRLIRIAGRHKQPLCFAILDLDNFKDINDQYGHDTGDWVL 671 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + L F VGR GGEEFA A G+ +Q+A L+K++E ++ + P Sbjct: 672 HRFGEVLKKAFRQEDIVGRWGGEEFAVAMYGTYKQDA---MKRLQKVLEEWRLEVLV-PE 727 Query: 216 IHI----TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 HI T S G+A+ ++YR AD L AK+ GRN+++ Sbjct: 728 DHIAFSVTFSGGVAQYPEDGHDLQLLYRVADANLDQAKQGGRNQII 773 >gi|73543082|ref|YP_297602.1| GGDEF [Ralstonia eutropha JMP134] gi|72120495|gb|AAZ62758.1| GGDEF [Ralstonia eutropha JMP134] Length = 584 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 93/199 (46%), Gaps = 26/199 (13%) Query: 84 YISGSILKELFISY----NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132 +I+ ++ +LF Y ++ +++R D L+GL N S E+ L++V Sbjct: 373 WITLKVVTQLFDHYIALGEKLQEIARQDPLTGLANRRRMRELAQSEFERQKRDGQPLALV 432 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK++ND++GH GDKV+ L+ + RLGGEEFA +S EA Sbjct: 433 MIDIDFFKKVNDHWGHASGDKVLVELARTMRANLRNVDQPARLGGEEFAVLMPNTSLAEA 492 Query: 193 AILANDLRKIIENSQINIS-------SGPSIHITISAGIAERCHKEPISTIIYR------ 239 A A LR+ I + + I TIS G+AE E + Sbjct: 493 AQSAERLRRAIAACVVEADLEACVERADRIIRFTISVGVAE-ARGEAADGVPMTLDGLAA 551 Query: 240 -ADQALYVAKKSGRNRVVC 257 AD+ LY AK GRNRVV Sbjct: 552 IADRRLYDAKTQGRNRVVS 570 >gi|310657329|ref|YP_003935050.1| hypothetical protein CLOST_0013 [Clostridium sticklandii DSM 519] gi|308824107|emb|CBH20145.1| exported protein of unknown function [Clostridium sticklandii] Length = 525 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 5/152 (3%) Query: 107 DCLSGLLNHSAFISSLG-SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 D ++GL N + IS + + +++ DID FK IND +GH +GD VI +S + V Sbjct: 376 DNMTGLFNRAEIISIYEINMDRDIALGVIDIDDFKNINDTYGHAIGDIVIKDISSIIQNV 435 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 G +VGR GGEEF S + ++ L ++R IEN + P IT+S G+ Sbjct: 436 VGDKGYVGRYGGEEFLVILNKSDQYDSKKLLEEIRISIENKKWFFKDSP---ITVSIGLL 492 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + AD+ LY+AK++G+N ++C Sbjct: 493 NEAKNTSFNNGFKVADELLYLAKRNGKN-IIC 523 >gi|238752626|ref|ZP_04614098.1| Predicted diguanylate cyclase [Yersinia rohdei ATCC 43380] gi|238709140|gb|EEQ01386.1| Predicted diguanylate cyclase [Yersinia rohdei ATCC 43380] Length = 361 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 7/185 (3%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141 + ++ L+ + S LS ID L+GL N F + L + + ++ DID+FK Sbjct: 172 TRKLVAHLYNEREKFSDLSMIDPLTGLYNRRGFENKLETLLAQSPGNHYVLLLDIDHFKA 231 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 NDN+GH +GD+ + ++ + + V R GGEEF SE+ A LA +R+ Sbjct: 232 YNDNYGHTMGDQALVRVAVAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYATQLAERVRQ 291 Query: 202 IIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + I + S +T+SAG++ +++ + AD+ALY AKK GRN+V Sbjct: 292 RVLSLDIPHVFNHKVSTSVTLSAGVSP-LQSYDLTSSLKAADEALYRAKKDGRNKVAFAE 350 Query: 260 DIENN 264 + + N Sbjct: 351 EKQPN 355 >gi|146294393|ref|YP_001184817.1| diguanylate cyclase [Shewanella putrefaciens CN-32] gi|145566083|gb|ABP77018.1| diguanylate cyclase [Shewanella putrefaciens CN-32] Length = 324 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 9/170 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L + ++ +LS+ D L+ L N + L YN+ S+V DID FK IND Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQLCLEHEFDLYARYNDIASLVMIDIDNFKYIND 203 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GDKVI ++ L GR GGEEFA +S ++A LR+ I Sbjct: 204 TYGHVAGDKVIQHIAHILSQSLRETDCAGRYGGEEFAVVMPKTSGEDALHFTERLREKIA 263 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 S I + I +T+S G+ E H S+ I +D+ALY AK+ GRN Sbjct: 264 ESTI-VYESLKIKVTVSLGVCEIGKHISSSSSWISCSDKALYEAKQKGRN 312 >gi|229061718|ref|ZP_04199052.1| Sensory box/GGDEF family protein [Bacillus cereus AH603] gi|228717567|gb|EEL69229.1| Sensory box/GGDEF family protein [Bacillus cereus AH603] Length = 430 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L +EK++++ FDID FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILELEWDNAVRNDEKIALILFDIDNFKSVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L+D + R GGEEF + E+EA +A LR IE Sbjct: 321 FGDLALVQLADLMKSKVEDQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKHF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --SGIS-KLTASFGVALYEQGITREELMQRADIALYEAKKNGKNQVCIY 425 >gi|39996055|ref|NP_952006.1| GGDEF domain-containing protein [Geobacter sulfurreducens PCA] gi|39982820|gb|AAR34279.1| GGDEF domain protein [Geobacter sulfurreducens PCA] gi|307634775|gb|ADI83801.2| diguanylate cylase [Geobacter sulfurreducens KN400] Length = 430 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 18/177 (10%) Query: 101 SQLSRI---DCLSGLLN-----HSA---FISSLGSYNEK-----LSIVFFDIDYFKQIND 144 ++L RI D L+G+ N H A F + ++ L I+ D+D+FKQIND Sbjct: 238 AELKRIAVTDPLTGIANRRQIIHRATEEFARQMRRKQQRTAVPSLGIIMADVDHFKQIND 297 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD V+ ++ ++ V VGR GGEEF + +E +A +R+ + Sbjct: 298 TYGHSAGDDVLREIASRIGSVLRQYDAVGRYGGEEFLVILSETELEETWHIAERIRRRVA 357 Query: 205 NSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + + I ++ S GIA E + RAD+ LY+AK +GRNRV+C D Sbjct: 358 DDPV-VVDNQVIRVSASLGIATVLAGEADYRPALERADKGLYLAKTAGRNRVMCAGD 413 >gi|260462930|ref|ZP_05811134.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum WSM2075] gi|259031324|gb|EEW32596.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum WSM2075] Length = 737 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 17/186 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 +L S +RI QL+ D L+ L N F +S L S E+L++++ D+D FKQ+ND Sbjct: 298 KLIESEDRIFQLAHNDLLTALPNRGQFNDRLADALSRLPSTGEQLAVLYLDLDRFKQVND 357 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL---- 199 FGHP GD+++ +D+L + V RLGG+EF + E E L L Sbjct: 358 TFGHPAGDELLREFADRLRRLTTEADTVARLGGDEFIIIKRSVAGEDEVRTLCEHLLESA 417 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 R+ + + + G +++ A A R E + ++ +AD ALY AK GR+ F+ Sbjct: 418 RRPFQVAGAQVFVG----VSVGAAFAPRDGLEWVE-LVRKADVALYHAKARGRSSYAFFA 472 Query: 260 DIENNT 265 + T Sbjct: 473 TEMDQT 478 >gi|261406493|ref|YP_003242734.1| PAS/PAC sensor-containing diguanylate cyclase [Paenibacillus sp. Y412MC10] gi|261282956|gb|ACX64927.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. Y412MC10] Length = 539 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 29/188 (15%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPV 150 + Q++ D L+ + N S F+ SY E L+ + FDID+FK+IND +GH + Sbjct: 356 LRQMAYYDGLTRIYNRSHFMKL--SYALLNQAVRNREPLAFLLFDIDHFKRINDVYGHDI 413 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + + + R GGEEFA A G S EA A +R + + Sbjct: 414 GDQALQHIVELTRKTLRAEDLFARYGGEEFAVAMPGQSTSEATAAAERIRAKLLAQPMTT 473 Query: 211 SSGPSIHITISAGIA----------------ERCHKEPISTIIYRADQALYVAKKSGRNR 254 G S+ IT S G+A E + ++ +AD+ALY AK+SGRN Sbjct: 474 PQG-SLMITASFGVAAVKTSSHNGTVDAEAEEAWWDTELKKVLKQADRALYEAKRSGRN- 531 Query: 255 VVCFSDIE 262 + SD E Sbjct: 532 TIRVSDEE 539 >gi|172063524|ref|YP_001811175.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] gi|171996041|gb|ACB66959.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] Length = 492 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 14/193 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I +S++LG + L+ + + + L+R D L+GL N +F L + Sbjct: 300 IAVSVMLG----TQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRSRSV 355 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 S++F D+D FK ND +GH GD +A ++ + P R GGEEF + Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 415 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALY 245 E AA +A +R I+ + + H+T S G+A + + ++I AD+ALY Sbjct: 416 PETGAAQIAERIRAAIDELALEHAGSEHGHVTASIGLASWTPDDDVEAGSVIKAADEALY 475 Query: 246 VAKKSGRNRVVCF 258 AK +GRN+V F Sbjct: 476 YAKATGRNKVAAF 488 >gi|116327587|ref|YP_797307.1| GGDEF domain-containing protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331802|ref|YP_801520.1| GGDEF domain-containing protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120331|gb|ABJ78374.1| GGDEF domain protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125491|gb|ABJ76762.1| GGDEF domain protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 323 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 26/204 (12%) Query: 84 YISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAFISSLG------ 123 Y++G + E+ S +ISQL+ D L+ L N AF L Sbjct: 108 YVTGKDISEMIESNRKISQLAAELKVANDKLFEQACTDPLTKLKNRRAFNEDLNRLIHLA 167 Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + LS++ D+D+FK NDNFGHP GDKV+ ++ L + R GGEEF Sbjct: 168 QNQGTSLSLLMIDVDFFKDYNDNFGHPAGDKVLIEIALLLTRALRKCDVLARYGGEEFII 227 Query: 183 AALGSSEQEAAILANDLRKII-----ENSQINISSGPSIHITISAGIAERCHKEPISTII 237 A +S+ ++ + L + I E I IS G S G + ++ +I Sbjct: 228 ALPDASQTDSVEITERLIQTIREFSWEKRPITISIGISTLTFPLGGTLPIENNACLTNLI 287 Query: 238 YRADQALYVAKKSGRNRVVCFSDI 261 AD+ALY +K GR+R F++I Sbjct: 288 ESADRALYASKTEGRDRFTHFTEI 311 >gi|291279366|ref|YP_003496201.1| signal transduction response regulator [Deferribacter desulfuricans SSM1] gi|290754068|dbj|BAI80445.1| signal transduction response regulator [Deferribacter desulfuricans SSM1] Length = 427 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 10/161 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ ID L+ L N F Y SI+ DID FK IND +GH +GD V+ Sbjct: 268 LATIDDLTQLYNRRFFWELARKEENRYIRYKRDYSIIILDIDDFKMINDTYGHDIGDTVL 327 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S + + R GGEEF + + A +A +R+ I + Q + Sbjct: 328 KEISKSVRSNIRKSDILARFGGEEFIILLPETEKNGAKAVAEKIRQSINDKQF---THFK 384 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +HIT+S G++ R + I AD LY AK SG+N+VV Sbjct: 385 LHITVSLGVSSRTEANDLEETIKIADNRLYKAKNSGKNKVV 425 >gi|89900099|ref|YP_522570.1| diguanylate cyclase [Rhodoferax ferrireducens T118] gi|89344836|gb|ABD69039.1| diguanylate cyclase [Rhodoferax ferrireducens T118] Length = 256 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +++ +LS D L+GL N F I ++ E ++ DID+FK++ND +GH Sbjct: 40 DQLCELSLKDPLTGLANRRHFRHVLGREIDAVARSGESALLLMMDIDHFKKVNDTYGHLA 99 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++ L V R GGEEF A I+A +R + + Q+ + Sbjct: 100 GDRVLQAVAKALASCLRPMDTVARYGGEEFTAILPNCPPSFGKIVAERIRATVGSLQVLV 159 Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + S+ +TIS G A + + I RAD LY AK GRNRV Sbjct: 160 APLVSLQVTISIGGAFAPEWVRSTTALWIDRADTQLYRAKSEGRNRV 206 >gi|15601692|ref|NP_233323.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|153821053|ref|ZP_01973720.1| sensory box/GGDEF family protein [Vibrio cholerae B33] gi|229510225|ref|ZP_04399705.1| sensory box/GGDEF family protein [Vibrio cholerae B33] gi|229517645|ref|ZP_04407090.1| sensory box/GGDEF family protein [Vibrio cholerae RC9] gi|229605453|ref|YP_002876157.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236] gi|254850103|ref|ZP_05239453.1| sensory box/GGDEF family protein [Vibrio cholerae MO10] gi|9658376|gb|AAF96835.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126521427|gb|EAZ78650.1| sensory box/GGDEF family protein [Vibrio cholerae B33] gi|229345681|gb|EEO10654.1| sensory box/GGDEF family protein [Vibrio cholerae RC9] gi|229352670|gb|EEO17610.1| sensory box/GGDEF family protein [Vibrio cholerae B33] gi|229371939|gb|ACQ62361.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236] gi|254845808|gb|EET24222.1| sensory box/GGDEF family protein [Vibrio cholerae MO10] Length = 321 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+ L N + + LS + DID FK IND FGH G Sbjct: 152 QLYQLANTDSLTQLCNRRKLWADFRAAFARAKRLRQPLSCISIDIDNFKLINDQFGHDKG 211 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ FL+ V F GR+GGEEF + + A LA +R+ + Sbjct: 212 DEVLCFLAKLFQSVISDHHFCGRVGGEEFIIVLENTHVETAFHLAEQIRQ-------RFA 264 Query: 212 SGP----SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 P + HI + AG++ H + I+ I R+DQALY AK++GRNR + Sbjct: 265 EHPFFEQNEHIYLCAGVSSLHHGDHDIADIYRRSDQALYKAKRNGRNRCCIY 316 >gi|148548425|ref|YP_001268527.1| diguanylate cyclase [Pseudomonas putida F1] gi|148512483|gb|ABQ79343.1| diguanylate cyclase with GAF sensor [Pseudomonas putida F1] Length = 345 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 12/189 (6%) Query: 79 SLLLGYIS----GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEK-- 128 +L GY+ + + L + +R + + +D L+ L N A + L E+ Sbjct: 152 TLTEGYLQLRSLAQVNRALRVEMDRGQRRALLDPLTQLWNRGALAAFQNRELRLAEERGL 211 Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 L V+ D+D FK +ND GH GDKV+ + +L + R GGEEF A Sbjct: 212 QLGAVYADLDRFKSVNDEHGHDAGDKVLCECARRLRATLRPDDLLVRQGGEEFVALLRVK 271 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 QE +A LR+ I ++ + GP +T+S G E I I RAD LY A Sbjct: 272 DSQELTQIAERLRQSIGSTPFLMPGGPR-KMTMSIGCTLLTQGEQIDDAIKRADGGLYAA 330 Query: 248 KKSGRNRVV 256 K GR++VV Sbjct: 331 KHGGRDQVV 339 >gi|294828213|ref|NP_713106.2| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] gi|293386063|gb|AAN50124.2| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] Length = 313 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 90/186 (48%), Gaps = 21/186 (11%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEK---LSIVFFDIDYFKQIND 144 EL + +++ + + D L+ L N F L N+K LS++ D+D+FK ND Sbjct: 131 ELKDANDKLFEQASTDPLTKLKNRRTFNEELKDLIVHTNKKRGFLSLLMIDVDHFKTYND 190 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGHP GD+V+ L+ L + R GGEEF A + E +A +A+ L I+ Sbjct: 191 QFGHPAGDQVLIRLASVLTYALRVSDLLARFGGEEFVVALPETGEYKAIEVADRLVVTIQ 250 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---------IIYRADQALYVAKKSGRNRV 255 + + ITIS GIA P+ST I+ AD+ALY +K +GRN+ Sbjct: 251 K-----ETWENRPITISVGIATLDFSLPVSTFRDTDFSTRIVEEADRALYRSKANGRNQA 305 Query: 256 VCFSDI 261 S I Sbjct: 306 THCSQI 311 >gi|158520662|ref|YP_001528532.1| serine/threonine protein kinase [Desulfococcus oleovorans Hxd3] gi|158509488|gb|ABW66455.1| serine/threonine protein kinase [Desulfococcus oleovorans Hxd3] Length = 1644 Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S+ + D L+GL NH F + L +LS++ DID+FK+ ND +GH GD Sbjct: 1477 LSRKAVTDGLTGLYNHDYFQNMLQQELLLAKRKGRELSMIMIDIDHFKRFNDTWGHQAGD 1536 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ ++ + V R GGEE A + + A LA +R+ +E ++ + Sbjct: 1537 MVLREVAAEIRESCRSSDVVARYGGEEMALLLHETGPEAAFALAEKIRRRVEALRVEHAP 1596 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + +TIS G+A H + ++ +AD ALY +K GRN V Sbjct: 1597 GEYLQVTISLGVAGFPIHAKNKKPLVKKADDALYSSKAGGRNMV 1640 >gi|117926223|ref|YP_866840.1| response regulator receiver modulated diguanylate cyclase [Magnetococcus sp. MC-1] gi|117609979|gb|ABK45434.1| response regulator receiver modulated diguanylate cyclase [Magnetococcus sp. MC-1] Length = 438 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 14/174 (8%) Query: 92 ELFISYNRISQLSRI---DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +L++ +I+ L + D L+G N S + Y +SI+ DID+FK+ Sbjct: 258 DLYLIQRKINDLEKKVYHDPLTGAANRSRLYEKFHEEMKRSERYGSPVSILMLDIDHFKR 317 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND +GH GD+V+ + ++ VGR GGEEF A + A +A ++R+ Sbjct: 318 VNDTYGHNAGDEVLLEVVKRMQGHVRVTDLVGRWGGEEFLLIAPETVLGAALEVAENIRR 377 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +I I G +T S G+ + E ++T + R D ALY AKK GR+RV Sbjct: 378 LIG----QIPFGQVGRVTCSIGVGQLAKGESMNTCLERVDAALYRAKKQGRDRV 427 >gi|302059667|ref|ZP_07251208.1| GGDEF [Pseudomonas syringae pv. tomato K40] Length = 512 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 114/242 (47%), Gaps = 30/242 (12%) Query: 34 FFSIFIATVIF---IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90 FSIF+ V++ + ++ ++ + L Y ++ E V+ S +LL + +L Sbjct: 1 MFSIFLLAVVWEFKLESLAMYAMDLP--YDPDFEDAERWRFVLTSTAFALLSMVVPFILL 58 Query: 91 KELFI----SYNRI-------SQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFD 135 K L SYN + L+R D LSGLLN H ++ L + + ++ D Sbjct: 59 KRLMQRLQSSYNDLLVAQALSDSLARHDPLSGLLNRRVFHEQLVARLQQESTRTAVFLID 118 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ-EAA 193 +D FK IND GH VGD I +++ L G V RLGG+EF A G Q E A Sbjct: 119 LDKFKLINDTHGHAVGDAAICAVAESLRDATAGWQASVARLGGDEFGLAVSGDFNQFELA 178 Query: 194 ILANDLRKIIENSQINISSG--PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250 LA ++ ++I +SS P + ++ + G+A ++ RAD A+Y K S Sbjct: 179 TLAENVL-----AKIALSSAVLPRVILSATLGVAISPLDGSDAEVLLQRADSAMYRGKHS 233 Query: 251 GR 252 GR Sbjct: 234 GR 235 >gi|262404002|ref|ZP_06080557.1| GGDEF family protein [Vibrio sp. RC586] gi|262349034|gb|EEY98172.1| GGDEF family protein [Vibrio sp. RC586] Length = 358 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 124/253 (49%), Gaps = 19/253 (7%) Query: 8 FLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE 67 +L + L KN + P ++ ++ ++ + V++I + + L + I+V+ Sbjct: 114 YLGVALIAAKNGQRGRPEQTLL--AVVLAMMM-VVLYIPLVAYQTLPLMAVFRAATIVVQ 170 Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGS 124 NL II T+ +L + +E I ++R+ + D L+G N F + + Sbjct: 171 NLFFFIILGTMLMLF------LFEE--IEWHRLRSIR--DELTGSFNRRYFKELVQRQLN 220 Query: 125 YNEKLSIV-FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 +E SI+ DID+FKQIND +GH +GD+VI F+ L + V R GGEEFA Sbjct: 221 QSEAASIIALVDIDHFKQINDTYGHDIGDEVITFVVQNLESLNLMDCVVARYGGEEFAIF 280 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 A + E A + +R I +I P + +++S G+ ++ +AD+A Sbjct: 281 ARENDEARVAKALDTVRDEIACG-FSIDDQP-LRVSVSIGVVMLDTSYDYGEVLRQADKA 338 Query: 244 LYVAKKSGRNRVV 256 LY AK+ GRNRV+ Sbjct: 339 LYQAKQQGRNRVM 351 >gi|257061570|ref|YP_003139458.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8802] gi|256591736|gb|ACV02623.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8802] Length = 660 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 19/208 (9%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125 E +SL + S+ L + +L++L + +++ L+ +D L+ + N F L Sbjct: 453 EEMSL-LESVAAQLGIAIAHSHLLEQLKEANEKLAALANLDGLTQVANRRHFDEILAQRW 511 Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGE 178 + LS++ D+DYFK+ ND +GH +GD+ + ++ + P V R GGE Sbjct: 512 KQCAREKQPLSLIMCDVDYFKRYNDLYGHQMGDECLIKVAQTIAKTVQRPGDLVARWGGE 571 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA---------ERC 228 EFA + +A +R+ +++ I P ++IS GIA E Sbjct: 572 EFAVILPNTDVNGVKYIAQSIREQVQSLAIIHEDSPIKNQVSISLGIATIIPPAKTLENN 631 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256 H+ I +I +ADQALY AK+ GR+R+ Sbjct: 632 HESLIKALIAQADQALYQAKEQGRDRIA 659 >gi|160878694|ref|YP_001557662.1| diguanylate cyclase [Clostridium phytofermentans ISDg] gi|160427360|gb|ABX40923.1| diguanylate cyclase [Clostridium phytofermentans ISDg] Length = 604 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 19/169 (11%) Query: 107 DCLSGLLNHSAFISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GLLN A I+ L +K + D+D FK IND++GH VGD+ I +++ Sbjct: 259 DALTGLLNKRA-ITQLAEQKIQYTGKDKFRFLILDVDNFKTINDSYGHMVGDEAIVRVAN 317 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHIT 219 + + G VGR+GG+E A L + + E + L N L+ I EN + + S +IHIT Sbjct: 318 IVKKMVGDHGVVGRIGGDEL-FAILDNVDDEKS-LRNVLKAIRENVAYAYVGSENNIHIT 375 Query: 220 ISAGIAERCHKEPISTIIY-----RADQALYVAKKSGRNRVVCFSDIEN 263 S G AE P + Y +AD +LY+AK+ G+NR + ++ +++ Sbjct: 376 CSMGCAEY----PTDGVSYKELFQKADYSLYLAKEKGKNRYIIYNPLKH 420 >gi|296156788|ref|ZP_06839626.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. Ch1-1] gi|295893387|gb|EFG73167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. Ch1-1] Length = 667 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 11/182 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYF 139 SG+ + E ++ R+++L+ D L+GL N +A + + E + ++F D+D F Sbjct: 220 SGTDITEERLAQERLTELANTDSLTGLANRNAIQDRIRAAIEDAAPGEAVGVLFLDLDNF 279 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K++ND++GH GD++I +S + + + RLGG+EF A + E + A Sbjct: 280 KKVNDHYGHVFGDRLIRDVSAAISLCLNEGDTLARLGGDEFIVLAAKGTAHELEVTA--- 336 Query: 200 RKIIENSQINISSG-PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++I+E + S G ++ S GIA H + + ++I AD A+YVAK G+ Sbjct: 337 QRILERMRTPFSLGLVEVYTGCSIGIALYPEHGDSLESLIRSADTAMYVAKDEGKRTHRV 396 Query: 258 FS 259 FS Sbjct: 397 FS 398 >gi|295098029|emb|CBK87119.1| diguanylate cyclase (GGDEF) domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 459 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 11/174 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYF 139 ++L+ELF +R +D L+ LLN F+ ++ KLS + D+D F Sbjct: 281 TLLRELFDEVSR--HEVGVDVLTRLLNRR-FLPTIFKREILHATRAGTKLSTLLIDVDKF 337 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 KQIND +GH GD+++ +S T +V R GG+EF SE +A +A + Sbjct: 338 KQINDTWGHNTGDEILRKVSGAFYDNVRTCDYVFRYGGDEFLIVLTEISEVDALRIAERI 397 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 R+ +E ++N +G I +++S G+A +I AD+ALY AK+ GRN Sbjct: 398 RRRVEKIKVNSPTGDIIPLSLSIGVAMFNGHPDYERLIQAADEALYGAKRRGRN 451 >gi|147671427|ref|YP_001215475.1| sensory box/GGDEF family protein [Vibrio cholerae O395] gi|146313810|gb|ABQ18350.1| sensory box/GGDEF family protein [Vibrio cholerae O395] gi|227015240|gb|ACP11449.1| sensory box/GGDEF family protein [Vibrio cholerae O395] Length = 642 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ + DID+FK+IND FGH Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 637 >gi|86357960|ref|YP_469852.1| hypothetical protein RHE_CH02345 [Rhizobium etli CFN 42] gi|86282062|gb|ABC91125.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 417 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 89/187 (47%), Gaps = 12/187 (6%) Query: 89 ILKELF-ISYNRIS--QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 IL+EL + +R+ Q + D L+ + AF I+ + LS + FDID+ Sbjct: 154 ILEELAGAAMDRLELMQSAATDSLTEAMTRRAFKQEAEQLIALALRHQHDLSCIVFDIDH 213 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FKQ+ND GH GD V+ ++ GR+GGEEFA A +A Sbjct: 214 FKQVNDRHGHAAGDAVLKAVASACKATLRAGDLFGRIGGEEFAVVLPHVDRDGAVAVAEK 273 Query: 199 LRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +R I + + G +H+T S G A + I T++ +AD A+Y AK GRNR V Sbjct: 274 IRAAIASQPVRSDHG-VLHVTASLGSSALSIVSKEIETLLAQADAAMYQAKNGGRNRCVS 332 Query: 258 FSDIENN 264 +S I + Sbjct: 333 WSSIHAD 339 >gi|15600680|ref|NP_254174.1| hypothetical protein PA5487 [Pseudomonas aeruginosa PAO1] gi|218894590|ref|YP_002443460.1| putative GGDEF domain protein [Pseudomonas aeruginosa LESB58] gi|9951821|gb|AAG08872.1|AE004961_7 hypothetical protein PA5487 [Pseudomonas aeruginosa PAO1] gi|218774819|emb|CAW30637.1| putative GGDEF domain protein [Pseudomonas aeruginosa LESB58] Length = 671 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + D L+GL N +A L + L + DID+FK+IND+FGH GDKV Sbjct: 509 QKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKV 568 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ +L F+ R GGEEF +S + L LR I + P Sbjct: 569 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEP 628 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT SAGI E + RADQALY AK++GR+R+ Sbjct: 629 -LSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRL 668 >gi|15601453|ref|NP_233084.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|121725922|ref|ZP_01679222.1| sensory box/GGDEF family protein [Vibrio cholerae V52] gi|153818589|ref|ZP_01971256.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457] gi|153820677|ref|ZP_01973344.1| sensory box/GGDEF family protein [Vibrio cholerae B33] gi|227812264|ref|YP_002812274.1| sensory box/GGDEF family protein [Vibrio cholerae M66-2] gi|229506142|ref|ZP_04395651.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286] gi|229510000|ref|ZP_04399480.1| sensory box/GGDEF family protein [Vibrio cholerae B33] gi|229516439|ref|ZP_04405886.1| sensory box/GGDEF family protein [Vibrio cholerae RC9] gi|229605674|ref|YP_002876378.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236] gi|254285719|ref|ZP_04960682.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226] gi|297580277|ref|ZP_06942204.1| sensory box/GGDEF family protein [Vibrio cholerae RC385] gi|298499497|ref|ZP_07009303.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757] gi|9658115|gb|AAF96596.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121631687|gb|EAX64055.1| sensory box/GGDEF family protein [Vibrio cholerae V52] gi|126510872|gb|EAZ73466.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457] gi|126521720|gb|EAZ78943.1| sensory box/GGDEF family protein [Vibrio cholerae B33] gi|150424216|gb|EDN16154.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226] gi|227011406|gb|ACP07617.1| sensory box/GGDEF family protein [Vibrio cholerae M66-2] gi|229346320|gb|EEO11291.1| sensory box/GGDEF family protein [Vibrio cholerae RC9] gi|229352445|gb|EEO17385.1| sensory box/GGDEF family protein [Vibrio cholerae B33] gi|229356493|gb|EEO21411.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286] gi|229372160|gb|ACQ62582.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236] gi|297535923|gb|EFH74757.1| sensory box/GGDEF family protein [Vibrio cholerae RC385] gi|297541478|gb|EFH77529.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757] Length = 642 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ + DID+FK+IND FGH Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 637 >gi|323498705|ref|ZP_08103694.1| hypothetical protein VISI1226_02537 [Vibrio sinaloensis DSM 21326] gi|323316221|gb|EGA69243.1| hypothetical protein VISI1226_02537 [Vibrio sinaloensis DSM 21326] Length = 626 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 20/170 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHP 149 R+ LS D L+ L N F L SY N+ + DIDYFK++ND GH Sbjct: 460 ERLRTLSEKDELTQLWNRRKFELELRSYAKLQERYPNQSTCLALLDIDYFKRVNDQLGHD 519 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+VI + + L FV R+GGEEFA +S +A + L++I+ +++ Sbjct: 520 EGDRVITRIGEILQQTLRDTDFVARIGGEEFAVILPHTSIAKAELA---LQRILVAAEL- 575 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VC 257 + +T+SAG+ + ST Y+ AD ALY +K +GRNRV +C Sbjct: 576 ---ASDLSVTLSAGVTDLLAD---STRSYKCADIALYESKTAGRNRVSIC 619 >gi|304310742|ref|YP_003810340.1| hypothetical protein HDN1F_11000 [gamma proteobacterium HdN1] gi|301796475|emb|CBL44683.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length = 433 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 15/168 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + SR D L+G+ N +F + +N LS + FDID+FKQIND +GH GD Sbjct: 257 LERQSRTDHLTGVGNRRSFYENAQREFARSRRHNTLLSFITFDIDHFKQINDIYGHSAGD 316 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ L+D + + R GGEEF + A LA +R +++ + + Sbjct: 317 EVLHGLADVCLAALRREDTLVRTGGEEFGVLLPDTDIVSAFALAERIRVLVKQALL---- 372 Query: 213 GPS---IHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 GP + +++S G+A ++ T+ RAD+ALY AK+ GR+R V Sbjct: 373 GPKDSGLQVSVSLGVAMLSQEDTSFDTLYLRADRALYEAKRGGRDRSV 420 >gi|288549606|ref|ZP_05967561.2| putative GGDEF domain protein [Enterobacter cancerogenus ATCC 35316] gi|288318532|gb|EFC57470.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC 35316] Length = 349 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+ L+ +D L+ N A + L E+ S++ D+D+FK+ ND +GH GD + Sbjct: 186 RLDALAHLDALTQTANRRAMETLLEDATERKKAFSLIMLDVDFFKRYNDTYGHQAGDVCL 245 Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAA----AALGSSEQEAAILANDLRKI-IENSQIN 209 ++ L TP V R GGEEF L +EQ A + LR I +S N Sbjct: 246 TSVAQVLKQSVRTPNDVVSRYGGEEFVVILFDCPLRGAEQVALRIQEKLRAAAIPHSASN 305 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 S ++T+S GIAE + ++ RAD ALY AK++GR+R Sbjct: 306 ASE----YVTVSMGIAEMAEGLAGTELLARADAALYRAKEAGRDR 346 >gi|150377434|ref|YP_001314029.1| diguanylate cyclase [Sinorhizobium medicae WSM419] gi|150031981|gb|ABR64096.1| diguanylate cyclase [Sinorhizobium medicae WSM419] Length = 422 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 74/267 (27%), Positives = 125/267 (46%), Gaps = 27/267 (10%) Query: 18 NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY--------------GLEY 63 N+ F T +I FSI + +A F ++L + P G+ Sbjct: 154 NIMLFVAITAIIIFSIPLAWTVAVASFALALYLIFQLRNPMLDTGSAVAGTLFFTSGIVA 213 Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122 +V ++ I++ + LL + EL + R+ +L++ D L+G+ N + +L Sbjct: 214 TVVARRTMTILA-QKTFLLELRDKRRVAELADANARLERLAKTDPLTGIANRRWMMETLN 272 Query: 123 ---GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRL 175 G+ E+ +++ DID FK +ND GH GD+ + ++ + V V R Sbjct: 273 RLWGAGAERPAGTAMLMCDIDDFKSLNDRLGHAEGDRCLVKVAGIIQSSVRRNRDHVARY 332 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPI- 233 GGEEF G+ Q A A +R +E + + N +S + ++T+S G+A + I Sbjct: 333 GGEEFLVVLPGADVQAALATAERIRASVEAASLPNPASRVAPYVTLSIGVAAQGAAGEII 392 Query: 234 --STIIYRADQALYVAKKSGRNRVVCF 258 + +AD ALY+AKK+GRNRVV F Sbjct: 393 GPERLQNQADTALYLAKKAGRNRVVLF 419 >gi|78356218|ref|YP_387667.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218623|gb|ABB37972.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 674 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 15/173 (8%) Query: 96 SYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147 SY + + Q++ D L+GL N F L ++ E+ L + D+D+FK+IND +G Sbjct: 501 SYQQELEQMTMTDYLTGLFNRRHFFRQLETHLEQYKRRQYNLCVALLDLDHFKRINDTYG 560 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD VI + L V R GGEEF L S +EA + + L K + Sbjct: 561 HMAGDSVIREFALLLKESLRPYDVVARFGGEEFIILLLDSGREEALGILDRLLKKVSGHT 620 Query: 208 INISSGPSIHITISAGIAERCHKEPIS-----TIIYRADQALYVAKKSGRNRV 255 + + G + +T S GIAE + P S I+ ADQ LY+AK +GRN + Sbjct: 621 FD-AEGHHLRVTFSGGIAE-ADELPASELTPKRIVAAADQRLYLAKTAGRNTI 671 >gi|329925320|ref|ZP_08280261.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] gi|328939928|gb|EGG36263.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] Length = 539 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 29/188 (15%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPV 150 + Q++ D L+ + N S F+ SY E L+ + FDID+FK+IND +GH + Sbjct: 356 LRQMAYYDGLTRIYNRSHFMKL--SYALLNQAVRNREPLAFLLFDIDHFKRINDVYGHDI 413 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + + + R GGEEFA A G S EA A +R + + Sbjct: 414 GDQALQHIVELTRKTLRAEDLFARYGGEEFAVAMPGHSTSEATAAAERIRAKLLAQPMTT 473 Query: 211 SSGPSIHITISAGIA----------------ERCHKEPISTIIYRADQALYVAKKSGRNR 254 GP + IT S G+A E + ++ +AD++LY AK+SGRN Sbjct: 474 PQGP-LMITASFGVAAVKTSSHNGRVDAEAEEAWWDTELKKVLKQADRSLYEAKRSGRN- 531 Query: 255 VVCFSDIE 262 + SD E Sbjct: 532 TIRVSDEE 539 >gi|308271056|emb|CBX27666.1| hypothetical protein N47_H24880 [uncultured Desulfobacterium sp.] Length = 347 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 11/188 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 + KEL + + +S ID L+ + N F S + LS + DID FK Sbjct: 157 VKKELEKTNKILQDISSIDGLTSIPNRRCFDDFVNREWKSAVRKSTSLSFIMIDIDNFKA 216 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR 200 NDN+GH GD+ + + L P V R GGEEF AA + + A+ +A + Sbjct: 217 YNDNYGHQEGDECLKQIGKVLKEAVKRPQDLVARYGGEEFIAALVDTDPNGASTVAERIC 276 Query: 201 KIIENSQINISSGPSIHI-TISAGIAERC-HKEPIS-TIIYRADQALYVAKKSGRNRVVC 257 ++ I + P+ +I TIS GIA ++E + + I AD+ALY+AKK GRN++ Sbjct: 277 SKVKALNIPHAFSPTANIVTISMGIAGGIPNRESLPGSFITMADKALYLAKKEGRNQIRL 336 Query: 258 FSDIENNT 265 FS+ E N+ Sbjct: 337 FSETEENS 344 >gi|296102343|ref|YP_003612489.1| diguanylate cyclase with GGDEF domain [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056802|gb|ADF61540.1| diguanylate cyclase with GGDEF domain [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 479 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 6/131 (4%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+++ DIDYFK INDN+GH GD+V+A + ++ V G V R+GGEEFA Sbjct: 332 LTVMLLDIDYFKSINDNYGHECGDRVLAGFAREVQQVVGDDGMVARMGGEEFAVVVNTGD 391 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQA 243 Q LA +R I ++++T+S G+ A E + ++ AD Sbjct: 392 AQHGFALAERIRLTIAAHPFTWRQQ-TLYLTVSIGLGSGKAASWQLTEVFNRLMAEADDH 450 Query: 244 LYVAKKSGRNR 254 LY +KK+GRNR Sbjct: 451 LYRSKKAGRNR 461 >gi|258512826|ref|YP_003186260.1| diguanylate cyclase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479552|gb|ACV59871.1| diguanylate cyclase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 402 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 11/176 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 EL++ + ++ D L+GL N +F L N L + DID FKQIND Sbjct: 225 ELWVRQILSEKEAKTDALTGLYNRKSFDEYLDFALQISDGTNTPLHLAVIDIDNFKQIND 284 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH VGD+++ + + F+ R GGEEFA + ++A +R+ I Sbjct: 285 QYGHLVGDEILRRTAQAIQQHLAAGDFLARYGGEEFAVIIPEVTHEQAVQNMEKIREYIA 344 Query: 205 N-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N + + + T+S G++ E + RADQ LY AK++G+N++V + Sbjct: 345 NVHHVELDGNRA---TVSIGLSTHRPGETRDELFERADQCLYRAKQTGKNKIVAWE 397 >gi|217974723|ref|YP_002359474.1| diguanylate cyclase [Shewanella baltica OS223] gi|217499858|gb|ACK48051.1| diguanylate cyclase [Shewanella baltica OS223] Length = 640 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 16/148 (10%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ FD D+FK+INDNFGH +GD+ + ++ + G +GR+GGEEF + Sbjct: 496 SVIIFDADHFKKINDNFGHELGDRALLTIASAGKALTGNKDLIGRIGGEEFLILLPNTDA 555 Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKE-PISTIIYR 239 + A LA+ L+ I S + P+ + +T+SAG+A E +++ ++++ R Sbjct: 556 ERACELAHQLQAHI--SSLGAEHLPTELKLTVSAGVATLAPQPNTENTYQDRDFASLLKR 613 Query: 240 ADQALYVAKKSGRNRVVCFSDIENN-TC 266 AD ALY AK +GRN C +N TC Sbjct: 614 ADDALYEAKNAGRN---CVKAAKNEATC 638 >gi|190573568|ref|YP_001971413.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011490|emb|CAQ45108.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 447 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 9/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L+GL N F+ L + + +++ DID+FK IND GH GD Sbjct: 268 LQDLATRDFLTGLPNRRCFLEQSQRQLPQLQLHGQCVAVAMIDIDHFKHINDTHGHEAGD 327 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + ++ + + + R GGEEF + EA + +LR+ I +++I + Sbjct: 328 DALRAVAGAVATHARSHDLIARFGGEEFCLLVPDMEQDEALLYFEELRQRIAALEVDIGT 387 Query: 213 GPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ +T+S G+ R ++ + +I AD+ LY+AK GRNRV C + Sbjct: 388 A-TLRMTVSIGLCCLRPQRDALHRLISEADRQLYLAKAGGRNRVSCTT 434 >gi|149907506|ref|ZP_01896253.1| GGDEF family protein [Moritella sp. PE36] gi|149809176|gb|EDM69105.1| GGDEF family protein [Moritella sp. PE36] Length = 347 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GLLN F + ++ N SI+ DID FK ND+FGH +GD+V+ ++ Sbjct: 186 DSLTGLLNRRVFSKEIETFCSNPTLNRNFSILMVDIDNFKAFNDDFGHQLGDQVLKAIAK 245 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HI 218 ++ V R GGEEF + A A +R+ IE I + +G I +I Sbjct: 246 RIADSCQEGEQVFRYGGEEFVLILPNKTFTIARQNAESIRRAIERLSIRDKRTGKVIDNI 305 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G++E ++ I+ RAD LY AK+ GRNRV+ Sbjct: 306 TVSIGVSENKPRDTSHEILTRADLQLYEAKRLGRNRVM 343 >gi|154249283|ref|YP_001410108.1| response regulator receiver modulated diguanylate cyclase [Fervidobacterium nodosum Rt17-B1] gi|154153219|gb|ABS60451.1| response regulator receiver modulated diguanylate cyclase [Fervidobacterium nodosum Rt17-B1] Length = 474 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%) Query: 104 SRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S +D L+GL N + +L YN+K + FD+D FK+IND +GH VGD+V+ Sbjct: 295 STVDGLTGLFNKKELLRFLEETHNLSKYNKKPYYVAMFDLDNFKKINDTYGHLVGDEVLK 354 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L L G GR GGEEF + E ++ + + ++ P Sbjct: 355 ILGKILKEAVGDKGIAGRYGGEEFTLILTKIEKDEVVDFIEEILQKVRTAEF-----PHG 409 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G+ + + + ++ AD+ LY+AKKSG++R Sbjct: 410 KCTVSCGVVSSENYQSPTEVLKAADELLYIAKKSGKDRAT 449 >gi|22298593|ref|NP_681840.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294773|dbj|BAC08602.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 558 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 16/169 (9%) Query: 100 ISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ +D L+GL N F++ + L I D+DYFK+IND +GH VGD Sbjct: 376 LKRLAEVDPLTGLSNRRKATEDIERFLTLASRQQQTLCIAVLDLDYFKRINDTYGHDVGD 435 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILANDLRKIIENSQI 208 +V+ + L V R GGEEF A G S + AI LR N Sbjct: 436 QVLVTTARMLRQSLRMEDVVARWGGEEFLIALYGISLEVAKHRLAICLQRLR----NHTF 491 Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + S +T SAGI++ H + + ++ AD ALY AK +GR++++ Sbjct: 492 HAPNHHSFKVTFSAGISQFPTHGQSLVQLVKMADDALYAAKAAGRSQIM 540 >gi|296272209|ref|YP_003654840.1| PAS/PAC sensor-containg diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296096384|gb|ADG92334.1| diguanylate cyclase with PAS/PAC sensor [Arcobacter nitrofigilis DSM 7299] Length = 703 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 13/190 (6%) Query: 83 GYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134 G I G + +++ R+ LS D L+ N F I+ N L+ + Sbjct: 515 GKIKGYTAIRQDITDKKRVEYLSITDELTQTYNRRYFNTKIEEEINRAKRNNYYLAFIML 574 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DID+FK NDN+GH GD+ + +S L+ F RLGGEEF +E+++ Sbjct: 575 DIDFFKLYNDNYGHHKGDETLIKVSQILIKHTARASDFAFRLGGEEFGILFSYKNEEDSL 634 Query: 194 ILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKS 250 + A +RK IE +I + ++ S ++T S G+ + K E I T+ AD+ALY AK+S Sbjct: 635 MYAESIRKEIEALKIEHKANEASPYLTTSLGLVVKKGKELESIDTVYKLADEALYKAKES 694 Query: 251 GRNRVVCFSD 260 G+NR VC S+ Sbjct: 695 GKNR-VCVSN 703 >gi|256032862|pdb|3I5C|A Chain A, Crystal Structure Of A Fusion Protein Containing The Leucine Zipper Of Gcn4 And The Ggdef Domain Of Wspr From Pseudomonas Aeruginosa gi|256032863|pdb|3I5C|B Chain B, Crystal Structure Of A Fusion Protein Containing The Leucine Zipper Of Gcn4 And The Ggdef Domain Of Wspr From Pseudomonas Aeruginosa Length = 206 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 12/169 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L D L+GL N F L +LS++ D+DYFK ND FGH G Sbjct: 25 RLKKLVNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAG 84 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209 D+ + ++ + + R GGEEFA G+S A +LA +R+ +E+ QI + Sbjct: 85 DEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISH 144 Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P H+T+S G++ + +I ADQALY AK +GRN+V Sbjct: 145 DQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 193 >gi|229526792|ref|ZP_04416196.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229336950|gb|EEO01968.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis VL426] Length = 642 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ + DID+FK+IND FGH Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 532 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 637 >gi|121585593|ref|ZP_01675389.1| sensory box/ggdef family protein [Vibrio cholerae 2740-80] gi|153820667|ref|ZP_01973334.1| sensory box/ggdef family protein [Vibrio cholerae B33] gi|254225178|ref|ZP_04918791.1| sensory box/GGDEF family protein [Vibrio cholerae V51] gi|255746536|ref|ZP_05420483.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101] gi|262158874|ref|ZP_06029987.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|121550210|gb|EAX60224.1| sensory box/ggdef family protein [Vibrio cholerae 2740-80] gi|125622277|gb|EAZ50598.1| sensory box/GGDEF family protein [Vibrio cholerae V51] gi|126521710|gb|EAZ78933.1| sensory box/ggdef family protein [Vibrio cholerae B33] gi|255736290|gb|EET91688.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101] gi|262029447|gb|EEY48098.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1] Length = 627 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ + DID+FK+IND FGH Sbjct: 458 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 517 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 518 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 570 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 571 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 622 >gi|315127420|ref|YP_004069423.1| diguanylate cyclase with PAS/PAC sensor [Pseudoalteromonas sp. SM9913] gi|315015934|gb|ADT69272.1| diguanylate cyclase with PAS/PAC sensor [Pseudoalteromonas sp. SM9913] Length = 331 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 11/170 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 YNR+ + D L+GL N A SL Y + L+ + D+D+FK+ ND +GH Sbjct: 158 YNRLKIQASTDHLTGLANRLALDESLKKYWQESIQSQQPLTSILIDVDHFKKFNDTYGHI 217 Query: 150 VGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ- 207 GDK + ++ L+ + R GGEEFA + A I+A +++ I Sbjct: 218 KGDKCLQKIAKMLLHCIPSRECLAARYGGEEFAIILPRCDIKSATIVAKHVQQQINAMTF 277 Query: 208 INISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255 +I P + +++S GIA + + ++Y AD ALY AK GRN++ Sbjct: 278 TDIGLPPEVKVSVSQGIASENNNQYRTYEALLYAADTALYRAKTEGRNKI 327 >gi|313683192|ref|YP_004060930.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313156052|gb|ADR34730.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 452 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 19/196 (9%) Query: 71 LVIISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122 L++I+ ISL+ I S+ EL I+ N L+ D L+ + N A+ IS+ Sbjct: 263 LMLITYLISLVFVIIGTSLHHAELIININ----LTNTDNLTKVKNVKAYKERINELISNF 318 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD--QLVVVFGTPMFVGRLGGEEF 180 Y S++ FDID FK IND GH GD V+ LS Q V +F R+GGEEF Sbjct: 319 ERYKIPFSMMIFDIDDFKMINDTHGHRAGDIVLMELSALVQKNVRHTDTLF--RVGGEEF 376 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 ++ +A +AN ++ ++EN I P+ ITIS GI++ ++ T+ R Sbjct: 377 VILCPNTALHDAIDVANKIKNVVENELTVI---PNQRITISIGISQVKEEDAEDTLYRRV 433 Query: 241 DQALYVAKKSGRNRVV 256 D LY +K++G+N++ Sbjct: 434 DGLLYQSKQNGKNKIT 449 >gi|307304777|ref|ZP_07584527.1| diguanylate cyclase [Shewanella baltica BA175] gi|306912179|gb|EFN42603.1| diguanylate cyclase [Shewanella baltica BA175] Length = 640 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 16/148 (10%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ FD D+FK+INDNFGH +GD+ + ++ + G +GR+GGEEF + Sbjct: 496 SVIIFDADHFKKINDNFGHELGDRALLTIASAGKALTGNKDLIGRIGGEEFLILLPNTDA 555 Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKEP-ISTIIYR 239 + A LA+ L+ I S+ P+ + +T+SAG+A E +++ ++++ R Sbjct: 556 ERACELAHQLQAHI--SRQGAEDLPAELKLTVSAGVATLAPQTNTENTYQDKDFASLLKR 613 Query: 240 ADQALYVAKKSGRNRVVCFSDIENN-TC 266 AD ALY AK +GRN C +N TC Sbjct: 614 ADDALYEAKNAGRN---CVKAAKNEATC 638 >gi|288961995|ref|YP_003452305.1| GGDEF domain-containing protein [Azospirillum sp. B510] gi|288914275|dbj|BAI75761.1| GGDEF domain-containing protein [Azospirillum sp. B510] Length = 262 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 77/158 (48%), Gaps = 8/158 (5%) Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S+ D L+ L N I L G +++ DID+FK++ND FGH GD V+ Sbjct: 101 SQTDPLTDLPNRRQMIERLEAELCRVGRSGGSFALIMVDIDHFKEVNDAFGHAAGDHVLV 160 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + L T R GGEEF + + +A +A LR+++ N+ I G I Sbjct: 161 ETACLLRRNLRTHDLCARWGGEEFLILLPDAKQFQAEAVAEKLRELVANTAIE-HQGHGI 219 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 IT+S G+A I AD ALYVAK++GRNR Sbjct: 220 AITLSLGVAAYQPGGTADACIQAADDALYVAKRNGRNR 257 >gi|295700239|ref|YP_003608132.1| diguanylate cyclase [Burkholderia sp. CCGE1002] gi|295439452|gb|ADG18621.1| diguanylate cyclase [Burkholderia sp. CCGE1002] Length = 399 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 32/185 (17%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 I G +L+E SR D L+ L N F IS + ++++ FD+D Sbjct: 213 IHGELLRE-----------SRTDYLTRLGNRKLFFEQGEQVISEHQMHRRPVALLAFDLD 261 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK+IND +GH GD+V+ ++ + GT + R+GGEEFAA G + A Sbjct: 262 HFKRINDRYGHKTGDEVLRSFAETVRAETGTDAILARIGGEEFAALLPGHDTERA----- 316 Query: 198 DLRKIIEN------SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKS 250 +K+ E + + + G I T+S G+AE + ++ ++ ADQALY AK Sbjct: 317 --KKVGETVASRFAAMSHGADGDRIRATVSIGLAESNRETTSLTDLLSAADQALYRAKSL 374 Query: 251 GRNRV 255 G NR+ Sbjct: 375 GGNRL 379 >gi|24373609|ref|NP_717652.1| GGDEF family protein [Shewanella oneidensis MR-1] gi|24347944|gb|AAN55096.1|AE015647_2 GGDEF family protein [Shewanella oneidensis MR-1] Length = 319 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 10/177 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 G ++ L +S + D L+ L N A+ I + + S++ DID F Sbjct: 139 GQEVQNLKTEMENLSLAAMTDQLTSLHNRRAYEIAIQDHIHRAEEQHTRCSLLLIDIDRF 198 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K ND +GH VGDKV+A+++ L FV R GGEEF + +A +A L Sbjct: 199 KVFNDTYGHQVGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETL 258 Query: 200 RKIIENSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 R I ++ I + IT+S G+A + T+ RAD+ALY AK GRN Sbjct: 259 RGRISERRLAIGKDKKLSLGAITVSIGLASLQKGDDAETLFSRADKALYEAKSDGRN 315 >gi|39937172|ref|NP_949448.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009] gi|39651030|emb|CAE29553.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris CGA009] Length = 297 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 11/156 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + F + Y +L+++ +DID+FK++ND GH GD+V+ LS Sbjct: 130 DPLTGLFNRAKFDLVLRHELIRAERYGTQLALIVYDIDHFKEVNDAHGHQAGDRVLVQLS 189 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + + R GGEEF + A ++A+ L + I + ++ IT Sbjct: 190 EIVSCEIRQTDLLVRWGGEEFVVVLPATDGMTACLVADKLGRAIAQATFDLVG----TIT 245 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+++ + + T++ R D ALY AK +GRNRV Sbjct: 246 CSFGVSDFVIGDSVDTLLARTDNALYRAKMNGRNRV 281 >gi|126172919|ref|YP_001049068.1| diguanylate cyclase [Shewanella baltica OS155] gi|125996124|gb|ABN60199.1| diguanylate cyclase [Shewanella baltica OS155] Length = 369 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 12/134 (8%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ FD D+FK+INDNFGH +GD+ + ++ + G +GR+GGEEF + Sbjct: 225 SVIIFDADHFKKINDNFGHELGDRALLTIASAGKALTGNKDLIGRIGGEEFLILLPNTDA 284 Query: 190 QEAAILANDLRKIIENSQINISSGPS-IHITISAGIA--------ERCHKEP-ISTIIYR 239 + A LA+ L+ I S++ P+ + +T+SAG+A E +++ ++++ R Sbjct: 285 ERADELAHQLQAHI--SRLGAEDLPAELKLTVSAGVATLAPQTNTENTYQDKDFASLLKR 342 Query: 240 ADQALYVAKKSGRN 253 AD ALY AK +GRN Sbjct: 343 ADDALYEAKNAGRN 356 >gi|218248505|ref|YP_002373876.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8801] gi|218168983|gb|ACK67720.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8801] Length = 660 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 19/208 (9%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125 E +SL + S+ L + +L++L + +++ L+ +D L+ + N F L Sbjct: 453 EEMSL-LESVAAQLGIAIAHSHLLEQLKEANEKLAALANLDGLTQVANRRHFDEILAQRW 511 Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGE 178 + LS++ D+DYFK+ ND +GH +GD+ + ++ + P V R GGE Sbjct: 512 KQCAREKQPLSLIMCDVDYFKRYNDFYGHQMGDECLIKVAQTIAKTVQRPGDLVARWGGE 571 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIA---------ERC 228 EFA + +A +R+ +++ I P ++IS GIA E Sbjct: 572 EFAVILPNTDVNGVKYIAQSIREQVQSLAIIHEDSPIKNQVSISLGIATIIPPAKTLENN 631 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256 H+ I +I +ADQALY AK+ GR+R+ Sbjct: 632 HESLIKALIAQADQALYQAKEQGRDRIA 659 >gi|165932901|ref|YP_001649690.1| response regulator PleD [Rickettsia rickettsii str. Iowa] gi|165907988|gb|ABY72284.1| GGDEF family protein [Rickettsia rickettsii str. Iowa] Length = 450 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F I + KL ++ DID FK +ND +GH GDKV+ +S Sbjct: 291 DGLTGLFNRRYFDIHLKQIIEKTNKESIKLCLLMCDIDNFKHVNDTYGHQAGDKVLTIVS 350 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218 L + R GGEEF +A A +R IE +I + Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMNFHIEDQIEPLKT 410 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TIS G+ + +E I + I RAD+A+Y AK +G+N+VV Sbjct: 411 TISIGVTKYKKEESIESFIERADKAMYEAKTTGKNKVV 448 >gi|330503632|ref|YP_004380501.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328917918|gb|AEB58749.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 406 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 7/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + L+ D L+ LLN + +L + ++ DID+FK IND GH VGD Sbjct: 234 DELRSLAAHDPLTRLLNRRGLMDALEAQFRLRAASPAYLLIVDIDHFKNINDTHGHKVGD 293 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 V+ ++D L + RLGGEEF AL + E A LA +R IE S + S Sbjct: 294 LVLCHVADVLTSTARQGDLICRLGGEEFVVVALETDEAGARQLAERIRAAIELSAVPASG 353 Query: 212 SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 +I T + G+A+ + + + AD ALY K +GRNRV Sbjct: 354 EKQAIRCTATIGVADVFNAAQAFDLALQHADAALYRGKTAGRNRV 398 >gi|289663084|ref|ZP_06484665.1| putative sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1011 Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 8/174 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +L L I + + + D L+GL N F IS L + DID+FK+ Sbjct: 836 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 895 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND++ H GD V+ + L RLGGEEFA ++ +EA L +R Sbjct: 896 INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLEEAQALCLRIRA 955 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +++ + S + +T SAG+AE + S+++ RAD ALY AK +GR+R+ Sbjct: 956 LF-HARHDWGSVEGLQVTFSAGVAELRDDDTGSSLMQRADHALYEAKSAGRDRI 1008 >gi|315187397|gb|EFU21153.1| diguanylate cyclase [Spirochaeta thermophila DSM 6578] Length = 298 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 10/194 (5%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 ++L ++I + LL+ +I EL R+ +LS D L+GL N F L Sbjct: 104 VALTGVTIGVMLLIRMYRMTI-SELSEKQRRLIELSITDDLTGLYNARYFYRRLEEEIAR 162 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 Y LS++F D+D FK+ ND +GH GD+V+ ++ L R GGEEF Sbjct: 163 SRRYGRPLSLLFIDLDDFKRFNDTYGHLAGDRVLRKVARVLRESLRENDSAYRYGGEEFV 222 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 + +E + A +R+ IE + + + +T S G+ E + I + RAD Sbjct: 223 IILPETGAEEGRVAAERVRRRIE--ECSFRGEEKVKVTASVGVVEYREGDAIEDFVRRAD 280 Query: 242 QALYVAKKSGRNRV 255 QA+Y AK G+NRV Sbjct: 281 QAMYRAKAEGKNRV 294 >gi|307319822|ref|ZP_07599246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sinorhizobium meliloti AK83] gi|306894553|gb|EFN25315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sinorhizobium meliloti AK83] Length = 530 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 24/182 (13%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+ L N S+F L +++ L+++ D+D FK +ND FGH GD Sbjct: 100 IEHLAHHDALTDLSNRSSFDRRLRQALAAAVHHDDALAVLCLDLDRFKAVNDIFGHGEGD 159 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKI----IENSQ 207 +++ ++D L G + RLGG+EFA G+++ EAA +LA+ + K+ ++ + Sbjct: 160 RILRKVADILRAAAGEADTIARLGGDEFAIVQTGAAQPEAARLLADRILKLFSEEMDTRR 219 Query: 208 INISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 ++ G SI + I G AER + AD ALY AK++G+ + CF D E + Sbjct: 220 DPMAVGVSIGVAICPGDGTTAERLYGN--------ADTALYRAKQTGKG-IACFFDAEMD 270 Query: 265 TC 266 Sbjct: 271 AA 272 >gi|292489502|ref|YP_003532390.1| hypothetical protein EAMY_3035 [Erwinia amylovora CFBP1430] gi|292898286|ref|YP_003537655.1| signal transduction protein [Erwinia amylovora ATCC 49946] gi|291198134|emb|CBJ45239.1| putative signal transduction protein [Erwinia amylovora ATCC 49946] gi|291554937|emb|CBA22905.1| Uncharacterized protein yhcK [Erwinia amylovora CFBP1430] gi|312173678|emb|CBX81932.1| Uncharacterized protein yhcK [Erwinia amylovora ATCC BAA-2158] Length = 365 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 7/181 (3%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141 + ++++L+ LS +D L+GL N + L ++L+ ++ DID+FK Sbjct: 173 TRRLVRQLYEEKETYCDLSMLDPLTGLYNRRGLKNRLADIADQLTGNHYVLLLDIDHFKA 232 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 NDN+GH +GD+ + +S + + V R GGEEF +E A A +R+ Sbjct: 233 YNDNYGHAMGDQALTRVSVAIRDAVRSRDIVTRYGGEEFLVLLTNVNESIAIKQAERIRE 292 Query: 202 IIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +I + + +TIS G+A + + AD+ALY+AK GRNRV Sbjct: 293 FVLGLEIPHRFNDKVATQVTISVGVAPLI-ADDFDKALAHADRALYLAKSRGRNRVTHLQ 351 Query: 260 D 260 D Sbjct: 352 D 352 >gi|78060881|ref|YP_370789.1| diguanylate cyclase [Burkholderia sp. 383] gi|77968766|gb|ABB10145.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383] Length = 527 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 15/207 (7%) Query: 68 NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 + ++ I S ++L +G++ S+L ++ + + L+R D L+GL N +L Sbjct: 310 DRAIPIGSAMVALAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 369 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174 + LS++F D+DYFK+ ND GH GD +A + + P + R Sbjct: 370 AREWRRAARSQHALSLLFIDVDYFKRYNDTQGHQAGDDALAAVGHCIAGCLRRPADYAAR 429 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEP 232 GGEEF A +A +R I + I +G S +T+S G+ H + Sbjct: 430 YGGEEFLVVLPDVDTTGAVAIAETIRTGILDLGIRHDAGTSGRLTVSIGVTTSYPEHDDD 489 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFS 259 + + AD ALY AK+ GRNR+V + Sbjct: 490 MQGALKLADDALYRAKEGGRNRIVVHA 516 >gi|307308958|ref|ZP_07588641.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Sinorhizobium meliloti BL225C] gi|306900592|gb|EFN31205.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Sinorhizobium meliloti BL225C] Length = 770 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 24/182 (13%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+ L N S+F L +++ L+++ D+D FK +ND FGH GD Sbjct: 337 IEHLAHHDALTDLSNRSSFDRRLRQALAAAVHHDDALAVLCLDLDRFKAVNDIFGHGEGD 396 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKI----IENSQ 207 +++ ++D L G + RLGG+EFA G+++ EAA +LA+ + K+ ++ + Sbjct: 397 RILRKVADILRAGAGEADTIARLGGDEFAIVQTGAAQPEAARLLADRILKLFSEEMDTRR 456 Query: 208 INISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 ++ G SI + I G AER + AD ALY AK++G+ + CF D E + Sbjct: 457 DPMAVGVSIGVAICPGDGTTAERLYGN--------ADTALYRAKQTGKG-IACFFDAEMD 507 Query: 265 TC 266 Sbjct: 508 AA 509 >gi|294828214|ref|NP_713112.2| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] gi|293386064|gb|AAN50130.2| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] Length = 306 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 31/204 (15%) Query: 84 YISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAFISSLGS----- 124 Y++G + E + +ISQL+ D L+ L N AF + L S Sbjct: 107 YVTGRDITETIEANRQISQLATELKEANDLLFEQATTDPLTKLKNRRAFTNDLHSLLRFM 166 Query: 125 YNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 EK LS++ D+D+FK ND FGH GDKV+ L+ L + +GR GGEEF A Sbjct: 167 QQEKSFLSLLMIDVDHFKTYNDQFGHLAGDKVLVCLAKVLENTLRSNDLLGRFGGEEFVA 226 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHKEPIST-II 237 A + E+++ + L + S ITIS GI+ E+ + ST +I Sbjct: 227 ALPNTCEKKSIEIGERLVNAVREFNWEYRS-----ITISVGISTSDFEKKQLDVDSTNLI 281 Query: 238 YRADQALYVAKKSGRNRVVCFSDI 261 +AD+ALY +K +GRN+ S I Sbjct: 282 EKADKALYQSKVNGRNKATHSSQI 305 >gi|284042297|ref|YP_003392637.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] gi|283946518|gb|ADB49262.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] Length = 994 Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 9/173 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++ D L+GLLN +F I + Y + + + DID FK IND GH VG Sbjct: 560 QLQHMADHDPLTGLLNRRSFERELNQHIHRVERYGAEGAALVLDIDRFKHINDTLGHNVG 619 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D++I ++ L + RLGG+EFA +QEA +A + + + + Sbjct: 620 DELIVKVAQTLRSRLRDSDVLARLGGDEFAVLLPKGGQQEAEAVAESILASVRAQSVLTT 679 Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIE 262 +G IT S GIA +S ++ AD A+Y AK++GR+R FS E Sbjct: 680 AGRRRPITTSVGIALFGETGGLSAEDVLVNADLAMYDAKEAGRDRAATFSSQE 732 >gi|134099828|ref|YP_001105489.1| diguanylate cyclase [Saccharopolyspora erythraea NRRL 2338] gi|133912451|emb|CAM02564.1| diguanylate cyclase (GGDEF domain) [Saccharopolyspora erythraea NRRL 2338] Length = 696 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 10/171 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL F + L L++ DID+FK IND +GHPVGD+V Sbjct: 322 RLAVTDVLTGLCTRRYFEAHLPQAMARCERAGRPLAVFIIDIDHFKSINDRYGHPVGDRV 381 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + +L + R GGEEFA AL +A LR + + +S+ Sbjct: 382 LVETATRLRRAVREGDVLARYGGEEFALLALDVDRAAVTGMAERLRAAVGGMPVELSTAD 441 Query: 215 SIHITIS--AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +T+S A + + P +I AD+ALY AK GR+RV ++E+ Sbjct: 442 RAWVTVSVGAAGGDGVGRSP-QQLIADADRALYAAKAMGRDRVALGDELEH 491 >gi|154248965|ref|YP_001409790.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1] gi|154152901|gb|ABS60133.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1] Length = 1320 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 20/171 (11%) Query: 104 SRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S +D L+ L F L Y N+K L+IV DID FK+IND +GH GDKV+ Sbjct: 1148 SYVDPLTKLFTRYYFAELLSQYFENAVNQKDSLAIVMCDIDNFKKINDTYGHLTGDKVLK 1207 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L T VGR GGEEF A + +E ++ LR++I++ Q P Sbjct: 1208 TIAKILRDNVRTTDIVGRFGGEEFIMAFPSTDSEEVVLILERLRRLIKDVQ----EFP-F 1262 Query: 217 HITISAGIAERCH-------KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T+S G+ K P +I AD ALY AK +G++++V +S+ Sbjct: 1263 KLTLSFGVVSYPQDTENIIIKAP-EDLIRLADTALYHAKNTGKDKIVVYSE 1312 >gi|260221718|emb|CBA30562.1| hypothetical protein Csp_C24170 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 519 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 16/178 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 L +L +R+S +R D L+G LN IS++ LS+ DID FK++ Sbjct: 345 LAKLHKELDRVSLQARHDALTGALNRKGLDEALNREISTMRRNESVLSVALLDIDNFKKL 404 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILAND 198 ND GH GD + L+ + R GGEEF L + L + Sbjct: 405 NDTLGHATGDVALTHLAAVAKECMRPQDTLARYGGEEFVILLPDTPLDKGIEAMTRLQRE 464 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 L K + ++ + IT SAG+A+ +E + I RADQA+Y+AK++G+NRV+ Sbjct: 465 LTK-----RFFLAGTEKVLITFSAGVAQVLAEEEPADAIRRADQAMYLAKRAGKNRVL 517 >gi|163751215|ref|ZP_02158443.1| GGDEF family protein [Shewanella benthica KT99] gi|161328929|gb|EDQ00003.1| GGDEF family protein [Shewanella benthica KT99] Length = 334 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 12/159 (7%) Query: 107 DCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G+ N AF + SL + L ++ DID+FK NDN+GH +GD+V+ ++ +L Sbjct: 175 DALTGIFNRRAFDNDLRGSLSQSPDGLCLILVDIDHFKTFNDNYGHQLGDQVLKAVAKRL 234 Query: 163 VVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKI-IENSQINISSGPSIH 217 + + R GGEEFA + L SS A + L KI +++ + N+ Sbjct: 235 LEACRNGAKIYRYGGEEFAVIIPKSQLSSSRHLAESMRRGLEKISLKDRRKNVRIN---K 291 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IT S G+A+ + +I +AD+ LY AK+ GRNRV+ Sbjct: 292 ITASFGVAQWHKNLEGAELIEKADKLLYEAKRLGRNRVM 330 >gi|163792352|ref|ZP_02186329.1| hypothetical protein BAL199_15933 [alpha proteobacterium BAL199] gi|159182057|gb|EDP66566.1| hypothetical protein BAL199_15933 [alpha proteobacterium BAL199] Length = 403 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 11/171 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + I L+R D L+GL N F I+ LS++ D DYFK++ND Sbjct: 226 ELRRARQDIETLARTDSLTGLWNRRHFEDMIEVEIARSQDEGSPLSLLAIDADYFKRVND 285 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH GD V+ L+D L + R GGEEF + EAA LA +R + Sbjct: 286 RFGHHTGDAVLRELTDLLGQQIRERDVLCRWGGEEFIILLPATDRDEAAALAGTIRNAVA 345 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G+ E + R D ALY AK++GRN+V Sbjct: 346 GYGFTAIE----TMTVSIGVGLILADETAEDWLRRVDSALYDAKQNGRNQV 392 >gi|116253214|ref|YP_769052.1| GGDEF/EAL transmembrane sensory box protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257862|emb|CAK08960.1| putative GGDEF/EAL transmembrane sensory box protein [Rhizobium leguminosarum bv. viciae 3841] Length = 783 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 14/178 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL S +R + + D L+GLLN F I++ + ++L+ +F D+D FK IND Sbjct: 336 ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGQELACLFVDLDRFKWIND 395 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203 N GH GD + L ++L RLGG+EFA +E A ++ + I Sbjct: 396 NMGHAAGDMALVELVERLKTHLAPSDEAARLGGDEFAILLPAKDAENRAKVMCEQIASIF 455 Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + P +H++ S GIA H E + ++ ++D A+Y K+ G+N F + Sbjct: 456 DTPFT-----PDMHLSASVGIAIYPHHAETAAELLQKSDMAMYAKKRDGKNGAQLFDN 508 >gi|45657015|ref|YP_001101.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600252|gb|AAS69738.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 319 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 90/186 (48%), Gaps = 21/186 (11%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEK---LSIVFFDIDYFKQIND 144 EL + +++ + + D L+ L N F L N+K LS++ D+D+FK ND Sbjct: 137 ELKDANDKLFEQASTDPLTKLKNRRTFNEELKDLIVHTNKKRGFLSLLMIDVDHFKTYND 196 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGHP GD+V+ L+ L + R GGEEF A + E +A +A+ L I+ Sbjct: 197 QFGHPAGDQVLIRLASVLTYALRVSDLLARFGGEEFVVALPETGEYKAIEVADRLVVTIQ 256 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---------IIYRADQALYVAKKSGRNRV 255 + + ITIS GIA P+ST I+ AD+ALY +K +GRN+ Sbjct: 257 K-----ETWENRPITISVGIATLDFSLPVSTFRDTDFSTRIVEEADRALYRSKANGRNQA 311 Query: 256 VCFSDI 261 S I Sbjct: 312 THCSQI 317 >gi|330965674|gb|EGH65934.1| GGDEF domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 677 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 8/157 (5%) Query: 106 IDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+GL N +A+ L EK S++ D+D+FK+IND +GH GDKV+ + Sbjct: 519 IDPLTGLPNRAAWGERLEQEMADWQREKNSLLVCILDLDHFKRINDGYGHLAGDKVLKIV 578 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + F+ R GGEEF + L ++LR +E + G + I Sbjct: 579 AHVFKKRLRPADFLARFGGEEFVMLLPATPSGTGLTLLDELRTAVELCPFHFK-GERVTI 637 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+ E T I RADQALY AK +GRNRV Sbjct: 638 TVSIGVTALRTGERSDTAIKRADQALYKAKANGRNRV 674 >gi|212635867|ref|YP_002312392.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212557351|gb|ACJ29805.1| GGDEF domain protein [Shewanella piezotolerans WP3] Length = 321 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G LN AF I L N + L ++ DID+FK ND +GH +GD+V+ ++ +L Sbjct: 163 DALTGALNRRAFNKDIKGLVEQNPQGLCLIITDIDHFKLFNDTYGHQLGDQVLKAVARRL 222 Query: 163 VVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + R GGEEFA + LG + Q A + L K++ + ++ Sbjct: 223 GESCHEGSKLYRFGGEEFALLVPKSQLGRARQLAESMRRSLEKLVLKDKRKDQRVDNVRA 282 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G+A+ K+ ST+I RAD+ LY AK+ GRNRV+ Sbjct: 283 SF--GVAQYQDKDSDSTLIERADKQLYEAKRLGRNRVM 318 >gi|195953696|ref|YP_002121986.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp. Y04AAS1] gi|195933308|gb|ACG58008.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobaculum sp. Y04AAS1] Length = 441 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 8/158 (5%) Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+ N A + + + S++ FDID FK+IND +GH GD ++ Sbjct: 273 LSETDELTKAYNRRFFDEILDALVDAYKNKTAPFSLIIFDIDDFKKINDTYGHDAGDLIL 332 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S+ + R+GGEEFA A +++ LRKI+E + + Sbjct: 333 KRISELVKANIRQEDIFCRIGGEEFAIILKQIDIFGAYVVSEKLRKIVETTNFTYKD-KT 391 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I TIS G+AE + T+ +AD+ALYV+K SG+N Sbjct: 392 IKTTISLGVAEFGKNDTKETLFKKADRALYVSKTSGKN 429 >gi|148258088|ref|YP_001242673.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gi|146410261|gb|ABQ38767.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] Length = 777 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RIS L+R D L+ L N +F + E +++F D+D FKQ+ND GHP G Sbjct: 332 RISHLARYDELTTLPNRVSFRDEIERLLRIPPRQGELSALLFVDLDRFKQVNDTLGHPCG 391 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQIN 209 D+++ +S++L + FV R GG+EF S +AA+LA R+I++ S+ Sbjct: 392 DQLLCAVSERLRDMLRPEDFVARFGGDEFVVFQRNIRSNDDAAVLA---RRIVDQLSERY 448 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I S GIA T++ AD ALY AK GR F D Sbjct: 449 KIDNHLVEIGASVGIAMTAPGISADTLLKNADMALYRAKAEGRGTFCFFRD 499 >gi|312197162|ref|YP_004017223.1| phytochrome sensor protein [Frankia sp. EuI1c] gi|311228498|gb|ADP81353.1| putative phytochrome sensor protein [Frankia sp. EuI1c] Length = 1637 Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 11/175 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++L + +R+ QLS D L+GL N L SY L++ DID+FK N Sbjct: 1449 EQLAAANHRLEQLSATDPLTGLANRRQLNEFLNDAWYRAASYGTPLALAMIDIDHFKAYN 1508 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH VGD + ++ L R GGEEF G+ A +A+ LR + Sbjct: 1509 DFFGHTVGDLCLRRVAACLARCTRDTDLAARYGGEEFVVVMPGADSVTATQIAHRLRTAV 1568 Query: 204 EN-SQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255 E+ ++ + + I +T+S GIA ++ ++ ++ AD ALY+AK GRNRV Sbjct: 1569 EDLAEPHPRTDERI-VTVSIGIATTTPGPRDDVAALLEVADAALYLAKNGGRNRV 1622 >gi|269140102|ref|YP_003296803.1| hypothetical protein ETAE_2759 [Edwardsiella tarda EIB202] gi|267985763|gb|ACY85592.1| hypothetical protein ETAE_2759 [Edwardsiella tarda EIB202] gi|304559938|gb|ADM42602.1| hypothetical protein ETAF_2500 [Edwardsiella tarda FL6-60] Length = 489 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 19/183 (10%) Query: 89 ILKELFISYNRISQLSR-------IDCLSGLLNHSAFISS----LGSYNEKLSIVFFDID 137 +L+ L ++ QL++ ID L+G+ N +F+ L +++ FD+D Sbjct: 300 VLQALAAQREQLEQLNQALTLQASIDYLTGIRNRRSFVQHFAPLLQHARSLVALALFDLD 359 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILA 196 YFK ND +GH GD+ + + S+++ F P +GR GGEEF AL S++ + IL Sbjct: 360 YFKHYNDTYGHQAGDEALIYFSNEMRRHFKEPDSLIGRFGGEEF--IALCSADGQCNILE 417 Query: 197 NDLRKIIENSQINISSGPSIHITISAG---IAERC-HKEPISTIIYRADQALYVAKKSGR 252 L K+ E+ H+T+S G + C + ++ AD+ LY AK +GR Sbjct: 418 R-LDKLRESLDYGSDEALPGHLTVSIGCVLVPRECVTPQSFDALVRYADEMLYQAKNTGR 476 Query: 253 NRV 255 NR+ Sbjct: 477 NRL 479 >gi|289828471|ref|ZP_06546329.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 365 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 25/203 (12%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 LSL +I + LL ++S +L R+ +S D ++G+ N + L + Sbjct: 169 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYNRRHWEILLRNEFD 227 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ + +++ DID+FK IND +GH GD+ I L+ QL + +GR GG+EF Sbjct: 228 HSRRHHREATLLIIDIDHFKSINDTWGHDAGDEAIIALTRQLQITLRGSDIIGRFGGDEF 287 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII-- 237 A G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 288 AVIMCGTPA-DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGH 338 Query: 238 YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 339 YREWLKSADMALYKAKNAGRNRT 361 >gi|24113329|ref|NP_707839.1| hypothetical protein SF2000 [Shigella flexneri 2a str. 301] gi|110805923|ref|YP_689443.1| hypothetical protein SFV_1998 [Shigella flexneri 5 str. 8401] gi|24052340|gb|AAN43546.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|110615471|gb|ABF04138.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|313650178|gb|EFS14591.1| cellulose synthesis regulatory protein [Shigella flexneri 2a str. 2457T] gi|332757308|gb|EGJ87645.1| cellulose synthesis regulatory protein [Shigella flexneri 2747-71] gi|332757522|gb|EGJ87857.1| cellulose synthesis regulatory protein [Shigella flexneri K-671] gi|332766694|gb|EGJ96898.1| diguanylate cyclase domain protein [Shigella flexneri 2930-71] gi|333003334|gb|EGK22880.1| cellulose synthesis regulatory protein [Shigella flexneri K-218] gi|333017542|gb|EGK36854.1| cellulose synthesis regulatory protein [Shigella flexneri K-304] Length = 494 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ LL Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 301 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 360 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ Sbjct: 361 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 420 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 421 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 480 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 481 KQAGRNRV 488 >gi|73541438|ref|YP_295958.1| PAS:GGDEF [Ralstonia eutropha JMP134] gi|72118851|gb|AAZ61114.1| PAS:GGDEF [Ralstonia eutropha JMP134] Length = 476 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 113/238 (47%), Gaps = 21/238 (8%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90 + + + F A+ ++ L Y P GL + + + +I L G+I+ Sbjct: 245 LAAYRASFDASAAQLSPWHLEYRVQLPMQGLRWRQGDARPQRLPDGSI-LWHGFITDVTE 303 Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQI 142 ++ + + +L+ ID L+GL N F++ + + L +++ D+D+FK I Sbjct: 304 RKRIEA--ELQELATIDSLTGLPNRRHFMAQIETRLASLQSGRGAATALMMCDLDHFKSI 361 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH VGD+V+ L GRLGGEEF G+ + A +A +++ Sbjct: 362 NDRWGHGVGDRVLRHFGSILRAHLRPGDMAGRLGGEEFGILLDGADMRGAVGVARQIQQR 421 Query: 203 IENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I + I I +T+S GI A+ + P+S R+D ALY AKKSGRNR+ Sbjct: 422 IAEYPL-IEHEQRIDLTVSIGIALMTAADANAEAPLS----RSDLALYRAKKSGRNRI 474 >gi|148265917|ref|YP_001232623.1| diguanylate cyclase [Geobacter uraniireducens Rf4] gi|146399417|gb|ABQ28050.1| diguanylate cyclase [Geobacter uraniireducens Rf4] Length = 380 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 12/174 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV-----FFDIDYFKQINDNFGHP 149 + Y+++ +L+ D L+GL N F LG E+ ++ D+D FKQ+ND FGH Sbjct: 177 LEYSKVKELAMRDSLTGLFNRRVFDEMLGLEGERQKLMPLSLLLIDLDDFKQVNDTFGHS 236 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+A L V R GGEEFA + +A +A LR + Sbjct: 237 AGDQVLATFGRILRESCRGADLVARYGGEEFAVVLPTTPSSKAFEIAQRLRIRFAATAFA 296 Query: 210 ISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259 G +T S GIA C + P+S ++ RAD ALY AKK G+NR+ +S Sbjct: 297 F-EGRHFKLTASIGIA--CTFDTSSVPVSDLVQRADNALYRAKKEGKNRISVYS 347 >gi|23014416|ref|ZP_00054233.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 317 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 81/171 (47%), Gaps = 11/171 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH----SAFISSLGS---YNEKLSIVFFDIDYFKQIND 144 EL + + ++S D L+GL N AF L Y E +S++ D+D+FK IND Sbjct: 149 ELALKSVALEKVSITDALTGLFNRRRLDEAFAHELDRAQRYAEPVSLIISDVDHFKSIND 208 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+V+ ++D L VGR GGEEF + + A LA LR I Sbjct: 209 VHGHQTGDEVLQSIADLLRNGVRALDVVGRWGGEEFLIICPNTDLEGAVALAEKLRLTIA 268 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + T S G+A+ E + RAD ALY AK GRNRV Sbjct: 269 TAVFTGTGA----CTASFGVAQYAESESFKDTVARADTALYRAKVEGRNRV 315 >gi|330873727|gb|EGH07876.1| response regulator, putative/diguanylate cyclase [Pseudomonas syringae pv. glycinea str. race 4] Length = 387 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 215 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 274 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + Q A + +++R ++I+ + P+ + Sbjct: 275 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDLFC 332 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRN+V Sbjct: 333 TFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 369 >gi|326794109|ref|YP_004311929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas mediterranea MMB-1] gi|326544873|gb|ADZ90093.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas mediterranea MMB-1] Length = 718 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 17/174 (9%) Query: 96 SYNRISQLSRIDCLSGLLNHSA----FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + ++ L++ D L+ L N ++ F + ++++++F D+D FK +ND GH +G Sbjct: 279 TQQQVEWLAKHDSLTQLPNRASLFDFFQKCIDHGTDRMALLFVDLDRFKNVNDTLGHRIG 338 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI------IEN 205 D+++ ++ +++ V R GG+EF +SE +A +A DLR +E Sbjct: 339 DQLLVAVAKRMLSTIAEGSCVVRQGGDEFIILLPNTSESDAQKVATDLRMALSKRFQLEQ 398 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 Q+ I+ PSI I++ + T+ RAD A+Y AK+SGRNR F+ Sbjct: 399 HQLIIT--PSIGISLYPKDGRD-----LDTLYKRADTAMYRAKQSGRNRFAMFT 445 >gi|307822562|ref|ZP_07652793.1| diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307736166|gb|EFO07012.1| diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 448 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 15/173 (8%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+ L N F + + YN LS + DID+FK+IND F H GD Sbjct: 275 LKELSIRDELTQLYNRRYFNEQAIKLFAQMKRYNHSLSFMIGDIDHFKRINDRFSHATGD 334 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---SQIN 209 +V+ +S L V R GGEEF + +AA LRK+IE S I+ Sbjct: 335 EVLKAVSGILKNSTRASDIVARYGGEEFVVIFPETPLMQAAAQCERLRKLIEGFPWSTIH 394 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 P + +T+S G+++ E I+ AD LY AK GRNR +C + +E Sbjct: 395 ----PDLQVTMSMGLSDDLSLERFEHILAAADNNLYRAKADGRNR-LCSAALE 442 >gi|304312539|ref|YP_003812137.1| hypothetical protein HDN1F_29110 [gamma proteobacterium HdN1] gi|301798272|emb|CBL46494.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length = 382 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 15/187 (8%) Query: 83 GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFD 135 GYI + F+ +S L++ D L+G+ N A L ++ E++ S++ D Sbjct: 194 GYIIEFNSRRSFLQRGMMSALAQTDALTGIYNRGAINHKLERIFNYAHREQIAVSLLLAD 253 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI 194 IDYFK+ ND +GH GD+ I ++ P+ F GR GGEEF L +S EAA Sbjct: 254 IDYFKRYNDLYGHLEGDRCIQAVASAFAASCRRPLDFAGRYGGEEFVLVWLNTSATEAAS 313 Query: 195 LANDLRKIIENSQI-NISSGPSIHITISAGIAE----RCHKEPISTIIYRADQALYVAKK 249 L + + + I + I + S S +TIS G+ + H + + AD LY AK Sbjct: 314 LRDGVEQRIRSLHITHKGSDVSSEVTISGGLVTGYPGKSHTP--ADFLKAADDGLYKAKA 371 Query: 250 SGRNRVV 256 +GRN++V Sbjct: 372 AGRNQIV 378 >gi|289627374|ref|ZP_06460328.1| response regulator, putative/diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647851|ref|ZP_06479194.1| response regulator, putative/diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330867160|gb|EGH01869.1| response regulator, putative/diguanylate cyclase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871048|gb|EGH05757.1| response regulator, putative/diguanylate cyclase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 551 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + Q A + +++R ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDLFC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRN+V Sbjct: 497 TFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 533 >gi|254411539|ref|ZP_05025316.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182040|gb|EDX77027.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 505 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 14/203 (6%) Query: 78 ISLLLGYISGSILKE--LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------ 129 I+ LG + I E LF + ++ L ID L+G+ N F + ++L Sbjct: 299 IAAQLGTLMQRIKVETALFEANQKLKYLVTIDGLTGIANRRKFDQYIHREWQRLFREQLP 358 Query: 130 -SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 S++ DID+FK+ ND +GH GD + ++ ++ ++ P V R GGEEFA + Sbjct: 359 LSLILGDIDFFKRYNDTYGHQAGDDCLRNVATKIRLLVKRPADLVARYGGEEFAVILPNT 418 Query: 188 SEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQAL 244 + + A +A +R+ +E +I + S S ++T+S G++ ++ +I +ADQAL Sbjct: 419 NAKGAIHVAETIRQGVETLKIPHGGSESSKYVTLSLGVSSLIPNSLVNVEGLINQADQAL 478 Query: 245 YVAKKSGRNRVVC-FSDIENNTC 266 Y AK GRN+ V +S EN+ C Sbjct: 479 YRAKAGGRNQTVAEYSIPENSYC 501 >gi|113970628|ref|YP_734421.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113885312|gb|ABI39364.1| diguanylate cyclase [Shewanella sp. MR-4] Length = 467 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 4/156 (2%) Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGLLN F+ L + N + S+ D+D FK IND +GH VGD+VI L+ + Sbjct: 312 DPLSGLLNRRGFMPQLTNLNGPTARYSVAMLDLDNFKMINDTYGHSVGDRVIQLLAQLIH 371 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + RLGGEEFA ++ + +RK I + +I+ T+S G Sbjct: 372 NHSRSQDIAARLGGEEFALVLRDIDAEQVYPVLERIRKSFAEMSIA-AEEHTIYCTVSIG 430 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 E ++++ AD+ALY AK G+N +V + Sbjct: 431 WVEYQQGIAGESLLHLADKALYQAKAQGKNTIVKYQ 466 >gi|332524913|ref|ZP_08401099.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2] gi|332108208|gb|EGJ09432.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2] Length = 480 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 14/164 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GLLN AF L E++ ++ D+D+FK++ND GH VGD+++ ++ Sbjct: 108 DTLTGLLNRRAFGQRLRKALEEMLPGEVRGLLRLDLDHFKRLNDECGHAVGDQLLRSAAE 167 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SSGPSIH 217 L +GR+GG+EF L + + L ND R ++ I S+G S+ Sbjct: 168 SLAAGSSPEDAIGRVGGDEF---VLLLTRYDLQTLLNDARALLRRLSAPIEVPSTGHSLV 224 Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T SAG+ R H + ++ +AD A+Y AK +GR+R++CF + Sbjct: 225 LTASAGLTVLRPHLSEVE-VMRQADAAMYEAKGAGRDRLMCFEN 267 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 16/162 (9%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI---A 156 D L+G N F L L++ DID F IN +G P GD V+ A Sbjct: 317 DALTGTHNRRYFDERLAREVTQAQRSGRPLALALLDIDNFHGINAGYGWPSGDIVLREFA 376 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ V + ++ R GGEEF + + A + +R + + + G SI Sbjct: 377 ALAGGNVRLVD---WLARYGGEEFCIVLPDTPVEAALAVMERIRVAVAAATFVATDGRSI 433 Query: 217 HITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A ++ P++ +I RA +A AK +G+NRVV Sbjct: 434 GVTVSIGLAMLSAEDGAPVA-LIDRAGRACLSAKAAGKNRVV 474 >gi|298486489|ref|ZP_07004549.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158966|gb|EFI00027.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 636 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 29/214 (13%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115 +G +L ++ + ++ T LL+ + + +L + ++ L+ D L+GL N Sbjct: 152 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 208 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L Sbjct: 209 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 268 Query: 172 VGRLGGEEFAAAALG------SSEQEAAILANDLRKIIENSQI----NISSGPSIHITI- 220 V RLGG+EF G Q+ +LA++LR+++ + PSI I + Sbjct: 269 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 328 Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G+A + ++ RAD ALY AK SGRN Sbjct: 329 PDDGLAP-------ADLLKRADIALYRAKDSGRN 355 >gi|123440952|ref|YP_001004941.1| hypothetical protein YE0586 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087913|emb|CAL10701.1| putative exported protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 407 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 11/171 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144 K L + ++ + D L+GL N + F L NE ++++F D D FK+IND Sbjct: 212 KHLTQENDSLAHRAAHDSLTGLANRAYFEGRLSRTLSDCKTNEHVAVLFLDGDRFKEIND 271 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKI 202 N+GH GD V+ ++D+L + V RLGG+EFA A + +++ + I+AN++ K Sbjct: 272 NYGHAAGDVVLTTIADRLRALLRESDLVARLGGDEFAILLAPIYNTD-DVLIIANNIIKS 330 Query: 203 IENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252 + I + G I ++S G+A H + ++ RAD+A+Y AKK R Sbjct: 331 M-TQPITLPDGSEIISSLSIGVAIYPDHAQTPDELLQRADEAMYQAKKGFR 380 >gi|152994238|ref|YP_001339073.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150835162|gb|ABR69138.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 356 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 82/161 (50%), Gaps = 19/161 (11%) Query: 106 IDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ +LN N + +I+ DID+FKQ+ND GH GDKV++ + Sbjct: 199 VDLLTRVLNRRGIEKVFNELNLDSTEQKKNYAILIIDIDHFKQVNDIHGHLTGDKVLSSI 258 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217 + +L +GR GGEEF L + ++ LA +LR + N I NIS+ Sbjct: 259 AGKLSRTVHPNDVLGRWGGEEFIVLTLNRTPKQVMALAENLRTAVSNLIIGNISN----- 313 Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IT+S GI E KE + I AD LY+AK+SGRN + Sbjct: 314 ITVSIGIGYSYEASSKEAVFKI---ADSHLYIAKQSGRNTI 351 >gi|51245833|ref|YP_065717.1| methyl-accepting chemotaxis protein [Desulfotalea psychrophila LSv54] gi|50876870|emb|CAG36710.1| related to methyl-accepting chemotaxis protein [Desulfotalea psychrophila LSv54] Length = 387 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 30/226 (13%) Query: 32 SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK 91 ++F+++F A+ IFI F+ +I T F + Y L + L I +L IL Sbjct: 188 NVFWTVFKASGIFIT-CFILFIAATTFM-VNYFLRQLGELAIKDTLTNLYTKRFLEEILP 245 Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + +R +Q L ++F DID+FK++ND++GH G Sbjct: 246 NVLKKLHRDNQ------------------------HLLVVIFIDIDHFKKVNDSYGHSCG 281 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ L++ L+ F R GGEEF +EQEA + +RK E + + Sbjct: 282 DLVLKRLANILMDNTRPDDFSIRFGGEEFLLIGFFRNEQEAIAVTERIRK--ETACLVFE 339 Query: 212 SGPS-IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S IT+SAGIA + E + RAD+ LY AK SGRNR+ Sbjct: 340 DNNSKFQITLSAGIAIYQPDTESFEGTLKRADKKLYEAKDSGRNRI 385 >gi|238788547|ref|ZP_04632340.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641] gi|238723460|gb|EEQ15107.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641] Length = 378 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 3/154 (1%) Query: 106 IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 ID L+ L N ++ + ++ + + ++ D+D+FK +ND +GH GD ++ + L Sbjct: 202 IDKLTQLNNRASVDYRLKAIHNRRQACGLMILDLDHFKSVNDTYGHNGGDVLLTAVGKLL 261 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + FVGR GGEEF Q ++A +R+ +E+ + + G I +TIS Sbjct: 262 MTTVRDEDFVGRYGGEEFIIITHRHEPQAIKVVAERIRQRVEDLTVEVPDGRKIKVTISI 321 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + + + D+ALY AK GRN+VV Sbjct: 322 GASLYLPGMSMLKALKMTDEALYQAKNQGRNQVV 355 >gi|313111572|ref|ZP_07797371.1| putative GGDEF domain-containing protein [Pseudomonas aeruginosa 39016] gi|310883873|gb|EFQ42467.1| putative GGDEF domain-containing protein [Pseudomonas aeruginosa 39016] Length = 671 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + D L+GL N +A L + L + DID+FK+IND+FGH GDKV Sbjct: 509 QKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKV 568 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ +L F+ R GGEEF +S + L LR I + P Sbjct: 569 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEP 628 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT SAGI E + RADQALY AK++GR+R+ Sbjct: 629 -LSITCSAGITAFEGNEAGEVVFERADQALYRAKRAGRDRL 668 >gi|300822275|ref|ZP_07102416.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7] gi|300525158|gb|EFK46227.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7] Length = 436 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 243 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 302 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 303 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 362 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 363 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 422 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 423 KQAGRNRV 430 >gi|284043916|ref|YP_003394256.1| diguanylate cyclase [Conexibacter woesei DSM 14684] gi|283948137|gb|ADB50881.1| diguanylate cyclase [Conexibacter woesei DSM 14684] Length = 351 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 94/218 (43%), Gaps = 21/218 (9%) Query: 48 IFLFYIGLT--PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105 I L IG P G + + LS ++ + + LL ++ L +++ + +L Sbjct: 134 IPLVAIGAPEYPPTGWRSVPLLVLSCALVGVAVQELLAR-ERAVAGRLQLAHAELERLVE 192 Query: 106 IDCLSGLLN-------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+GL N H I+ L++ D+D FK ND GHP GD ++ + Sbjct: 193 TDPLTGLPNRRAIETTHRREIAVALRTGRPLTLAIIDLDRFKAYNDAHGHPAGDALLRTV 252 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 SD+ + R GGEEF G A L +LR + ++Q Sbjct: 253 SDEWSRRLRASDVLTRWGGEEFLLLLPGCDADAADSLVEELRAAVPHAQ----------- 301 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T SAG+A +I RAD ALY AK+ GR+R V Sbjct: 302 TFSAGVAPWQPGMTGDQLIARADAALYRAKREGRDRTV 339 >gi|188582502|ref|YP_001925947.1| diguanylate cyclase [Methylobacterium populi BJ001] gi|179346000|gb|ACB81412.1| diguanylate cyclase [Methylobacterium populi BJ001] Length = 360 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 88/188 (46%), Gaps = 26/188 (13%) Query: 91 KELFISYNRISQLSR----------IDCLSGLLNHSAF--------ISSLGSYNEKLSIV 132 ++L +S I +L R D L+GL N AF + ++ Sbjct: 167 EQLSVSAGHIDRLHRDLVEAQRAAVTDTLTGLANRKAFDQFLRDAITRTRADSGSTFCLI 226 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSS 188 DID+FK +ND GH GD+V+ L+ L R GGEEFA A +G+ Sbjct: 227 MLDIDHFKGLNDRHGHRFGDQVLRLLARLLSEKTTDRDLAARYGGEEFAIVLGEAGIGAG 286 Query: 189 EQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVA 247 A ++ + LR + SG + +TISAG+A+ E +I RAD+ALY A Sbjct: 287 VALAQLVCDRLRG---QRLVKRGSGEVVAQVTISAGVAQYRPGEAARDVIERADRALYEA 343 Query: 248 KKSGRNRV 255 K++GR+RV Sbjct: 344 KRTGRDRV 351 >gi|109898091|ref|YP_661346.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109700372|gb|ABG40292.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 362 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 24/170 (14%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+ + + A + + + K +V DIDYFK+ ND +GH VGD+V+ ++ +L V Sbjct: 185 DELTSIPSRRALMQYVNTLGRKYVVVMADIDYFKKFNDTYGHDVGDEVLRLVASRLNKVG 244 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---------------- 210 G R GGEEF S Q+A +R++I + I + Sbjct: 245 GGGK-AFRFGGEEFILIFPRKSPQQALPFVEQIRQMIADYPIALRDKPRPKKRPKAAAGK 303 Query: 211 ------SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 S G ++ IT S G+A+R + S I+ +AD ALY AKK+GRN Sbjct: 304 GSTSKNSQGKTVKITASFGVAKRSSQFSQFSDIMKQADIALYAAKKAGRN 353 >gi|94501116|ref|ZP_01307639.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Oceanobacter sp. RED65] gi|94426692|gb|EAT11677.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Oceanobacter sp. RED65] Length = 308 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 21/175 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 N++ ++ ID L+ L N + F+ L Y KL++ D+D FKQ+ND GH Sbjct: 130 NKLQNMALIDPLTLLSNRADFMQKLEHHLEYSLRYQTKLALCMVDLDGFKQVNDTLGHRA 189 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA--NDLRKIIE---- 204 GD+V+ S +L + RLGG+EF LG ++E+++ A ++ + E Sbjct: 190 GDQVLQQFSTRLKQRLRKSDVLARLGGDEFVILMLGVGDEESSMQAAKEKMQAVAEPFLI 249 Query: 205 --NSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + Q+ +I G SI I IS G K +++ ADQA+Y KKSG+N + Sbjct: 250 YMDGQVHDIQLGMSIGICISGGTISTPDK-----LLHCADQAMYQVKKSGKNNIA 299 >gi|330811572|ref|YP_004356034.1| diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379680|gb|AEA71030.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 498 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 12/167 (7%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +QL+ +D L+GL N +L + LS++ D D+FK ND GH GD+ Sbjct: 332 AQLASVDSLTGLANRRTLDETLQQEWLRAQRSGQPLSVLMIDADHFKAFNDRHGHQRGDE 391 Query: 154 VIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + L+ + P R GGEEF+ ++ A +A ++R+ +E + ++ Sbjct: 392 ALRTLAQLISKHVRRPADLAARYGGEEFSVVLPETTTAGAFTMAQNIREAVEQ-LLPVAE 450 Query: 213 GPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257 G + +T+S GIA + + +++ AD+ALY AK SGRNRVVC Sbjct: 451 GEA-PMTVSIGIATWVNGPYGELQQLLFAADKALYQAKSSGRNRVVC 496 >gi|288561713|ref|YP_003429119.1| diguanylate cyclase [Bacillus pseudofirmus OF4] gi|288548345|gb|ADC52227.1| diguanylate cyclase [Bacillus pseudofirmus OF4] Length = 334 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 14/160 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 I++ S ID L+ L N F L + E +S++F DID FK +ND GH GD+V+ Sbjct: 186 ITKSSVIDPLTKLYNRRYFNQQLDKMAVKEPVSMIFMDIDDFKALNDTKGHEEGDRVLKE 245 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++D + VGR GGEE AA ++E LA +R+ IE Sbjct: 246 VADITKNIVQAHGIVGRYGGEEIVAAVKEDRQEE---LAERIRQTIEEKT---------G 293 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +T+S G++ + ++ AD+ +Y AK +G+N+VV Sbjct: 294 VTVSIGVSSLREGMSVRDLVVSADENMYQAKTTGKNKVVS 333 >gi|120613350|ref|YP_973028.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gi|120591814|gb|ABM35254.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 428 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 17/217 (7%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYIS---------GSILKELFISYNRISQLS 104 G P+ +E L N +++ +L G++ G L++L ++ + + Sbjct: 123 GKLPYRTIETSL--NDGRWVLTTETTLPGGWMLCVVTDVSELGIELRDLRQERDKAMKSA 180 Query: 105 RIDCLSGLLNHSAFI----SSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + LG + +++ DID+FK +ND FGH GD V+ + Sbjct: 181 LSDELTGLSNRRYAMDFLQQKLGPNKAQAMAVAVIDIDHFKAVNDRFGHAGGDLVLRDFA 240 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L G V R+GGEEF G+ A + L ++ + + P + Sbjct: 241 ARLAETAGRDDVVARIGGEEFLLVLQGARTVGADSVLRQLGDSLDTASP-LPEAPEFRYS 299 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SAG+A E + ++ RAD+ALY AK++GRNRVV Sbjct: 300 CSAGVALARPGETVGEVLRRADEALYQAKRAGRNRVV 336 >gi|326795863|ref|YP_004313683.1| diguanylate cyclase with extracellular sensor [Marinomonas mediterranea MMB-1] gi|326546627|gb|ADZ91847.1| diguanylate cyclase with extracellular sensor [Marinomonas mediterranea MMB-1] Length = 734 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 79/174 (45%), Gaps = 17/174 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 E+ + + L D L+GL N + Y L ++ DID+FK +ND Sbjct: 551 EMHAAKQELELLVSQDYLTGLFNRKKLDELMARECIESKHYGRPLGVIMIDIDHFKDVND 610 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH VGD VI ++ L VGR GGEEF + E A +R + Sbjct: 611 TYGHSVGDDVIGCIARLLKQHARPSDKVGRWGGEEFMVLCPNTPPDELIAFAEMIRAQVS 670 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTII---YRADQALYVAKKSGRNRV 255 + I I TIS G+A EP T++ RAD ALYVAK +GRNRV Sbjct: 671 SYDITIVGTK----TISLGLAVL---EPFETVVELHKRADNALYVAKNNGRNRV 717 >gi|83648383|ref|YP_436818.1| response regulator [Hahella chejuensis KCTC 2396] gi|83636426|gb|ABC32393.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 553 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 9/164 (5%) Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LSR D L+GLLNH S +S L+ V D+D+FK++ND +GH +GD+V+ Sbjct: 387 LSR-DGLTGLLNHISAEEYLSQQLSRARRMGSSLAYVMVDLDHFKRVNDQYGHLMGDRVL 445 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + L +GR GGEEF ++++ A + +R N P Sbjct: 446 VNFARYLQGRLRRSDVIGRYGGEEFVVILPDTTKEHARFVIESMRMSFATINHNTEEDP- 504 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +T SAGIA + ++ + AD ALY AK+ GRN+V ++ Sbjct: 505 LQVTFSAGIAAFPDIDDMTMLSKAADDALYDAKQQGRNKVCIYN 548 >gi|74317971|ref|YP_315711.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259] gi|74057466|gb|AAZ97906.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus denitrificans ATCC 25259] Length = 454 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 12/166 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ +++ D L+G+ N + F L + S++ FDID FKQIND +GH Sbjct: 279 RLERMATTDALTGIANRARFEELLQLEQQHCLRVPGQPFSVILFDIDRFKQINDTWGHGQ 338 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ ++ + T + R GGEEFA + A ++A+ + + Q+ + Sbjct: 339 GDDVLKTIAREVQGLLRTADTLARWGGEEFAVLLPRTDLDAARVVADKICGAL--GQVPL 396 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +T S G+A EP + ++ RAD ALY AK+ GRN+VV Sbjct: 397 ERVGT--VTASFGVATIESGEPGAALLARADGALYEAKRRGRNQVV 440 >gi|114561940|ref|YP_749453.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114333233|gb|ABI70615.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 404 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 73/149 (48%), Gaps = 8/149 (5%) Query: 112 LLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 L NH +S +S+ DID+FKQINDN GH +GDKV+ L+ L Sbjct: 260 LTNHQTTQDLLSKQAVTQYPISVAIIDIDHFKQINDNHGHLIGDKVLCQLAQLLQNQMRN 319 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 + R GGEEF ++ +A L LR I I + +TIS G+A+ Sbjct: 320 DDLLARWGGEEFVVVLPNTTLADAIELTERLRLYIAMQNIK-----GMELTISLGVAQYR 374 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ +++ RAD+ALY AK GRN V Sbjct: 375 LEDSAHSLLDRADKALYSAKSGGRNCVAA 403 >gi|296392352|ref|ZP_06881827.1| GGDEF domain-containing protein [Pseudomonas aeruginosa PAb1] Length = 671 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + D L+GL N +A L + L + DID+FK+IND+FGH GDKV Sbjct: 509 QKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKV 568 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ +L F+ R GGEEF +S + L LR I + P Sbjct: 569 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEP 628 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT SAGI E + RADQALY AK++GR+R+ Sbjct: 629 -LSITCSAGITAFEGNEAGEVVFERADQALYRAKRAGRDRL 668 >gi|257483365|ref|ZP_05637406.1| response regulator, putative/diguanylate cyclase, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012580|gb|EGH92636.1| response regulator, putative/diguanylate cyclase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 551 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + Q A + +++R ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDLFC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRN+V Sbjct: 497 TFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 533 >gi|240142683|ref|YP_002967196.1| putative GGDEF family protein [Methylobacterium extorquens AM1] gi|240012630|gb|ACS43855.1| putative GGDEF family protein [Methylobacterium extorquens AM1] Length = 359 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 3/176 (1%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLSIVFFDIDYFKQINDNFGH 148 ++EL + + +D L+GLLN + L + +++ DID+FK IND FGH Sbjct: 179 MEELRREIEALRTETTLDVLTGLLNRRGLDARLNAMAGSPYTLLMLDIDHFKGINDRFGH 238 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ- 207 P GD VI + + V R+GGEEFA + E A I+A +R + + Sbjct: 239 PAGDSVIRSVGAVIRHCVRDDDVVARMGGEEFAVILPATGEDAAEIVAARIRANVAARRF 298 Query: 208 INISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +G I +T+S G A E +++ RADQALY +K+ GR+RV F+ E Sbjct: 299 VKRQTGEPIGVVTVSVGGASSGSGEGGESVLERADQALYASKRGGRDRVTFFNRKE 354 >gi|85716223|ref|ZP_01047197.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A] gi|85696895|gb|EAQ34779.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A] Length = 457 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 11/166 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+GL N S L + E+ L+++ DIDYFK IND++GH GD V Sbjct: 290 EMAVTDGLTGLHNRRYMESHLATLAEQASLRGKPLALMMLDIDYFKSINDSYGHDAGDDV 349 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213 + + ++ R GGEEF + A +A LR+ I ++ G Sbjct: 350 LREFALRIRKAIRGIDLACRYGGEEFVVVMPETDLHVAGRVAERLRRAIAGETFSVHKGT 409 Query: 214 PSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +TIS G++ ER E +S + RAD ALY AK GRNRVV Sbjct: 410 KRLKVTISIGLSILER-KGESVSDALKRADVALYRAKHDGRNRVVA 454 >gi|330447645|ref|ZP_08311293.1| putative diguanylate cyclase YcdT domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491836|dbj|GAA05790.1| putative diguanylate cyclase YcdT domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 408 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 75/202 (37%), Positives = 100/202 (49%), Gaps = 19/202 (9%) Query: 57 PFYGLEYILVENLSLVI-ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115 P Y L YI V SL+I IT++L L Y S + L R+ +++ C Sbjct: 222 PIY-LNYIDVIKFSLLISFLITVTLFLLYRLSSNVMNLI----RLDNMTK--CFRRDYGE 274 Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 + F + L S S+ FDID+FK IND +GH VGD+VI ++ + + R Sbjct: 275 NKFKNKLIS---NKSVFIFDIDHFKNINDTYGHDVGDQVICTTAEIIKRNIRKSAQLYRW 331 Query: 176 GGEEFAAAALGSSEQEAAIL-ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 GGEEF L SE +AA+ A LRK IE + I+ TIS G H + Sbjct: 332 GGEEF-VLILNISEPDAALRKAEQLRKAIE-----AQTELDINFTISIGCT-LAHNMTLD 384 Query: 235 TIIYRADQALYVAKKSGRNRVV 256 I ADQALY AK +GRN+VV Sbjct: 385 ESIKVADQALYTAKNNGRNQVV 406 >gi|313632651|gb|EFR99632.1| ggdef domain-containing protein [Listeria seeligeri FSL N1-067] Length = 375 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 114/235 (48%), Gaps = 21/235 (8%) Query: 35 FSIFIATVI--FIANIFLF---YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89 FS FIA +I F A ++ F + G G E +VE L L S LL+ Y I Sbjct: 140 FSKFIALLILSFPAQLYYFINNFDGGHILQGFE--IVEYLFL---SFATGLLVFYACNYI 194 Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQI 142 K + +++ + D L+ L N F S +K LS+ DID+FK+I Sbjct: 195 DKSNLV-IQTLTETAMTDSLTNLPNMRFFTQQFAWIFNKSLKKKAPLSLFIIDIDHFKEI 253 Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND GH G+ V+A S L F R+GGEEFA +AA++A+ +R+ Sbjct: 254 NDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVDATQAALIADHIRE 313 Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IE ++ + S +TIS G+A C ++ ADQALY AK+SGRN++ Sbjct: 314 EIERAKFPYTP-TSGQVTISIGVATANCSFSTTESLFEAADQALYQAKQSGRNQI 367 >gi|289626963|ref|ZP_06459917.1| sensory box protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650793|ref|ZP_06482136.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 721 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 29/214 (13%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115 +G +L ++ + ++ T LL+ + + +L + ++ L+ D L+GL N Sbjct: 237 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 293 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L Sbjct: 294 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 353 Query: 172 VGRLGGEEFAAAALG------SSEQEAAILANDLRKIIENSQI----NISSGPSIHITI- 220 V RLGG+EF G Q+ +LA++LR+++ + PSI I + Sbjct: 354 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 413 Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G+A + ++ RAD ALY AK SGRN Sbjct: 414 PDDGLAP-------ADLLKRADIALYRAKDSGRN 440 >gi|261409979|ref|YP_003246220.1| PAS/PAC sensor-containing diguanylate cyclase [Paenibacillus sp. Y412MC10] gi|261286442|gb|ACX68413.1| diguanylate cyclase with PAS/PAC sensor [Paenibacillus sp. Y412MC10] Length = 331 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 12/167 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N F L YN LS+ DID+FK++ND +GH GD+V Sbjct: 163 ELSNTDKLTGLKNRRFFQERLEEQLMQYNHNRIPLSLFIIDIDHFKRVNDTWGHGYGDEV 222 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L V R GGEEF + ++A A LR+ +++ S Sbjct: 223 LFDVATILKTHALEGETVARYGGEEFVMILPETDAEKAKAGAERLRRAVQDFSWKTGS-- 280 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +TIS GI + +T++ +AD+ALY +K++GRN+V + D+ Sbjct: 281 ---MTISIGIITANPDDNEATLLQKADEALYASKQNGRNQVTHYDDL 324 >gi|239996173|ref|ZP_04716697.1| hypothetical FOG: GGDEF domain protein [Alteromonas macleodii ATCC 27126] Length = 320 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 87/186 (46%), Gaps = 23/186 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-----------------GSYNEKLSIVF 133 +EL +Y + ++S D L+GL N S L G + L + Sbjct: 87 QELERAYKTLEEVSLRDPLTGLYNRHYLESQLPGEIRRSQFSAKQSPSTGKTKQDLLCLL 146 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DID+FK+IND++GH GDKV++ ++ L VF + R GGEEF S+ +E Sbjct: 147 IDIDHFKRINDDYGHIAGDKVLSAFANVLKEVFRQTDLIIRWGGEEFLVVCRQSTREELP 206 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRA----DQALYVA 247 +A R+++ N+ +I I+IT S G + +E T R D ALY Sbjct: 207 EVAERCREMVANTPFDIGLEKPINITCSIGFSLLPPDREEDFDTAWKRTFAVIDYALYAT 266 Query: 248 KKSGRN 253 K SGRN Sbjct: 267 KLSGRN 272 >gi|289208548|ref|YP_003460614.1| response regulator receiver modulated diguanylate cyclase [Thioalkalivibrio sp. K90mix] gi|288944179|gb|ADC71878.1| response regulator receiver modulated diguanylate cyclase [Thioalkalivibrio sp. K90mix] Length = 436 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 20/190 (10%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQ 141 +++E+ + + +++ +D L+GL N +A F S+++ L+++ D+D+FK Sbjct: 250 LMEEVRLQRQKHYEMAMVDPLTGLSNRNALTEFASRFFDEPCSHDQPLALILMDLDHFKD 309 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND GH VGD+V+A + L V R GGEE GS +A A DLR+ Sbjct: 310 INDRHGHLVGDEVLAAIGQLLRAVAAPGEIPVRFGGEELLMLMPGSDLFDAHTRAEDLRQ 369 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRVV 256 +++ ++ + P +T S G+ R EP ++ + AD+A+Y AK GRN VV Sbjct: 370 RVQD--LHPAGLP---LTASFGVTSR---EPGSDAELNDLFRAADEAVYNAKAQGRNCVV 421 Query: 257 CFSDIENNTC 266 +N+ Sbjct: 422 SLPGKHHNSA 431 >gi|170690285|ref|ZP_02881452.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis C4D1M] gi|170144720|gb|EDT12881.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia graminis C4D1M] Length = 522 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 11/173 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQ 141 + E S ++ L+R D L+GL N + S + ++++ D+D FKQ Sbjct: 328 VTERRQSEAKVLYLARHDSLTGLANRRELRECLDRILLRSHTRRETRTAVLYLDLDGFKQ 387 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND GH GD+V+ ++ +L F RLGG+EF A + +AI+A R Sbjct: 388 VNDRHGHTAGDEVLETVAARLRQTLRHGEFAARLGGDEF--AVIVEEATLSAIVAIAQRV 445 Query: 202 IIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I E ++ +++G +I + S GIA EP+ ++I RAD+A+Y AK +G+ Sbjct: 446 IREIAKPYALTAGGTISLGTSIGIALAEPHEPVDSLIRRADEAMYSAKNAGKG 498 >gi|119470705|ref|ZP_01613373.1| GGDEF family protein [Alteromonadales bacterium TW-7] gi|119446175|gb|EAW27453.1| GGDEF family protein [Alteromonadales bacterium TW-7] Length = 524 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 88 SILKELFISYNRISQL---SRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQ 141 ++L + I +I QL ++ D L+ N + +S L +I+ DID+FK+ Sbjct: 351 AMLNGVNILQTQIGQLKHDAQTDPLTNTHNRRSLNGLLSQLMLKQTPFAILEIDIDFFKR 410 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND FGH GD+ + L+D + + V R+GGEEF Q A +A LR Sbjct: 411 VNDTFGHDKGDEALKVLADIIKKISRKGDIVSRIGGEEFLLVLPHEDSQSALKIAERLRT 470 Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +E +Q+ IT+S GIA H I + AD+ALY AK+ GRNR V Sbjct: 471 TVETTQMETIG----FITVSIGIATWPTHSNNIDQVYKCADKALYYAKEHGRNRCVV 523 >gi|83721143|ref|YP_443336.1| GGDEF domain-containing protein [Burkholderia thailandensis E264] gi|83654968|gb|ABC39031.1| GGDEF domain protein [Burkholderia thailandensis E264] Length = 628 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 22/234 (9%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL------LGYISGSILK 91 ++A IF A F+ +G+ L+ S + L+ + G+ L+ Sbjct: 402 WLAHAIFAAGFFMLS------FGVVQALITTRSFATVYSQQDLMARLAESMARTEGA-LQ 454 Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 EL + ++ L+ D L+G N FI + + S++ D+D FK IND Sbjct: 455 ELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTIND 514 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH VGD V+ Q + + R+GGEEF A+ +A +R I Sbjct: 515 NYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLADTASGIAERVRTTIA 574 Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 575 NASFGI-DGTHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVA 627 >gi|26990419|ref|NP_745844.1| sensory box protein [Pseudomonas putida KT2440] gi|24985387|gb|AAN69308.1|AE016568_3 sensory box protein [Pseudomonas putida KT2440] Length = 503 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 14/181 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIND 144 E ++ +I ++ D L+GL N + F L GS N KL+ D+D FK IND Sbjct: 264 EELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSENAKLTAALCLDLDNFKNIND 323 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH GDK++ L +L + RLGG+EFA G ++AA N +++I+ Sbjct: 324 SLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGLEGRDAAC--NTAQRLIK 381 Query: 205 --NSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + I ++ ++I IA H + + Y AD ALY AK++GRNR CF D+ Sbjct: 382 AISPPFRIEGHQFAVGVSIGIAIAPDDHDQAEQLLGY-ADMALYQAKRNGRNRYECF-DV 439 Query: 262 E 262 E Sbjct: 440 E 440 >gi|311103802|ref|YP_003976655.1| diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310758491|gb|ADP13940.1| diguanylate cyclase, GGDEF domain protein 1 [Achromobacter xylosoxidans A8] Length = 265 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 10/162 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKV 154 + S D L+GLLN A + + ++S + D+D+FK +ND +GH GD+ Sbjct: 99 ETSNRDALTGLLNRRALMEMIKQEVLRVSRGGSTFVVAMLDVDHFKSVNDRYGHETGDRA 158 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L+ L GR GGEEF L S++ EAA D R + + I+ G Sbjct: 159 LVELAGALCNNLREYDLCGRWGGEEFLVL-LPSTQPEAAQRVMD-RLVGAVRALAITVGD 216 Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+A E S + RADQALY+AK+ GR+RV Sbjct: 217 GVLGLTVSIGMAYHQLGETFSETLSRADQALYLAKQDGRDRV 258 >gi|189426005|ref|YP_001953182.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] gi|189422264|gb|ACD96662.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] Length = 308 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 15/179 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144 EL + +++LS +D L+G+ N A +L GS + K LS++ DID+FK ND Sbjct: 126 ELKRQRDLLARLSHLDGLTGIPNRRALDEALEREWRRGSRSLKPLSLLMIDIDHFKAYND 185 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 + GH GD + ++ L G FVGR GGEEF A + A ++A ++ + + Sbjct: 186 SCGHLAGDDCLRTVAQTLKQSLGRAADFVGRYGGEEFLAVLPETDADGAQVVAREVIEEM 245 Query: 204 ENSQINISSGP-----SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + P +I I I+ +A+R H P+ ++ AD ALY AK+ GRNR+V Sbjct: 246 AKLAIPHPASPQGEKVTISIGIATAVAKREHL-PV-FLLQEADSALYRAKQEGRNRIVA 302 >gi|71280896|ref|YP_270210.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71146636|gb|AAZ27109.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 536 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 12/159 (7%) Query: 107 DCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N +AF S+ ++ K L++V DID FK+IND +GH GDK + ++ Sbjct: 378 DALTKLANRAAFDDFFAKSMIRFHRKSFPLALVVIDIDDFKKINDTYGHTAGDKTLQVIA 437 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA--NDLRKIIENSQINISSGPSIH 217 + +V +FVGR GGEEF + S QE A+ A N L + + + Sbjct: 438 NSIVKNVSKGVFVGRYGGEEF--VLIYSKIQEEALTAELNALNNFVARLPFKFKTN-KVS 494 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IT+S G + I RADQA+Y AKK G+N+V+ Sbjct: 495 ITLSIGATHIKPDDNIHIAFERADQAMYKAKKQGKNQVI 533 >gi|85711920|ref|ZP_01042975.1| Signaling protein with a acyltransferase and GGDEF domains [Idiomarina baltica OS145] gi|85694317|gb|EAQ32260.1| Signaling protein with a acyltransferase and GGDEF domains [Idiomarina baltica OS145] Length = 594 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 11/180 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQI 142 L+EL + N + Q + D L+GL N F + N++ + ++ DID FK + Sbjct: 413 LRELQEANNELEQRNLEDPLTGLHNRRYFTQQIEREYRRSRRNQRPMCLLMIDIDKFKAV 472 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH VGD ++ +S +L P V R GGEEFA + Q + A L K Sbjct: 473 NDTYGHGVGDDILQAVSTELRKQARRPTDAVCRYGGEEFAFILAETDLQNGLVFAERLVK 532 Query: 202 IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I + G ITISAG+A + + + AD ALY AK+ GR++VV S Sbjct: 533 HIRQCVFSTRDGEH-SITISAGVAAIDNTRDHSVHDLFTAADSALYKAKREGRDQVVTTS 591 >gi|91978607|ref|YP_571266.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91685063|gb|ABE41365.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB5] Length = 777 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 85/171 (49%), Gaps = 15/171 (8%) Query: 99 RISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLS-IVFFDIDYFKQINDNFGHP 149 RI L+R D L+GL N F +S G LS ++F D+D FKQ+ND GHP Sbjct: 331 RIIHLARYDELTGLPNRVNFHDEIERILTASQGQNKAALSALLFIDLDQFKQVNDTLGHP 390 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQ 207 GD+++ ++D+L + FV R GG+EF S ++AA+LA R+I++ S Sbjct: 391 CGDRLLCAVADRLRDMLRPEDFVARFGGDEFVVFQQNIRSNEDAAVLA---RRIVDRLSD 447 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + I S GIA ++ AD ALY AK GR CF Sbjct: 448 RYLIDHHVVEIGASIGIALTAPATRADILLKNADMALYRAKADGRG-TYCF 497 >gi|332756112|gb|EGJ86465.1| cellulose synthesis regulatory protein [Shigella flexneri 4343-70] Length = 475 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ LL Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 282 TMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 341 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ Sbjct: 342 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANL 401 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVA 247 +AA +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+A Sbjct: 402 TQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLA 461 Query: 248 KKSGRNRV 255 K++GRNRV Sbjct: 462 KQAGRNRV 469 >gi|293604454|ref|ZP_06686861.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553] gi|292817331|gb|EFF76405.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553] Length = 488 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 15/206 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISS 121 E + +I+ +T++L ++ +L + + R + + ++ D L+G+ N F Sbjct: 282 ERRAALIVPVTLALFFSVMAQIVLFRREMRWRRAFEQQLQERAQTDGLTGIANRRTFDEV 341 Query: 122 LGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVG 173 L +S++F D DYFK+ ND +GH GD+++ L+ L P Sbjct: 342 LEREWAVARRDGTPISLLFLDADYFKRYNDRYGHQEGDELLKMLALALKKKARRPRDLAA 401 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKE 231 R GGEEF G+ +++A +A +R+ I + +T+S G+A + Sbjct: 402 RYGGEEFVVLLPGTDKRQAVAIAETIRRAIAELAVPHEDNEGGIVTVSIGVATAVPTGTD 461 Query: 232 PISTIIYRADQALYVAKKSGRNRVVC 257 +S ++ AD A+Y AKK+GRNRV Sbjct: 462 TLSRLVEAADAAVYQAKKAGRNRVAA 487 >gi|224367473|ref|YP_002601636.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223690189|gb|ACN13472.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 600 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 14/186 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 +EL I N++++LS D L+GL N F LG+ + L+++ D+D+FK+ N Sbjct: 411 QELAIVNNKLAELSVTDFLTGLANRRHFDEVLGTEWARAVRTFQPLTLIMIDVDHFKKFN 470 Query: 144 DNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D++GH GD+ + ++ LV + FV R GGEEF+ + G+ A LA LR+ Sbjct: 471 DSYGHQAGDECLKKVASALVTNLCRAGDFVARYGGEEFSIISAGTDLAGARELAEKLRRA 530 Query: 203 IEN----SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ ++ ++ +I I I I +R K+ S ++ AD+ALY AK GRNR+ F Sbjct: 531 VQAMALMNEDSLFGIITISIGIGVCIPDR--KQSASDLVCIADKALYEAKTRGRNRIEDF 588 Query: 259 SDIENN 264 + + Sbjct: 589 GEPQKK 594 >gi|154174291|ref|YP_001409180.1| signaling protein [Campylobacter curvus 525.92] gi|153793073|gb|EAU00843.2| signaling protein [Campylobacter curvus 525.92] Length = 351 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 99/196 (50%), Gaps = 8/196 (4%) Query: 68 NLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125 NLS+V + ++ S LL + I + R+ + D L+GLLN ++ + L Sbjct: 149 NLSMVSVFAVMTSYLLEISNSFIFLNILEQKERVKTMVNHDPLTGLLNRASMQNILQQEA 208 Query: 126 ---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + ++V DID FK+IND +GH GD V+ LS+ F +V R GGEEF Sbjct: 209 LFEGKDFAVVMCDIDDFKKINDTYGHSAGDAVLKSLSEIFKNTFRNDDYVARWGGEEFLV 268 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRA 240 + + A + N +++++ N I G I+ T++ G+ + K I +I +A Sbjct: 269 VIRNAKKFGAISVVNRVKELL-NENIVEFEGTRINATMTFGVVTHDGASKFDIEKMIKKA 327 Query: 241 DQALYVAKKSGRNRVV 256 D+ LY K+SG+N V+ Sbjct: 328 DELLYDGKRSGKNIVM 343 >gi|91205788|ref|YP_538143.1| response regulator PleD [Rickettsia bellii RML369-C] gi|91069332|gb|ABE05054.1| Regulatory components of sensory transduction system [Rickettsia bellii RML369-C] Length = 457 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 79/163 (48%), Gaps = 10/163 (6%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N F + KL ++ DID FK +ND +GH GDKV+ Sbjct: 294 LAAKDGLTGLFNRRYFDVHIKQIVEKANKEGMKLYLLMCDIDNFKHVNDTYGHQAGDKVL 353 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSG 213 S L F + R GGEEF + +A A +R IE N QI+ Sbjct: 354 ITTSRILKNTFRVTDLIARFGGEEFTILLNDINIDQAIYTAERVRVKIESMNFQIDEQEK 413 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P + T+S G+ E E I I R+D+A+Y AK +G+N+VV Sbjct: 414 P-LKKTVSIGVTEYKKCESIEEFIERSDKAMYEAKTTGKNKVV 455 >gi|298488973|ref|ZP_07006996.1| Probable two-component response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156471|gb|EFH97568.1| Probable two-component response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 551 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + Q A + +++R ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDLFC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRN+V Sbjct: 497 TFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 533 >gi|294626587|ref|ZP_06705185.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599154|gb|EFF43293.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 324 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 15/196 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119 + +S +++++ ++L +GY +++ + + +L+ +D L+GL N I Sbjct: 133 QGVSTIVVTL-VTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTHQI 188 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ S++ D+D+FK++ND +GH GD ++ L+ L P V R GGEE Sbjct: 189 DQRQPHDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVREPHQVFRFGGEE 248 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F S E LRK+I N GP IT+S G A + R Sbjct: 249 FVVLLRAGSLAELEAATERLRKVIRNGL----RGPGGRITVSLGAARHDGETHWQDWFSR 304 Query: 240 ADQALYVAKKSGRNRV 255 AD ALY+AK GR+ V Sbjct: 305 ADAALYLAKNGGRDSV 320 >gi|74317013|ref|YP_314753.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans ATCC 25259] gi|74056508|gb|AAZ96948.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Thiobacillus denitrificans ATCC 25259] Length = 762 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+G N A+ ++ L + + FD D FK IND +GH GD+V+ Sbjct: 324 ARQDALTGCHNRRAYEEDWETFRRDLKNAPQGVAFLLFDCDRFKAINDTYGHAKGDRVLT 383 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++D LV+ + RLGG+EFA ++ +A +A + +++ S + G S Sbjct: 384 IIADALVMALRANDRLYRLGGDEFATFLSRTTPGQAKQIAQRCQSLLDASAFS-ELGISE 442 Query: 217 HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + IS GIA H E I + AD A+Y AK+ GRNR+ + + Sbjct: 443 PVGISIGIAFCGPEHAEQIDELPKHADIAMYTAKQPGRNRIALYGE 488 >gi|77918781|ref|YP_356596.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77544864|gb|ABA88426.1| response regulator receiver modulated diguanylate cyclase [Pelobacter carbinolicus DSM 2380] Length = 470 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 17/192 (8%) Query: 81 LLGYISGSILKELFI----SYNR--ISQLSRIDCLSGLLNHSAF-------ISSLGSYNE 127 ++ ISG+ L+ I N+ + +LS D L+ L NH + S Y+ Sbjct: 276 IIASISGNALENAMIFESMETNKKLLEELSVRDSLTQLYNHQYYHTRFEEEFSRAQRYDL 335 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 LS +FFDID FK+IND +GH GD V+ ++ + + R GGEEFA + Sbjct: 336 PLSCIFFDIDDFKKINDRYGHLTGDMVLRQIARLIKKLLRKSDISARYGGEEFAICLPNT 395 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALY 245 A A L +I +++I H+T+S G + + S +I AD+A+Y Sbjct: 396 GTDSANQFAERLLVLIR--ELSIQQLKGEHVTVSMGTSTYMNNNVASYRELIQLADKAMY 453 Query: 246 VAKKSGRNRVVC 257 AK+SG+NR+ C Sbjct: 454 QAKESGKNRICC 465 >gi|294649459|ref|ZP_06726883.1| response regulator [Acinetobacter haemolyticus ATCC 19194] gi|292824629|gb|EFF83408.1| response regulator [Acinetobacter haemolyticus ATCC 19194] Length = 472 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 89/197 (45%), Gaps = 17/197 (8%) Query: 77 TISLLLGYISGSILKELFISYNR-----ISQLSRI---DCLSGLLNHSAFISSLGSYNEK 128 TIS LG I +I S N+ I +L D L+ L F+ SL E+ Sbjct: 273 TISTRLGLIMMTIAPLTVSSINKVRSKLIEELQHTIAHDELTSSLTRRQFLQSLQILQEQ 332 Query: 129 L-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + + DID+FK IND++GH +GD+ + + GRLGGEEFA Sbjct: 333 AQNAGHTSAFLMLDIDHFKHINDSYGHQIGDRALQHFVKTTQTLLNPQDLFGRLGGEEFA 392 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYR 239 ++E A A +R+ + S I + I S GI ++ ST + Sbjct: 393 IFIANTNESVAYQCAEKIRQHVSESPIQLEHAQVFSIQTSIGICINTPEKNYSTEQLFKH 452 Query: 240 ADQALYVAKKSGRNRVV 256 AD ALY AK+ GRN+V+ Sbjct: 453 ADDALYRAKRQGRNQVI 469 >gi|239906697|ref|YP_002953438.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239796563|dbj|BAH75552.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 498 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 11/172 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 +N++ + D L+ + N AF L Y +S++ DID+FK IND +GH Sbjct: 312 FNQVKIRADHDGLTRIHNRRAFDERLIDELRRHQRYRHAMSLLMVDIDHFKGINDRYGHL 371 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD V+ + L + F R GGEEF ++E++A ILA LR I ++ Sbjct: 372 VGDHVLREVGSILSETLRSTDFTARYGGEEFVVILPQTAEEQARILAERLRGAIAEARF- 430 Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + G IT+S G++ + ++ +AD+ALY AK GRN+ VC S Sbjct: 431 VHDGEDFSITVSIGVSALQPGALTRRKDLLEKADKALYQAKHLGRNQ-VCTS 481 >gi|237797366|ref|ZP_04585827.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237805946|ref|ZP_04592650.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020216|gb|EGI00273.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027056|gb|EGI07111.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 531 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 11/191 (5%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGS 124 LS+V+ I + L+ + GS +L S L+R D LSGLLN H ++ L Sbjct: 70 LSMVVPFILLKRLMQRLQGSY-NDLLASQTLSDSLARHDPLSGLLNRRVFHEQLVARLQE 128 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAA 183 + + ++ D+D FK IND GH VGD I +++ L G V RLGG+EF A Sbjct: 129 TSMQTAVFLIDLDKFKLINDTHGHAVGDAAICAVAESLREATAGLQASVARLGGDEFGLA 188 Query: 184 ALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRAD 241 G+ S+ E A LA + I S+ ++S + ++ S G+A ++ RAD Sbjct: 189 VSGNFSQVELATLAESVLSKIAASRTSVS---RVALSASLGVAVSPLDGSDADILLQRAD 245 Query: 242 QALYVAKKSGR 252 A+Y K GR Sbjct: 246 SAMYRGKSGGR 256 >gi|77918248|ref|YP_356063.1| response regulator [Pelobacter carbinolicus DSM 2380] gi|77544331|gb|ABA87893.1| response regulator receiver modulated diguanylate cyclase [Pelobacter carbinolicus DSM 2380] Length = 470 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 15/169 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + LS D L+ L NH + S L YN LS +F DID FK IND +GH GD Sbjct: 301 LEDLSVRDSLTKLYNHQHYHSRLEDEFSRAQRYNLDLSCIFLDIDNFKNINDRYGHLAGD 360 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL--RKIIENSQINI 210 V+ ++ + V R GGEEFA + + AN+L R ++ +++I Sbjct: 361 MVLRQIARLISQVIRKSDISARYGGEEFAICLPNT----GGVAANELAERLLVMIRELSI 416 Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257 H+T+S G + + S +++ AD A+Y AKKSG+NR C Sbjct: 417 QQLKGEHVTVSIGTSTYSNHNVASYSELLHLADDAMYEAKKSGKNRFCC 465 >gi|73539344|ref|YP_299711.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Ralstonia eutropha JMP134] gi|72122681|gb|AAZ64867.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Ralstonia eutropha JMP134] Length = 1076 Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 13/170 (7%) Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+GL N + A + + E+++++ D+D+FK IND+ GHPVGD Sbjct: 621 IRHLALHDALTGLPNRAELTERCEAVLLHARRHGERVALLLLDLDHFKHINDSLGHPVGD 680 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKIIENSQINI 210 V+ ++D+L V R+GG+EFA G A LA L ++ E +I Sbjct: 681 DVLRTIADRLKAAVRQGDLVARMGGDEFAVVLGGLRHDTEAELAASKILARVSEALEI-- 738 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G + +T S GIA E ++ ++ AD ALY AK+ GR ++ F+ Sbjct: 739 -GGQRLRVTPSLGIAMFPADGESLTDLLKSADAALYAAKQGGRAQLRRFA 787 >gi|302186019|ref|ZP_07262692.1| GGDEF domain-containing protein [Pseudomonas syringae pv. syringae 642] Length = 424 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 198 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 247 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 248 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 307 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPSIHI 218 EEFA S E +R+ I N +I + + S+ + Sbjct: 308 EEFAIVFAAKSIDECMPHLEAIRETIANYEIQLRNKDNRPQDDQQGRQRRSGAQAGSVSV 367 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 368 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 414 >gi|167569542|ref|ZP_02362416.1| GGDEF domain protein [Burkholderia oklahomensis C6786] Length = 454 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 9/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L+EL + ++ L+ D L+G N FI + + S++ D+D FK I Sbjct: 279 LQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTI 338 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 NDN+GH VGD V+ Q + + R+GGEEF A+ +A +R Sbjct: 339 NDNYGHQVGDVVLRNFVRQCLTAIRPYDHIARVGGEEFMVLLPRMLADAASGIAERVRTS 398 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 399 IANASFGI-DGRHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKHEGRNRVVA 453 >gi|189426101|ref|YP_001953278.1| diguanylate cyclase [Geobacter lovleyi SZ] gi|189422360|gb|ACD96758.1| diguanylate cyclase [Geobacter lovleyi SZ] Length = 410 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 26/175 (14%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D ++GL + A L + +I D+D+FK+ ND +GH VGD+V+ ++ +L+ V Sbjct: 237 DDMTGLPSRRALNELLRGLGSRYAIAMVDVDHFKRFNDTYGHDVGDQVLKVVAGRLMAVS 296 Query: 167 G--TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------------ 212 G P R GGEEF G S ++AA LRK IE ++ + S Sbjct: 297 GGGRPF---RYGGEEFTVIFPGKSAKDAAPHLERLRKAIEEYKMALRSDDRPKDDSKGQV 353 Query: 213 -------GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 + +T+S G+AE + + + R AD ALY AK GRN+ VC + Sbjct: 354 SRNRQYASRDVSVTVSIGVAESGSRYTTAEEVIRAADSALYRAKNGGRNQ-VCLA 407 >gi|71737352|ref|YP_276536.1| response regulator /diguanylate cyclase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557905|gb|AAZ37116.1| response regulator, putative/diguanylate cyclase, putative [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322716|gb|EFW78809.1| response regulator, putative/diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320330499|gb|EFW86478.1| response regulator, putative/diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea str. race 4] Length = 551 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + Q A + +++R ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDLFC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRN+V Sbjct: 497 TFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 533 >gi|330869804|gb|EGH04513.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 722 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 29/214 (13%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115 +G +L ++ + ++ T LL+ + + +L + ++ L+ D L+GL N Sbjct: 238 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 294 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L Sbjct: 295 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 354 Query: 172 VGRLGGEEFAAAALG------SSEQEAAILANDLRKIIENSQI----NISSGPSIHITI- 220 V RLGG+EF G Q+ +LA++LR+++ + PSI I + Sbjct: 355 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 414 Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G+A + ++ RAD ALY AK SGRN Sbjct: 415 PDDGLAP-------ADLLKRADIALYRAKDSGRN 441 >gi|330505288|ref|YP_004382157.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328919574|gb|AEB60405.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 366 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 9/169 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 +Y + +L++ D L+G+ + +F +L ++ L +V D+D+FKQ+ND +GH Sbjct: 182 AYEELERLAQTDSLTGVASRGSFQHALQRSIQEAERSSGHLVLVLLDVDHFKQVNDQWGH 241 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD + + L F+GRLGGEEF + A L LRK I + + Sbjct: 242 EAGDMALQHICQILQHRLRVTDFLGRLGGEEFGLLLRHTDSAGADPLVEKLRKQIADQPL 301 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 G I ++ + G+A + +YR AD+ LY K+ GRN++V Sbjct: 302 EY-DGAQIALSATFGLAAWPRDGRSAAELYRTADRRLYSGKQRGRNQLV 349 >gi|257456482|ref|ZP_05621678.1| putative ggdef domain protein [Treponema vincentii ATCC 35580] gi|257446142|gb|EEV21189.1| putative ggdef domain protein [Treponema vincentii ATCC 35580] Length = 686 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 39/240 (16%) Query: 33 IFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVIISITISLLLGYISGSIL 90 I+F I I ++I +FLFY + Y L+ L+E LV+I +L Sbjct: 463 IWFYILIISLI----VFLFY-KIHKLYWLQRYADLLEEKQLVLIQDNFTL---------- 507 Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQI 142 +LS +D L+G+ N +I LG + ++++ FDID+FK Sbjct: 508 ----------KELSLLDHLTGIGNRR-YIDMLGLKIWQMAMEHKTAIAVMMFDIDFFKNY 556 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD+++ + L T +GR GGEEF +A +A +RK Sbjct: 557 NDRFGHQAGDELLRLIGADLKKRIRTETDLIGRYGGEEFLIVMYNLFPDKAMHIAEGIRK 616 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259 +E TIS G+ E +I++AD ALY AK++GRN+VV + Sbjct: 617 TVETMHERHPKEIVGQATISIGVFSETPSEEDTFEQMIHKADCALYRAKQTGRNKVVFYD 676 >gi|119776713|ref|YP_929453.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119769213|gb|ABM01784.1| GGDEF domain protein protein [Shewanella amazonensis SB2B] Length = 312 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 90/169 (53%), Gaps = 19/169 (11%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHP 149 ++++LS D L+GL N F S L +NE L+++ D+D+FK ND+FGH Sbjct: 142 KVAKLSMHDPLTGLANRRLFNSFL--HNEWRRSQREQVPLTLILLDLDHFKSCNDHFGHL 199 Query: 150 VGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQ 207 VGD+ + +S L+ V P R GG+EF A LG++ A + LA +R IEN Sbjct: 200 VGDEHLQQVSQVLLSVCQRPTDLACRFGGDEF-ALVLGNTNAAAGLGLAEKVRSTIENLN 258 Query: 208 INISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253 I I G + +T S GIA E +T+ AD ALY AK +G+N Sbjct: 259 IKIEDG--LRLTSSLGIATLEPGQQMEQENTLCSLADSALYQAKAAGKN 305 >gi|94985714|ref|YP_605078.1| diguanylate cyclase with PAS/PAC sensor [Deinococcus geothermalis DSM 11300] gi|94555995|gb|ABF45909.1| diguanylate cyclase with PAS/PAC sensor [Deinococcus geothermalis DSM 11300] Length = 531 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N ++L + + S+V DID+FKQIND GH GD V+ ++ Sbjct: 365 DPLTGLHNRRFLQTALEEAQGRAAASAQPFSLVIVDIDHFKQINDRVGHGGGDAVLHSVA 424 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L GT + R GGEEF L + EAA+ + + Q+ + G ++ T Sbjct: 425 RLLEAHRGTGETLCRYGGEEF-VLVLPDTPLEAALTRAEAYRAALEGQVVMYGGQALRCT 483 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+A H ++ AD+ALY AK+ GRNRVV Sbjct: 484 ASLGVATFPTHGTAAEVVLTAADEALYTAKRQGRNRVV 521 >gi|172058526|ref|YP_001814986.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15] gi|171991047|gb|ACB61969.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15] Length = 565 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 9/174 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVG 151 R+ SR D ++ L N+ A + G + S + D+D+FKQIND +GH VG Sbjct: 392 ERLLTDSRTDAMTKLPNYRA-LQEWGDRRIRQRDLYPFSALMIDLDHFKQINDTYGHEVG 450 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ L+ V R GGEEF + + A I+A +R+ + + I + Sbjct: 451 DIVLFEVAKLLMQATRITDLVARYGGEEFVVLLPNTDLESAQIVAERIRETLHANPIQV- 509 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYV-AKKSGRNRVVCFSDIENN 264 G S+ IT S G+ ++++I AD+A+Y+ AK GR+RV + + + Sbjct: 510 EGDSLRITASIGVDTLNELGDLASLIRNADRAMYIGAKFQGRDRVASYQEWKER 563 >gi|325497661|gb|EGC95520.1| diguanylate cyclase, GGDEF protein [Escherichia fergusonii ECD227] Length = 463 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 15/161 (9%) Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N S F + L N+ ++ DID+FK +ND +GHP GDKVI + D Sbjct: 296 DPLTNIFNRSYFFNELKGQVNSGDNKPFCVMIMDIDHFKSVNDTWGHPEGDKVIKAVVDI 355 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF +E LA +RK +E N Q I+ +I Sbjct: 356 IGKSIRPDDVLARVGGEEFGVMLTHLECKEGEELAERIRKNVEQLTDNNPQYAIAQKVTI 415 Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 I + + H IYR AD ALY AK +GRN+V+ Sbjct: 416 SIGVVVTQGDVLHPND----IYRLADNALYNAKATGRNKVI 452 >gi|294625114|ref|ZP_06703759.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600578|gb|EFF44670.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 375 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N AF +L + E+ LS+ D+D+FK +ND GH GD V+ Sbjct: 219 TRTDPLTGLPNRRAFAVALAAATEQARAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLR 278 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 LS L + R GGEEF + +A + LR+ + I ++ Sbjct: 279 ALSTLLRAHMAGAGTIARYGGEEFVLLLPNADLLQARVQCEYLRQSVAAMTI------AL 332 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +T+S G+A +E + +I RADQALY AK+ GR++VV Sbjct: 333 PVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE 375 >gi|190573466|ref|YP_001971311.1| putative GGDEF and GAF signalling protein [Stenotrophomonas maltophilia K279a] gi|190011388|emb|CAQ45003.1| putative GGDEF and GAF signalling protein [Stenotrophomonas maltophilia K279a] Length = 356 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 14/173 (8%) Query: 91 KELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQI 142 +++ ++ N +++ SR D L+GL N A ++L ++ + DID+FK I Sbjct: 186 QDVLLAQNADLAEQSRTDALTGLPNRRAMAAALEEAVAEIDGQPGVACVALLDIDHFKHI 245 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GD+V+A L L F R GGEEF A G+ + A + LR Sbjct: 246 NDFQGHATGDRVLAELGVLLRSHFAGRGMAARYGGEEFVAVMPGTDLRTAELQCEFLRLA 305 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + + +TIS G+A+ E + ++ RAD+ALY AK +GRNRV Sbjct: 306 VADLPLGFP------VTISIGVAQHQPGESVDEMLARADKALYRAKGNGRNRV 352 >gi|170691900|ref|ZP_02883064.1| diguanylate cyclase [Burkholderia graminis C4D1M] gi|170143184|gb|EDT11348.1| diguanylate cyclase [Burkholderia graminis C4D1M] Length = 563 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 87/182 (47%), Gaps = 25/182 (13%) Query: 90 LKELFISYNRI-SQLSRIDCLSG---------LLNHSAFISSLGSYNEKLSIVFFDIDYF 139 L E S N + S +R D L+G LL H + LG N+ L + D+D+F Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIDRAHLG--NQPLCMAIADLDHF 429 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 KQIND FGH GD+ + + +GRLGGEEF G+ LA Sbjct: 430 KQINDRFGHAAGDRALEHFVETCRAELRGADAIGRLGGEEFGVLLPGTD------LAGG- 482 Query: 200 RKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 R+++E ++ + + P S+ +++S GI E + I+ RAD ALY AK GR+ Sbjct: 483 REVVERLRLRLKAVPSAKLPASVTLSVSIGITELSVDDLPERIMSRADMALYAAKTGGRD 542 Query: 254 RV 255 R Sbjct: 543 RT 544 >gi|217962904|ref|YP_002341482.1| GGDEF domain protein [Bacillus cereus AH187] gi|229142158|ref|ZP_04270683.1| GGDEF domain protein [Bacillus cereus BDRD-ST26] gi|217068114|gb|ACJ82364.1| GGDEF domain protein [Bacillus cereus AH187] gi|228641447|gb|EEK97753.1| GGDEF domain protein [Bacillus cereus BDRD-ST26] Length = 348 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 27/233 (11%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS----GSILK 91 SIFI + F N++ I + P +L +++S+V + + S + YI+ +L+ Sbjct: 126 SIFIRWIWF--NVYSLSILIVPLS----MLFKDMSIVALYLVCSSVAAYITFISANYVLQ 179 Query: 92 --ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ELF ++ Q + ID L+GL N F I + N+ L ++ DID+FK Sbjct: 180 SNELF---QKMKQYATIDALTGLGNVRQFDLEMNHHIGNKRMKNDSLCLLLIDIDHFK-- 234 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 +GHP GD+V+ + L V P R GGEEFA + +R Sbjct: 235 -STYGHPAGDEVLKQIGRILREVSTFPDLAFRKGGEEFALLIPQKGLAYGMRMGEQVRAA 293 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + G I IT+S GI+ +++ I AD ALY +K++GRN+V Sbjct: 294 VEKHSFQLLDGTKIKITVSVGIS--VYEQSPEQFIQAADDALYYSKRNGRNQV 344 >gi|332533055|ref|ZP_08408925.1| GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332037534|gb|EGI73987.1| GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 507 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 78/151 (51%), Gaps = 11/151 (7%) Query: 108 CLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 L+GLLN F + +I+ DID+FK++ND FGH GD+ + L+D + + Sbjct: 363 SLNGLLNQLMFKQT------PFAILEIDIDFFKRVNDTFGHDKGDEALKSLTDIIKKLSR 416 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 V R+GGEEF + Q A +A LRK +E++ + ITIS GIA Sbjct: 417 KDDIVARIGGEEFVLVLPNENSQSALKIAERLRKTVESTNMETIG----FITISIGIATW 472 Query: 228 C-HKEPISTIIYRADQALYVAKKSGRNRVVC 257 H I + AD+ALY AK+ GRN+ + Sbjct: 473 PEHSNDIDQVYKCADKALYHAKEHGRNQCIV 503 >gi|330887960|gb|EGH20621.1| response regulator, putative/diguanylate cyclase [Pseudomonas syringae pv. mori str. 301020] Length = 436 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 264 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 323 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + Q A + +++R ++I+ + P+ + Sbjct: 324 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDLFC 381 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRN+V Sbjct: 382 TFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 418 >gi|330829429|ref|YP_004392381.1| GGDEF domain-containing protein [Aeromonas veronii B565] gi|328804565|gb|AEB49764.1| GGDEF domain protein [Aeromonas veronii B565] Length = 412 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 9/200 (4%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128 LSL+ LLL + + L + ++ + + D L+GL + F + Sbjct: 206 LSLLFTIARSYLLLSLVHTRQQQALLATQRKLERRANQDELTGLFSRHYFERQVALRARD 265 Query: 129 L----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + ++ D+D FKQIND GHP GD ++ + + + GRLGG+E A Sbjct: 266 VRSPSQLLLIDLDNFKQINDRHGHPAGDAMLRAVGRVIANTLPSEGMAGRLGGDEL-ALL 324 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 L + Q + L++ I + ++ GP I++S G+ E RADQAL Sbjct: 325 LMADPQTLPDYCHSLQQQIAEATRELAGGP---ISLSIGLTSLHPDEGFEAAYLRADQAL 381 Query: 245 YVAKKSGRNRVVCFSDIENN 264 Y AK++GR R C ++ +N Sbjct: 382 YAAKQAGRQR-ACVQELHHN 400 >gi|295675892|ref|YP_003604416.1| diguanylate cyclase [Burkholderia sp. CCGE1002] gi|295435735|gb|ADG14905.1| diguanylate cyclase [Burkholderia sp. CCGE1002] Length = 563 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 84/183 (45%), Gaps = 27/183 (14%) Query: 90 LKELFISYNRI-SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 L E S N + S +R D L+G L+ F I + E L + D+D+FKQ Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIDRAHADREPLCMAIADLDHFKQ 431 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-- 199 IND FGH GD+ + D + +GRLGGEEF + A DL Sbjct: 432 INDRFGHAAGDRALEHFVDTCRAELRSSDAIGRLGGEEFG----------LLLPATDLAG 481 Query: 200 -RKIIENSQINISSGPSIHITISA------GIAERCHKEPISTIIYRADQALYVAKKSGR 252 R+++E ++ + + PS + SA GI E + ++ RAD ALY AK GR Sbjct: 482 GREVVERLRLRLKAMPSPKLPASAGLSVSIGITELSLDDLPERLMSRADTALYAAKTGGR 541 Query: 253 NRV 255 +R Sbjct: 542 DRT 544 >gi|84515270|ref|ZP_01002632.1| two component diguanylate cyclase [Loktanella vestfoldensis SKA53] gi|84510553|gb|EAQ07008.1| two component diguanylate cyclase [Loktanella vestfoldensis SKA53] Length = 442 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 12/164 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + D L+GL N L +E+ L+++ DID+FK IND +GH GD+V Sbjct: 270 QAAVTDPLTGLFNRRYADHHLARMSEQSAVAGSALAVMMIDIDHFKAINDTYGHAAGDRV 329 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213 + L+ +L V R+GGEEF A +S ++A A+ LR+++ + ++ Sbjct: 330 LVALAARLRDNLRAVDLVARIGGEEFLIAMPRTSARQAQGAADRLRRLVSQTPFDLGEAY 389 Query: 214 PSIHITISAGIA---ERCHKEPISTIIYR-ADQALYVAKKSGRN 253 I +T+S G+A E +P + ++ AD ALY AK +GR+ Sbjct: 390 APIPVTVSVGVALSDEAGQTQPDTHLMCDLADAALYRAKSAGRD 433 >gi|323492191|ref|ZP_08097349.1| hypothetical protein VIBR0546_03395 [Vibrio brasiliensis LMG 20546] gi|323313504|gb|EGA66610.1| hypothetical protein VIBR0546_03395 [Vibrio brasiliensis LMG 20546] Length = 565 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/159 (38%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 QL D ++ L N A + E+ L + DID+FK INDN GH GDKVI + Sbjct: 406 QLRNSDVMTHLDNKLALREQIELNLEQPGLYLAMIDIDHFKAINDNIGHLGGDKVIYHTA 465 Query: 160 DQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 D + F P + + R GGEEF + E +A LR+++E S + I + +I+ Sbjct: 466 DLIRRCFPKPGALSLARYGGEEFCILFNANDENDAYEQCEFLRQMVEQSSVEIDN-TTIN 524 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TIS GI P STI RAD+A+Y AK GRN+VV Sbjct: 525 FTISIGITGN-QVSPHSTIS-RADKAMYQAKGFGRNQVV 561 >gi|257093489|ref|YP_003167130.1| response regulator receiver modulated diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046013|gb|ACV35201.1| response regulator receiver modulated diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 639 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 11/171 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNE----KLSIVFFDIDYFKQINDNFG 147 +++ R+ + + D L+ L N F++S ++ + ++ + DID+FK+IND G Sbjct: 468 VAHKRLLREALTDTLTQLPNRRHGLDFLASEWAFAQSNALPMACLLLDIDHFKRINDTLG 527 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 HP GD V+ L+D L V R GGEEFAA ++ Q A +A +R +++ Sbjct: 528 HPAGDAVLQQLADLLKRASRPEDLVFRYGGEEFAAVLPNANAQTAVQIAERIRGLVQKYD 587 Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + SI +T+S G+A K+ +I AD ALY AK GRNRV Sbjct: 588 F-LWQRRSIPLTVSIGVAILSSTGKDS-QALIEAADAALYQAKNGGRNRVT 636 >gi|226939565|ref|YP_002794638.1| hypothetical protein LHK_00636 [Laribacter hongkongensis HLHK9] gi|226714491|gb|ACO73629.1| Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Laribacter hongkongensis HLHK9] Length = 759 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 7/168 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +R+ L+ D L+ LLN A L + +++F D+D FK IND+FGH GD Sbjct: 320 DRLVFLASHDPLTRLLNRDALFRKLEDICLSGIEQSFAVLFIDLDRFKLINDSFGHATGD 379 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ ++ +L V G+ + R GG+EF L + Q A++ R + E SQ Sbjct: 380 NLLRIVAARLSFVVGSNALLARQGGDEF-TLLLEDTGQRTAVIDMANRLLDELSQPITLE 438 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +HIT S GIA H + +T++ AD ALY AK +G+N F+ Sbjct: 439 NQELHITASIGIALAPEHGKDAATLLRHADTALYRAKDAGKNTFAFFT 486 >gi|254514813|ref|ZP_05126874.1| ggdef domain protein [gamma proteobacterium NOR5-3] gi|219677056|gb|EED33421.1| ggdef domain protein [gamma proteobacterium NOR5-3] Length = 449 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 4/148 (2%) Query: 109 LSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 L G+L I+ S + S++ D+D FKQ+ND +GH +GD+V+ ++ L V Sbjct: 302 LDGILKRENQIAH--SAGDAYSLLMIDVDDFKQVNDTYGHAIGDRVLKQVAKVLTHVVRQ 359 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-R 227 F R GG+E S A A+ + + I + +N+ G I I +S G+AE R Sbjct: 360 TDFAFRYGGDELLVVLTSSDIDAARRKADAILQSIRAAPVNLDDGRVIPIKVSIGVAEYR 419 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255 H + T++ RAD+A+Y AK +G+N+V Sbjct: 420 GHPD-YETMLKRADEAVYAAKTAGKNQV 446 >gi|325929599|ref|ZP_08190713.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] gi|325540109|gb|EGD11737.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] Length = 507 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 88/180 (48%), Gaps = 18/180 (10%) Query: 96 SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145 S NR+ L+ D L+G+ N ++L E LSI F D+D FK++ND Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDEFKRVNDA 376 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203 GH VGD+V+ + L + T V R GGEEF L ++ +AA++ + L +I Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTPADAALMVIERILAEIA 435 Query: 204 ENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259 + GP +HIT SAG+A E I ++ AD LY +K GRNRV + Sbjct: 436 RTPMAQLQGGP-LHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494 >gi|298241021|ref|ZP_06964828.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963] gi|297554075|gb|EFH87939.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963] Length = 357 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++ L N A I + S +++F D+D+FKQ+ND +GH VGD ++ + Sbjct: 188 DPVTELPNRRAIIDEIEHALSWAHSIQASCALLFVDLDHFKQVNDLWGHRVGDALLHEVG 247 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-- 217 + + VGR GGEEF L +S A +A +R I+ + IH Sbjct: 248 RRFRTLMTPQCIVGRYGGEEFVFVLLDASLPGAKAIAEQVRTILATQPYTWQADSGIHTI 307 Query: 218 -ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 +T S GIA R ++ +I +AD A+YVAK+ GRN Sbjct: 308 TVTASIGIALSRQYEATSDDLIEQADHAMYVAKQMGRN 345 >gi|281413173|ref|YP_003347252.1| diguanylate cyclase [Thermotoga naphthophila RKU-10] gi|281374276|gb|ADA67838.1| diguanylate cyclase [Thermotoga naphthophila RKU-10] Length = 416 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 12/173 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 ++L EL+ ++ +++ D L+GL N + F + N LS + D+D FK Sbjct: 246 ALLFELYEEKEKLKEIAHRDSLTGLFNRAFFNEWIQDQVRKAQFQNVPLSFIMIDVDNFK 305 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 QIND +GH GDKV+ F++ + + F R GG+EF +S+Q+A +A+ +R Sbjct: 306 QINDTYGHLTGDKVLRFVARCISDSIRSSDFAVRYGGDEFLVVLYNTSKQQAEQVASRIR 365 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + I N S + + IS G+AE + + +AD+ +Y K+ ++ Sbjct: 366 EKIRN-----SDELGVDVDISYGVAELKPGDNYLKFLQKADEEMYGMKREKKS 413 >gi|163794463|ref|ZP_02188434.1| GGDEF domain [alpha proteobacterium BAL199] gi|159180187|gb|EDP64710.1| GGDEF domain [alpha proteobacterium BAL199] Length = 360 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 78/159 (49%), Gaps = 9/159 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L S K L ++ DID+FK ND +GH VGD+V+ + Sbjct: 181 DGLTGLANRMQFERELRSAAAKAMEDGTTLCLLMADIDHFKTFNDTYGHMVGDQVLRLVG 240 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIH- 217 L+ R GGEEF EAA +A +R +I E + SSG + Sbjct: 241 RVLIEAIRPGDLAARFGGEEFVVVLPECRLDEAARIAERIRERIGEKHVVRRSSGDDLGT 300 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+ E + +I RAD LY AK++GRNRV Sbjct: 301 VTLSLGVTAYQPGEVVGQLIERADTGLYDAKQAGRNRVA 339 >gi|270261216|ref|ZP_06189489.1| diguanylate cyclase [Serratia odorifera 4Rx13] gi|270044700|gb|EFA17791.1| diguanylate cyclase [Serratia odorifera 4Rx13] Length = 552 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 3/153 (1%) Query: 106 IDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 +D L+ + N F SL + + L+ DID FK +ND+FGH +GD V+ L Sbjct: 391 LDPLTNIYNRRKFFRECESLAARSYPLAFCLIDIDNFKNLNDSFGHDIGDSVLVAFGKLL 450 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 F + R GGEEFA + + A + + LR+ + + G ++ T S Sbjct: 451 QDAFRSSDIFCRYGGEEFAVILGNCTLENAREIMSKLRERTHQLILTLDDGQTVRFTTSC 510 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 GIA+ + T I +AD+ALY KK+G++R+ Sbjct: 511 GIAQVNSLRLLPTAIKQADEALYFCKKNGKDRI 543 >gi|251788178|ref|YP_003002899.1| diguanylate cyclase [Dickeya zeae Ech1591] gi|247536799|gb|ACT05420.1| diguanylate cyclase [Dickeya zeae Ech1591] Length = 381 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 13/208 (6%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLL 113 L+P G+ +L + ++ + ISL++ + GS+L + Y + +R D L+G L Sbjct: 155 LSPAPGVGTLLTSSPEIITLG-CISLMIA-VMGSLLSLVAKKYLIELPTTARYDDLTGFL 212 Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 AF + + N L + DID+FKQ+ND+ GH GDK + ++D + F Sbjct: 213 RRDAFYQLSQRALKTADQENSPLCAMLIDIDHFKQVNDSLGHAAGDKALKAVADIIRHSF 272 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIA 225 + RLGG+EFA +++ A +A +R+ I E Q S P I ++I +A Sbjct: 273 RNRDIICRLGGDEFAVVLPNITQENAIRVAERVREGIYEFGQSASSISPGISVSIGL-VA 331 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRN 253 E + II RAD LY AK++ RN Sbjct: 332 AELPDEELDEIIRRADVNLYRAKRT-RN 358 >gi|188583241|ref|YP_001926686.1| diguanylate cyclase [Methylobacterium populi BJ001] gi|179346739|gb|ACB82151.1| diguanylate cyclase [Methylobacterium populi BJ001] Length = 390 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 97/181 (53%), Gaps = 22/181 (12%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDN 145 E I +N ++++R D L+GL N ++++G + E L + DID+FK+ ND Sbjct: 212 EAMIEHN--AEMARTDQLTGLFNRH-HLATIGVDLIPKNDREPLGALLIDIDHFKRFNDT 268 Query: 146 FGHPVGDKVIAFLSDQLVVVF-----GTPMFVG---RLGGEEFAAAALGSSEQEAAILAN 197 GH GD+ I +SD + + TP VG R GGEE G +AA L + Sbjct: 269 QGHLAGDRCIRTVSDLVREMLIPANENTPP-VGTAVRFGGEEILVLLPGMDAAQAAALGD 327 Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 +R+ +E I + GP+ +T+S G+A ++ HKE + T++ AD ALY AK GRNR Sbjct: 328 AIRRRVEGVGIPHPGLGPTAVVTLSIGVAAWKKGHKE-LDTLVNAADAALYQAKNLGRNR 386 Query: 255 V 255 V Sbjct: 387 V 387 >gi|152990872|ref|YP_001356594.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] gi|151422733|dbj|BAF70237.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] Length = 609 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 10/138 (7%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +I+ DID+FK +ND +GH GDKVI L D + V R GGEEF + Sbjct: 470 TIMMLDIDHFKMVNDTYGHDAGDKVIKILVDTIKENIRKSDVVVRFGGEEFLVLLYNCHK 529 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQAL 244 +++ +A ++RK +I++ IH T+S G+ E P T I AD AL Sbjct: 530 EDSLQIAENIRKSFSKKRIDVGD-EKIHKTVSIGLCEF----PKDTKQFWHAIKLADMAL 584 Query: 245 YVAKKSGRNRVVCFSDIE 262 Y AK++GRN++V + +E Sbjct: 585 YQAKENGRNKIVACNSVE 602 >gi|297579178|ref|ZP_06941106.1| GGDEF family protein [Vibrio cholerae RC385] gi|297536772|gb|EFH75605.1| GGDEF family protein [Vibrio cholerae RC385] Length = 353 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 120/268 (44%), Gaps = 37/268 (13%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFI---ANIFLFYIGLTPFYGLEYILVE 67 IW C F P F I+ S F+ F+ + +F+ +NI + + L + Sbjct: 98 IWSC-------FVPILFYIFTSARFA-FVTSCLFLIIQSNI------------IYWQLQQ 137 Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSL 122 + + S+ + L YI ++ ++ R + L+ D L+G N + +S Sbjct: 138 TGAAISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSF 197 Query: 123 GSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + L ++ D+D+FK IND FGH GDKV+ + V G R+GG Sbjct: 198 QHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFAQVVGDNNLY-RIGG 256 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTI 236 EEF S ++A + LR I+ SQ + G + +TIS G+ E + ++ + Sbjct: 257 EEFCVTLFDQSLEQAGRVCERLRTIV--SQHLFAFGEKRVQVTISIGVCEYQAGDQLNDL 314 Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENN 264 + AD LY AKK+GRN+V F N Sbjct: 315 LKFADMELYRAKKAGRNQVRLFRHGSTN 342 >gi|75676900|ref|YP_319321.1| diguanylate cyclase/phophodiesterase [Nitrobacter winogradskyi Nb-255] gi|74421770|gb|ABA05969.1| diguanylate cyclase/phosphodiesterase [Nitrobacter winogradskyi Nb-255] Length = 778 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 21/173 (12%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I+ L+R D L+ L N +F ++SL + +++F D+D FKQIND GHP G Sbjct: 336 KINHLARFDSLTELPNRLSFRDEIERLLASLNGESRLSALLFIDLDQFKQINDTLGHPCG 395 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQIN 209 D+++ ++D+L + FV R GG+EF + S E+ +A+ + ++ E +++ Sbjct: 396 DRLLCMVADRLRGMLRPEDFVARFGGDEFVVFQQNIRSPEEASALARRIVERLAERYEVD 455 Query: 210 ---ISSGPSIHITI-SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + G SI I + S GI ++ AD ALY AK GR CF Sbjct: 456 RHLVEIGASIGIALTSPGIT-------ADNLLKHADMALYRAKADGRG-TFCF 500 >gi|16264943|ref|NP_437735.1| hypothetical protein SM_b20900 [Sinorhizobium meliloti 1021] gi|15141082|emb|CAC49595.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021] Length = 644 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 24/182 (13%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+ L N S+F L +++ L+++ D+D FK +ND FGH GD Sbjct: 286 IEHLAHHDALTDLSNRSSFDRRLRQALAAAVHHDDALAVLCLDLDRFKAVNDIFGHGEGD 345 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKI----IENSQ 207 +++ ++D L G + RLGG+EFA G+++ EAA +LA+ + K+ ++ + Sbjct: 346 RILRKVADILRAGAGEADTIARLGGDEFAIVQTGAAQPEAARLLADRILKLFSEEMDTRR 405 Query: 208 INISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 ++ G SI + I G AER + AD ALY AK++G+ + CF D E + Sbjct: 406 DPMAVGVSIGVAICPGDGTTAERLYGN--------ADTALYRAKQTGKG-IACFFDAEMD 456 Query: 265 TC 266 Sbjct: 457 AA 458 >gi|115358794|ref|YP_775932.1| diguanylate cyclase [Burkholderia ambifaria AMMD] gi|115284082|gb|ABI89598.1| diguanylate cyclase [Burkholderia ambifaria AMMD] Length = 492 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 14/193 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I +S++LG + L+ + + + L+R D L+GL N F L + Sbjct: 300 IAVSVMLG----TQLRRRMRAESELVLLARTDGLTGLNNRRTFGEVLDREWRRARRSRSV 355 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 S++F D+D FK ND +GH GD +A ++ + P R GGEEF + Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 415 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALY 245 E AA +A +R I+ + + H+T S G+A + + ++I AD+ALY Sbjct: 416 PETGAAQIAERIRAAIDELALEHAGSEHGHVTASIGLASWTPDDDVEAGSVIKAADEALY 475 Query: 246 VAKKSGRNRVVCF 258 AK +GRN+V F Sbjct: 476 YAKATGRNKVAAF 488 >gi|95930998|ref|ZP_01313727.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans DSM 684] gi|95133007|gb|EAT14677.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans DSM 684] Length = 301 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 95/181 (52%), Gaps = 9/181 (4%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136 Y+S + E+ ++ ++++ D L+G+ N + S L + LS++ D+ Sbjct: 118 YLSVQDVSEVVSYQKKLVRMNQTDPLTGVYNRNFMESQLEKEVVRCQRFKHNLSLLMIDV 177 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK +NDN+GH GD + ++ ++ F+ R GG+EF ++ +A +A Sbjct: 178 DLFKNVNDNYGHQCGDFALKEITQRISAKIRQTDFLIRYGGDEFCCLLTETAPDKAIKVA 237 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 LR+ I NS + ++TIS G+A + + +++ +AD ALY+AK+SGRN V Sbjct: 238 ELLRQQICNSPFQFKD-ITFNVTISIGVAGFDETDIDVESLLRKADSALYMAKQSGRNTV 296 Query: 256 V 256 + Sbjct: 297 I 297 >gi|299535431|ref|ZP_07048753.1| hypothetical protein BFZC1_05393 [Lysinibacillus fusiformis ZC1] gi|298729192|gb|EFI69745.1| hypothetical protein BFZC1_05393 [Lysinibacillus fusiformis ZC1] Length = 627 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 18/175 (10%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQ 141 I+ SIL+ ++ ++ +D L+ L S F+ Y++ + DID FK+ Sbjct: 454 IANSILR------TQLQEMVDLDHLTKLYARSYLDQFVEKSLEYDQSGMFLLIDIDNFKR 507 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GH VGDK++ ++ QL G+ R GGEE + E+EA LA+ + + Sbjct: 508 INDTYGHQVGDKILVQIAVQLKETIGSRGICARWGGEEMSVYVPNIDEKEALELASTIVE 567 Query: 202 IIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNR 254 + I S +TISAG+ + + ++ AD ALY AK SG+NR Sbjct: 568 V-------IPSATDPQVTISAGLITWDERDRPAFQSVFLHADTALYEAKNSGKNR 615 >gi|260424420|ref|YP_003212621.1| hypothetical protein Ctu_1p00450 [Cronobacter turicensis z3032] gi|260219228|emb|CBA34582.1| hypothetical protein Ctu_1p00450 [Cronobacter turicensis z3032] Length = 493 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 21/181 (11%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 EL + ++ D L+GL N F ++L + +S++ DID+FK+ ND Sbjct: 299 ELLKANQTFKSMAMADSLTGLANRRKFDTTLAKVLADSATSGSPVSLIMLDIDFFKRYND 358 Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 + GH GD + + + L +V T V R GGEEFA ++ +EA LA +I Sbjct: 359 SRGHAAGDACLRLIGNTLQMVTLRTCDLVARYGGEEFAIVLPETTGEEALALAQRAVSMI 418 Query: 204 ENSQINISSG--PSIHITISAGIAERCH-------KEPISTIIYRADQALYVAKKSGRNR 254 + + S P +TISAG CH ++ S +I AD ALY+AK GRN+ Sbjct: 419 RDKHLPHPSTDLPEQVVTISAG----CHTVRGNGREDAFSVLIRGADTALYLAKNRGRNQ 474 Query: 255 V 255 Sbjct: 475 A 475 >gi|220935449|ref|YP_002514348.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp. HL-EbGR7] gi|219996759|gb|ACL73361.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp. HL-EbGR7] Length = 450 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I L+ D L+GL N + F I + + KL+++F D+D FK +ND GH VG Sbjct: 279 QIHHLAHHDLLTGLPNRAMFFDRLEAAIDEASAESRKLALMFVDLDRFKPVNDRHGHAVG 338 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210 D+++ ++ ++ + VGR+GG+EF +E +A A LR +E + +I Sbjct: 339 DQLLQAVAGRMHTILRAGDLVGRIGGDEFIVLLHDIRTEDDALTAAEKLRCHLE-TPFDI 397 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G + I+ S GIA H + + RAD+A+Y++K GRN +S Sbjct: 398 -EGRRLQISASIGIALYPSHADNARELARRADEAMYLSKAEGRNLTTLYS 446 >gi|89092556|ref|ZP_01165509.1| putative diguanylate cyclase (GGDEF) [Oceanospirillum sp. MED92] gi|89083068|gb|EAR62287.1| putative diguanylate cyclase (GGDEF) [Oceanospirillum sp. MED92] Length = 337 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 13/176 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQ 141 K L ++ S+ + D L+GLLN F + + SIV FD+D+FK Sbjct: 156 KSLKERLDKASRDAMEDELTGLLNRKGFRKCIEELTAERAVPLDQVPYSIVSFDVDHFKN 215 Query: 142 INDNFGHPVGDKVIAFLSDQ-LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND +GH GDKV+ ++ L V G + V R GGEEF + A ++A +R Sbjct: 216 VNDTYGHLFGDKVLHNTAEVILKSVRGNDIAV-RFGGEEFILLLPDTDLDGARLVAEKVR 274 Query: 201 KIIENSQ-INISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 IE + IN +G + IT+SAGI+ H + +I AD ALY AK +GRNR Sbjct: 275 TTIEKVRWINRRTGKKLDPITLSAGISANQHSMALEEVIELADVALYQAKGAGRNR 330 >gi|95929161|ref|ZP_01311905.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95134659|gb|EAT16314.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 515 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 109/256 (42%), Gaps = 22/256 (8%) Query: 16 EKNLESFSPHTFMIYFSI--FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI 73 EK LE F M I FF I I IA + L Y + N SLV Sbjct: 262 EKKLEDFLDRVHMEVEEIGKFFDIKIQNQKSIAEVLQIANAELSVLNLSYEQM-NRSLVE 320 Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126 ++ + +L EL + +L+ +D L+ NH F I+ + Sbjct: 321 KTVQLEMLTA--------ELEKKNKLLERLANVDGLTEAYNHRYFQNFLDREINRSERND 372 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 LS+V DID FK+ ND GH VGD ++ +D + R GGEEF Sbjct: 373 YTLSVVMVDIDNFKKFNDLHGHQVGDYILKQFADVARSLLREYDLFARYGGEEFVLVLPE 432 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPIST--IIYRADQA 243 ++ QE ++A R + + +IT S G+++ K+ I +I +AD A Sbjct: 433 TNAQEGEVVAEKFRSTLSEHTFT-HERETYYITASFGVSDISPAKDKIDKNDVISQADSA 491 Query: 244 LYVAKKSGRNRVVCFS 259 LY +KK GRNRV +S Sbjct: 492 LYESKKKGRNRVTVYS 507 >gi|330888125|gb|EGH20786.1| sensory box protein [Pseudomonas syringae pv. mori str. 301020] Length = 630 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 29/214 (13%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115 +G +L ++ + ++ T LL+ + + +L + ++ L+ D L+GL N Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 301 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L Sbjct: 302 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361 Query: 172 VGRLGGEEFAAAALG------SSEQEAAILANDLRKIIENSQI----NISSGPSIHITI- 220 V RLGG+EF G Q+ +LA++LR+++ + PSI I + Sbjct: 362 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 421 Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G+A + ++ RAD ALY AK SGRN Sbjct: 422 PDDGLAP-------ADLLKRADIALYRAKDSGRN 448 >gi|325925833|ref|ZP_08187203.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] gi|325543768|gb|EGD15181.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] Length = 955 Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 8/174 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +L L I + + + D L+GL N F IS L + DID+FK+ Sbjct: 780 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSGRTLVLAILDIDHFKR 839 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND++ H GD V+ + L RLGGEEFA ++ EA L +R Sbjct: 840 INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEAQALCLRIRA 899 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +++ N +S + +T SAG+A + S+++ RAD ALY AK +GR+R+ Sbjct: 900 LF-HARHNWASVEGLQVTFSAGVAALRDDDTGSSLMQRADHALYEAKSAGRDRI 952 >gi|320324868|gb|EFW80940.1| sensory box protein [Pseudomonas syringae pv. glycinea str. B076] Length = 729 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 29/214 (13%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115 +G +L ++ + ++ T LL+ + + +L + ++ L+ D L+GL N Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 301 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L Sbjct: 302 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361 Query: 172 VGRLGGEEFAAAALG------SSEQEAAILANDLRKIIENSQI----NISSGPSIHITI- 220 V RLGG+EF G Q+ +LA++LR+++ + PSI I + Sbjct: 362 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 421 Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G+A + ++ RAD ALY AK SGRN Sbjct: 422 PDDGLAP-------ADLLKRADIALYRAKDSGRN 448 >gi|227822959|ref|YP_002826931.1| putative GGDEF/EAL domain transcriptional regulator [Sinorhizobium fredii NGR234] gi|227341960|gb|ACP26178.1| putative GGDEF/EAL domain transcriptional regulator [Sinorhizobium fredii NGR234] Length = 784 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 24/180 (13%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+ L N S+F ++ + NE+L+I D+D FK +ND FGH GD Sbjct: 350 IEHLAHHDALTDLSNRSSFERRMSQALTVAAARNEQLAIFCLDLDRFKAVNDIFGHGEGD 409 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKIIENSQIN- 209 +++ ++D L G + RLGG+EFA G+++ EAA +D LR E + Sbjct: 410 RILRKVADILRAAAGEADTIARLGGDEFAILQTGAAQPEAARQLSDRILRLFAEEMDTHR 469 Query: 210 --ISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 ++ G S+ + + G AER + AD ALY AK+SG+ + CF D E + Sbjct: 470 DPMAVGVSMGVAVYPGDGTTAER--------LCSNADTALYRAKQSGKG-IACFFDAEMD 520 >gi|188586587|ref|YP_001918132.1| response regulator receiver modulated diguanylate cyclase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351274|gb|ACB85544.1| response regulator receiver modulated diguanylate cyclase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 340 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 20/190 (10%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQI 142 LK L + + +L+ ID L+ L N F ++ G + LSI+ DIDYFK Sbjct: 150 LKLLEETNKKFEKLATIDELTQLANRRLFDETMRGEWRRANRNGYNLSIILLDIDYFKNF 209 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD+ + ++ +L + P F R GGEEFA + + A +A +R+ Sbjct: 210 NDAYGHQAGDECLKAIAKKLKFLMMRPGDFAARYGGEEFAVILPETDLRGAHSVAEKIRQ 269 Query: 202 IIENSQI-NISSGPSIHITISAGIA-----------ERCHKEPISTIIYRADQALYVAKK 249 IE +I + S + ++T+S G+A ++ + I +I AD+ALY AK Sbjct: 270 GIEELKIPHCDSKVAQYVTVSLGVASADLKNCQGGRDQATDDEIKILIEHADEALYKAKD 329 Query: 250 SGRNRVVCFS 259 +GRN + Sbjct: 330 NGRNTIALMQ 339 >gi|21242238|ref|NP_641820.1| hypothetical protein XAC1486 [Xanthomonas axonopodis pv. citri str. 306] gi|294665676|ref|ZP_06730952.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21107662|gb|AAM36356.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] gi|292604571|gb|EFF47946.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 324 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 15/196 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119 + +S +++++ ++L +GY +++ + + +L+ +D L+GL N I Sbjct: 133 QGVSTIVVTL-VTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTHQI 188 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ S++ D+D+FK++ND +GH GD ++ L+ L P V R GGEE Sbjct: 189 DQRQPHDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVREPHQVFRFGGEE 248 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F S E LRK+I N GP IT+S G A + R Sbjct: 249 FVVLLRAGSLAELEAATERLRKVIRNGL----RGPGGRITVSLGAARHDGETHWQDWFSR 304 Query: 240 ADQALYVAKKSGRNRV 255 AD ALY+AK GR+ V Sbjct: 305 ADAALYLAKNGGRDSV 320 >gi|304312445|ref|YP_003812043.1| 7TM receptor family protein [gamma proteobacterium HdN1] gi|301798178|emb|CBL46400.1| 7TM receptor family protein [gamma proteobacterium HdN1] Length = 656 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 97/177 (54%), Gaps = 11/177 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQI 142 +++L + ++ ++S ID LS L N F +Y E+ +S++ FD+D+FK+I Sbjct: 462 VQKLASTNEQLERMSIIDELSQLHNRRYFNHKFETDFKTAYREQCSISVIMFDVDHFKKI 521 Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND++GH VGD IA ++ L V V R GGEEF ++ Q A +A ++R+ Sbjct: 522 NDHYGHLVGDYCIAHVAGILKKHVTRASDIVARYGGEEFVVVLNNTNAQGALHVAEEIRR 581 Query: 202 IIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 + + G I +T+S G+A H + ++ ++ AD ALY AK++GRN++ Sbjct: 582 EVFTIPMQ-HDGMQIPMTVSGGVAAGIPHHYQGMAELLNLADNALYKAKQNGRNQIA 637 >gi|221369403|ref|YP_002520499.1| Diguanylate cyclase [Rhodobacter sphaeroides KD131] gi|221162455|gb|ACM03426.1| Diguanylate cyclase [Rhodobacter sphaeroides KD131] Length = 556 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 15/175 (8%) Query: 96 SYNRISQLSRI----------DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQI 142 S +R+++++R+ D L+GL N A + E+ +++ DID+FKQI Sbjct: 358 SRDRLAEITRLREAAEASARSDPLTGLGNRRALDRQFEAATEREGAIALALIDIDHFKQI 417 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH +GD+V+ + +L V R+GGEEF G L L + Sbjct: 418 NDRLGHAMGDRVLQRFAVELSAVLPEGARAFRIGGEEFLTLCPGQDTGAVVGLLEKLARR 477 Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 +E + G +T SAG+A R + + RAD LY AK+ GRN+++ Sbjct: 478 LETDP-PLRDGDLPRLTFSAGVAMRPGDGRSLGQLTARADARLYEAKRRGRNQIL 531 >gi|148554048|ref|YP_001261630.1| diguanylate cyclase [Sphingomonas wittichii RW1] gi|148499238|gb|ABQ67492.1| diguanylate cyclase [Sphingomonas wittichii RW1] Length = 415 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 26/174 (14%) Query: 97 YNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y R+ + D L+GLL+ +A + + N LS++ DID+FK +ND+ GH Sbjct: 247 YERLVERVGRDALTGLLDRGQLDAKGTAMLQAASRSNASLSLMMIDIDHFKSVNDSHGHV 306 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-------AAALGSSEQEAAILANDLRKI 202 VGD VI +++ + G + R GGEEFA A+ S+E+ +A+ Sbjct: 307 VGDGVIRTIAETIAAAKGEGAELFRYGGEEFALLCPLTLPDAVASAERIRVAVADSRHPE 366 Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E + +T+S GIA H +I +AD ALY AK +GRNR+ Sbjct: 367 LERA-----------MTVSIGIAAFPAHARSFWQLIEKADAALYQAKAAGRNRI 409 >gi|91203009|emb|CAJ72648.1| hypothetical protein kustd1903 [Candidatus Kuenenia stuttgartiensis] Length = 516 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 11/171 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+ ID L+ + NH F + L + +S+V FD+D+FK+ ND++GHP G Sbjct: 338 RLEKLANIDGLTDVYNHRYFQNFLETEIRRSLRKKTSVSLVLFDVDHFKKFNDSYGHPAG 397 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ L + + R GGEEF + ++ ++AA + LR++I S I I Sbjct: 398 DFILKELCKLVKKNLRDYDLIARYGGEEFILVLVETAAEDAAEITEKLREVIA-SHIFID 456 Query: 212 SGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259 +T S G+A + I AD+ALY +KK GRN++ ++ Sbjct: 457 DINEYKVTASFGVATMSPAKDEFKQGDFIDFADKALYESKKKGRNKITAYT 507 >gi|87120477|ref|ZP_01076371.1| putative two-component response regulator protein with GGDEF domain [Marinomonas sp. MED121] gi|86164120|gb|EAQ65391.1| putative two-component response regulator protein with GGDEF domain [Marinomonas sp. MED121] Length = 422 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 14/166 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 N I L+ +D L+GL N +S SY + ++ DID+FKQINDN+GH V Sbjct: 256 NTIRDLANLDALTGLYNRRFLMSEGESYYQNALAAQRPIHVLMLDIDHFKQINDNYGHLV 315 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDK++ S+ L F + V R GGEEF S+ +E +A L + N Sbjct: 316 GDKLLEGFSELLRHCFSDSL-VARFGGEEFCILNDQSTVEE---IAARLSVLNTNLMEQG 371 Query: 211 SSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I IT S G ++E C E + + AD LY+AK +GRN+V Sbjct: 372 FTSEKIKITYSGGVVSEVC--ENLEGAVKVADTRLYLAKNNGRNQV 415 >gi|120597466|ref|YP_962040.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|120557559|gb|ABM23486.1| diguanylate cyclase [Shewanella sp. W3-18-1] Length = 324 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 9/170 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L + ++ +LS+ D L+ L N + L YN+ S+V DID FK IND Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQLCLEHEFDLYARYNDIPSLVMIDIDNFKYIND 203 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GDKVI ++ L GR GGEEFA +S ++A LR+ I Sbjct: 204 TYGHVAGDKVIQHIAHILSQSLRETDCAGRYGGEEFAVVMPKTSGEDALHFTERLREKIA 263 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 S I + I +T+S G+ E H S+ I +D+ALY AK+ GRN Sbjct: 264 ESTI-VYESLKIKVTVSLGVCEIGKHISSSSSWISCSDKALYEAKQKGRN 312 >gi|311108804|ref|YP_003981657.1| diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310763493|gb|ADP18942.1| diguanylate cyclase, GGDEF domain protein 17 [Achromobacter xylosoxidans A8] Length = 413 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 26/177 (14%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL A L ++ D+D FK ND GH VGD+V+ ++ QL V Sbjct: 231 DELTGLPGRRALNERLQRMGRVYTLAMADVDNFKAFNDTHGHDVGDQVLRMVAAQLRRVP 290 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS----------- 215 G R GGEEF G + E+ +R+ IE Q+ + P+ Sbjct: 291 GGGQAY-RYGGEEFTLVFPGKTAAESMPHLESVRRSIEAYQMRLRDKPARPKADQIGLRR 349 Query: 216 -----------IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +T+S G+AER + P ++I ADQALY AK GRN+V +S Sbjct: 350 RSGRDARSARPLRVTVSIGVAERSEALRAP-ESVIKAADQALYKAKDEGRNQVRAYS 405 >gi|262168543|ref|ZP_06036239.1| sensory box/GGDEF family protein [Vibrio cholerae RC27] gi|262023072|gb|EEY41777.1| sensory box/GGDEF family protein [Vibrio cholerae RC27] Length = 568 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ + DID+FK+IND FGH Sbjct: 399 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 458 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 459 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 511 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 512 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 563 >gi|237747413|ref|ZP_04577893.1| GGDEF domain-containing protein [Oxalobacter formigenes HOxBLS] gi|229378764|gb|EEO28855.1| GGDEF domain-containing protein [Oxalobacter formigenes HOxBLS] Length = 536 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 17/173 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 RI + D L+GL N F + + ++S+++ D+D FK IND FGH VGD + Sbjct: 362 QRILLSANTDALTGLYNRRFFYEKIEENRWKPQISLLYVDMDNFKLINDRFGHQVGDDAL 421 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRKIIENSQI-- 208 +SD L M + R+GG+EF A LG E++AA + L+K+ + + Sbjct: 422 KIVSDNLKTCCPEDM-ICRIGGDEFLIAVLGKCSETGLEEKAAWILRRLQKVFDGTDAMG 480 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +S+ I T+ + PI +I ++D AL AK+SG+ R +SD+ Sbjct: 481 ELSASIGIAYTLDQSL-------PIDQLIKQSDIALLSAKRSGKARYCLYSDM 526 >gi|114778330|ref|ZP_01453189.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like [Mariprofundus ferrooxydans PV-1] gi|114551432|gb|EAU53988.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like [Mariprofundus ferrooxydans PV-1] Length = 615 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N F ++ + + S++ D+D+FK ND++GH +GD+V+ Sbjct: 449 ARTDVLTGLNNRRYFFELAELELARAKRHGNQFSLLMLDVDHFKLFNDSYGHHIGDRVLQ 508 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS- 215 LS+ + GR+GGEEFA + A +A LR I + + + + Sbjct: 509 KLSEVCMHTLREIDLSGRIGGEEFAIMLPETRGDRAMEVAERLRLAIAGAPVLLEQQSTF 568 Query: 216 IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +H T+S G+ + ++ RAD ALY AK +GRN+ VC D Sbjct: 569 VHFTVSIGVTSLVAAGRQVDDLLKRADDALYAAKNAGRNQ-VCKKD 613 >gi|329924628|ref|ZP_08279643.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] gi|328940462|gb|EGG36784.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] Length = 331 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 12/167 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N F L YN LS+ DID+FK++ND +GH GD+V Sbjct: 163 ELSNTDKLTGLKNRRFFQEKLEEQLMQYNHNRIPLSLFIIDIDHFKRVNDTWGHGYGDEV 222 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L V R GGEEF + ++A A LR+ +++ S Sbjct: 223 LFNVATILKTHAIEGETVARYGGEEFVMILPETDAEKAKAGAERLRRAVQDFSWKTGS-- 280 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +TIS GI +T++ +AD+ALY +K++GRN+V + D+ Sbjct: 281 ---MTISIGIITATPDANEATLLQKADEALYASKQNGRNQVTHYEDL 324 >gi|312142885|ref|YP_003994331.1| diguanylate cyclase and metal dependent phosphohydrolase [Halanaerobium sp. 'sapolanicus'] gi|311903536|gb|ADQ13977.1| diguanylate cyclase and metal dependent phosphohydrolase [Halanaerobium sp. 'sapolanicus'] Length = 363 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 95/172 (55%), Gaps = 14/172 (8%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHP 149 +I++ +I+ L+ D L+GL N FIS + ++K + I+ DI+ K IN+++G Sbjct: 18 YINFKKITHLNTHDNLTGLYNRKCFISEMKKLDKKENLPIGIIMTDINGLKLINNSYGQQ 77 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD++I ++ L + +GR GG+EF + + +QE + +++ + IN Sbjct: 78 IGDQIIIKSAELLKTTLKSNDIIGRWGGDEFIIIMINTHKQEVELYTREIKNL-----IN 132 Query: 210 ISSGPSIHITISAGIAER-CHKEPISTIIYRADQALY----VAKKSGRNRVV 256 I I I++SAG A + +E I +I +A+QAL+ +KS +N++V Sbjct: 133 IEPQSKIDISLSAGSALKITAEEKILNLIQQAEQALFTDQLTKEKSSKNKIV 184 >gi|285017545|ref|YP_003375256.1| two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] gi|283472763|emb|CBA15268.1| hypothetical two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 1008 Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 12/160 (7%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +A + + + L + DIDYFK+IND +GH +GD+V+ + Sbjct: 850 DALTGLPNRHTAEPYLTAALEQAMAASTTLCVALLDIDYFKKINDAYGHEIGDEVLRRVG 909 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D L V G F R GGEEF G ++A + LR + G + T Sbjct: 910 DLLRVALGDNAFAARHGGEEFLLVLPGLDREQALACLDTLRGRFAALTLQDEDGCVVQFT 969 Query: 220 ISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 S G A C + T ++ +AD+ LY AK GR+RV+ Sbjct: 970 ASIGFA--CLSPTLRTRRDLLLQADKHLYQAKHEGRDRVI 1007 >gi|260219806|emb|CBA26707.1| hypothetical protein Csp_H39940 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 292 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 10/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143 + L + ++ L+ D L+GL N FI + +++ D+D+FK+IN Sbjct: 108 EALVVQQQELAFLADHDALTGLYNRREFIRLAQMELLRATRVPCETAVIMVDLDFFKKIN 167 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GHP GD V+ + L + RLGGEEF + + A +A LR + Sbjct: 168 DRYGHPGGDAVLKATAACLNQALRATDTLARLGGEEFIVLLPATGREGALQVATKLRDAV 227 Query: 204 ENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255 N+ I G I +T S G++ ++ + I AD+ALYVAK+ GR+RV Sbjct: 228 RNTAIEFDGG-LIAVTASFGVSSVPAQKHGTVDAIYAAADRALYVAKQLGRDRV 280 >gi|257485508|ref|ZP_05639549.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320329233|gb|EFW85230.1| sensory box protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330987413|gb|EGH85516.1| sensory box protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010684|gb|EGH90740.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 729 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 29/214 (13%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115 +G +L ++ + ++ T LL+ + + +L + ++ L+ D L+GL N Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNRALL 301 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L Sbjct: 302 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361 Query: 172 VGRLGGEEFAAAALG------SSEQEAAILANDLRKIIENSQI----NISSGPSIHITI- 220 V RLGG+EF G Q+ +LA++LR+++ + PSI I + Sbjct: 362 VARLGGDEFVVLICGLDGTRDEVTQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 421 Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G+A + ++ RAD ALY AK SGRN Sbjct: 422 PDDGLAP-------ADLLKRADIALYRAKDSGRN 448 >gi|225017148|ref|ZP_03706340.1| hypothetical protein CLOSTMETH_01073 [Clostridium methylpentosum DSM 5476] gi|224950067|gb|EEG31276.1| hypothetical protein CLOSTMETH_01073 [Clostridium methylpentosum DSM 5476] Length = 383 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 13/168 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHPVGDKVI 155 S +D ++GL N F + +Y K SI+ FDID FK ND+FGH GD+ + Sbjct: 203 SNLDEMTGLPNRRYF-NDFIAYKFKESARKSLPFSILIFDIDDFKYYNDSFGHLAGDECL 261 Query: 156 AFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + ++ + +F+ R GGEEF A G + A A +L + I + + G Sbjct: 262 SRIGRVMLDYMIQQDLFIARFGGEEFIAVLAGEDARRAQEHAENLIQQIRKCPMPAAFGE 321 Query: 215 SIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S H+T+S G A+ H +I AD ALY AK +G++R+ +S Sbjct: 322 STHVTMSVGFAQMEHIGETASFHEVIKNADVALYRAKANGKDRIERYS 369 >gi|49186952|ref|YP_030204.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] gi|167633559|ref|ZP_02391883.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|177652686|ref|ZP_02935102.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|218905180|ref|YP_002453014.1| putative sensory box/GGDEF family protein [Bacillus cereus AH820] gi|49180879|gb|AAT56255.1| sensory box/GGDEF family protein, putative [Bacillus anthracis str. Sterne] gi|167530965|gb|EDR93652.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|172082021|gb|EDT67089.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|218537493|gb|ACK89891.1| putative sensory box/GGDEF family protein [Bacillus cereus AH820] Length = 431 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + NE ++++ FDID FK +ND +GH Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 321 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 322 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 380 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 381 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 426 >gi|77360112|ref|YP_339687.1| GGDEF protein [Pseudoalteromonas haloplanktis TAC125] gi|76875023|emb|CAI86244.1| conserved protein of unknown function ; putative GGDEF family protein [Pseudoalteromonas haloplanktis TAC125] Length = 962 Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 7/155 (4%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N AF S L + N+ L+I DID+FK++ND + H VGDKVI ++ Sbjct: 804 DQLTDMPNRRAFDSWLAANFATYKQQNKILAIAIMDIDHFKRVNDGWSHIVGDKVICEIA 863 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + EA ++ LR+ I N+ ++ + +T Sbjct: 864 KILKSHCEGEQQVARWGGEEFTLVFPNKTAAEAKLMCELLREEIANNDFSVIAAGLHQVT 923 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 S G+++ + + ++ ADQALY AK GRNR Sbjct: 924 ASFGVSDSNNIDDYDRLLSGADQALYKAKNGGRNR 958 >gi|158318760|ref|YP_001511268.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EAN1pec] gi|158114165|gb|ABW16362.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EAN1pec] Length = 1327 Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 8/163 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +R+ +R D L+GL N S F L S ++++ D+D FK IND+ GH GD Sbjct: 459 DRLGHQARHDLLTGLANRSGFGDRLASALAVSSESSCAVLYLDLDGFKPINDSLGHAAGD 518 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+A + +L + RLGG+EFA S A+++A+ R I ++ I Sbjct: 519 RVLAIIGARLAALLREGDLASRLGGDEFAMLLRDSDLATASLVAD--RVIRAVAEKIILE 576 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254 G + + S GIA R + +I+ AD A+Y AK+ G +R Sbjct: 577 GECVQVGASVGIAMGRPGRSRADELIHAADTAMYAAKRDGGSR 619 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 11/162 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +AF L + E +++F D+D FK +ND FGH VGD V+ + Sbjct: 1167 DPLTGLPNRAAFDRHLAAVAEHEQAGTSFAVLFIDLDNFKPVNDRFGHAVGDDVLRVIGA 1226 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHIT 219 ++ V RLGG+EFA E + ++ +I+E S+ I+ +G +I + Sbjct: 1227 RIGAASRKTDMVSRLGGDEFAVLV---DEADDDLVCAISARILETSRQPIALAGTTIALG 1283 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + GIA R + T + AD A+Y AK++GR+R F+D Sbjct: 1284 ATIGIALCRAGIDDPETALRNADNAMYRAKRAGRDRYALFTD 1325 >gi|269139399|ref|YP_003296100.1| hypothetical protein ETAE_2054 [Edwardsiella tarda EIB202] gi|267985060|gb|ACY84889.1| hypothetical protein ETAE_2054 [Edwardsiella tarda EIB202] gi|304559295|gb|ADM41959.1| hypothetical protein ETAF_1853 [Edwardsiella tarda FL6-60] Length = 351 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 3/156 (1%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 QL++ + GL I L I DID FKQIND +GH GD+V+ ++ Sbjct: 198 QLTQTNNRQGLQQQ---ILRLEHSRSACCIAMIDIDNFKQINDRYGHLCGDRVLTAVAAI 254 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 ++ R GGEEF G + + A +R+ I ++ I + I +T S Sbjct: 255 ASQTLQPRDYMARFGGEEFVILFPGKTLERANARCEQIRQAICSTPIYLCHNQQIRVTAS 314 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G++ ++ + I RAD ALY AK+ G+NRV C Sbjct: 315 FGLSYFDGRDSLQQAIARADGALYRAKRRGKNRVEC 350 >gi|288940706|ref|YP_003442946.1| GAF sensor-containing diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288896078|gb|ADC61914.1| diguanylate cyclase with GAF sensor [Allochromatium vinosum DSM 180] Length = 364 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 11/181 (6%) Query: 78 ISLLLGYISGSILKELFISY-NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKL 129 I LL + +I L S+ NR QL R D L+GL N A +++ ++ L Sbjct: 170 IEGLLALAAPAIQNALRFSHVNR--QLER-DPLTGLGNRRALSVQGEQWLADSVRHHHPL 226 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D FK +ND +GHPVGD+V+ +++ L+ V T RLGG+EF + Sbjct: 227 SMLALDLDRFKAVNDTYGHPVGDRVLCRVAETLMAVTRTADLCVRLGGDEFVVLLPETGL 286 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 + A A +R + I SG I I++S G+A + + ++AD ALY AK+ Sbjct: 287 RAALDCAERIRSALAQHCITTESGSCIAISVSIGVATLQPDMSLDQLYHQADAALYAAKQ 346 Query: 250 S 250 + Sbjct: 347 A 347 >gi|256828463|ref|YP_003157191.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gi|256577639|gb|ACU88775.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] Length = 280 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 12/163 (7%) Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L +D L+GL N F ++ + L++ D+D FK +ND +GHP GD VI Sbjct: 83 LQGLDPLTGLANRRGFDQTMVMEVERSSRFKTPLTLCIMDLDNFKAVNDTYGHPCGDDVI 142 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L+ R+GGEEFA G+ A L ++ II+ ++I Sbjct: 143 KTVASILLNEMRMIDTAARIGGEEFALLLPGTGLARALKLLQRIQSIIQATRITCGDA-R 201 Query: 216 IHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+A + +P+ ++ AD+ALY AK++G+NR+ Sbjct: 202 LTMTMSMGVASYRGKLTPDPVK-LLAEADKALYRAKRTGKNRI 243 >gi|167562304|ref|ZP_02355220.1| GGDEF domain protein [Burkholderia oklahomensis EO147] Length = 454 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 9/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L+EL + ++ L+ D L+G N FI + + S++ D+D FK I Sbjct: 279 LQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDGTAFSLLALDLDNFKTI 338 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 NDN+GH VGD V+ Q + + R+GGEEF A+ +A +R Sbjct: 339 NDNYGHQVGDVVLRNFVRQCLTAIRPYDHIARVGGEEFMVLLPRMLADAASGIAERVRTS 398 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I N+ I G +T+S G+++ + + I+ AD+ LY AK GRNRVV Sbjct: 399 IANASFGI-DGKHTPVTVSIGVSQYGRDGDTVDEILSVADKLLYRAKHEGRNRVVA 453 >gi|126463805|ref|YP_001044918.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029] gi|126105616|gb|ABN78146.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029] Length = 562 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 15/175 (8%) Query: 96 SYNRISQLSRI----------DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQI 142 S +R+++++R+ D L+GL N A + E+ +++ DID+FKQI Sbjct: 364 SRDRLAEITRLREAAEASARSDPLTGLGNRRALDRQFEAATEREGAIALALIDIDHFKQI 423 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH +GD+V+ + +L V R+GGEEF G L L + Sbjct: 424 NDRLGHAMGDRVLQRFAVELSAVLPEGARAFRIGGEEFLTLCPGQDTGAVVDLLEKLARR 483 Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 +E + + G +T SAG+A R + + RAD LY AK+ GRN+++ Sbjct: 484 LE-ADPPLRDGDLPRLTFSAGVAMRPGDGRSLGQLTARADARLYEAKRRGRNQIL 537 >gi|289670563|ref|ZP_06491638.1| putative sensor protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 793 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 10/172 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 +EL + +S + D L+GLLN + +++L L++V D+D+FK +N Sbjct: 612 RELEAARAELSLKATHDELTGLLNRAGILAALREMLLHAARSGRPLAVVLIDLDHFKLVN 671 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD V+A + ++ + +GR GGEE A G + L R I Sbjct: 672 DQHGHLAGDAVLAGVGRRVDTLVRGDDRIGRYGGEELLALLPGLNLDATHRLEALHRDIC 731 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I+ G +H+T S G+A E + ++ RAD ALY AK+SGRNR+ Sbjct: 732 GDYPID---GGWLHVTCSIGVAWFQPGETLEQLLARADAALYSAKRSGRNRI 780 >gi|222033694|emb|CAP76435.1| Cellulose synthesis regulatory protein [Escherichia coli LF82] Length = 564 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132 LL Y+ ++ +++ + + + D L+ L N A ++ S++ Sbjct: 374 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCQTHQHPFSVI 433 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ +A Sbjct: 434 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 493 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250 A +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+AK++ Sbjct: 494 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 553 Query: 251 GRNRV 255 GRNRV Sbjct: 554 GRNRV 558 >gi|16331713|ref|NP_442441.1| PleD-like-protein [Synechocystis sp. PCC 6803] gi|1001267|dbj|BAA10511.1| slr0829 [Synechocystis sp. PCC 6803] Length = 829 Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 11/173 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++SQL ID L+ + N F L +S++ FDID FK ND +GHP G Sbjct: 648 KLSQLIDIDGLTKIANRRCFNVRIKQEWRRLSRAQVPISLIMFDIDCFKNYNDRYGHPEG 707 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D + ++ P V R GGEEFA + + A ++A + + I I Sbjct: 708 DLCLIRVAQAARKAASRPADLVARFGGEEFAVLLPETDTKGAIMVAEKIIQAISQLAIAH 767 Query: 211 SSGP-SIHITISAGIAERC-HKEPIS-TIIYRADQALYVAKKSGRNRVVCFSD 260 + P S ITIS GI + KE IS T+I +AD ALY AK+ GRN+ V +++ Sbjct: 768 EASPISGQITISLGIGTQFPSKELISRTLIKQADMALYEAKRRGRNQYVVWTE 820 >gi|30264120|ref|NP_846497.1| sensory box/GGDEF family protein, putative [Bacillus anthracis str. Ames] gi|42783158|ref|NP_980405.1| sensory box/GGDEF family protein, putative [Bacillus cereus ATCC 10987] gi|47529556|ref|YP_020905.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|65321436|ref|ZP_00394395.1| COG2199: FOG: GGDEF domain [Bacillus anthracis str. A2012] gi|165871160|ref|ZP_02215810.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167639495|ref|ZP_02397766.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|170687199|ref|ZP_02878417.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|170705667|ref|ZP_02896130.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|190565880|ref|ZP_03018799.1| putative sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|196034843|ref|ZP_03102250.1| putative sensory box/GGDEF family protein [Bacillus cereus W] gi|206977366|ref|ZP_03238262.1| putative sensory box/GGDEF family protein [Bacillus cereus H3081.97] gi|217961536|ref|YP_002340106.1| putative sensory box/GGDEF family protein [Bacillus cereus AH187] gi|222097494|ref|YP_002531551.1| sensory box/ggdef family protein, putative [Bacillus cereus Q1] gi|227816822|ref|YP_002816831.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|228916684|ref|ZP_04080249.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929093|ref|ZP_04092120.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935364|ref|ZP_04098184.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229123567|ref|ZP_04252762.1| Sensory box/GGDEF family protein [Bacillus cereus 95/8201] gi|229140780|ref|ZP_04269325.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST26] gi|229198168|ref|ZP_04324877.1| Sensory box/GGDEF family protein [Bacillus cereus m1293] gi|229604454|ref|YP_002868344.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0248] gi|254683812|ref|ZP_05147672.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. CNEVA-9066] gi|254721647|ref|ZP_05183436.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A1055] gi|254736158|ref|ZP_05193864.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. Western North America USA6153] gi|254744048|ref|ZP_05201731.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B] gi|254754173|ref|ZP_05206208.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. Vollum] gi|254758137|ref|ZP_05210164.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. Australia 94] gi|301055541|ref|YP_003793752.1| putative sensory box/GGDEF family protein [Bacillus anthracis CI] gi|30258765|gb|AAP27983.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|42739086|gb|AAS43013.1| sensory box/GGDEF family protein, putative [Bacillus cereus ATCC 10987] gi|47504704|gb|AAT33380.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164713079|gb|EDR18606.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167512554|gb|EDR87929.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|170129207|gb|EDS98071.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|170668816|gb|EDT19561.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|190562799|gb|EDV16765.1| putative sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|195992382|gb|EDX56343.1| putative sensory box/GGDEF family protein [Bacillus cereus W] gi|206744357|gb|EDZ55768.1| putative sensory box/GGDEF family protein [Bacillus cereus H3081.97] gi|217066991|gb|ACJ81241.1| putative sensory box/GGDEF family protein [Bacillus cereus AH187] gi|221241552|gb|ACM14262.1| sensory box/GGDEF family protein, putative [Bacillus cereus Q1] gi|227006187|gb|ACP15930.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|228585328|gb|EEK43437.1| Sensory box/GGDEF family protein [Bacillus cereus m1293] gi|228642570|gb|EEK98856.1| Sensory box/GGDEF family protein [Bacillus cereus BDRD-ST26] gi|228659702|gb|EEL15347.1| Sensory box/GGDEF family protein [Bacillus cereus 95/8201] gi|228824292|gb|EEM70104.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830383|gb|EEM75993.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842871|gb|EEM87954.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268862|gb|ACQ50499.1| putative sensory box/GGDEF family protein [Bacillus anthracis str. A0248] gi|300377710|gb|ADK06614.1| possible sensory box/GGDEF family protein [Bacillus cereus biovar anthracis str. CI] gi|324327950|gb|ADY23210.1| putative sensory box/GGDEF family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 430 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + NE ++++ FDID FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 321 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 425 >gi|241764615|ref|ZP_04762630.1| diguanylate cyclase [Acidovorax delafieldii 2AN] gi|241365936|gb|EER60566.1| diguanylate cyclase [Acidovorax delafieldii 2AN] Length = 398 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 7/156 (4%) Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GLLN + L +Y ++ DID+FK IND +GH VGD V+ +++ Sbjct: 226 DPLTGLLNRRGLMDGLDAYFRARPAASAHLLIVDIDHFKSINDTWGHKVGDLVLCRVAEV 285 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITI 220 L RLGGEEF A + A LA +R+ IE+ Q+ S + T Sbjct: 286 LRSTARRGDLTCRLGGEEFVVVAFDTDSIGATQLAERMREAIEDRQMQDSGLTEPVRCTA 345 Query: 221 SAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255 + G++E +++AD ALY K SGRN V Sbjct: 346 TIGVSEGFASAAAFDETLHQADAALYRGKMSGRNCV 381 >gi|218679410|ref|ZP_03527307.1| hypothetical protein RetlC8_11216 [Rhizobium etli CIAT 894] Length = 238 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 2/141 (1%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + LS + FDID+FK++ND GH GD+V+ ++ GR+GGEEFA Sbjct: 38 HQHDLSCIVFDIDHFKRVNDTHGHAAGDEVLKAVAAICKTTLRVGDLFGRIGGEEFAVVL 97 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243 + A +A LR I + I G +H+T S G + + I T++ +AD A Sbjct: 98 PHVDREGAVAVAEKLRAAIASQPIRGDHGV-LHVTASLGSSTLSIVSKEIETLLAQADAA 156 Query: 244 LYVAKKSGRNRVVCFSDIENN 264 +Y AK GRNR V +S I + Sbjct: 157 MYQAKHGGRNRCVSWSSIHAD 177 >gi|152982370|ref|YP_001353570.1| hypothetical protein mma_1880 [Janthinobacterium sp. Marseille] gi|151282447|gb|ABR90857.1| Hypothetical protein mma_1880 [Janthinobacterium sp. Marseille] Length = 389 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 78/165 (47%), Gaps = 17/165 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ +D L+G LN A++ G Y + + ++ D+DYFKQIND GH VGD Sbjct: 220 LERLATLDGLTGALNRRAWLLQSGIELAGSVRYRQPIGLLLLDLDYFKQINDTHGHAVGD 279 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + L V T R GGEEF L A++ A D R Q Sbjct: 280 RALQLFVTGLRTVSRTGDLFCRYGGEEF--CVLLKCADLASVTAYDQRM----RQWLAQH 333 Query: 213 GPS---IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 P ++ SAGI R H + I T++ RAD ALY AK GR Sbjct: 334 SPQELGFKLSYSAGITMREHDGDTIDTMLQRADVALYEAKSQGRG 378 >gi|145300858|ref|YP_001143699.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142853630|gb|ABO91951.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 471 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 10/177 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148 EL + R+ L+ D ++G+LN AF+ L + + +++ FDID FK IND+FGH Sbjct: 289 ELVRANARLESLANTDSMTGILNRRAFLPLLAERLASGQASALLLFDIDRFKGINDHFGH 348 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+VIA L++++ V + R+GGEEF + + A+ + + + ++ Sbjct: 349 GVGDEVIAALAERVEAVLPSDALFARIGGEEFCISLPMADMAALQGWASRIGREVSAQKL 408 Query: 209 NISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRN--RVVCFSD 260 S+G + ++IS G + E + ++ +AD+ +Y +K GRN + C+ + Sbjct: 409 QTSAG-ELGLSISTGAVWVPSGVRAES-TGLLQQADKLMYGSKSRGRNTWQAACYEE 463 >gi|89098948|ref|ZP_01171828.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89086352|gb|EAR65473.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 574 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 25/184 (13%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFG 147 +Y R + S L+ L N+ F LG LS++ DID+FK +ND FG Sbjct: 393 NYERTKENSERCALTKLYNYRYFDVLLGEEFIRMESGKRSVLSLIILDIDHFKSVNDTFG 452 Query: 148 HPVGDKVIAFLSDQLVVV---FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 H G++++ L+++L ++ +GT V R GGEEF + +QEA LA +R I Sbjct: 453 HQSGNEILIELAERLSLLTEPYGT---VARYGGEEFVVLLPDAEKQEALELAEVIRLAIA 509 Query: 205 NSQINIS-------SGPSIHITISAGIAERC--HKEPISTIIYRADQALYV-AKKSGRNR 254 I+ S S+ IT S G+A +P++ +I AD+ALYV AK++GRNR Sbjct: 510 TQPFTITQHMDGDGSRLSVSITASIGVASAPVDADDPLA-LIRHADRALYVGAKRAGRNR 568 Query: 255 VVCF 258 V + Sbjct: 569 VAEY 572 >gi|116053637|ref|YP_793964.1| GGDEF domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115588858|gb|ABJ14873.1| putative GGDEF domain protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 671 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + D L+GL N +A L + L + DID+FK+IND+FGH GDKV Sbjct: 509 QKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKV 568 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ +L F+ R GGEEF +S + L LR I + P Sbjct: 569 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEP 628 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT SAGI E + RADQALY AK++GR+R+ Sbjct: 629 -LSITCSAGITAFEGNEAGEVVFERADQALYRAKRAGRDRL 668 >gi|47565926|ref|ZP_00236965.1| sensory box/GGDEF family protein [Bacillus cereus G9241] gi|47557206|gb|EAL15535.1| sensory box/GGDEF family protein [Bacillus cereus G9241] Length = 430 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + NE ++++ FDID FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 425 >gi|317407207|gb|EFV87193.1| hypothetical protein HMPREF0005_05644 [Achromobacter xylosoxidans C54] Length = 587 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 9/163 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ D L+GLLN AF S L + L+ + FDID FK IND GH GD+ + Sbjct: 420 MAETDFLTGLLNRRAFESRLEQALAQWRGTDAVLAFILFDIDDFKGINDTHGHASGDEAL 479 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ + V R+GGEEFA + A A +R+ I +++ G Sbjct: 480 KTVAGLCRQTWRQADVVARVGGEEFAVLCHVGAADHAVQAAERMRRRIAQARVTAQDGAV 539 Query: 216 IHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256 +T S G+A + E + RAD+ LY AK G+NRVV Sbjct: 540 FTLTASFGVAYASWRNAEAADALFRRADELLYRAKMDGKNRVV 582 >gi|194472518|ref|ZP_03078502.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358613|ref|ZP_02657969.2| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194458882|gb|EDX47721.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332962|gb|EDZ19726.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 304 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 126/276 (45%), Gaps = 22/276 (7%) Query: 8 FLSIWLCH-EKNLESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYI-GLTPF------ 58 F IW H + + F + S+ +FI ++ F ANI F + L P Sbjct: 28 FGGIWAAHIALKYPALGHYDFSFLLISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWL 87 Query: 59 ----YGLEYILVENLSLVIISITISLLLGY--ISGSILKELFISYNRISQLSRIDCLSGL 112 GL + + L +V I+I + Y + ++ +L ++ LS +D L+GL Sbjct: 88 NGNEQGLRILYLLALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGL 147 Query: 113 LNHSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 N + L + + ++ DID+FK ND++GH +GD+ + +S + + Sbjct: 148 YNRRGLQNRLDTLQVPGCHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRS 207 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAE 226 V R GGEEF + Q+A A +R+ + + +I S+ ++T+S GIA Sbjct: 208 RDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAP 267 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + I I +AD+ALY AK GRN ++ D+ Sbjct: 268 LTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 302 >gi|28898411|ref|NP_798016.1| putative GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|260876573|ref|ZP_05888928.1| response regulator [Vibrio parahaemolyticus AN-5034] gi|260895068|ref|ZP_05903564.1| response regulator [Vibrio parahaemolyticus Peru-466] gi|260900922|ref|ZP_05909317.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|28806628|dbj|BAC59900.1| putative GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|308085962|gb|EFO35657.1| response regulator [Vibrio parahaemolyticus Peru-466] gi|308093590|gb|EFO43285.1| response regulator [Vibrio parahaemolyticus AN-5034] gi|308110696|gb|EFO48236.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] Length = 658 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 11/162 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157 +RID L+ LN +A I ++ S K + D+D FK IND +GHP GD V+ Sbjct: 483 ARIDSLTCALNRTAIIETIKSQTSKTHQEMRYVLALIDLDNFKAINDTYGHPTGDLVLKH 542 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + + V ++GRLGGEEF E + L K I QI + Sbjct: 543 VCQSIRVKLNKGEYIGRLGGEEFVLLLKNVDEIDVPFRVQSLHKTISEKQIKTERNEDLR 602 Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256 +T A +A P++ +Y DQALY AK++G+N VV Sbjct: 603 VT--ASLAYLSTSMPLTNFDELYSILDQALYQAKRNGKNAVV 642 >gi|325923977|ref|ZP_08185566.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] gi|325545560|gb|EGD16825.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] Length = 507 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 24/182 (13%) Query: 96 SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145 S NR+ L+ D L+G+ N ++L E LSI F D+D FK++ND+ Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALEHEFELASRQSWPLSIAFIDLDDFKRVNDS 376 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH +GD+V+ + L + T V R GGEEF L ++ +AA++ + R ++E Sbjct: 377 HGHLIGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTTADAALMVIE-RILVET 434 Query: 206 SQI---NISSGPSIHITISAGIAERCHK------EPISTIIYRADQALYVAKKSGRNRVV 256 ++ + SGP +HIT SAG+A H E I ++ AD LY +K GRNRV Sbjct: 435 ARTPMAQLQSGP-LHITFSAGLA--THGGGGRQFESIEHLLQAADSTLYRSKHRGRNRVT 491 Query: 257 CF 258 + Sbjct: 492 AY 493 >gi|192360831|ref|YP_001982921.1| EAL domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686996|gb|ACE84674.1| EAL domain protein [Cellvibrio japonicus Ueda107] Length = 798 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 11/167 (6%) Query: 96 SYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S +I L+ D L+GL N I+ + EKL I+F D+D FK +ND+ GH Sbjct: 351 SRAQIEFLAHHDALTGLPNRILLNDRLEMAITQVRRQGEKLGILFIDLDRFKNVNDSLGH 410 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+++ + +L T V RLGG+EF L + LA+ K+ E Q+ Sbjct: 411 GVGDQILQEAAKRLTANVRTGDTVSRLGGDEF--VVLFPRVRTEGNLADLTIKLREQLQL 468 Query: 209 NIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 + G S+HIT S GIA E +T+I AD A+Y+AK+ GRN Sbjct: 469 PYTVDGISLHITPSIGIAVYPDDGEDPNTLIKNADAAMYLAKEKGRN 515 >gi|163759328|ref|ZP_02166414.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Hoeflea phototrophica DFL-43] gi|162283732|gb|EDQ34017.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Hoeflea phototrophica DFL-43] Length = 457 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L + E+ LS++ DID+FK IND GH GD ++ + Sbjct: 295 DALTGLNNRRYLDTHLNTLVERSAKRDRPLSVLITDIDHFKSINDVHGHEGGDDILRDFA 354 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHI 218 ++ R GGEEF ++ AA +A LR + + ++ SG ++ + Sbjct: 355 RRVRGAVRGADLACRYGGEEFVVIMPDTTLDVAAQIAERLRDAVAAAPFKVAASGANVTL 414 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T S GIA E ++++ RADQALY AK SGRNRVV Sbjct: 415 TTSVGIAALEPSGEDSASLLRRADQALYQAKSSGRNRVV 453 >gi|152970346|ref|YP_001335455.1| hypothetical protein KPN_01794 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955195|gb|ABR77225.1| hypothetical protein KPN_01794 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 418 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 12/161 (7%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GLLN F + + ++ DID+FK IND GH GD+V+ LS L Sbjct: 256 DPLTGLLNRREFHRLVEAPTFIPRGYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILE 315 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + R GGEEF S A ILA +R+ + Q ++ +T+S G Sbjct: 316 TSVDREDKIYRWGGEEFLLFLPHSPIGRALILAEGIRQAVSEYQ-------TLSVTVSIG 368 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCFSDIE 262 +AE E + + R D+ALY AK GRNRV + F ++E Sbjct: 369 VAEHHDGETVDQLFSRVDKALYAAKNDGRNRVSRMPFENVE 409 >gi|90411738|ref|ZP_01219747.1| hypothetical protein P3TCK_17832 [Photobacterium profundum 3TCK] gi|90327300|gb|EAS43664.1| hypothetical protein P3TCK_17832 [Photobacterium profundum 3TCK] Length = 395 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 16/208 (7%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115 T +Y E L++ + ++L++ + S L L R+ + + +D L+G+ N Sbjct: 168 TDYYAGRLFAPEYLAIYWLQSVLALMVIWSQVSKLHMLM----RLYRQAILDPLTGIYNR 223 Query: 116 SAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVGDKVIA-FLSDQLVVVF 166 + LG N E S++ FDID FK+IND +GH VGDKV+ F S + Sbjct: 224 RMLLQ-LGKKNMLECELKGEPFSVLLFDIDKFKRINDTWGHSVGDKVLTGFTSFVQSKIR 282 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA 225 T +F GR GGEEF A ++N + I + ++ I+ S+ IT GI+ Sbjct: 283 KTDLF-GRYGGEEFVLFLPDCPPDTAIKISNRMLIAIRDLKLPINIDNQSLSITTCIGIS 341 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRN 253 + +++++ RAD ALY K SGR+ Sbjct: 342 TYSENDTLASMLERADLALYKCKHSGRD 369 >gi|328468977|gb|EGF39937.1| putative GGDEF family protein [Vibrio parahaemolyticus 10329] Length = 658 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 11/162 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157 +RID L+ LN +A I ++ S K + D+D FK IND +GHP GD V+ Sbjct: 483 ARIDSLTCALNRTAIIETIKSQTSKTHQEMRYVLALIDLDNFKAINDTYGHPTGDLVLKH 542 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + + V ++GRLGGEEF E + L K I QI + Sbjct: 543 VCQSIRVKLNKGEYIGRLGGEEFVLLLKNVDEIDVPFRVQSLHKTISEKQIKTERNEDLR 602 Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256 +T A +A P++ +Y DQALY AK++G+N VV Sbjct: 603 VT--ASLAYLSTSMPLTNFDELYSILDQALYQAKRNGKNAVV 642 >gi|311696110|gb|ADP98983.1| two-component response regulator [marine bacterium HP15] Length = 537 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 11/155 (7%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + L DIDYFK++ND FGHP+GD+V+ LS Sbjct: 379 DSLTGLFNHTHTLHLLDQEIVRARQKEQPLCFAMIDIDYFKKVNDTFGHPIGDRVLRSLS 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 L +GR GGEEFA + +A + N++R+ S++ +G ++ Sbjct: 439 MFLKQRLRKTDHIGRYGGEEFAIILPNTRPSDARNVLNEIRERF--SELQQPAGDREFNV 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 T S GIA + RAD+ALY +K+ GRN Sbjct: 497 TFSCGIAA-WDDNTSQALCERADRALYSSKELGRN 530 >gi|288957137|ref|YP_003447478.1| oxygen sensor diguanylate cyclase/c-di-GMP phosphodiesterase [Azospirillum sp. B510] gi|288909445|dbj|BAI70934.1| oxygen sensor diguanylate cyclase/c-di-GMP phosphodiesterase [Azospirillum sp. B510] Length = 750 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 100/188 (53%), Gaps = 19/188 (10%) Query: 93 LFISYNR----ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQ 141 L I ++R I++L+ D L+GL N +A ++ G + ++++F DID FK Sbjct: 287 LAIEHDRARAEINRLAYFDTLTGLPNRQLLADRATAALALAGRTRQSVTVIFLDIDRFKT 346 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND+ GH VGD+++ ++ +L +F + RLGG+EF A G A++LA + Sbjct: 347 VNDSLGHAVGDRLLVEVTARLRPLFIEGDTLARLGGDEFVALLPGCDAAHASLLAE---R 403 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCF 258 ++ + ++ + +T +A I H + T++ +AD A+Y AK++GRNR F Sbjct: 404 VLAALSVPMTVA-DLTLTPTASIGIAVHPDDGLDFDTLLRQADAAMYRAKQAGRNRCHFF 462 Query: 259 -SDIENNT 265 SDI Sbjct: 463 RSDINEQA 470 >gi|227327722|ref|ZP_03831746.1| hypothetical protein PcarcW_10466 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 552 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 80/163 (49%), Gaps = 10/163 (6%) Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D ++ LLN S L + + +++ DID FK+IND GH VGD VI +LS + Sbjct: 394 DPMTELLNRRGLDSVLRYWQMGQKSFAVIALDIDRFKRINDTHGHDVGDNVIRYLSQLIR 453 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + R GGEEF +S A +A LR+ ++ S I + +ITIS G Sbjct: 454 TSSRDADILCRSGGEEFLILLPETSLDVALSIAERLRQRVQESTIPVVG----NITISLG 509 Query: 224 IA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +A PI AD+ALY AK+ GRNRVV S E Sbjct: 510 VALWEPGVSDMPIDRTFKLADEALYQAKQEGRNRVVSASGSEQ 552 >gi|34498916|ref|NP_903131.1| hypothetical protein CV_3461 [Chromobacterium violaceum ATCC 12472] gi|34332886|gb|AAQ61122.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 420 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 8/179 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNE---KLSIVFFDIDYFKQI 142 ++EL + S + D L+G N F +G LSI D+D FKQ+ Sbjct: 241 IRELETALEAASAKVKEDQLTGAYNRRGLAEYFQREIGRAERTAAPLSIALIDVDNFKQL 300 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD + +L D + V R GGEEF + E EA L++ Sbjct: 301 NDRYGHLAGDDALKYLVDTIKHSLRPADIVARFGGEEFVILMPDTPETEAVQTVQRLQRE 360 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + + +++ + IT SAG+A E S ++ RAD A+Y AK +G+NRV D+ Sbjct: 361 LTKT-FFLANNDKLLITFSAGVARWHLGEQESDVLERADHAMYQAKINGKNRVCSAEDM 418 >gi|21243537|ref|NP_643119.1| hypothetical protein XAC2810 [Xanthomonas axonopodis pv. citri str. 306] gi|21109102|gb|AAM37655.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 356 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 13/163 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N AF +L + E+ LS+ D+D+FK +ND GH GD V+ Sbjct: 200 TRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLR 259 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 LS L + R GGEEF ++ +A + LR+ + I ++ Sbjct: 260 ELSTLLRAHMAGAGTIARYGGEEFVLLLPNANLLQARVQCEYLRQSVAAMTI------AL 313 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +T+S G+A +E + +I RADQALY AK+ GR++VV Sbjct: 314 PVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE 356 >gi|121998140|ref|YP_001002927.1| diguanylate cyclase [Halorhodospira halophila SL1] gi|121589545|gb|ABM62125.1| diguanylate cyclase [Halorhodospira halophila SL1] Length = 412 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 111/237 (46%), Gaps = 42/237 (17%) Query: 47 NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106 +I F +T GLE L+ + SLV+ ++ + L + ++L+E +++ Sbjct: 190 HIGAFSALVTATVGLELSLMRHGSLVLPTLLAVVALHLLLFAVLQEAH-------RMAFR 242 Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--VV 164 D L+GL N A + + + +I DID+FK ND +GH +GD+V+ ++ + V Sbjct: 243 DGLTGLPNRRAMDTLTQGLSGRYTIAMMDIDHFKAFNDTYGHEIGDQVLRRVASNIGRVG 302 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG--PS------- 215 G P R GGEEF+ G S EA +R+ I ++ + S P+ Sbjct: 303 AGGRPF---RYGGEEFSVVFPGRSPDEAVGALEAVRQAIADTPFRLRSADRPADDKRGSR 359 Query: 216 ----------IHITISAGIAERCHKEPIST------IIYRADQALYVAKKSGRNRVV 256 ITIS G+A EP ST ++ ADQALY AKK GRNR+ Sbjct: 360 ERSGQRGEQETRITISIGVA-----EPESTSASADDVVQAADQALYRAKKGGRNRLA 411 >gi|104780910|ref|YP_607408.1| sensory box protein [Pseudomonas entomophila L48] gi|95109897|emb|CAK14602.1| putative sensory box protein [Pseudomonas entomophila L48] Length = 798 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 14/206 (6%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P GL ++ E + I +L GY++ + +L + LS D L+G+ N Sbjct: 595 PRAGLRWVRGEA-TPEIGDHGCTLWHGYLTD--ISDLKRVEEELRALSITDSLTGIHNRR 651 Query: 117 AFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F L + L+++ DID+FK+IND FGH VGD+V+ L ++ Sbjct: 652 YFQERLRIELDRAQRDGQGLAVIMLDIDHFKRINDEFGHAVGDRVLRSLCQRIGQRLRRT 711 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 RLGGEEF G+ ++A +LA +L + + + + +T S G+A Sbjct: 712 DVFCRLGGEEFMVLCPGNDAEQARLLALELWQGVRSVPVEGVG----RVTASFGVAGWRP 767 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 E ++ RAD +Y AK+ GR+RV Sbjct: 768 GEGADALLLRADAGVYAAKQGGRDRV 793 >gi|332561060|ref|ZP_08415378.1| diguanylate cyclase [Rhodobacter sphaeroides WS8N] gi|332274858|gb|EGJ20174.1| diguanylate cyclase [Rhodobacter sphaeroides WS8N] Length = 556 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 15/175 (8%) Query: 96 SYNRISQLSRI----------DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQI 142 S +R+++++R+ D L+GL N A + E+ +++ DID+FKQI Sbjct: 358 SRDRLAEITRLREAAEASARSDPLTGLGNRRALDRQFEAATEREGAIALALIDIDHFKQI 417 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH +GD+V+ + +L V R+GGEEF G L L + Sbjct: 418 NDRLGHAMGDRVLQRFAVELSAVLPEGARAFRIGGEEFLTLCPGQDTGAVVDLLEKLARR 477 Query: 203 IENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 +E + + G +T SAG+A R + + RAD LY AK+ GRN+++ Sbjct: 478 LE-ADPPLRDGDLPRLTFSAGVAMRPGDGRSLGQLTARADARLYEAKRRGRNQIL 531 >gi|300703753|ref|YP_003745355.1| diguanylate cyclase [Ralstonia solanacearum CFBP2957] gi|299071416|emb|CBJ42735.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum CFBP2957] Length = 527 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 20/190 (10%) Query: 84 YISGSILKELFISYNRIS--QLSRID------CLSGLLNHSAFISSL---GSYNEKLSIV 132 YI LK + R++ +L+R+D L+GL N ++L + S V Sbjct: 328 YIEAHRLKRALLRGTRLTSARLARLDHEALTDPLTGLYNRRGVANALRLLAGPHRPFSAV 387 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK+IND GH VGD+V+ ++ + GR+GGEEF ++ + A Sbjct: 388 MLDVDHFKRINDRDGHDVGDQVLKHIAALIREQARHDDITGRIGGEEFILLLPDATPEGA 447 Query: 193 AILANDLRKIIENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249 A LR+ +E P+ +T+S G+A R +E + ++ +D ALY AK+ Sbjct: 448 FKTAERLRRAVE-----ARPNPTGRVVTVSLGVAHYPRASEE-VDAVLKLSDLALYQAKR 501 Query: 250 SGRNRVVCFS 259 SGRNR V + Sbjct: 502 SGRNRTVLYQ 511 >gi|220903700|ref|YP_002479012.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867999|gb|ACL48334.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 317 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 81/173 (46%), Gaps = 14/173 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151 +R ++S D L+GLLN AFIS + +++ DIDYFK+IND +GH G Sbjct: 140 SRYKEMSCRDSLTGLLNRRAFISRAMDMLKDPPDQGQAAVIMADIDYFKKINDTWGHACG 199 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ + R GGEEF G Q +A LR+ I + Sbjct: 200 DAVLRHMAQIFLSQLREDDLCCRYGGEEFILLLPGMGLQPGYSVAERLRRHICAEPLAY- 258 Query: 212 SGPSIHITISAGIAERCHKEPI-------STIIYRADQALYVAKKSGRNRVVC 257 G I IT S G++ P+ + AD LY AKK+GRNRVVC Sbjct: 259 EGHDIAITASLGVSCIDLNGPLPDSASVFEMTVKEADSCLYRAKKTGRNRVVC 311 >gi|163738617|ref|ZP_02146031.1| diguanylate cyclase [Phaeobacter gallaeciensis BS107] gi|161387945|gb|EDQ12300.1| diguanylate cyclase [Phaeobacter gallaeciensis BS107] Length = 476 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 89/176 (50%), Gaps = 29/176 (16%) Query: 107 DCLSGLLNH---SAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GL N F+ + S + E +++ D+D+FKQIND +GHPVGD V+ + Sbjct: 296 DPMTGLFNRRYAKPFLERVASTSAKTGETFAVMLADLDHFKQINDLYGHPVGDAVLIEAA 355 Query: 160 DQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQINISS-GPSI 216 +L + R+GGEEF A+G + EAA A+DL I + +I I Sbjct: 356 KRLQTALRPVDLLARVGGEEFMIVMPAIGEAMAEAA--ASDLCNRINSKPFHIPGVDAPI 413 Query: 217 HITISAGI-----------------AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++TIS G+ A + H +S +I AD+ALY AK +GRN+V Sbjct: 414 YVTISIGVVIGGRASAVDQRDGTDLAPQDHDSAVSALITNADRALYSAKHAGRNQV 469 >gi|153830180|ref|ZP_01982847.1| GGDEF family protein [Vibrio cholerae 623-39] gi|229529368|ref|ZP_04418758.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|148874320|gb|EDL72455.1| GGDEF family protein [Vibrio cholerae 623-39] gi|229333142|gb|EEN98628.1| GGDEF family protein [Vibrio cholerae 12129(1)] Length = 353 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152 N + L+ D L+G N + +S + L ++ D+D+FK IND FGH GD Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGD 232 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + V G R+GGEEF S ++A + LR I+ SQ + Sbjct: 233 KVLIETTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289 Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + +TIS G+ E + ++ ++ AD LY AKK+GRN+V F N Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342 >gi|157827084|ref|YP_001496148.1| response regulator PleD [Rickettsia bellii OSU 85-389] gi|157802388|gb|ABV79111.1| response regulator PleD [Rickettsia bellii OSU 85-389] Length = 457 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 79/163 (48%), Gaps = 10/163 (6%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N F + KL ++ DID FK +ND +GH GDKV+ Sbjct: 294 LAAKDGLTGLFNRRYFDVHIKQIVEKANKEGMKLYLLMCDIDNFKHVNDTYGHQAGDKVL 353 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSG 213 S L F + R GGEEF + +A A +R IE N QI+ Sbjct: 354 ITTSRILKNTFRVTDLIARFGGEEFTILLNDINIDQAIYTAERVRVKIESMNFQIDEQEE 413 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P + T+S G+ E E I I R+D+A+Y AK +G+N+VV Sbjct: 414 P-LKKTVSIGVTEYKKCESIEEFIERSDKAMYEAKTTGKNKVV 455 >gi|228947764|ref|ZP_04110051.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811751|gb|EEM58085.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 431 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + NE ++++ FDID FK +ND +GH Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 321 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 322 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 380 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 381 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 426 >gi|218699484|ref|YP_002407113.1| putative diguanylate cyclase [Escherichia coli IAI39] gi|218369470|emb|CAR17235.1| putative diguanylate cyclase [Escherichia coli IAI39] Length = 564 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132 LL Y+ ++ +++ + + + D L+ L N A ++ S++ Sbjct: 374 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCQTHQHPFSVI 433 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ +A Sbjct: 434 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 493 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250 A +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+AK++ Sbjct: 494 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 553 Query: 251 GRNRV 255 GRNRV Sbjct: 554 GRNRV 558 >gi|83643672|ref|YP_432107.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631715|gb|ABC27682.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 367 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 8/160 (5%) Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+ L N L + S++ DID+FK IND +GH GD V+ Sbjct: 196 ARTDELTQLPNRRDMQQQLEKEYFRYKRHGSHFSVILLDIDHFKMINDTYGHDAGDFVLM 255 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +S+ LV R GGEEF +S +A LA LRK IE S + + I Sbjct: 256 KISELLVNACRKMDMAARWGGEEFLIQLPDTSLVQALTLAERLRKSIEASPLQYKN-QEI 314 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TIS G+ + +++++ +AD LY AK GRN V+ Sbjct: 315 RYTISCGVCSISQAKDLASLLKQADVNLYQAKIKGRNMVI 354 >gi|78047166|ref|YP_363341.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035596|emb|CAJ23266.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1065 Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 8/174 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +L L I + + + D L+GL N F IS L + DID+FK+ Sbjct: 890 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSGRPLVLAILDIDHFKR 949 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND++ H GD V+ + L RLGGEEFA ++ EA L +R Sbjct: 950 INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEAQALCLRIRA 1009 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +++ N +S + +T SAG+A + S+++ RAD ALY AK +GR+R+ Sbjct: 1010 LF-HARHNWASVEGLQVTFSAGVAALRDDDTGSSLMQRADHALYEAKSAGRDRI 1062 >gi|127513133|ref|YP_001094330.1| diguanylate cyclase [Shewanella loihica PV-4] gi|126638428|gb|ABO24071.1| diguanylate cyclase [Shewanella loihica PV-4] Length = 400 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 89/187 (47%), Gaps = 28/187 (14%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL---------GSYNE------------KLSIVFFDID 137 R+ ++S D L+GL N FI + SY+ L + DID Sbjct: 173 RLQEMSHRDPLTGLKNRR-FIEEMIAQDLNRVDRSYDATQLRGEGTPSKADLLALIIDID 231 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK IND +GH GD+V++ + +L +F +V R GGEEF A QE LA Sbjct: 232 HFKPINDTYGHLAGDRVLSQVGQRLTTLFRNYDYVVRWGGEEFLVVARFIDRQEINHLAE 291 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAE----RCHKEPIS--TIIYRADQALYVAKKSG 251 +R IE+ +I + + +I IT S G A + IS +++ AD ALY AK S Sbjct: 292 KVRHAIESMEIELDAKRNIKITASVGAAPYPFSTAQADRISWEQVVHLADMALYQAKTSS 351 Query: 252 RNRVVCF 258 RN V + Sbjct: 352 RNTWVSY 358 >gi|228987234|ref|ZP_04147355.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772463|gb|EEM20908.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 430 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + NE ++++ FDID FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 425 >gi|190892769|ref|YP_001979311.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190698048|gb|ACE92133.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 783 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 14/179 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL S +R + + D L+GLLN F I++ + ++L+ +F D+D FK IND Sbjct: 336 ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDSKIAAADASGQELACLFVDLDRFKWIND 395 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203 N GH GDK + L ++L RLGG+EFA +E+ A + + I Sbjct: 396 NMGHAAGDKALIELVERLKTHLAPSDEAARLGGDEFAILLPAKDAERRAKAMCEQIASIF 455 Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 E P +H++ S GI+ H + ++ ++D A+Y K+ G+N F ++ Sbjct: 456 ET-----PFAPDMHLSASIGISIYPHHATTAAELLQKSDMAMYAKKRDGKNGAQLFDNV 509 >gi|103485959|ref|YP_615520.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingopyxis alaskensis RB2256] gi|98976036|gb|ABF52187.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingopyxis alaskensis RB2256] Length = 878 Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 23/194 (11%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDID 137 SG+ L + S I+QL+R D L+GL N A + +G + +++ D+D Sbjct: 329 SGTDLTDQKRSEREINQLARYDTLTGLANRRHITDLLERALRTHIGQ-PQPCALLLMDLD 387 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAIL 195 FK +ND GHPVGD+++ ++ +L + G VGRLGG+EF L E+ A I Sbjct: 388 RFKAVNDTLGHPVGDQLLQQVAGRLTQIVGDKGQVGRLGGDEFQIVLPQLNHPEKIAGIA 447 Query: 196 ANDLRKI-----IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 + + IE Q+ I S I ++ G++ S ++ AD ALY AK + Sbjct: 448 NAIILSLAKPFAIEGEQVRIGSSIGIAVSDGEGVSA-------SALVRNADLALYAAKDA 500 Query: 251 GRNRVVCFSDIENN 264 GR ++D +N Sbjct: 501 GRGVYRFYADAMHN 514 >gi|269104333|ref|ZP_06157029.1| GGDEF family protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268160973|gb|EEZ39470.1| GGDEF family protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 532 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 35/246 (14%) Query: 12 WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL 71 WL H K F + + I +IF + VI + + Y L+ L+Y L E Sbjct: 316 WLLHFKQSTDFDMNEYWILGAIFI---VGLVIALLASLVTYQQLSQNQRLQYALTERT-- 370 Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL 129 KEL N D L+ LLN AF +L + +++ Sbjct: 371 -------------------KELEFLVNH-------DSLTRLLNRRAFRLTLPLWIESKQF 404 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 ++V FDID FK IND +GH GD+ + ++ + + + RLGG+EFA + Sbjct: 405 TLVGFDIDKFKSINDTYGHIAGDEALIHVTQLVQGLLQKHEQLYRLGGDEFAILMPETDT 464 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 + + N +R +E+S + I G I+ T+S G ++E +IY++D +Y +K+ Sbjct: 465 TKIYEVLNRVRSAVEHSPL-IYQGAKIYCTLSIGAVVHSNQEA-EALIYQSDLQMYKSKQ 522 Query: 250 SGRNRV 255 GRNR+ Sbjct: 523 QGRNRI 528 >gi|258621651|ref|ZP_05716682.1| GGDEF family protein [Vibrio mimicus VM573] gi|258585882|gb|EEW10600.1| GGDEF family protein [Vibrio mimicus VM573] Length = 440 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 20/165 (12%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L + S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQEQARLVRWQLNQFSVLFIDIDYFKQVNDVYGHGIGDDL 331 Query: 155 IAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + + V+V + G R GGEEF + +A LA+ LR +EN + Sbjct: 332 LR----EFVLVISREIREGDRLVRWGGEEFVVFCAQTGIDQAVDLADRLRTRVENHSW-L 386 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G +T S GIA+ E ++ + RAD+ALY AK+ GRNR+ Sbjct: 387 HGG---ELTCSIGIAQ-MENERVTETVSRADEALYRAKRLGRNRI 427 >gi|254784921|ref|YP_003072349.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237685780|gb|ACR13044.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 300 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 9/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIN 143 + L + + +L+ D L+ + N F S + +LS++ FD+D FK +N Sbjct: 126 RALVRANEELERLATQDTLTDVYNRRHFFTLAEAEFSKARRHGRQLSVLMFDVDLFKAVN 185 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD+ + +++ V +GRLGGEEFA + A LA +R Sbjct: 186 DTYGHAAGDQALRTITECCRHVVRDSDILGRLGGEEFALCCPDADLDGAFHLAERIRTNC 245 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 E +Q+N+ + IT+S G+ + K+ ++ RAD L+ AK GRNR V Sbjct: 246 ELAQVNLDDA-AFGITLSIGVTQMNEKDAHFDHLLQRADTLLFQAKALGRNRSV 298 >gi|167906045|ref|ZP_02493250.1| EAL/GGDEF domain protein [Burkholderia pseudomallei NCTC 13177] Length = 688 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IND+ GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A D+ + + + N G ++ +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+ GR Sbjct: 406 AAKRGGR 412 >gi|254286348|ref|ZP_04961306.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|150423515|gb|EDN15458.1| GGDEF family protein [Vibrio cholerae AM-19226] Length = 353 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152 N + L+ D L+G N + +S + L ++ D+D+FK IND FGH GD Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGD 232 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + V G R+GGEEF S ++A + LR I+ SQ + Sbjct: 233 KVLIETTRLFAQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289 Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + +TIS G+ E + ++ ++ AD LY AKK+GRN+V F N Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342 >gi|71278056|ref|YP_270245.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71143796|gb|AAZ24269.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 322 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 13/163 (7%) Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS+ D L+ L N + + + L G S+V DID+FK +ND +GH VGD VI Sbjct: 155 LSQTDGLTQLFNRAHWETCLLAEHKRWGRSQHASSLVMLDIDHFKNVNDTYGHVVGDVVI 214 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 LS + GR GGEEFA +S + A + A LRK + + + + Sbjct: 215 RHLSSLIRHHVRETDICGRYGGEEFAILLADTSLKNAYVFAERLRKEVAKATVTYND-ID 273 Query: 216 IHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255 I+ TIS G+AE E I++ + AD ALY +K++GRN+ Sbjct: 274 INYTISVGVAEV--DESITSHEAWVECADAALYQSKETGRNKT 314 >gi|304396822|ref|ZP_07378702.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp. aB] gi|304355618|gb|EFM19985.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp. aB] Length = 694 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 25/207 (12%) Query: 64 ILVENLSLVIISITI--SLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFIS 120 + V ++L+I+ IT+ S+L + + L N+ + QL+ D L+ L N + Sbjct: 217 VWVTLITLIILGITLLSSMLDAQLRAARLATRLRHANQELRQLAMHDNLTALPNRAMLEQ 276 Query: 121 SL------GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L NE + ++++ D+D FK +ND +GH VGD+++ +S++L M + Sbjct: 277 QLDLAIKQAMLNENRFAVIYMDLDGFKAVNDTWGHHVGDRLLVAVSERLRSQLSNTMLLV 336 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------SIHITISAGIAE- 226 RLGG+EF A A LA L K+I S P +H+++SAGIA Sbjct: 337 RLGGDEFVLMAEACDVTPARQLAQKLVKVI--------STPFELDRYVLHVSLSAGIAIF 388 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRN 253 H +++ AD A+Y K SGRN Sbjct: 389 PLHGRNRQELLFNADSAMYHTKHSGRN 415 >gi|258405650|ref|YP_003198392.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692] gi|257797877|gb|ACV68814.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692] Length = 321 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 10/173 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 +EL + +I+++SR+D L+GL N S F L + + +I+ D+D+FK+IN Sbjct: 149 QELEWANEKITRISRMDYLTGLSNRSYFQERLKEIFALTKRHGLEFTILLADLDHFKRIN 208 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GDKV+ L T R GGEEF + +R+ + Sbjct: 209 DTYGHDMGDKVLQAFGTLLANECRTEDLPARYGGEEFILVFPKTHASGVITFYERIRREL 268 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S ++ P +T SAGI E +++ +AD ALY AKK+GR+R V Sbjct: 269 IHS--DLLPDPDF-VTFSAGITEYEEGGTEISLLKKADDALYEAKKNGRDRYV 318 >gi|209516012|ref|ZP_03264872.1| diguanylate cyclase [Burkholderia sp. H160] gi|209503472|gb|EEA03468.1| diguanylate cyclase [Burkholderia sp. H160] Length = 563 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 21/180 (11%) Query: 90 LKELFISYNRI-SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141 L E S N + S +R D L+G L+ F+ L + E L + D+D+FKQ Sbjct: 372 LAEQLQSANTLLSAEARHDALTGALSRRYFLDLLRHEIDRAHAGREPLCMAIADLDHFKQ 431 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH GD+ + D + +GRLGGEEF L S+ LA+ R+ Sbjct: 432 INDRFGHAAGDRALEHFVDTCRAELRSTDAIGRLGGEEF-GLLLPSTN-----LASG-RE 484 Query: 202 IIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++E ++ + + P S+ +++S GI E + I+ RAD ALY AK GR+R Sbjct: 485 VVERLRLRLKAVPSPRLPASVGLSVSIGITELSPDDLPERIMSRADTALYAAKTGGRDRT 544 >gi|78047100|ref|YP_363275.1| putative signal transduction protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035530|emb|CAJ23176.1| putative signal transduction protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 324 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 15/196 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119 + +S +++++ ++L +GY +++ + + +L+ +D L+GL N I Sbjct: 133 QGVSTIVVTL-VTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTHQI 188 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ S++ D+D+FK++ND +GH GD ++ L+ L P V R GGEE Sbjct: 189 DQRQPHDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVREPHQVFRFGGEE 248 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F S E LRK+I N GP IT+S G A + R Sbjct: 249 FVVLLRAGSLAELEAATERLRKVIRNGL----RGPGGRITVSLGAARHDGETHWQDWFSR 304 Query: 240 ADQALYVAKKSGRNRV 255 AD ALY+AK GR+ V Sbjct: 305 ADAALYLAKNGGRDSV 320 >gi|294665480|ref|ZP_06730764.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604734|gb|EFF48101.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 375 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N AF +L + E+ LS+ D+D+FK +ND GH GD V+ Sbjct: 219 TRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLR 278 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 LS L + R GGEEF + +A + LR+ + I ++ Sbjct: 279 ELSTLLRAHMAGAGTIARYGGEEFVLLLPNADLLQARVQCEYLRQSVAAMTI------AL 332 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +T+S G+A +E + +I RADQALY AK+ GR++VV Sbjct: 333 PVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE 375 >gi|229520623|ref|ZP_04410047.1| GGDEF family protein [Vibrio cholerae TM 11079-80] gi|229342447|gb|EEO07441.1| GGDEF family protein [Vibrio cholerae TM 11079-80] Length = 353 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152 N + L+ D L+G N + +S + L ++ D+D+FK IND FGH GD Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGD 232 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + V G R+GGEEF S ++A + LR I+ SQ + Sbjct: 233 KVLIETTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289 Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + +TIS G+ E + ++ ++ AD LY AKK+GRN+V F N Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342 >gi|253699795|ref|YP_003020984.1| diguanylate cyclase [Geobacter sp. M21] gi|251774645|gb|ACT17226.1| diguanylate cyclase [Geobacter sp. M21] Length = 459 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 12/168 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 YN L ID L+GL N+ + Y LS++F DID FK +ND FGH Sbjct: 282 YNFAKDLLYIDELTGLYNYRYLDVVLERELKRSERYGSNLSVLFLDIDLFKSVNDTFGHL 341 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +G +V+ + L V R GG+E+ + + AAI+A +RK++E + Sbjct: 342 IGSRVLREIGSLLRKSVRDVDAVIRYGGDEYTIVLVETGLDGAAIVAERIRKMVEAHTFS 401 Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNR 254 + G +I +T+S G A C + ST ++ ADQA+Y K +G+N+ Sbjct: 402 KADGLAIKLTVSLGYA--CSPDDASTKTELLEMADQAMYRGKAAGKNK 447 >gi|188588956|ref|YP_001920122.1| ggdef domain protein [Clostridium botulinum E3 str. Alaska E43] gi|188499237|gb|ACD52373.1| ggdef domain protein [Clostridium botulinum E3 str. Alaska E43] Length = 1728 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 11/165 (6%) Query: 104 SRIDCLSGLLNHS----AF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S +D L+G+ N AF I S + S++ FDID FK +ND +GH GD+V+ Sbjct: 1392 STLDKLTGVYNRKYLEKAFCDLIDDSYSKEREFSLIIFDIDDFKGVNDRYGHQTGDEVLI 1451 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ ++ R GGEEF SE EA + + +R +E ++I G Sbjct: 1452 KLTKEVKKCLSKEDIFVRYGGEEFIILLPDKSEYEAYLFSEKIRNRVECAKI---LGEKR 1508 Query: 217 HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +TIS GI+ H +I ADQALY++K G+N+ +++ Sbjct: 1509 KVTISLGISVYLKHSSNSEDLIKMADQALYISKAQGKNKTTIWNE 1553 >gi|149194056|ref|ZP_01871154.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus TB-2] gi|149136009|gb|EDM24487.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus TB-2] Length = 395 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 13/168 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YN--EKLSIVFFDIDYFKQINDNFGH 148 +L+ SY ++++ +ID L+ + N L +N E +I DID+FK+IND +GH Sbjct: 236 DLYDSYKKVNKKLQIDSLTNVYNRYCLEHHLEKVFNLYENKTIAMLDIDFFKKINDTYGH 295 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDKV+ + + V V R GGEEF ++++EA I+ +++ + Sbjct: 296 QYGDKVLEHFAKTIKSVVRKSDIVIRYGGEEFLIFFPNTTKKEALIILLKIKRRLHECDY 355 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 N T SAGI++ P +I AD+ LY AKK GR+R++ Sbjct: 356 N--------YTFSAGISDEGSSLP--EMIKIADERLYKAKKEGRDRII 393 >gi|197118430|ref|YP_002138857.1| GAF domain-containing sensor diguanylate cyclase [Geobacter bemidjiensis Bem] gi|197087790|gb|ACH39061.1| sensor diguanylate cyclase, GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 704 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 9/174 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 E+ R QLS D L+GL N + L + L+++F D+D+FK ND Sbjct: 493 EVLEESERFEQLSVTDALTGLYNRRFLKNRLEEELNRSIRQGLNLTVIFIDLDFFKNYND 552 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD + ++ + V R GGEEF A G+S+ EA I+A +R IE Sbjct: 553 LCGHLAGDDALRTTAEIIKASLRDMDIVARYGGEEFCAVLPGTSKVEAMIVAERIRSEIE 612 Query: 205 NSQINISSG-PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 S P + +T S G+A + +++ +D ALY AK GRNR+V Sbjct: 613 REIFPGESEIPQVRLTASLGVASFPEDGRTFTALVHASDVALYEAKAGGRNRIV 666 >gi|153213333|ref|ZP_01948722.1| GGDEF family protein [Vibrio cholerae 1587] gi|124115986|gb|EAY34806.1| GGDEF family protein [Vibrio cholerae 1587] Length = 353 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152 N + L+ D L+G N + +S + L ++ D+D+FK IND FGH GD Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGD 232 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + V G R+GGEEF S ++A + LR I+ SQ + Sbjct: 233 KVLIETTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289 Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + +TIS G+ E + ++ ++ AD LY AKK+GRN+V F N Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342 >gi|86360811|ref|YP_472698.1| putative two-component response regulator protein [Rhizobium etli CFN 42] gi|86284913|gb|ABC93971.1| putative two-component response regulator protein [Rhizobium etli CFN 42] Length = 416 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQIN 143 + EL + R+ +L+R D L+G+ N + +L G ++++ DID+FK +N Sbjct: 221 VAELADANARLERLARTDPLTGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKGLN 280 Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D GH GD+ + ++ + V V R GGEEF E+EA +A +R+ Sbjct: 281 DKLGHGEGDRCLVKVAGIIQSCVRADRDLVSRHGGEEFLVVLPDVDEEEAVAVARRIRES 340 Query: 203 IENSQI-NISS--GPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256 +E + + N +S GPS +T+S G+A + + ++ + + AD ALY AK++GRN+V Sbjct: 341 VEAAALPNPASSVGPS--VTLSVGVAFKSRADTGVSLANLQHEADMALYRAKEAGRNQVS 398 Query: 257 CF 258 F Sbjct: 399 VF 400 >gi|258626326|ref|ZP_05721173.1| GGDEF family protein [Vibrio mimicus VM603] gi|258581378|gb|EEW06280.1| GGDEF family protein [Vibrio mimicus VM603] Length = 489 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ++L+ D ++GLLN L +N+ L+I DID FKQIND +GH +GDKVI ++ Sbjct: 332 AELAARDPMTGLLNRRGMEGFLQGKRHNQYLAIAVLDIDDFKQINDTYGHDMGDKVICYI 391 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +Q+ + V R GGEEF EQ I+ + +S + G Sbjct: 392 GEQIENHIRSSDAVARFGGEEFVVYVTAKEQEQIHRIMHRIFDAVCHDSTQILDQG---- 447 Query: 218 ITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G I E + + ADQ LYVAK SG+N++V Sbjct: 448 FTVSGGVEIVESKTELTFEELFKAADQKLYVAKSSGKNQLV 488 >gi|325981418|ref|YP_004293820.1| diguanylate cyclase with GAF sensor [Nitrosomonas sp. AL212] gi|325530937|gb|ADZ25658.1| diguanylate cyclase with GAF sensor [Nitrosomonas sp. AL212] Length = 411 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 19/204 (9%) Query: 67 ENLSLVIISITISLLLG----YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 ++L+L I S IS+L+ Y + K+L + Q D L+GL N L Sbjct: 200 QDLALQIAS-QISVLIEKNQLYQGVKLNKQLKAQKKSLEQRVTHDALTGLFNRPGIFDIL 258 Query: 123 ---------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 G Y ++I+ DID+FK IND +GH GD V+ ++++L + ++G Sbjct: 259 HKQIQRAKRGGYG--IAIIMIDIDHFKAINDTYGHLTGDAVLCEIANRLTQSARSHEYIG 316 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF A ++ A A R + +I ++ + +TIS G+A E + Sbjct: 317 RYGGEEFLAIISPYNQDGALKAAERFRNAVACKEIK-ANETFVSVTISLGVAISAEAETL 375 Query: 234 ST--IIYRADQALYVAKKSGRNRV 255 ++ +AD+ALY AK GRNRV Sbjct: 376 DEKWLLKKADEALYQAKHKGRNRV 399 >gi|170742613|ref|YP_001771268.1| diguanylate cyclase [Methylobacterium sp. 4-46] gi|168196887|gb|ACA18834.1| diguanylate cyclase [Methylobacterium sp. 4-46] Length = 404 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 111/233 (47%), Gaps = 29/233 (12%) Query: 37 IFIATVIFIANIFLF-YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95 + +AT + A I + + P Y + + LV +T+ ++SG+ ++ L Sbjct: 145 VMLATAVLFAPILVGGLMRPEPAYQVGAAI-----LVPFWLTVRESARHLSGAFIERLE- 198 Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPV 150 + ++ + D L+GLLN + F++ LG+ E+ +++ D+D FK++ND GHPV Sbjct: 199 AKRALAHQAEHDALTGLLNRAGFLARLGAALEQAGSRPFALIAIDLDGFKRVNDRLGHPV 258 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---------AAAALGSSEQEAAILANDLRK 201 GD V+ + +L GRLGG+EF AA +E+ A L +D Sbjct: 259 GDAVLVEVGMRLRRCLAPDDVAGRLGGDEFMILTRADGGVPAAADRAERVIAAL-SDPYP 317 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + E +I S+G + S E + ++ R D+ALY AK+ GR R Sbjct: 318 VAEPQRIGASAG----LASSEDWREALDA---AALLERVDEALYAAKRGGRGR 363 >gi|121728414|ref|ZP_01681441.1| GGDEF family protein [Vibrio cholerae V52] gi|121629287|gb|EAX61721.1| GGDEF family protein [Vibrio cholerae V52] Length = 353 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152 N + L+ D L+G N + +S + L ++ D+D+FK IND FGH GD Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGD 232 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + V G R+GGEEF S ++A + LR I+ SQ + Sbjct: 233 KVLIETTRLFAQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289 Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + +TIS G+ E + ++ ++ AD LY AKK+GRN+V F N Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342 >gi|77460772|ref|YP_350279.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens Pf0-1] gi|77384775|gb|ABA76288.1| putative sensory box GGDEF/EAL domain protein with PAS/PAC sensor [Pseudomonas fluorescens Pf0-1] Length = 757 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 107/210 (50%), Gaps = 15/210 (7%) Query: 62 EYILVENLSLVIISITISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFI 119 ++ VEN + + LL + G IL E ++ +++ L+R D L+GL N + I Sbjct: 276 DWRWVENRYIPVRDHDGRLL--EVEGIILDITERRLAEEKMNLLARTDGLTGLANRATLI 333 Query: 120 SSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 L + + D+D+FK+IND GHPVGD ++ ++ ++ V Sbjct: 334 ERLHQAFAAARRGAAPFAVFYLDLDHFKRINDTLGHPVGDLLLQEVAQRIKSNVRENDVV 393 Query: 173 GRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHK 230 RLGG+EFA L S+ ++A +A +R + SQ +G ++H ++S GI R Sbjct: 394 ARLGGDEFAILQLDVSDPTQSATVATKIRDAL--SQPYHLTGNALHTSVSIGICLYRSTS 451 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +++ AD ALY AK++GRN+ +S+ Sbjct: 452 LDADSLLAGADMALYRAKETGRNQYQFYSE 481 >gi|325926523|ref|ZP_08187840.1| diguanylate cyclase with GAF sensor [Xanthomonas perforans 91-118] gi|325543095|gb|EGD14541.1| diguanylate cyclase with GAF sensor [Xanthomonas perforans 91-118] Length = 388 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N AF +L + E+ LS+ D+D+FK +ND GH GD V+ Sbjct: 232 TRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLR 291 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 LS L + R GGEEF + +A + LR+ + I ++ Sbjct: 292 ELSALLRAHMAGAGTIARYGGEEFVLLLPNTDLLQARVQCEYLRQSVAAMTI------AL 345 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +T+S G+A +E + +I RADQALY AK+ GR++VV Sbjct: 346 PVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE 388 >gi|257092693|ref|YP_003166334.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045217|gb|ACV34405.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 496 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 12/197 (6%) Query: 71 LVIISITI-SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-- 127 L+ +T+ + ++ Y S +L+ L ++ +LS D L+G + F+ L E Sbjct: 301 LLAFGVTVPTTVVAYRSLRLLRALASRDAQLHRLSTTDGLTGASSRQHFVDELADQMETA 360 Query: 128 -----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 L+++ F+ID+F++IND +GH VGD+V+ + +GRLG EFA Sbjct: 361 RRQASALTVLLFNIDFFQRINDGYGHAVGDQVLVAFARVARGCLRERDLLGRLGAGEFAI 420 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGI-AERCHKEPISTIIYRA 240 G++ +EA ++A +R+ E ++I I++ ++ T SAG+ A + ++ RA Sbjct: 421 LLPGTAVEEAVLVAERVRR--ETAEIAIATENGTVQFTASAGLTAAHMADSSVDDLLKRA 478 Query: 241 DQALYVAKKSGRNRVVC 257 +AL+ A+ G +RVV Sbjct: 479 AKALHDARTGGHDRVVV 495 >gi|288940811|ref|YP_003443051.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Allochromatium vinosum DSM 180] gi|288896183|gb|ADC62019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Allochromatium vinosum DSM 180] Length = 1147 Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 17/173 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+GL N F LG +++ ++ D+D+FK +ND+ GHPVGD Sbjct: 713 IQHLAFHDSLTGLPNRLLFKEELGQALAALRRDDQRFALHMLDLDHFKDVNDSLGHPVGD 772 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIEN-SQINI 210 +++ ++++L + + R GG+EFA E +AA LA KIIE Q Sbjct: 773 ELLRAVAERLTAITRGTDVLARFGGDEFALLQSKIGEIGDAAALAT---KIIEAFGQAFW 829 Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G I I S GI + CH + II RAD ALY AK++GR F+D Sbjct: 830 IDGNRIDINTSIGILIADQACHD--VDDIITRADVALYKAKEAGRGTHAFFAD 880 >gi|167742071|ref|ZP_02414845.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 14] Length = 688 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IND+ GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A D+ + + + N G ++ +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+ GR Sbjct: 406 AAKRGGR 412 >gi|89092562|ref|ZP_01165515.1| Signal transduction histidine kinase [Oceanospirillum sp. MED92] gi|89083074|gb|EAR62293.1| Signal transduction histidine kinase [Oceanospirillum sp. MED92] Length = 427 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 12/170 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I +L+ D L+GL N F I N ++ DID+FKQ ND +GH G Sbjct: 256 KIEKLAVTDSLTGLFNRRNFEYLSDSLIERAKRENSFFCLIILDIDHFKQYNDTYGHLEG 315 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209 D+V+ +S L V + R+GGEEFA ++ A LA ++ +E+ I + Sbjct: 316 DEVLKKISQTLRKNVRRGNDYCFRVGGEEFAVIFTERTKGAATALAERIKNEVESLAIPH 375 Query: 210 ISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +G S ++TIS G+ + ++PIS I D+ LY AK+SGRN+++ Sbjct: 376 KHNGASQYVTISLGLMMTKDFTDEDPISAIYQHTDELLYKAKESGRNKLI 425 >gi|126456988|ref|YP_001075141.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 1106a] gi|167849102|ref|ZP_02474610.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei B7210] gi|242313043|ref|ZP_04812060.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 1106b] gi|126230756|gb|ABN94169.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 1106a] gi|242136282|gb|EES22685.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 1106b] Length = 688 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IND+ GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A D+ + + + N G ++ +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+ GR Sbjct: 406 AAKRGGR 412 >gi|323702219|ref|ZP_08113886.1| diguanylate cyclase and metal dependent phosphohydrolase [Desulfotomaculum nigrificans DSM 574] gi|323532906|gb|EGB22778.1| diguanylate cyclase and metal dependent phosphohydrolase [Desulfotomaculum nigrificans DSM 574] Length = 555 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 11/175 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N + +L+ D LSG+ NH F + N+ +S++ FDID+FK ND FGH Sbjct: 178 NYLLELANKDGLSGVYNHRYFQDYFKKSVEEAKETNQPISLIIFDIDFFKYYNDTFGHTA 237 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 GD+V+ + L+ P R GG+EF + A + A L+ I +N Sbjct: 238 GDQVLRDVGQVLLQEIKHPGIAARYGGDEFCILLPHHDSKAAFLTAKKLKDKINELILND 297 Query: 210 --ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 ++ P+ ++I+ G+A H + ++ ADQALY AK++ ++++ + ++ Sbjct: 298 EKVNQLPTGKLSITVGVASFPEHTKSGEDLLELADQALYKAKRTSKDKIELYFNV 352 >gi|323691857|ref|ZP_08106111.1| hypothetical protein HMPREF9475_00973 [Clostridium symbiosum WAL-14673] gi|323504064|gb|EGB19872.1| hypothetical protein HMPREF9475_00973 [Clostridium symbiosum WAL-14673] Length = 611 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 98/179 (54%), Gaps = 16/179 (8%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQ 141 ISG KE+ N +S LS D L+GL+N AF+ + + E+ + FF D+D FK Sbjct: 434 ISGRKAKEM----NLLS-LSCTDALTGLMNREAFVGRVDTLIEEKNKGFFFMIDVDNFKM 488 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND GH GD + + + L F V R+GG+EFAA +S+ E A +L Sbjct: 489 VNDTKGHEAGDGCLTRIGELLRQSFRDYDPVARIGGDEFAAFMSDTSDIENAQKKAEL-- 546 Query: 202 IIENSQINISSGP-SIHITISAGIAERCHKEPIS-TIIYR-ADQALYVAKKSGRNRVVC 257 I+ S++ S G + +++S GIA C + S +YR AD A+Y+AK+ G+NR +C Sbjct: 547 IL--SKLKHSQGEGEMEMSVSIGIAA-CPDDGQSYQELYRNADHAMYLAKREGKNRFIC 602 >gi|301018185|ref|ZP_07182702.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] gi|300399838|gb|EFJ83376.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] Length = 436 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 11/189 (5%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 243 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 302 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 303 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 362 Query: 190 QEAAILANDLR-KIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYV 246 +AA +A +R K+IE + I+ +I I+ S G+ +E + AD+ LY+ Sbjct: 363 TQAAEVAERIRLKLIEKEML-IAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYL 421 Query: 247 AKKSGRNRV 255 AK++GRNRV Sbjct: 422 AKQAGRNRV 430 >gi|241762936|ref|ZP_04760999.1| diguanylate cyclase [Acidovorax delafieldii 2AN] gi|241368111|gb|EER62316.1| diguanylate cyclase [Acidovorax delafieldii 2AN] Length = 350 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 111/256 (43%), Gaps = 31/256 (12%) Query: 28 MIYFSIFFSIFIATVIFIANIFLFYIGLT---------------PFYGLEYILVENLSLV 72 +++F++ S+ + T+ + I GL G E+ ++ ++ Sbjct: 86 LMHFNLLPSVLLITLTVVDKITTGIRGLWLRSLPGMAVGMLAGGALTGFEWAPTTSMPVI 145 Query: 73 IISITISLL----LGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISS 121 I + + L + S +++++ + +L RID L+GL A + Sbjct: 146 IACLPVMALHTVSVSVASYRLIRQVSRQNQLLDELRRIDALTGLYGRGHWQEQAEAALRL 205 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + E +V DID+FKQIND GH VGD+ I L+ + T GR GG+EFA Sbjct: 206 HHATGEPACLVMLDIDHFKQINDLHGHTVGDEAIRALAHIVRSNVRTTDCAGRYGGDEFA 265 Query: 182 AAALGSSEQEAAILANDLRKIIENSQ-INISSGPSIHITISAGIAERCHKE-PISTIIYR 239 G +A +A +I E Q + + P + T S G+A H+ + Sbjct: 266 IVLRGMHMDKALAVAQ---RICEQVQAMRLHDMPELQFTSSLGVAAADHRHSSLRAWTDA 322 Query: 240 ADQALYVAKKSGRNRV 255 AD LY AK SGRNRV Sbjct: 323 ADAELYQAKASGRNRV 338 >gi|170723763|ref|YP_001751451.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas putida W619] gi|169761766|gb|ACA75082.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas putida W619] Length = 459 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + LS DID+FK+IND GHP+GD+VI L+ Sbjct: 300 DSLTGLYNHTHILQLLEDCSFRARREGQPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 359 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 L F+GR GGEEFA ++ A + +++R+ ++I + P + Sbjct: 360 LFLKQRLRKTDFIGRYGGEEFAIVMPNTALDAAHKVLDEIRRRF--AEILYPAQPCDLQC 417 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T SAG+ + + ++ AD+ALY AK +GRN VV Sbjct: 418 TFSAGVVQLDDELDALSMASTADEALYRAKHAGRNCVV 455 >gi|170726877|ref|YP_001760903.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169812224|gb|ACA86808.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 347 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 12/165 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS----YNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 +S +++ D L+ L N AF + S Y + S ++ DID+FK ND GH +GD Sbjct: 175 LSIVAQTDQLTSLFNRRAFEKEIESHMIHYKQDHSASCLLVVDIDHFKLFNDTHGHLIGD 234 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+A+++ L FV R GGEEF + +A +A +R+ I N +++I Sbjct: 235 KVLAYVALALKKTVKGTDFVARYGGEEFVVLLPNTELNDALTVAELVRQKIANQKLSIGK 294 Query: 213 GPSIH----ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 H IT+S G++ + + + RAD+ALY AK SGRN Sbjct: 295 EDK-HSLGSITVSVGVSTLHNSDDRESYFIRADEALYRAKSSGRN 338 >gi|219847712|ref|YP_002462145.1| diguanylate cyclase with GAF sensor [Chloroflexus aggregans DSM 9485] gi|219541971|gb|ACL23709.1| diguanylate cyclase with GAF sensor [Chloroflexus aggregans DSM 9485] Length = 367 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 17/157 (10%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F L YN ++++ DID+FK IND FGH GD+++ ++ Sbjct: 213 DPLTGLLNRRGFEQRLQEEIDRSLRYNVPMALLMVDIDHFKAINDTFGHVAGDEILRMVA 272 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEFA + + IL +R+ ++ ++ P + +T Sbjct: 273 QLLRENVRRHDIVARYGGEEFAVILPATGFEGTPILGERIRRAVQQ-----AAWPYVPVT 327 Query: 220 ISAGIAERCHKEPIST---IIYRADQALYVAKKSGRN 253 IS G A C ++ ++ AD ALY AK+SGRN Sbjct: 328 ISVGGA--CCDATMTNATDLLTAADHALYDAKRSGRN 362 >gi|86361147|ref|YP_473034.1| hypothetical protein RHE_PF00417 [Rhizobium etli CFN 42] gi|86285249|gb|ABC94307.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 637 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 15/180 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L +S ++ L+ D L+G++N AF + N S++ DID FK ND Sbjct: 449 LRLSAEQLKNLAETDGLTGIVNRRAFDEAFARETAGSARKNTPFSLLMVDIDRFKAYNDT 508 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GHP GD+ + +S L P V R GGEEFA +S + A I+A + + Sbjct: 509 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFAVFLPDTSAKGAMIVAEQFARRLA 568 Query: 205 NSQINISSGPSIHITISAGIAERCH-----KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I S +T S GI+ C + + ++ AD ALY AK GRNR++ S Sbjct: 569 QENIVHSGSEFGRVTASIGIS--CATGATLRTSPNRLLAEADAALYEAKTQGRNRILAHS 626 >gi|89898827|ref|YP_521298.1| diguanylate cyclase [Rhodoferax ferrireducens T118] gi|89343564|gb|ABD67767.1| diguanylate cyclase [Rhodoferax ferrireducens T118] Length = 520 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 16/178 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 L +L +R+S +R D L+G LN +S++ L + DID FK++ Sbjct: 346 LVKLHQELDRVSSQARHDPLTGALNRKGLEEAVNREVSNVRRKETPLCVALLDIDNFKKL 405 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILAND 198 ND GH GD +A L+ V + R GGEEF AL + + L + Sbjct: 406 NDALGHASGDVALAHLATVTREVMRPHDTLARYGGEEFVILMPDTALDNGIEAMTRLQRE 465 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 L ++ ++ + IT SAG+A+ E + I RADQA+Y+AK++G+NRV+ Sbjct: 466 L-----TTRFFLAGTEKVLITFSAGVAQLATDETGQSAIKRADQAMYLAKRAGKNRVL 518 >gi|76819816|ref|YP_337542.1| EAL/GGDEF domain-containing protein [Burkholderia pseudomallei 1710b] gi|167819254|ref|ZP_02450934.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 91] gi|167914364|ref|ZP_02501455.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 112] gi|254193156|ref|ZP_04899591.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei S13] gi|254263037|ref|ZP_04953902.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 1710a] gi|254300138|ref|ZP_04967584.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 406e] gi|76584289|gb|ABA53763.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 1710b] gi|157810431|gb|EDO87601.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 406e] gi|169649910|gb|EDS82603.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei S13] gi|254214039|gb|EET03424.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 1710a] Length = 688 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IND+ GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A D+ + + + N G ++ +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+ GR Sbjct: 406 AAKRGGR 412 >gi|330879721|gb|EGH13870.1| GGDEF domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 355 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 21/237 (8%) Query: 27 FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE-----YILVENLSLVIISITISLL 81 +I S ++ +F++ L +I L+P G++ Y+ + + + SI + ++ Sbjct: 103 MIILCSTLLVVYTRDYLFVS--VLSWIILSPAQGIDTDSAAYVFM--MLFFVSSIALGVV 158 Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDY 138 L + L+++ +R +LS D L+ +LN A + +L + N + DID Sbjct: 159 LNHTYTRTLRKVLTLESRFRELSLTDDLTDILNRRALMLALDEHVANNSGSYFLMLDIDN 218 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK IND FGH GD+V+ ++ L G+ F GR+GGEEF S E A Sbjct: 219 FKTINDQFGHDAGDEVLRLMASCLQQTPGSLAF-GRMGGEEFGVILPVSGEPVACDYVLR 277 Query: 199 LRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L I S P++ +T SAG+A+ S ++ AD +Y AK+ G++R Sbjct: 278 LLDTIRRS-------PTVSPLTCSAGLADIDANSTSSQVLKTADVNMYQAKREGKDR 327 >gi|330808552|ref|YP_004353014.1| diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376660|gb|AEA68010.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 523 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 78/167 (46%), Gaps = 18/167 (10%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F +L LS++ DID+FK+ ND +GH GD +A ++ Sbjct: 348 DSLTGLANRRLFERALDIEFGRGARQRSPLSLIMLDIDFFKRYNDAYGHVAGDHCLAEVA 407 Query: 160 DQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 L R GGEEFA ++ A LA +R+ + + I S P+ H+ Sbjct: 408 KVLKDCCHRKADLAVRYGGEEFAVLLPDTNLSGAMALAEQIRRSVIDKHITHSGSPTGHL 467 Query: 219 TISAGIAERCHK------EPISTIIYRADQALYVAKKSGRNRVVCFS 259 T+S G C+ + I I RAD ALY AK GRNRV S Sbjct: 468 TVSLG----CYAFVPSGLDSIEVFIQRADAALYQAKHGGRNRVAVLS 510 >gi|229586486|ref|YP_002844987.1| response regulator PleD [Rickettsia africae ESF-5] gi|228021536|gb|ACP53244.1| Regulatory components of sensory transduction system [Rickettsia africae ESF-5] Length = 450 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F I + KL ++ DID FK +ND +GH GDKV+ +S Sbjct: 291 DGLTGLFNRRYFDIHLKQIIEKTNKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVS 350 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218 L + R GGEEF +A A +R IE +I + Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMNFHIEDQIEPLKT 410 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TIS G+ + +E I + I RAD+A+Y AK +G+N+VV Sbjct: 411 TISIGVTKYKKEESIESFIERADKAMYEAKTTGKNKVV 448 >gi|71735919|ref|YP_276815.1| GGDEF domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556472|gb|AAZ35683.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 432 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 206 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 255 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 256 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 315 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + E +R+ I N +I N S P S+ + Sbjct: 316 EEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAGSVSV 375 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 376 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 422 >gi|114048814|ref|YP_739364.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113890256|gb|ABI44307.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 482 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 8/142 (5%) Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 +H A S+ G+ + +V DID+FK+IND GH VGD ++ LS L V Sbjct: 342 DHRAATSTQGA----ICLVMLDIDFFKEINDTLGHAVGDTILMELSSVLQHCVRESDVVA 397 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF +S + L + I+++ SG + +T S GIA+ EP+ Sbjct: 398 RWGGEEFVILCHNTSLEAVKSLCQRIATAIKDNHF---SG-DVRLTCSFGIAKLAANEPM 453 Query: 234 STIIYRADQALYVAKKSGRNRV 255 + RAD+ALY AK GR+++ Sbjct: 454 QSCFERADKALYQAKAQGRDQI 475 >gi|53717465|ref|YP_105413.1| EAL/GGDEF domain-containing protein [Burkholderia mallei ATCC 23344] gi|67643727|ref|ZP_00442471.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia mallei GB8 horse 4] gi|124382703|ref|YP_001024617.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC 10229] gi|126447769|ref|YP_001078949.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC 10247] gi|167002113|ref|ZP_02267903.1| putative diguanylate cyclase/putative cyclic diguanylate phosphodiesterase [Burkholderia mallei PRL-20] gi|254174526|ref|ZP_04881188.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399] gi|254204109|ref|ZP_04910468.1| putative diguanylate cyclase/putative cyclic diguanylate phosphodiesterase [Burkholderia mallei FMH] gi|254209086|ref|ZP_04915433.1| putative diguanylate cyclase/putative cyclic diguanylate phosphodiesterase [Burkholderia mallei JHU] gi|254355635|ref|ZP_04971915.1| putative diguanylate cyclase/putative cyclic diguanylate phosphodiesterase [Burkholderia mallei 2002721280] gi|52423435|gb|AAU47005.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 23344] gi|124290723|gb|ABM99992.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei NCTC 10229] gi|126240623|gb|ABO03735.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei NCTC 10247] gi|147744993|gb|EDK52074.1| putative diguanylate cyclase/putative cyclic diguanylate phosphodiesterase [Burkholderia mallei FMH] gi|147750309|gb|EDK57379.1| putative diguanylate cyclase/putative cyclic diguanylate phosphodiesterase [Burkholderia mallei JHU] gi|148023728|gb|EDK82790.1| putative diguanylate cyclase/putative cyclic diguanylate phosphodiesterase [Burkholderia mallei 2002721280] gi|160695572|gb|EDP85542.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399] gi|238525126|gb|EEP88555.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia mallei GB8 horse 4] gi|243062177|gb|EES44363.1| putative diguanylate cyclase/putative cyclic diguanylate phosphodiesterase [Burkholderia mallei PRL-20] Length = 688 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IND+ GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A D+ + + + N G ++ +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+ GR Sbjct: 406 AAKRGGR 412 >gi|312946548|gb|ADR27375.1| putative diguanylate cyclase [Escherichia coli O83:H1 str. NRG 857C] Length = 558 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132 LL Y+ ++ +++ + + + D L+ L N A ++ S++ Sbjct: 368 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCQTHQHPFSVI 427 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ +A Sbjct: 428 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 487 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250 A +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+AK++ Sbjct: 488 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 547 Query: 251 GRNRV 255 GRNRV Sbjct: 548 GRNRV 552 >gi|311106475|ref|YP_003979328.1| sensory box protein 7 [Achromobacter xylosoxidans A8] gi|310761164|gb|ADP16613.1| sensory box protein 7 [Achromobacter xylosoxidans A8] Length = 466 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 10/163 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL------GSYNE--KLSIVFFDIDYFKQINDNFGHPVG 151 +++++R+D L+G N + + + G + E + + D+DYFKQ+ND +GH G Sbjct: 298 LARMARVDSLTGCWNRAEILKRMEDRLADGRHGEGGPTTALMLDLDYFKQVNDRYGHLGG 357 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + DQL +GRLGGEEF + A + LR + +I Sbjct: 358 DVALRHFCDQLRTCLREGDSIGRLGGEEFLVLLADADAAVARAICERLRASLRQHPADI- 416 Query: 212 SGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRN 253 G + +++S GIA + S ++ RAD ALY AK+SGR+ Sbjct: 417 DGSVVTLSVSGGIAGFLPGDATASDVLRRADFALYQAKRSGRD 459 >gi|262165615|ref|ZP_06033352.1| GGDEF family protein [Vibrio mimicus VM223] gi|262025331|gb|EEY43999.1| GGDEF family protein [Vibrio mimicus VM223] Length = 525 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 19/206 (9%) Query: 76 ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSY 125 + ISLLLGYI+ +L+E L + L+ D L+G+ N +F +SS+ + Sbjct: 314 VIISLLLGYITRLLLEEKIRLEVMLDERTAELRYLAEHDSLTGIYNRRSFNNLLSSMLNS 373 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAA 184 + ++V FDID FKQIND+ GH VGD + + + + + FV R+GG+EFA + Sbjct: 374 GQPFTLVSFDIDCFKQINDSHGHLVGDDALVHVVNLVTQKLLPNDHFV-RMGGDEFAILS 432 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQA 243 + + + +R +E + + I+ G ++ ++I A I E + S +++ D Sbjct: 433 NVAERETLSNYLESIRATVERNPLAINQGSVALTVSIGASINEDLDE---SELLHSVDAQ 489 Query: 244 LYVAKKSGRNRVVC---FSDIENNTC 266 LY++K GRNRV +S E+N+ Sbjct: 490 LYLSKTLGRNRVSIAEQYSKAESNSA 515 >gi|153824843|ref|ZP_01977510.1| GGDEF family protein [Vibrio cholerae MZO-2] gi|149741561|gb|EDM55591.1| GGDEF family protein [Vibrio cholerae MZO-2] Length = 353 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 120/268 (44%), Gaps = 37/268 (13%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFI---ANIFLFYIGLTPFYGLEYILVE 67 IW C F P F I+ S F+ F+ + +F+ +NI + + L + Sbjct: 98 IWSC-------FVPILFYIFTSARFA-FVTSCLFLIIQSNI------------IYWQLQQ 137 Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSL 122 + + S+ + L YI ++ ++ R + L+ D L+G N + +S Sbjct: 138 TGAAISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSF 197 Query: 123 GSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + L ++ D+D+FK IND FGH GDKV+ + V G R+GG Sbjct: 198 QHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFTQVVGDNNLY-RIGG 256 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTI 236 EEF S ++A + LR I+ SQ + G + +TIS G+ E + ++ + Sbjct: 257 EEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAFGEKRVQVTISIGVCEYQAGDQLNDL 314 Query: 237 IYRADQALYVAKKSGRNRVVCFSDIENN 264 + AD LY AKK+GRN+V F N Sbjct: 315 LKFADMELYRAKKAGRNQVRLFRHGSTN 342 >gi|312879189|ref|ZP_07738989.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM 12260] gi|310782480|gb|EFQ22878.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM 12260] Length = 576 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 82/173 (47%), Gaps = 12/173 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 ++EL + + + +D L+ LN + L Y L+++ DID FK I Sbjct: 406 VEELDEKMEELRRSASLDPLTEALNRRSIERELMAETRRADRYGNPLTVILCDIDRFKSI 465 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD + S + T GR GGEEF A AA LA LR Sbjct: 466 NDRYGHQEGDCALRAFSRIVRGCLRTGDHFGRWGGEEFLVVAPVDGPGGAA-LAEKLRLE 524 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E ++ + T S G+A EP T++ RAD+A+Y AK+SGRNRV Sbjct: 525 LET----VTRATPVPFTASFGVAVYVPGEPPETLVQRADEAMYRAKESGRNRV 573 >gi|307946815|ref|ZP_07662150.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Roseibium sp. TrichSKD4] gi|307770479|gb|EFO29705.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Roseibium sp. TrichSKD4] Length = 777 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 16/178 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 SI E + + L+ D L+ L N F L S NE+L++VF D+D FK Sbjct: 325 SIAIEKMRADREVLHLAHHDMLTALPNRLKFKEKLDSLLVRCRNKNEQLALVFVDLDQFK 384 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA--ND 198 +ND+FGH +GD+V+ ++ +L + V R GG+EF S + A++ D Sbjct: 385 VVNDSFGHSIGDEVLKIIAKRLKTLSSKTDSVFRFGGDEFVILVENESVNKDALVPFLVD 444 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRN 253 LRK + S+ + G + H+T S G+A C + T++ RAD A+Y AK +GR+ Sbjct: 445 LRKSL--SEAILVHGRTFHVTASLGVA--CFPDDGTDAETLVGRADSAMYKAKDAGRD 498 >gi|296102184|ref|YP_003612330.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056643|gb|ADF61381.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 410 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F N ++ S++ D D+FK IND FGH GD+V+ LS Sbjct: 256 DAMTGLLNRRQFYIIAEQMNLTHLPLQQQFSLLLVDTDHFKNINDVFGHLKGDEVLIALS 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L FV R GGEEF +S A +A +R + ++I+I P T Sbjct: 316 RTLEACSRKEDFVFRWGGEEFVILLPRTSLDTALQIAETIRAAV--ARISIPGLPR--FT 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRN+V+ Sbjct: 372 VSIGVARHNQDESIDDLFKRVDDALYRAKNDGRNKVLA 409 >gi|116249172|ref|YP_765013.1| response regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115253822|emb|CAK12217.1| putative response regulator/GGDEF domain transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 642 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 19/188 (10%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L +S ++ L+ D L+G++N AF + N S++ DID FK ND Sbjct: 454 LRLSAEQLRNLAETDGLTGIVNRRAFDEAFARETAGSARKNTPFSLLMVDIDRFKAYNDT 513 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GHP GD+ + +S L P V R GGEEF +S + A I+A +++ Sbjct: 514 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVLLPATSAKGAMIVAEQFARLLS 573 Query: 205 NSQINISSG-------PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + +G SI I+ + G R + + ++ AD ALY AK GRNR++ Sbjct: 574 QENI-VHTGSEFGRVTASIGISCATGATLRLNP---NRLLIEADAALYDAKTQGRNRILA 629 Query: 258 FSDIENNT 265 S E ++ Sbjct: 630 HSPEERHS 637 >gi|89900249|ref|YP_522720.1| diguanylate cyclase [Rhodoferax ferrireducens T118] gi|89344986|gb|ABD69189.1| diguanylate cyclase [Rhodoferax ferrireducens T118] Length = 636 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 15/184 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 L +L ++ +++ +LS +D L+ + N + F +L + + LS++ D+D+FK + Sbjct: 452 LGQLKLANDQLQRLSNMDGLTQIGNRAFFDRALALEHRRADRQKSPLSLIMIDVDHFKLV 511 Query: 143 NDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND++GH GD + +A L + G + R GGEEF + S++Q++ LA Sbjct: 512 NDSYGHMGGDACLRAVAHLLQPRIQRVGD--VLARYGGEEFVILLVNSNQQDSVALAEGF 569 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 R IE + G +IH+T S G+A + +S ++ AD+ALY AK GRN V Sbjct: 570 RADIEQLHVPFEGG-TIHVTASFGVACGIPDQYLSPQELLAHADKALYQAKHDGRNCVRS 628 Query: 258 FSDI 261 + I Sbjct: 629 VATI 632 >gi|88797308|ref|ZP_01112898.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Reinekea sp. MED297] gi|88780177|gb|EAR11362.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Reinekea sp. MED297] Length = 650 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 87/184 (47%), Gaps = 13/184 (7%) Query: 83 GYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFF 134 G++ G I+Y + + +LS+ D L+GL N LG Y + SI+ Sbjct: 468 GHVIGYTATANDITYQKEVERLSQTDPLTGLANRMKLDLELGREWARFYRYQQHFSIIIV 527 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+D+FK IND +GH GD V+ +D L + T +GR GGEEF + A + Sbjct: 528 DLDHFKTINDQYGHQEGDLVLKKAADVLSSLLRTTDIIGRWGGEEFLILLPQTDADTAYL 587 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 +A LR + + S P T S G A +I AD+ALY AK SGRN Sbjct: 588 VAEKLRAGLPLIEGLRSPAP----TGSFGTASTSVFTSSAEDLIRAADRALYQAKASGRN 643 Query: 254 RVVC 257 RV+ Sbjct: 644 RVMV 647 >gi|297582609|ref|YP_003698389.1| diguanylate cyclase [Bacillus selenitireducens MLS10] gi|297141066|gb|ADH97823.1| diguanylate cyclase [Bacillus selenitireducens MLS10] Length = 534 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 9/160 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N + L +K S ++ DID FK+IND FGH GD V+ Sbjct: 375 LANTDQLTGLFNRHYMMKQLEDNRQKGSGFKQPAILILLDIDRFKRINDEFGHQTGDAVL 434 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + L + G+ R GGEEF G ++ E A +R IE S G S Sbjct: 435 SETGALLHKLAGSHGTAARWGGEEFVLYLPGYAKAEGTAFAEQVRSAIETHA--YSKGLS 492 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +I E I ++ RAD +Y AK++GRN V Sbjct: 493 VTASIGVSSTEDPDTPHIDALVQRADHKMYEAKEAGRNLV 532 >gi|225849752|ref|YP_002729986.1| signal transduction response regulator [Persephonella marina EX-H1] gi|225646225|gb|ACO04411.1| signal transduction response regulator [Persephonella marina EX-H1] Length = 683 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N F +S N K S++ D+D FK IND +GH +GD V+ ++ Sbjct: 270 DPLTDLYNRRIFEDLLKYEVSRAKRKNYKFSLILIDLDNFKYINDTYGHHIGDIVLKSVA 329 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D L V R+GG+EF + ++A I+A +RK +EN+++ I G I ++ Sbjct: 330 DILEASIRDGDLVARIGGDEFVILLSETELEKALIVAERIRKNLENNKLCIFEGAVISVS 389 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+ E H ++ D ALY AK G+N+V Sbjct: 390 ASLGVVEFPTHGTTKEELMMVVDNALYRAKDLGKNKV 426 >gi|218462597|ref|ZP_03502688.1| putative two-component response regulator protein [Rhizobium etli Kim 5] Length = 430 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 11/178 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDN 145 EL + R+ +L+R D L+G+ N + +L G ++++ DID+FK +NDN Sbjct: 239 ELADANARLERLARTDPLTGIANRRWMMETLESLWRHGRETGIVAMLMCDIDHFKALNDN 298 Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+ + ++ + V V R GGEEF E++A +A +R+ +E Sbjct: 299 LGHGEGDRCLVKIAGIIQSCVRADRDLVSRHGGEEFLIVLPDVEEEDAVAVAKRIRESVE 358 Query: 205 NSQI-NISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCF 258 + + N SS +T+S G+A + + ++ + + AD ALY AK++GRN+V F Sbjct: 359 AAALPNPSSSVGPSVTLSVGVAFKSAVDTGVSLADLQHEADMALYRAKEAGRNQVSVF 416 >gi|157144712|ref|YP_001452031.1| hypothetical protein CKO_00438 [Citrobacter koseri ATCC BAA-895] gi|157081917|gb|ABV11595.1| hypothetical protein CKO_00438 [Citrobacter koseri ATCC BAA-895] Length = 520 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 8/155 (5%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL+N A L Y + +++ DID FK +ND FGH +GD + L+ L Sbjct: 369 DPLTGLVNRRAAEKLLAEYEHQQRQFAVISLDIDRFKAVNDTFGHDIGDVTLKALAQLLK 428 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 R+GGEEF +S + AA +A LRK + ++I HITIS G Sbjct: 429 RSCRKNDTACRMGGEEFMMFFPETSVEAAADIAERLRKEVAAAKIETVG----HITISLG 484 Query: 224 IA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + +S + RAD+ +Y AK++GRN+VV Sbjct: 485 VTVWPSGVDSVSQALKRADELMYQAKQAGRNQVVA 519 >gi|146310517|ref|YP_001175591.1| diguanylate cyclase AdrA [Enterobacter sp. 638] gi|145317393|gb|ABP59540.1| diguanylate cyclase [Enterobacter sp. 638] Length = 371 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 26/223 (11%) Query: 48 IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107 I L G TP + L + + LSL ++ + L+ ++S L R+ +S D Sbjct: 156 ITLQLTGTTPAFTLTPLELW-LSLPVL-VLYPLIFAWVSHQTAIRLAEHKRRLELMSTRD 213 Query: 108 CLSGLLNHSAF-ISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 ++G+ N + I Y+ L +I+ DID+FK IND +GH VGD+ I ++ Sbjct: 214 GMTGVFNRRHWEILLRNEYDACLRGHRDAAILIIDIDHFKDINDTWGHDVGDEAIIAVTR 273 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHIT 219 QL + +GR GG+EFA G+ E+AI A + ++ E + + + P + + Sbjct: 274 QLQLTLRAGDLIGRFGGDEFAVVMSGTP-AESAIAA--MSRVHERLAALTLPCAPQVRLR 330 Query: 220 ISAGIAERCHKEPISTII--YR-----ADQALYVAKKSGRNRV 255 IS G+A P++ YR AD ALY AK +GRNR Sbjct: 331 ISVGVA------PLTPEFGHYREWLKAADVALYKAKNAGRNRT 367 >gi|150019427|ref|YP_001311681.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] gi|149905892|gb|ABR36725.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] Length = 360 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 10/204 (4%) Query: 63 YILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 YI+VE+ ++I + L L I+ +I E + Y + ++++ D L G+ N F Sbjct: 152 YIVVEHNLYKFMNIELKLFLRSIANQIAIAIENSLLYKELEKINQRDPLLGIYNRKYFFE 211 Query: 121 SLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 L N+K +IV DID FK++ND +GH GDK++ ++ + R Sbjct: 212 FLEKKENRKLNDKFAIVMIDIDDFKKVNDTYGHQFGDKILVNTANIIKCGIDKNDIFARY 271 Query: 176 GGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPI 233 GGEEF +SE +R+ IE S+IN +G IT S GI+ + + Sbjct: 272 GGEEFILYISDFTSEDNVYSKIEAIRRTIEGSKINF-NGRDESITASFGISFFPLNGTDL 330 Query: 234 STIIYRADQALYVAKKSGRNRVVC 257 + +I +AD LY AKKSG+NRV+ Sbjct: 331 NELISKADDLLYKAKKSGKNRVLS 354 >gi|327393791|dbj|BAK11213.1| diguanylate cyclase YdaM [Pantoea ananatis AJ13355] Length = 524 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 89/185 (48%), Gaps = 16/185 (8%) Query: 84 YISGSILKELFISY-NRISQLSRI-------DCLSGLLNHSAFISSLGSY---NEKLSIV 132 Y LK+ F++Y N I++ I D L+ L N F Y + S+ Sbjct: 335 YKESDRLKKSFLAYSNTINKTLAILRDDAITDHLTKLYNRRGFEQLTAPYLSAKNEHSLA 394 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 FDIDYFK+IND++GH +GDK + ++ L T V R GGEEF + EA Sbjct: 395 SFDIDYFKRINDHYGHDIGDKTLVAVAMFLKKGCRTNDIVCRFGGEEFVVFFPNTQISEA 454 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSG 251 +AN +R+ I +Q + +TISAG+ H I + DQ LY AK G Sbjct: 455 ESIANRIREHIACAQFSEVG----KMTISAGVESLAHHNNDIEETLLSVDQWLYQAKHEG 510 Query: 252 RNRVV 256 RNRVV Sbjct: 511 RNRVV 515 >gi|209546887|ref|YP_002278805.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538131|gb|ACI58065.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 435 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 12/179 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEK-----LSIVFFDIDYFKQIND 144 EL + R+ +L+R D L+G+ N + +L N++ +++ DID+FK +ND Sbjct: 239 ELADANARLERLARTDPLTGIANRRWMMETLEGLWRNDRETGVVAAMLMCDIDHFKALND 298 Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH GD+ + ++ + V V R GGEEF E EA +A +R+ + Sbjct: 299 KLGHGEGDRCLVKVAGIIQSCVRADRDLVSRHGGEEFLIVLPDVDEDEAIAVAKRIRESV 358 Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCF 258 E + + N SSG +T+S G+A + + ++ + + AD ALY AK++GRN+V F Sbjct: 359 EAAALPNPSSGVGPSVTLSVGVALKSALDADISLANLQHEADMALYRAKEAGRNQVCVF 417 >gi|157962792|ref|YP_001502826.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157847792|gb|ABV88291.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 518 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 86/182 (47%), Gaps = 12/182 (6%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134 LG + S + LF +L+ +D L+ L N SA + + L + Sbjct: 339 LGKETDSYKERLFEQ----QKLNLLDSLTQLPNRSALEERMDIEYRNYKRTKQPLWVAVA 394 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK IND+FGH GDK + ++ L FV R GGEEF +E + Sbjct: 395 DIDHFKTINDSFGHSTGDKTLQVIAMALKNALRESEFVARYGGEEFVLLLPNVAESDIQP 454 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L N +R+ +++ + I +T+S G A+ E I+ RAD ALY AK R+R Sbjct: 455 LLNRVREKVKSIPFKFKNQ-RITVTVSIGAAQIIENELITETFDRADAALYKAKNESRDR 513 Query: 255 VV 256 V+ Sbjct: 514 VI 515 >gi|332525874|ref|ZP_08402015.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2] gi|332109425|gb|EGJ10348.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2] Length = 364 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 80/172 (46%), Gaps = 10/172 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL + RI L+ D L+GLLN A + L + L + D+D FKQIND Sbjct: 186 ELSQALERIRLLATRDTLTGLLNRRAAMDELRRAAGQAARHERPLVVALVDLDRFKQIND 245 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+V+ +D V R GGEEF +SE EA R + Sbjct: 246 GHGHQTGDRVLQAFADVAQRELRAEDCVSRWGGEEFLFILPDTSEDEACACLE--RVLAV 303 Query: 205 NSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++I + P+ I SAG+A + I RAD+A+Y AK +GR R+ Sbjct: 304 CAEIIVDGLPTNWRIGFSAGVARCLGPADLEPAIERADRAMYRAKLAGRGRI 355 >gi|297579923|ref|ZP_06941850.1| predicted protein [Vibrio cholerae RC385] gi|297535569|gb|EFH74403.1| predicted protein [Vibrio cholerae RC385] Length = 461 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 7/158 (4%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 LS D L+ + N F+ L + + ++++ FD+D FK INDNFGH +GD+VI F++ Sbjct: 301 LSNTDSLTNIHNRRYFMMQLNNIQKTQCGITLIIFDLDNFKSINDNFGHDLGDQVIQFVA 360 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-I 218 Q + + R+GGEEFA A + + A A L I + ++ P + + Sbjct: 361 RQAKELISNDQTIARIGGEEFAVIACFPTVETAENFAQTLVTTIREQ--SRATFPQLGLV 418 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G+A K S + AD ALY AK +G+++VV Sbjct: 419 TVSIGLA-YYPKPQESYDLVSADNALYQAKNAGKDQVV 455 >gi|148545852|ref|YP_001265954.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas putida F1] gi|148509910|gb|ABQ76770.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas putida F1] Length = 451 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S + E+ LS DID+FK+IND GHP+GD+VI L+ Sbjct: 292 DSLTGLYNHTHILQLLEDCSFRARREQHPLSFAMLDIDHFKKINDRHGHPMGDRVIKSLA 351 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 L F+GR GGEEFA ++ A + +++R+ + I + P + Sbjct: 352 LFLKQRLRKTDFIGRYGGEEFAIVMPNTALDAAHKVLDEIRRRFAD--ILYPAQPRDLQC 409 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T SAG+ + T+ AD+ALY AK +GRN VV Sbjct: 410 TFSAGVVQLDEGLDALTMASAADEALYRAKHAGRNCVV 447 >gi|300855785|ref|YP_003780769.1| GGDEF domain-containing protein [Clostridium ljungdahlii DSM 13528] gi|300435900|gb|ADK15667.1| GGDEF domain containing protein [Clostridium ljungdahlii DSM 13528] Length = 570 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 7/159 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 + ++ L + + + G+LN I + E SI+ FD+DYFK INDN+GH GDKV+ Sbjct: 418 DDLTGLYKRNYIEGILNE--VIKKYINEGEIFSIMMFDVDYFKLINDNYGHLQGDKVLTD 475 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +S + G + GR GGEEF L +++QE + ++ + I N I Sbjct: 476 ISKVITECIGDTGYAGRYGGEEF-IVILPNTKQEGLV---EIGERIRNKINTFPWEDGIK 531 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +TIS G+ E + I D LY AK SGRN++V Sbjct: 532 VTISGGLYENKSNTNMECIKI-VDDLLYEAKNSGRNKIV 569 >gi|298493108|ref|YP_003723285.1| response regulator receiver modulated diguanylate cyclase ['Nostoc azollae' 0708] gi|298235026|gb|ADI66162.1| response regulator receiver modulated diguanylate cyclase ['Nostoc azollae' 0708] Length = 338 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 11/162 (6%) Query: 106 IDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G+ N F L S ++L S++ D+D+FK ND +GH GD + + Sbjct: 171 LDGLTGVANRRKFDEYLNSEWQRLAREKLPLSLLLCDVDFFKNYNDTYGHLTGDDCLKQI 230 Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI 216 + L + P + R GGEEFA ++++ A LA D+R+ + N +I + S Sbjct: 231 AKTLKLSVRRPSDLLARYGGEEFAVILSNTNDKVAIYLAEDIRQKVYNLKIPHAQSKVDN 290 Query: 217 HITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 ++T+S G+A I+ T+I DQALY AK GRNR+V Sbjct: 291 YVTLSIGVATIFPNMQIAPNTLIEVGDQALYTAKAQGRNRIV 332 >gi|218781542|ref|YP_002432860.1| diguanylate cyclase with PAS/PAC sensor [Desulfatibacillum alkenivorans AK-01] gi|218762926|gb|ACL05392.1| diguanylate cyclase with PAS/PAC sensor [Desulfatibacillum alkenivorans AK-01] Length = 299 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 7/161 (4%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QL ID L+ L N F++ Y+ ++F D+D+FK +ND FGH VGD Sbjct: 134 LEQLVLIDNLTMLSNRRHVEAELDRFLTEKQRYDLSFGVLFLDLDHFKNVNDTFGHNVGD 193 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ + L GR GGEEF L +R ++ + IN Sbjct: 194 LVLKTVGATLKSCARPYDTFGRWGGEEFIGLIRNIDAPNLRGLGERIRGLVAATMINTPC 253 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G ++ +T S G ++ + +II RAD+ LY +K SGRN Sbjct: 254 GKTLQVTASIGGTTARQEDDMESIIARADKNLYCSKNSGRN 294 >gi|222112641|ref|YP_002554905.1| diguanylate cyclase [Acidovorax ebreus TPSY] gi|221732085|gb|ACM34905.1| diguanylate cyclase [Acidovorax ebreus TPSY] Length = 395 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL+N + I +L E +++ DID+FK +ND+ GH GD V+ ++ Sbjct: 222 DALTGLVNRRSLIMALERDVARAVRLREPYAVMLVDIDHFKFVNDSHGHLAGDSVLRHVA 281 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D L VGR GGEEF + A LA LR+ +E + G I +T Sbjct: 282 DLLRTRLRAQDLVGRYGGEEFMVLLPHTPLGGALELAETLRRAVERLPC-VGGGKDIPVT 340 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+ + ++ AD+ALY AK +GRNRV Sbjct: 341 VSIGVCGGPLQPADGWDRLVQGADEALYAAKLAGRNRV 378 >gi|212639310|ref|YP_002315830.1| diguanylate cyclase/phosphodiesterase [Anoxybacillus flavithermus WK1] gi|212560790|gb|ACJ33845.1| Multidomain signal transduction protein, diguanylate cyclase/phosphodiesterase (contains GGDEF and HD-GYP domains) [Anoxybacillus flavithermus WK1] Length = 609 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 22/199 (11%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNE-- 127 +V++SIT +L + Y ++ D L+GL NH F L + E Sbjct: 213 VVLLSITFGKVLEW------------YQEMANQVNKDYLTGLYNHGYFKDYLKELFRETK 260 Query: 128 ----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAA 182 + SI F D+D FK+ ND GH GD+++ F+ + L V R GGEEFA Sbjct: 261 KTGGQFSIAFLDLDDFKKYNDYHGHVQGDRLLKFVGEFLRNETKDLGCIVARYGGEEFAI 320 Query: 183 AALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRA 240 A ++ EA + LRK + ++ + + P I+ S G+AE S ++++A Sbjct: 321 ALPRLTKHEAVAFMDQLRKKLNDTPFDGVDRLPYRCISFSCGVAEYESDMYEESELLHKA 380 Query: 241 DQALYVAKKSGRNRVVCFS 259 DQALY +K G+N V + Sbjct: 381 DQALYYSKAQGKNNVQLYD 399 >gi|163783099|ref|ZP_02178094.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) [Hydrogenivirga sp. 128-5-R1-1] gi|159881779|gb|EDP75288.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) [Hydrogenivirga sp. 128-5-R1-1] Length = 218 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAFISSLG-SYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N ++ L +N LS+ D+D FK IND +GH GD+V+ L+ Sbjct: 64 DPLTGLPNRREIMNFLDFEFNRAKRNGTPLSVAVIDLDDFKFINDTYGHVAGDEVLKSLA 123 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + VGR GGEEF + A + LR+++E + P ++ Sbjct: 124 SLIRRNLRSTDMVGRFGGEEFVVVMPDTPLNTAVKVMERLRRVVEETYFE----PIGSVS 179 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IS G+A+ + +S ++ RAD LY AK+ G+NRV+ Sbjct: 180 ISVGVAQLREGDDVSNLLSRADGKLYQAKREGKNRVLA 217 >gi|316940010|gb|ADU74044.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM 1313] Length = 559 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 13/167 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y R+ +++ ID L+G+ N F L N LS+ DID+FK+ ND FGH Sbjct: 390 YQRMHEMATIDSLTGIYNRLYFQERLREEFANAKKENYDLSLAIMDIDHFKRFNDTFGHL 449 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKV+ ++ + + + R GGEEF +S +EA LR I+ + I Sbjct: 450 FGDKVLKHIAHLMKKSLRSGDIIARYGGEEFVILLPRTSVKEAYDKVERLRNIVAKTTIK 509 Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253 +T+S G++ E + E S ++ AD ALY AK+SGRN Sbjct: 510 -DELVEASVTVSFGVSSYPEFANTE--SELLKTADNALYDAKESGRN 553 >gi|24373687|ref|NP_717730.1| response regulator [Shewanella oneidensis MR-1] gi|24348043|gb|AAN55174.1|AE015654_11 response regulator [Shewanella oneidensis MR-1] Length = 544 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNH+ I+ N + I D+D+FKQ+ND +GH GDKV+ + Sbjct: 384 DSLTGLLNHTQILVAARHCINLAKRANSSVCIAMLDLDHFKQVNDTYGHSGGDKVLLAFA 443 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L F+GR GGEEF N +R+ N + + G +T Sbjct: 444 HLLQQSLRAADFMGRYGGEEFMLVIPDMPAPLVIAKVNAIRESFSNI-VFVEEGAEFKVT 502 Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+A CH+ + AD+ LY AK++GRNR++ Sbjct: 503 LSGGLAFSTECHE--FQECLLLADKNLYEAKRTGRNRII 539 >gi|78048527|ref|YP_364702.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036957|emb|CAJ24657.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 375 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N AF +L + E+ LS+ D+D+FK +ND GH GD V+ Sbjct: 219 TRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLR 278 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 LS L + R GGEEF + +A + LR+ + I ++ Sbjct: 279 ELSALLRAHMAGAGTIARYGGEEFVLLLPNTDLLQARVQCEYLRQSVAAMTI------AL 332 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +T+S G+A +E + +I RADQALY AK+ GR++VV Sbjct: 333 PVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE 375 >gi|329936157|ref|ZP_08285950.1| hypothetical protein SGM_1442 [Streptomyces griseoaurantiacus M045] gi|329304267|gb|EGG48147.1| hypothetical protein SGM_1442 [Streptomyces griseoaurantiacus M045] Length = 215 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +R +R D L+GL F + + + +V D+D FK IND FGH GD ++ Sbjct: 26 HRCLNTARRDPLTGLRTRDGFTRRATALLRDPRAVVVLADVDRFKHINDTFGHAAGDALL 85 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAAL--GSSEQEAAILANDLRKIIENSQINISSG 213 +D+L G GRLGG+EFAA L G++ A+L L + + Sbjct: 86 KATADRLAHHVGRTGVAGRLGGDEFAAVLLDDGTAADTLAVLHAVLARSVGGQD------ 139 Query: 214 PSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKS 250 P++ T+S G E + T++ RAD+A+Y AK+S Sbjct: 140 PAVRTTVSLGWVRAADFPGEQLPTLLRRADEAMYAAKQS 178 >gi|289650648|ref|ZP_06481991.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 420 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 194 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 243 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 244 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 303 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + E +R+ I N +I N S P S+ + Sbjct: 304 EEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAGSVSV 363 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 364 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 410 >gi|91223416|ref|ZP_01258681.1| putative GGDEF family protein [Vibrio alginolyticus 12G01] gi|91191502|gb|EAS77766.1| putative GGDEF family protein [Vibrio alginolyticus 12G01] Length = 306 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 8/167 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + S+ID L+ + N F L N +++ FD+D+FK IND GH GD Sbjct: 137 LRHQSQIDALTNIYNRRVFFEKLTEEVIKAQEPNYHSALLLFDLDFFKVINDKRGHDAGD 196 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+D + + R+GGEEFA +S A + ++R I+N Q Sbjct: 197 YVLETLADLVSHLLVKDEIFARVGGEEFAIILPETSLSAAKEVGEEVRSHIQNCQFEFEK 256 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I +T+S G+ E E + AD+ALY AK++GRN V Sbjct: 257 -IEIPVTVSVGVVEIGRNETTKRLYAHADKALYAAKRNGRNCVATLD 302 >gi|52141448|ref|YP_085381.1| sensory box/GGDEF family protein [Bacillus cereus E33L] gi|118479248|ref|YP_896399.1| sensory box/GGDEF family protein [Bacillus thuringiensis str. Al Hakam] gi|229093102|ref|ZP_04224224.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-42] gi|51974917|gb|AAU16467.1| possible sensory box/GGDEF family protein [Bacillus cereus E33L] gi|118418473|gb|ABK86892.1| sensory box/GGDEF family protein [Bacillus thuringiensis str. Al Hakam] gi|228690251|gb|EEL44044.1| Sensory box/GGDEF family protein [Bacillus cereus Rock3-42] Length = 431 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + NE ++++ FDID FK +ND +GH Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 321 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 322 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 380 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 381 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 426 >gi|15641607|ref|NP_231239.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153818146|ref|ZP_01970813.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|227081752|ref|YP_002810303.1| GGDEF family protein [Vibrio cholerae M66-2] gi|229508456|ref|ZP_04397959.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229511472|ref|ZP_04400951.1| GGDEF family protein [Vibrio cholerae B33] gi|229518612|ref|ZP_04408055.1| GGDEF family protein [Vibrio cholerae RC9] gi|229607863|ref|YP_002878511.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254848717|ref|ZP_05238067.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255744969|ref|ZP_05418919.1| GGDEF domain protein [Vibrio cholera CIRS 101] gi|262161745|ref|ZP_06030763.1| GGDEF domain protein [Vibrio cholerae INDRE 91/1] gi|298498318|ref|ZP_07008125.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|9656110|gb|AAF94753.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126511332|gb|EAZ73926.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|227009640|gb|ACP05852.1| GGDEF family protein [Vibrio cholerae M66-2] gi|229343301|gb|EEO08276.1| GGDEF family protein [Vibrio cholerae RC9] gi|229351437|gb|EEO16378.1| GGDEF family protein [Vibrio cholerae B33] gi|229354410|gb|EEO19333.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229370518|gb|ACQ60941.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254844422|gb|EET22836.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255737440|gb|EET92835.1| GGDEF domain protein [Vibrio cholera CIRS 101] gi|262028477|gb|EEY47132.1| GGDEF domain protein [Vibrio cholerae INDRE 91/1] gi|297542651|gb|EFH78701.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 353 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 7/172 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152 N + L+ D L+G N + +S + L ++ D+D+FK IND FGH GD Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGD 232 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + V G R+GGEEF S ++A + LR I+ Sbjct: 233 KVLIETTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCEHLRAIVSQHLFAFRE 291 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + +TIS G+ E + ++ ++ AD LY AKK+GRN+V F N Sbjct: 292 -KRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342 >gi|308125816|ref|ZP_07663530.1| response regulator [Vibrio parahaemolyticus K5030] gi|308111537|gb|EFO49077.1| response regulator [Vibrio parahaemolyticus K5030] Length = 404 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 11/162 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157 +RID L+ LN +A I ++ S K + D+D FK IND +GHP GD V+ Sbjct: 229 ARIDSLTCALNRTAIIETIKSQTSKTHQEMRYVLALIDLDNFKAINDTYGHPTGDLVLKH 288 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + + V ++GRLGGEEF E + L K I QI + Sbjct: 289 VCQSIRVKLNKGEYIGRLGGEEFVLLLKNVDEIDVPFRVQSLHKTISEKQIKTERNEDLR 348 Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256 +T A +A P++ +Y DQALY AK++G+N VV Sbjct: 349 VT--ASLAYLSTSMPLTNFDELYSILDQALYQAKRNGKNAVV 388 >gi|125973797|ref|YP_001037707.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum ATCC 27405] gi|125714022|gb|ABN52514.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum ATCC 27405] Length = 550 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 13/167 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y R+ +++ ID L+G+ N F L N LS+ DID+FK+ ND FGH Sbjct: 381 YQRMHEMATIDSLTGIYNRLYFQERLREEFANAKKENYDLSLAIMDIDHFKRFNDTFGHL 440 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKV+ ++ + + + R GGEEF +S +EA LR I+ + I Sbjct: 441 FGDKVLKHIAHLMKKSLRSGDIIARYGGEEFVILLPRTSVKEAYDKVERLRNIVAKTTIK 500 Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253 +T+S G++ E + E S ++ AD ALY AK+SGRN Sbjct: 501 -DELVEASVTVSFGVSSYPEFANTE--SELLKTADNALYDAKESGRN 544 >gi|78484545|ref|YP_390470.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78362831|gb|ABB40796.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] Length = 352 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ + N AF S + L ++ DID+FK+ ND FGH VGD V+ + Sbjct: 179 TDELTEVGNRKAFNNAIQDLADSTQDNPQSLVLILTDIDHFKRFNDTFGHLVGDSVLRYF 238 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-- 216 ++ + V R GGEEFA SS ++A A +R +E +++ Sbjct: 239 ANLMKKTRDDTETVCRYGGEEFAILLSHSSLEKAKERAESIRHSLETAKLKRKDSEKTLG 298 Query: 217 HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 IT S G+A + E I I RAD ALY AK GRNR++ ++E Sbjct: 299 KITASFGVAVYKGEDHETIDDWIKRADDALYEAKNQGRNRIITDEELE 346 >gi|113968657|ref|YP_732450.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113883341|gb|ABI37393.1| diguanylate cyclase [Shewanella sp. MR-4] Length = 577 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 12/238 (5%) Query: 25 HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84 H YF + S+F+A F +FY G F L V + +++ ++ ++L++ Y Sbjct: 330 HPIAKYFLLGHSLFVA---FSGLAVMFYKGRAEFNYLSSHGV-GVGIMLEALVLALIIAY 385 Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 +L+E+ S + + D L+ L N F + + ++++ DID Sbjct: 386 -RIRLLEEIKASQEELKYQAATDSLTQLFNRGHFHKEAQRVYTQASIAQQPMAVIICDID 444 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK++ND +GH +GD+VI ++ L V R GGEEF S EA + A Sbjct: 445 LFKRVNDKYGHLMGDRVIIDIATTLKQHARKCDLVARYGGEEFIMLLHNVSLTEAHLCAE 504 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R + + +T+S G+A P+ I AD ALY AK GRN V Sbjct: 505 RIRSAVAALNFTAETQEVFTVTLSLGVATVDFDHPLEHAIKLADDALYCAKHQGRNNV 562 >gi|325928730|ref|ZP_08189900.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] gi|325540898|gb|EGD12470.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] Length = 309 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 15/196 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119 + +S +++++ ++L +GY +++ + + +L+ +D L+GL N I Sbjct: 118 QGVSTIVVTL-VTLAVGYAFSLRMQDDRV---HLEELASLDALTGLPNRRMLERALTHQI 173 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ S++ D+D+FK++ND +GH GD ++ L+ L P V R GGEE Sbjct: 174 DQRQPHDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVREPHQVFRFGGEE 233 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F S E LRK+I N GP IT+S G A + R Sbjct: 234 FVVLLRAGSLAELEAATERLRKVIRNGL----RGPGGRITVSLGAARHDGETHWQDWFSR 289 Query: 240 ADQALYVAKKSGRNRV 255 AD ALY+AK GR+ V Sbjct: 290 ADAALYLAKNGGRDSV 305 >gi|313499416|gb|ADR60782.1| GAF domain/GGDEF domain-containing protein [Pseudomonas putida BIRD-1] Length = 326 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 12/189 (6%) Query: 79 SLLLGYIS----GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEK-- 128 +L GY+ + + L + +R + + +D L+ L N A + L E+ Sbjct: 133 TLTEGYLQLRSLAQVNRALRVEMDRGQRRALLDPLTQLWNRGALAAFQNRELRLAEERGL 192 Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 L V+ D+D FK +ND GH GD+V+ + +L + R GGEEF A Sbjct: 193 QLGTVYADLDRFKSVNDEHGHDAGDRVLCECARRLRATLRPDDLLVRQGGEEFVALLRVK 252 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 QE A +A LR+ I ++ + G + +T+S G A E I I RAD LY A Sbjct: 253 DSQELAQIAERLRQSIGSAPFLLPGG-TRKMTMSIGCALLTQGEQIDDAIKRADGGLYAA 311 Query: 248 KKSGRNRVV 256 K GR++VV Sbjct: 312 KHGGRDQVV 320 >gi|304408387|ref|ZP_07390034.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] gi|304342676|gb|EFM08523.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] Length = 397 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 12/159 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 I Q S D L+ L N F S + + ++I+F DID FK++ND GH D V+ Sbjct: 228 IHQSSITDGLTTLYNRKYFNSRCEKWMRERGSVTIIFCDIDNFKRLNDTQGHHAADGVLK 287 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +++ + G GR GGEE A G ++ +A +A +R+ +E I Sbjct: 288 KVAEIIKEESGAIGAAGRYGGEELLAVIRGDAKVKAEDVAETIRRRVETETI-------- 339 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +TIS G++ + I +I AD+A+YV+K +G+N+V Sbjct: 340 -VTISVGVSTSVSGQSIQEVIKEADEAMYVSKTTGKNKV 377 >gi|260776052|ref|ZP_05884947.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260607275|gb|EEX33540.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 323 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 21/183 (11%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLS----IVFFDIDYFKQI 142 +++ +Y + S D L+GLLN L S N+ + D+D FK I Sbjct: 130 KIYRNYLMVLHESERDKLTGLLNRKTLEERLSHCFNLSVNQDSGLYAWVAIIDLDLFKSI 189 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RK 201 ND +GH +GD+V+ S QL F + R GGEEF L E++ + +L R+ Sbjct: 190 NDTYGHMIGDEVLLMFSQQLQNFFSGSEQLFRFGGEEF-VVLLPPQEKKQVLKELELFRR 248 Query: 202 IIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 IE+ Q+N ++T S G+ E + TI+ AD ALY AK+ GRNR+ C+ Sbjct: 249 HIESFRFPQVN-------NMTFSCGVCAISRHEYLPTILGHADVALYSAKEHGRNRIECY 301 Query: 259 SDI 261 D+ Sbjct: 302 EDL 304 >gi|271502108|ref|YP_003335134.1| diguanylate cyclase [Dickeya dadantii Ech586] gi|270345663|gb|ACZ78428.1| diguanylate cyclase [Dickeya dadantii Ech586] Length = 381 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 12/191 (6%) Query: 72 VIISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLG-----SY 125 V+ + ISLL+ I GS+L Y + +R D L+G+L AF +Y Sbjct: 171 VVTLVCISLLIA-IMGSLLSLFTKKYLIELPATARYDDLTGVLRRDAFYQLANRALKVAY 229 Query: 126 NEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 E L + DID+FKQ+ND +GH GDK + ++D + F + RLGG+EFA Sbjct: 230 QEDKPLCAMLIDIDHFKQVNDTWGHAAGDKTLKTIADIIRHSFRNRDIICRLGGDEFAVV 289 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQ 242 G + + A +A +R+ I N +S P I ++I +A E + II RAD Sbjct: 290 LPGITLENAMRVAERVREGIHEFGYNATSVAPGITVSIGL-VAAELPDERLDEIIRRADV 348 Query: 243 ALYVAKKSGRN 253 LY AK+S RN Sbjct: 349 NLYQAKRS-RN 358 >gi|224368704|ref|YP_002602865.1| putative signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223691420|gb|ACN14703.1| putative signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 493 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 83/181 (45%), Gaps = 26/181 (14%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFFDIDYFKQINDNFGHPVG 151 ++ L+ ID L+GL N + L EK L++V DID+FK +ND GH G Sbjct: 312 QLEALTLIDYLTGLYNRKYYTERLKETLRICNREKRILAVVMMDIDHFKSVNDKHGHAAG 371 Query: 152 DKVIAFLSDQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE---- 204 D+ + + L F R GGEEF G++ AN++RK I+ Sbjct: 372 DECLRMIGQVLKTALKKTRPGDFAARYGGEEFVLIFSGANADWVEKKANEIRKTIQAQTV 431 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI---------STIIYRADQALYVAKKSGRNRV 255 N+ N I ITIS G A C K PI + RAD LY AK+ GRNRV Sbjct: 432 NTMNNREEKIEISITISMGFA--C-KGPIFDDEIMLSPEIMTRRADTMLYKAKQLGRNRV 488 Query: 256 V 256 V Sbjct: 489 V 489 >gi|153802398|ref|ZP_01956984.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|124122062|gb|EAY40805.1| GGDEF family protein [Vibrio cholerae MZO-3] Length = 353 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152 N + L+ D L+G N + +S + L ++ D+D+FK IND FGH GD Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGD 232 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + V G R+GGEEF S ++A + LR I+ SQ + Sbjct: 233 KVLIETTRLFAQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289 Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + +TIS G+ E + ++ ++ AD LY AKK+GRN+V F N Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342 >gi|49478505|ref|YP_038104.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330061|gb|AAT60707.1| possible sensory box/GGDEF family protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 431 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + NE ++++ FDID FK +ND +GH Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 321 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 322 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTLEKEAFQVAESLRFFIETKQF- 380 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 381 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCVY 426 >gi|88704424|ref|ZP_01102138.1| membrane protein containing GGDEF domain [Congregibacter litoralis KT71] gi|88701475|gb|EAQ98580.1| membrane protein containing GGDEF domain [Congregibacter litoralis KT71] Length = 399 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 14/190 (7%) Query: 82 LGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131 LG I+ S+ +L + +++ L+ ID L+GL N +L + LS+ Sbjct: 209 LGQITNSLRDRNLQLQEARRQLTDLANIDELTGLGNRRLVNQTLREEVNRARRSHGWLSV 268 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQ 190 V D+D+FK+ ND +GHP GD+V+ + D + V R GGEEF G+ Sbjct: 269 VLIDVDFFKKYNDTYGHPAGDEVLRRIGDIMQRATARAGEVAARYGGEEFILVLPGAKAA 328 Query: 191 EAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPIS--TIIYRADQALYVA 247 +A A L++++ I S+ S I+IS G+ E + ++ RAD ALY A Sbjct: 329 DALRTAERLKRLVYEENIPHSASEVSDRISISQGVLSIMPDEDVDPGVLVDRADAALYTA 388 Query: 248 KKSGRNRVVC 257 K+ GR+++ Sbjct: 389 KREGRDQIAV 398 >gi|330987588|gb|EGH85691.1| response regulator, putative/diguanylate cyclase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 551 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 14/159 (8%) Query: 107 DCLSGLLNHS---------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+GL NH+ +F S G + L DID+FK++ND+ GHP+GD+VI Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRRG--GKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKS 436 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-I 216 L+ L F+GR GGEEFA + Q A + +++R ++I+ + P+ + Sbjct: 437 LALFLKQRLRKTDFIGRYGGEEFAIVMPDTDIQSAHKVLDEIRHRF--AEIHYPAQPTDL 494 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRN+V Sbjct: 495 FCTFSAGVVSLGANDDSLSLASQADTALYCAKHAGRNQV 533 >gi|262164480|ref|ZP_06032218.1| sensory box/GGDEF family protein [Vibrio mimicus VM223] gi|262026860|gb|EEY45527.1| sensory box/GGDEF family protein [Vibrio mimicus VM223] Length = 308 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 85/171 (49%), Gaps = 13/171 (7%) Query: 98 NRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 ++ QL+ D L+ L N SAF + S + LS + DID FK IND+FGH Sbjct: 138 EQLYQLANTDALTQLCNRRKLWADFRSAFARAKHS-KQPLSCISIDIDNFKLINDHFGHD 196 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ FL+ + GR+GGEEF + A LA +R+ SQ + Sbjct: 197 KGDEVLCFLAQLFYELTSEHHICGRVGGEEFIIVLEDTPVATAFALAEQIRQRF--SQHS 254 Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 H+ + AG+A R + I R+DQALY AK+SGRNR ++ Sbjct: 255 FFEQKE-HVYLCAGVATMRLSDHDFTDIYRRSDQALYQAKRSGRNRCCIYN 304 >gi|262173404|ref|ZP_06041081.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451] gi|261890762|gb|EEY36749.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451] Length = 308 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 85/171 (49%), Gaps = 13/171 (7%) Query: 98 NRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 ++ QL+ D L+ L N SAF + S + LS + DID FK IND+FGH Sbjct: 138 EQLYQLANTDALTQLCNRRKLWADFRSAFARAKHS-KQPLSCISIDIDNFKLINDHFGHD 196 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ FL+ + GR+GGEEF + A LA +R+ SQ + Sbjct: 197 KGDEVLCFLAQLFYELTSEHHICGRVGGEEFIIVLEDTPVATAFALAEQIRQRF--SQHS 254 Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 H+ + AG+A R + I R+DQALY AK+SGRNR ++ Sbjct: 255 FFEQKE-HVYLCAGVATMRLSDHDFTDIYRRSDQALYQAKRSGRNRCCIYN 304 >gi|196038823|ref|ZP_03106131.1| putative sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] gi|196045818|ref|ZP_03113047.1| putative sensory box/GGDEF family protein [Bacillus cereus 03BB108] gi|196023258|gb|EDX61936.1| putative sensory box/GGDEF family protein [Bacillus cereus 03BB108] gi|196030546|gb|EDX69145.1| putative sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] Length = 430 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + NE ++++ FDID FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 321 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 425 >gi|146284369|ref|YP_001174522.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501] gi|145572574|gb|ABP81680.1| GGDEF domain protein [Pseudomonas stutzeri A1501] Length = 621 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 20/162 (12%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +A+ L Y L + D+D+FK++ND +GH GD+V+ + Sbjct: 464 DPLTGLPNRAAWNERLDLEFARWQRYGGDLLLAVLDVDHFKRVNDGYGHLAGDRVLKIIG 523 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------G 213 +L F+ R GGEEF L ++ EA R+++E + +I S G Sbjct: 524 TELQKRLRKTDFIARFGGEEF-VVLLPNTPYEAG------RQLMETLRDSIGSCPFHFKG 576 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+SAG+ + RAD+ALY AK SGRNRV Sbjct: 577 ERVAITLSAGLTAFVTGDTAERAFERADRALYRAKDSGRNRV 618 >gi|83594462|ref|YP_428214.1| diguanylate cyclase with GAF sensor [Rhodospirillum rubrum ATCC 11170] gi|83577376|gb|ABC23927.1| diguanylate cyclase with GAF sensor [Rhodospirillum rubrum ATCC 11170] Length = 493 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 13/168 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +++ + D L+GL N +F L + +++ DID FK IND FGH GD+V+ Sbjct: 308 LARTAATDPLTGLANRRSFEALATRLLENKPGSGTLLVIDIDLFKHINDCFGHAAGDEVL 367 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L+ V +GRLGGEEF A L EA +A+ L + + + S Sbjct: 368 RHLAIVGRSVLRDGDLIGRLGGEEF-AVLLQMDGPEAYAVADRLCQAVREMAVTAPSWEH 426 Query: 216 ----IHITISAGIAERCH-KEP---ISTIIYRADQALYVAKKSGRNRV 255 + ITIS GIA C ++P +S + RAD+ALY AKK GRN++ Sbjct: 427 SSVVVKITISIGIAHPCPFEDPKFALSEALRRADRALYGAKKRGRNQI 474 >gi|127512968|ref|YP_001094165.1| diguanylate cyclase [Shewanella loihica PV-4] gi|126638263|gb|ABO23906.1| diguanylate cyclase [Shewanella loihica PV-4] Length = 347 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N AF + + ++ S++ DID FKQ ND GH VGDKV+A+++ Sbjct: 187 DQLTSLRNRRAFDEEVLGHIQRFRREQRLSSLLLVDIDNFKQFNDTHGHLVGDKVLAYIA 246 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-- 217 L FV R GGEEF + A ++A LR I ++I + Sbjct: 247 LALKQGVKGDDFVARYGGEEFVILLPDTEHSGAMVVAEQLRARIAERHLSIGKDKKLSLG 306 Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 IT+S G+A + + + RAD+ALY AK +GRN Sbjct: 307 AITVSIGVATLRLDDDRESYLVRADEALYRAKSAGRN 343 >gi|303241729|ref|ZP_07328226.1| diguanylate cyclase with GAF sensor [Acetivibrio cellulolyticus CD2] gi|302590730|gb|EFL60481.1| diguanylate cyclase with GAF sensor [Acetivibrio cellulolyticus CD2] Length = 565 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 9/165 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149 Y R+ +L+ +D L+G+ N F L E LS+ FDID+FK+ ND FGH Sbjct: 390 YERMHELATVDSLTGVYNRLYFQERLQQEFENAQKNKYDLSLAIFDIDHFKRFNDTFGHL 449 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKV+ +SD L + + R GGEEF + +EA LR+ I + I Sbjct: 450 FGDKVLRHISDLLKNSLRSGDIIARYGGEEFVLLFPRTGLKEAYDKVEILREKIAKTTIR 509 Query: 210 ISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRN 253 + +T+S G++ S ++ AD ALY AK+SGRN Sbjct: 510 -DELVTASVTVSFGLSTYPEVSTTESDLLKMADNALYDAKESGRN 553 >gi|294339053|emb|CAZ87402.1| hypothetical protein; putative EAL, GGDEF and membrane domains [Thiomonas sp. 3As] Length = 801 Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 102/201 (50%), Gaps = 13/201 (6%) Query: 69 LSLVIISITISLLLGYISGSILKE---LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125 L+++ T+ + + S +++K+ L ++ + + + D L+GL N F+ L Sbjct: 167 LTVLAFGATLMMTVEGFSRALIKDNLRLTKAFKALRRFALRDELTGLANRRIFLDHLNEL 226 Query: 126 NEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ L+I D+D FK +ND GH +GD+++ + +L V + R GG+EF Sbjct: 227 MQRHPAQTLTIGLMDLDRFKSVNDRLGHIIGDQLLVAVGQRLRGVLREGDLLARFGGDEF 286 Query: 181 AAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STII 237 G S+EQ+ + +A L IE I G S+ I +S G+ + P+ T++ Sbjct: 287 VVLLPGYSTEQQLSYIAKRLVNCIEAP--FIIQGNSLQIGLSLGLVVQQPDAPVDAETLV 344 Query: 238 YRADQALYVAKKSGRNRVVCF 258 RAD A+Y AKK+GR + F Sbjct: 345 RRADMAMYAAKKNGRQQYRIF 365 >gi|289668230|ref|ZP_06489305.1| putative sensor protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 356 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N AF +L + E+ LS+ D+D+FK +ND GH GD V+ Sbjct: 200 TRTDPLTGLPNRRAFAVALAAATEQTRAVGQPLSVALLDVDHFKTVNDVHGHDQGDAVLR 259 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 LS L + R GGEEF + +A + LR+ + I ++ Sbjct: 260 ELSALLRAHMAGSGTIARYGGEEFVLLLPNTDLLQARVQCEYLRQSVAAMTI------AL 313 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +T+S G+A +E + +I RADQALY AK+ GR++VV Sbjct: 314 PVTVSIGVATLYPQESVEAVIKRADQALYAAKRGGRDQVVALE 356 >gi|229186289|ref|ZP_04313455.1| Sensory box/GGDEF family protein [Bacillus cereus BGSC 6E1] gi|228597189|gb|EEK54843.1| Sensory box/GGDEF family protein [Bacillus cereus BGSC 6E1] Length = 386 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + NE ++++ FDID FK +ND +GH Sbjct: 217 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 276 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 277 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 335 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 336 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 381 >gi|83312193|ref|YP_422457.1| hypothetical protein amb3094 [Magnetospirillum magneticum AMB-1] gi|82947034|dbj|BAE51898.1| Hypothetical protein ydeH [Magnetospirillum magneticum AMB-1] Length = 301 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 7/164 (4%) Query: 103 LSRIDCLSGLLNHSAFISSL-GSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVI 155 L+ +D L+GL N +S L G + + + DID FK++ND FGH GD+V+ Sbjct: 138 LATVDALTGLGNRQTMMSHLIGERDRAMRQKQPCCVALVDIDLFKKVNDTFGHTEGDRVL 197 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++ L + R GGEEF ++ + + +R I I ++G Sbjct: 198 RAVAESLRRNVRPYDVLYRYGGEEFLICLPAATPEAGRQVLERMRSAIAALGITSATGKP 257 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I IT + G+AE + + RAD ALY K++GRNRV +S Sbjct: 258 IPITATFGLAELSADLSVEESLDRADTALYDGKRAGRNRVAVWS 301 >gi|89099761|ref|ZP_01172634.1| hypothetical protein B14911_21668 [Bacillus sp. NRRL B-14911] gi|89085508|gb|EAR64636.1| hypothetical protein B14911_21668 [Bacillus sp. NRRL B-14911] Length = 677 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 8/174 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 +EL S ++ L+ D L+GL N + S+ + + + ++VF D+D+FK +ND G Sbjct: 235 QELVESNKHLNHLAYHDTLTGLPNRRKVMQSIEEWMAEDIQFAVVFIDLDHFKHVNDLLG 294 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENS 206 H +GD ++ ++ +L G+ VGRLGG+EF + + Q A+ + K++E Sbjct: 295 HNIGDDLLKKIASRLKENSGSEDIVGRLGGDEFIILKPVKENLQLDDFSADLIEKVVEPV 354 Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 QI I IT S GIA H + ++ I+ +AD A+Y +K GRN F+ Sbjct: 355 QI---LEHEIVITTSIGIALYPTHGKDVNDIMKKADIAMYNSKDKGRNTYFIFT 405 >gi|95930131|ref|ZP_01312870.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95133825|gb|EAT15485.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 521 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 19/199 (9%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128 S V++++ I +LL ++L+++ ++ ++S D L+GL N F++ Y EK Sbjct: 322 SFVLVAMAIIVLLTCYLFVSRRKLYLAQQKLMRISERDPLTGLYNRRKFMN----YYEKE 377 Query: 129 ----------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGG 177 L+++ DID+FK ND++GH GD + ++ + P R GG Sbjct: 378 WKAAQRSKTPLAVLMIDIDHFKDYNDHYGHLAGDVALTAVAGAIETRITRPRDCTARYGG 437 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPIST- 235 EEF + + AA +A +R +E Q+ + S + HIT+S GI + I+ Sbjct: 438 EEFIGLLPETDDLAAAQVAEKIRIQVEKLQVQHAYSATADHITVSIGITSLQEGDKINRM 497 Query: 236 -IIYRADQALYVAKKSGRN 253 +I AD+ALY AK++GRN Sbjct: 498 ELINLADKALYEAKEAGRN 516 >gi|116493518|ref|YP_805253.1| Signal transduction diguanylate cyclase [Pediococcus pentosaceus ATCC 25745] gi|116103668|gb|ABJ68811.1| Signal transduction diguanylate cyclase [Pediococcus pentosaceus ATCC 25745] Length = 400 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 18/224 (8%) Query: 50 LFYIGLTPFYGLEYILVENLSLV-IISITISLLLG----YISGSILKELFISYNRISQLS 104 L GL ++ L+ I +L++V II +T+ L+ + ++ + Y + Q Sbjct: 171 LIMFGLAWWFVLKDI--HHLTIVDIICLTLEFLIAMSIVHFGNKKVRMIMKQYLNLMQEV 228 Query: 105 RIDCLSGLLNHSAF------ISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+G+ N ++F + S N+ L++V FDID+FKQ ND +GH VGDKV+ Sbjct: 229 DTDALTGVYNRNSFNKVVKGVFEFYSNNDAPLTMVMFDIDHFKQFNDQYGHQVGDKVLRL 288 Query: 158 LSDQLVVVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 ++D+ G R+GGEEFA G + + + +R + I +++ Sbjct: 289 VADRFSYELVDRKAHGQLFRVGGEEFAIIFRGRTADDCEKIVRAIRDDLVKETIRVNNHD 348 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I I +S GI++ R T R D LY +K++ RN + Sbjct: 349 RIGIKVSIGISQLRDDDFDFQTFYKRVDDYLYQSKRNKRNSITV 392 >gi|307553968|gb|ADN46743.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli ABU 83972] gi|323956351|gb|EGB52094.1| diguanylate cyclase domain-containing protein [Escherichia coli H263] Length = 564 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132 LL Y+ ++ +++ + + + D L+ L N A ++ S++ Sbjct: 374 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCHTHQHPFSVI 433 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ +A Sbjct: 434 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 493 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250 A +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+AK++ Sbjct: 494 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 553 Query: 251 GRNRV 255 GRNRV Sbjct: 554 GRNRV 558 >gi|296282481|ref|ZP_06860479.1| diguanylate cyclase [Citromicrobium bathyomarinum JL354] Length = 400 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 114/253 (45%), Gaps = 25/253 (9%) Query: 23 SPHTFMIYFSIFFSIFIATVIF-IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81 SP M+Y + F + TV F I IF Y+G G EY N +IS T S + Sbjct: 146 SPINTMLY--VLF--LVLTVHFPIKAIFASYLGSGRTEG-EY---ANTLYAVISQTTSGV 197 Query: 82 LGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFIS-----SLGSYNEKLSIV 132 L +G ++ + + + LS D L+GL N A + +E + Sbjct: 198 LMVAAGLLIIINFLQSVVQNTQAQALS--DPLTGLPNRRAMDRWFDELAAAEADEPAVVA 255 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK ND FGH VGDKV+ ++ L + + RLGGEEF L E EA Sbjct: 256 VIDIDHFKTFNDRFGHDVGDKVLRAVATCLDRHRPSAARLARLGGEEFVLLLL-KDEAEA 314 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 + +R I ++ + +T+S G+A E + + RADQALY AK GR Sbjct: 315 LLTCESMRLAIS----RLTFAETDPVTVSIGLASALPGEAMGGPLRRADQALYRAKGLGR 370 Query: 253 NRVVCFSDIENNT 265 NR ++ T Sbjct: 371 NRCEVAPPVDGQT 383 >gi|296135291|ref|YP_003642533.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12] gi|295795413|gb|ADG30203.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12] Length = 451 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 9/166 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHP 149 ++ R+ + D L+G+L A + L + ++ L++ F D+D FKQIND GH Sbjct: 270 THARLLHRAERDALTGVLTRRAIMERLDTALARRTRDDMLALCFIDLDGFKQINDRLGHV 329 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+++ ++ + V +GR+GG+EF A + + A LA L ++ + + Sbjct: 330 RGDRLLVQVAHAMQDVLRRDDAIGRIGGDEFVALSAVADLSAAQSLAAKLVEVCAAAGYD 389 Query: 210 ISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNR 254 + SG + +T S G+ A H ++ RAD A+YVAK+ G+NR Sbjct: 390 LLSG--MRVTASIGVAAAPTHARSSFELLQRADDAMYVAKQQGKNR 433 >gi|241113169|ref|YP_002973004.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861377|gb|ACS59043.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 628 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 19/187 (10%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L +S ++ L+ D L+G++N AF + N S++ DID FK ND Sbjct: 440 LRLSAEQLKSLAETDGLTGMVNRRAFDEAFARETAGSARKNTPFSLLMVDIDRFKAYNDT 499 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GHP GD+ + +S L P V R GGEEF +S + A I+A +++ Sbjct: 500 YGHPAGDQCLRVVSRCLRQSVSRPADIVARYGGEEFVVLLPATSAKGAMIVAEQFARLLS 559 Query: 205 NSQINISSG-------PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + +G SI I+ + G R + + ++ AD ALY AK GRNR++ Sbjct: 560 QENI-VHTGSEFGRVTASIGISCATGATLRINP---NRLLSEADAALYDAKTQGRNRILA 615 Query: 258 FSDIENN 264 S E + Sbjct: 616 HSPEERH 622 >gi|121596403|ref|YP_988299.1| diguanylate cyclase [Acidovorax sp. JS42] gi|120608483|gb|ABM44223.1| diguanylate cyclase [Acidovorax sp. JS42] Length = 395 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL+N + I +L E +++ DID+FK +ND+ GH GD V+ ++ Sbjct: 222 DALTGLVNRRSLIMALERDVARAVRLREPYAVMLVDIDHFKFVNDSHGHLAGDSVLRHVA 281 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D L VGR GGEEF + A LA LR+ +E + G I +T Sbjct: 282 DLLRTRLRAQDLVGRYGGEEFMVLLPHTPLGGALELAETLRRAVERLPC-VGGGKEIPVT 340 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+ + ++ AD+ALY AK +GRNRV Sbjct: 341 VSIGVCGGPLQPADGWDRLVQGADEALYAAKLAGRNRV 378 >gi|26248226|ref|NP_754266.1| hypothetical protein c2374 [Escherichia coli CFT073] gi|237705915|ref|ZP_04536396.1| cellulose synthesis regulatory protein [Escherichia sp. 3_2_53FAA] gi|81476029|sp|Q8FGJ7|YEDQ_ECOL6 RecName: Full=Cellulose synthesis regulatory protein gi|26108630|gb|AAN80833.1|AE016762_86 Hypothetical protein yedQ [Escherichia coli CFT073] gi|226900672|gb|EEH86931.1| cellulose synthesis regulatory protein [Escherichia sp. 3_2_53FAA] Length = 569 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132 LL Y+ ++ +++ + + + D L+ L N A ++ S++ Sbjct: 379 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCHTHQHPFSVI 438 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ +A Sbjct: 439 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 498 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250 A +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+AK++ Sbjct: 499 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 558 Query: 251 GRNRV 255 GRNRV Sbjct: 559 GRNRV 563 >gi|219668908|ref|YP_002459343.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2] gi|219539168|gb|ACL20907.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2] Length = 534 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 11/168 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151 SYNR R+ L+N + + G +EK ++ FDIDYFK NDN GH G Sbjct: 368 SYNRYFFDERLQQEIDLVNR---LQAYGLESEKSVNNFGLIMFDIDYFKNYNDNNGHLAG 424 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ + + V + R GGEEFA +SE+ I A +RK +E+ Sbjct: 425 DELLQTIVTVVKGVLYPTDILCRYGGEEFAVICCHTSEKGFEIAAEKIRKAVEDYDFRFQ 484 Query: 212 SG-PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 P ++T+S G A C ++ +I RAD LY+AK +GRN+VV Sbjct: 485 DKQPGGNLTVSIG-AAYCSTPNVNKKDLITRADNYLYLAKSTGRNKVV 531 >gi|327484213|gb|AEA78620.1| GGDEF domain protein [Vibrio cholerae LMA3894-4] Length = 323 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 115/265 (43%), Gaps = 31/265 (11%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLS 70 IW C F P F I+ S F+ + + I + Y + L + + Sbjct: 68 IWSC-------FVPILFYIFTSARFAFVTSCLFLIIQSNIIY----------WQLQQTGA 110 Query: 71 LVIISITISLLLGYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGSY 125 + S+ + L YI ++ ++ R + L+ D L+G N + +S + Sbjct: 111 AISWSVLLHLCFAYIGIWVVAHVYEDNRRKIENSLLYLASRDPLTGAHNRLSLTTSFQHF 170 Query: 126 NE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 L ++ D+D+FK IND FGH GDKV+ + V G R+GGEEF Sbjct: 171 ERFNDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIETTRLFAQVVGDNNLY-RIGGEEF 229 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYR 239 S ++A + LR I+ SQ + G + +TIS G+ E + ++ ++ Sbjct: 230 CVTLFDQSLEQAGRVCERLRAIV--SQHLFAFGEKRVQVTISIGVCEYQAGDQLNDLLKF 287 Query: 240 ADQALYVAKKSGRNRVVCFSDIENN 264 AD LY AKK+GRN+V F N Sbjct: 288 ADMELYRAKKAGRNQVRLFRHGSTN 312 >gi|152985511|ref|YP_001351597.1| GGDEF domain-containing protein [Pseudomonas aeruginosa PA7] gi|150960669|gb|ABR82694.1| ggdef domain protein [Pseudomonas aeruginosa PA7] Length = 668 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 79/165 (47%), Gaps = 16/165 (9%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + D L+GL N +A L +L + DID+FK+IND+FGH GDKV Sbjct: 506 QKALTDPLTGLPNRAALSERLEQEVARRRRDGGELLLAVLDIDHFKRINDDFGHLAGDKV 565 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINI 210 + ++ +L F+ R GGEEF A L + Q L LR I + Sbjct: 566 LKIIAGELRKRLRQADFIARFGGEEFVVLLPATPLDAGRQ----LLERLRAAIAACPFHF 621 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + IT SAGI E RADQALY AK++GR+R+ Sbjct: 622 KGEP-LSITCSAGITAFVGNEAGEAAFERADQALYRAKRAGRDRL 665 >gi|225866030|ref|YP_002751408.1| putative sensory box/GGDEF family protein [Bacillus cereus 03BB102] gi|225790346|gb|ACO30563.1| putative sensory box/GGDEF family protein [Bacillus cereus 03BB102] Length = 430 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + NE ++++ FDID FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNNENIALILFDIDNFKAVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Q Sbjct: 321 FGDLALIELAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKQF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --SGIS-KLTASFGVALYEKGITREELMQRADIALYEAKKNGKNQVCIY 425 >gi|167624977|ref|YP_001675271.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167354999|gb|ABZ77612.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 518 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 93/205 (45%), Gaps = 18/205 (8%) Query: 65 LVENLSLVIISITISLL------LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118 L+EN + ++ L LG + S + LF +L+ +D L+ L N SA Sbjct: 316 LLENREQAQLKQSVETLRQELKELGKETESYKERLFEQ----QKLNLLDSLTQLPNRSAL 371 Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 + + L + DID+FK IND+FGH GDK + ++ L F Sbjct: 372 EERMDIEYRNYKRTKQPLWVAVADIDHFKTINDSFGHSTGDKTLQVIAMALKSALRESEF 431 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 V R GGEEF +E + L N +R+ +++ I +T+S G A+ E Sbjct: 432 VARYGGEEFVLLLPDVAESDIQPLLNRVREKVKSIPFKF-KNQRITVTVSIGAAQIIENE 490 Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256 I+ RAD ALY AK R+RV+ Sbjct: 491 LITETFDRADAALYKAKNESRDRVI 515 >gi|254225298|ref|ZP_04918910.1| GGDEF family protein [Vibrio cholerae V51] gi|125622139|gb|EAZ50461.1| GGDEF family protein [Vibrio cholerae V51] Length = 353 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 7/172 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152 N + L+ D L+G N + +S + L ++ D+D+FK IND FGH GD Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGD 232 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + V G R+GGEEF S ++A + LR I+ Sbjct: 233 KVLIETTRLFAQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIVSKHLFAFGE 291 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + +TIS G+ E + ++ ++ AD LY AKK+GRN+V F N Sbjct: 292 -KRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342 >gi|148261059|ref|YP_001235186.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5] gi|146402740|gb|ABQ31267.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5] Length = 705 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 12/171 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152 +S+L+ D L+GL N F + L E +++++F D+D FKQIND GH +GD Sbjct: 262 LSRLASTDPLTGLYNRPTFTARLAGRAEGSVGAPGRVALLFIDLDSFKQINDLRGHEMGD 321 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++++ V G V R GG+EF A +EA A ++IE + I+ Sbjct: 322 QVLRQTAERVARVIGATGDVARWGGDEFLVALPDCGGEEALRHAE---RLIEAIKTPITV 378 Query: 213 GPSI-HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 G + + S G+A + + ++I AD A+Y AK+ G++R F + Sbjct: 379 GADVCRVEASVGVALYPDNGDTADSVIRAADVAMYAAKREGKSRAKRFDPV 429 >gi|119774804|ref|YP_927544.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119767304|gb|ABL99874.1| GGDEF domain-like protein [Shewanella amazonensis SB2B] Length = 356 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 8/172 (4%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++ + Q+++ D L+GL N S +++L + + ++ D+D+FK+IND GH +GD Sbjct: 156 QHDSLVQIAQRDPLTGLFNRSKLELDLAALAPATQAI-LMLLDVDHFKRINDVHGHQMGD 214 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AALGSSEQEAAI-LANDLRKIIENSQI 208 KV+ L L + R GGEEF S+ E A+ LA + + Sbjct: 215 KVLTSLGKLLDALLPDVATAYRFGGEEFLVLFNLTEPSAFNETALNLAKTTAGRFQAALR 274 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + P IT S GIA+R E I RAD ALY AK+SGR++V F + Sbjct: 275 CVDVVPGSTITCSIGIAQRIAGEHIPPWFDRADAALYRAKRSGRDQVCVFEE 326 >gi|307130173|ref|YP_003882189.1| hypothetical protein Dda3937_03276 [Dickeya dadantii 3937] gi|306527702|gb|ADM97632.1| hypothetical protein Dda3937_03276 [Dickeya dadantii 3937] Length = 365 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 3/134 (2%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + + ++ DID+FK+IND+FGH VGD VI LS + GR GG+EF Sbjct: 233 HQQVATLALLDIDHFKRINDSFGHHVGDDVILLLSGGIKSTLRQSDITGRFGGDEFGMVL 292 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243 + EA + LR+ +E+ I + P++ + IS G+ + E + AD A Sbjct: 293 PQTPAVEAERIVQRLREYLES--IQLHQAPALRVGISVGLVQFHAGMEDYQVWLKAADTA 350 Query: 244 LYVAKKSGRNRVVC 257 LY AK +GR VC Sbjct: 351 LYQAKDNGRGCTVC 364 >gi|283835033|ref|ZP_06354774.1| HmsT protein [Citrobacter youngae ATCC 29220] gi|291069322|gb|EFE07431.1| HmsT protein [Citrobacter youngae ATCC 29220] Length = 358 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 111/247 (44%), Gaps = 20/247 (8%) Query: 37 IFIATVIFIANIFLFYIGLTPFYG-------------LEYILVENLSLVIISITISLLLG 83 +FI ++ F NI F + P G + Y + ++ + I I Sbjct: 109 LFIGSIAFANNIIAFTLHSLPSVGVCLWLNGSEHSLRIFYFMALPMAGIAIQHVIQKRYD 168 Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYF 139 + ++ +L ++ LS +D L+GL N L + N K ++ DID+F Sbjct: 169 GFAQQLMYKLLEERETLNGLSMLDPLTGLYNRRGLQHRLDTLLALSNSKHYVLLLDIDHF 228 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K ND++GH +GD+ + +S + + V R GGEEF Q+A A + Sbjct: 229 KAYNDHYGHMMGDQALIRVSAAIRDSVRSRDVVARFGGEEFMVLLTAIDPQQAQAAAERI 288 Query: 200 RKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 R+ + + +I S+ ++T+S GIA ++ I I RAD+ALY AK GRN + Sbjct: 289 RQKVYDLKIPHMFNESVATNVTVSIGIAPLVEQD-IEAAIARADKALYEAKNLGRNNTLV 347 Query: 258 FSDIENN 264 ++ N Sbjct: 348 SEELWVN 354 >gi|229523693|ref|ZP_04413098.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229337274|gb|EEO02291.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] Length = 353 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152 N + L+ D L+G N + +S + L ++ D+D+FK IND FGH GD Sbjct: 173 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFNDQTSLCLLVIDLDFFKSINDQFGHDTGD 232 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + V G R+GGEEF S ++A + LR I+ SQ + Sbjct: 233 KVLIETTRLFAQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCERLRAIV--SQHLFAF 289 Query: 213 GPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + +TIS G+ E + ++ ++ AD LY AKK+GRN+V F N Sbjct: 290 GEKRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLFRHGSTN 342 >gi|254457249|ref|ZP_05070677.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207086041|gb|EDZ63325.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 495 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 18/170 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++I ++ ID L+ +N A+ +S YN SI DID FK+IND +GH V Sbjct: 332 HQIEDMTYIDSLTNSMNRRAYNIKIEELLSLYSRYNTVFSIAMLDIDDFKKINDEYGHRV 391 Query: 151 GDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD V+ +V++ + + F+ R+GGEEF +S EA I++ +R+ +E Sbjct: 392 GDNVLI----NIVLLIKSEIRQNDFLYRIGGEEFVILFAQTSIHEAIIVSEKIRQSVEAE 447 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I S IT+S G++E + + I R D+ LY +K +G+N++ Sbjct: 448 LKTIKSKT---ITVSIGVSEVMQNDTENEIFTRVDRLLYKSKTNGKNQLT 494 >gi|294141081|ref|YP_003557059.1| GGDEF domain-containing protein [Shewanella violacea DSS12] gi|293327550|dbj|BAJ02281.1| GGDEF domain protein [Shewanella violacea DSS12] Length = 376 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 11/161 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N +F + + +K + ++ DID+FK+ ND GH VGDKV+A+++ Sbjct: 215 DQLTSLNNRRSFEDEVMKHMQKYTQSQSPSCMLLIDIDHFKRFNDAHGHLVGDKVLAYVA 274 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--- 216 L V FV R GGEEF + +A ++A LR I ++ + + Sbjct: 275 LALKQVVKGTDFVARYGGEEFVILLPNTQLTDALVVAEQLRTAISERKLTLGKDKKLSLG 334 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IT+S G++ + + RAD+ALY AK SGRN VC Sbjct: 335 SITVSLGVSTLNIGDNRESYFVRADEALYRAKSSGRN-CVC 374 >gi|226357685|ref|YP_002787424.1| diguanylate cyclase [Deinococcus deserti VCD115] gi|226319927|gb|ACO47920.1| putative diguanylate cyclase [Deinococcus deserti VCD115] Length = 633 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q S D L+GL N S ++ ++++ DID+FK ND+ GH GD Sbjct: 462 LRQQSIRDPLTGLYNRRYLEESFERELHRAQRSDDPIAVIMLDIDHFKHFNDSHGHEAGD 521 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ L L R GGEEFA G + +A A+ LR +E++Q S Sbjct: 522 ELLRALGQLLSGCIRAEDVACRYGGEEFAMVFPGMTLDQATRWADQLRHTVESTQF-ASR 580 Query: 213 GPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G ++ +++S G+A H ++ +I AD ALY AK+ GRNRV+ Sbjct: 581 GEALEQVSVSLGVAAFPQHGRHLADLIRAADAALYRAKREGRNRVI 626 >gi|254508626|ref|ZP_05120742.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16] gi|219548477|gb|EED25486.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16] Length = 626 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 82/175 (46%), Gaps = 20/175 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHP 149 R+ LS D L+ L N F S L Y + + DID+FK++ND GH Sbjct: 460 ERLRILSEKDELTQLWNRRKFESELSKYAKLVDRYPRQTTCLALLDIDHFKRVNDQQGHD 519 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+VI + L FV R+GGEEFA +S EA + N LR + Sbjct: 520 EGDRVIKRVGVILQDTLRDTDFVARIGGEEFAVILPHTSLAEAEMALNRLR-------VA 572 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFSDIE 262 + P + +TISAG+ + S Y+ AD ALY +K GRN V VC S E Sbjct: 573 VEIAPDLSVTISAGVTDLLADRTRS---YKCADIALYESKTLGRNLVSVCSSSEE 624 >gi|209964834|ref|YP_002297749.1| response regulator With diguanylate cyclase (GGDEF) domain, putative [Rhodospirillum centenum SW] gi|209958300|gb|ACI98936.1| response regulator With diguanylate cyclase (GGDEF) domain, putative [Rhodospirillum centenum SW] Length = 482 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 16/182 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH---SAFISSL---GSYNEK-LSIVFFDIDYFKQIND 144 L +Y + L+ D L+GL N SA + L G N+K ++ + FDID+FK +ND Sbjct: 281 RLRSNYEQSLSLALTDSLTGLFNRRYLSAHLPRLLDRGGGNQKPVAALLFDIDHFKIVND 340 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ ++ + V RLGGEEF + A +A LR+ I Sbjct: 341 TWGHSAGDEVLREVAVRTSRNLRNFDLVTRLGGEEFVVVMPDTDLSSAMTVAERLRRRIA 400 Query: 205 NS--QINISSGP-SIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ++ ++G I +TIS G+A E +++ RAD ALY K+SGRNRV Sbjct: 401 DEPFKVTATAGTGEITVTISIGVAVADGTDGDGRGESGDSLLRRADTALYRVKRSGRNRV 460 Query: 256 VC 257 V Sbjct: 461 VA 462 >gi|95928352|ref|ZP_01311100.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95135623|gb|EAT17274.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 311 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 85/178 (47%), Gaps = 13/178 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQI 142 +K L +SQ D L+GL N AF + L + + +V DIDYFK++ Sbjct: 118 IKRLSQDKQSMSQTMMEDSLTGLCNRKAFDRAIQVELARFKRQSIPFGLVILDIDYFKRV 177 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND++GH VGD V+ +S+++ R GGEEFA G + EA A +R + Sbjct: 178 NDSYGHQVGDHVLKAVSNRIAGSLRELDIPCRYGGEEFAVILPGLTATEAYAAAERVRNL 237 Query: 203 IENSQINISSGPSIHITISAG-----IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IE N GP +T+S G I E +I AD ALY AK GRNRV Sbjct: 238 IETIPANELQGPP-QVTVSLGVCSTHIVEDRQNVTAEQLIEWADLALYEAKHQGRNRV 294 >gi|332296033|ref|YP_004437956.1| diguanylate cyclase with PAS/PAC sensor [Thermodesulfobium narugense DSM 14796] gi|332179136|gb|AEE14825.1| diguanylate cyclase with PAS/PAC sensor [Thermodesulfobium narugense DSM 14796] Length = 560 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 84/173 (48%), Gaps = 18/173 (10%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFK 140 +I KEL++ LS D L+G N F+ L E K S++ DID FK Sbjct: 391 NIEKELYL-------LSITDPLTGAYNRRYFLERLDEEIERSRRTGSKFSVIMLDIDNFK 443 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND FGH GD V+ LS+ + R GGEEF ++ + A ILA +LR Sbjct: 444 GINDKFGHNAGDLVLKSLSETIKDRIRKIDIFARWGGEEFVILLPETTPERALILAEELR 503 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + N +I G T+S GIA ++ I ++I RAD +Y AK G+N Sbjct: 504 IRLNNLKIEGIKG----FTVSLGIAGFRKEDDIDSLIERADNLMYEAKAVGKN 552 >gi|326404458|ref|YP_004284540.1| hypothetical protein ACMV_23110 [Acidiphilium multivorum AIU301] gi|325051320|dbj|BAJ81658.1| hypothetical protein ACMV_23110 [Acidiphilium multivorum AIU301] Length = 719 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 12/171 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152 +S+L+ D L+GL N F + L E +++++F D+D FKQIND GH +GD Sbjct: 276 LSRLASTDPLTGLYNRPTFTARLAGRAEGSVGAPGRVALLFIDLDSFKQINDLRGHEMGD 335 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++++ V G V R GG+EF A +EA A ++IE + I+ Sbjct: 336 QVLRQTAERVARVIGATGDVARWGGDEFLVALPDCGGEEALRHAE---RLIEAIKTPITV 392 Query: 213 GPSI-HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 G + + S G+A + + ++I AD A+Y AK+ G++R F + Sbjct: 393 GADVCRVEASVGVALYPDNGDTADSVIRAADVAMYAAKREGKSRAKRFDPV 443 >gi|304404109|ref|ZP_07385771.1| diguanylate cyclase with GAF sensor [Paenibacillus curdlanolyticus YK9] gi|304347087|gb|EFM12919.1| diguanylate cyclase with GAF sensor [Paenibacillus curdlanolyticus YK9] Length = 639 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 10/129 (7%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ DID FK IND +GH VGD+++ +S+ + R GGEE A Sbjct: 515 SLIVVDIDKFKSINDTYGHQVGDQILMQVSETIKASIRETDIAARWGGEELAIYLPEIRR 574 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYV 246 ++A +A +RK +E + + PS +T+S G++E K + ++ YRAD ALY Sbjct: 575 EQAYRIAERIRKKVE-----LETHPS--VTVSCGLSEWTFEDEKVSVESLFYRADMALYQ 627 Query: 247 AKKSGRNRV 255 AK SGRNR+ Sbjct: 628 AKNSGRNRI 636 >gi|284042675|ref|YP_003393015.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] gi|283946896|gb|ADB49640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] Length = 587 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 16/157 (10%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F ++ + Y + +++ D+D FKQ+ND +GH GD+VIA ++ Sbjct: 161 DPLTGLLNRRRFEQELERHVAHVRRYGPEGAVLVVDVDRFKQVNDAYGHTAGDRVIASVA 220 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIH 217 L + V R+GG+EFA + EA I+A R+++E +Q + G H Sbjct: 221 RVLHRRLRSTDTVARIGGDEFAVLLPKADRAEAEIVA---RRLVEAVRAQADPGDGERTH 277 Query: 218 ITISAG---IAERCHKEPISTIIYRADQALYVAKKSG 251 +TIS G + ER + ++ AD A+Y AK SG Sbjct: 278 VTISVGATVLDERSELSAEAAVVD-ADLAMYDAKDSG 313 >gi|167908432|ref|ZP_02495637.1| diguanylate cyclase [Burkholderia pseudomallei NCTC 13177] Length = 281 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 9/175 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 LKEL + ++ L+ D L+G N FI + S S++ D+D FK I Sbjct: 106 LKELQHTNQKLEYLASTDPLTGASNRRKFIEQMQSEIARAKCDGTAFSLLALDLDNFKTI 165 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 NDN+GH +GD V+ + V + R+GGEEF A+ +A +R Sbjct: 166 NDNYGHQIGDVVLRNFVRRCVAAIRPCDHIARVGGEEFMVLLPRMFADAASEIAERVRAA 225 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 I N+ I G I +T+S G+++ + + II AD+ LY AK G NRVV Sbjct: 226 IANASFGI-GGKRIGVTVSIGVSQYGRDGDTLDDIINAADKLLYRAKNEGSNRVV 279 >gi|149375454|ref|ZP_01893224.1| hypothetical protein MDG893_16397 [Marinobacter algicola DG893] gi|149360159|gb|EDM48613.1| hypothetical protein MDG893_16397 [Marinobacter algicola DG893] Length = 757 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 5/146 (3%) Query: 112 LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 LL H + ++ G ++ LS++ DID+FK+ ND GH GD + ++ L F Sbjct: 612 LLEHESAVALRG--DQPLSLLIVDIDHFKRFNDTHGHEAGDSALKAVAGMLARHFRDSDV 669 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCH 229 V R GGEEF GSS + A A +L + + + H+TIS G++ C Sbjct: 670 VCRFGGEEFVIIMAGSSAKAAYDKARELARAVRTMTVEHGGFELGHVTISVGVSSWPECS 729 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 P +++ AD+ALY AK+ GR+RV Sbjct: 730 DSP-DSLLGLADRALYRAKEGGRDRV 754 >gi|148975747|ref|ZP_01812578.1| GGDEF family protein [Vibrionales bacterium SWAT-3] gi|145964820|gb|EDK30072.1| GGDEF family protein [Vibrionales bacterium SWAT-3] Length = 338 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D + L N +F + +L N+ L ++ DID+FK ND +GH GD V+ ++ +L Sbjct: 182 DSTTTLYNRRSFDRDLETLCEANQSLCLILLDIDHFKNFNDTYGHLFGDMVLKGIARKLK 241 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA S + A LA+ R+ +E I + SG + +IT S Sbjct: 242 LSCREGISAYRFGGEEFALIVPNKSVRIARQLADTNRRSLEKLSIKDRRSGEQVGNITAS 301 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE E ++I RAD+ LY AK GRNRV+ Sbjct: 302 FGVAELEPGESPQSLIERADRLLYEAKTLGRNRVM 336 >gi|91791590|ref|YP_561241.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91713592|gb|ABE53518.1| diguanylate cyclase/phosphodiesterase with Phytochrome (GAF) sensor [Shewanella denitrificans OS217] Length = 710 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 25/176 (14%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNF 146 I N++ ++ D L+G+ N F L S N++ +I D+D FK +ND + Sbjct: 276 LIEKNQLEIIALKDPLTGIANRLMFERKLKSALQQALEANQQFAIYMIDLDRFKPVNDTY 335 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRK 201 GH VGD+++ ++ +L + V RLGG+EFA LG S E+ A ++ ++++ Sbjct: 336 GHAVGDELLIQVTQRLQALLRCEDMVARLGGDEFAVIQLGISNKGDIERIAKLMVEEVKR 395 Query: 202 --IIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253 +IE I I G SI ITI C + IS ++ AD ALY KKSGRN Sbjct: 396 PFLIEGKNIEI--GASIGITI-------CPLDAISQTELLLGADLALYEVKKSGRN 442 >gi|85858866|ref|YP_461068.1| response regulator [Syntrophus aciditrophicus SB] gi|85721957|gb|ABC76900.1| response regulator protein with GGDEF domain [Syntrophus aciditrophicus SB] Length = 356 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 9/186 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132 +L+ YI+ ++ N++ +S D L+G+ N F + Y+ LS++ Sbjct: 168 VLVAYIATMFASDIRYGLNKVKMMSETDELTGIYNRRGFAIVAGRLLGQSARYSRPLSLL 227 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D D K+IND +GH GD+++ L + + + R GG+EF + A Sbjct: 228 LIDSDNLKKINDEYGHHAGDQLLITLVNTIQAQLRHTDILARHGGDEFIILLPETPPSGA 287 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251 +A +R IE + I + G +H T S G+A I ++ +AD +Y AK G Sbjct: 288 LDVAERIRNAIETTPI-VLEGKIVHTTASIGVASYPSEGYNIDVLLAQADHKMYAAKLGG 346 Query: 252 RNRVVC 257 RNRVV Sbjct: 347 RNRVVM 352 >gi|327393645|dbj|BAK11067.1| GGDEF family protein YedQ [Pantoea ananatis AJ13355] Length = 390 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 123/263 (46%), Gaps = 44/263 (16%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE-------- 62 +WL +F P +++ + F + +F+ N T G++ Sbjct: 143 LWLARRDMNTTFWPAQLLLWTHLLFHV---ARLFLDN--------TRPVGIQGAISGSDF 191 Query: 63 --YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 Y+++E++ L +I T+++L +++ E + N + S D L+ + N A S Sbjct: 192 SIYVILESM-LFVIGFTVTIL------AMVNER--TRNALKDASLHDPLTNIWNRRALFS 242 Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 + N+ L++V FD+D+FK IND +GH GD+V+ +++ Sbjct: 243 GADAMIRFCLKQNKALTVVLFDLDHFKGINDRYGHQQGDRVLIDFCNRVSGTLPQDGRFA 302 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232 RLGGEEF AA L S ++A + +R+ +++S+ I ++S G A + E Sbjct: 303 RLGGEEF-AALLPLSFEQARVWCEQVRQTVQHSRPG-----QIAYSVSIGFATADNGEID 356 Query: 233 ISTIIYRADQALYVAKKSGRNRV 255 ++ AD+ALY AK GRNR Sbjct: 357 FGQLMALADKALYRAKAKGRNRT 379 >gi|320326437|gb|EFW82490.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331591|gb|EFW87529.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330985840|gb|EGH83943.1| GGDEF domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 420 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 194 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 243 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 244 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 303 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + E +R+ I N +I N S P S+ + Sbjct: 304 EEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAGSVSV 363 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 364 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 410 >gi|294012414|ref|YP_003545874.1| putative diguanylate cyclase [Sphingobium japonicum UT26S] gi|292675744|dbj|BAI97262.1| putative diguanylate cyclase [Sphingobium japonicum UT26S] Length = 390 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/154 (39%), Positives = 79/154 (51%), Gaps = 6/154 (3%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D LSGLLN F ++G KL S++ DID+FK IND GH +GD+VI L+ L Sbjct: 215 DPLSGLLNRRGFDDAIGQRTRKLPTQGSLIVCDIDHFKTINDAHGHALGDRVIVALARIL 274 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + R GGEEF + AA AND+R+ + ++ G S +T S Sbjct: 275 MEFAPADAITARFGGEEFIMFLPDADAARAATTANDIRESVAR-EVASHLGLSRPLTASF 333 Query: 223 GI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G+ A + I I RAD ALY AK GRNRV Sbjct: 334 GLSAVQPGDAAIHDAIARADAALYEAKMHGRNRV 367 >gi|258620242|ref|ZP_05715281.1| GGDEF family protein [Vibrio mimicus VM573] gi|258587600|gb|EEW12310.1| GGDEF family protein [Vibrio mimicus VM573] Length = 411 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 17/181 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143 K+L+ + ++ LS D L+GL N + L + V D+D FK++N Sbjct: 233 KQLYQANRQLEALSLTDSLTGLPNRRKAMHQLALHWNLAREQKKPFVCVMIDVDGFKEVN 292 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D++GH +GDKV+ ++ L F V RLGG+EF A + +A + + Sbjct: 293 DSYGHDIGDKVLTIIAHALKDHFRNDDLVCRLGGDEFLAICPNTDAVSGVHIAEHVCDEV 352 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 E +I + G ++S G+AE + H E ++ ADQA+Y+AK +G+NRV F Sbjct: 353 ELLEIPV-EGIHWQGSVSMGVAEFDPNMKDHHE----LLRAADQAVYLAKNNGKNRVCAF 407 Query: 259 S 259 + Sbjct: 408 N 408 >gi|296123116|ref|YP_003630894.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776] gi|296015456|gb|ADG68695.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776] Length = 650 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 27/241 (11%) Query: 42 VIFIANIF--------LFYIGLTPFYGLEYILVE-NLSLVIISI------TISLLLGYIS 86 V+F++NI LF + L+ ++++ N LV +++ T + + +++ Sbjct: 265 VVFLSNIEERCRQAAELFNVSLSHLQNSADLMIQANEQLVQLALREHVASTQASIRQHVA 324 Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 +EL + Q + D L+G+ N F + + L+++F D+D+F Sbjct: 325 EQEKRELETRNRELQQQALHDPLTGVHNRKFFDEVLLREVHRCVRAAQPLAVIFIDVDHF 384 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K +ND FGH GD+V+ ++ + R GGEEF SE+ LA + Sbjct: 385 KNVNDTFGHQFGDQVLKRVAQIFSETVRVADTLARFGGEEFVVLVSQPSEKGVERLAERI 444 Query: 200 RKIIENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R+ +E S P + IT+S G I R +I AD+ LY AK++GRNR Sbjct: 445 RENVEKEAFRFGSTP-VKITVSVGAAIAIPRRGETGIGDRLIAVADECLYEAKRNGRNRT 503 Query: 256 V 256 + Sbjct: 504 I 504 >gi|229591627|ref|YP_002873746.1| putative sensory box GGDEF/EAL domain-containing protein [Pseudomonas fluorescens SBW25] gi|229363493|emb|CAY50722.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas fluorescens SBW25] Length = 1100 Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 19/208 (9%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 + ++ T LLL S+LK + +I L+ D L+ L N + I+ L Sbjct: 634 ITLNETPCLLLTARDVSLLKN---AQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKR 690 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-- 182 +N + +++F D+D+FK IND+ GHPVGD V+ ++ +L V RLGG+EF Sbjct: 691 HNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFVVLL 750 Query: 183 AALGSSEQEAAI----LANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237 + L S E + LA+ LR+++ S+ G + +T S G+A H + ++ Sbjct: 751 SGLDGSRMEVSAQVQELADTLRELL--SEPMFLDGHRLQVTPSIGVALIPDHGSTPADLL 808 Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNT 265 RAD ALY AK SGRN F + T Sbjct: 809 KRADIALYRAKDSGRNTTQMFHNSMQKT 836 >gi|227885616|ref|ZP_04003421.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 83972] gi|300940411|ref|ZP_07154996.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] gi|300975482|ref|ZP_07173030.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1] gi|301050682|ref|ZP_07197544.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1] gi|227837189|gb|EEJ47655.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 83972] gi|300297639|gb|EFJ54024.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1] gi|300410372|gb|EFJ93910.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1] gi|300454805|gb|EFK18298.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] gi|315286673|gb|EFU46106.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3] gi|315290242|gb|EFU49620.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1] Length = 558 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132 LL Y+ ++ +++ + + + D L+ L N A ++ S++ Sbjct: 368 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCHTHQHPFSVI 427 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ +A Sbjct: 428 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 487 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250 A +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+AK++ Sbjct: 488 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 547 Query: 251 GRNRV 255 GRNRV Sbjct: 548 GRNRV 552 >gi|297583861|ref|YP_003699641.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Bacillus selenitireducens MLS10] gi|297142318|gb|ADH99075.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus selenitireducens MLS10] Length = 778 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 19/201 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISS-LGSYNEKLSIVFF 134 SL + I + EL +I QL+ D L+GL+N A IS + + I++F Sbjct: 327 SLTMMLIKHHDVTELVHKDEQIEQLAYFDQLTGLVNRYHFEAIISEKIKDIGHQFGIIYF 386 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-- 192 D+D+FK+IND GH GD ++ +++ L V + RLGG+EFA +SE A Sbjct: 387 DLDHFKKINDTIGHFAGDYLLKQVAETLQGVLPDDATLARLGGDEFAVVLDETSEGHALM 446 Query: 193 AILANDLRKIIENSQ--INISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALY 245 +L I++ ++ +NI G +I+ SAGI R H E + + D A+Y Sbjct: 447 RLLEEVADTIVKTARKPVNI-DGVHYYISASAGIVVYPEHGRSHDELMKNV----DTAMY 501 Query: 246 VAKKSGRNRVVCF-SDIENNT 265 AK G+N+ + F ++I++ T Sbjct: 502 KAKNDGKNKCIFFNAEIKDET 522 >gi|323499216|ref|ZP_08104193.1| hypothetical protein VISI1226_03320 [Vibrio sinaloensis DSM 21326] gi|323315604|gb|EGA68638.1| hypothetical protein VISI1226_03320 [Vibrio sinaloensis DSM 21326] Length = 566 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 71/133 (53%), Gaps = 5/133 (3%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAA 183 E + + DID+FK+IND GH GDKVI +D + F P + + R GGEEF Sbjct: 431 QEGIYLAILDIDHFKRINDVHGHQCGDKVIMHTADLMKKYFPKPGAISLARYGGEEFCVL 490 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 + E +A R +IE +++N G + T+S GI + I+ I RAD+A Sbjct: 491 FNANDENDAYEQCEMFRHMIEQAELNF-EGAEVRFTVSIGITSAEDSQHIT--IGRADKA 547 Query: 244 LYVAKKSGRNRVV 256 LY AK GRN+VV Sbjct: 548 LYQAKGLGRNQVV 560 >gi|308187730|ref|YP_003931861.1| Inner membrane protein ycdT [Pantoea vagans C9-1] gi|308058240|gb|ADO10412.1| Inner membrane protein ycdT [Pantoea vagans C9-1] Length = 521 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+S ++ D L+ LLN + L Y + S++ DID+FK +ND++GH VGD+VI Sbjct: 359 RLSSEAQTDPLTQLLNRRGLNAVLEYYRTLRQPFSVLALDIDHFKNVNDSWGHDVGDRVI 418 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L V R GGEEF G++ EA I+A +R I + + Sbjct: 419 QQVASTLRASARQSDVVCRNGGEEFLMLLPGTALDEAQIIAERVRLGIAEAWLTDVG--- 475 Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IT+S G+A + T + +AD ALY AK +GRN V+ Sbjct: 476 -RITLSIGVAAWNGTQDAGLETSLKQADAALYAAKNAGRNCVIV 518 >gi|302339267|ref|YP_003804473.1| response regulator receiver modulated diguanylate cyclase [Spirochaeta smaragdinae DSM 11293] gi|301636452|gb|ADK81879.1| response regulator receiver modulated diguanylate cyclase [Spirochaeta smaragdinae DSM 11293] Length = 565 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 8/163 (4%) Query: 107 DCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNH+ L S +E L+ D D+FK++ND +GH GD+V+ L+ Sbjct: 401 DSLTGLLNHTNLKEHLSRELLRASRSETFLTFAMIDADHFKRVNDTYGHLTGDRVLKNLA 460 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L+ +GR GGEEF L + A + N++R+ + I S +T Sbjct: 461 RLLLDRLRRTDIIGRYGGEEFGIILLNTDVTAAEHIMNEIRENF-SRVIQQSESKQFFVT 519 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 S GIA ST+ AD+ALY AK++GRNRVV + E Sbjct: 520 FSCGIAGFPECADASTLTLAADKALYSAKENGRNRVVVYHHQE 562 >gi|262165381|ref|ZP_06033118.1| GGDEF family protein [Vibrio mimicus VM223] gi|262025097|gb|EEY43765.1| GGDEF family protein [Vibrio mimicus VM223] Length = 485 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ++L+ D ++GLLN L +N+ L+I DID FKQIND +GH +GD+VI ++ Sbjct: 328 AELAARDPMTGLLNRRGMEGFLQGKRHNQYLAIAVLDIDDFKQINDTYGHDMGDRVICYI 387 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +Q+ + V R GGEEF EQ I+ + +S + G Sbjct: 388 GEQIENHIRSSDAVARFGGEEFVVYVTAKEQEQIHRIMQRIFDAVCHDSAQILDQG---- 443 Query: 218 ITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TIS G I E + + ADQ LYVAK SG+N++V Sbjct: 444 FTISGGVEIVESKTELTFEELFKAADQKLYVAKSSGKNQLV 484 >gi|257483066|ref|ZP_05637107.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011700|gb|EGH91756.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 420 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 194 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 243 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 244 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 303 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + E +R+ I N +I N S P S+ + Sbjct: 304 EEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAGSVSV 363 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 364 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 410 >gi|268680237|ref|YP_003304668.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268618268|gb|ACZ12633.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 514 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDK 153 Q +ID L+ + A + LG E ++ F DIDYFK++ND FGH GD Sbjct: 350 KQEVKIDFLTHVATKRALSAELGRVEEAFMRYKIDYTLCFIDIDYFKRVNDTFGHEAGDV 409 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 +++ + L F GR GGEEF + A A+ +R I+E + + Sbjct: 410 ILSTVGKILRKYVRQVDFAGRYGGEEFLVVLPSTDLVHAIHFADKIRSIVEQFKF-LYKN 468 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G+A+R + AD LY AK++GRN+V+ Sbjct: 469 ERISVTVSCGVAQRSQYTSKEETLSAADAFLYKAKEAGRNQVM 511 >gi|226356672|ref|YP_002786412.1| c-di-GMP phosphodiesterase A [Deinococcus deserti VCD115] gi|226318662|gb|ACO46658.1| putative c-di-GMP phosphodiesterase A [Deinococcus deserti VCD115] Length = 821 Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 8/161 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R++ + D L+GL+N +AF ++L + + L ++F D+D+FKQ+ND GHPVGD + Sbjct: 381 RLAYQAGHDALTGLMNRAAFEATLEAAVLGTQDALGVLFIDLDHFKQVNDTLGHPVGDAL 440 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 + ++ +L+ V R GG+EF E EAA A ++I+E + + +G Sbjct: 441 LVQVAQRLLQCVRDHDLVARQGGDEFTVLLRNVQEHEAAERA--AQRILEALSVPVELAG 498 Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 + +T S GIA ++T+ AD A+Y+AK+ R+ Sbjct: 499 RQLTVTASIGIALFPQDGTDVTTLQKNADLAMYLAKRERRS 539 >gi|148977485|ref|ZP_01814074.1| putative sensory box/GGDEF family protein [Vibrionales bacterium SWAT-3] gi|145963280|gb|EDK28546.1| putative sensory box/GGDEF family protein [Vibrionales bacterium SWAT-3] Length = 618 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/183 (35%), Positives = 89/183 (48%), Gaps = 24/183 (13%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLS-IVFFDIDY 138 S+ KEL + R+ LS D LS L N F L Y NE + + DID Sbjct: 444 SVRKELEV---RLRFLSERDALSNLWNRRKFEEQLAYYSRLVERYPNEATTCLALVDIDN 500 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+IND GH GD+VIA ++ L + FV R+GGEEFA +S EA Sbjct: 501 FKRINDELGHDEGDRVIARVAKLLQDSLRSTDFVARVGGEEFALLMPHTSLPEA------ 554 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-V 256 +++++ +I I +T+S G + ST Y+ AD LY +K SGRN V + Sbjct: 555 -KRVLDRLRIEIELSAGTKVTVSVGFTDLTSN---STRSYKCADVGLYESKSSGRNTVSI 610 Query: 257 CFS 259 C S Sbjct: 611 CPS 613 >gi|71909585|ref|YP_287172.1| GGDEF [Dechloromonas aromatica RCB] gi|71849206|gb|AAZ48702.1| GGDEF protein [Dechloromonas aromatica RCB] Length = 523 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 21/170 (12%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D L+GL N + F ++ ++ + ++VF D+D+FK INDN+GH +GD Sbjct: 357 LRHMAQHDPLTGLPNRALFSDRLHKELARAKRHDGQFALVFLDLDHFKPINDNYGHAIGD 416 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKII------EN 205 V+ ++ +L VGR+GG+EF +E +AA+ LA +R++I + Sbjct: 417 LVLQQVALRLKDTVRESDTVGRIGGDEFVVLVPELAESDAALSLAEKIRQVIRQPFALDG 476 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 Q++IS + I GI E ++ RAD+A+Y AK GR+ V Sbjct: 477 RQLDISCSLGVAIYPDDGIDE-------ISLTKRADEAMYRAKDDGRDSV 519 >gi|114321658|ref|YP_743341.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii MLHE-1] gi|114228052|gb|ABI57851.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii MLHE-1] Length = 419 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 11/181 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138 +G + E + + + D L+GL N +F L Y LS++ FD+D+ Sbjct: 242 TGKDITERVRMEEELKRAATTDALTGLANRLSFEQLLERDYERCRRYGGALSLLMFDLDH 301 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +ND GH GD V+ L+ ++ T V R GGEEF + A LA Sbjct: 302 FKAVNDAHGHEAGDAVLQALAGLVLANVRTADTVARWGGEEFMVLLPETPLAAAGELAEK 361 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 LR+ + + P +T S G+ + T++ RAD+ALY AK GR+RV C Sbjct: 362 LRERVAAHRFP-HGAP---VTASFGVCALRDDDTCRTLVRRADEALYRAKHLGRDRVECL 417 Query: 259 S 259 S Sbjct: 418 S 418 >gi|323978291|gb|EGB73377.1| GGDEF domain-containing protein [Escherichia coli TW10509] Length = 298 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S +D L+GL S L ++ DID FK +ND +GH +GD V+ L Sbjct: 131 SNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTL 190 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L V R GGEEF ++++EA + ++++N I S G I+I Sbjct: 191 ATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGIRICQLVDNHAITHSEG-HINI 249 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AG++ +E + +I RAD+A+Y K++GRNR + F D +N Sbjct: 250 TVTAGVSRAFPEESLDVVIGRADRAMYEGKQTGRNRCM-FIDEQN 293 >gi|312173166|emb|CBX81421.1| Protein adrA [Erwinia amylovora ATCC BAA-2158] Length = 532 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+ ++ D L+GLLN + L S + +++ DID FK +ND FGH GD VI Sbjct: 361 RLKSEAQTDPLTGLLNRRGLDAVLDYFLSTGQPFALLALDIDRFKGVNDAFGHAAGDTVI 420 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ QL + + R GGEEF G+ A ++A +RK IE QI+ Sbjct: 421 KTVAQQLGLGARQSDILCRNGGEEFLMILPGADRDRALMIAERVRKRIEQFQIDAIG--- 477 Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++TIS GI+ + + +AD+ALY AK +GRN VV Sbjct: 478 -NVTISIGISFWSSDSENDMHDAFGQADEALYRAKNTGRNCVV 519 >gi|306814221|ref|ZP_07448387.1| putative diguanylate cyclase [Escherichia coli NC101] gi|305852380|gb|EFM52831.1| putative diguanylate cyclase [Escherichia coli NC101] Length = 558 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 9/185 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132 LL Y+ ++ +++ + + + D L+ L N A ++ S++ Sbjct: 368 LLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCHTHQHPFSVI 427 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK IND FGH GD+V++ + + GR+GGEEF G++ +A Sbjct: 428 QVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQA 487 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKS 250 A +A +R + ++ I+ +I I+ S G+ +E + AD+ LY+AK++ Sbjct: 488 AEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQA 547 Query: 251 GRNRV 255 GRNRV Sbjct: 548 GRNRV 552 >gi|298489177|ref|ZP_07007196.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156259|gb|EFH97360.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 432 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 206 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 255 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 256 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 315 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + E +R+ I N +I N S P S+ + Sbjct: 316 EEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRGGAQAGSVSV 375 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 376 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVTYGQLNRR 422 >gi|253687722|ref|YP_003016912.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754300|gb|ACT12376.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 353 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 10/184 (5%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131 + LGY++ + +L + ++S D ++ L N + L Y ++ Sbjct: 168 PIFLGYVTYNTALKLAEHKRMLMEVSIHDGMTNLYNRHHWERLLKHEFDLCQRYKRTATL 227 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 V FDID+FK NDNFGH VGD+ I L+ +L F +GR GG+EFA +S E Sbjct: 228 VLFDIDHFKAFNDNFGHNVGDQAILLLARELTSGFRETDVIGRFGGDEFAVILPQTSAGE 287 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250 A + +R+ + +N + P + + +S GIAE + AD ALY AK Sbjct: 288 ALDAVSRIRESLSLKFLNQT--PQLAVFVSVGIAEISPEMGQYMDWLKSADMALYRAKNK 345 Query: 251 GRNR 254 GR R Sbjct: 346 GRRR 349 >gi|288817375|ref|YP_003431722.1| diguanylate cyclase (GGDEF motif) with PAS/PAC sensor [Hydrogenobacter thermophilus TK-6] gi|288786774|dbj|BAI68521.1| diguanylate cyclase (GGDEF motif) with PAS/PAC sensor [Hydrogenobacter thermophilus TK-6] gi|308750982|gb|ADO44465.1| diguanylate cyclase with PAS/PAC sensor [Hydrogenobacter thermophilus TK-6] Length = 523 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 13/170 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSA---FIS----SLGSYNEKLSIVFFDIDYFKQIND 144 E I+ ++ +L D L+ + N A F+S Y IVFFDID FK+IND Sbjct: 356 ERKIAEKKLRRLIMYDGLTQIYNRYALEEFLSRELVKAERYKLPFGIVFFDIDDFKRIND 415 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH +GD V+ L+ + GR GGEEF + ++ A A +RK++E Sbjct: 416 TYGHKMGDMVLKRLARLVKGNIRKADIFGRWGGEEF--LIILPQLEDPAAFAEKIRKMVE 473 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 ++ + I +TIS G+ + + TI+ R D LY AK+ G+NR Sbjct: 474 STVFD----KGIKVTISLGVTTYREGDTVDTILRRVDAGLYRAKREGKNR 519 >gi|257469735|ref|ZP_05633827.1| diguanylate cyclase/phosphodiesterase [Fusobacterium ulcerans ATCC 49185] gi|317063967|ref|ZP_07928452.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689643|gb|EFS26478.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 447 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 91/176 (51%), Gaps = 16/176 (9%) Query: 96 SYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIV-------FFDIDYFKQINDNFG 147 YN + + + D ++ LLN A + L S N K+ I+ FD+D FK+IND +G Sbjct: 277 QYNYELKKKAEYDAVTDLLNR-ATLEELISLNLKIDIMKGINIFMIFDVDDFKEINDTYG 335 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIE- 204 HP GD V+ ++D F + +GRLGG+EFA + S E L L K+ Sbjct: 336 HPFGDIVLHKIADIFKESFRSVDIIGRLGGDEFAVFLPQISSIEWIIQKLKGVLPKVKRL 395 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++NI I+IS GI E + I +AD+ALY AKKSG+N +SD Sbjct: 396 SKELNIEKS----ISISIGIYEIQFSDSFREIFIKADKALYQAKKSGKNGYEFYSD 447 >gi|218548982|ref|YP_002382773.1| hypothetical protein EFER_1630 [Escherichia fergusonii ATCC 35469] gi|218356523|emb|CAQ89146.1| conserved hypothetical protein; PAC/PAS and GGDEF domains [Escherichia fergusonii ATCC 35469] Length = 412 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+GLLN F S G ++ S++ D D FK +ND +GH GD Sbjct: 251 LEQAAMRDALTGLLNRRQFFLLTEHNSSQPGLMSQDYSLLLIDTDRFKSVNDLYGHQKGD 310 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+ L V R GGEEF ++ +A LA +R + ++I ++ Sbjct: 311 DVLCVLARTLESCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIRAQV--AKITLTG 368 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 P T+S G+A E I + R D ALY AK GRNRV+ Sbjct: 369 LP--RFTVSIGVARHEIDETIDALFKRVDDALYRAKNDGRNRVLA 411 >gi|188581693|ref|YP_001925138.1| diguanylate cyclase [Methylobacterium populi BJ001] gi|179345191|gb|ACB80603.1| diguanylate cyclase [Methylobacterium populi BJ001] Length = 403 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 7/185 (3%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF--FDI 136 S+ + ++ ++ KE R++ + D L+G+ N A ++ + FD+ Sbjct: 197 SVAIAFVFMALTKERAEREQRLA--AETDALTGIANRRALVAGAERHLAVAPAALLLFDL 254 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK IND +GH VGD V+A + GR+GGEEFA E+ AA + Sbjct: 255 DRFKAINDRYGHSVGDAVLAAFCTIAAPLLPPEAVFGRMGGEEFACLLPRLDERAAARVG 314 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 +R + + P + + +S G+A + ++ RAD ALY AK +GR+RV Sbjct: 315 ERVRAAVAG--FDHPDYPDLAMRVSVGVAAESQIGGSLDYLLRRADDALYRAKHAGRDRV 372 Query: 256 VCFSD 260 V D Sbjct: 373 VTAGD 377 >gi|149186974|ref|ZP_01865282.1| diguanylate cyclase with PAS/PAC sensor [Erythrobacter sp. SD-21] gi|148829363|gb|EDL47806.1| diguanylate cyclase with PAS/PAC sensor [Erythrobacter sp. SD-21] Length = 594 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 11/162 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L+G+ N +++L +E L++ DID+FK IND FGH VGD Sbjct: 431 VRMLAETDALTGMPNRRYILANLAEAMDANEFRHEPLTVAMVDIDHFKAINDEFGHEVGD 490 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L+ + VGR+GGEEF E + + +R+ + + Sbjct: 491 TVLKQIAAILMDELRSDDSVGRMGGEEFLFVFPKRRAAELDLRCDRMRERLAAEEWE--- 547 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T+S GIAE ++ AD+ALY AK++GRNR Sbjct: 548 -HPMTVTLSIGIAELQPGWDERDLLRAADEALYEAKRAGRNR 588 >gi|20807566|ref|NP_622737.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter tengcongensis MB4] gi|20516102|gb|AAM24341.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) [Thermoanaerobacter tengcongensis MB4] Length = 670 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 11/154 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N F+ L E++ S++ FD+D+FK +ND FGH GD V+ ++ Sbjct: 516 DPLTNIYNRRFFMQMLEQEIERVKRNKKPFSLIMFDLDHFKNVNDRFGHAAGDTVLRSVA 575 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + + R GGEEF +S AA LA +LRK I + ++ +T Sbjct: 576 NTVKKRIRKTDYFARWGGEEFIILLPETSLNNAAELAEELRKKISETALDGIG----KVT 631 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 S G+ E + + + T++ R D ALY AK SGRN Sbjct: 632 ASFGVTEYRNTDTMDTVLLRVDGALYEAKGSGRN 665 >gi|313496579|gb|ADR57945.1| Diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida BIRD-1] Length = 342 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 4/130 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK+IND++GH GD+V+ ++D V GR+GGEEFAA G + Sbjct: 213 LAFLLLDIDDFKRINDSYGHQEGDQVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCN 272 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYV 246 Q A +A L++ I++ ++ S G + +T+S G+ ++ + ++ RAD A+Y Sbjct: 273 AQVAEQIAERLQRQIQH--LSFSHGQQTYGVTVSQGLTGLTDEDVALDSLYARADAAMYQ 330 Query: 247 AKKSGRNRVV 256 AK+ G+N++V Sbjct: 331 AKRQGKNQIV 340 >gi|183221987|ref|YP_001839983.1| hypothetical protein LEPBI_I2628 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912054|ref|YP_001963609.1| GGDEF domain receiver component of a two- component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776730|gb|ABZ95031.1| GGDEF domain receiver component of a two- component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780409|gb|ABZ98707.1| Hypothetical protein LEPBI_I2628 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 406 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 15/173 (8%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y+ +L +D L+ L N F ++L YN LS++ DID FK+IND +GH Sbjct: 125 YSETEKLILVDELTRLYNRRHFETALLREFKQSTRYNLNLSLLIIDIDDFKKINDTYGHL 184 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-I 208 +GD+++ ++ ++ R+GGEEFA S+E +A A K++E + I Sbjct: 185 MGDEILKQIASKISTSLRMEDTACRIGGEEFAIIFPQSNESQALKAAE---KLLEACRTI 241 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260 IS P +TIS G+ K +Y AD+ALY AK +G+N+++ +S+ Sbjct: 242 QISGKP---VTISGGLVSYPEKVKRCEDMYDLADRALYTAKDTGKNQIIVYSN 291 >gi|156935524|ref|YP_001439440.1| hypothetical protein ESA_03386 [Cronobacter sakazakii ATCC BAA-894] gi|156533778|gb|ABU78604.1| hypothetical protein ESA_03386 [Cronobacter sakazakii ATCC BAA-894] Length = 355 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 6/176 (3%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQ 141 ++ +++ L ++ LS +D L+GL N F + + + ++ DID+FK Sbjct: 172 LARQMVQTLIDEKATLNDLSMMDPLTGLCNRRGFENRFANLSPDAGQRFVLLMDIDHFKA 231 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND++GH +GD+ + +S + + V R GGEEF + E+ A + A +R+ Sbjct: 232 YNDHYGHMMGDQALTRVSAAIRDAVRSRDIVTRYGGEEFMVLLTQADEKSARLTAERIRQ 291 Query: 202 IIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + +I + + ++T+S GIA + I + RAD+ALY AK GRN + Sbjct: 292 RVYDLRIPHIFNESVATNVTLSIGIAP-LENDDIEDALRRADEALYAAKNQGRNHI 346 >gi|90022028|ref|YP_527855.1| response regulator receiver modulated diguanylate cyclase [Saccharophagus degradans 2-40] gi|89951628|gb|ABD81643.1| response regulator receiver modulated diguanylate cyclase [Saccharophagus degradans 2-40] Length = 434 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 15/206 (7%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAF 118 G + LV+ +S +IIS I + ++ + NR + LS+ D L+ L N F Sbjct: 96 GGDDYLVKPVSQMIISAKIRAMERITD---MRNQLATLNRELKVLSQRDGLTHLYNRRTF 152 Query: 119 IS------SLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-M 170 + + N+ L+++ DID+FKQ ND +GH GD+ I +S L P Sbjct: 153 EELAEKQWKIATRNKAPLAVLLLDIDHFKQYNDYYGHQQGDRCIQTISSVLAKCVTRPDD 212 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCH 229 +GR GGEEF + E A +A +RK +E QI + PS ++T+S G A + Sbjct: 213 LIGRYGGEEFIILLPNTPENGAHYIAEQIRKSVERLQIKHRASPSNTYVTVSIGGAALNY 272 Query: 230 KEPISTI--IYRADQALYVAKKSGRN 253 + + AD+ALY AK SGRN Sbjct: 273 TTGTTWAHQVGLADKALYTAKASGRN 298 >gi|323495182|ref|ZP_08100266.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546] gi|323310541|gb|EGA63721.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546] Length = 439 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 5/154 (3%) Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+ + N S F L + + L++V DID+FK+IND +GH VGD ++ ++ Sbjct: 264 DPLTKVSNRSHFFEVGERLLRNEEQPLAVVLIDIDHFKKINDKYGHHVGDAALSSFAEIC 323 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 +GR+GGEEFA + + A ++ +R + + G + +TIS Sbjct: 324 CREIRASDVIGRIGGEEFAVILRNVTPEIAHVITERIRNSVAERYFE-ADGVKLLMTISI 382 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ + + ++I AD ALY AK GRNRVV Sbjct: 383 GVVYSEQEHHLESLIKEADSALYQAKAGGRNRVV 416 >gi|308049636|ref|YP_003913202.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] gi|307631826|gb|ADN76128.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] Length = 375 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 11/173 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + ++ +L+ D L+GL L + I D+D+FK ND GH GD Sbjct: 203 MLVVFDGAYRLAFRDGLTGLPARRTLDGDLSDTGALVHIAMLDVDHFKAFNDTHGHTWGD 262 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + L+ +L V G + R GGEEF ++ E LR +E + ++ Sbjct: 263 LALRELATKLRRVKGARAY--RYGGEEFTLVFRKANRTEVVAALEALRVAVEEGTMVVTQ 320 Query: 213 ----GPSIHI----TISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256 G ++ + TIS G+A+R E I T++ RAD ALY AK+ GRNR+V Sbjct: 321 SGKDGNTLPVRASLTISVGVAQRHGQHEQIGTVLKRADMALYRAKEEGRNRIV 373 >gi|255263256|ref|ZP_05342598.1| diguanylate cyclase [Thalassiobium sp. R2A62] gi|255105591|gb|EET48265.1| diguanylate cyclase [Thalassiobium sp. R2A62] Length = 171 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 18/162 (11%) Query: 103 LSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 L+R D L+GL N + G+ +S+V DID FK +ND GH +GD+ Sbjct: 7 LARTDELTGLSNRRDLEISAKRVLLDADRGAV--PVSLVMLDIDRFKAVNDTHGHDIGDQ 64 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 VI L+D L V RLGG+EF + EA L N + + + ++N Sbjct: 65 VIRALADVLKSTCRENDIVARLGGDEFVCVLNNTDASEATALCNRIHEAVAGIRVN---- 120 Query: 214 PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253 + IT+S G+A + H ++ ++ ADQ LY+ K++GRN Sbjct: 121 -ACQITVSIGLAIKPHNRQVALPDMLSLADQCLYIVKENGRN 161 >gi|239907750|ref|YP_002954491.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239797616|dbj|BAH76605.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 289 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 L LV + T ++ +G + ++K L + + SR D LSGL N F+ LG+ Sbjct: 89 LPLVCNTTTRAVTIGCVI-VLMKRLRRALQQEWDNSRQDLLSGLWNRRYFLE-LGATILT 146 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ +++ F D+D FK++ND GH VGD ++ ++ + F + RLGG+EF Sbjct: 147 FAKRHDLPVTMAFMDLDRFKEVNDTLGHAVGDDLLRTVAAAMRAHFRYEDLLARLGGDEF 206 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQ------INISSGPSIHITISAGIAERCHKEPIS 234 AA G + Q+A LR I + + +S G + + GI + Sbjct: 207 AAIMPGMTAQDAQTRLESLRDKIREAMDQRRWPVTLSIGAVSFVVVEGGIED-------- 258 Query: 235 TIIYRADQALYVAKKSGRNRVV 256 ++ AD +Y AK +GR+R+V Sbjct: 259 -MVSAADAVMYEAKAAGRDRLV 279 >gi|197334716|ref|YP_002157056.1| sensory box/ggdef family protein [Vibrio fischeri MJ11] gi|197316206|gb|ACH65653.1| sensory box/ggdef family protein [Vibrio fischeri MJ11] Length = 631 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 92/194 (47%), Gaps = 25/194 (12%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---------EKLSI 131 ++ YI + KEL + LS D LSG N F L + + + Sbjct: 450 IISYIDITKRKEL---EKELRYLSEKDVLSGCWNRRKFEFELENQTLLTQRYYPVHQCCL 506 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID FK+IND GH VGD+VI +SD L FV R+GGEEFA ++ + Sbjct: 507 AILDIDLFKRINDTKGHDVGDQVIRLVSDILNNGSRETDFVARIGGEEFAIIMPHTTLID 566 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKK 249 A ++ N LR + +S H+TIS G+ + R K+ AD ALY +K Sbjct: 567 AEMVINRLR-------VAVSQLEEYHVTISGGLTDLGRSKKDAYKC----ADLALYESKT 615 Query: 250 SGRNRVVCFSDIEN 263 +GRN+V S +E+ Sbjct: 616 NGRNQVSICSSLED 629 >gi|168214362|ref|ZP_02639987.1| GGDEF domain protein [Clostridium perfringens CPE str. F4969] gi|170714161|gb|EDT26343.1| GGDEF domain protein [Clostridium perfringens CPE str. F4969] Length = 299 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 4/129 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188 +++ DID FK++ND +GH VGDK++ + +L + ++GR GGEEF ++ Sbjct: 172 TVIMADIDSFKKVNDTYGHLVGDKILRDFAKELNNNIRENSDWIGRYGGEEFIIVLNNTN 231 Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247 + +A LRKIIE +++ G S+ IT S G+ E KE I AD+ LY+A Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289 Query: 248 KKSGRNRVV 256 K +GRN+ V Sbjct: 290 KMTGRNKTV 298 >gi|319427747|gb|ADV55821.1| diguanylate cyclase with PAS/PAC sensor [Shewanella putrefaciens 200] Length = 324 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 84/170 (49%), Gaps = 9/170 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L + ++ +LS+ D L+ L N + L YN+ S+V DID FK IND Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQLCLEHEFDLYARYNDIASLVMIDIDNFKYIND 203 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GDKVI ++ L GR GGEEFA +S ++A LR+ I Sbjct: 204 TYGHVAGDKVIQHIAHILSQSLRETDCAGRYGGEEFAVVMPKTSGEDALHFTERLREKIA 263 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 S I + I +T+S G+ E H S I +D+ALY AK+ GRN Sbjct: 264 ESTI-VYESLKIKVTVSLGVCEIGKHISSSSNWISCSDKALYEAKQKGRN 312 >gi|119898981|ref|YP_934194.1| GGDEF family protein [Azoarcus sp. BH72] gi|119671394|emb|CAL95307.1| GGDEF family protein [Azoarcus sp. BH72] Length = 610 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 83/172 (48%), Gaps = 20/172 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 + S+L R D L+G LN +L + L + D+D FKQ+ND +GH Sbjct: 443 DETSELVRHDPLTGALNRKGLDEALAREIARARRHGSPLCLALLDVDNFKQLNDTYGHRA 502 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI-----IE 204 GD + L + VGR GGEEF + +EQ AA++ R++ + Sbjct: 503 GDDALRHLFSVIREAVRPQDAVGRYGGEEFLIVLPDTDTEQAAAVVVRLQRELTRRFFLA 562 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 NSQ + IT SAGIA E I RAD+A+Y AK++G+NRV+ Sbjct: 563 NSQ-------KLLITFSAGIARLHADEDPQLAIDRADKAMYAAKRAGKNRVL 607 >gi|158315645|ref|YP_001508153.1| serine/threonine protein kinase [Frankia sp. EAN1pec] gi|158111050|gb|ABW13247.1| serine/threonine protein kinase [Frankia sp. EAN1pec] Length = 1726 Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 13/176 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 ++L + R+ QLSR D L+GL N L + ++ +++ DID+FK N Sbjct: 1543 QQLAAANRRLEQLSRTDSLTGLANRRRLEEVLDAEWHRARLHSTPIALAMIDIDHFKLYN 1602 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+FGH GD+ + ++ L R GGEEFA + + A LA LR+ + Sbjct: 1603 DHFGHTAGDRCLQRVAAGLAASLRPTHMAARFGGEEFAVVMPDTGAETAVELARQLRRAV 1662 Query: 204 ----ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E + I ++ I ++A I + + ++ + RAD LY AK+ GR+RV Sbjct: 1663 AGLAEPHPLVIHRIVTVSIGVAATIPDP--GDEVAAFVERADIELYRAKRGGRDRV 1716 >gi|330967039|gb|EGH67299.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 730 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 21/209 (10%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 G +L ++ + ++ T LL+ + + +L + +I L+ D L+GL N S + Sbjct: 246 GAPLVLDVSVEFITLNNTACLLM---NARDIGQLKSAQAQIQHLAYHDPLTGLPNRSLLM 302 Query: 120 SSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L V Sbjct: 303 DRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTV 362 Query: 173 GRLGGEEFAA---AALGSSEQ---EAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225 RLGG+EF GS EQ + +LA++LR ++ ++ G + +T S GI Sbjct: 363 ARLGGDEFVVLICGLDGSLEQVTHQVRVLADNLRVLL--AEPMFLDGHRLQVTPSVGIVL 420 Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRN 253 P + ++ RAD ALY AK SGRN Sbjct: 421 IPDDGLTP-ADLLKRADTALYRAKDSGRN 448 >gi|241662150|ref|YP_002980510.1| diguanylate cyclase [Ralstonia pickettii 12D] gi|240864177|gb|ACS61838.1| diguanylate cyclase [Ralstonia pickettii 12D] Length = 480 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 17/213 (7%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLL 113 L P+ L +I+ L +S++++ G ++ L+ ++ N + +L++ D L+GL Sbjct: 267 LAPWQRLSWIV----GLSSLSVSLAFCAGVWLLAFALRGRVMAENHLRELTQTDPLTGLK 322 Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N A L + +LS++F D D+FK+ ND GH GD + +L+ Q + Sbjct: 323 NRRALDVALENEWDRLQRNDSRLSVLFIDADHFKRYNDAHGHAQGDVALQYLA-QCISKH 381 Query: 167 GTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG- 223 R GGEEF + E A +A +R +E + + T+S G Sbjct: 382 ARRRGDLAARYGGEEFVVLLPDTGEAGATRIAEAIRAEVEGAGAPVGDTGLAPFTVSVGC 441 Query: 224 -IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 A R ++ + AD ALY AK+ GRNRV Sbjct: 442 ATARRASFPSLNALTKAADDALYEAKRKGRNRV 474 >gi|254470292|ref|ZP_05083696.1| sensory box/ggdef family protein [Pseudovibrio sp. JE062] gi|211960603|gb|EEA95799.1| sensory box/ggdef family protein [Pseudovibrio sp. JE062] Length = 1031 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 90/174 (51%), Gaps = 15/174 (8%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVF-FDIDYFKQINDNFGHPV 150 RI L++ D L+GL N + F I + E +S V D+D FK IND +GHPV Sbjct: 562 RILHLAQHDMLTGLPNRTYFRERFQQAIENQACAEETISAVMVLDLDRFKDINDLYGHPV 621 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE--NSQ 207 GDK+I ++ +L V RLGG+EFA + + E +L N KIIE + Sbjct: 622 GDKLIQTVARRLNACVTHHDTVARLGGDEFAIIQVNLKTTAEVGLLTN---KIIEVLSKP 678 Query: 208 INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I++ + +I + S GIA H ++ +AD ALY AK++GRN F D Sbjct: 679 IHVGNNITIRTSASIGIALIPEHGTDPDELMSKADIALYEAKEAGRNTFAFFED 732 >gi|190573463|ref|YP_001971308.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a] gi|190011385|emb|CAQ45000.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a] Length = 807 Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 8/135 (5%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 ++ + ++D+FK +ND+FGH GD+++ +D LV +VGRLG +EFA + + Sbjct: 400 ALCYINLDHFKLVNDSFGHAAGDQMLRSFADYLVAAVRDGDWVGRLGADEFAVFLAHAGQ 459 Query: 190 QEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALY 245 EA + L+++I N + IS G S ++ S G+ E P ++ ++ AD A Y Sbjct: 460 DEAKRV---LQRVIRNLGQATFPISEG-SPQLSCSIGVVEVSADAPDVNWLMSAADSACY 515 Query: 246 VAKKSGRNRVVCFSD 260 AK++GRNRV CF++ Sbjct: 516 AAKQAGRNRVHCFNE 530 >gi|186473968|ref|YP_001861310.1| diguanylate cyclase [Burkholderia phymatum STM815] gi|184196300|gb|ACC74264.1| diguanylate cyclase [Burkholderia phymatum STM815] Length = 504 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 13/177 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142 L++ ++ +R+++L++ D L+GL N A L + E+L S+++ D D+FKQ Sbjct: 318 LRDRALAEDRLTELTQTDSLTGLKNRRALDEVLEAEWERLQRTASCLSVLYVDADHFKQY 377 Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GDK + L+D + R GGEEF + AA +A +R+ Sbjct: 378 NDKYGHAAGDKALKHLADCIAQRACRRSDCAARYGGEEFVVVLPDTDAANAARVAEGIRE 437 Query: 202 IIENS-QINISSGPS-IH-ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 +E S +G + +H T+S G A R + + AD ALY AK +GRN Sbjct: 438 ALERSWHARHEAGTAELHPFTVSVGCATGRRGCPATLDELTKAADLALYEAKNAGRN 494 >gi|330810802|ref|YP_004355264.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378910|gb|AEA70260.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1092 Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 19/196 (9%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 + ++ T LLL S+L+ + +I L+ D L+ L N + I+ L Sbjct: 632 ITLNETACLLLTARDVSLLRN---AEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKR 688 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-- 182 +N + +++F D+D+FK IND+ GHPVGD V+ ++ +L V RLGG+EF Sbjct: 689 HNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 748 Query: 183 AALGSSEQEAA----ILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237 + L S E + LA+ LR+++ S+ G + +T S GIA H + ++ Sbjct: 749 SGLEGSRNEVSKQVRTLADTLRELL--SEPMFLDGQRLQVTPSIGIALIPDHGSTPTDLL 806 Query: 238 YRADQALYVAKKSGRN 253 RAD ALY AK SGRN Sbjct: 807 KRADIALYRAKDSGRN 822 >gi|324113194|gb|EGC07169.1| GGDEF domain-containing protein [Escherichia fergusonii B253] Length = 410 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+GLLN F S G ++ S++ D D FK +ND +GH GD Sbjct: 249 LEQAAMRDALTGLLNRRQFFLLTEHNSSQPGLMSQDYSLLLIDTDRFKSVNDLYGHQKGD 308 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+ L V R GGEEF ++ +A LA +R + ++I ++ Sbjct: 309 DVLCVLARTLESCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIRAQV--AKITLTG 366 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 P T+S G+A E I + R D ALY AK GRNRV+ Sbjct: 367 LP--RFTVSIGVARHEIDETIDALFKRVDDALYRAKNDGRNRVLA 409 >gi|299133186|ref|ZP_07026381.1| diguanylate cyclase [Afipia sp. 1NLS2] gi|298593323|gb|EFI53523.1| diguanylate cyclase [Afipia sp. 1NLS2] Length = 563 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 10/184 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 +EL + +R+ ++ +D +SGL N + L K +S++ D+D+FK N Sbjct: 372 RELVATNDRLQVMASVDMISGLANRRGLQNRLEFEWRKAEQTGGPVSLIMIDVDHFKLFN 431 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GDK + + + L + G F R GGEEF ++ A + +R + Sbjct: 432 DTYGHLEGDKCLRQIGEALAAIAGEVTGFAARYGGEEFCLLLPKTNGIAAMEIGERVRAV 491 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSD 260 +E I S +T+SAG+A + S +I AD ALYVAK GRN VV + Sbjct: 492 VEALNIPHSMSAFQQVTVSAGMAAVAPGQAASVQDLIEAADAALYVAKHRGRNNVVAHAL 551 Query: 261 IENN 264 I ++ Sbjct: 552 IRSD 555 >gi|254498802|ref|ZP_05111513.1| hypothetical protein LDG_2883 [Legionella drancourtii LLAP12] gi|254351966|gb|EET10790.1| hypothetical protein LDG_2883 [Legionella drancourtii LLAP12] Length = 815 Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 21/179 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 + E I+ +I QL+ D L+GL N I+S ++ ++++F D+D FK + Sbjct: 640 INERIINREKIYQLAYHDILTGLPNRQLLLDRLNQAIASAKHHHRFMALMFVDLDKFKHV 699 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201 ND GH GDK++ +S +L + + R GG+EF SS Q+AAILA+ K Sbjct: 700 NDTLGHDAGDKLLKEMSTRLCCSVRSQDTIARTGGDEFVIILTEISSPQDAAILADKFLK 759 Query: 202 II------ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I+ ++ Q+ I++ I I + G+ + ++ +AD A+Y++K +GR+R Sbjct: 760 IVKKPLSLQDQQLQITASIGIAIYPNNGLDA-------AELMKKADMAMYMSKDAGRDR 811 >gi|297584366|ref|YP_003700146.1| GAF sensor-containing diguanylate cyclase [Bacillus selenitireducens MLS10] gi|297142823|gb|ADH99580.1| diguanylate cyclase with GAF sensor [Bacillus selenitireducens MLS10] Length = 517 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 13/185 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNE------KLSIVFFDID 137 G++ E + Y R +L D L+ L N ++ ++ Y + L+++ D+D Sbjct: 327 QGAMAIENAVLYERTQELVMTDGLTRLRNKR-YLETITQDLYTDAKLQCIPLAVMMIDLD 385 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 YFK ND GH +GD+V+ +++ L + R GGEEF G S+ A LA Sbjct: 386 YFKVYNDTNGHLMGDQVLLQVAEILSDLTPDEGVAIRFGGEEFCVILPGYSKSHALTLAE 445 Query: 198 DLRKII-ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 ++RK I E + P ++ S G++ C +EP ++I ADQA+Y +KK+GRNR Sbjct: 446 NIRKTINEYPFKSRERQPDGALSASIGLSSYPDCIQEP-ESLIETADQAVYASKKNGRNR 504 Query: 255 VVCFS 259 V FS Sbjct: 505 VTVFS 509 >gi|153006978|ref|YP_001381303.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] gi|152030551|gb|ABS28319.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] Length = 312 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 12/160 (7%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N L S + +LS++ D+D+FK +ND GH GD+ + ++ Sbjct: 140 DPLTGLFNRRHLEERLASELAAAQRHGRELSLLLVDVDFFKAVNDRHGHLAGDEALKMVA 199 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-----NISSGP 214 L + R GGEEF A + Q A LA +R+ +E S+ ++ Sbjct: 200 FVLRGAIRKEDVLARYGGEEFIVIARETGLQGARALAERIRRAVERSRCAWHGHDLGLTV 259 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 SI +T+S G+AE ++ AD+ALY+AK++GRNR Sbjct: 260 SIGVTVSIGLAEYVPGRSDRELLETADRALYLAKQAGRNR 299 >gi|209549574|ref|YP_002281491.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535330|gb|ACI55265.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 417 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 12/187 (6%) Query: 89 ILKELF-ISYNRIS--QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 IL+EL + +RI Q + D L+ + AF IS + LS + FDID+ Sbjct: 154 ILQELAGAAMDRIELVQSAATDSLTEAMTRRAFKQEADQLISLALRHQHDLSCIAFDIDH 213 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK++ND +GH GD V+ ++ GR+GGEEFA + A +A Sbjct: 214 FKKVNDTYGHAAGDAVLKAVASICKATLRAGDLFGRIGGEEFAVILPHVDREGAFAVAEK 273 Query: 199 LRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 LR I I G S+++T S G A + I T++ +AD A+Y AK +GRNR V Sbjct: 274 LRAAIAAQPIRGDHG-SLNVTASFGTSALSIVSKEIETLLAQADAAMYQAKHAGRNRCVS 332 Query: 258 FSDIENN 264 +S I + Sbjct: 333 WSSIHAD 339 >gi|118593438|ref|ZP_01550818.1| putative kinase/esterase [Stappia aggregata IAM 12614] gi|118433917|gb|EAV40575.1| putative kinase/esterase [Stappia aggregata IAM 12614] Length = 759 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 103/214 (48%), Gaps = 30/214 (14%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 + PF L ++ + V+I++TI + + K L S R SR D LSGL N Sbjct: 278 INPFLALAAFMI---AAVVIAVTI------FTHQMTKRLAHSEARAVHASRHDALSGLPN 328 Query: 115 HSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 + F + L E+ ++V+ D+D+FK IND GH GDKVI ++ +L V Sbjct: 329 RARFHTLLTETLEESAAEGTNTAVVYIDLDHFKDINDTLGHSAGDKVITAVAQRLHRVIP 388 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-----PSIHITISA 222 V R+ G+EF A + + E + L I++ Q I +H ++S Sbjct: 389 DTGIVARISGDEF-AMVIRNCEDDVW-----LEYILDQVQDEIGRPIMIGRRELHASLSM 442 Query: 223 G--IAERCHKEPISTIIYRADQALYVAKKSGRNR 254 G +A R +P ++ +AD ALY AK +GRNR Sbjct: 443 GAAVAPRDGNDP-DELLRKADIALYDAKANGRNR 475 >gi|21107752|gb|AAM36438.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1009 Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 8/174 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +L L I + + + D L+GL N F IS L + DID+FK+ Sbjct: 834 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 893 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND++ H GD V+ + L RLGGEEFA ++ EA L +R Sbjct: 894 INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEAQALCLRIRA 953 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +++ N S + +T SAG+A ++ S+++ RAD ALY AK +GR+R+ Sbjct: 954 LF-HARHNWGSVEGLQVTFSAGVAALRDEDTGSSLMQRADHALYEAKSAGRDRI 1006 >gi|77748595|ref|NP_641902.2| hypothetical protein XAC1570 [Xanthomonas axonopodis pv. citri str. 306] Length = 1013 Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 8/174 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +L L I + + + D L+GL N F IS L + DID+FK+ Sbjct: 838 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 897 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND++ H GD V+ + L RLGGEEFA ++ EA L +R Sbjct: 898 INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEAQALCLRIRA 957 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +++ N S + +T SAG+A ++ S+++ RAD ALY AK +GR+R+ Sbjct: 958 LF-HARHNWGSVEGLQVTFSAGVAALRDEDTGSSLMQRADHALYEAKSAGRDRI 1010 >gi|89072919|ref|ZP_01159476.1| hypothetical GGDEF family protein [Photobacterium sp. SKA34] gi|89051441|gb|EAR56896.1| hypothetical GGDEF family protein [Photobacterium sp. SKA34] Length = 413 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 21/176 (11%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +L+ ID L+ + A + L ++ D+D+FK+ ND +GH GD V+ ++ Sbjct: 237 ELAFIDQLTEIPGRRALDNELKHLGRTYTLAMIDVDHFKKFNDKYGHDTGDDVLKLVATL 296 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210 L + G R GGEEF G S E +LR+ IE ++ I Sbjct: 297 LKGIDGGGN-AYRYGGEEFTILFKGKSIDECLPFLEELREKIEKYKMIIRDHDKRPTSNR 355 Query: 211 ---------SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + S+ +T+S G+AE ++ ++ AD ALY AK++GRNRV C Sbjct: 356 AGSKARGQDKTSKSVKVTVSIGVAENYLEQEPEDVLKHADNALYQAKEAGRNRVQC 411 >gi|327478618|gb|AEA81928.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 456 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 68/134 (50%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N ++ D+D+FK+IND GH GD+++ + L + RLGGEEF + Sbjct: 322 NNTFGVLAIDVDHFKRINDTHGHDAGDQILQQVGALLASNTRGGDYAFRLGGEEFLLVLV 381 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 +A A LR+ I +SSG + +T+S G+A ++ +ADQALY Sbjct: 382 DIDTNKALAAAEKLRERIAREHFRLSSGEVLQVTVSIGMAVHDGHPDYERLLQQADQALY 441 Query: 246 VAKKSGRNRVVCFS 259 AK GRNR V ++ Sbjct: 442 QAKHGGRNRCVLYA 455 >gi|326319533|ref|YP_004237205.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376369|gb|ADX48638.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 407 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 14/179 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIND 144 +L + I +L+ D L+GLLN + + ++S I D+D+FK +ND Sbjct: 213 DLARALEHIRELATHDELTGLLNRRHMLELMRLEQRRVSRSDFPLVIALLDVDHFKAVND 272 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+V+ + + + R GGEEF + + A L +R+ + Sbjct: 273 THGHAAGDRVLQAFAQAVRRCVRDGDVISRWGGEEFVLMLCNTPPEAARALLERVREAVA 332 Query: 205 NSQINISSGPS-------IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G + IT+S G A + PI + RAD+ALY AK GRNR V Sbjct: 333 ALSVPADRGDGAGASAGHLRITVSIGFALHRPRHPIEETLERADRALYAAKLGGRNRTV 391 >gi|213969908|ref|ZP_03398041.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] gi|213925233|gb|EEB58795.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] Length = 553 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 11/170 (6%) Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND+FGH GD+ + L+ Sbjct: 361 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 420 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A ++ + I + QI + P + Sbjct: 421 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAENILQAIRDEQITHPASPFGIV 480 Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A IS +I AD+ALY AK GRNRV S+I NT Sbjct: 481 TVSLGVATVVGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIAFNT 530 >gi|221066436|ref|ZP_03542541.1| diguanylate cyclase [Comamonas testosteroni KF-1] gi|220711459|gb|EED66827.1| diguanylate cyclase [Comamonas testosteroni KF-1] Length = 405 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 15/159 (9%) Query: 106 IDCLSGLLNHSAFISSLGSY--NEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 +D L+ +LN AF + +++L +++ DID+FK+INDN+GH GD+V+ ++ Sbjct: 227 LDALTQILNRRAFREAAQHRLSDQRLYPMALLASDIDHFKRINDNWGHDKGDEVLQLVAR 286 Query: 161 QLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + + V R GGEEF L +EQ A + +LR N Q + +GP+ Sbjct: 287 AMQHNVRSNDLVARFGGEEFMVLLTKIDLQGAEQVATRIGLELR----NDQEVLPNGPA- 341 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S GI + E + + +ADQ LY AK +GR+RV Sbjct: 342 -LTLSFGITSISNAEQLEGALRQADQLLYSAKNAGRDRV 379 >gi|332531374|ref|ZP_08407280.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624] gi|332039191|gb|EGI75611.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624] Length = 270 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 29/215 (13%) Query: 66 VENLSLVIISITISLL-----LGYISGSILKE-------LFISYNRISQLSRIDCLSGLL 113 + LS I S+T +LL L ++ S+ ++ L I+ + +L+ +D L+G+ Sbjct: 61 IRELSASIQSMTGALLRHETELETLNASLEQQVHERTEALSIANQELERLATVDGLTGVH 120 Query: 114 NHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N F + LG ++ DID+FK IND GH GD+V+ L L Sbjct: 121 NRRRFDARIKEAFQLLGRSERGFGLLLLDIDHFKSINDRHGHQAGDEVLRRLGQLLTQST 180 Query: 167 GTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSI-HITISAGI 224 FV R GGEEF + E +A +R + + P++ +T+S G+ Sbjct: 181 RVTDFVARYGGEEFVVLLPECMDPNEGWAVAEKIRAAVAATPF-----PAVGQVTVSVGL 235 Query: 225 AERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257 + H++ S +I RADQALY AK GRNRV+ Sbjct: 236 S-LAHRDDASAEAVISRADQALYEAKAQGRNRVLA 269 >gi|328543420|ref|YP_004303529.1| Response regulator containing a chemotaxis protein CheY doma in and a GGDEF domain [polymorphum gilvum SL003B-26A1] gi|326413165|gb|ADZ70228.1| Response regulator containing a CheY-like receiver doma in and a GGDEF domain [Polymorphum gilvum SL003B-26A1] Length = 300 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 12/163 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+ L N AF+ + + +S++ DID+FK IND GH VGD V+ Sbjct: 131 RLATRDPLTELFNRRAFLDAAQKHIRDASDLIPVSVILLDIDHFKAINDAHGHAVGDLVL 190 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++ ++ + GRLGGEEFA G + +A I A LR ++ + + Sbjct: 191 RAVAE---ILARSNELAGRLGGEEFAVIEPGCTATQACIRAEVLRADLQRVDVR-HADAV 246 Query: 216 IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G+AE ++ + AD A+Y AK+ GRNRVV Sbjct: 247 IPVTVSLGVAEVPIGREDAFDYALCLADAAMYEAKRLGRNRVV 289 >gi|294339393|emb|CAZ87749.1| hypothetical protein; PAS and GGDEF domains [Thiomonas sp. 3As] Length = 473 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 9/166 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHP 149 ++ R+ + D L+G+L A + L + ++ L++ F D+D FKQIND GH Sbjct: 292 THARLLHRAERDALTGVLTRRAIMERLDTALARRTRDDMLALCFIDLDGFKQINDRLGHV 351 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+++ ++ + V +GR+GG+EF A + + A LA L ++ + + Sbjct: 352 RGDRLLVQVAHAMQDVLRRDDAIGRIGGDEFVALSAVADLSAAQSLAAKLVEVCAAAGYD 411 Query: 210 ISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNR 254 + SG + +T S G+ A H ++ RAD A+YVAK+ G+NR Sbjct: 412 LLSG--MRVTASIGVAAAPTHARSSFELLQRADDAMYVAKQQGKNR 455 >gi|156975277|ref|YP_001446184.1| hypothetical protein VIBHAR_03006 [Vibrio harveyi ATCC BAA-1116] gi|156526871|gb|ABU71957.1| hypothetical protein VIBHAR_03006 [Vibrio harveyi ATCC BAA-1116] Length = 520 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 8/153 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GLLN ++ ++ + S++ DIDYFK+IND +GH GD ++A L+ + Sbjct: 366 DSLTGLLNRRGIDKAIEDFHSQSIPFSVLALDIDYFKRINDTYGHDTGDILLARLAKLIK 425 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V R GGEEF ++ +A ++ +R+ +E+ + + ++TIS G Sbjct: 426 AQARDVDTVCRCGGEEFLVFLRNTNMSQAKCISERIRRSVESHEYDGIG----NVTISIG 481 Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 IA E I+ +I AD ALY AK++GRNR Sbjct: 482 IAHWDGEGELINRVIKNADDALYQAKRNGRNRT 514 >gi|86357267|ref|YP_469159.1| response regulator PleD [Rhizobium etli CFN 42] gi|86281369|gb|ABC90432.1| two-component response regulator protein [Rhizobium etli CFN 42] Length = 457 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 11/176 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 L S + +L+ D L+GL N + L + LS++ DID FKQ+ND Sbjct: 280 RLRASVKQTIELAVTDPLTGLYNRRYLDNHLNVLFNRSMARGRPLSVLITDIDRFKQVND 339 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ ++++ R GGEEF +S + AA +A LR +E Sbjct: 340 TYGHDGGDEVLREFANRVRSTIRGADLACRYGGEEFVVVMPDTSPEVAAAVAERLRAAVE 399 Query: 205 NSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 ++ + S ++ +T S GIA R P ++ +AD ALY AK +GRNRVV Sbjct: 400 SAPFMLKRSSEALSVTASFGIASRIGAVLTP-DQLMKQADLALYEAKNTGRNRVVA 454 >gi|77458016|ref|YP_347521.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas fluorescens Pf0-1] gi|77382019|gb|ABA73532.1| putative GGDEF domain regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 794 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 14/206 (6%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P GL ++ E + + L GYIS + +L + LS D L+G+ N Sbjct: 591 PERGLRWVRGEATPEELPGGGV-LWHGYISD--ISDLKRVEEELRALSVTDSLTGIHNRR 647 Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F L + + LS++ DID+FK+IND +GH VGD+V+ + +++ Sbjct: 648 YFQERLTTEMARVERGGGELSVIMLDIDHFKRINDQYGHAVGDRVLQAVCERIGHRLRRT 707 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 RLGGEEF A +LA +L + ++ I++ +T S GIA Sbjct: 708 DVFCRLGGEEFMVLCPDIDGDHAHMLAEELWHSLRSAPIDVVGV----VTASFGIASWRP 763 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 E ++ RAD +Y AK+ GR+RV Sbjct: 764 GEGADALLLRADSGVYAAKQGGRDRV 789 >gi|238797835|ref|ZP_04641328.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969] gi|238718363|gb|EEQ10186.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969] Length = 372 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 4/170 (2%) Query: 91 KELFI-SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 KE +I +Y + + ID L+ L N ++ ++++ S + ++ D+D+FK +ND + Sbjct: 180 KERYIYAYFAMKNRANIDKLTQLNNRASVDYRLNTIHSSRQACGLMILDLDHFKLVNDTY 239 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD ++ + L FVGR GGEEF Q +A + + +EN Sbjct: 240 GHDGGDLLLTEVGKLLTSSVRDEDFVGRFGGEEFIVITHSHDPQTIKTVAERICQRVENL 299 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + G + TIS G + + + D+ALY AKK GRN+VV Sbjct: 300 NVELPDGRKVKTTISIGASLYLPGMSMLKAMKMTDEALYQAKKQGRNQVV 349 >gi|296272790|ref|YP_003655421.1| chase2 sensor-containing diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296096964|gb|ADG92914.1| diguanylate cyclase with Chase2 sensor [Arcobacter nitrofigilis DSM 7299] Length = 589 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 76/260 (29%), Positives = 122/260 (46%), Gaps = 41/260 (15%) Query: 29 IYFSIFFS---------IFIATVI-FIANIFLFYIGLTPFYGLEYILVENLSLVIISITI 78 + FS++FS +F T++ F+ I +I L FY L NL I++I Sbjct: 342 VLFSLYFSSRKNIYKKGVFTVTLLAFVMTIVYGFISLKFFY-----LQSNLFFSILTIIF 396 Query: 79 SLLLGYIS---------GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 S++ I+ ++KE YN + D L+GLLN F Y E Sbjct: 397 SIVFTVINHQSSLSKYNQRLIKETKKLYNE----ANCDSLTGLLNRRGFDEQYIKYKEIT 452 Query: 130 SIVFF--------DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEF 180 + F D+D+FK++ND +GH +GD V+ + +L+ + + V R GGEEF Sbjct: 453 QLKSFQSTCLAVMDLDFFKRVNDTYGHDIGDLVLQKFA-KLLKEYSRDIDVPARWGGEEF 511 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYR 239 ++ E+ I+ N +R++ I G + IT+S G+ + I + + + Sbjct: 512 VILLRNTTIDESIIILNRIRELCMEMDIKTPQGI-LKITVSTGVTVIEDFSKTIDSYVKK 570 Query: 240 ADQALYVAKKSGRNRVVCFS 259 AD LY AK++GRNR VC S Sbjct: 571 ADIGLYQAKEAGRNR-VCIS 589 >gi|239947824|ref|ZP_04699577.1| regulatory component of sensory transduction system [Rickettsia endosymbiont of Ixodes scapularis] gi|239922100|gb|EER22124.1| regulatory component of sensory transduction system [Rickettsia endosymbiont of Ixodes scapularis] Length = 450 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N F I + KL ++ DID FK +ND +GH GDKV+ Sbjct: 287 LAAKDGLTGLFNRRYFDIHLKQMIEKANKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVL 346 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214 +S L + R GGEEF +A A +R IE +I Sbjct: 347 TIVSRILKNTLRITDLIARFGGEEFIILLTDIDISKAIETAERVRVKIECMDFHIEDQIE 406 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + TIS G+ E +E I + I RAD+A+Y AK +G+N+VV Sbjct: 407 PLKKTISIGVTEYKKEESIESFIERADKAMYEAKTTGKNKVV 448 >gi|254504372|ref|ZP_05116523.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222440443|gb|EEE47122.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 365 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 17/170 (10%) Query: 106 IDCLSGLLNHSAFISSLGSYNEKL-----------SIVFFDIDYFKQINDNFGHPVGDKV 154 ID L+ L N F +SL EK+ +++ DID+FK+ ND +GH GD+V Sbjct: 191 IDELTTLNNRKHFDNSL----EKVIRNSIESGRGFALLMTDIDHFKKFNDTYGHQTGDQV 246 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSG 213 + ++ + + R GGEEFA ++ EA +A +R ++ + S+G Sbjct: 247 LRLVALSVKQNISSQDVACRYGGEEFAIILPHAALDEAVEVAEKIRAAVMAKELVKRSTG 306 Query: 214 PSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ ITISAG+A + TI+ RAD+A+Y AK +GRN V +D+E Sbjct: 307 ENLGRITISAGVAAYNPDDNEHTIVSRADEAMYAAKNAGRNLVKTENDLE 356 >gi|89095101|ref|ZP_01168028.1| GGDEF family protein [Oceanospirillum sp. MED92] gi|89080662|gb|EAR59907.1| GGDEF family protein [Oceanospirillum sp. MED92] Length = 329 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 21/169 (12%) Query: 107 DCLSGLLNHSAFISSLGSY----NE-----------KLSIVFFDIDYFKQINDNFGHPVG 151 D L+GL N AF + + NE DID+FKQ+ND++GH G Sbjct: 145 DALTGLSNRQAFDQQINNLLFENNEIKRRSSDCELNNWCFALLDIDHFKQVNDDYGHLFG 204 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ S + F + R GGEEFA A S + A + + R ++ N++ Sbjct: 205 DEVLLIFSQLMQKTFRDGDLLFRYGGEEFAVALKDVSLESAVKVLDRFRNVVSNAEF--- 261 Query: 212 SGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P + +T+S G+ +I RADQALY AK+ GRN+V F Sbjct: 262 --PQLGQVTVSIGVTSIEDGLSTPLLIDRADQALYFAKEHGRNQVHSFE 308 >gi|293610320|ref|ZP_06692621.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827552|gb|EFF85916.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 627 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + ++ LS D L+ L N +S ++K++ ++ D+D FK +ND Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH VGD+++ ++++L + R+GG+EF A ++ EA ILA + ++I+ Sbjct: 306 AFGHHVGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTNADEAVILAEKVLQLIQ 365 Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S QI SG I+I+ S G+A H + + ++ AD A+ ++K+ GRN FS Sbjct: 366 ESYQI---SGKEINISASLGVALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTIFS 419 >gi|148975465|ref|ZP_01812336.1| sensory box/GGDEF family protein [Vibrionales bacterium SWAT-3] gi|145964893|gb|EDK30144.1| sensory box/GGDEF family protein [Vibrionales bacterium SWAT-3] Length = 634 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 84/175 (48%), Gaps = 20/175 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSY--NEKLSIVFFDIDYFKQINDNFGH 148 N++ LS D L+G N F S + Y E + DID+FK+IND FGH Sbjct: 465 NKLRNLSEKDALAGCWNRRKFDLELRDECSRINRYPTREHSCLAILDIDHFKRINDRFGH 524 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+VI ++ L FV R+GGEEF ++ +EA + N LR I Sbjct: 525 DYGDRVIQTVAQVLQRECRETDFVARIGGEEFGVILPHTTTEEADYVLNRLR-------I 577 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIE 262 +S +T+SAGI ++ Y+ AD ALY AK +GR+ V F D E Sbjct: 578 AVSLELDSVVTVSAGITNLTSDPALN---YKCADLALYEAKAAGRDSVCLFLDTE 629 >gi|157164317|ref|YP_001467178.1| threonine dehydratase [Campylobacter concisus 13826] gi|112801352|gb|EAT98696.1| diguanylate cyclase [Campylobacter concisus 13826] Length = 418 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 10/172 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 E + N+I+ + D L+G N F + Y +E + DID+FK+IND Sbjct: 245 EAMENINKIANFANRDFLTGAYNRRFFYQDIEEYVQAAEELDEPYAFAMLDIDHFKKIND 304 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GDK++ L+ L V R GGEEF +++EA +LR + Sbjct: 305 TYGHDGGDKILKSLAKILTDNTKGRDVVARFGGEEFCVVLKKIAKEEAIKFFVNLRAKVA 364 Query: 205 NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ I + +T+S GI+ + H E I ++ D ALYVAK++GRNRV Sbjct: 365 ENEV-IIKDKIVRVTVSIGISFGKGHCE-IDDMLEACDSALYVAKENGRNRV 414 >gi|300713176|ref|YP_003739215.1| diguanylate cyclase [Erwinia billingiae Eb661] gi|299060247|emb|CAX53497.1| diguanylate cyclase [Erwinia billingiae Eb661] Length = 529 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 85/166 (51%), Gaps = 11/166 (6%) Query: 98 NRISQLS---RIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGD 152 N++S L+ R D L+GLLN F + + + S + DID+FK+IND GH GD Sbjct: 353 NQVSSLTDETRTDPLTGLLNRRGFTTFIRQHARTHSHCAIAVDIDHFKKINDRLGHDAGD 412 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+ L + V R GGEEF + +AA A +R ++E S + Sbjct: 413 AVLISLAGLLRSACRSSDIVSRSGGEEFVIFLPDTQLPDAAATAERIRHLVETSVFPYAG 472 Query: 213 GPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 IT+SAG+A + ST + +AD ALY AK +GRN V+ Sbjct: 473 ----QITVSAGVAALIDVQGSSTEGLFRQADMALYEAKGAGRNIVI 514 >gi|238761920|ref|ZP_04622894.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638] gi|238700034|gb|EEP92777.1| Diguanylate cyclase [Yersinia kristensenii ATCC 33638] Length = 409 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 14/166 (8%) Query: 107 DCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N + F L N+ +++F D D+FK+INDN+GH GD V+ ++D Sbjct: 228 DSLTGLANRAFFEGRLNRIINDCKTNQHAAVLFLDGDHFKEINDNYGHAAGDVVLTSIAD 287 Query: 161 QLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +L + V RLGG+EFA A + ++ + +AN++ K + + I +S G I Sbjct: 288 RLRALLRESDLVARLGGDEFAILLAPIHDTD-DVLTIANNIIKSMTHP-IVLSDGQEITT 345 Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR---NRVVCFSD 260 ++S G+A H + ++ RAD+A+Y AKK R +V SD Sbjct: 346 SLSIGVAIYPDHAQTPDELLQRADEAMYQAKKGFRLYEQSIVYLSD 391 >gi|254465870|ref|ZP_05079281.1| sensory transduction histidine kinase [Rhodobacterales bacterium Y4I] gi|206686778|gb|EDZ47260.1| sensory transduction histidine kinase [Rhodobacterales bacterium Y4I] Length = 600 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F+SS +LS++ D+D+FK+ NDN GH GD V+ +S Sbjct: 409 DPLTGLFNRRHMTESLRKFLSSSALNCARLSVIAVDVDHFKKFNDNHGHDAGDMVLRAVS 468 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF G + ++A A LR+ +E + IT Sbjct: 469 TVLDKACDGSEAACRPGGEEFTVILPGVTPEDALTRAELLRQAVEEITVRYGEKTLPQIT 528 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 ISAG+A H ++ AD+ALY AK GRN+V Sbjct: 529 ISAGVAHYPSHGLLPQDLLRAADEALYAAKAKGRNQV 565 >gi|160899475|ref|YP_001565057.1| diguanylate cyclase [Delftia acidovorans SPH-1] gi|160365059|gb|ABX36672.1| diguanylate cyclase [Delftia acidovorans SPH-1] Length = 282 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 81/167 (48%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + + LS D L+GL N F I + E ++ DID+FKQIND GH V Sbjct: 69 DELCSLSLRDPLTGLANRRHFRTIAEREIDRVARSGEAALMLMLDIDHFKQINDQHGHIV 128 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++ L + R GGEEFA +A +R IE + I Sbjct: 129 GDRVLQSVARTLTNCVRPMDTLARYGGEEFAIVLPACPATFGLSVAERIRSAIERMPVVI 188 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRV 255 S ++ ITIS G A +T ++ RAD+ LY+AK +GRNRV Sbjct: 189 SPTLTLQITISIGGAYALQWIRSTTTLWTERADKQLYLAKSAGRNRV 235 >gi|89894478|ref|YP_517965.1| hypothetical protein DSY1732 [Desulfitobacterium hafniense Y51] gi|89333926|dbj|BAE83521.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 540 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 11/168 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151 SYNR R+ L+N + + G +EK ++ FDIDYFK NDN GH G Sbjct: 374 SYNRYFFDERLQQEIDLVNR---LQAYGLESEKSVNNFGLIMFDIDYFKNYNDNNGHLAG 430 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ + + V + R GGEEFA +SE+ I A +RK +E+ Sbjct: 431 DELLQTIVTVVKGVLYPTDILCRYGGEEFAVICCHTSEKGFEIAAEKIRKAVEDYDFRFQ 490 Query: 212 SG-PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 P ++T+S G A C ++ +I RAD LY+AK +GRN+VV Sbjct: 491 DKQPGGNLTVSIG-AAYCSTPNVNKKDLITRADNYLYLAKSTGRNKVV 537 >gi|325295303|ref|YP_004281817.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065751|gb|ADY73758.1| diguanylate cyclase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 361 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 8/184 (4%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDY 138 S +K+L + + ID L+ + N ++F ++ N +++ DID Sbjct: 176 SNQQIKKLRKELEESKKEANIDFLTRVANRASFDRAISDMVKDFYERNYPFALLMIDIDN 235 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FKQIND +GH GD V+ L+ + V R GGEEFA G + +A +A Sbjct: 236 FKQINDTYGHQAGDHVLRELARTIKEQLRARDVVARYGGEEFAILIPGVTFAQAVRIAER 295 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +RK IE I +T S G+A + + II +ADQALY+AK++G+N++ Sbjct: 296 IRKNIEKHLFRYKD-TVIPVTASIGVAVMRNGLDETGIIEKADQALYLAKRNGKNQIKTD 354 Query: 259 SDIE 262 D+E Sbjct: 355 LDVE 358 >gi|299532454|ref|ZP_07045845.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298719539|gb|EFI60505.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 400 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 118/253 (46%), Gaps = 30/253 (11%) Query: 28 MIYFSIFFSIFI----ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83 +++ SI F+ + A + + L + +P++ L + + N SL+ + ++ + Sbjct: 154 LLWLSILFTAYTFTRPALIWLLGYTDLRALPRSPYWILTLLSILNFSLLFTVVMAAIAVK 213 Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136 G + KE ID L+ +LN +F ++ + Y ++++ DI Sbjct: 214 ETVGKLRKE-----------RDIDALTQILNRRSFHEHAQKRLADMRRY--PMAVLACDI 260 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND +GH GD V+ ++ L V R GGEEF + ++A ++A Sbjct: 261 DHFKRINDTWGHERGDMVLQLVASTLQNNVREHDLVARFGGEEFVLLLADITLEDAELIA 320 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV- 255 +++ + + + +GP +T+S GI+ + AD+ LY AK +GR+RV Sbjct: 321 QRIQRDLGSRNTVLPTGPK--LTMSFGISLITRSFQFEQAMKEADRLLYQAKNAGRDRVH 378 Query: 256 ---VCFSDIENNT 265 V + DI T Sbjct: 379 VSGVSYPDISVET 391 >gi|238650401|ref|YP_002916253.1| response regulator PleD [Rickettsia peacockii str. Rustic] gi|238624499|gb|ACR47205.1| response regulator PleD [Rickettsia peacockii str. Rustic] Length = 450 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F I + KL ++ DID FK +ND +GH GDKV+ +S Sbjct: 291 DGLTGLFNRRYFDIHLKQIIEKTNKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVS 350 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218 L + R GGEEF +A A +R IE +I + Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRIKIEYMNFHIEDQIEPLKT 410 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TIS G+ + +E I + I RAD+A+Y AK +G+N+VV Sbjct: 411 TISIGVTKYKKEESIESFIERADKAMYEAKTTGKNKVV 448 >gi|86147986|ref|ZP_01066289.1| GGDEF domain protein [Vibrio sp. MED222] gi|85834210|gb|EAQ52365.1| GGDEF domain protein [Vibrio sp. MED222] Length = 426 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 74/156 (47%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+G N + + + L + + I FD+D+FKQIND GH VGDKV+ Sbjct: 272 DPLTGCRNRTEALDAFYDFEWLAQQGKTIHIALFDLDHFKQINDQHGHEVGDKVLIQFVA 331 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 G + R GGEEF L + + N+L I S ++ +T Sbjct: 332 TANESLGEQYLLYRWGGEEFLLVCLEQTSLQCNEAINNLYLAIGQS----VWPKALKVTT 387 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+ + E I + I RAD+ALY AK +GRN+V Sbjct: 388 STGVTQLKQHESIRSAIKRADKALYQAKDNGRNQVA 423 >gi|119775552|ref|YP_928292.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119768052|gb|ABM00623.1| diguanylate cyclase [Shewanella amazonensis SB2B] Length = 518 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A S + L + DID+FK INDNFGH GDK Sbjct: 354 QKLNLLDTLTQLPNRAALEERMEQEFRSFQRHKHPLWVAVADIDHFKSINDNFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF S+ + L N +R+ ++N + Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLIPEVSDTDIVQLLNRVREKVKNIPFKFKNQ 473 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A E I RAD ALY AK R+RV+ Sbjct: 474 -RITVTVSIGAARVMDNELIHETFERADAALYKAKHESRDRVI 515 >gi|300871834|ref|YP_003786707.1| GGDEF domain-containing protein [Brachyspira pilosicoli 95/1000] gi|300689535|gb|ADK32206.1| GGDEF domain protein [Brachyspira pilosicoli 95/1000] Length = 346 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 110/228 (48%), Gaps = 22/228 (9%) Query: 51 FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNR-----ISQLSR 105 F IG+ Y L I+ L L I +I +S+ + SI K+ FI + +++ S Sbjct: 117 FPIGIVDIYTLYDII---LKLKIRNIRLSVDNIELESSIEKDRFIKELKKEIDILNEQSI 173 Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI--- 155 ID ++ L N F + E+ +S++F D+D+FK +ND +GH G+ V+ Sbjct: 174 IDHITNLYNIRYFYKVIEEEAERAKRYKYTISLIFMDLDHFKNVNDIYGHDCGNLVLHEI 233 Query: 156 -AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 L+ + R GGEEF +++ EA + +R+ +EN N S Sbjct: 234 GRLLTSSSDNILRRSDISFRYGGEEFIIICPNTNKDEAFTVGERIRRTVENKVFNYES-Q 292 Query: 215 SIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I ITIS GI+E H K I + +D A+Y AK GRN+V+ + + Sbjct: 293 DIKITISIGISEYRHNSKTSIFQSVKESDMAMYEAKHQGRNKVIIYDE 340 >gi|296106460|ref|YP_003618160.1| hypothetical protein lpa_01327 [Legionella pneumophila 2300/99 Alcoy] gi|295648361|gb|ADG24208.1| hypothetical protein lpa_01327 [Legionella pneumophila 2300/99 Alcoy] Length = 377 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/183 (36%), Positives = 92/183 (50%), Gaps = 19/183 (10%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK------LSIVFFDIDYFKQIN 143 KEL I N + +S D LSGL N F + +N LS+V DID FK IN Sbjct: 194 KELLI--NELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLVSIDIDNFKLIN 251 Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 DN GHP GDKV+ ++D L +F + + RLGG+EFA +E + ++ Sbjct: 252 DNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISICKAIKNP 311 Query: 203 IENSQINISSGPS-----IHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNR 254 + +N + + H+T+S GIA H E I I AD+ALY AKK G+N+ Sbjct: 312 FKTENLNHTYDSNEQLLMSHVTLSIGIA-YIHFESSVSIEHAITAADKALYQAKKKGKNQ 370 Query: 255 VVC 257 +V Sbjct: 371 IVV 373 >gi|254457269|ref|ZP_05070697.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales bacterium GD 1] gi|207086061|gb|EDZ63345.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales bacterium GD 1] Length = 428 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N + F ++S+ + K I+ DID+FK IND +GH VGD+ + ++ Sbjct: 273 DPLTQIYNRTYFDELMTSIALHQRKADTNFIILITDIDHFKSINDTYGHQVGDEALKDVA 332 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + V R GGEEF + EA ++A LR IE ++I I IT Sbjct: 333 RVIKDSLRENDVVARWGGEEFVIMLKNTELDEAQMIAEKLRANIEKTKIQ----NVIDIT 388 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S G+ + E + RAD ALY AK+SGRN VV Sbjct: 389 TSIGLTKYYVGEDTNLTFKRADNALYKAKESGRNMVVT 426 >gi|146280403|ref|YP_001170556.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501] gi|145568608|gb|ABP77714.1| GGDEF domain protein [Pseudomonas stutzeri A1501] Length = 456 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 68/134 (50%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N ++ D+D+FK+IND GH GD+++ + L + RLGGEEF + Sbjct: 322 NNTFGVLAIDVDHFKRINDTHGHDAGDQILQQVGALLASNTRGGDYAFRLGGEEFLLVLV 381 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 +A A LR+ I +SSG + +T+S G+A ++ +ADQALY Sbjct: 382 DIDTNKALAAAEKLRERIAREHFRLSSGEVLQVTVSIGMAVHDGHPDYERLLQQADQALY 441 Query: 246 VAKKSGRNRVVCFS 259 AK GRNR V ++ Sbjct: 442 QAKHGGRNRCVLYA 455 >gi|194365004|ref|YP_002027614.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia R551-3] gi|194347808|gb|ACF50931.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Stenotrophomonas maltophilia R551-3] Length = 807 Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 8/135 (5%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S+ + ++D+FK +ND+FGH GD+++ +D LV +VGRLG +EFA + + Sbjct: 400 SLCYINLDHFKLVNDSFGHAAGDQMLRSFADYLVAAVRDGDWVGRLGADEFAVFLAHAGQ 459 Query: 190 QEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALY 245 EA + L+++I N + IS G S ++ S G+ E + P + ++ AD A Y Sbjct: 460 DEAKRV---LQRVIRNLGQATFPISEG-SPQLSCSIGVVEVNAEAPDANWLMSAADSACY 515 Query: 246 VAKKSGRNRVVCFSD 260 AK++GRNRV CF++ Sbjct: 516 AAKQAGRNRVHCFNE 530 >gi|86357221|ref|YP_469113.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] gi|86281323|gb|ABC90386.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] Length = 708 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 22/163 (13%) Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D LSGLLN ++ L GS + D+D FK +ND +GH VGD +I +S+ L Sbjct: 297 DSLSGLLNRHGLLAMLEELEGSEGAPPRLYLVDLDGFKAVNDAWGHAVGDDLIRIVSNAL 356 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------SI 216 + + V RLGG+EFA +G + R+ IE + + + +GP +I Sbjct: 357 IACHREVVAVARLGGDEFALVQVGIA----------ARQEIEETILALFAGPFKIDGRTI 406 Query: 217 HITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + S G A R EP+ ++ RAD ALY AK++G+ R + + Sbjct: 407 EVGASIGAAARDADIEPLE-LLRRADMALYRAKENGKGRAIEY 448 >gi|238790066|ref|ZP_04633844.1| Predicted diguanylate cyclase [Yersinia frederiksenii ATCC 33641] gi|238721879|gb|EEQ13541.1| Predicted diguanylate cyclase [Yersinia frederiksenii ATCC 33641] Length = 366 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 7/176 (3%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141 + ++ L+ + S LS ID L+GL N + L + + ++ DID+FK Sbjct: 178 TRKLVARLYNEREKFSDLSMIDPLTGLYNRRGLENKLETLLAQSPGNHYVLLLDIDHFKA 237 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 NDN+GH +GD+ + ++ + + V R GGEEF SE+ A+ LA +R+ Sbjct: 238 YNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQLAERVRQ 297 Query: 202 IIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I + S +T+SAGI+ + +S+ + AD+ALY AKK+GRN+V Sbjct: 298 RVLGLDIPHVFNHKVSTTVTLSAGISPLQSYDLVSS-LKAADEALYRAKKNGRNKV 352 >gi|325568971|ref|ZP_08145264.1| YaiC/YhcK/ArdA family protein [Enterococcus casseliflavus ATCC 12755] gi|325158009|gb|EGC70165.1| YaiC/YhcK/ArdA family protein [Enterococcus casseliflavus ATCC 12755] Length = 369 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 12/170 (7%) Query: 97 YNRISQL--SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 Y +++L S+ID L+G N+ + L S + ++I D+D+FK++ND +GH G Sbjct: 195 YQVLAELANSKIDALTGCFNYGTYNHDLLQAVSQKKTVTIAMIDLDHFKKVNDRYGHIAG 254 Query: 152 DKVIAFLSDQ----LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 ++++ + + L F R GGEEF G ++ L + I +S Sbjct: 255 NELLRTFASRTTTFLEAHFAETYSFYRYGGEEFCLVIEGDVKERTVAAMTTLCQTISSSM 314 Query: 208 INISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ +++S G+ + CH + ++ + RADQALY+AK+SGRNRV Sbjct: 315 FPVANFEKGTMSLSCGVEASTVCHGDILAAV-ERADQALYLAKQSGRNRV 363 >gi|149188405|ref|ZP_01866698.1| putative GGDEF family protein [Vibrio shilonii AK1] gi|148837623|gb|EDL54567.1| putative GGDEF family protein [Vibrio shilonii AK1] Length = 244 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 4/164 (2%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVI 155 ++ + S D L+ + N F S+L + + + ++ DIDYFK++ND +GH GD + Sbjct: 82 KLRKQSESDPLTQIANRRYFFSTLATITKSTTPHCLLLMDIDYFKKVNDTYGHLAGDNTL 141 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + ++ + R+GGEEFA E A +A +R I ++ + + Sbjct: 142 KEVVARIQDIIRPDDTFARVGGEEFALLLPDIEEHTAYEIAERIRCTIADTPFHYEQQ-T 200 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 IT+S GI + ++E + I RAD ALY+AK GRN+ + S Sbjct: 201 FSITLSVGITQARYQERNNHIFSRADDALYIAKSRGRNQSMVLS 244 >gi|330720750|gb|EGG98973.1| hypothetical protein imdm_1668 [gamma proteobacterium IMCC2047] Length = 434 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 16/173 (9%) Query: 96 SYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S+ + + D L+GL N S + N L DID+FK+INDN GH Sbjct: 251 SFEHLKNAANKDFLTGLHNRKYLFDAGSKLFENACRENISLMAAMIDIDHFKEINDNHGH 310 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKII 203 +GD+ + ++ +L + + R+GGEEF A + +SE++ +LAN L ++ Sbjct: 311 QIGDRALQHIASKLKQLLRGTDIIARVGGEEFCLLCVNAGSGATSERD--LLAN-LCDVV 367 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + S ++++ SI +TIS G + + ++ AD ALY AK+SGRN+VV Sbjct: 368 QYSPLDVNDFLSITLTISIGYTTEI-PDTLEEMVNNADAALYRAKQSGRNKVV 419 >gi|329912972|ref|ZP_08275854.1| putative GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327545470|gb|EGF30674.1| putative GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 781 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 10/175 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFF-DIDYFK 140 +++++L R QL+ +D L+G+ N F + KL+ VFF D+D FK Sbjct: 334 TLIQQLETEKTRAFQLASLDFLTGIPNRMKFYELAEIELVRARRSRKLTAVFFLDLDKFK 393 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL 199 IND GH VGD ++ ++ +L RLGG+EFA G S+ A +AN L Sbjct: 394 AINDTHGHGVGDLLLQQVASRLRHSLRGYDLAARLGGDEFAVLVSGLDSDDAVATVANKL 453 Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 + + +++ G + +T S GIA E I T++ RAD+A+Y+AK+SGR Sbjct: 454 VASLSATYLDL-DGHDLDVTPSIGIALYPGDGEEIDTLLSRADRAMYLAKQSGRG 507 >gi|116873347|ref|YP_850128.1| GGDEF domain-containing protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742225|emb|CAK21349.1| GGDEF domain protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 375 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 15/188 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131 +LL+ Y I K + N +++ + D L+ L N F G + LS+ Sbjct: 184 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFNKAQKRKKALSL 242 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190 DID+FK+IND GH G+ V+A S L F R+GGEEFA + Sbjct: 243 FIIDIDHFKEINDFHGHQAGNTVLAQFSTILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 302 Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247 +AA++A+ LR+ IE ++ N +SG ++T+S G+A + ++ ADQALY A Sbjct: 303 QAALIADFLREEIERAKFPYNPASG---NVTVSIGVAATNGNFATTESLFEAADQALYQA 359 Query: 248 KKSGRNRV 255 K++GRN++ Sbjct: 360 KQNGRNQI 367 >gi|294339813|emb|CAZ88176.1| putative GGDEF family protein, diguanylate cyclase domain [Thiomonas sp. 3As] Length = 546 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 8/166 (4%) Query: 98 NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++SQ + D L+G LN + S + + L++ D+D+FK +ND GH Sbjct: 354 EQVSQQLQEDPLTGALNRRGLDAEFTRMQSRVVRQGQPLTLALLDLDHFKAVNDTHGHDT 413 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQIN 209 GD V+ L Q + V R+GGEEF + Q++ ++ L + + + Sbjct: 414 GDAVLKALVAQAKRLIRPSDRVARMGGEEFMLLLPDTPVQQSLVVVQRLLVAFSDQTLVQ 473 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S+G I ++ SAG+AE C E + I R D AL AK++GR RV Sbjct: 474 DSTGRRIPLSFSAGVAELCPDEDFAAIYQRVDAALLQAKQAGRKRV 519 >gi|256827837|ref|YP_003156565.1| response regulator receiver modulated diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gi|256577013|gb|ACU88149.1| response regulator receiver modulated diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] Length = 341 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 17/179 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL ++ LS +D L+G+ N F S + LS++ D+D+FK ND Sbjct: 152 ELEEKNRQLQLLSSLDGLTGIPNRRQFDEMLSLEWSRMAREKTPLSLIILDVDHFKLFND 211 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD + ++ L + P V R GGEEFAA G+S + A ++A +R+ + Sbjct: 212 RYGHLAGDSCLRRVALALATMLRRPADMVARYGGEEFAAILPGTSLEGAQVVAESMRQTV 271 Query: 204 ENSQINISSGPSIHI-TISAGIAERCHKEPI-----STIIYRADQALYVAKKSGRNRVV 256 I P + T+S G++ PI + +I ADQ LY AK+ GR+R V Sbjct: 272 TELAIEHLDSPVRGVLTVSLGVSSVI---PIPGCIPADLIQAADQGLYQAKQEGRDRWV 327 >gi|251790234|ref|YP_003004955.1| diguanylate cyclase [Dickeya zeae Ech1591] gi|247538855|gb|ACT07476.1| diguanylate cyclase [Dickeya zeae Ech1591] Length = 470 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 9/159 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 LSR L H S+ S ++ ++I+ DID+FK IND+FGH GD+++ ++ + Sbjct: 315 LSRYGFTEALTTHG---QSVKSQHDAVNIMLIDIDHFKNINDSFGHDCGDEILRQVAKVI 371 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 V R+GGEEFA + LA+ LR+ I+ + + P + +T+S Sbjct: 372 QQAVSAQGLVSRIGGEEFAVVCFNYNPSAFYRLADSLRQTIQQTVFLFNQQP-VPVTVSI 430 Query: 223 GIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVV 256 GIA + + + AD+ LY AK+ GRNR + Sbjct: 431 GIAHAPTSGKYLVDTVHELFPLADKNLYTAKREGRNRTI 469 >gi|254458741|ref|ZP_05072165.1| response regulator PleD [Campylobacterales bacterium GD 1] gi|207084507|gb|EDZ61795.1| response regulator PleD [Campylobacterales bacterium GD 1] Length = 417 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 9/171 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL +++I ++ D L+G N F S S K L++ DID FK IND Sbjct: 245 ELLDLFDKIRDMANKDFLTGAYNRRYFFDSGNSTYSKNKRNDTPLAVAMIDIDKFKNIND 304 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH +GD I + L T + R GGEEF S + +L +RK E Sbjct: 305 TYGHDIGDIAIKEVKKILDENLRTSDLMARFGGEEFCILLEDISLENIKVLFEKIRKKFE 364 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ I+I++ +I TIS GI + + +I +D+ALY AK+SGRNRV Sbjct: 365 DNVIDINA-TAISYTISTGIY-FGFSDSLEDMIRLSDEALYTAKESGRNRV 413 >gi|157375627|ref|YP_001474227.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157318001|gb|ABV37099.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 341 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G+LN AF L + ++ DID+FK NDN+GH +GD+V+ ++ +L Sbjct: 182 DALTGILNRRAFDDDFKGILNQSPDGTCLILVDIDHFKAFNDNYGHQLGDQVLKAVAKRL 241 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITI 220 + + R GGEEFA + + A LA +R+ +E + + +IT Sbjct: 242 SEACRDGVKIYRYGGEEFAVLLPNNQLRTARHLAEAMRRSLEKVSLKDRRKDTRINNITA 301 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S G+A+ + +I +AD+ LY AK+ GRNRV+ S Sbjct: 302 SFGVAQWQPSMTHAQLIEQADKLLYEAKRLGRNRVMPIS 340 >gi|153829219|ref|ZP_01981886.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39] gi|148875332|gb|EDL73467.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39] Length = 642 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ + DID+FK+IND +GH Sbjct: 473 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKYGH 532 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 533 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 585 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 586 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTAME 637 >gi|302672209|ref|YP_003832169.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396682|gb|ADL35587.1| GGDEF domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 373 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGS 187 L + DID+FK+IND +GH GD+ + L+ F + GR GGEEF A Sbjct: 245 LMVAIADIDFFKKINDTYGHVTGDEALKELTKVFSRYFDEGLLYGRWGGEEFLLIAPENV 304 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 + E + D+RK +E+++ +S I TIS G AE ++ AD LY+A Sbjct: 305 TYAEFGSMLEDIRKQVEDNEF-MSGNEMIRFTISIGAAEYKKGMTSEQLMNTADDKLYIA 363 Query: 248 KKSGRNRVV 256 K++GRN+VV Sbjct: 364 KETGRNKVV 372 >gi|222149336|ref|YP_002550293.1| GGDEF family protein [Agrobacterium vitis S4] gi|221736320|gb|ACM37283.1| GGDEF family protein [Agrobacterium vitis S4] Length = 800 Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F + L E L+ +F D+D FK INDN GH GD + L Sbjct: 354 DHLTGLLNRQGFENELDVQIEATDRQGGSLACLFVDLDRFKWINDNLGHHAGDTTLKILV 413 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPSIHI 218 D +V + R+GG+EFA + E A +AND+ I E I G + + Sbjct: 414 DMIVHLLPENSVAARIGGDEFAILLRANDCETAARAVANDICGIFETP--FIVKGTATRL 471 Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + S GIA H E + ++ +AD A+Y K+ G+N F D NT Sbjct: 472 SASIGIALYPQHAETATELLQKADMAMYNRKRDGKNGFQIFDDSIGNT 519 >gi|218514309|ref|ZP_03511149.1| putative sensory box GGDEF family protein [Rhizobium etli 8C-3] Length = 178 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 3/144 (2%) Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 SA ++ + +S+V FD+D+FK+IND GH GD V+ ++ F + + R Sbjct: 9 SALLTQAEHGSRWISVVLFDLDHFKKINDLNGHDAGDAVLRHVAGVARENFRSFDLLVRH 68 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK---EP 232 GGEEF A S+ AA++A +R IE ++I + SG + +T S G A R + Sbjct: 69 GGEEFLALLPDSTPDGAAVVAERVRLAIEMAEIALPSGERLKVTASFGCAGRANDGASRN 128 Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256 ++ RAD ALY AK SGRN VV Sbjct: 129 FEDLVKRADLALYAAKASGRNCVV 152 >gi|169829590|ref|YP_001699748.1| hypothetical protein Bsph_4157 [Lysinibacillus sphaericus C3-41] gi|168994078|gb|ACA41618.1| Hypothetical yneF protein [Lysinibacillus sphaericus C3-41] Length = 583 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 23/183 (12%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGL-----LNHSAFISSLGSYNEKLSIVFFDIDYF 139 I+ SIL+ ++ ++ +D L+ L L+H F+ Y++ + DID F Sbjct: 411 IANSILR------TQLQEMVDLDHLTKLYARSYLDH--FVEKSLEYDQSGMFLLIDIDNF 462 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND +GH VGDK++ ++ QL G+ R GGEE + SE+EA LA+ + Sbjct: 463 KRINDTYGHQVGDKILMQIAVQLKETIGSRGICARWGGEEMSIYVPNISEKEALELASAI 522 Query: 200 RKIIENSQINISSGPSIHITISAG-IAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257 ++ I S +TISAG I P ++ AD ALY AK SG+NR C Sbjct: 523 VEV-------IPSATDPQVTISAGLITWNDQDRPAFQSVFLHADTALYEAKNSGKNR-FC 574 Query: 258 FSD 260 D Sbjct: 575 IHD 577 >gi|126669000|ref|ZP_01739938.1| diguanylate cyclase (GGDEF domain) [Marinobacter sp. ELB17] gi|126626549|gb|EAZ97208.1| diguanylate cyclase (GGDEF domain) [Marinobacter sp. ELB17] Length = 417 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/129 (40%), Positives = 66/129 (51%), Gaps = 6/129 (4%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 + SI+ DID FK +ND+FGH VGD+V+ + LV VGR GGEEF + Sbjct: 280 EFSIILLDIDNFKLVNDHFGHLVGDEVLKSFASLLVSSIRKSDIVGRWGGEEFLIICPDT 339 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEPISTIIYRADQALYV 246 Q LA +RK I + P + S G+A E T+I R D+ALY Sbjct: 340 DLQGCENLAEQIRKRIAEHEF-----PEKRVLNASLGVAVHQQDENADTMIARVDKALYR 394 Query: 247 AKKSGRNRV 255 AKK GRNRV Sbjct: 395 AKKHGRNRV 403 >gi|71278698|ref|YP_266849.1| response regulator/GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71144438|gb|AAZ24911.1| response regulator/GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 419 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 18/171 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLS--IVFFDIDYFKQINDNFGHPVG 151 +I + D L+ L N AF S S N+K+ + D+D+FK++ND +GH G Sbjct: 250 KIQHAANTDYLTDLANRRAFFRSAESRIKEYINKKVPYCLAMIDVDFFKKVNDTYGHDSG 309 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++ + FG + RLGGEEFA G +D R+ +I +S Sbjct: 310 DQVLKVIALYMRKHFGAGL-TARLGGEEFAVLLHGLDADYLHNKLDDFRR-----EIAVS 363 Query: 212 SGP----SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S P SI IT+S G+ E +S + AD ALY AK++GRN++V F Sbjct: 364 SIPAGDTSISITLSLGVVFDSEDE-LSKQMNEADNALYAAKENGRNQIVVF 413 >gi|117919661|ref|YP_868853.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117611993|gb|ABK47447.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 578 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 86/170 (50%), Gaps = 15/170 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++ D L+G N S + +N LSIV FDID FKQ ND +GH +G Sbjct: 400 QVKAMAETDGLTGCYNRRYLDSQIQKELIYANDHNMPLSIVMFDIDNFKQFNDRYGHVLG 459 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D+ + + + + P + R GGEEF S ++A +A LRK I ++I Sbjct: 460 DQCLKQIVNAAKSILQRPTDILARYGGEEFMLLLPSSHLEDAYKIAERLRKAI--IALHI 517 Query: 211 SSGPSIH---ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 S H +TIS G+A + I T ++ +AD+ALY AK+ GRNR Sbjct: 518 PHEDSSHSGLVTISLGVACWQPSQLIDTNRLLCQADEALYQAKQQGRNRT 567 >gi|320159581|ref|YP_004172805.1| hypothetical protein ANT_01710 [Anaerolinea thermophila UNI-1] gi|319993434|dbj|BAJ62205.1| hypothetical protein ANT_01710 [Anaerolinea thermophila UNI-1] Length = 680 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 11/172 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHP 149 +R++ +R D L+G N F L +++ +++F D+D FK +ND + H Sbjct: 357 DRLNHQARHDALTGFPNRLYFFERLQQAVQRVQHTPDLRPALIFIDLDGFKMVNDTYDHA 416 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQI 208 +GD+V+ +++L F+ RLGG+EFA + S EA +A L +I Q Sbjct: 417 MGDRVLRIFAERLKRSLRGSDFIARLGGDEFAILLEDTVSLDEAVRVAERLIQI--TRQP 474 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + +++SAGIA+ + I+ AD A+Y AK G++RV+ F + Sbjct: 475 FDLDGRQVFLSMSAGIAQVLPNQRGEEILRNADMAMYAAKGKGKSRVMVFDE 526 >gi|301382183|ref|ZP_07230601.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13] gi|302061899|ref|ZP_07253440.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40] Length = 528 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 11/170 (6%) Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND+FGH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A ++ + I + QI + P + Sbjct: 396 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAENILQAIRDEQITHPASPFGIV 455 Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A IS +I AD+ALY AK GRNRV S+I NT Sbjct: 456 TVSLGVATVVGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIAFNT 505 >gi|269966199|ref|ZP_06180288.1| putative GGDEF family protein [Vibrio alginolyticus 40B] gi|269829114|gb|EEZ83359.1| putative GGDEF family protein [Vibrio alginolyticus 40B] Length = 252 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 8/157 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S+ID L+ + N F L N +++ FD+D+FK IND GH GD V+ Sbjct: 87 SQIDALTNIYNRRVFFEKLTEEVIKAQEPNYHSALLLFDLDFFKVINDKRGHDAGDYVLE 146 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+D + + R+GGEEFA +S A + ++R I+N Q I Sbjct: 147 TLADLVSHLLVKDEIFARVGGEEFAIILPETSLSAAKEVGEEVRSHIQNCQFEFEK-IEI 205 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +T+S G+ E E + AD+ALY AK++GRN Sbjct: 206 PVTVSVGVVEIGRNETTKRLYAHADKALYAAKRNGRN 242 >gi|262044623|ref|ZP_06017678.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038024|gb|EEW39240.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 443 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 27/162 (16%) Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+ L N S F +L K LS++ D+D+FK+IND++GH GDKVI F + Sbjct: 294 DPLTRLYNRSFFYDTLNQQLAKVNAQHPLSVLISDLDHFKRINDSYGHVAGDKVIQFAAS 353 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L R+GGEEFA + + E+EA +A +R + + ++ +TI Sbjct: 354 VLESHSRVDDAAARIGGEEFALLLVNTGEKEAQAIAERIRLAVSAGESHLPE----RMTI 409 Query: 221 SAGI---------AERCHKEPISTIIYRADQALYVAKKSGRN 253 S G+ AE C + RAD+A+Y AK +GRN Sbjct: 410 SMGVYTTYDNSVTAEAC--------VQRADEAMYEAKNNGRN 443 >gi|160895993|ref|YP_001561575.1| diguanylate cyclase [Delftia acidovorans SPH-1] gi|160361577|gb|ABX33190.1| diguanylate cyclase [Delftia acidovorans SPH-1] Length = 414 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 77/173 (44%), Gaps = 15/173 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 +L + +I L R D L+G+ N I L L + DID+FK+IND Sbjct: 228 KLATALAQIEALLRHDDLTGVSNRRGVIERLHEVRTAAHDRGTVLCVALLDIDHFKRIND 287 Query: 145 NFGHPVGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +FGH GD+V+ L QL G VGR GGEEF + +A L LR Sbjct: 288 SFGHEGGDRVLRAFGTLLKSQLRSADG----VGRYGGEEFLLVLPDTDLAQAGELLERLR 343 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I + + G +T + G A+ E + I RAD ALY K GRN Sbjct: 344 LRIAEAPWTQTLGEGARVTCTLGAAQYRAGESVEATIARADAALYRGKAQGRN 396 >gi|189426487|ref|YP_001953664.1| diguanylate cyclase [Geobacter lovleyi SZ] gi|189422746|gb|ACD97144.1| diguanylate cyclase [Geobacter lovleyi SZ] Length = 557 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 17/167 (10%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N I+S K++++F D+D+FK +ND GH VGD+++ +S Sbjct: 386 DALTGLPNRRLLEDRLNQSIASADRNAGKVAVLFLDLDHFKAVNDTLGHEVGDQLLKQVS 445 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS-SGPSIH 217 +L V RLGG+EF L +S Q+ +A+ K+I+ S +G Sbjct: 446 GRLQEAVRKSDTVARLGGDEFILLLLNITSHQDVDSVAD---KVIQAISRPFSIAGQQAQ 502 Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + S GIA E C +P S + + AD+ALY AK+SGRNR V F+ I Sbjct: 503 VGTSIGIALYPEDC-TDPESLVAF-ADKALYKAKQSGRNRYVWFAAI 547 >gi|149920376|ref|ZP_01908846.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1] gi|149818818|gb|EDM78260.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1] Length = 297 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 11/181 (6%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136 ++SG ++ + + I +LS +D L+ + N F+ +L Y+ L+++ FDI Sbjct: 117 FLSGDNIESSY--HEEIFRLSTVDGLTQVFNRRYFMETLERELSRARRYDRPLALLIFDI 174 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+ ND +GH GD V+ +++ + + V R GGEEF + A+ A Sbjct: 175 DHFKRCNDTYGHRAGDFVLRRIAELVTMRARKVDVVSRYGGEEFTVILPEIDIRGASAFA 234 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 +RK+I + I G I +TIS G+AE +I AD+ LY AK GRNRV Sbjct: 235 EKIRKLIADETF-IFEGRKIPVTISIGVAEIGPSVANADDMIQTADRRLYAAKTGGRNRV 293 Query: 256 V 256 V Sbjct: 294 V 294 >gi|331014505|gb|EGH94561.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 528 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 11/170 (6%) Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND+FGH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A ++ + I + QI + P + Sbjct: 396 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAENILQAIRDEQITHPASPFGIV 455 Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A IS +I AD+ALY AK GRNRV S+I NT Sbjct: 456 TVSLGVATVVGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIAFNT 505 >gi|322433080|ref|YP_004210329.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9] gi|321165307|gb|ADW71011.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9] Length = 642 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 10/161 (6%) Query: 107 DCLSGLLNHS----AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GL N + AF + + E ++ D+D FKQ+ND GH VGD V+ +S ++ Sbjct: 215 DSLTGLANRALLQKAFEENNATSPEDRVLMVMDLDRFKQVNDTLGHRVGDHVLVEVSRRM 274 Query: 163 VVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPS-IHITI 220 + G + R GG+EFAA SS Q +LA+ +I+ + I SG I I + Sbjct: 275 KDILGEETLLVRTGGDEFAALIDNPSSLQTVELLAS---RIVSILTLPILSGEHIIQIGV 331 Query: 221 SAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S GI R +S +++ AD ALY AK +GRNR + F + Sbjct: 332 SIGICPRDQVNASLSDLLHCADLALYKAKNTGRNRYLVFEE 372 >gi|262165480|ref|ZP_06033217.1| GGDEF family protein [Vibrio mimicus VM223] gi|262025196|gb|EEY43864.1| GGDEF family protein [Vibrio mimicus VM223] Length = 406 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 17/181 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143 K+L+ + ++ LS D L+GL N + L + V D+D FK++N Sbjct: 228 KQLYQANRQLEALSLTDSLTGLPNRRKAMHQLALHWNLAREQKKPFVCVMIDVDGFKEVN 287 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D++GH +GDKV+ ++ L F V RLGG+EF A + +A + + Sbjct: 288 DSYGHDIGDKVLTIIAHALKDHFRNDDLVCRLGGDEFLAICPNTDAVSGVHIAEHVCDEV 347 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 E +I + G ++S G+AE + H E ++ ADQA+Y+AK +G+NRV F Sbjct: 348 ELLEIPV-EGIHWQGSVSMGVAEFDPNMKEHHE----LLRAADQAVYLAKNNGKNRVCAF 402 Query: 259 S 259 + Sbjct: 403 N 403 >gi|258627546|ref|ZP_05722323.1| GGDEF family protein [Vibrio mimicus VM603] gi|258580128|gb|EEW05100.1| GGDEF family protein [Vibrio mimicus VM603] Length = 385 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 15/226 (6%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF--- 94 +A V+ I + L Y+ L + L + V S ++I +L I G++L Sbjct: 161 LLAAVLAIMMVML-YVPLVAYQTLPLMAVFRASTIVIQ---NLFFFIILGTMLMLFLFEE 216 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 I ++R+ + D L+G N F L N + DID+FKQIND++GH + Sbjct: 217 IEWHRLRSIR--DELTGSFNRRYFKEQVQRQLNQSNTPYVVALVDIDHFKQINDSYGHDM 274 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI F+ +L + T V R GGEEFA A + + + ND+ I SQ Sbjct: 275 GDAVITFVVRKLESLNLTDCLVARYGGEEFAVFAREADAERVKEVLNDVCDAI--SQGFC 332 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+ +++S G + +AD A+Y AK+ GRNRV+ Sbjct: 333 IENQSLKVSVSIGAVLFDTPFDYGEALRKADSAMYQAKEQGRNRVM 378 >gi|222102417|ref|YP_002539456.1| GGDEF family protein [Agrobacterium vitis S4] gi|221739018|gb|ACM39751.1| GGDEF family protein [Agrobacterium vitis S4] Length = 568 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 6/163 (3%) Query: 100 ISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +++ + D L+GL N IS + + + ++ D+D+FK+IND F H +GD+V+ Sbjct: 392 LTEAANTDPLTGLSNRRHLETIISDINTQSASYALAILDVDHFKKINDTFSHIIGDRVLV 451 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPS 215 + + VV R GGEEF + A ++ LR I N I+ G Sbjct: 452 QIGTLVKVVVRETDIAVRFGGEEFVILMTDLTLAHAERVSERLRMTITNFDWSEIADG-- 509 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +++++S G+A ++ AD+ LY AK++GRNRVVCF Sbjct: 510 LNVSVSIGVAMSDDAVDAEAVLQLADRRLYWAKQTGRNRVVCF 552 >gi|254517294|ref|ZP_05129351.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s) [gamma proteobacterium NOR5-3] gi|219674132|gb|EED30501.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s) [gamma proteobacterium NOR5-3] Length = 1521 Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 7/136 (5%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGS 187 ++V DID+FK++ND GH VGD+++ ++ +L + V R+GG+EF ALG Sbjct: 1126 ALVMLDIDHFKRVNDTDGHGVGDELLVEVAARLRQRLRSFDTVARVGGDEFLMILNALGQ 1185 Query: 188 SEQEAAILA----NDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQ 242 + EA++ A N++R I + Q + S H+T S G+A KE T++ +AD Sbjct: 1186 DQMEASLTASRICNEIRADISSEQNLTGASTSHHVTGSFGVALFVGDKETAETLLKQADM 1245 Query: 243 ALYVAKKSGRNRVVCF 258 ALY AK +GRNRV F Sbjct: 1246 ALYSAKDNGRNRVKLF 1261 >gi|241113203|ref|YP_002973038.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861411|gb|ACS59077.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 665 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 12/170 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+G+ N A L ++ ++ S+ D+D+FK+ ND +GH GD+ Sbjct: 242 ELSHTDYLTGIGNRRALDRRLDECWAAWKDERRDFSVFLIDVDFFKRFNDRYGHQEGDRC 301 Query: 155 IAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + +++ L V G+ +GR GGEEF + + A LA +R +E+ I Sbjct: 302 LTVIANALKAVVGSSDGMIGRYGGEEFIVVMPAALPKVAMTLAEKIRMEVESLAIAHDER 361 Query: 214 PS--IHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259 P +T+S G+A K E + I+ AD ALY AK SGRN + F Sbjct: 362 PDDMSTVTVSIGVAFTREKVGEKVERIVREADLALYNAKASGRNCIRSFD 411 >gi|158422622|ref|YP_001523914.1| hypothetical protein AZC_0998 [Azorhizobium caulinodans ORS 571] gi|158329511|dbj|BAF86996.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 372 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 9/194 (4%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122 LV N LV + I +SL L ++ ++ + ++ D L+G +N L Sbjct: 171 LVINAYLVHLVILVSLSLFVMTSLAFEQARAKAKALETMASTDSLTGTMNRRGLEQILRH 230 Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 G + ++ ++ DID FK IND +GH GD V+ ++ +L V VGR GG+EF Sbjct: 231 VAGGSSGEIGLILIDIDNFKPINDTYGHLAGDAVLQAVAKRLAGVVRDSDVVGRWGGDEF 290 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 + + +A+ R+ + ++ +G + +T+SAG+ + P + + R Sbjct: 291 LIITRDAQLTDVIAMADRARQHVGT---HVLAG--MRVTLSAGVGVWDGQGPWADALQRI 345 Query: 241 DQALYVAKKSGRNR 254 D+ALY AK GRNR Sbjct: 346 DRALYSAKAEGRNR 359 >gi|58581954|ref|YP_200970.1| hypothetical protein XOO2331 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623865|ref|YP_451237.1| hypothetical protein XOO_2208 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576445|ref|YP_001913374.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426548|gb|AAW75585.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367805|dbj|BAE68963.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520897|gb|ACD58842.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] Length = 324 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 14/189 (7%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 I+ ++L +GY +++ + + +L+ +D L+GL N I+ Sbjct: 137 TIVGTLVTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTDQINQRQP 193 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 ++ S++ D+D+FK++ND +GH GD ++ L+ L P V R GGEEF Sbjct: 194 HDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVRDPHQVFRFGGEEFVVLL 253 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 S E LRK+I N GP IT+S G A + RAD AL Sbjct: 254 RAGSLAELEAATERLRKVIRNGL----RGPGGRITVSLGAARHDGETHWQDWFSRADAAL 309 Query: 245 YVAKKSGRN 253 Y+AK GR+ Sbjct: 310 YLAKNGGRD 318 >gi|23010494|ref|ZP_00051163.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 210 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 17/170 (10%) Query: 107 DCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV-- 154 D L+GL N +F +L G + S++ DIDYFK+ ND +GH GD+V Sbjct: 36 DALTGLGNRKSFEEALHRTVNVPPAPGGTGKPTSLIVLDIDYFKRFNDLYGHLTGDQVLR 95 Query: 155 -IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISS 212 +A + + VV G + R GGEEF + +EA +A +R + + + + S+ Sbjct: 96 LVAIVMREHVVQAGATL--ARFGGEEFGIVLPETDLEEARAVAERVRTSVTSRELVKRST 153 Query: 213 GPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 G S+ +T+S GIA + + +++ RAD L+ AK++GR+R + +++ Sbjct: 154 GESLGKVTVSLGIATQHGDDNAVSLLERADACLFAAKRAGRDRTLDETEV 203 >gi|304311724|ref|YP_003811322.1| hypothetical protein HDN1F_20940 [gamma proteobacterium HdN1] gi|301797457|emb|CBL45677.1| Hypothetical protein HDN1F_20940 [gamma proteobacterium HdN1] Length = 670 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 9/137 (6%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA------A 183 +++F D+D FK IND+ GHPVGD+++ + D+L TP V RLGG+EF + Sbjct: 265 AVLFIDLDLFKNINDSLGHPVGDQLLIQVGDRLQKHLRTPDIVARLGGDEFIVILPELHS 324 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242 + ++ A +AN L+ I + ++ P +++T S GIA +E I II +AD Sbjct: 325 EIAQAKISAQHVANKLQAAI-GQEFQVNQHP-LNMTCSIGIAIFPIEQETIHDIIRQADT 382 Query: 243 ALYVAKKSGRNRVVCFS 259 A+Y +K+ GRN V F+ Sbjct: 383 AMYRSKRDGRNLVRFFT 399 >gi|251779276|ref|ZP_04822196.1| ggdef domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083591|gb|EES49481.1| ggdef domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1728 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 11/165 (6%) Query: 104 SRIDCLSGLLNHS----AF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S +D L+G+ N AF I S + S++ FDID FK +ND +GH GD+V+ Sbjct: 1392 STLDKLTGVYNRKYLEKAFCDLIDDSYSKEREFSLIIFDIDDFKGVNDRYGHQTGDEVLI 1451 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ ++ R GGEEF SE EA + + +R +E ++I G Sbjct: 1452 KLTKEVKNCLSKEDIFVRYGGEEFIILLPDKSEYEAYLFSEKIRNRVECAKI---LGEKR 1508 Query: 217 HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +TIS GI+ H +I ADQALY++K G+N+ +++ Sbjct: 1509 KVTISLGISVYLKHSSNSEDLIKMADQALYISKAQGKNKTTIWNE 1553 >gi|190893483|ref|YP_001980025.1| sensory box/GGDEF family protein (nitrogen fixation positive activator protein-like protein) [Rhizobium etli CIAT 652] gi|190698762|gb|ACE92847.1| putative sensory box/GGDEF family protein (nitrogen fixation positive activator protein-like protein) [Rhizobium etli CIAT 652] Length = 737 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 22/209 (10%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA------ 117 +++E L LV + + L +G+++G LK N + + D LSGL N Sbjct: 266 MVIEALGLVGMFFMVLLAIGWLAGRRLK---AEENSAREEALRDRLSGLSNRDGLGLAVD 322 Query: 118 -FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 F++ + +++ D+D FK++ND++GH GD++I ++ L V+ + R+G Sbjct: 323 GFVAEARQSKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRAVAAGLQVLIPQGAVLARIG 382 Query: 177 GEEFAAAALGSSEQEAAILAND--LRKIIENSQIN---ISSGPSIHITIS-AGIAERCHK 230 G+EFA A L E AA+ ++ L ++E +I + G SI I +S AG +R Sbjct: 383 GDEFAIAFLSDGENAAALQLSEQILDFMVEPLEIGRRVVVVGASIGIAMSPAGAIDR--- 439 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ R+D A+Y AK++GR R+ + Sbjct: 440 ---EELVRRSDLAMYKAKEAGRARMTLYD 465 >gi|218245994|ref|YP_002371365.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8801] gi|257059045|ref|YP_003136933.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8802] gi|218166472|gb|ACK65209.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8801] gi|256589211|gb|ACV00098.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8802] Length = 308 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 11/179 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYF 139 + K+L + + +L+ D L+G+ N F SL Y ++ D+D+F Sbjct: 130 QVQKQLQEACQTMKKLADTDELTGIANRRCLLEFAQREFQRSL-RYGTPFCLLMIDVDHF 188 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K IND +GHP GDK I ++ + + + F GR GGEEF ++ A +A + Sbjct: 189 KNINDKYGHPNGDKAIQWVVEIIKLGLREVDFFGRFGGEEFIVVLPQTALGGALEVAERI 248 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257 R+ I + + + ++ +T S G+A ++ + +I RAD++LY AK GRN+V+ Sbjct: 249 REAIASQPLTLEQD-TVTLTASIGVATYTGEDKTVVGMIQRADKSLYQAKAKGRNQVIA 306 >gi|167755256|ref|ZP_02427383.1| hypothetical protein CLORAM_00761 [Clostridium ramosum DSM 1402] gi|237735004|ref|ZP_04565485.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167705306|gb|EDS19885.1| hypothetical protein CLORAM_00761 [Clostridium ramosum DSM 1402] gi|229381780|gb|EEO31871.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 332 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 99/175 (56%), Gaps = 9/175 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 KEL +S ++ R D L+G+LN + ++ S ++ I+ DIDYFK++NDN G Sbjct: 160 KELEMSNQQVIYNLRHDYLTGILNRPSLEKEVTEAMSNHQYGVILVLDIDYFKEVNDNNG 219 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENS 206 HP GD+V+ L++ + F + + GR+GG+EF AL + +A + +++ +N Sbjct: 220 HPYGDEVLIKLANTMQESFKSGI-CGRIGGDEFIIYLALDDANYDA--IEKTIKEFKQNW 276 Query: 207 QINISS-GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 Q NI++ S IT+S G A H + + AD+ALY++K +GRNR+ + Sbjct: 277 QKNITTIDRSSTITLSIGGAYYPKHGKNYQELWSNADKALYLSKNNGRNRISIYQ 331 >gi|331014876|gb|EGH94932.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 677 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 8/157 (5%) Query: 106 IDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+GL N +++ L +K S++ D+DYFK+IND +GH GDKV+ + Sbjct: 519 IDPLTGLPNRASWGERLEQEMADWQRDKNSLLVCILDLDYFKRINDGYGHLAGDKVLKIV 578 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ F+ R GGEEF + L ++LR +E + G + I Sbjct: 579 ANVFKKRLRPADFLARFGGEEFVMLLPATLLGAGLTLLDELRTAVELCPFHFK-GERVTI 637 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+ E T I RADQALY AK++GRNRV Sbjct: 638 TVSIGVTALRTGERSDTAIKRADQALYRAKENGRNRV 674 >gi|150397885|ref|YP_001328352.1| diguanylate cyclase [Sinorhizobium medicae WSM419] gi|150029400|gb|ABR61517.1| diguanylate cyclase [Sinorhizobium medicae WSM419] Length = 316 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDK 153 + S++D L+ L N + L + + + + DIDYFK IND FGH GD+ Sbjct: 138 RASQVDDLTSLPNRRYTMERLKEFIQNCAENPHMWGCVAIIDIDYFKAINDRFGHYRGDE 197 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + Q+ GR+GGEEF ++ EA ++ + L I +++ +S+ Sbjct: 198 VLLDFARQMQEFVRRSDCFGRIGGEEFMLILPDTTVSEANLILDRLLDKIRSAR-PLSNI 256 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P T S G+AE + + I RAD ALY+AK+ GR+RV F+ Sbjct: 257 PEFFYTCSVGLAEYREGDSVGDIYSRADAALYIAKREGRDRVSRFT 302 >gi|86357391|ref|YP_469283.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] gi|86281493|gb|ABC90556.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] Length = 418 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 4/128 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ D D+FK +ND GH GD+V+ ++ +L + + R GGEEF A G+S Sbjct: 289 TVLIIDADHFKDVNDGHGHLQGDEVLKAIAARLGATLRSSDRIFRFGGEEFVAVCPGTSH 348 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAK 248 +E +L LR IE S P +T+S G+A +T++ AD LY AK Sbjct: 349 EEGLLLGERLRWTIETSVKTPDEKP---VTVSIGVATADEDGASFTTVLAAADDRLYAAK 405 Query: 249 KSGRNRVV 256 KSGRN VV Sbjct: 406 KSGRNCVV 413 >gi|127512723|ref|YP_001093920.1| diguanylate cyclase [Shewanella loihica PV-4] gi|126638018|gb|ABO23661.1| diguanylate cyclase [Shewanella loihica PV-4] Length = 339 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 6/156 (3%) Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G LN AF L E ++ D+D+FK ND +GH +GD V+ ++ +L Sbjct: 182 DALTGALNRRAFDQDLKGLLAQSPEGTCLILADVDHFKSFNDTYGHHLGDNVLKAVAKRL 241 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + + R GGEEFA S +++A LA+ +R+ +E + ISA Sbjct: 242 NESCRDGVKLYRYGGEEFALIVPNSHQRKARHLADAMRRTLEKISLKDRRKNQTIDKISA 301 Query: 223 --GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G++E K+ ++I R D LY AK+ GRNRV+ Sbjct: 302 SFGVSEWQAKDTFESLIERTDGFLYDAKRLGRNRVM 337 >gi|302134297|ref|ZP_07260287.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 528 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 11/170 (6%) Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND+FGH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A ++ + I + QI + P + Sbjct: 396 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAENILQAIRDEQITHPASPFGIV 455 Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A IS +I AD+ALY AK GRNRV S+I NT Sbjct: 456 TVSLGVATVVGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIAFNT 505 >gi|239626912|ref|ZP_04669943.1| GGDEF domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239517058|gb|EEQ56924.1| GGDEF domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 536 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 10/179 (5%) Query: 89 ILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQIN 143 I +++ + N Q+ S D L+GL N F + + +S+++ D+D+FK +N Sbjct: 353 IFRDVTVERNLEKQILHSSNTDFLTGLYNRRYFYQYINHNRGDRAVSLLYIDLDWFKAVN 412 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGD V+ + LV F FV RLGG+EF A LG E L + + + Sbjct: 413 DTYGHKVGDAVLTGTARMLVESFPDD-FVARLGGDEFLVARLGECSMEQ--LEKEAGEFL 469 Query: 204 ENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 E + + ++ S GIA+ + I +I +DQALY AKK GR+R + + Sbjct: 470 EKLNARFQASREMQSLSASIGIAQGKDGDMDIDLLIQHSDQALYQAKKEGRSRYCVYRE 528 >gi|146311662|ref|YP_001176736.1| diguanylate cyclase [Enterobacter sp. 638] gi|145318538|gb|ABP60685.1| diguanylate cyclase [Enterobacter sp. 638] Length = 482 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 6/132 (4%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+++ DIDYFK INDN+GH GD V+A + ++ G V R+GGEEFA Sbjct: 332 LTVMLLDIDYFKSINDNYGHECGDNVLAAFAGKVQQEVGEDGIVARMGGEEFAVVVDSVD 391 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGI----AERCHKEPI-STIIYRADQA 243 Q+ LA +R+ I S I + IT+S G+ AE + + ++ AD Sbjct: 392 AQQGLALAERIRETIA-SHPFIWRQQRLFITVSIGLGSAKAESWQLTDVFNKLMAEADDY 450 Query: 244 LYVAKKSGRNRV 255 LY +KK+GRNR+ Sbjct: 451 LYRSKKAGRNRI 462 >gi|331019676|gb|EGH99732.1| GGDEF protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 512 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 113/242 (46%), Gaps = 30/242 (12%) Query: 34 FFSIFIATVIF---IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90 FSIF+ V++ + ++ ++ + L Y ++ E V+ S +LL + +L Sbjct: 1 MFSIFLLAVVWEFKLESLAMYAMDLP--YDPDFEDAERWRFVLTSTAFALLSMVVPFILL 58 Query: 91 KELFI----SYNRI-------SQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFD 135 K L SYN + L+R D LSGLLN H ++ L + + ++ D Sbjct: 59 KRLMQRLQSSYNDLLVAQALSDSLARHDPLSGLLNRRVFHEQLVARLQQESTQTAVFLID 118 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ-EAA 193 +D FK IND GH VGD I +++ L G V RLGG+EF A G Q E A Sbjct: 119 LDKFKLINDTHGHAVGDAAICAVAESLRDATTGWQASVARLGGDEFGLAVSGDFSQFELA 178 Query: 194 ILANDLRKIIENSQINISSGPSIHITISA--GIA-ERCHKEPISTIIYRADQALYVAKKS 250 LA ++ ++I +SS +T+SA G+A ++ RAD A+Y K Sbjct: 179 ALAENVL-----AKIALSSAGLPRVTLSATLGVAISPLDGSDAEVLLQRADSAMYRGKNG 233 Query: 251 GR 252 GR Sbjct: 234 GR 235 >gi|298292199|ref|YP_003694138.1| diguanylate cyclase [Starkeya novella DSM 506] gi|296928710|gb|ADH89519.1| diguanylate cyclase [Starkeya novella DSM 506] Length = 398 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 15/163 (9%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N F+ + K ++++ D+D FKQ+ND FGH GD+V+ ++ L+ Sbjct: 224 DELTGLFNRRGFMEEAVPASRKGGPMALMVLDLDRFKQVNDQFGHAAGDRVLVLFAEVLL 283 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII--ENSQINISSGPSIHITIS 221 + R+GGEEFAA + A +A +R E +++ + +G ++ ++S Sbjct: 284 LELRPGDVAARIGGEEFAALLPDVRPETARQIAERIRGSFRQELNRLKLGAG-TLECSVS 342 Query: 222 AGIA-----ERCHKEPISTIIY----RADQALYVAKKSGRNRV 255 G+A + +E I I RAD ALY AK GRNR+ Sbjct: 343 IGLALGAAPQGPAREEIEAAILRNMARADAALYEAKAQGRNRI 385 >gi|296535607|ref|ZP_06897787.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957] gi|296264062|gb|EFH10507.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957] Length = 459 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 2/160 (1%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +R +L+ D L+GL N I L N +++ D+D FK +ND +GH VGD V+ Sbjct: 285 DRSLELAVTDSLTGLRNRRYIIRHLEGLLRNGPAALLMLDVDRFKAVNDTYGHGVGDIVL 344 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ ++ V R GGEEF A ++++EA +A+ LR + + + +S Sbjct: 345 REVAARMKRHLRDVDVVARFGGEEFVVAMAAATQEEAMQIADRLRLSMAENPVPVSPERR 404 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT S G+A E + ++ AD ALY AK +GRNR+ Sbjct: 405 LGITASIGVALAKGGEALPRLMAAADAALYRAKANGRNRI 444 >gi|291617190|ref|YP_003519932.1| YedQ [Pantoea ananatis LMG 20103] gi|291152220|gb|ADD76804.1| YedQ [Pantoea ananatis LMG 20103] Length = 390 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 122/263 (46%), Gaps = 44/263 (16%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE-------- 62 +WL +F P +++ + F + +F+ N T G++ Sbjct: 143 LWLARRDMNTTFWPAQLLLWTHLLFHV---ARLFLDN--------TRPVGIQGAISGSDF 191 Query: 63 --YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 Y+++E++ L +I T+++L +++ E + N + S D L+ + N A S Sbjct: 192 SIYVILESM-LFVIGFTVTIL------AMVNER--TRNALKDASLHDPLTNIWNRRALFS 242 Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 + N L++V FD+D+FK IND +GH GD+V+ +++ Sbjct: 243 GADAMIRFCLKQNRALTVVLFDLDHFKGINDRYGHQQGDRVLIDFCNRVSGTLPQDGRFA 302 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232 RLGGEEF AA L S ++A + +R+ +++S+ I ++S G A + E Sbjct: 303 RLGGEEF-AALLPLSFEQARVWCEQVRQTVQHSRPG-----QIAYSVSIGFATADNGEID 356 Query: 233 ISTIIYRADQALYVAKKSGRNRV 255 ++ AD+ALY AK GRNR Sbjct: 357 FGQLMALADKALYRAKAKGRNRT 379 >gi|291279477|ref|YP_003496312.1| hypothetical protein DEFDS_1087 [Deferribacter desulfuricans SSM1] gi|290754179|dbj|BAI80556.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 404 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 14/162 (8%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ + N + Y + LS++ DID FK++NDNFGH +GD V+ + Sbjct: 246 VDSLTNIYNRNYLERKYPEEFEKFKRYGQPLSVIMLDIDDFKKVNDNFGHQIGDNVLRYF 305 Query: 159 SDQLVVVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + V+ V R GGEEF + ++A ++AN + K + ++ + G + Sbjct: 306 A---TVIKNNIRKVDIPFRYGGEEFLILLPHTKLEQAMVVANRIHKELNDTMFKV-KGLT 361 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +T S G+ E + + ++I R D L KK G+NRV+ Sbjct: 362 LKVTASIGVTEARESDSMESLIKRVDDLLLKVKKEGKNRVLS 403 >gi|254506998|ref|ZP_05119136.1| ggdef family protein [Vibrio parahaemolyticus 16] gi|219549993|gb|EED26980.1| ggdef family protein [Vibrio parahaemolyticus 16] Length = 292 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 15/172 (8%) Query: 104 SRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 S D L+GLLN L E + + D+D+FK IND FGH +GD++ Sbjct: 111 SERDKLTGLLNRRTLEERLSQSFDLVSPREGGEHMWVAIIDLDHFKSINDQFGHMIGDEI 170 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + S Q+ F + R GGEEF + A RK IE + P Sbjct: 171 LLMFSQQMQNYFCDNEQLFRFGGEEFVVLLPQQDQSHAYDKLEGFRKHIEKYRF-----P 225 Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + IT+S G+ E + TI+ AD+ALY+AK GRN++ + ++ + Sbjct: 226 QVQQITLSCGLCAISRHEYLPTILGHADKALYLAKTEGRNQIRSYDELAKDN 277 >gi|163801103|ref|ZP_02195003.1| GGDEF family protein [Vibrio sp. AND4] gi|159175452|gb|EDP60249.1| GGDEF family protein [Vibrio sp. AND4] Length = 446 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 18/165 (10%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G +N A S L +E LS+++ D+D FK++ND +GH VGD Sbjct: 277 AELAHRDALTGAMNRHALQSWLEQQARLVRWGHELLSVLYVDLDKFKRVNDKYGHQVGDD 336 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ + + R GGEEF + ++A A +R+++E Sbjct: 337 ILREFVMVITSAIQPDDRLVRWGGEEFVVFCPNTDIRQATKRAEVVRQMVEKHHW----- 391 Query: 214 PSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +H +T S G+A+ E +S + RAD+ LY+AK++GRNR Sbjct: 392 --VHGEALTCSVGVAQ-MQDERVSETMARADEVLYLAKRNGRNRT 433 >gi|153803816|ref|ZP_01958402.1| sensory box/ggdef family protein [Vibrio cholerae MZO-3] gi|124120648|gb|EAY39391.1| sensory box/ggdef family protein [Vibrio cholerae MZO-3] Length = 255 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLS--IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ Y ++ + DID+FK+IND FGH Sbjct: 86 NRLRELSEKDALTDLWNRRKFDQTISLECAKRRRYPDQAQSCLAIIDIDHFKRINDKFGH 145 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++ + F+ R+GGEEFA +S +EA + N +R + Sbjct: 146 NEGDLVLRTVAKGIQDQLRESDFIARIGGEEFAIIFPYTSIEEAEQVLNRVR-------L 198 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+S +T+S G+ + C S RAD ALY +K SGRN++ + +E Sbjct: 199 HIASLHHQQVTLSGGVTDVCTSPDQS--YKRADLALYESKTSGRNQISVLTTME 250 >gi|114706503|ref|ZP_01439404.1| periplasmic sensor diguanylate cyclase (GGDEF) [Fulvimarina pelagi HTCC2506] gi|114537895|gb|EAU41018.1| periplasmic sensor diguanylate cyclase (GGDEF) [Fulvimarina pelagi HTCC2506] Length = 442 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 15/158 (9%) Query: 107 DCLSGLLNHSAFISSL---------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+GL N AF S+ G ++++ DID+FKQ+ND +GH GDKV+ Sbjct: 214 DSLTGLPNRRAFDQSVERLSDLRERGEVPGPVALLLIDIDHFKQVNDQWGHFFGDKVLRS 273 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +S + + R GGEE A + +A +A +R +EN + + S+ Sbjct: 274 VSTTIRRQVRRGDILARYGGEEIAVILPSTQHSDACSVAERIRMAVENGEFRVKITASVG 333 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I I C + AD+ALY AKK+GRNR+ Sbjct: 334 VAIDEDINAFCD------LFQAADRALYRAKKNGRNRI 365 >gi|325497407|gb|EGC95266.1| hypothetical protein ECD227_1504 [Escherichia fergusonii ECD227] Length = 366 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+GLLN F S G ++ S++ D D FK +ND +GH GD Sbjct: 205 LEQAAMRDALTGLLNRRQFFLLTEHNSSQPGLMSQDYSLLLIDTDRFKSVNDLYGHQKGD 264 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+ L V R GGEEF ++ +A LA +R + ++I ++ Sbjct: 265 DVLCVLARTLESCARKGDLVFRWGGEEFVLLLPRTTLDDALALAETIRAQV--AKITLTG 322 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 P T+S G+A E I + R D ALY AK GRNRV+ Sbjct: 323 LPRF--TVSIGVARHEIDETIDALFKRVDDALYRAKNDGRNRVLA 365 >gi|325168565|ref|YP_004280355.1| diguanylate cyclase [Agrobacterium sp. H13-3] gi|325064288|gb|ADY67977.1| diguanylate cyclase [Agrobacterium sp. H13-3] Length = 404 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 19/165 (11%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++S+ D L+GL N AF +++ +S++ FD+D+FK IND GH GDKV+ Sbjct: 219 RVSQTDQLTGLANRHAFFEQASRILRERHDDPVSLLAFDLDHFKAINDRHGHQTGDKVLQ 278 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----LANDLRKIIENSQINIS 211 ++ G + RLGGEEF AA L + A+ +A+ K ++ Sbjct: 279 LFAETAREEAGPDALIVRLGGEEF-AALLPRCDHSQALSRGLAIASRFAKAAARAE---- 333 Query: 212 SGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G T+S G+ A CH ++ ++ AD ALY AK GRNRV Sbjct: 334 -GLETQATVSIGLAAPDCHD--LAGMLASADGALYRAKALGRNRV 375 >gi|220934578|ref|YP_002513477.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] gi|219995888|gb|ACL72490.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] Length = 464 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ QL+ D L+G+ N + + LS++ D+D+FK+IND++GH Sbjct: 297 RKLEQLASTDALTGVANRRQLVERADMEVPRSERHGAPLSLLCLDLDHFKRINDDYGHLA 356 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ +++ + + R+GGEEF + A +A +R +E I + Sbjct: 357 GDEVLKQVAEAIQQSLRPSDLLARVGGEEFHVLLPDTDLAGARDVAERIRVKLEGLDIPV 416 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G +H+T+S G A+ + ++ + AD+ LY AK GRNRVV Sbjct: 417 -QGVVLHVTVSVGCAQLGPDGADMKSLTHTADERLYQAKALGRNRVV 462 >gi|170729523|ref|YP_001774956.1| GGDEF family protein [Xylella fastidiosa M12] gi|167964316|gb|ACA11326.1| GGDEF family protein [Xylella fastidiosa M12] Length = 554 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 20/163 (12%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G L A I LS+VF DID+FK+IND +GH GD + + Sbjct: 395 VDGLTGALTRVAIERRLERDIDDARQMGTPLSVVFIDIDHFKRINDEYGHAAGDACLRQV 454 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214 ++ +GR GG+E A G+ A R++ E ++ +SS P Sbjct: 455 VQRVRGWLRASDALGRHGGDELIAILPGADLAAA-------RRVAEGIRVAVSSQPFQFE 507 Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T+S G+A E I ++ RAD LY +K +GR+RV Sbjct: 508 CTRLRCTLSLGVASWLPDESIEALLQRADNGLYASKAAGRDRV 550 >gi|238796548|ref|ZP_04640055.1| hypothetical protein ymoll0001_30130 [Yersinia mollaretii ATCC 43969] gi|238719526|gb|EEQ11335.1| hypothetical protein ymoll0001_30130 [Yersinia mollaretii ATCC 43969] Length = 414 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 6/134 (4%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 Y S++ D+D+FK IND GH GD+V+ L+ L + V R GGEEFA Sbjct: 285 YGHNFSLILLDVDHFKSINDQLGHNKGDEVLILLARTLESIIRESDIVFRWGGEEFAILL 344 Query: 185 LGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 ++ + A LA +R+ I+ Q N+ +T+S G+A+ E ++ R D+A Sbjct: 345 PLTNLEGALQLAESIRETIQMICQPNLPQ-----LTVSIGVAQHQVGEDTDSLFKRMDEA 399 Query: 244 LYVAKKSGRNRVVC 257 LY AK SGRNRV+ Sbjct: 400 LYRAKASGRNRVLA 413 >gi|326390488|ref|ZP_08212045.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Thermoanaerobacter ethanolicus JW 200] gi|325993456|gb|EGD51891.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Thermoanaerobacter ethanolicus JW 200] Length = 633 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 76/155 (49%), Gaps = 13/155 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N F+ L E+ S+V FD+D+FK IND FGH GD V+ ++ Sbjct: 479 DPLTNIYNRRFFMQMLEQEIERTKRNKKPFSLVMFDLDHFKNINDRFGHAAGDIVLRSVA 538 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HI 218 D + + R GGEEF +S +A LA +LRK QI++ I I Sbjct: 539 DTVKGRIRKTDYFARWGGEEFIILLPETSLDDAVALAEELRK-----QISMMELEGIDKI 593 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 T S G+ E + I T++ R D LY AK GRN Sbjct: 594 TASFGVTEYSDTDTIDTVLIRVDNMLYEAKGEGRN 628 >gi|218134600|ref|ZP_03463404.1| hypothetical protein BACPEC_02503 [Bacteroides pectinophilus ATCC 43243] gi|217989985|gb|EEC55996.1| hypothetical protein BACPEC_02503 [Bacteroides pectinophilus ATCC 43243] Length = 576 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 14/198 (7%) Query: 71 LVIISITISLLLGYISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFISSLGSYNEK 128 L ++ + IS+L I ++ LFI R Q + D L+GLLN S F L Y + Sbjct: 248 LAVVGVIISVL---IEALVIAFLFIDKQRQYFRQRAITDELTGLLNRSGFNDELDRYARE 304 Query: 129 LSI-----VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + + D+D FK IND +GH VGD+ + L+ +V F +GR GG+EF Sbjct: 305 IGSKPCVGIMLDVDDFKSINDIYGHAVGDEALKNLARSMVNEFPDNSIIGRNGGDEFCIV 364 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242 E +A + + + ++ G + IS G AE H S ++ AD Sbjct: 365 L---KETDAETAGDQIERFCHQQRMFRFHGREYNYRISLGYAEYPKHAGKRSELLRCADV 421 Query: 243 ALYVAKKSGRNRVVCFSD 260 ALY K G+N +C++D Sbjct: 422 ALYEVKLKGKNGCMCYTD 439 >gi|78778295|ref|YP_394610.1| response regulator receiver /GGDEF/PAS/PAC domain-containing protein [Sulfurimonas denitrificans DSM 1251] gi|78498835|gb|ABB45375.1| response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Sulfurimonas denitrificans DSM 1251] Length = 849 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 89/186 (47%), Gaps = 18/186 (9%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKL---SIVFFDIDYFKQI 142 +KE R+ LS D L+ L N F + LG + ++ D+DYFKQ Sbjct: 253 IKEDITDKKRVEMLSVTDMLTSLFNRRYFSEILVKELGRAKRNMLNFCLIIVDVDYFKQY 312 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD V+ +++ L + G F R+GGEEFA + + ++R Sbjct: 313 NDFYGHQAGDNVLRKIAECLSISSGRGNDFAFRIGGEEFAIITSNMDDDDVMNYVENIRL 372 Query: 202 IIENSQIN-ISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNR 254 IEN +IN S S ++T S G+ E + + I AD+ LY AKK GRNR Sbjct: 373 SIENLKINHEKSKVSDYVTASFGVMNFSPSIELLSSDDVYNI---ADKNLYEAKKDGRNR 429 Query: 255 VVCFSD 260 VV + + Sbjct: 430 VVFYKN 435 >gi|257092657|ref|YP_003166298.1| diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045181|gb|ACV34369.1| diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 455 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 10/155 (6%) Query: 110 SGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 +GL + I+ +G+ +L ++ DID F+Q+N++FGH GD VIA +++++ G P Sbjct: 39 AGLQAAAVLIADVGARQARLCAIWLDIDRFRQVNESFGHAAGDGVIARIAERIRSAIGLP 98 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDL----RKIIENSQINISSGPSIHITISAGIA 225 + R+GG+EF A A LA L R + ++ I SI I + Sbjct: 99 CALLRMGGDEFVVLAAVRDRSAATQLARQLLVEIRLPLTVDELLIRPSASIGIAL----- 153 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 E+ +EP + + RAD+A+ AK+ G NR+ D Sbjct: 154 EQVGEEP-AAWLERADRAMLEAKRRGGNRLALSGD 187 >gi|167848143|ref|ZP_02473651.1| hypothetical protein BpseB_22921 [Burkholderia pseudomallei B7210] gi|167896698|ref|ZP_02484100.1| hypothetical protein Bpse7_23345 [Burkholderia pseudomallei 7894] Length = 441 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N L++V D+D+FKQ N Sbjct: 254 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTPLALVMVDVDHFKQYN 313 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V G FV R GGEEFA G+ E+ AA +A R+ Sbjct: 314 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 373 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E +I AD ALY AK GRN Sbjct: 374 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 425 >gi|77458522|ref|YP_348027.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gi|77382525|gb|ABA74038.1| putative GGDEF domain protein [Pseudomonas fluorescens Pf0-1] Length = 503 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 10/176 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 ++L S ++ L+ D L+GL N F +L + L+++ DIDYFK N Sbjct: 322 QQLLSSNRQLELLAMKDALTGLANRRCFDVTLDLEARRAQRDGTSLALLMIDIDYFKLFN 381 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D++GH GD + + + + P V R GGEE + + A I+A + Sbjct: 382 DSYGHVAGDDCLQRVGNVVETCVRRPSDLVARYGGEEMGVIMPNTDSEGAQIVAQLILDR 441 Query: 203 IENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256 ++ + I+ S P +++S GIA P+ +I ADQALY AK GRNR V Sbjct: 442 LQQANISHESSPLGRVSVSIGIATAAGSRLTPVQGLIEAADQALYSAKALGRNRSV 497 >gi|117923549|ref|YP_864166.1| cyclic nucleotide-binding protein [Magnetococcus sp. MC-1] gi|117607305|gb|ABK42760.1| cyclic nucleotide-binding protein [Magnetococcus sp. MC-1] Length = 592 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 17/168 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 RI+ + D L+G+ N S F I + ++L+I+F D+D FK +NDN GH Sbjct: 414 RRITYQANYDALTGIPNRSYFQQLLNQSIQRAAAEGKRLAIIFIDLDRFKWVNDNLGHGA 473 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIEN-SQ 207 GD+++ S + V RLGG+EF A +G +EQ A+ ++++E+ ++ Sbjct: 474 GDELLRLSSKRAASCLKGRDTVARLGGDEFVAILEHVGDTEQAFAV----SKRVLESLNR 529 Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 + G ++I+ S G+A + +P ++ RAD+A+Y +K++GRN Sbjct: 530 PFMLDGKEVYISGSMGVAIYPQDATQP-EELLTRADEAMYCSKRAGRN 576 >gi|325961513|ref|YP_004239419.1| diguanylate cyclase (GGDEF) domain-containing protein [Arthrobacter phenanthrenivorans Sphe3] gi|323467600|gb|ADX71285.1| diguanylate cyclase (GGDEF) domain-containing protein [Arthrobacter phenanthrenivorans Sphe3] Length = 383 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 75/156 (48%), Gaps = 11/156 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSI-------VFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN AF++ LSI V D+D+FK IND +GH GD + + Sbjct: 223 DDLTGLLNRKAFLNLAAEQLSDLSITRGAGALVLADLDHFKAINDTYGHAAGDIALQTFA 282 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGPSIHI 218 D + VGR GGEEF G+S + A I+A + R++ + ++ P++ Sbjct: 283 DACTATVRSTDLVGRYGGEEFVLLIPGASAERAEIIAEAISRRLASATTVDGMEMPTVSY 342 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 IS E +I AD ALY AK GRNR Sbjct: 343 GISTYDGATTDVE---RLIASADAALYSAKSLGRNR 375 >gi|292492698|ref|YP_003528137.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291581293|gb|ADE15750.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 327 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 +L + ++ QLS +D L+G+ N F ++ LS++ DID FK ND Sbjct: 147 QLEAANEQLRQLSSLDELTGVANRRQFEMTIRQEFRRAMRNKSSLSVIMIDIDNFKAYND 206 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD + ++ L V P + R GGEEF + + A LA LR+ + Sbjct: 207 IYGHQAGDDCLRQVAKALSSVLKRPNDLLARYGGEEFVVILPETGSKGARSLAESLRRAV 266 Query: 204 ENSQI--NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E +I +S + +TIS G++ E + +I ADQALY +K++GRNRV Sbjct: 267 EILKIPHRYASQSGLQVTISLGVSTLVPQRDEDPTKLIAAADQALYQSKRAGRNRVT 323 >gi|283833179|ref|ZP_06352920.1| putative GGDEF domain protein [Citrobacter youngae ATCC 29220] gi|291070812|gb|EFE08921.1| putative GGDEF domain protein [Citrobacter youngae ATCC 29220] Length = 308 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 6/167 (3%) Query: 104 SRIDCLSGL-----LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S ID L+GL L+ S + + L I+ DID FK +ND +GH VGD V+ L Sbjct: 129 SNIDVLTGLPGRRMLDESFDQQLIDAEPLNLYILLLDIDRFKHVNDTYGHLVGDVVLRAL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + R GGEEF ++++A L +++ +I + G I I Sbjct: 189 ASNFLAWTRYDEVAYRYGGEEFIIIIRTKTDEQARQAGLRLCQLVGQKKIPYADG-EIAI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T++AGI E + T + RAD+A+Y K+SGRNR + + E T Sbjct: 248 TVTAGITRAQRDEKLDTALGRADRAMYQGKQSGRNRCMFMDEREQIT 294 >gi|53721830|ref|YP_110815.1| hypothetical protein BPSS0805 [Burkholderia pseudomallei K96243] gi|52212244|emb|CAH38266.1| putative membrane protein [Burkholderia pseudomallei K96243] Length = 688 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IND+ GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A ++ + + + N G ++ +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARNVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+SGR Sbjct: 406 AAKRSGR 412 >gi|95930085|ref|ZP_01312824.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95133779|gb|EAT15439.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 423 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 14/192 (7%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAF-------IS 120 L V + I LL G L L NR + +LS D L+GL N F I+ Sbjct: 231 LGFVAVYFMIRALLVKKDGQDL--LLEQQNRELDRLSTTDPLTGLWNRLRFNHETPRYIA 288 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 S E L++ DID+FK+IND FGH +GD+V+ S L F+ RLGGEEF Sbjct: 289 QAQSRKESLAMAVIDIDHFKKINDTFGHSIGDEVLKIFSAYLQEKCRKTDFLARLGGEEF 348 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 ++ E L + ++++E I + ++ +T S G+A E S RA Sbjct: 349 VILTPAITKTE---LEHFCQRLLEG-MIVVEYPHNLKLTASVGVALYQDGEDQSLFFSRA 404 Query: 241 DQALYVAKKSGR 252 D+A+Y +K+ GR Sbjct: 405 DRAMYESKEKGR 416 >gi|126442988|ref|YP_001062179.1| GGDEF domain/EAL domain-containing protein [Burkholderia pseudomallei 668] gi|126222479|gb|ABN85984.1| ggdef domain/eal domain protein [Burkholderia pseudomallei 668] Length = 688 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IND+ GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A ++ + + + N G ++ +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARNVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+SGR Sbjct: 406 AAKRSGR 412 >gi|167741053|ref|ZP_02413827.1| hypothetical protein Bpse14_23506 [Burkholderia pseudomallei 14] gi|167818235|ref|ZP_02449915.1| hypothetical protein Bpse9_24066 [Burkholderia pseudomallei 91] gi|167921323|ref|ZP_02508414.1| hypothetical protein BpseBC_22428 [Burkholderia pseudomallei BCC215] gi|254182865|ref|ZP_04889458.1| diguanylate cyclase [Burkholderia pseudomallei 1655] gi|184213399|gb|EDU10442.1| diguanylate cyclase [Burkholderia pseudomallei 1655] Length = 441 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N L++V D+D+FKQ N Sbjct: 254 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTPLALVMVDVDHFKQYN 313 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V G FV R GGEEFA G+ E+ AA +A R+ Sbjct: 314 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 373 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E +I AD ALY AK GRN Sbjct: 374 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 425 >gi|313683084|ref|YP_004060822.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM 16994] gi|313155944|gb|ADR34622.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM 16994] Length = 551 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 78/162 (48%), Gaps = 11/162 (6%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N I+ Y+ LSI+ D+D+FK +ND +GH GD V Sbjct: 393 ELAITDRLTGLYNRLKLDEVLNYEIAQTSRYDTPLSIIIIDVDHFKNVNDTYGHQTGDMV 452 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L GR GGEEF ++ A A +R IEN ++ Sbjct: 453 LKEVAQILRSCSRKSDTSGRWGGEEFLIILPNTNLTGALEAAEKIRTAIENYPFSVVG-- 510 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T S G++E E + I RADQALY AK GRN+VV Sbjct: 511 --QKTASLGVSEFLANENEDSFIERADQALYRAKSGGRNQVV 550 >gi|126651346|ref|ZP_01723553.1| two-component sensor histidine kinase [Bacillus sp. B14905] gi|126591875|gb|EAZ85958.1| two-component sensor histidine kinase [Bacillus sp. B14905] Length = 638 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 89/183 (48%), Gaps = 22/183 (12%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGL-----LNHSAFISSLGSYNEKLSIVFFDIDYF 139 I+ SIL+ ++ ++ +D L+ L L+H F+ Y++ + DID F Sbjct: 465 IANSILR------TQLQEMVDLDHLTKLYARSYLDH--FVEKSLEYDQSGMFLLIDIDNF 516 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND +GH VGDK++ ++ QL G+ R GGEE + SE+EA LA + Sbjct: 517 KRINDTYGHQVGDKILMQIAVQLRETIGSRGICARWGGEEMSVYVPNISEKEALELAAAI 576 Query: 200 RKIIENSQINISSGPSIHITISAG-IAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257 ++ I S +TISAG I P ++ AD ALY AK SG+NR Sbjct: 577 VEV-------IPSATDPQVTISAGLITWNDQDRPAFQSVFLHADTALYEAKNSGKNRFCI 629 Query: 258 FSD 260 D Sbjct: 630 HGD 632 >gi|26986959|ref|NP_742384.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida KT2440] gi|24981572|gb|AAN65848.1|AE016213_4 sensory box protein [Pseudomonas putida KT2440] Length = 328 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 4/130 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK+IND++GH GD+V+ ++D V GR+GGEEFAA G + Sbjct: 199 LAFLLLDIDDFKRINDSYGHQEGDQVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCT 258 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYV 246 Q A +A L++ I++ ++ S G + +T+S G+ ++ + ++ RAD A+Y Sbjct: 259 AQIAEQIAERLQRQIQH--LSFSHGQQTYGVTVSQGLTGLTDEDVALDSLYARADAAMYQ 316 Query: 247 AKKSGRNRVV 256 AK+ G+N++V Sbjct: 317 AKRQGKNQIV 326 >gi|332527977|ref|ZP_08404011.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2] gi|332112551|gb|EGJ12344.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2] Length = 229 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 19/168 (11%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GL N AF I + E ++ DID+FK +ND GH GD+VI Sbjct: 40 LSSRDALTGLANRRAFQLALEREIDRVARSGEPALMLVADIDHFKLVNDRHGHAAGDEVI 99 Query: 156 ----AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 A L+D + PM V R+GGEEFA +A +R+ +E +++ Sbjct: 100 RAVAAVLADSV-----RPMDLVARVGGEEFAIILPNCPHTFGLTVAERIRQKVERMSVSV 154 Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +G ++ +++S G A + + + + RAD LY AK +GRNRV+ Sbjct: 155 GNGRALSVSVSVGGAFAPQWVRSTPALWLERADLQLYAAKAAGRNRVL 202 >gi|300856764|ref|YP_003781748.1| putative membrane-bound protein [Clostridium ljungdahlii DSM 13528] gi|300436879|gb|ADK16646.1| putative membrane-bound protein with a GGDEF domain [Clostridium ljungdahlii DSM 13528] Length = 395 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 89/173 (51%), Gaps = 18/173 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 ++ +LS+ID L+G+ N F ++ + ++ LS++ DID+FK ND++GH Sbjct: 225 QKLEKLSQIDSLTGIFNRFVFDKTIEAEWDRCKRYFIPLSLIMIDIDFFKAFNDSYGHQA 284 Query: 151 GDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208 GD + +S L + V R GGEEFA ++ A A LRK +E I Sbjct: 285 GDDCLRQVSRVLSSSARRSSDTVARYGGEEFAVVLTHMEKESALEFAEQLRKKVEQLAIP 344 Query: 209 NISSGPSIHITISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRVV 256 ++ S S +ITIS GI C P I I AD+ALY AKK RN+VV Sbjct: 345 HMYSSISNYITISLGI---CTVIPSDMLSIEQFIKTADEALYEAKKC-RNKVV 393 >gi|86751742|ref|YP_488238.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] gi|86574770|gb|ABD09327.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] Length = 904 Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 16/165 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +I+ L+ D L+ L N S F L G + ++++ DID FK IND GHP+GD Sbjct: 473 KIAYLAHYDSLTDLPNRSLFRQRLERELHPGRGSAACTLLYIDIDEFKSINDTLGHPIGD 532 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQI-- 208 +++ ++ +L G FV RLGG+EFA A + S+Q A+ L+ I Sbjct: 533 ELLKQVAVRLRECVGASDFVARLGGDEFAVIATSAADSDQATALAERILQTIRAPYHCLG 592 Query: 209 -NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 ++S+ SI I I+ G E I +I AD A+Y AK GR Sbjct: 593 HHLSTDASIGIAIAPG-----DGEDIDQLIKNADLAMYSAKAGGR 632 >gi|28869781|ref|NP_792400.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28853026|gb|AAO56095.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 528 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 11/170 (6%) Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND+FGH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A ++ + I + QI + P + Sbjct: 396 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAENILQAIRDEQITHPASPFGIV 455 Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A IS +I AD+ALY AK GRNRV S+I NT Sbjct: 456 TVSLGVATVVGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIAFNT 505 >gi|332991788|gb|AEF01843.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Alteromonas sp. SN2] Length = 468 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 9/166 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +L+ D L+ + N AF +L + L I D+D+FK++ND FGH G Sbjct: 289 KLEKLAYFDPLTDIPNRRAFEEALDKSTHFAHRHGYSLLIGIADVDHFKKLNDTFGHAFG 348 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209 D V+ ++ + F +GR+GGEEFA + EA + LRK +E +S + Sbjct: 349 DDVLVAVAKSMKQFFRQEDGIGRVGGEEFAFCMVLPGSHEAIDILERLRKRVELISSSLP 408 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + I+I A + ++ AD+ALY AK+ GRNRV Sbjct: 409 ALKGYDVTISIGAYYVSGVNPSETKEMVSIADEALYRAKREGRNRV 454 >gi|325124519|gb|ADY84042.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acinetobacter calcoaceticus PHEA-2] Length = 684 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + ++ LS D L+ L N +S ++K++ ++ D+D FK +ND Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH VGD+++ ++++L + R+GG+EF A ++ EA ILA + ++I+ Sbjct: 306 AFGHHVGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTNADEAVILAEKVLQLIQ 365 Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S QI SG I+I+ S G+A H + + ++ AD A+ ++K+ GRN FS Sbjct: 366 ESYQI---SGKEINISASLGVALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTIFS 419 >gi|291295409|ref|YP_003506807.1| diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Meiothermus ruber DSM 1279] gi|290470368|gb|ADD27787.1| diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Meiothermus ruber DSM 1279] Length = 1104 Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 10/159 (6%) Query: 105 RIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 + D L+G L+ +A +L + E+ +++ D+D+FK IND FGHP GD ++ Sbjct: 5 QFDPLTGALSRAALFPTLEATLHAAQLTGEETALLVLDLDHFKSINDAFGHPRGDAILRE 64 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L +++ T + R GG+EF G+ +AA+LA L ++++ + P + Sbjct: 65 LVERIQGAIRTGDLLFRYGGDEFVLLLPGTEHTQAALLAERLLSVVQSRP--FAGDPPLS 122 Query: 218 ITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G+A + T+ RADQ L AK+ GR R+ Sbjct: 123 LTLSIGLATSPAGADSPETLFARADQNLLAAKRQGRARL 161 >gi|146311663|ref|YP_001176737.1| diguanylate cyclase [Enterobacter sp. 638] gi|145318539|gb|ABP60686.1| diguanylate cyclase [Enterobacter sp. 638] Length = 351 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 107/195 (54%), Gaps = 13/195 (6%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122 +L +I+I I + L ++ SI L + + +++ +D L + N + +L Sbjct: 158 TLPLIAIYI-IALSVMTDSIAIRLRVKSRELERIAMMDPLLDIANRRLLEKRIEKELKTL 216 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + + +++F DID FK++ND FGH VGD ++A +S+ L + RLGG+EF Sbjct: 217 QQASRESALMFIDIDNFKEVNDRFGHKVGDTLLATVSEILHLATRQTDTPARLGGDEFVI 276 Query: 183 AALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHK-EPISTIIYRA 240 +S +EA ++A+ +I+E + + + + +++ T+S GIA + E ++ + A Sbjct: 277 LLPNTSIEEAHVVAS---RIMEAAAVMDDVAEEAVNCTLSIGIAGATREMENVTDWLQAA 333 Query: 241 DQALYVAKKSGRNRV 255 D ALY AK+ G+NR+ Sbjct: 334 DTALYQAKRGGKNRI 348 >gi|300899213|ref|ZP_07117488.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1] gi|300357169|gb|EFJ73039.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1] Length = 251 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 15/191 (7%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 T+ L+ Y+ ++ +++ + + + D L+ L N A ++ Sbjct: 58 TMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPF 117 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF G+S Sbjct: 118 SVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASL 177 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQAL 244 EAA +A +R + ++ I+ +I I+ S G++ E ++ YR L Sbjct: 178 TEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQFQSLAYR---RL 234 Query: 245 YVAKKSGRNRV 255 Y+AK++GRNRV Sbjct: 235 YLAKQAGRNRV 245 >gi|294010778|ref|YP_003544238.1| putative diguanylate cyclase [Sphingobium japonicum UT26S] gi|292674108|dbj|BAI95626.1| putative diguanylate cyclase [Sphingobium japonicum UT26S] Length = 291 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 19/184 (10%) Query: 87 GSILKELF--------ISYNRISQL---SRIDCLSGLLNHSAFISSLGSY---NEKLSIV 132 G I+ LF + RI +L + D L+G+ N F++ L + + I Sbjct: 100 GDIISRLFHGVRGAAVATRERIDELNIAANEDALTGIANRRGFLAQLDALPLARRRGCIA 159 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FKQ+ND GH GD+V+A + +L + R GGEEFA + E EA Sbjct: 160 IIDLDHFKQVNDMLGHDEGDRVLADFASRLSSQTRRIDIIARWGGEEFAIFYQDAIEDEA 219 Query: 193 AI-LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + LA ++ + P IT SAG+ P+ T I +AD+ALY AKKSG Sbjct: 220 SWSLARIAERMRREPVGMVGDQP---ITFSAGLCA-WRGGPVMTAIGQADEALYRAKKSG 275 Query: 252 RNRV 255 R+R+ Sbjct: 276 RDRI 279 >gi|292489002|ref|YP_003531889.1| protein YhjK [Erwinia amylovora CFBP1430] gi|291554436|emb|CBA21917.1| Protein yhjK [Erwinia amylovora CFBP1430] Length = 537 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+ ++ D L+GLLN + L S + +++ DID FK +ND FGH GD VI Sbjct: 361 RLKSEAQTDPLTGLLNRRGLDAVLDYFLSTGQPFALLALDIDRFKGVNDAFGHAAGDTVI 420 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ QL + + R GGEEF G+ A ++A +RK IE QI+ Sbjct: 421 KTVAQQLGLGARQSDVLCRNGGEEFLMILPGADRDRALMIAERVRKRIEQFQIDAIG--- 477 Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++TIS GI+ + + +AD+ALY AK +GRN VV Sbjct: 478 -NVTISIGISFWSSDSENDMHDAFGQADEALYRAKNTGRNCVV 519 >gi|170690417|ref|ZP_02881584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia graminis C4D1M] gi|170144852|gb|EDT13013.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia graminis C4D1M] Length = 667 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 11/182 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSL---GSYNEKLSIVFFDIDYF 139 SG+ + E ++ R+ QL+ D L+GL N +A +I + + E + ++F D+D F Sbjct: 220 SGTDITEERLAQERLRQLANTDSLTGLPNRNAIQDYIRTAIEEAAPGESVGVLFLDLDNF 279 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K++ND++GH GD++I +S + + + RLGG+EF A + E A Sbjct: 280 KKVNDHYGHVFGDRLIRDVSAAIGMCLNEGDTLARLGGDEFIVLAAKGTAHELEATA--- 336 Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++I+E + S G ++ S GIA H + + ++I AD A+YVAK G+ Sbjct: 337 QRILERMRTPFSLGLVEVYTGCSIGIARYPEHGDNLESLIRSADTAMYVAKDEGKRTHRV 396 Query: 258 FS 259 FS Sbjct: 397 FS 398 >gi|89092549|ref|ZP_01165502.1| GGDEF protein [Oceanospirillum sp. MED92] gi|89083061|gb|EAR62280.1| GGDEF protein [Oceanospirillum sp. MED92] Length = 259 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 13/243 (5%) Query: 22 FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81 + H + +++ F IAT ++I + + L+ I N +L + + I L+ Sbjct: 11 WREHGTRVAWAMGFIGIIATSLWILRVEM--AAYMQSNELDLIAASNFNLYALYL-IWLI 67 Query: 82 LGYISGSILKELFISYN--RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDI 136 GS+L L I+ N +I LS D L+G N + +E ++V DI Sbjct: 68 AICFQGSMLF-LLITRNARKIEALSTKDFLTGAHNRLGLEKVWQRILDTHETFAVVILDI 126 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND GH VGD+++ + + V + R GGEEF G+ ++A A Sbjct: 127 DHFKKINDTHGHDVGDQILKLVVARTHGVLRQEDKLARFGGEEFVIILPGADVEQAVRFA 186 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRN 253 +R IE + +I +T S G+A + + + ++ AD+ALY AK +GRN Sbjct: 187 ERVRVAIETDHFQLRD-VAISVTASFGVAGQELVGDRGDLYELVRVADEALYHAKGNGRN 245 Query: 254 RVV 256 RVV Sbjct: 246 RVV 248 >gi|332526042|ref|ZP_08402180.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2] gi|332109885|gb|EGJ10513.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2] Length = 533 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 7/165 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+++ +R D L+G+ N L + L++ DID FK+IND GH G Sbjct: 362 RLAEQTRTDPLTGVANRRQLDERLRDEYARAARHGHALAVAMIDIDDFKRINDRHGHAAG 421 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ L V R GGEEF + +S +A +R +E + Sbjct: 422 DAVLREVATLLRAHCRDIDLVARYGGEEFCVVFVEASANDALRACEAMRAAVEAHDWSAV 481 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +T+S G+AER + ++ AD LY AK+SG+NRVV Sbjct: 482 APELQRVTLSTGLAEREEADGRQALVAAADARLYEAKRSGKNRVV 526 >gi|310644494|ref|YP_003949253.1| diguanylate cyclase [Paenibacillus polymyxa SC2] gi|309249445|gb|ADO59012.1| Diguanylate cyclase [Paenibacillus polymyxa SC2] Length = 363 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 21/234 (8%) Query: 43 IFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN---- 98 + I N+F I P I ++NL V+ + + + G +L + S N Sbjct: 133 LMIMNVFALGIIFCPLM----INLKNLDDVLHVYPLQFFISMVGGCLLYLIAESINTSNE 188 Query: 99 ---RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148 R+ S D L+ L N SL +E LS++ DID+FK++ND +GH Sbjct: 189 LLLRLEHTSYTDHLTNLSNRRQLEFSLEEQLPQARQRHEHLSVLVLDIDHFKEVNDTYGH 248 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ L L+ V R GGEEF + ++A +AN + + + Sbjct: 249 AAGDAVLRQLGQILMEKCRANDVVTRSGGEEFTVLLPNCAFRQALRIANQILSGVNQHEF 308 Query: 209 NISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259 ++ G + +T+S G+ E +S ++ +AD+ALY AKK+GRNRV + Sbjct: 309 ILADGLVLKVTVSIGVTTFPGTGEDMSGAALLEQADKALYEAKKAGRNRVCSYE 362 >gi|294665593|ref|ZP_06730873.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604642|gb|EFF48013.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1065 Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 8/174 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +L L I + + + D L+GL N F IS L + DID+FK+ Sbjct: 890 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 949 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND++ H GD V+ + L RLGGEEFA ++ EA L +R Sbjct: 950 INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEANALCLRIRA 1009 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +++ N +S + +T SAG+A + S+++ RAD ALY AK +GR+R+ Sbjct: 1010 LF-HARHNWASVEGLQVTFSAGVAALRDDDTGSSLMQRADHALYEAKSAGRDRI 1062 >gi|294626314|ref|ZP_06704916.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599315|gb|EFF43450.1| sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1065 Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 8/174 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +L L I + + + D L+GL N F IS L + DID+FK+ Sbjct: 890 LLTRLRIKSDVFERQAHEDALTGLPNRRHFDEALARDISRARRSARPLVLAILDIDHFKR 949 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND++ H GD V+ + L RLGGEEFA ++ EA L +R Sbjct: 950 INDHYSHASGDAVLHEVGVLLTAAARASDLPARLGGEEFALLLADTTLDEANALCLRIRA 1009 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +++ N +S + +T SAG+A + S+++ RAD ALY AK +GR+R+ Sbjct: 1010 LF-HARHNWASVEGLQVTFSAGVAALRDDDTGSSLMQRADHALYEAKSAGRDRI 1062 >gi|225848060|ref|YP_002728223.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644571|gb|ACN99621.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium azorense Az-Fu1] Length = 638 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 11/173 (6%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 + S ID L+GL N + ++ + + N K ++ D+D+FK+IND +GH VGD V+ ++ Sbjct: 223 KKRSLIDSLTGLYNRN-YLEEIENKNLKDFVVIVADVDFFKKINDTYGHLVGDNVLKTVA 281 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-----ANDLRKIIENSQINISSGP 214 + + V R GGEEF + + E+ L A +RK +EN +I I+ Sbjct: 282 ETIKKNVRENNIVIRYGGEEF--LIILNKERSVDNLNYINVAERIRKAVENLKIKINEND 339 Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 + T+S GI K + + I +AD ALY AK GRNR+ + D EN + Sbjct: 340 YLKTTLSVGIFLDTDKIKTLQEAIKKADVALYKAKTKGRNRIEIY-DEENQSS 391 >gi|117617601|ref|YP_858659.1| GAF domain/GGDEF domain/EAL domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559008|gb|ABK35956.1| gaf domain/GGDEF domain/eal domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 761 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 96/169 (56%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ ++QL L LNH+ ++ Y S++F D+D+FKQ+ND GH GD+++ Sbjct: 333 HDPLTQLPNRALLMNHLNHA--MTHFHRYKSPGFSLIFIDVDHFKQVNDTLGHSAGDQLL 390 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS---S 212 +S +L V RLGG+EF L +S+ E I + L +II S+++ Sbjct: 391 KEMSRRLQTCIRQNDMVARLGGDEF-VIYLDNSKTEEDI-SPVLNRII--SRLSYPFRLM 446 Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + IT+S G+A + IS ++++AD A+Y AK++GR+R+V +S+ Sbjct: 447 GNELGITVSLGVASVSEQTSDISQLLHQADLAMYQAKRNGRSRIVSYSE 495 >gi|327537828|gb|EGF24532.1| diguanylate cyclase and metal dependent phosphohydrolase [Rhodopirellula baltica WH47] Length = 875 Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+G LN AF ++ + LS DID+FK +ND +GH GD+V+ Sbjct: 387 LATRDALTGCLNRRAFFERMEEMLTDYRNAGRPLSCFMVDIDHFKSVNDTYGHHAGDEVL 446 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S L + V R GGEEF G EA + R + N I + S Sbjct: 447 RKVSKVLRDLHEENQVVCRYGGEEFCVMLPGHDLDEAMEQSERTRLAVMN--IRLEDPES 504 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + +T S G++E + + ++I +AD LYVAK+ GRN+ V F Sbjct: 505 LRLTASLGVSELKFGATDVQSLINQADSCLYVAKRGGRNQSVAF 548 >gi|295095931|emb|CBK85021.1| diguanylate cyclase (GGDEF) domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 349 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 5/162 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +R+ L+ D L+ N A + + ++ +++ D+DYFK ND +GH GD Sbjct: 185 SRLDALAHQDPLTKTANRRAMELVLENAVEQGKRFAVLMLDVDYFKLYNDTYGHQAGDAC 244 Query: 155 IAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 +A +++ L TP V R GGEEF E A +A ++ + N+ I + +S Sbjct: 245 LARVAEVLNTSVRTPEDVVSRYGGEEFVVILFDCEESVAEKVAARIQAGLRNAAIPHSAS 304 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 S ++T S GIA II RAD ALY AK++GRNR Sbjct: 305 KVSEYVTASMGIAGYTAGLAGPEIIARADAALYRAKEAGRNR 346 >gi|254820203|ref|ZP_05225204.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium intracellulare ATCC 13950] Length = 597 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 10/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +L+R D L+GL+N + ++ L + + ++F D+D+FK IND +GH Sbjct: 431 QQLERLARFDTLTGLVNRAEALARLDAALRQPRPPETHVGVLFCDVDHFKAINDRWGHGT 490 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209 GD V+A ++ ++ VGR GG+E G S E A +A +R+ + I+ Sbjct: 491 GDVVLATVAARIRASVRREDTVGRTGGDEMLILLPGVRSADELAQIAEKIRRRVAEP-IH 549 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + SG +I T+S G E + + RAD+A+Y AK RN VV Sbjct: 550 V-SGNTIGATLSIGATLALPAESVDAVTARADEAMYRAKSGDRNAVVA 596 >gi|229589847|ref|YP_002871966.1| putative GGDEF domain membrane protein [Pseudomonas fluorescens SBW25] gi|229361713|emb|CAY48594.1| putative GGDEF domain membrane protein [Pseudomonas fluorescens SBW25] Length = 348 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 9/169 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNF 146 L+ + + + +L+ D L+ +LN AF+ S L + + + DID FK ND F Sbjct: 168 LRSVLMVESEFRELAETDYLTSILNRRAFMESFSKLIAAGDTGYFMMLDIDSFKLKNDQF 227 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH VGD+++ ++ L G+ F GR+GGEEF +G A A L + I + Sbjct: 228 GHDVGDRILCAMAACLKSTPGSHSF-GRIGGEEFGVLLVGDDPGLATDYALRLLQAIRS- 285 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S P T SAG+ +S ++ RAD+ LY AK +G++RV Sbjct: 286 ----SVAPPHDYTCSAGMTHFTLGADMSAVLKRADRNLYTAKGNGKDRV 330 >gi|297578955|ref|ZP_06940883.1| GGDEF family protein [Vibrio cholerae RC385] gi|297536549|gb|EFH75382.1| GGDEF family protein [Vibrio cholerae RC385] Length = 443 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G+LN AF L N KL+++FFD+D FK+IND GH VGD V+ Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214 ++ +L F GRLGG+EF Q+ + + N +++E Q + + Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386 Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S+ I +S G+A E+ + P ++ AD+A+Y AK N V C Sbjct: 387 SLEIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430 >gi|53721172|ref|YP_110157.1| hypothetical protein BPSS0136 [Burkholderia pseudomallei K96243] gi|237507299|ref|ZP_04520014.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346] gi|254189596|ref|ZP_04896106.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237] gi|254195500|ref|ZP_04901928.1| diguanylate cyclase [Burkholderia pseudomallei S13] gi|254299655|ref|ZP_04967104.1| diguanylate cyclase [Burkholderia pseudomallei 406e] gi|52211586|emb|CAH37581.1| putative membrane protein [Burkholderia pseudomallei K96243] gi|157809610|gb|EDO86780.1| diguanylate cyclase [Burkholderia pseudomallei 406e] gi|157937274|gb|EDO92944.1| diguanylate cyclase [Burkholderia pseudomallei Pasteur 52237] gi|169652247|gb|EDS84940.1| diguanylate cyclase [Burkholderia pseudomallei S13] gi|234999504|gb|EEP48928.1| diguanylate cyclase [Burkholderia pseudomallei MSHR346] Length = 462 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N L++V D+D+FKQ N Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTPLALVMVDVDHFKQYN 334 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V G FV R GGEEFA G+ E+ AA +A R+ Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 394 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E +I AD ALY AK GRN Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446 >gi|32471539|ref|NP_864532.1| hypothetical protein RB1656 [Rhodopirellula baltica SH 1] gi|32443380|emb|CAD72213.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 875 Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+G LN AF ++ + LS DID+FK +ND +GH GD+V+ Sbjct: 387 LATRDALTGCLNRRAFFERMEEMLTDYRNAGRPLSCFMVDIDHFKSVNDTYGHHAGDEVL 446 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S L + V R GGEEF G EA + R + N I + S Sbjct: 447 RKVSKVLRDLHEENQVVCRYGGEEFCVMLPGHDLDEAMEQSERTRLAVMN--IRLEDPES 504 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + +T S G++E + + ++I +AD LYVAK+ GRN+ V F Sbjct: 505 LRLTASLGVSELKFGATDVQSLINQADSCLYVAKRGGRNQSVAF 548 >gi|298290752|ref|YP_003692691.1| diguanylate cyclase with PAS/PAC sensor [Starkeya novella DSM 506] gi|296927263|gb|ADH88072.1| diguanylate cyclase with PAS/PAC sensor [Starkeya novella DSM 506] Length = 483 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 +EL + R+++LS +D L+ L N F S L G + L+++ D+D FK N Sbjct: 274 RELIEANRRLTELSEMDPLTELPNRRKFDSVLTREIGRTGRHKPSLALMMIDVDGFKHYN 333 Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD+ + +++ L T + R GGEEFA + E +A ++A + + Sbjct: 334 DLYGHIEGDECLRKVAETLRHCARRTGDLITRYGGEEFAVILADTDENDAVMVATSMLRA 393 Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPIST--IIYRADQALYVAKKSGRN 253 + + ++ + P +T+S GIA E + + + ++ AD+ALY AK++GRN Sbjct: 394 VRDLRVAHAGSPYGIVTVSVGIAIHEAANHDTTAPPVLVASADRALYAAKQAGRN 448 >gi|322421600|ref|YP_004200823.1| diguanylate cyclase [Geobacter sp. M18] gi|320127987|gb|ADW15547.1| diguanylate cyclase [Geobacter sp. M18] Length = 428 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 25/218 (11%) Query: 64 ILVENLSLVIISITI-----SLLLGYISGSILKELFISY-NR--------ISQLSRIDCL 109 IL++N ++ +I I SL+ Y+ L + Y NR + +LS D L Sbjct: 191 ILIQNTFSIVATIIIGAFSNSLMENYLRRDFLNANLLEYENRQLQKATLELRRLSISDAL 250 Query: 110 SGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 + L N F L +S+V DID+FK NDN+GH GD + +++++ Sbjct: 251 TNLGNRRHFEVMLDQEWLRATRSESPISLVLLDIDFFKNFNDNYGHQAGDSCLKIVAEEI 310 Query: 163 VVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITI 220 P R GGEEF G +AA +A R+ +E+ +I + S S +T+ Sbjct: 311 GGFARRPADTAARYGGEEFVLLLPGIDLADAATIAETCRQAVESLEIPHCHSAASNVVTV 370 Query: 221 SAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 SAG+A + ++ AD+ALY AK GRNRV+ Sbjct: 371 SAGVASMVPDRDANRGQLVEAADKALYRAKLKGRNRVI 408 >gi|126665288|ref|ZP_01736270.1| hypothetical protein MELB17_21885 [Marinobacter sp. ELB17] gi|126629916|gb|EBA00532.1| hypothetical protein MELB17_21885 [Marinobacter sp. ELB17] Length = 284 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 19/169 (11%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ ID L+G +N A S + + N + ++V D+D+FK +ND +GH VGDKV+ Sbjct: 123 LNTIDALTGAMNRRALESDIAAALSNAERSNVQQALVMLDLDFFKVVNDKYGHDVGDKVL 182 Query: 156 AFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 +LV + + G R GGEEFA G Q+ ++L++ I+N + Sbjct: 183 ----KKLVTIVTNNIRKGDRLYRYGGEEFALLVYGVDSQQQRAFISNLQEAIKN---QLK 235 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + +T S G+A + + AD ALY+AK+ GR+ V FSD Sbjct: 236 TPDAAEVTASFGVAAWVPGTTADSWLKCADTALYLAKERGRDCAV-FSD 283 >gi|71906426|ref|YP_284013.1| GGDEF [Dechloromonas aromatica RCB] gi|71846047|gb|AAZ45543.1| GGDEF protein [Dechloromonas aromatica RCB] Length = 585 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 8/164 (4%) Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 S L R D L+G LN + ++ L + DID FK++ND+ GH GD+ Sbjct: 422 SDLVRHDQLTGTLNRRGLEEIFTKEAARATRHDTALCVALIDIDNFKKLNDSMGHDTGDQ 481 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + L+ V R GGEEF +S +AAI L++ + + + Sbjct: 482 ALIHLATICRETLRPQDTVARYGGEEFIILLPETSLDDAAIALTRLQREL-TKKFFLHGN 540 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + IT SAG+ + + +T+I RAD+A+Y AKK+G+NRV Sbjct: 541 EKVLITFSAGVTQMLPNDTQATVIKRADEAMYQAKKTGKNRVTT 584 >gi|313682795|ref|YP_004060533.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM 16994] gi|313155655|gb|ADR34333.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM 16994] Length = 476 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 +I + + D L+ L N F + + + K SI+ FD+D FK++ND GH Sbjct: 302 KIEKQAITDYLTDLYNRRYFTGRMEEEIAKTKRNKHAKTSIMMFDLDKFKRVNDTMGHLA 361 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI +D + GR+GGEEFA + + AAI A +R+ + N+ + + Sbjct: 362 GDAVIKKFADIIKNNLRVSDIAGRIGGEEFALILPDTDIKSAAITAERIREEVSNTTV-V 420 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRV 255 G IH T+S G+ + + ++ RAD ALY AK+ GRN V Sbjct: 421 YEGKFIHFTVSIGLTALSPLDLSADCVFSRADIALYSAKEHGRNNV 466 >gi|298242665|ref|ZP_06966472.1| diguanylate cyclase and metal dependent phosphohydrolase [Ktedonobacter racemifer DSM 44963] gi|297555719|gb|EFH89583.1| diguanylate cyclase and metal dependent phosphohydrolase [Ktedonobacter racemifer DSM 44963] Length = 944 Score = 82.0 bits (201), Expect = 9e-14, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 34/195 (17%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 +L+E Y+ L+ D ++GL NH A + L + E+ ++ F D+D+FK Sbjct: 532 LLQERDQLYHEQRLLAITDAVTGLSNHRALMIRLDAAFAYHSKQRERYALFFIDLDHFKH 591 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-- 199 +ND +GH VGD ++ + +L V G VGR GGEEF A + DL Sbjct: 592 VNDQYGHLVGDFLLHEVGARLARVVGDGGIVGRYGGEEFV----------ALLWVRDLSH 641 Query: 200 -RKIIENSQINISSGP------------SIHITISAGIAER-CHKEPISTIIYRADQALY 245 R++ E ++ I P + +T+S G+A H + +I +AD+A+Y Sbjct: 642 MREVAERLRMEIMKEPFLWRQERESVPICLRMTVSIGVAVYPLHGTRLQELIAQADRAMY 701 Query: 246 VAKKSGRNRVVCFSD 260 AK SGRN VC D Sbjct: 702 RAKSSGRN-CVCIVD 715 >gi|254228301|ref|ZP_04921728.1| fog: ggdef domain containing protein [Vibrio sp. Ex25] gi|151939107|gb|EDN57938.1| fog: ggdef domain containing protein [Vibrio sp. Ex25] Length = 525 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 8/160 (5%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D ++GLLN LG + N SI+ DID+FK +NDN+GH VGD ++ + + Sbjct: 370 DAMTGLLNRRGLDKVLGLFKQENTAFSILALDIDHFKSVNDNYGHDVGDNLLKEFAQLMK 429 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + R GGEEF + A +A +R +E + +T+S G Sbjct: 430 EQARANDHLCRSGGEEFMMFLEATDVHHAVDVAERIRHNVEKHDFLVVG----KVTVSLG 485 Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ + + PI ++ AD ALY AK++GRNR D + Sbjct: 486 VSHWKGNDMPIEAVMKDADNALYKAKRNGRNRTELGEDAQ 525 >gi|320189897|gb|EFW64549.1| hypothetical protein ECoD_03378 [Escherichia coli O157:H7 str. EC1212] Length = 430 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P H T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLP--HFT 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|323528765|ref|YP_004230917.1| diguanylate cyclase [Burkholderia sp. CCGE1001] gi|323385767|gb|ADX57857.1| diguanylate cyclase [Burkholderia sp. CCGE1001] Length = 506 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 13/177 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 L++ ++ +R+++L++ D L+GL N A L + LS++F D D+FKQ Sbjct: 318 LRDRALAGDRLTELTQTDPLTGLKNRRALDEVLQNEWDRLQRNDSHLSVLFVDADHFKQY 377 Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GDK + L+ ++V V V R GGEEF + A +A +R+ Sbjct: 378 NDQYGHAEGDKALKHLAARIVQRVHRRGDCVARYGGEEFVVVLPDTDAAGAYRVAEGIRE 437 Query: 202 IIENS-QINISSG-PSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +E+S Q +G ++H ++I R + AD ALY AK +GRN Sbjct: 438 QLESSWQTGREAGSAAVHPFTVSIGCATGRRASPSTCEELTKAADIALYEAKSAGRN 494 >gi|54296901|ref|YP_123270.1| hypothetical protein lpp0942 [Legionella pneumophila str. Paris] gi|53750686|emb|CAH12093.1| hypothetical protein lpp0942 [Legionella pneumophila str. Paris] Length = 377 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 19/183 (10%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK------LSIVFFDIDYFKQIN 143 KEL I N + +S D LSGL N F + +N LS+V DID FK IN Sbjct: 194 KELLI--NELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLVSIDIDNFKLIN 251 Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 DN GHP GDKV+ ++D L +F + + RLGG+EFA +E + ++ Sbjct: 252 DNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISICETIKNP 311 Query: 203 IENSQINISSGPS-----IHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNR 254 + +N + + H+T+S GI H E ++I I AD+ALY AKK G+N+ Sbjct: 312 FKTENLNHTYDSNEQLFMSHVTLSIGIV-YIHFESSASIEHAITAADKALYQAKKKGKNQ 370 Query: 255 VVC 257 +V Sbjct: 371 IVV 373 >gi|113968628|ref|YP_732421.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113883312|gb|ABI37364.1| diguanylate cyclase [Shewanella sp. MR-4] Length = 391 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 8/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 ++I L+ D L+GL N A L + NE S++ DID+FKQIND +GH + Sbjct: 220 SKIKILAERDQLTGLWNRHAMQKRLATIHQLWQKNNEPYSVILLDIDHFKQINDQYGHAI 279 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + + V + R GGEEF ++ + A +A+ L +++ + + Sbjct: 280 GDLALLTAARLFSTVLREHDVLCRHGGEEFLVLLPATNARAARTVADKLHRVLRENPLQ- 338 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G I + S G A ++ AD A+Y AK GR+R+ Sbjct: 339 CQGQEIQLYASIGYATIYRGCEPDKLLIEADHAMYQAKSEGRDRI 383 >gi|330446090|ref|ZP_08309742.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490281|dbj|GAA04239.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 395 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 2/128 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L ++ DID+FK IND FGH VGD+VI +S+Q+ R GGEEF + Sbjct: 256 LVVMMCDIDHFKSINDQFGHLVGDQVIVNVSEQIQACVRVNDVAIRYGGEEFLILLPNTP 315 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 A I+A +R + N I I I+IS G++++ + + ++I AD+ALY AK Sbjct: 316 LANAHIVAERIRNAVYN--IPIHHQNMSPISISIGVSQQHKGDNLDSLIREADKALYQAK 373 Query: 249 KSGRNRVV 256 ++GRN VV Sbjct: 374 QNGRNCVV 381 >gi|315180232|gb|ADT87146.1| GGDEF family protein [Vibrio furnissii NCTC 11218] Length = 380 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 16/213 (7%) Query: 48 IFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107 +FLF+ + Y L ++V L I+S+ L L + E+ Y+R D Sbjct: 177 MFLFHQFHSKVYFLSGVVVGQNLLTIVSLGAMLSLFFYD-----EIEWHYHRAIH----D 227 Query: 108 CLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 L+G+ N F+ L +I D+D+FKQ+ND+FGH VGD+ + ++ + Sbjct: 228 ELTGIFNRRYFMEQAERRLKQAKAHYTIAIIDVDHFKQVNDSFGHDVGDRALEAIAQLMH 287 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 F + V R GGEEF GS E E + + + I G + +T+S G Sbjct: 288 RQFRHDL-VARYGGEEFVVLLAGSVE-ETRFKLERFNHEVAHHAMEI-YGHHVDLTVSIG 344 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +A ++ + + +AD ALY AK GRNR+V Sbjct: 345 MASVTSEQHLHQALKQADIALYDAKGKGRNRLV 377 >gi|309782496|ref|ZP_07677220.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA] gi|308918833|gb|EFP64506.1| diguanylate cyclase [Ralstonia sp. 5_7_47FAA] Length = 397 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 17/179 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QL+ ID L+G+L AF++ + + LSI ID FK +ND FGH V Sbjct: 214 RRMDQLANIDELTGVLMRRAFMARASVLLHDAVASGKPLSIAVLAIDQFKAVNDGFGHAV 273 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ ++ + +GRLGGEEFA + + + AA + ++LR +E+S Sbjct: 274 GDRILKHVTSVVSTRLKPGDLIGRLGGEEFAIVVVDADKAAAAAVMDELRLAVEHSPRQ- 332 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS-----DIENN 264 + T SAG+ + ++ + RAD ALY+AK+ GRNRV+ S D+E + Sbjct: 333 ----GVRCTFSAGVECVMPGDTLAATLARADAALYLAKEKGRNRVIIASKAHEGDVETH 387 >gi|293607687|ref|ZP_06690018.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553] gi|292813825|gb|EFF72975.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553] Length = 430 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 26/177 (14%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL A L ++ D+D+FK ND GH VGD+V+ ++ QL V Sbjct: 248 DELTGLPGRRALNERLQRMGRVYTLAMADVDHFKAFNDTHGHDVGDQVLRMVASQLRRVP 307 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS----------- 215 G R GGEEF G + E+ +R+ IE Q+ + P+ Sbjct: 308 GGGQAY-RYGGEEFTLVFPGKTAAESLPHLETVRRAIEAYQMRLRDKPARPKADQLGQRR 366 Query: 216 -----------IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +T+S G+AER + P +I ADQALY AK GRN+V + Sbjct: 367 RGVRGGRNSRPLRVTVSIGLAERGDALRAP-DAVIKAADQALYKAKDGGRNQVCAYG 422 >gi|227325974|ref|ZP_03829998.1| hypothetical protein PcarcW_01091 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 610 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+GL N S+F + + +K + DID FK IND +GH GD V+ Sbjct: 452 DFLTGLPNRSSFFEQASAFFLLKQQSQHTDKGCLAIIDIDLFKNINDQYGHLAGDAVLKE 511 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L+ + + V RLGGEEF S Q A + +R+ IE + ++H Sbjct: 512 LAMLMRMSLRQEDLVARLGGEEFIILLKEVSYQTAVVTIERIRQAIEQHTLEYDR-QNLH 570 Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 TISAGIA R + I AD+ LY AK+ GRN Sbjct: 571 FTISAGIAAYRSDLASVEEWIQLADENLYAAKRQGRN 607 >gi|226228481|ref|YP_002762587.1| hypothetical membrane protein [Gemmatimonas aurantiaca T-27] gi|226091672|dbj|BAH40117.1| hypothetical membrane protein [Gemmatimonas aurantiaca T-27] Length = 422 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 18/179 (10%) Query: 96 SYNRI-SQLSRI---DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 +YNR+ QL+ I D LSG N F I+ + ++++ D+D+FK +ND Sbjct: 229 AYNRMRGQLATIVLTDPLSGCFNRRGFEQQYRREIARAARAHTDIALLAIDLDHFKLVND 288 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH VGD+VIA + L T V R GGEEFA A +S A LA +I+E Sbjct: 289 THGHLVGDQVIAEAGELLRASARTQDVVARTGGEEFAILAPDTSLDGAQHLA---LRIVE 345 Query: 205 NSQINISSGPS--IHITISAG-IAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFS 259 + + P + +T+S G +++ + I+ + R+D+ALY AK+SGRNR V +S Sbjct: 346 AFRRRTFAEPQARVSVTVSIGVVSDSVRDDGIAEALRARSDEALYAAKRSGRNRAVLWS 404 >gi|257058834|ref|YP_003136722.1| diguanylate cyclase [Cyanothece sp. PCC 8802] gi|256589000|gb|ACU99886.1| diguanylate cyclase [Cyanothece sp. PCC 8802] Length = 494 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 81/169 (47%), Gaps = 17/169 (10%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL E+ L I+ D+D+FK +ND FGH GD+V+ L Sbjct: 328 DALTGLYNRRYLEESLKKELERAKRKERSLGIIMIDVDHFKNVNDTFGHDKGDQVLKKLG 387 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEE +S + A LR+ ++N +++ +T Sbjct: 388 GFLQRHIRGSDIACRYGGEELTLILPEASLENTRQRAEQLRQAVKNLDLDLCDHT---LT 444 Query: 220 ISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFS--DIEN 263 IS GIA C H ++ ADQALY AK+ GR+RV+C DIE+ Sbjct: 445 ISVGIA--CFPEHGYSGKALLKTADQALYQAKQQGRDRVICPPILDIED 491 >gi|15641382|ref|NP_231014.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121588014|ref|ZP_01677766.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121728527|ref|ZP_01681550.1| GGDEF family protein [Vibrio cholerae V52] gi|147675423|ref|YP_001216929.1| GGDEF family protein [Vibrio cholerae O395] gi|153819349|ref|ZP_01972016.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|153821309|ref|ZP_01973976.1| GGDEF family protein [Vibrio cholerae B33] gi|153825250|ref|ZP_01977917.1| GGDEF family protein [Vibrio cholerae MZO-2] gi|153828801|ref|ZP_01981468.1| GGDEF family protein [Vibrio cholerae 623-39] gi|227081541|ref|YP_002810092.1| GGDEF family protein [Vibrio cholerae M66-2] gi|229505049|ref|ZP_04394559.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229511281|ref|ZP_04400760.1| GGDEF family protein [Vibrio cholerae B33] gi|229518399|ref|ZP_04407843.1| GGDEF family protein [Vibrio cholerae RC9] gi|229608053|ref|YP_002878701.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254286178|ref|ZP_04961138.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|254848492|ref|ZP_05237842.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255745757|ref|ZP_05419705.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262158965|ref|ZP_06030077.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|262169324|ref|ZP_06037016.1| GGDEF family protein [Vibrio cholerae RC27] gi|298498546|ref|ZP_07008353.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|9655864|gb|AAF94528.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547755|gb|EAX57846.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121629191|gb|EAX61631.1| GGDEF family protein [Vibrio cholerae V52] gi|126510094|gb|EAZ72688.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|126521127|gb|EAZ78350.1| GGDEF family protein [Vibrio cholerae B33] gi|146317306|gb|ABQ21845.1| GGDEF family protein [Vibrio cholerae O395] gi|148875754|gb|EDL73889.1| GGDEF family protein [Vibrio cholerae 623-39] gi|149741078|gb|EDM55137.1| GGDEF family protein [Vibrio cholerae MZO-2] gi|150423847|gb|EDN15788.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|227009429|gb|ACP05641.1| GGDEF family protein [Vibrio cholerae M66-2] gi|227013287|gb|ACP09497.1| GGDEF family protein [Vibrio cholerae O395] gi|229345114|gb|EEO10088.1| GGDEF family protein [Vibrio cholerae RC9] gi|229351246|gb|EEO16187.1| GGDEF family protein [Vibrio cholerae B33] gi|229357272|gb|EEO22189.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229370708|gb|ACQ61131.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254844197|gb|EET22611.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255736832|gb|EET92229.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262022137|gb|EEY40846.1| GGDEF family protein [Vibrio cholerae RC27] gi|262029150|gb|EEY47802.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|297542879|gb|EFH78929.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 443 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G+LN AF L N KL+++FFD+D FK+IND GH VGD V+ Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214 ++ +L F GRLGG+EF Q+ + + N +++E Q + + Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386 Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S+ I +S G+A E+ + P ++ AD+A+Y AK N V C Sbjct: 387 SLEIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430 >gi|37676725|ref|NP_937121.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|37201268|dbj|BAC97091.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 457 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 15/171 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 +EL ++ + QLS+ D L+ + N F+ L + + + +S++ FDID FK+IND++G Sbjct: 287 RELQLANENLLQLSQQDYLTQISNRRHFMEQLKNLSPEAVSVSVLIFDIDDFKRINDSYG 346 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD VI ++ Q+ + R+GGEEFA A G + +A LA + ++E Sbjct: 347 HATGDLVIQNVATQVDETLPSDTLYARIGGEEFAIVAFGLAFTDAQALAKKVCHVVEKLT 406 Query: 208 I-NISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNR 254 N+ G +TIS G C P S + AD+ +Y AK+ G+N+ Sbjct: 407 FNNVPEG----VTISLG----CAYYPFSNGHIDLGMADKLMYQAKRLGKNQ 449 >gi|327189552|gb|EGE56705.1| putative sensory box/GGDEF family protein (nitrogen fixation positive activator protein-like protein) [Rhizobium etli CNPAF512] Length = 737 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 108/208 (51%), Gaps = 22/208 (10%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA------ 117 +++E L LV + + L +G+++G LK N + + D LSGL N Sbjct: 266 MVIEALGLVGMFFMVLLAIGWLAGRRLK---AEENSAREEALRDRLSGLSNRDGLGLAVD 322 Query: 118 -FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 F++ + +++ D+D FK++ND++GH GD++I ++ L V+ + R+G Sbjct: 323 RFVAEARQSKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRAVAAGLQVLIPQGAVLARIG 382 Query: 177 GEEFAAAALGSSEQEAAILAND--LRKIIENSQIN---ISSGPSIHITIS-AGIAERCHK 230 G+EFA A L E AA+ ++ L ++E +I + G SI I +S AG +R Sbjct: 383 GDEFAIAFLSDGENAAALQLSEQILDFMVEPLEIGRRVVVVGASIGIAMSPAGAIDR--- 439 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ R+D A+Y AK++GR R+ + Sbjct: 440 ---EELVRRSDLAMYKAKEAGRARMTLY 464 >gi|322434247|ref|YP_004216459.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9] gi|321161974|gb|ADW67679.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9] Length = 394 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 24/182 (13%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + ++ D L+ L N AF + S S++ D+D+FK+IND FGH GD Sbjct: 215 LEHIASTDPLTRLYNRRAFRYWCDKEVKRSQSRGRLFSVLMIDLDHFKKINDRFGHLAGD 274 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + +++ +GR GGEEF G+S A ++A+ LR + ++I + + Sbjct: 275 GALCAAVEKMQDSIRGIDILGRWGGEEFILLLPGASPDSALVIADRLR--LNVAKIMVGA 332 Query: 213 GPSIH--------------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +H +T+S G+ R + + +++ RAD+ LY AK +GRNR+V Sbjct: 333 TGELHRLEEILGDPNDMMRVTVSLGVTTYRGKGDTVESMLKRADEGLYEAKATGRNRIVA 392 Query: 258 FS 259 + Sbjct: 393 MT 394 >gi|217422909|ref|ZP_03454411.1| diguanylate cyclase [Burkholderia pseudomallei 576] gi|217393817|gb|EEC33837.1| diguanylate cyclase [Burkholderia pseudomallei 576] Length = 462 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N L++V D+D+FKQ N Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNAPLALVMVDVDHFKQYN 334 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V G FV R GGEEFA G+ E+ AA +A R+ Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 394 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E +I AD ALY AK GRN Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446 >gi|194365042|ref|YP_002027652.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] gi|194347846|gb|ACF50969.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] Length = 512 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 86/183 (46%), Gaps = 20/183 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 E R++ + D L+G+LN + L G LS+ F D+D FK+IND Sbjct: 317 EFEARAKRLADQAHRDALTGVLNRRQLEAVLEQEFLRAGRQGWPLSVAFIDLDDFKKIND 376 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILANDL 199 GH GD+V+ + +L V R GGEEF A +SE A +LAN Sbjct: 377 AHGHLTGDEVLRAFAGKLQGQLRNSDTVARFGGEEFVALLPNTSESVALDVIRRVLAN-- 434 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256 I+ I SGP + +T SAG+A + E + ++ AD LY +K GRNRV+ Sbjct: 435 --IVATPMAEIESGP-LFVTFSAGVATQGGYERFADVQDLLRAADDVLYRSKNLGRNRVI 491 Query: 257 CFS 259 S Sbjct: 492 ARS 494 >gi|71280078|ref|YP_271426.1| sensory box putative digualylate cyclase [Colwellia psychrerythraea 34H] gi|71145818|gb|AAZ26291.1| sensory box putative digualylate cyclase [Colwellia psychrerythraea 34H] Length = 292 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 84/168 (50%), Gaps = 11/168 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ Q + +D L+ + N A+ I SL Y SI+ DID FK INDNFGH VG Sbjct: 127 QLKQQTLLDELTQIKNRKAYNLKIKSLLAVFERYQTPFSIISIDIDDFKNINDNFGHDVG 186 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ + + R+GGEEF + ++ +A LA LRKI+ + I Sbjct: 187 DTVLRSFGALIEKNIRETDHLFRIGGEEFVILSESKTKVDAIQLAEKLRKIVAFNTI--- 243 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I+ITIS GI E + ++I R D LY AK G+N+V S Sbjct: 244 -LTDINITISLGICEVTTGDGPNSIAKRVDNLLYEAKSHGKNKVTYHS 290 >gi|24372162|ref|NP_716204.1| sensory box/GGDEF family protein [Shewanella oneidensis MR-1] gi|24346060|gb|AAN53649.1|AE015503_10 sensory box/GGDEF family protein [Shewanella oneidensis MR-1] Length = 324 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 9/173 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L + ++ +LS+ D L+ L N + L Y+ S+V DID+FK IND Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQQCLEHEYDLYARYSGIASLVMIDIDHFKNIND 203 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GDKVI ++ L GR GGEEFA + +A LR+ I Sbjct: 204 TYGHLAGDKVIQHIAHILSHSLRETDCAGRYGGEEFAVVMPSTCGADALNFTERLREKIA 263 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S + + G I +T+S G+ E H S+ I +D+ALY AK+ GRN V Sbjct: 264 SSTV-VYEGLKIKVTVSLGVCELGKHISSSSSWISCSDKALYEAKQKGRNCTV 315 >gi|332307907|ref|YP_004435758.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175236|gb|AEE24490.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 496 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 18/207 (8%) Query: 58 FYGL-EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 +GL EY+L+ +++I++ + G + L ++ + D L+ + Sbjct: 277 LFGLNEYVLIYQFAIIIVAANA------LFGIAVPALVADNEKLQAIITTDALTQAASRQ 330 Query: 117 AFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F+ S N++ LS++ FD+D FK++ND FGH GDK + + + Sbjct: 331 HFMQQAERAVNRSLNDEMPLSLIMFDMDNFKKVNDTFGHSAGDKALQSVCQVAQLSLRPT 390 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 +GR GG+EF A S+ EA +A R + ++ ++ G IH S G+A+ Sbjct: 391 DLLGRFGGDEFVALLPDSTNLEAQQIAQ--RILTSVNKAEVAPGQPIH--CSFGVAQLSQ 446 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256 + + + AD+ALY AK+ GRN +V Sbjct: 447 DQNFTELFNAADKALYKAKQQGRNTIV 473 >gi|327484040|gb|AEA78447.1| GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 443 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G+LN AF L N KL+++FFD+D FK+IND GH VGD V+ Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214 ++ +L F GRLGG+EF Q+ + + N +++E Q + + Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386 Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S+ I +S G+A E+ + P ++ AD+A+Y AK N V C Sbjct: 387 SLEIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430 >gi|324005885|gb|EGB75104.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2] Length = 302 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 10/197 (5%) Query: 69 LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122 L+L+ T LLL Y+ ++ +++ + + + D L+ L N A Sbjct: 100 LTLLWALFTSMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKACPLAK 159 Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF Sbjct: 160 LCHTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEF 219 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIY 238 G++ +AA +A +R + ++ I+ +I I+ S G+ +E + Sbjct: 220 CVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQS 279 Query: 239 RADQALYVAKKSGRNRV 255 AD+ LY+AK++GRNRV Sbjct: 280 LADRRLYLAKQAGRNRV 296 >gi|297616706|ref|YP_003701865.1| diguanylate cyclase [Syntrophothermus lipocalidus DSM 12680] gi|297144543|gb|ADI01300.1| diguanylate cyclase [Syntrophothermus lipocalidus DSM 12680] Length = 402 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 12/170 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNF 146 EL + R++ + D L+G LN A + + S + ++ FDID FKQ+ND Sbjct: 229 ELERAKQRLADKASTDALTGALNKKALLQEIDSLLVARDRDVFCLLMFDIDEFKQLNDKL 288 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD + LS + GR GG+EF + +A ++A +R+ +EN Sbjct: 289 GHVAGDMALKRLSRIVKSSIREGDIFGRYGGDEFIVVLPHTPLSDARLIAERIRQRVEND 348 Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +GP IT+S G+A E ++ AD LY++K GRNRV Sbjct: 349 K----TGPP--ITLSMGLAAYPLDGETGVALVKAADDGLYLSKSKGRNRV 392 >gi|260774955|ref|ZP_05883855.1| hypothetical protein VIC_000327 [Vibrio coralliilyticus ATCC BAA-450] gi|260609045|gb|EEX35204.1| hypothetical protein VIC_000327 [Vibrio coralliilyticus ATCC BAA-450] Length = 545 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + + LS++ D+D+FK+ NDNFGH GD V+ +S Sbjct: 365 DPLTGLFNRRFFEQKLTEHAMNSATSEQPLSLLMLDLDHFKRFNDNFGHDAGDFVLKEIS 424 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L G RLGGEE A S+ ++A AN L + + + + + Sbjct: 425 ALLKRSVGDDEIACRLGGEELAVLLPQSNMKQATEFANTLCEAVRSLHLEHKGLSLGQLG 484 Query: 220 ISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S G++ + +P + +++ ADQALY+AK GR+RVV + + Sbjct: 485 VSIGVS--TYPKPSSDMESLVKMADQALYMAKDLGRSRVVNYDE 526 >gi|182625672|ref|ZP_02953441.1| GGDEF domain protein [Clostridium perfringens D str. JGS1721] gi|177909074|gb|EDT71549.1| GGDEF domain protein [Clostridium perfringens D str. JGS1721] Length = 299 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 4/129 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188 +++ DID FK++ND +GH VGDK++ + +L + ++GR GGEEF ++ Sbjct: 172 TVIMADIDSFKKVNDTYGHLVGDKILRDFAKELNNNIRENSDWIGRYGGEEFIIVLNNAN 231 Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247 + +A LRKIIE +++ G S+ IT S G+ E KE I AD+ LY+A Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289 Query: 248 KKSGRNRVV 256 K +GRN+ V Sbjct: 290 KMTGRNKTV 298 >gi|152997842|ref|YP_001342677.1| PAS/PAC sensor-containing diguanylate cyclase [Marinomonas sp. MWYL1] gi|150838766|gb|ABR72742.1| diguanylate cyclase with PAS/PAC sensor [Marinomonas sp. MWYL1] Length = 407 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ + +R D L+G N F ++ + +KL ++ DID+FK+IND FGH Sbjct: 239 RKLDKATRTDPLTGTSNRREFNLIIHDELNLQKQFEKKLCLMTLDIDFFKKINDKFGHSG 298 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + +++ L + + R+GGEEF + Q A A L K + I Sbjct: 299 GDQALQLIAEWLQKKLRSTDTLFRVGGEEFYILMRDTDIQNALKTAERLCKGMATHTFLI 358 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + S+HIT+SAG+ E + + + D+ALY AK GRN VC Sbjct: 359 NQ-QSVHITLSAGVIELAPTTDLESALDMVDKALYEAKSDGRN-CVC 403 >gi|34580736|ref|ZP_00142216.1| regulatory components of sensory transduction system [Rickettsia sibirica 246] gi|28262121|gb|EAA25625.1| regulatory components of sensory transduction system [Rickettsia sibirica 246] Length = 450 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 75/158 (47%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F I + KL ++ DID FK +ND +GH GDKV+ +S Sbjct: 291 DGLTGLFNRRYFDIHLKQIIEKTNKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVS 350 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218 L + R GGEEF +A A +R IE +I + Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMNFHIEDQIEPLKT 410 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TIS G+ + E I + I RAD+A+Y AK +G+N+VV Sbjct: 411 TISIGVTKYKKAESIESFIERADKAMYEAKTTGKNKVV 448 >gi|297578706|ref|ZP_06940634.1| GGDEF family protein [Vibrio cholerae RC385] gi|297536300|gb|EFH75133.1| GGDEF family protein [Vibrio cholerae RC385] Length = 489 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +L+ D ++GLLN S L +++ L+I DID FKQIND +GH +GD+VI ++ Sbjct: 332 EELAARDPMTGLLNRRGMESFLKGKRHSQYLAIAVLDIDDFKQINDAYGHDMGDRVICYI 391 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +Q+ + V R GGEEF EQ I+ + +S + + G Sbjct: 392 GEQIENHIRSSDAVARFGGEEFVIYVTAKEKEQITRIMQRIFDAVCRDSPLILEPG---- 447 Query: 218 ITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S GI E + AD+ LYVAK SG+N++V Sbjct: 448 FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAKTSGKNQLV 488 >gi|298292200|ref|YP_003694139.1| diguanylate cyclase [Starkeya novella DSM 506] gi|296928711|gb|ADH89520.1| diguanylate cyclase [Starkeya novella DSM 506] Length = 389 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 19/203 (9%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN- 126 N + +++I +++ L Y +++E +R + +R D L+GLLN F S L N Sbjct: 187 NAVVGLVAIGVAIFLNYALVLMVRERAELLHRSA--ARRDELTGLLNRRGF-SELALANC 243 Query: 127 ---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 ++++ DID+FKQ+ND FGH GD+V+ + L + VGR+GG+EFAA Sbjct: 244 ETAGPVALIILDIDHFKQVNDRFGHATGDRVLEAFAHVLRINLRQADIVGRIGGDEFAAL 303 Query: 184 ALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEP---------I 233 G+SE A A +R+ + + G + + S G+A C P + Sbjct: 304 LPGASEAAAGQAAERIREAFQAGVGQMRPDGARVECSSSIGVA--CGDFPDAPSDGAARL 361 Query: 234 STIIYRADQALYVAKKSGRNRVV 256 ++ AD+ALY AK +GRNRVV Sbjct: 362 EALLAWADRALYEAKSAGRNRVV 384 >gi|292900137|ref|YP_003539506.1| signal transduction protein [Erwinia amylovora ATCC 49946] gi|291199985|emb|CBJ47109.1| putative signal transduction protein [Erwinia amylovora ATCC 49946] Length = 535 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+ ++ D L+GLLN + L S + +++ DID FK +ND FGH GD VI Sbjct: 359 RLKSEAQTDPLTGLLNRRGLDAVLDYFLSTGQPFALLALDIDRFKGVNDAFGHAAGDTVI 418 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ QL + + R GGEEF G+ A ++A +RK IE QI+ Sbjct: 419 KTVAQQLGLGARQSDVLCRNGGEEFLMILPGADRDRALMIAERVRKRIEQFQIDAIG--- 475 Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++TIS GI+ + + +AD+ALY AK +GRN VV Sbjct: 476 -NVTISIGISFWSSDSENDMHDAFGQADEALYRAKNTGRNCVV 517 >gi|291006137|ref|ZP_06564110.1| diguanylate cyclase [Saccharopolyspora erythraea NRRL 2338] Length = 544 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 10/171 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL F + L L++ DID+FK IND +GHPVGD+V Sbjct: 170 RLAVTDVLTGLCTRRYFEAHLPQAMARCERAGRPLAVFIIDIDHFKSINDRYGHPVGDRV 229 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + +L + R GGEEFA AL +A LR + + +S+ Sbjct: 230 LVETATRLRRAVREGDVLARYGGEEFALLALDVDRAAVTGMAERLRAAVGGMPVELSTAD 289 Query: 215 SIHITIS--AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +T+S A + + P +I AD+ALY AK GR+RV ++E+ Sbjct: 290 RAWVTVSVGAAGGDGVGRSP-QQLIADADRALYAAKAMGRDRVALGDELEH 339 >gi|238894827|ref|YP_002919561.1| hypothetical protein KP1_2841 [Klebsiella pneumoniae NTUH-K2044] gi|238547143|dbj|BAH63494.1| hypothetical protein KP1_2841 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 459 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 74/153 (48%), Gaps = 10/153 (6%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GLLN F + + ++ DID+FK IND GH GD+V+ LS L Sbjct: 297 DPLTGLLNRREFHHLVEAPTFIPRGYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILE 356 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + R GGEEF S A ILA +R+ + Q ++ +T+S G Sbjct: 357 TSVDREDKIYRWGGEEFLLFLPHSPIGRALILAEGIRQAVSEYQ-------TLSVTVSIG 409 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +AE E + + R D+ALY AK GRNRV Sbjct: 410 VAEHHDGETVDQLFSRVDKALYAAKNDGRNRVT 442 >gi|237808108|ref|YP_002892548.1| diguanylate cyclase with PAS/PAC sensor [Tolumonas auensis DSM 9187] gi|237500369|gb|ACQ92962.1| diguanylate cyclase with PAS/PAC sensor [Tolumonas auensis DSM 9187] Length = 423 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 14/168 (8%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+ L N IS L+I D+D+FK +ND +GH G Sbjct: 256 RLRTLAERDHLTRLFNRRKIMDCLETEISRADRQASALTIAMLDLDHFKNVNDKWGHAAG 315 Query: 152 D---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 D K A L Q + ++GR+GGEEF + + EA + + ++++ Sbjct: 316 DLVLKEFALLCQQQIRKLD---YLGRIGGEEFLLIMSDTDQTEAMFVLERIISVVQHHCF 372 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 N I+IT SAG+AE + I + +AD+ALY AK GRN++V Sbjct: 373 NWKQT-EINITCSAGLAEWHPLQNIQQLYTQADKALYEAKNHGRNQIV 419 >gi|149924030|ref|ZP_01912413.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1] gi|149815113|gb|EDM74666.1| FHA domain/GGDEF domain protein [Plesiocystis pacifica SIR-1] Length = 294 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 24/179 (13%) Query: 94 FISYNRIS--------QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138 FIS N I L+ D L+G+ N +F S+L + +L++ FDID+ Sbjct: 116 FISRNNIEAAFHEHVYSLTHFDSLTGVHNRPSFDSALANSVAKAARAQSQLALFLFDIDH 175 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAI 194 FK+ ND +GH GD V++ Q+ + G M F R GGEEFA G Sbjct: 176 FKRCNDTYGHRAGDYVLS----QVGRLVGEHMRAGDFAARYGGEEFALILRGLVPPAPTR 231 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A+ +R ++E + G I +TIS G+AE + ++ ADQ LY AK++GRN Sbjct: 232 FADHIRNLVEVQRFEF-EGKHIPVTISGGVAEWEPGMVGAQLVELADQRLYRAKQAGRN 289 >gi|134280698|ref|ZP_01767408.1| diguanylate cyclase [Burkholderia pseudomallei 305] gi|134247720|gb|EBA47804.1| diguanylate cyclase [Burkholderia pseudomallei 305] Length = 462 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N L++V D+D+FKQ N Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFDRAFHYARRHNTPLALVMVDVDHFKQYN 334 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V G FV R GGEEFA G+ E+ AA +A R+ Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAAAIAERARQA 394 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E +I AD ALY AK GRN Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446 >gi|260550760|ref|ZP_05824968.1| WspR [Acinetobacter sp. RUH2624] gi|260406266|gb|EEW99750.1| WspR [Acinetobacter sp. RUH2624] Length = 420 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 11/239 (4%) Query: 28 MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87 M+Y + +I + + + N+ YI L IL ++S ++IS SL L Sbjct: 171 MLYVGLSAAILVFVFLNLLNVNCDYIALGRALFGTCILGFSISTMLISRERSLFLNNQLA 230 Query: 88 SILKELF-ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFFDIDYF 139 I +++ I + + LS+ D L+ + N F + EK L+++F DID+F Sbjct: 231 EINEQILRIEASELLHLSQQDALTQISNRRTFDEMFDFFYYRANQEKRPLAVLFIDIDFF 290 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K ND +GH +GDKVI+ ++ + FV R GGEEF + Q A +A ++ Sbjct: 291 KNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPETPAQGAYAVAANI 350 Query: 200 RKIIENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255 K IE I + +S S ++TIS G K +I+ ADQALY AK+ GRN++ Sbjct: 351 YKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMGQDKLIHAADQALYRAKQLGRNQI 409 >gi|241204330|ref|YP_002975426.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858220|gb|ACS55887.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 423 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 11/173 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-ISSLGSYNEKL------SIVFFDIDYFKQINDNFGHP 149 YN + + + D L+G+ + + + + E L +++ D D+FK +ND +GH Sbjct: 250 YNDLLERTGRDMLTGVYDRTRMEVEAPLMLREALRQGLYATVLILDADHFKDVNDGYGHL 309 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ ++ +L + V R GGEEF A G+ +E +LA LR I S Sbjct: 310 QGDEVLKAIAARLGTTLRSSDRVFRFGGEEFVAVCPGADHEEGLLLAERLRWTIATSVKT 369 Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261 P IT+S G+A + ++ AD LYVAKKSGRN VV S + Sbjct: 370 PDDRP---ITVSIGVATADEDGVDFTAVLTAADGRLYVAKKSGRNCVVGRSGV 419 >gi|217975084|ref|YP_002359835.1| GAF sensor-containing diguanylate cyclase [Shewanella baltica OS223] gi|217500219|gb|ACK48412.1| diguanylate cyclase with GAF sensor [Shewanella baltica OS223] Length = 594 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 10/177 (5%) Query: 89 ILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIND 144 +L++ +S N ++ +++ D L+GL N F L + + + D+DYFK ND Sbjct: 413 VLQQALVSANTQLKEMAETDELTGLANRRPFTERLETVLQADTPAGLFMLDVDYFKSYND 472 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 +GH GD V+ ++D L P + R+GGEEFA + + +A L + Sbjct: 473 TYGHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQLCYL 532 Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E I + P +TIS G ++ ++ ++ RAD LY AK GRNRV Sbjct: 533 VEQLNIPHQASPLAVVTISIGSVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRV 589 >gi|218294641|ref|ZP_03495495.1| diguanylate cyclase [Thermus aquaticus Y51MC23] gi|218244549|gb|EED11073.1| diguanylate cyclase [Thermus aquaticus Y51MC23] Length = 536 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 13/167 (7%) Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 S L+ D L+GLLN ++ Y +S+V DID FK +ND +GHPVGD+ Sbjct: 372 SALALTDPLTGLLNRRGLELELPKLVALARRYGTPVSVVMMDIDRFKWVNDTYGHPVGDE 431 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ L + R GGEEF G+ Q A + +R +I Sbjct: 432 VLRRLGQIVKASVRREDLAVRYGGEEFLLFLYGADRQAAKEVVERIRSRFRTEKIPPIPY 491 Query: 214 PSIHITISAGIA--ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257 P +T+SAGIA E E + I +AD AL AK++GR+RV Sbjct: 492 P---LTLSAGIAGGEVPEGEAVVEEWILKADYALLRAKETGRDRVTL 535 >gi|158320221|ref|YP_001512728.1| diguanylate cyclase [Alkaliphilus oremlandii OhILAs] gi|158140420|gb|ABW18732.1| diguanylate cyclase [Alkaliphilus oremlandii OhILAs] Length = 1822 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 19/179 (10%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 + ++ ++ +S ID ++G F I N+ LSI+ DID+FK +ND Sbjct: 1467 ILLTNRNLAMISNIDRMTGAYTRKYFEQIFDEEIEQAKESNQPLSIIMLDIDHFKNVNDI 1526 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD ++ + + + VGR GGEEF +S +A +A +R +++ Sbjct: 1527 YGHQKGDNILTEVGRIIKSNIRSTDHVGRYGGEEFVIILPNTSNMDAFHVAEKIRLKVQS 1586 Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRVVCFS 259 + + G + +TIS GI+ PI + II +ADQALY AK++GRNR V + Sbjct: 1587 TNL---LGKAEVLTISCGISTF----PIDSNKQLQIIEKADQALYHAKENGRNRSVRWD 1638 >gi|126444744|ref|YP_001061282.1| diguanylate cyclase [Burkholderia pseudomallei 668] gi|126224235|gb|ABN87740.1| diguanylate cyclase [Burkholderia pseudomallei 668] Length = 462 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N L++V D+D+FKQ N Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNAPLALVMVDVDHFKQYN 334 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V G FV R GGEEFA G+ E+ AA +A R+ Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 394 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E +I AD ALY AK GRN Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446 >gi|24373752|ref|NP_717795.1| GGDEF family protein [Shewanella oneidensis MR-1] gi|24348133|gb|AAN55239.1|AE015662_1 GGDEF family protein [Shewanella oneidensis MR-1] Length = 341 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 6/156 (3%) Query: 107 DCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G LN AF + + E ++ DID+FK NDN+GH +GD+V+ ++ +L Sbjct: 182 DALTGCLNRRAFDADIAGMIAQAPEGTCLILVDIDHFKAFNDNYGHQLGDQVLKAVAKRL 241 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITI 220 + R GGEEFA S + LA +R+ +E + + +IT Sbjct: 242 QEACRDGSKLYRFGGEEFAIIVPKSQLRITRQLAEAMRRGLEKLCLKDRRKDQLVDNITA 301 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+A+ ++ + +I + D+ LY AK+ GRNRV+ Sbjct: 302 SFGVAQWQERQSVVQLIEKTDKLLYEAKRLGRNRVM 337 >gi|24375904|ref|NP_719947.1| GGDEF family protein [Shewanella oneidensis MR-1] gi|24350880|gb|AAN57391.1|AE015875_7 GGDEF family protein [Shewanella oneidensis MR-1] Length = 435 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 26/205 (12%) Query: 66 VENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 VE + ++ + ++LL+ + G+ + L ++I L+ D L+GL N A L Sbjct: 235 VEAIPMLWFYVFLALLINIVMIGNAMTRLV---SKIRVLAEKDQLTGLWNRRAMQKRLSH 291 Query: 125 YNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVG 173 +++ S++ D+D+FK IND++GH VGD IA LS +F + + + Sbjct: 292 IHQRWQKKAEPYSVILLDLDHFKHINDHYGHDVGD--IALLSA--ARLFSSALREHDVLC 347 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHK 230 R GGEEF +S Q A ++A+ L +I+ + IN + + S G A + C Sbjct: 348 RHGGEEFLVLLPATSSQAARVVADKLHRILRENPINWQDK-KVQLCASVGYATIYQGCQP 406 Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255 + ++ AD A+Y AK GR+R+ Sbjct: 407 D---KLLIEADHAMYRAKSEGRDRI 428 >gi|88798609|ref|ZP_01114193.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Reinekea sp. MED297] gi|88778709|gb|EAR09900.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Reinekea sp. MED297] Length = 295 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 11/170 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI++L+ D ++GL+N + I K++ +F D+DYFKQ+ND+FGH VG Sbjct: 124 RITRLAHFDSITGLINRNLLEDRARQAIYRAKRLQGKMAFLFLDLDYFKQVNDHFGHLVG 183 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ + ++ + +GRLGG+EF S + A+L + KII Sbjct: 184 DRLLKAVGLRVQSILRDDDTMGRLGGDEFLILVERISYADDAMLIGE--KIIHTLAEPFG 241 Query: 212 -SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G + I+ + GIA H I+T++ AD+A+Y AK+ GRN++ F+ Sbjct: 242 IDGHRLQISGTIGIALYPDHGHAINTLLDHADKAMYRAKELGRNKLAVFN 291 >gi|84387451|ref|ZP_00990470.1| GGDEF family protein [Vibrio splendidus 12B01] gi|84377704|gb|EAP94568.1| GGDEF family protein [Vibrio splendidus 12B01] Length = 299 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 83/170 (48%), Gaps = 19/170 (11%) Query: 98 NRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSI--VFFDIDYFKQINDNFGHPVG 151 N LS D L+G N H S+ + +LSI + DID+FK IND +GH +G Sbjct: 142 NMFEALSYQDALTGCYNRLYLHQVIEPSI---DRQLSITSIMIDIDHFKSINDTYGHQMG 198 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D VI L+D++ T R GGEEF G +E L N L + Sbjct: 199 DMVIKELADEIQKRLPTSSNCFRYGGEEFLVMVQGETEASIESLVNSL--------LESP 250 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S + +TIS G+ + +I ADQALY++KKSGRN++ +SD Sbjct: 251 SLLRLEVTISIGVKHASQALGSVEQLIDDADQALYISKKSGRNKIT-WSD 299 >gi|158522391|ref|YP_001530261.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3] gi|158511217|gb|ABW68184.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3] Length = 410 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 30/246 (12%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97 F V +FL ++ + P++ + L+ + +LV+ S+ + LLG + I +E +Y Sbjct: 160 FWHAVALCGGLFLLHLLIFPWFQMPTDLIVHSALVVFSVAVISLLG--NYRIEREFRRAY 217 Query: 98 NR-----------------ISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSI--VF 133 R + +++ D L+GL N F + L + E+LSI +F Sbjct: 218 LRALKMKIDARQLEGLNRQLEEMAVSDPLTGLFNRRHFDAHLDAEWRSAVREQLSISLIF 277 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEA 192 DID+FK NDN GH GD + ++D L P R GGEEF ++ +A Sbjct: 278 IDIDHFKLYNDNHGHQAGDLCLKQIADTLTENVHRPGDACVRYGGEEFVVLLANTNMDQA 337 Query: 193 AILANDLRKIIENSQINISSGP-SIHITISAGIAERC--HKEPISTIIYRADQALYVAKK 249 +A ++ ++ I P + +T+S G+A + ++ +AD++LY AK Sbjct: 338 LYVAQKIQSHLQALAIPHGYSPVAGEVTVSMGVASMVPDRDDTPEDLLEKADKSLYRAKD 397 Query: 250 SGRNRV 255 +GRNR+ Sbjct: 398 AGRNRI 403 >gi|78067984|ref|YP_370753.1| diguanylate cyclase [Burkholderia sp. 383] gi|77968729|gb|ABB10109.1| diguanylate cyclase [Burkholderia sp. 383] Length = 452 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 14/178 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 + L ++ + + S D L+G N H+ F+ + E LS++ D+D FK Sbjct: 275 QRLLEAHATLIRSSARDGLTGAFNRMHFNDHFHTLFLQAR-RQGEPLSLLMVDVDRFKAY 333 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND FGH GD + +++ L P V R GGEEFA + + A ++A + R+ Sbjct: 334 NDAFGHVKGDACLIAVANALAGAVRRPADIVARYGGEEFAIVLPNTGARGARVVAEEARE 393 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 + + + + P+ +++S G A + +ST +I AD ALY AK +GRNRVV Sbjct: 394 AVLRLDLAMPTAPAGRVSVSVGCAT-VSPDDLSTPDALIEAADAALYRAKDTGRNRVV 450 >gi|66044557|ref|YP_234398.1| GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63255264|gb|AAY36360.1| GGDEF [Pseudomonas syringae pv. syringae B728a] gi|330968993|gb|EGH69059.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 334 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIREQSQLSLLMIDVDYFKPYNDNFGHLEGD 224 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + I +I Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHI 284 Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 + P +T+S G+A + P +I AD+ LY AK +GRN+V Sbjct: 285 APAPGSSLTVSIGVATMTPQLGMPSRQLILDADKGLYQAKNNGRNQVAA 333 >gi|300856481|ref|YP_003781465.1| putative signal transduction protein [Clostridium ljungdahlii DSM 13528] gi|300436596|gb|ADK16363.1| predicted signal transduction protein [Clostridium ljungdahlii DSM 13528] Length = 354 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 17/171 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 YN+I Q S+ D L+GL N + F S + + +IV DID FK ND FGH GD Sbjct: 189 YNKIKQNSQKDFLTGLFNRNYFFSVIREKVKDCGKGFAIVMIDIDDFKSFNDRFGHQYGD 248 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ----EAAILANDL--RKIIENS 206 +V+ +SD + V R GGEE ++ E I +L +K +E + Sbjct: 249 RVLRKVSDIIKDSIRDEDMVARYGGEEIIIYMYNITDSMSVYERMINIGELIKKKAVEYN 308 Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 ++ S ++T+S GIA +K + + I RAD LY AK SG+N+VV Sbjct: 309 EV------SSYVTVSMGIAVCTNKNKDVEDTIRRADMNLYRAKNSGKNKVV 353 >gi|297539507|ref|YP_003675276.1| response regulator receiver modulated diguanylate cyclase [Methylotenera sp. 301] gi|297258854|gb|ADI30699.1| response regulator receiver modulated diguanylate cyclase [Methylotenera sp. 301] Length = 313 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 20/179 (11%) Query: 92 ELFISYNRISQLSRI-------DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDID 137 E+ + Y ++ Q SR D L+GL N F+ L ++ +K ++++ D+D Sbjct: 128 EVRLLYKQLEQYSRSMESWAMHDALTGLPNRRLFVDRLTLAMAHAHRKKCTTTVIYLDLD 187 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAIL 195 FK IND+FGH VGD ++ ++D+LV V R GG+EF L S + + ++ Sbjct: 188 GFKLINDSFGHDVGDMLLKIVADRLVAAVRKEDTVARFGGDEFVLVLWELDSPDGVSMLV 247 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 + L + E IN G +I I+ AG++ H E + T+I +AD ALY +K+ G+N Sbjct: 248 SKVLMTLSEPYFIN---GRTIRISACAGVSIYPDHSEDMETLIKKADIALYESKRIGKN 303 >gi|262402535|ref|ZP_06079096.1| GGDEF family protein [Vibrio sp. RC586] gi|262351317|gb|EEZ00450.1| GGDEF family protein [Vibrio sp. RC586] Length = 489 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 9/161 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +L+ D ++GLLN S L +++ L+I DID FKQIND +GH +GD+VI ++ Sbjct: 332 EELAARDPMTGLLNRRGMESFLKGKRHSQYLAIAVLDIDDFKQINDAYGHDMGDRVICYI 391 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +Q+ + V R GGEEF EQ I+ + S + + G Sbjct: 392 GEQIENHIRSSDAVARFGGEEFVVYVTAKEKEQITRIMQRIFDAVCRESPLILEPG---- 447 Query: 218 ITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S GI E + AD+ LYVAK SG+N++V Sbjct: 448 FTVSGGIEVVESTTDRSFEDLFKAADEKLYVAKTSGKNQLV 488 >gi|224824527|ref|ZP_03697634.1| diguanylate cyclase [Lutiella nitroferrum 2002] gi|224603020|gb|EEG09196.1| diguanylate cyclase [Lutiella nitroferrum 2002] Length = 593 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 8/173 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 +KEL I+ S + D L+G N IS N LS+ D+D FKQ+ Sbjct: 410 IKELEIALEAASAKVKEDQLTGAYNRRGLAEHFQREISRAERTNSPLSVALIDVDNFKQL 469 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND++GH GD + L + V R GGEEF + EA L++ Sbjct: 470 NDHYGHLTGDDALKHLVNVTRHTMRPSDIVARFGGEEFVILLPDTPPPEAIQAIQRLQRE 529 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + +++ + IT SAG+A+ E + +I RADQA+Y AK SG+NRV Sbjct: 530 LTKT-FFLANNDRLLITFSAGVAKWHLGERDTDVIERADQAMYQAKISGKNRV 581 >gi|188990072|ref|YP_001902082.1| putative signal transduction protein [Xanthomonas campestris pv. campestris str. B100] gi|167731832|emb|CAP50016.1| putative signal transduction protein [Xanthomonas campestris pv. campestris] Length = 326 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 15/178 (8%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQIND 144 F +Y + ++ D L+GL N F ++ G+ + + DID+FK++ND Sbjct: 135 FQNYRSLLDDAQRDALTGLRNRKTFDDMILRLFAANADGAQENAVWLGIVDIDHFKRVND 194 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-II 203 FGH GD+V+ ++ + F + R GGEEF G A L R+ + Sbjct: 195 TFGHLYGDEVLLLVAQLMQRCFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRRAVA 254 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 E+S + + +T+S GI E +S ++ AD+ALY AK+ GRNR +S++ Sbjct: 255 EHSFPQVGT-----VTLSTGIVELSDGRLVSQMLDEADKALYWAKQHGRNRAAVYSEL 307 >gi|194365112|ref|YP_002027722.1| response regulator receiver modulated diguanylate cyclase [Stenotrophomonas maltophilia R551-3] gi|194347916|gb|ACF51039.1| response regulator receiver modulated diguanylate cyclase [Stenotrophomonas maltophilia R551-3] Length = 447 Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 9/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L+GL N F+ L + + +++ DID+FK IND GH GD Sbjct: 268 LQDLATRDFLTGLPNRRCFLEQSQRQLPQLQLHGQCVAVAMIDIDHFKHINDTHGHEAGD 327 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + ++ + + + R GGEEF + EA + +LR+ I +++I + Sbjct: 328 DALRAVAGAVAAHARSQDLIARFGGEEFCLLVPDMEQDEALLYFEELRQRIAALEVDIGT 387 Query: 213 GPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ +T+S G+ R ++ + +I AD+ LY+AK GRNRV C + Sbjct: 388 A-TLRMTVSIGLCCLRPQRDALHRLISEADRQLYLAKAGGRNRVSCTT 434 >gi|320107860|ref|YP_004183450.1| diguanylate cyclase [Terriglobus saanensis SP1PR4] gi|319926381|gb|ADV83456.1| diguanylate cyclase [Terriglobus saanensis SP1PR4] Length = 408 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 83/181 (45%), Gaps = 21/181 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQ 141 +++L + + L+ ID L+ L N L + LSI+ D+D+FK+ Sbjct: 236 MEQLTAANLELDHLAGIDPLTNLANRRTLERHLAIEWRRAVRGERDSLSIIAIDVDHFKE 295 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND +GHP GD + L+ L +F V R+GG+EF G LA R Sbjct: 296 LNDTYGHPAGDDYLKMLAVMLREIFRREEDLVARVGGDEFVVLLTGIDASAVQSLAERTR 355 Query: 201 KIIENSQINISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +E S S H T+S G + P ++ ADQALY AK++GRN V C Sbjct: 356 SQMEAS--------SSHCTLSIGWVTVKPTPELRP-DALLRTADQALYRAKQNGRNHVSC 406 Query: 258 F 258 F Sbjct: 407 F 407 >gi|317154417|ref|YP_004122465.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316944668|gb|ADU63719.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 326 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 17/181 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ ++S +D L+GL N F +L G + L ++ DID+FK ND GH Sbjct: 145 RKLERMSNLDSLTGLANRRCFDDTLVKEWVRNGRADAHLGLIMIDIDHFKHYNDALGHVD 204 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL-----RKIIE 204 GD + +++ + V P V R GGEEFA G+ A +A+++ + IE Sbjct: 205 GDTCLRRVAEAIKGVVHRPGDMVARYGGEEFAVILPGTDYTGAMAVADNIHASVAQTSIE 264 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCFSDIE 262 + +S ++ I +S+GI C P +I AD+ALY AK++GRNR C E Sbjct: 265 HPDSAVSCVVTVSIGVSSGIPT-CGSTP-EQLIQAADRALYEAKEAGRNRTRSTCLPGPE 322 Query: 263 N 263 + Sbjct: 323 D 323 >gi|254282690|ref|ZP_04957658.1| diguanylate cyclase [gamma proteobacterium NOR51-B] gi|219678893|gb|EED35242.1| diguanylate cyclase [gamma proteobacterium NOR51-B] Length = 378 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 15/231 (6%) Query: 33 IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI-SGSILK 91 + F + IA + + + +GL L +I N ++ +SI +L+ ++ S +++ Sbjct: 130 LLFPMMIALAGLLPTMLAWLMGLGILASLMWIRQPNSDVMELSIMATLVATWVLSLGLMR 189 Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 + + ++ L+ D L+G LN I+ Y+ ++V DID+FK IND Sbjct: 190 LIAQQTDELADLALTDPLTGALNRRYLKPQTERNIADYRRYSRLSTLVMIDIDHFKAIND 249 Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202 GH GD+ + L + + G M RLGGEEF + A +A +LR +I Sbjct: 250 TLGHSEGDRALQNLVTLVEKRIRGVDMLY-RLGGEEFVIMLAETGTSSATRVAEELRVRI 308 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 E S S PS T+S G+ + + + D+ALY AK GRN Sbjct: 309 SEMS----SDEPSKRFTVSMGVCDVTVATSAEDWLRQLDEALYRAKDRGRN 355 >gi|241205730|ref|YP_002976826.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859620|gb|ACS57287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 783 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 14/178 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL S +R + + D L+GLLN F I++ + +L+ +F D+D FK IND Sbjct: 336 ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGHELACLFVDLDRFKWIND 395 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203 N GH GD + L ++L RLGG+EFA +E+ A ++ + I Sbjct: 396 NMGHAAGDMALIELVERLKTHLAPSDEAARLGGDEFAILLPAKDAEKRAKVMCEQIASIF 455 Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 E P +H++ S GIA H + ++ ++D A+Y K+ G+N F + Sbjct: 456 ET-----PFAPDMHLSASVGIAIYPHHAATAAELLQKSDMAMYAKKRDGKNGAQLFDN 508 >gi|241662143|ref|YP_002980503.1| diguanylate cyclase [Ralstonia pickettii 12D] gi|240864170|gb|ACS61831.1| diguanylate cyclase [Ralstonia pickettii 12D] Length = 585 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 13/165 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++++ D L+ LLN AF + ++++ FDID+FK+IND +GH VGD Sbjct: 405 LARMAETDPLTQLLNRRAFEDRASAMCNAPHPKARLVALIMFDIDHFKRINDTYGHAVGD 464 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + ++ + V R+GGEEFA S +A +A+ LR I +++ + + Sbjct: 465 EALRTVAGLCRAEGPSADMVARIGGEEFAVMIWADSLAQARAVADHLRHRI--AEVTVPT 522 Query: 213 GPSIHITISA----GIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G + ++A +A + +++ RAD+ LY AK +GRN Sbjct: 523 GTDLPCRMTASFGVAVAPAADGPKLESLLRRADRLLYAAKLAGRN 567 >gi|52841115|ref|YP_094914.1| two component response regulator protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628226|gb|AAU26967.1| two component response regulator with GGDEF domain [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 380 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 19/183 (10%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK------LSIVFFDIDYFKQIN 143 KEL I N + +S D LSGL N F + +N LS+V DID FK IN Sbjct: 197 KELLI--NELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLVSIDIDNFKLIN 254 Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 DN GHP GDKV+ ++D L +F + + RLGG+EFA +E + ++ Sbjct: 255 DNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISICETIKNP 314 Query: 203 IENSQINISSGPS-----IHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNR 254 + +N + + H+T+S GI H E ++I I AD+ALY AKK G+N+ Sbjct: 315 FKTENLNHTYDSNEQLFMSHVTLSIGIV-YIHFESSASIEHAITAADKALYQAKKKGKNQ 373 Query: 255 VVC 257 +V Sbjct: 374 IVV 376 >gi|325273996|ref|ZP_08140155.1| GGDEF domain-containing protein [Pseudomonas sp. TJI-51] gi|324100885|gb|EGB98572.1| GGDEF domain-containing protein [Pseudomonas sp. TJI-51] Length = 645 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + +D L+GL N +A+ + + L++ D+D+FK+IND++GH GDKV Sbjct: 483 QKALLDPLTGLPNRAAWSERVEREMLEWQAQGGHLAMAILDLDHFKRINDSYGHLAGDKV 542 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++DQL F+ R GGEEF ++ AA A LR IE + G Sbjct: 543 LKIVADQLRKCLRGRDFIARFGGEEFVLLLPQTAPPAAAQAAELLRATIEACPFHF-KGE 601 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT S G+A E ++ RAD ALY AK+ GRNRV Sbjct: 602 RVVITTSIGLAAFRAGERADQVLKRADTALYRAKELGRNRV 642 >gi|307150963|ref|YP_003886347.1| GAF sensors-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] gi|306981191|gb|ADN13072.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Cyanothece sp. PCC 7822] Length = 1297 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 10/191 (5%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128 ITI+ + G + ++L + + +LS ID L+ + N F L Sbjct: 1104 ITITAAIAIHQGELHQQLQNANLELKKLSAIDGLTQVANRHRFDVYLEQEWRRLMRSRHS 1163 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 LS++ D+D+FK ND +GH GD + ++ + G P V R GGEEFA + Sbjct: 1164 LSLILSDVDHFKWYNDTYGHLAGDHCLQQIARVIKTSVGRPADLVARYGGEEFAIVLPET 1223 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALY 245 S + A +A +R+ ++N I + +T+S G+A +S +I AD+ALY Sbjct: 1224 SLKGALFVAEQIRQKVKNLTIPHTKSAYQCVTLSLGVASLIPSGALSPKALINAADEALY 1283 Query: 246 VAKKSGRNRVV 256 AK +GR+RVV Sbjct: 1284 QAKANGRDRVV 1294 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 6/162 (3%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 SY+ I+QL + L + ++ GS L ++ D++ FK+IND+ GH VGD ++ Sbjct: 429 SYDPITQLPNWIIFNHRLALALVDATHGS--NMLGVLIIDLNQFKRINDSLGHGVGDYLL 486 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIENSQINI-SS 212 SD+L + F+ L A + Q A + N +K++ + Q Sbjct: 487 QKASDRLQNCLESYSFLEPLLARWHGAGFIVLLSQLAYVDEAINFSQKLLNDFQEPFYVQ 546 Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253 +I++ +S GIA + S ++ + A+ A+Y AK+ G+N Sbjct: 547 SQAIYLGVSIGIALAPYDGDSSEVLLKNAESAMYQAKQQGKN 588 >gi|312973827|ref|ZP_07787999.1| cellulose synthesis regulatory domain protein [Escherichia coli 1827-70] gi|310332422|gb|EFP99657.1| cellulose synthesis regulatory domain protein [Escherichia coli 1827-70] Length = 186 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N A ++ S++ D+D+FK IND FGH GD+V++ + Sbjct: 23 DTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAA 82 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + GR+GGEEF G+S EAA +A +R + ++ I+ +I I+ Sbjct: 83 GLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRIS 142 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+ +E + AD+ LY+AK++GRNRV Sbjct: 143 ASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 180 >gi|229174719|ref|ZP_04302243.1| Sensory box/GGDEF family protein [Bacillus cereus MM3] gi|228608709|gb|EEK66007.1| Sensory box/GGDEF family protein [Bacillus cereus MM3] Length = 431 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + +EK++++ FDID FK +ND +GH Sbjct: 262 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDNAMRNDEKIALILFDIDNFKTVNDTYGHD 321 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Sbjct: 322 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTNTVEKEAFQVAESLRFFIETKHF- 380 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 381 --SGIS-KLTASFGVALYEQGITREELMQRADIALYEAKKNGKNQVCVY 426 >gi|254521968|ref|ZP_05134023.1| pas:ggdef domain protein [Stenotrophomonas sp. SKA14] gi|219719559|gb|EED38084.1| pas:ggdef domain protein [Stenotrophomonas sp. SKA14] Length = 778 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 15/165 (9%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL+N + + S S+ + ++D+FK +ND+FGH GD+++ + Sbjct: 341 DPLTGLINRREIERLLERALLQVRSDGGTHSLCYINLDHFKLVNDSFGHAAGDQMLRSFA 400 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---SQINISSGPSI 216 D LV +VGRLG +EFA + + EA + L+++I N + IS G S Sbjct: 401 DYLVAAVRDGDWVGRLGADEFAVFLAHAGQDEAKRV---LQRVIRNLGQATFPISEG-SP 456 Query: 217 HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ S G+ E P ++ ++ AD A Y AK++GRNRV CF++ Sbjct: 457 QLSCSIGVVEVGADAPDVNWLMSAADSACYAAKQAGRNRVHCFNE 501 >gi|28210427|ref|NP_781371.1| diguanylate cyclase/phosphodiesterase [Clostridium tetani E88] gi|28202864|gb|AAO35308.1| diguanylate cyclase/phosphodiesterase-domain containing protein [Clostridium tetani E88] Length = 208 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 13/166 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + ++S DCL+ + N+ I + E I+ DID FK +NDNFGH GD Sbjct: 49 LKEISMEDCLTKVYNYRTIIEIIERQIKYSNCKGETFCILMIDIDDFKSVNDNFGHVFGD 108 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ +S ++ +VGR GGEEF + EA ++ +RK IE + Sbjct: 109 EILIKISKEIKKNIRKNDYVGRFGGEEFIIIFNNTKLSEAIRVSERIRKSIEGLEF---- 164 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S+ ITIS G+ E + E II AD LY AK G+NR +C+ Sbjct: 165 FRSLKITISGGVKEYSN-ESCKEIIDAADNFLYKAKGLGKNR-ICY 208 >gi|320158828|ref|YP_004191206.1| extracellular solute-binding protein family 3/GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O] gi|319934140|gb|ADV89003.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio vulnificus MO6-24/O] Length = 457 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 15/171 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 +EL ++ + QLS+ D L+ + N F+ L + + + +S++ FDID FK+IND++G Sbjct: 287 RELQLANENLLQLSQQDYLTQISNRRHFMEQLKNLSPEAVSVSVLIFDIDDFKRINDSYG 346 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD VI ++ Q+ + R+GGEEFA A G + +A LA + ++E Sbjct: 347 HATGDLVIQNVATQVDETLPSDTLYARIGGEEFAIVAFGLAFTDAQALAKKVCHVVEKLT 406 Query: 208 I-NISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNR 254 N+ G +TIS G C P S + AD+ +Y AK+ G+N+ Sbjct: 407 FNNVPEG----VTISLG----CAYYPFSNGHIDLGMADKLMYQAKRLGKNQ 449 >gi|167905123|ref|ZP_02492328.1| hypothetical protein BpseN_22964 [Burkholderia pseudomallei NCTC 13177] Length = 441 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N L++V D+D+FKQ N Sbjct: 254 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTPLALVMVDVDHFKQYN 313 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V G FV R GGEEFA G+ E+ AA +A R+ Sbjct: 314 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAAAIAERARQA 373 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E +I AD ALY AK GRN Sbjct: 374 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 425 >gi|152995887|ref|YP_001340722.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150836811|gb|ABR70787.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 368 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 106/236 (44%), Gaps = 24/236 (10%) Query: 40 ATVIFIANIFLFYIG---LTPFYGLEYILVENLSLVIISITISLLLG------YISGSIL 90 A IFI +I LF+ L Y E+ L+ + +TI L G Y S L Sbjct: 138 AAFIFIVSIMLFFPNDQMLLTTYSYEF----KTRLIYVFLTIVTLSGLYEVARYRSFMRL 193 Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLS-IVFFDIDYFKQIN 143 K + Y +Q D L+ L N L + K+S I DID FK IN Sbjct: 194 KTMKDKYEYQAQF---DYLTFLPNRRGIQKILNKDQRQRKHTHKVSTIAILDIDKFKVIN 250 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH VGD V+ S L + + R GGEEF ++EQEA +L +R+ + Sbjct: 251 DEFGHEVGDMVLKHTSRVLRDCIRSQDSLARWGGEEFLLLLPETTEQEALVLLESIRECV 310 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 E + SI IT+S G+ E + I +D +LY AK++GRN V ++ Sbjct: 311 EETPFG-HGNISIFITLSVGLCETSPDVDFNETIKFSDVSLYRAKQAGRNTVFAYT 365 >gi|160899825|ref|YP_001565407.1| diguanylate cyclase [Delftia acidovorans SPH-1] gi|160365409|gb|ABX37022.1| diguanylate cyclase [Delftia acidovorans SPH-1] Length = 387 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 15/211 (7%) Query: 52 YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111 +I L F+G ILV SLV + I LL ++G+ E RI+Q++ D L+ Sbjct: 174 FINLANFHG-TVILV---SLVEGVMAIMLLAMSMTGT---ERHRREERIAQIAARDPLTA 226 Query: 112 LLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 L N A E+ S ++ DID+FKQ+ND GH GD+++ LSD + Sbjct: 227 LDNRRALYLRAPQLLEQASAASPCALLLIDIDHFKQVNDLHGHDAGDRLLLTLSDLIRSA 286 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGI 224 RLGG+EF A L DLR+ + P + ++I A + Sbjct: 287 LPRGALAARLGGDEFVIVLRSVDHAAAQALGQDLREAFAQQARTLFETPEPVSLSIGATL 346 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ E +S + +AD+ALY +K+ GR+R+ Sbjct: 347 FDQPGVE-LSHWLKQADEALYTSKRKGRDRM 376 >gi|120403376|ref|YP_953205.1| diguanylate cyclase [Mycobacterium vanbaalenii PYR-1] gi|119956194|gb|ABM13199.1| diguanylate cyclase [Mycobacterium vanbaalenii PYR-1] Length = 362 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 18/206 (8%) Query: 64 ILVENLSLVIISITISLLLGYISG------SILKELFISYNRISQLSRIDCLSGLLNHSA 117 ILVE + I++ + +L+LG G +++ L I S D L+GLLN + Sbjct: 154 ILVETDDIRIVAGSAALVLGLNLGVPFGIHTLVHSLHIDLRD----SDRDPLTGLLNRRS 209 Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 F I++ N +++ D+D FK +ND GH VGD + ++ L Sbjct: 210 FYNMVRDLIAARRQVNTPVNVTMVDLDDFKLLNDTHGHAVGDAALVSVAAVLQEHTEPGT 269 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 +GRLGGEEF A + ++ + A I A +R+ I + I++ I T A AE H Sbjct: 270 VLGRLGGEEFVIADVDAAARHA-ITAERIRRGIAATPFQITASFGICSTTVAAGAEIDHP 328 Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256 + +I AD A+Y +K++G NRVV Sbjct: 329 GFLDRLIRAADAAMYQSKRAGGNRVV 354 >gi|66045833|ref|YP_235674.1| GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63256540|gb|AAY37636.1| GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 534 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 113/259 (43%), Gaps = 33/259 (12%) Query: 23 SPHTFMIYFSIFFSIFIATVIFIANIFLFYI--------GLTPFYGLEYILVENLSLVII 74 SPH Y ++ ++ +A + F + GL Y ++ E V+ Sbjct: 6 SPHMVRKYLYTVLWFYVLSIFLLAIAWEFELESLAMAAMGLP--YDQDFENAERWRFVLT 63 Query: 75 SITISLLLGYIS----GSILKELFISYNRI-------SQLSRIDCLSGLLN----HSAFI 119 S ++L I ++++L SYN + L+R D LSGLLN H + Sbjct: 64 STGFAVLSMVIPFILLKRLMQQLHSSYNDLLESQALSESLARHDPLSGLLNRRVFHEQLV 123 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178 + L + ++ D+D FK IND GH GD I +++ L G V RLGG+ Sbjct: 124 ARLQQPATQTAVFLIDLDKFKLINDTHGHAAGDAAICAVAESLRDATVGWQASVARLGGD 183 Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPIST 235 EF A G S E A LA ++ I S + + P + ++ + G IA +P Sbjct: 184 EFGLAVSGDFSHAELAPLAENILAKIAASSVGL---PRVALSATLGIAIAPMDGSDP-DL 239 Query: 236 IIYRADQALYVAKKSGRNR 254 ++ RAD A+Y K GR R Sbjct: 240 LLQRADSAMYRGKAGGRAR 258 >gi|262380496|ref|ZP_06073650.1| WspR [Acinetobacter radioresistens SH164] gi|262297942|gb|EEY85857.1| WspR [Acinetobacter radioresistens SH164] Length = 566 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 24/171 (14%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 ++ ++ D L+G+ N A I L + ++LS ++ DIDYFKQ+ND +GH +GD Sbjct: 405 QLRNIANTDILTGVSNRLALDEHIQYLEKHVKQLSQTCLILVDIDYFKQVNDQYGHIIGD 464 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--------AAALGSSEQEAAILANDLRKIIE 204 +VI ++ QL + + R GG+EF A L E+ +R ++ Sbjct: 465 QVIQLVASQLKKSVRSSDLIIRYGGDEFIIFLEYVEFGAVLKVVEK--------IRAEVQ 516 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + + +G SI +++S G+A E ++ +ADQAL+ AK +GRN V Sbjct: 517 QAHLKLENGNSISVSVSIGVA--TGAENWLELLEKADQALFRAKAAGRNSV 565 >gi|297570048|ref|YP_003691392.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] gi|296925963|gb|ADH86773.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] Length = 285 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 9/144 (6%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LSI+ DID+FK++ND GH GD+ + L ++ + R GGEE + Sbjct: 141 LSILLLDIDHFKEVNDKHGHLAGDRTLLNLVQEIKGNLRETDQLARYGGEEILIMLPHTP 200 Query: 189 EQEAAILANDLRKIIENSQINISSG-------PSIHITISAGIAE-RCHKEPISTIIYRA 240 E A ++A +R+ I I +++G P I IT+S G+A R + +A Sbjct: 201 EDGAKLVAEKIRRGIAGG-IMVAAGEREDEGWPDISITVSIGVAGLRDEFSSGKELFAKA 259 Query: 241 DQALYVAKKSGRNRVVCFSDIENN 264 DQALY AKK+GRNR V S++E Sbjct: 260 DQALYRAKKTGRNRCVAASELEQK 283 >gi|261823051|ref|YP_003261157.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] gi|261607064|gb|ACX89550.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] Length = 526 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 82/164 (50%), Gaps = 17/164 (10%) Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D ++ LLN S L + + +++ DID FK+IND GH VGD VI +LS + Sbjct: 368 DPMTELLNRRGLDSVLRYWQMGQKSFAVIALDIDRFKRINDTHGHDVGDTVIRYLSQLIR 427 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + R GGEEF +S+ EA +A LR+ + S I + ++TIS G Sbjct: 428 TSSREADILCRSGGEEFLILLPETSQDEAIKIAERLRQRTQESTIPVVG----NMTISLG 483 Query: 224 IAERCHKEP------ISTIIYRADQALYVAKKSGRNRVV-CFSD 260 +A EP I AD+ALY AK+ GRNRVV SD Sbjct: 484 VA---LWEPGTSGMSIERTFKLADEALYQAKQEGRNRVVSALSD 524 >gi|226940890|ref|YP_002795964.1| hypothetical protein LHK_01971 [Laribacter hongkongensis HLHK9] gi|226715817|gb|ACO74955.1| GGDEF domain protein [Laribacter hongkongensis HLHK9] Length = 879 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 2/127 (1%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 ++V DID+FK++ND+ GH VGD+V+ L+ ++ +GR+GGEEFA +S+ Sbjct: 740 AVVMLDIDHFKRVNDSHGHAVGDQVLQELARRMQAGLRETDCLGRMGGEEFAILLPQTSQ 799 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248 A + A L + I +G ++ +TIS G+++ + + + RAD ALY AK Sbjct: 800 DGACLFAERLCRKIAGVPFATEAG-ALVVTISLGVSQMQSDDASVDCALARADGALYAAK 858 Query: 249 KSGRNRV 255 GRNRV Sbjct: 859 SGGRNRV 865 >gi|170754902|ref|YP_001780010.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium botulinum B1 str. Okra] gi|169120114|gb|ACA43950.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium botulinum B1 str. Okra] Length = 892 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFI----SSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +I L+ D L+GL N I ++ SY NEK +++F D+D+FK IND GH VGD Sbjct: 467 KILGLAYYDSLTGLSNRKKIIETINKTINSYENEKFAVLFIDLDHFKSINDTLGHDVGDY 526 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209 V+ +S + ++ +GRLGG+EF ++ +E+ A + L I+ + + Sbjct: 527 VLEKVSARFKMLLSPKNKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 586 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + G SI I+I + ST++ AD A+Y AKK+G Sbjct: 587 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNG 623 >gi|149194719|ref|ZP_01871814.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Caminibacter mediatlanticus TB-2] gi|149135142|gb|EDM23623.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Caminibacter mediatlanticus TB-2] Length = 610 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/162 (36%), Positives = 91/162 (56%), Gaps = 10/162 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 S ID L+ N I+ + + N +K +++ FDID FK+IND +GH +GD V+ L+ + Sbjct: 207 SLIDPLTNTYNRK-IINRIENENIKKTALLIFDIDNFKKINDTYGHNIGDIVLKNLTQTI 265 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI---IENSQINISSGPSIHIT 219 + ++ R GGEEF L + EQ+ A+ + KI I N+ INI + + IT Sbjct: 266 KSQIRSNDYLIRYGGEEF-LLILNNIEQKDAL--KKIEKIFNTIRNTPINIGNK-KLFIT 321 Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 IS G+ KE I I +ADQ LY AK++G+N+ +S+ Sbjct: 322 ISGGVHLEPEKEKNIFEAIKKADQELYKAKRTGKNKYCIYSE 363 >gi|94496367|ref|ZP_01302944.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain [Sphingomonas sp. SKA58] gi|94424113|gb|EAT09137.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain [Sphingomonas sp. SKA58] Length = 364 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 13/183 (7%) Query: 84 YISGSILKELFISYNRISQLS---RIDCLSGLLNH-------SAFISSLGSYNEKLSIVF 133 Y+ ++ L ++ + QL R D L+ +LN S I+ + LS+V Sbjct: 178 YVGTAVSAVLVVAGDLAQQLRSQMRHDPLTEVLNRRGLEEAASQAIAQARRHGRPLSLVI 237 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D FK +NDN GH GD + + L++ VGR+GG+EF S Q AA Sbjct: 238 CDLDGFKALNDNHGHIAGDHALKGFAQLLILAVRRGDIVGRMGGDEFGLLLQDSDAQAAA 297 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252 + +R +E + +++ P + S G+A ++ + +++RAD+ALY AKK G+ Sbjct: 298 DVMERVR--LEVAHLSLPKVPESTLRASFGVAALLPEDLTLEDMVHRADEALYSAKKLGK 355 Query: 253 NRV 255 NRV Sbjct: 356 NRV 358 >gi|51246057|ref|YP_065941.1| hypothetical protein DP2205 [Desulfotalea psychrophila LSv54] gi|50877094|emb|CAG36934.1| hypothetical protein DP2205 [Desulfotalea psychrophila LSv54] Length = 516 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 22/188 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFK 140 + +EL ++ L+ ID L+ NH F ++L S N +S++ FDID FK Sbjct: 327 KLTEELAKKNRQLETLANIDGLTNCYNHRYFQNALDQELSRSSRNSLAISLIMFDIDNFK 386 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 + ND++GH GD ++ L+ + + R GGEEF + +++A I+A +R Sbjct: 387 RFNDSYGHQAGDFILCELTRLIQEQIRKDDVLARYGGEEFVIILPETEKEDALIVAEKVR 446 Query: 201 KIIENSQINISSGPSIH----ITISAGIAERCHKEPISTI-----IYRADQALYVAKKSG 251 E S +IH ITIS G+A H IS + I + D ALY AK++G Sbjct: 447 HACEE-----HSFQNIHKTHQITISLGVATE-HSAQISPLNKTSFIDKTDLALYSAKENG 500 Query: 252 RNRVVCFS 259 RN+VV +S Sbjct: 501 RNKVVVYS 508 >gi|84387541|ref|ZP_00990559.1| GGDEF family protein [Vibrio splendidus 12B01] gi|84377589|gb|EAP94454.1| GGDEF family protein [Vibrio splendidus 12B01] Length = 338 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D + L N +F I +L E L ++ DID+FK ND +GH GD V+ ++ +L Sbjct: 182 DSTTTLYNRRSFDRDIETLCEAKESLCLILLDIDHFKNFNDTYGHLFGDMVLKGIARKLK 241 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA S + A LA+ R+ +E I + SG + IT S Sbjct: 242 LSCREGISAYRFGGEEFALIVPNKSLRIARQLADTNRRSLEKLSIKDRRSGQQVGSITAS 301 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE E ++I RAD+ LY AK GRNRV+ Sbjct: 302 FGVAELEPGESAQSLIERADKLLYEAKSLGRNRVM 336 >gi|238782955|ref|ZP_04626983.1| hypothetical protein yberc0001_1070 [Yersinia bercovieri ATCC 43970] gi|238716158|gb|EEQ08142.1| hypothetical protein yberc0001_1070 [Yersinia bercovieri ATCC 43970] Length = 499 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 9/158 (5%) Query: 104 SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 ++ D ++GL N ++L G + S++ DID+FK IND +GH +GD+VI L+ Sbjct: 346 AQTDPMTGLYNRRGLATALEPIGQLGQHFSVIALDIDHFKLINDTYGHDIGDEVIKQLAT 405 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHIT 219 Q+ + R GGEEF G++ A +AN LR + I NI IT Sbjct: 406 QIRDSSRDTDILCRSGGEEFLMLLPGTTLDVATQVANRLRHNVAMMAIANIRP-----IT 460 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IS G+A + + AD ALY AK+ GRNRV Sbjct: 461 ISLGVAYWSGEGMPEDALKLADAALYRAKQQGRNRVAV 498 >gi|300714940|ref|YP_003739743.1| Diguanylate cyclase [Erwinia billingiae Eb661] gi|299060776|emb|CAX57883.1| Diguanylate cyclase [Erwinia billingiae Eb661] Length = 427 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 87/160 (54%), Gaps = 10/160 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++ +R D L+GL N +AF +L + ++++++F D+D FK++ND +GH GD Sbjct: 246 LAHQARHDALTGLPNRTAFEQALHTLMNNPQTADRVAVLFIDVDRFKEVNDTYGHAAGDN 305 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINIS 211 V+ + +L V RLGG+EFA A + + EQ A + N + ++E I ++ Sbjct: 306 VLTETAHRLRGRLRKDDLVARLGGDEFAVLLAGIENGEQAARMAENVIEAMLE--PIRLT 363 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 G ++ ++S G+A + +I +AD A+Y K+ G Sbjct: 364 DGKTVAQSLSIGVALAKNHRTGEAMIAQADAAMYHIKELG 403 >gi|289679306|ref|ZP_06500196.1| GGDEF [Pseudomonas syringae pv. syringae FF5] gi|330975177|gb|EGH75243.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 355 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 15/240 (6%) Query: 21 SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---IISIT 77 S S +I S ++ + +A L + L+P G++ V + + I S++ Sbjct: 97 SLSVAVMIILCSTLLVVYTRDYLVVA--ILAWCILSPAQGVDTDSVAAVFMTLFFITSVS 154 Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134 + ++ + L+ + ++ +LS D L+ +LN A + +L ++ N + Sbjct: 155 LGSVMNHTYTRTLRTVLSLEHQFRELSLTDDLTAILNRRALMQALDNHVLNNSAGYFLML 214 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID FK IND FGH GD+ + ++ L G+ F GR+GGEEF SE +A Sbjct: 215 DIDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAF-GRMGGEEFGVILPMCSEDDARD 273 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +L + I S ++ P +T SAG+A+ S ++ AD LY AK+ G++R Sbjct: 274 YVLNLLECIRKS---LAVSP---LTCSAGLADIPAAADSSEVLKTADINLYQAKRGGKDR 327 >gi|237731472|ref|ZP_04561953.1| diguanylate cyclase domain-containing protein [Citrobacter sp. 30_2] gi|226907011|gb|EEH92929.1| diguanylate cyclase domain-containing protein [Citrobacter sp. 30_2] Length = 308 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 104 SRIDCLSGL-----LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S ID L+GL L+ S L + L I+ DID FK +ND +GH VGD V+ L Sbjct: 129 SNIDALTGLPGRRMLDESFDRQLLDAEPLNLYILLLDIDRFKYVNDTYGHLVGDVVLRAL 188 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L+ R GGEEF ++++A L ++I +I + G I I Sbjct: 189 ASNLLSWTRYDEAAYRYGGEEFIIIIRTKTDEQACQAGLRLCRLIGQKKIPYAEG-EIGI 247 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T++AGI E + T + RAD+A+Y K++GRNR + + E Sbjct: 248 TVTAGITRVQQGETLDTALGRADRAMYQGKQTGRNRCMFMDENEQ 292 >gi|27381658|ref|NP_773187.1| hypothetical protein bll6547 [Bradyrhizobium japonicum USDA 110] gi|27354827|dbj|BAC51812.1| bll6547 [Bradyrhizobium japonicum USDA 110] Length = 830 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 18/199 (9%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL- 129 L+ +S++ L+L + + L ++ R+ +L++ D L+GL N + F++ L N +L Sbjct: 371 LLTLSLSAYLMLASRNS---RRLSLANRRVLELAQTDILTGLPNRAFFLARLDDLNGQLN 427 Query: 130 ------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 SI+ D+D FK +ND+ GH GD ++ ++ +L + RLGG+EFA Sbjct: 428 DGGSTFSILMLDLDRFKNVNDSLGHGAGDALLRQVAQRLKSALRATDVLARLGGDEFAII 487 Query: 184 ALGSSEQE--AAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRA 240 G+ +Q + LA + K++ ++ + G + I S GIA H ++ +A Sbjct: 488 QEGAEDQRTCSTELAARIAKLV--AEPFLLPGHRVEIGTSIGIAIAPDHGSDQEQLLKKA 545 Query: 241 DQALYVAKKSGRNRVVCFS 259 D ALY +K +GRN CF+ Sbjct: 546 DLALYRSKSAGRN---CFT 561 >gi|322435543|ref|YP_004217755.1| diguanylate cyclase with PAS/PAC sensor [Acidobacterium sp. MP5ACTX9] gi|321163270|gb|ADW68975.1| diguanylate cyclase with PAS/PAC sensor [Acidobacterium sp. MP5ACTX9] Length = 620 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 9/169 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ L N F ++ LS++ D+D+FK+ ND +GHP GD Sbjct: 435 LEELAGNDELTRLANRRTFNRMLTQEVARHARAKNSLSMLMVDVDFFKKYNDRYGHPEGD 494 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + +++ + + F R+GGEEF + + A A + IE+ QI Sbjct: 495 VCLRMVAESIQIASRASDFAARVGGEEFTVLLPDTDQAGAEQAAQRILSHIESLQIRHEG 554 Query: 213 GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259 P ++T+S G A + + +I +AD+ALY +KK+GRNR+ + Sbjct: 555 SPFGYVTVSIGAATWPPEFVADEAYLIQQADRALYESKKTGRNRLTSMT 603 >gi|255320299|ref|ZP_05361484.1| ggdef domain protein [Acinetobacter radioresistens SK82] gi|255302738|gb|EET81970.1| ggdef domain protein [Acinetobacter radioresistens SK82] Length = 565 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 24/171 (14%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 ++ ++ D L+G+ N A I L + ++LS ++ DIDYFKQ+ND +GH +GD Sbjct: 404 QLRNIANTDILTGVSNRLALDEHIQYLEKHVKQLSQTCLILVDIDYFKQVNDQYGHIIGD 463 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--------AAALGSSEQEAAILANDLRKIIE 204 +VI ++ QL + + R GG+EF A L E+ +R ++ Sbjct: 464 QVIQLVASQLKKSVRSSDLIIRYGGDEFIIFLEYVEFGAVLKVVEK--------IRAEVQ 515 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + + +G SI +++S G+A E ++ +ADQAL+ AK +GRN V Sbjct: 516 QAHLKLENGNSISVSVSIGVA--TGAENWLELLEKADQALFRAKAAGRNSV 564 >gi|225851410|ref|YP_002731644.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1] gi|225645904|gb|ACO04090.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1] Length = 621 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 9/170 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFL 158 + Q + D L+G+ N + + K IV DID+FK+IND +GH +GD+V++ Sbjct: 218 LKQRAYTDSLTGVFNRNYLEEITDVIDLKDYIVMLVDIDHFKRINDTYGHEIGDRVLSKF 277 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL--ANDLRKIIENSQINISSGPSI 216 ++ + + R GGEEF +Q+ L A L IEN++ SG I Sbjct: 278 AELIKQNLRRDDIIIRYGGEEFLVLLKNYRKQKKDSLKVAERLMDTIENTEF---SG--I 332 Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 IT+S GI K ++ I +AD ALY AK+ GRNR+ F++ ++++ Sbjct: 333 RITVSIGINMDTDKSRNLTDAIKKADTALYKAKREGRNRIEIFTEAKDDS 382 >gi|218962133|ref|YP_001741908.1| hypothetical protein CLOAM1875 [Candidatus Cloacamonas acidaminovorans] gi|167730790|emb|CAO81702.1| hypothetical protein CLOAM1875 [Candidatus Cloacamonas acidaminovorans] Length = 321 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 12/181 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 KEL + + + ++ D L+GL N + ISSL + N ++ DID FK++ Sbjct: 142 KELSNANIGLKRQAKYDSLTGLYNRWVMLEMLNKEIISSLET-NRGFAVGIADIDDFKKV 200 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD V+ L+ + V R GGEEF ++E A I+ +RK Sbjct: 201 NDTYGHDCGDLVLVKLTQSFLQKIRVTDSVCRWGGEEFLFLFSETTESGAMIVVERIRKA 260 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSD 260 IE IN G I +TI+ G++ ++ + + ++ RAD+A+Y K SG+N+ V +S+ Sbjct: 261 IEELIINY-KGNQIKVTITIGVSFYNGQDHLDSKELVDRADKAMYEGKSSGKNKAVLYSN 319 Query: 261 I 261 I Sbjct: 320 I 320 >gi|323977864|gb|EGB72950.1| diguanylate cyclase domain-containing protein [Escherichia coli TW10509] Length = 564 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 19/201 (9%) Query: 74 ISITISLLLG----------YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122 ISI ++LL Y+ ++ +++ + + + D L+ L N A Sbjct: 358 ISIALTLLWALFTSMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTHLYNRGALFEKAR 417 Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 ++ S++ D+D+FK IND FGH GD+V++ + + GR+G Sbjct: 418 QLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRALDVAGRVG 477 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234 GEEF G+S +AA +A +R + ++ I+ +I I+ S G+ +E Sbjct: 478 GEEFCVILPGASLTQAAEVAERIRLKLNEKEMLIAKSSTIRISASLGVSSSEETGDYDFE 537 Query: 235 TIIYRADQALYVAKKSGRNRV 255 + AD+ LY+AK++GRNRV Sbjct: 538 QLQSLADRRLYLAKQAGRNRV 558 >gi|307130239|ref|YP_003882255.1| GGDEF domain-containing protein [Dickeya dadantii 3937] gi|306527768|gb|ADM97698.1| GGDEF domain protein [Dickeya dadantii 3937] Length = 544 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 29/221 (13%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR-----------------ID 107 L EN+S ++++I + + + G +LK++ ++ +SR +D Sbjct: 322 LTENISAMLLNIMVLFAMFVLGGFVLKQIRLTVKNKEAISRLHQEESDKNKVLQKLALVD 381 Query: 108 CLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA-FLS 159 L+ L N F SL E+ LS++ D+D+FK+ ND +GH +GD+ + Sbjct: 382 PLTKLANRRRFDLYLDQSLTRAREEGGLLSLIMLDVDFFKRYNDTYGHVLGDRCLTQLGG 441 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG--PSIH 217 ++ R GGEEFA G + ++AA+ + + + I + P + Sbjct: 442 VLNGLLLPDGALAARYGGEEFAIILPGMNGEQAAVYGERVVESVRRCAIQHQASLLPRLV 501 Query: 218 ITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+ P I + ADQALY+AKK GR+R V Sbjct: 502 VTVSVGVYSHSSDNPCDIQRLKEGADQALYLAKKKGRDRCV 542 >gi|300713215|ref|YP_003739254.1| diguanylate cyclase [Erwinia billingiae Eb661] gi|299060286|emb|CAX53536.1| diguanylate cyclase [Erwinia billingiae Eb661] Length = 528 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 10/175 (5%) Query: 88 SILKELFISYNRISQLS---RIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQI 142 ++ L + N++S L+ R D L+GLLN F + + + + + DID+FK+I Sbjct: 343 AVYHHLQMMINQVSSLTDETRTDPLTGLLNRRGFATLIRQHARTPNHCAIAVDIDHFKKI 402 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GD V+ L+ L + V R GGEEF + +AA A +R + Sbjct: 403 NDRLGHDAGDAVLISLAGLLRTACRSSDIVSRSGGEEFVIFMPDTQLSDAAATAERVRHL 462 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 +E S + IT+SAG+A + + ++R AD ALY AK +GRN V+ Sbjct: 463 VETSLFPYAG----QITVSAGVAALIDVQGSTEGLFRQADMALYEAKGAGRNIVI 513 >gi|317129953|ref|YP_004096235.1| diguanylate cyclase [Bacillus cellulosilyticus DSM 2522] gi|315474901|gb|ADU31504.1| diguanylate cyclase [Bacillus cellulosilyticus DSM 2522] Length = 759 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 11/140 (7%) Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 ISS Y E + + FDID+FK++ND +GH +GD+VI ++ + + R GGE Sbjct: 626 ISSFDKY-ESGAFILFDIDHFKRVNDQYGHQIGDEVIIQVAKMISSTIKSKDIAARWGGE 684 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PIST 235 E A + EA +A +RK ++ S H+T+S+G++ + + Sbjct: 685 EIAIYLPEEDKVEAMAIAEIIRK-------KVAQHSSPHVTVSSGVSSWSKTDNQCSLKR 737 Query: 236 IIYRADQALYVAKKSGRNRV 255 + AD+ALY AK +GRNRV Sbjct: 738 LFQDADKALYKAKSAGRNRV 757 >gi|262198873|ref|YP_003270082.1| diguanylate cyclase [Haliangium ochraceum DSM 14365] gi|262082220|gb|ACY18189.1| diguanylate cyclase [Haliangium ochraceum DSM 14365] Length = 316 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 12/182 (6%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136 +++GS ++ + + I +++ ID L+G N FI L + + L++V D+ Sbjct: 129 FLTGSNIESAY--HEEIYRMTIIDGLTGAYNKRYFIDFLERELARAHRHEQPLTLVMLDL 186 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK++ND+ GH GD V+ LS ++ R GGEEFA G++ + A Sbjct: 187 DHFKRVNDDLGHLAGDAVLKELSARVRPRIRREDLFARYGGEEFAVILTGTTLEGGVRFA 246 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254 +R ++ + +G I +T S G + H+ + +I+RAD+ LY AK GRNR Sbjct: 247 EHVRSLVCERPF-LFNGQPIDVTTSLGASCMFHEPGVDAEQLIHRADENLYKAKDRGRNR 305 Query: 255 VV 256 V Sbjct: 306 SV 307 >gi|224369321|ref|YP_002603485.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223692038|gb|ACN15321.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 341 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 13/173 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 +EL + Q++ ID L+GL N L Y ++ DID+FK +N Sbjct: 165 RELEKKNRELEQIAIIDQLTGLFNRRKLDEMLSRELIRSRRYGNSFGLIMVDIDFFKTVN 224 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH +GD+V+ +DQL +GR GGEEF + + +LA LR + Sbjct: 225 DTHGHQIGDQVLQRFADQLKQGVREVDVLGRWGGEEFLIICPETIKDYLILLAEKLRIAV 284 Query: 204 ENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ + P + T S G+ + + T++ + D+ALY+AK+ GRNRV Sbjct: 285 QSIAV-----PGVGEKTASFGVTVYEKGDNLDTLVDKVDKALYLAKEKGRNRV 332 >gi|206563403|ref|YP_002234166.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] gi|198039443|emb|CAR55410.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] Length = 516 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 12/168 (7%) Query: 100 ISQLSRIDCLSGLLN----HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVG 151 I L+R D L+GL N H+A L + +I++ D+D FK IND FGH G Sbjct: 338 IRHLARHDALTGLPNRHELHAALKRMLARRPRLPSPAFAIMYLDLDGFKSINDRFGHQAG 397 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++++L R+GG+EF A ++ +ILA + + I ++ +S Sbjct: 398 DEVLTQVAERLGKTLPPGELAARIGGDEFVVAIDDTTMHACSILAARIIRQI-SAPYGLS 456 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G ++ I IS GIA + H P +I +AD ALY AK +G+ + CF Sbjct: 457 NGETVCIGISIGIALDDGHGSP-DELIRQADSALYDAKSAGKG-IYCF 502 >gi|71278624|ref|YP_271328.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71144364|gb|AAZ24837.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 266 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 8/164 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVG 151 + QL+ D L+ L N + L E LSI+ D+DYFK+IND +GH G Sbjct: 100 KYQQLAHFDPLTQLSNRRDALGILKQEQARMIRSKEPLSIIICDVDYFKKINDQYGHNAG 159 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ L+ V R GGEEF + + A + A +++ ++N ++ Sbjct: 160 DAVLIELAKIFTSNIREQDCVARWGGEEFLFILPQTLARNANVFAVKIQEKLQNHLVDY- 218 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G I +++S GI + + I II AD+ LY AK SGRN++ Sbjct: 219 QGKEIKVSVSMGIEQFNGNQNIDEIINSADKYLYQAKNSGRNQI 262 >gi|119775136|ref|YP_927876.1| GGDEF family protein [Shewanella amazonensis SB2B] gi|119767636|gb|ABM00207.1| diguanylate cyclase [Shewanella amazonensis SB2B] Length = 347 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 12/211 (5%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSR---IDCLSGLLN 114 LE +L +LV S I Y +G + K E+ R+++ + D L+G LN Sbjct: 136 LEQVLNLVRTLVKESDAIRESTSYFTGQLAKAQQEIDTLKRRLAESEKDVFFDALTGCLN 195 Query: 115 HSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 AF + L E ++ DID+FK NDN+GH +GD+V+ + +L + Sbjct: 196 RRAFDADLAGLLALAPEGCCLILCDIDHFKHFNDNYGHQLGDQVLKLVGKRLTEACRDGV 255 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA--GIAERC 228 R GGEEFA S+ + A LA +R+ +E + + ISA G+A+ Sbjct: 256 KCYRYGGEEFALLVPSSNLRIARQLAEGIRRGVEKLTLKDRRRDARIDNISASFGVAQWQ 315 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 K +I +D+ LY AK+ GRNRV+ S Sbjct: 316 PKMTARNLIEHSDKQLYEAKRLGRNRVMPIS 346 >gi|292669740|ref|ZP_06603166.1| sensory box/GGDEF domain protein [Selenomonas noxia ATCC 43541] gi|292648537|gb|EFF66509.1| sensory box/GGDEF domain protein [Selenomonas noxia ATCC 43541] Length = 595 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 12/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQIN 143 +EL + R+SQL+ D L+ LLN L S EK LS++ DID+FK IN Sbjct: 415 EELHTANQRLSQLASRDALTNLLNRREMERLLNAAVEHSQQEKTPLSVILMDIDHFKGIN 474 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GDKV+ +++ + R GG+EF G+ A + +R+ + Sbjct: 475 DTYGHDMGDKVLLTVAETISHTIRGSDAGCRWGGDEFFIILQGAPLTVAGRVGERIRRKV 534 Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 E ++ HITIS G+A ++ + AD+ALY AK +GRN V Sbjct: 535 EGFEMPFHQ----HITISVGVASFDPDRDNELQLFKNADEALYQAKAAGRNAV 583 >gi|169628927|ref|YP_001702576.1| diguanylate cyclase/phosphodiesterase [Mycobacterium abscessus ATCC 19977] gi|169240894|emb|CAM61922.1| Diguanylate cyclase/phosphodiesterase [Mycobacterium abscessus] Length = 363 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 22/165 (13%) Query: 102 QLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 +L+R D L+GLLN A+ +++G +++V D++ FKQIND FGH VGD+V+ Sbjct: 206 RLARHDVLTGLLNRRGLQEAYEATVGVPGMHVTVVVVDLNLFKQINDTFGHHVGDQVLQR 265 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + +L V G + RLGG+EF +G + D ++ +E + +N S+ + Sbjct: 266 TAHRLRSVVGPDALLARLGGDEFGIVVVGDAPPHI-----DYQRAVEEA-LN-SASEDVP 318 Query: 218 ITISAGIAERCHKE----------PIST-IIYRADQALYVAKKSG 251 ++ S G+A E PI T ++ AD A+Y AKK+G Sbjct: 319 VSASVGVAAAILPESDRTTIHTLGPIVTHLLVEADGAMYGAKKAG 363 >gi|121591683|ref|ZP_01678916.1| ggdef family protein [Vibrio cholerae 2740-80] gi|121546458|gb|EAX56684.1| ggdef family protein [Vibrio cholerae 2740-80] Length = 326 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 7/163 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGD 152 N + L+ D L+G N + +S + L ++ D+D+FK IND FGH GD Sbjct: 143 NSLLYLASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGD 202 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ + V G R+GGEEF S ++A + LR I+ Sbjct: 203 KVLIETTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCEHLRAIVSQHLFAFRE 261 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +TIS G+ E + ++ ++ AD LY AKK+GRN+V Sbjct: 262 -KRVQVTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQV 303 >gi|27366949|ref|NP_762476.1| extracellular solute-binding protein [Vibrio vulnificus CMCP6] gi|27358516|gb|AAO07466.1| Extracellular solute-binding protein, family 3/GGDEF domain protein [Vibrio vulnificus CMCP6] Length = 457 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 15/171 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 +EL ++ + QLS+ D L+ + N F+ L + + + +S++ FDID FK+IND++G Sbjct: 287 RELQLANENLLQLSQQDYLTQISNRRHFMEQLKNLSPEAVSVSVLIFDIDDFKRINDSYG 346 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD VI ++ Q+ + R+GGEEFA A G + +A LA + ++E Sbjct: 347 HATGDLVIQNVATQVDETLPSDALYARIGGEEFAIVAFGLAFTDAQALAKKVCHVVEKLT 406 Query: 208 I-NISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNR 254 N+ G +TIS G C P S + AD+ +Y AK+ G+N+ Sbjct: 407 FNNVPEG----VTISLG----CAYYPFSNGHIDLGMADKLMYQAKRLGKNQ 449 >gi|323498302|ref|ZP_08103304.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] gi|323316730|gb|EGA69739.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] Length = 486 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + ++ +LS D ++GLLN F + + + ++I FDID FK IND +GH VGD Sbjct: 323 VEHSYFKELSAKDPMTGLLNRRGFQTFIAGVQHQRYVAIAVFDIDNFKSINDTYGHDVGD 382 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINIS 211 VI++++DQ+V R GGEEF + G E + I +SQ I Sbjct: 383 NVISYMADQIVASIRDCDVAARFGGEEFVVYMSGGDVESLKKSMLRVQEAICAHSQQIIE 442 Query: 212 SGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G T+S G + + + + AD+ LY+AK SG++++V Sbjct: 443 PG----FTVSGGVEVVDGDNASDFDQLFKAADEKLYIAKTSGKDQLV 485 >gi|319763264|ref|YP_004127201.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|317117825|gb|ADV00314.1| diguanylate cyclase [Alicycliphilus denitrificans BC] Length = 334 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 93/207 (44%), Gaps = 23/207 (11%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSL---- 122 S + +T ++K +F+ Y L S D L+GLLN F Sbjct: 115 STACLEVTQPRAFTRHQRDVVKGVFLVYQNYQNLLDYSERDALTGLLNRKTFEEQFARDA 174 Query: 123 --------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 G+ + + DID+FK +ND FGH GD+V+ +++ L + + R Sbjct: 175 GSAPAADGGADLPRPWLAVIDIDHFKSVNDRFGHLYGDEVLILVANVLRAQCKSQDRIFR 234 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPI 233 GGEEF + +A + LR ++ P I HIT S G A P+ Sbjct: 235 FGGEEFVVLLRSVTLAQARQVFERLRAAMQAHAF-----PQIGHITASIGFAASQRGSPV 289 Query: 234 STIIYRADQALYVAKKSGRNRVVCFSD 260 ++ RADQALY AK+SGRNR VCF D Sbjct: 290 E-VLGRADQALYHAKESGRNR-VCFYD 314 >gi|289663003|ref|ZP_06484584.1| hypothetical protein XcampvN_07945 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 324 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 15/194 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119 + +S +++++ ++L +GY +++ + + +L+ +D L+GL N I Sbjct: 133 QGVSTIVVTL-VTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTHQI 188 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ S++ D+D+FK++ND +GH GD ++ L+ L P V R GGEE Sbjct: 189 DQRQPHDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVCEPHQVFRFGGEE 248 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F S E LRK+I N GP IT+S G A + R Sbjct: 249 FVVLLRAGSLAELEAATERLRKVIRNGL----RGPGGRITVSLGAARHDGETHWQDWFSR 304 Query: 240 ADQALYVAKKSGRN 253 AD ALY+AK GR+ Sbjct: 305 ADAALYLAKNGGRD 318 >gi|289208648|ref|YP_003460714.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] gi|288944279|gb|ADC71978.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] Length = 290 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 8/151 (5%) Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 +DC+ GL ++G LS++ D+D FK +ND GH GD + ++ L Sbjct: 138 MDCVEGL------AETVGDQARSLSVMMLDLDDFKALNDTHGHAAGDYALQSFAEILRGE 191 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 G + GR+GGEEF A A LA +R +E + I G +H+ +S G+ Sbjct: 192 LGADQYAGRMGGEEFLVVAADLDLDAAKNLAERIRTSVEQT-IPRWKGEPLHLEVSIGLV 250 Query: 226 ERCHKEPIS-TIIYRADQALYVAKKSGRNRV 255 + P + ++ AD LY AK GRNRV Sbjct: 251 VTTERWPDAGALVAAADDLLYRAKNEGRNRV 281 >gi|119900066|ref|YP_935279.1| GGDEF family protein [Azoarcus sp. BH72] gi|119672479|emb|CAL96393.1| GGDEF family protein [Azoarcus sp. BH72] Length = 475 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 7/161 (4%) Query: 107 DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ LLN + L E +++ D+D+FKQIND GH GD+V+ ++ Sbjct: 314 DALTQLLNRRFLPAILTRETEIARNQHKSFALLLVDVDHFKQINDVHGHDAGDRVLQQIA 373 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L+ + FV R GGEEF + Q AA +A +R+ ++ + + +T Sbjct: 374 SLLLNTVRSGDFVFRYGGEEFLVLLVEVDRQHAARVAEKIRQRVQQETFLLPDSRQLQVT 433 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S G+A +I +AD ALY AK GRNR +D Sbjct: 434 ASVGVALHDGHPDYQRLINQADDALYRAKTGGRNRCEFATD 474 >gi|94971549|ref|YP_593597.1| diguanylate cyclase with GAF sensor [Candidatus Koribacter versatilis Ellin345] gi|94553599|gb|ABF43523.1| diguanylate cyclase with GAF sensor [Candidatus Koribacter versatilis Ellin345] Length = 499 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 13/169 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + ++ L+ +D L+G+ N F + Y LS++ DID FK++ND FGH Sbjct: 323 FQQVEALAYVDGLTGVYNRRFFERKITEELERAARYEGTLSVIMVDIDNFKKVNDEFGHL 382 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD+V+ ++ P R GGEEF+ +S +A +A LR +I + Sbjct: 383 LGDEVLRTVAQIFAGALRKPDHCCRYGGEEFSIILPETSGPKALKVAEKLRGLIADYDF- 441 Query: 210 ISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G ITISAG+A+ C I+ AD LY+AK+SGRN V+ Sbjct: 442 --PGIPRRITISAGVADFPTCGTT-RDDIVGAADNCLYLAKQSGRNCVM 487 >gi|320449442|ref|YP_004201538.1| putative response regulator protein [Thermus scotoductus SA-01] gi|320149611|gb|ADW20989.1| putative response regulator protein [Thermus scotoductus SA-01] Length = 538 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 80/165 (48%), Gaps = 13/165 (7%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GLLN + L Y +S+V DID FK++ND +GHPVGD+V+ Sbjct: 376 LALTDPLTGLLNRRGLEAELPKLLALARRYQAPISVVMLDIDRFKRVNDTYGHPVGDEVL 435 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L L R GGEEF G+ A + +R + +++ P Sbjct: 436 KLLGRILQASVRREDLAVRYGGEEFLLFLYGADRLAAKEVVERIRYRFRHQRVDPIPYP- 494 Query: 216 IHITISAGIA--ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVC 257 +T+SAGIA E E + + +AD AL AK++GR+RV Sbjct: 495 --LTLSAGIAGGEVPESEAQLEDWVLKADYALLRAKETGRDRVTM 537 >gi|311693142|gb|ADP96015.1| diguanylate cyclase [marine bacterium HP15] Length = 497 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 8/158 (5%) Query: 106 IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ L N A+ L Y+ L+I DID FK+IND++GH GD+V+ + Sbjct: 333 TDLLTELPNREAWQERLSFEYNRWQRYSHPLTIGVLDIDLFKRINDSYGHKAGDRVLQLV 392 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + T FV R GGEEF + +A + + LR+ + + P + + Sbjct: 393 AREFRDRLRTTDFVARFGGEEFVVLFPETEPSDARAVVDKLREHVGKLPFHFRGEP-VTV 451 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T SAG+A + ++ RAD+ALY AK +GR++V+ Sbjct: 452 TFSAGLAGFIAGDTEESVFDRADRALYQAKDAGRDQVM 489 >gi|255017618|ref|ZP_05289744.1| hypothetical protein LmonF_07385 [Listeria monocytogenes FSL F2-515] Length = 311 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131 +LL+ Y I K + N +++ + D L+ L N F G + LS+ Sbjct: 120 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSL 178 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190 DID+FK+IND GH G+ V+A S L F R+GGEEFA + Sbjct: 179 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 238 Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247 +AA++A+ R+ +E ++ N +SG +T+S G+A + ++ ADQALY A Sbjct: 239 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 295 Query: 248 KKSGRNRVVC 257 K++GRN++ Sbjct: 296 KQNGRNQIAV 305 >gi|218441038|ref|YP_002379367.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC 7424] gi|218173766|gb|ACK72499.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC 7424] Length = 663 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +S+ N L ++ FDID+FK+ ND +GH GD V+ + Sbjct: 503 DVLTGLYNRRYLEASIVRELHRVSRSNSTLGVILFDIDHFKRFNDTWGHDAGDAVLKAVG 562 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L R GGEEF +S ++ A+ L+ I++ Q++ S IT Sbjct: 563 NLLQESTRESDIACRYGGEEFLIIMPDASLEDTQRRAHQLQIEIKHLQVSTRSQQLESIT 622 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A H ++ AD+ALY AK+ GR+R+VC Sbjct: 623 VSMGVASFPEHGLNYELLLRTADEALYRAKQQGRDRIVC 661 >gi|331007523|ref|ZP_08330688.1| hypothetical protein IMCC1989_1625 [gamma proteobacterium IMCC1989] gi|330418672|gb|EGG93173.1| hypothetical protein IMCC1989_1625 [gamma proteobacterium IMCC1989] Length = 338 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 10/180 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFG 147 +SY Q + D L+GL N A ++ Y + ++ DID+FK INDN+G Sbjct: 145 LSYRDAIQQALSDPLTGLANRGALEQAIAHQWQMAQRYEQHFCVLMLDIDHFKSINDNYG 204 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD V+ ++ + R GGEEF S+ A I+A +R+ + Sbjct: 205 HGVGDNVLKAVAHSISDTTRQTDVAYRYGGEEFVVILNKSALSGALIIAERIRENVAALS 264 Query: 208 INISS--GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 I + + + +TIS G + + ++ +AD+ LY AK +GRNRV FS E NT Sbjct: 265 IPVDTKGKEKVKVTISIGGSCSSYCSDTQDLLRQADKVLYCAKNAGRNRVE-FSSKEGNT 323 >gi|326424362|ref|NP_763132.2| hypothetical protein VV2_1225 [Vibrio vulnificus CMCP6] gi|319999751|gb|AAO08122.2| hypothetical protein VV2_1225 [Vibrio vulnificus CMCP6] Length = 591 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 7/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 QL D ++ L N ++ +++ E L + +ID F++IND+FGHPVGD VI + Sbjct: 434 QLRHQDPMTQLENKASLANTVQRELGKEDLYLAMINIDNFQRINDSFGHPVGDMVIRKTA 493 Query: 160 DQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + F P + + R G EEFA S EA N+L+ I N+++ + +G + Sbjct: 494 QMIRDAFPKPNGLCLARYGSEEFAVLFQSSDPHEAQTQLNELKHAISNTRL-LEAGLPVG 552 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +IS G+ + I A++AL AK G+NRVV F Sbjct: 553 YSISVGLTQLA--PSYHETIENAERALQRAKNLGKNRVVIF 591 >gi|317406245|gb|EFV86489.1| hypothetical protein HMPREF0005_03723 [Achromobacter xylosoxidans C54] Length = 396 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 30/168 (17%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL++ A+ Y LS++ DID+FK+IND GH GD V+ Sbjct: 225 DFLTGLMSRKAWWLQAERYCAQALRTRRPLSLLLLDIDHFKRINDTHGHAAGDAVLRHFG 284 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK--IIENSQINISS----- 212 T +GR+GGEEF ++L D+R ++E +Q + S Sbjct: 285 LLATATLRTGDHLGRVGGEEF------------SVLFADMRSDAVLEVAQRLLDSVRRTP 332 Query: 213 ----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G +I T SAG+ + E + RAD+ LY AK++GRNRV+ Sbjct: 333 CAHGGSTIAYTFSAGVVDWLPGENLQAFFERADRMLYAAKQAGRNRVL 380 >gi|304310423|ref|YP_003810021.1| GGDEF precursor [gamma proteobacterium HdN1] gi|301796156|emb|CBL44362.1| GGDEF precursor [gamma proteobacterium HdN1] Length = 664 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 13/179 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQIND 144 EL I+ ++ + S D L+G+ N L + EKL S++ DID+FKQ ND Sbjct: 472 ELEIANKQLEEQSYTDGLTGIRNRRYLDQFLAREFASARREKLPLSLLLIDIDHFKQFND 531 Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKI 202 +GH VGD + + + V V R GGEEF L S++Q A+ +A +R+ Sbjct: 532 KYGHLVGDDCLRIVGTTINSTVRRETDIVARYGGEEF-CVLLPSTDQAGAVQVAETIRRR 590 Query: 203 IENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS 259 + + + +++ ++ IT+S G+A R + I I ADQALY +K +GRNRV S Sbjct: 591 VHDIEFCVNN-QNVTITVSLGVATRTPERHHDIEHFIAAADQALYSSKHNGRNRVTIES 648 >gi|254456703|ref|ZP_05070131.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207085495|gb|EDZ62779.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 311 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 11/161 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLG------SYNE-KLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++S D L+ + N F L NE L+I+ FDID+FK +NDN GH VGD++ Sbjct: 152 EISTKDHLTKIYNRKKFDELLSFEIKNSKINETSLAIILFDIDHFKHVNDNHGHDVGDRI 211 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + LS+ + R GGEEF S++ ++ A R++IE+ + + Sbjct: 212 LVSLSNLIKTQIRDSDIFARWGGEEFIILMPKSNKVSSSARAEMFRQLIESHSFEVVNN- 270 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IT S G+ ++ ++ R D+ALY AK SGRN + Sbjct: 271 ---ITCSFGVTHYEDEDDEESLFSRVDKALYKAKDSGRNTI 308 >gi|254459429|ref|ZP_05072848.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207083839|gb|EDZ61132.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 304 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 7/176 (3%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVF----FDIDYF 139 + I+ +L + + S +D L+ + N A + L + N+KL F DID F Sbjct: 125 ANEIITQLTTQVKTLEEKSNLDSLTKVFNRRALSTYLKNVCSNDKLHYEFHMLILDIDDF 184 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K IND +GH GDKV+ F+++ L V R GGEEF ++ + N L Sbjct: 185 KNINDRYGHVAGDKVLIFIANILKKTLRDGDKVFRYGGEEFIIILNRIDDEHCKKITNRL 244 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ +++ I G + +T+S G + +++ RAD+ALY AK SG+N++ Sbjct: 245 LDLVRGNKL-IYKGEGLRVTMSIGTTRYAEGDTPDSLVARADKALYKAKNSGKNQM 299 >gi|149377910|ref|ZP_01895638.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter algicola DG893] gi|149357800|gb|EDM46294.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter algicola DG893] Length = 565 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 86/171 (50%), Gaps = 13/171 (7%) Query: 99 RISQLSRI---DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGH 148 R QL+ + D L+GLL HS + + + + D+D+FK++ND GH Sbjct: 394 RARQLNELLIRDSLTGLLKHSFIKHEVDKEHARCRRQSRSSVVAMLDLDHFKKVNDQHGH 453 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQ 207 VGD VI L++ L + +GR GGEEFA + QE ++LA + + S Sbjct: 454 RVGDIVIKALANLLRQRLRSTDMIGRYGGEEFAVVLPECTVQEGQSVLAQVCKTFSDLSF 513 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 N G S+ +T+S GIA E S + ADQALY KK+GRN V F Sbjct: 514 HN--DGVSLSVTLSVGIAALGSFESGSDALNAADQALYERKKAGRNGVTIF 562 >gi|73666930|ref|YP_302946.1| response regulator PleD [Ehrlichia canis str. Jake] gi|72394071|gb|AAZ68348.1| response regulator receiver modulated diguanylate cyclase [Ehrlichia canis str. Jake] Length = 458 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 10/161 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N F I+ + LS++ DID+FK++ND FGH VGD+++ Sbjct: 297 DPLTGCYNRRYFDMHFHNIINESLQKEKNLSLMILDIDHFKEVNDTFGHTVGDELLQQFK 356 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ + R GGEEF ++ A +A + +I+++ S G I+ T Sbjct: 357 KRVSDNIRITDLLARFGGEEFVVILPDTTISTAEQIARRILTVIKDTPFKTSIG-DINKT 415 Query: 220 ISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +S G+ E + + I +I RAD+ LY AK +GRN+VV + Sbjct: 416 VSIGVVEVQKSDVDNIKQLIDRADKCLYEAKNTGRNKVVIY 456 >gi|78222512|ref|YP_384259.1| diguanylate cyclase with GAF sensor [Geobacter metallireducens GS-15] gi|78193767|gb|ABB31534.1| diguanylate cyclase with GAF sensor [Geobacter metallireducens GS-15] Length = 353 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + R ++ D L+GL N F ++ Y LS++ D+D FK+ ND +GHP Sbjct: 177 HERTRLMAITDALTGLYNRRYFQQMFSRELNRAKRYGNPLSLIMMDVDDFKKFNDTYGHP 236 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GDK++ + D L F R GGEEF + A +A LR+ +E ++ Sbjct: 237 LGDKLLGSMGDILTEALRNTDFAFRYGGEEFIVLLPETDFSSALNVAERLRESVEQKSVD 296 Query: 210 ISSGPSIH-ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 G +++ +T+S G+ E ++ D+ LY AK+ G+NRV Sbjct: 297 EMRGIALNAVTVSVGVVSYPQDGETSDDLLNGVDELLYRAKEYGKNRV 344 >gi|330981059|gb|EGH79162.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 298 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 111/232 (47%), Gaps = 19/232 (8%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG--- 87 S+FF FI + A I+L + L + V + L + + S LLG Sbjct: 45 MSVFFVKFIDYIAAAALIWLIMWQMD----LTAVGVNHAPLFYVFLISSTLLGGCLNATF 100 Query: 88 -SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFKQ 141 S++ + + +R +LS D L+ N A ++SL + EK S+ F D+D+FK Sbjct: 101 LSLVMQTMAARDRYQELSETDTLTHAPNRRALVASLNTALACAEKSSLWFAMIDLDHFKS 160 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND GH VGD V+ + L G F GRLGGEEF ++ +A + L + Sbjct: 161 INDTHGHDVGDNVLVGFATLLKGTKGLIAF-GRLGGEEFGVILSAANAIDA---VHALEE 216 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ +Q + + + SAG+A E +S ++ AD+ LY AK++GR Sbjct: 217 LLRRAQKD--EAAQVPYSFSAGVASLSRVETVSDLLKEADENLYHAKRNGRK 266 >gi|311106383|ref|YP_003979236.1| diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310761072|gb|ADP16521.1| diguanylate cyclase, GGDEF domain protein 13 [Achromobacter xylosoxidans A8] Length = 516 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 10/166 (6%) Query: 99 RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +++Q S D L+GL N + +L + +++ DID+FK++ND +GH GD+VI Sbjct: 355 KLNQASITDPLTGLRNRRGTLQAVETLQAAETPFAVIALDIDHFKRVNDTYGHTAGDEVI 414 Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 ++ QL+ P + R GGEEF G+ +EAA +A LR+ E ++ Sbjct: 415 QGMA-QLMRDCSRPTDILCRSGGEEFLILLPGAGAKEAAGMAERLRRRTETHRLK----G 469 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ IT+SAG+A+ + T+ AD ALY AK+ GRNRVV + Sbjct: 470 ALEITVSAGVAQWPAGSADVDTVFQAADAALYAAKQQGRNRVVTHA 515 >gi|296273603|ref|YP_003656234.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296097777|gb|ADG93727.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] Length = 418 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 8/158 (5%) Query: 106 IDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+GLL A+ + + + ++ + +IVFFD+D+FK IND +GH GD V+ Sbjct: 255 IDHLTGLLTRRAYDTEIKTIDKNFERENIQYAIVFFDLDHFKDINDTYGHEGGDTVLKTF 314 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 S L + R GGEEF A +E ++ I+ + N + I + Sbjct: 315 SKILKSQTRENDILARYGGEEFVATVEYKLRREVLQYLKRIKNIVNENSFNYKNNK-IKV 373 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T SAG+ R + I +AD LY AK GRN+++ Sbjct: 374 TFSAGVVLRNDHKTYHDAIQKADILLYQAKNDGRNKII 411 >gi|262403747|ref|ZP_06080305.1| sensory box/GGDEF family protein [Vibrio sp. RC586] gi|262350251|gb|EEY99386.1| sensory box/GGDEF family protein [Vibrio sp. RC586] Length = 628 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIV-----FFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ S+V DID+FK+IND GH Sbjct: 459 NRLRELSEKDSLTDLWNRRKFDQTIHLECAKARRYPSLVQSCFAIVDIDHFKRINDRLGH 518 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ +S + FV R+GGEEFA ++ +EA I+ N +R I S+I Sbjct: 519 DEGDQVLRSVSVAIQSQLRESDFVARIGGEEFAVIFPHTNIEEAEIVLNRVRTYI--SRI 576 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +TIS G+ C P T RAD ALY +K SGRN++ + E Sbjct: 577 HDDG-----VTISGGVTNIC-SNPDQT-YKRADLALYESKSSGRNQISILTHAE 623 >gi|229031686|ref|ZP_04187679.1| Sensory box/GGDEF family protein [Bacillus cereus AH1271] gi|228729570|gb|EEL80557.1| Sensory box/GGDEF family protein [Bacillus cereus AH1271] Length = 430 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y +L+ ID L+ + N F L + +EK++++ FDID FK +ND +GH Sbjct: 261 YQEQERLAMIDSLTEIYNRLKFQQILEAEWDTAMRNDEKIALILFDIDNFKTVNDTYGHD 320 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L++ + R GGEEF + E+EA +A LR IE Sbjct: 321 FGDLALIQLAELMKSKVEQQHVFARWGGEEFIILVTDTVEKEAFQVAESLRFFIETKHF- 379 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 SG S +T S G+A ++ RAD ALY AKK+G+N+V + Sbjct: 380 --SGIS-KLTASFGVALYEQGITREELMQRADIALYEAKKNGKNQVCVY 425 >gi|194290058|ref|YP_002005965.1| di-guanylate cyclase, ggdef domain; transmembrane protein [Cupriavidus taiwanensis LMG 19424] gi|193223893|emb|CAQ69902.1| Putative di-guanylate cyclase, GGDEF domain; transmembrane protein [Cupriavidus taiwanensis LMG 19424] Length = 420 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 94 FISYNRISQL----SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 ++++R+ ++ +R D L+ +L AF L + +++ F D+D+FK I Sbjct: 218 LMAHDRLRRMLERRARHDDLTDVLLRGAFWEELEGACLQAERQRKPMTVAFVDLDHFKAI 277 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD V+ + L G GRLGGEEFA ++ + + L Sbjct: 278 NDVYGHLAGDSVLRHFAGLLRKTLGQGHLAGRLGGEEFAIVMPDTALETGRLACLRLATA 337 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + P I T+S G+A R E ++ RAD+ALY AK GRN Sbjct: 338 VRATPCPSEPDP-IAYTVSIGVAARQPGEGADALMRRADRALYDAKLKGRN 387 >gi|119944877|ref|YP_942557.1| diguanylate cyclase [Psychromonas ingrahamii 37] gi|119863481|gb|ABM02958.1| diguanylate cyclase [Psychromonas ingrahamii 37] Length = 305 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 11/172 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 ++ ++ LS+ID L+G+ N F +L + L++ D+D+FK +ND +G Sbjct: 130 LAEEKVLHLSQIDGLTGIANRRYFDETLENEWKRCARSKQPLTLAMIDVDHFKLLNDTYG 189 Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 H GD + + + L + P R GGEEFA +S +A +A+ L +I Sbjct: 190 HQAGDNSLVMIGNLLKDLAQRPADLCCRYGGEEFAIIMPQTSNAQAVHIASKLITLIAAL 249 Query: 207 QINISSGPSIHI-TISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I P+ I T+S G+A + ++I +AD++LY AKK GRNRV Sbjct: 250 NIPNKKSPTKAILTVSIGLATVLPSQENDTRSLIAKADKSLYRAKKKGRNRV 301 >gi|88811276|ref|ZP_01126532.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Nitrococcus mobilis Nb-231] gi|88791815|gb|EAR22926.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Nitrococcus mobilis Nb-231] Length = 474 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 7/157 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N + L Y LSIV D+D FK IND+ GH GD+V Sbjct: 293 ELASSDNLTGLYNSRKCRADLNYELERHRRYGHPLSIVVLDVDKFKHINDSLGHAEGDRV 352 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + + L R+GGEEF + ++A I+A +R + G Sbjct: 353 LQLIGNVLQESRRKADSAYRIGGEEFLMLLPDTEPKDAWIVATRIRDRLRQKAFETLDGT 412 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + IT+S GIA E RADQA+Y AK+SG Sbjct: 413 RLLITLSGGIAGYRGDETEREFFTRADQAMYEAKRSG 449 >gi|323493699|ref|ZP_08098819.1| GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546] gi|323312039|gb|EGA65183.1| GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546] Length = 606 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 7/170 (4%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGH 148 L I ++ +LS+ D L+ + N A + ++ ++ +I+ D+D FK IND +GH Sbjct: 432 LRIKERQLIKLSQFDPLTNIFNRRALMDAVNIIAAKQSQSSAILMLDLDNFKSINDKYGH 491 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-- 206 GD V+ +++ + + GR+GGEEF ++ + + +A +RK +E + Sbjct: 492 ACGDDVLINVANLIKNEIRSSDIFGRMGGEEFTVVLPDTNLETSLRIAERIRKSVELNLG 551 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I GP IT+S G++ S + +AD+ LY AK SGRN+VV Sbjct: 552 DVLIQYGPPAAITVSIGVS-MWQDGNFSKALAKADKHLYQAKHSGRNQVV 600 >gi|299530612|ref|ZP_07044029.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298721398|gb|EFI62338.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 400 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 34/243 (13%) Query: 28 MIYFSIFFSIFIATVIFIANIFLFYIGLT--------PFYGLEYILVENLSLVIISITIS 79 +++ SI F+ + F + ++ +G + P++ L + + N SL+ + + Sbjct: 154 LLWLSILFTAYT----FTRPVLIWLLGYSDLRSLPSSPYWILTLLSILNFSLLFTVVMTA 209 Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132 + + G + KE ID L+ +LN +F ++ L Y ++++ Sbjct: 210 IAVKETVGKLRKE-----------RDIDALTQILNRRSFQEYAQGRLADLRLY--PMAVL 256 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK+IND +GH GDKV+ +S L V R GGEEF + ++A Sbjct: 257 ACDIDHFKRINDAWGHERGDKVLQLVSAILQSNMREHDLVARFGGEEFVILLTNIALKDA 316 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 +A +++ I +S + SG +T+S G++ + ADQ LY AK +GR Sbjct: 317 EAIARQVQRDIGSSNDILPSG--TRMTMSFGLSSITQAFQFERALKEADQLLYQAKNAGR 374 Query: 253 NRV 255 +RV Sbjct: 375 DRV 377 >gi|217968133|ref|YP_002353639.1| diguanylate cyclase and metal dependent phosphohydrolase [Dictyoglomus turgidum DSM 6724] gi|217337232|gb|ACK43025.1| diguanylate cyclase and metal dependent phosphohydrolase [Dictyoglomus turgidum DSM 6724] Length = 1073 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + I +L+ ID L+G+LN A + YN LS + D+D FK ND +GH Sbjct: 705 FEEIKKLATIDPLTGVLNRRALEEGFNKDVERAKRYNRPLSAIVIDVDNFKLFNDTYGHT 764 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ L+ L VGR GG+EFA ++ + A LA L K I N I Sbjct: 765 FGDQVLRELAKILKNSCRKTDLVGRYGGDEFAIILPETNLEGAIKLAERLLKSIRNLTIT 824 Query: 210 ISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSG 251 + I I IS GIA EP ++ AD A+Y AK SG Sbjct: 825 TPTNNKIPIKISMGIASYPDDTNEP-EKLLTLADIAMYKAKTSG 867 >gi|148360473|ref|YP_001251680.1| two component response regulator [Legionella pneumophila str. Corby] gi|148282246|gb|ABQ56334.1| two component response regulator with GGDEF domain [Legionella pneumophila str. Corby] Length = 377 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/183 (36%), Positives = 92/183 (50%), Gaps = 19/183 (10%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK------LSIVFFDIDYFKQIN 143 KEL I N + +S D LSGL N F + +N LS+V DID FK IN Sbjct: 194 KELLI--NELKVMSITDSLSGLYNRRYFDNIFPQEFNRARRNQYFLSLVSIDIDNFKLIN 251 Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 DN GHP GDKV+ ++D L +F + + RLGG+EFA +E L ++ Sbjct: 252 DNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISLCQIIKNP 311 Query: 203 IENSQINISSGPS-----IHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNR 254 + +N + + H+T+S GIA H E I I AD+ALY AK+ G+N+ Sbjct: 312 FKTENLNHTYDSNEKLLMSHVTLSIGIA-YIHFESSVSIERAITAADKALYQAKRKGKNQ 370 Query: 255 VVC 257 +V Sbjct: 371 IVV 373 >gi|327478672|gb|AEA81982.1| sensory box protein [Pseudomonas stutzeri DSM 4166] Length = 332 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 1/134 (0%) Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 ++ L+ + DID FK+IND GH +GD+V+ ++ V GR+GGEEFAA Sbjct: 197 QFSSSLAFLLLDIDDFKRINDTHGHQMGDQVLQKVARCGAAVLRQSDLFGRIGGEEFAAV 256 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQ 242 G A +A L++ IE +G +T S G+ +P +S + RAD Sbjct: 257 LPGCQPDLAEQIAERLQREIERVVFTAENGERFRVTASLGLTYLKASDPELSAVFARADA 316 Query: 243 ALYVAKKSGRNRVV 256 A+Y AK+ G+N+V+ Sbjct: 317 AMYTAKRLGKNQVI 330 >gi|288942799|ref|YP_003445039.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Allochromatium vinosum DSM 180] gi|288898171|gb|ADC64007.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Allochromatium vinosum DSM 180] Length = 1030 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 11/171 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 R+ QL+ D L+GL N F I +G +++++F D+D FK IND GH GD+ Sbjct: 584 RLHQLAHYDGLTGLANRQFFRQNLSIHLMGPEPAQIAVLFLDLDRFKTINDTLGHAAGDQ 643 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIENSQINIS 211 ++ ++++L V + V R GG+EF A LG +++A + A+ + ++ E + Sbjct: 644 LLRTVAERLRSVLRSEDLVARWGGDEFVVALLGVQDRDAVMHKAADIIARLAEPHPL--- 700 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDI 261 +G SI + S G A + ++ R AD ALY AK +GR F + Sbjct: 701 AGRSIRVPTSIGAALYPEGGTSADLLIRNADLALYRAKSNGRGHCQLFDPV 751 >gi|153938294|ref|YP_001389725.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium botulinum F str. Langeland] gi|152934190|gb|ABS39688.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium botulinum F str. Langeland] Length = 892 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFI----SSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +I L+ D L+GL N I ++ SY NEK +++F D+D+FK IND GH VGD Sbjct: 467 KILGLAYYDSLTGLSNRKKIIETINKTINSYENEKFAVLFIDLDHFKSINDTLGHDVGDY 526 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209 V+ +S + ++ +GRLGG+EF ++ +E+ A + L I+ + + Sbjct: 527 VLEKVSARFKMLLSPKNKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 586 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + G SI I+I + ST++ AD A+Y AKK+G Sbjct: 587 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNG 623 >gi|75909441|ref|YP_323737.1| diguanylate cyclase [Anabaena variabilis ATCC 29413] gi|75703166|gb|ABA22842.1| Putative diguanylate cyclase (GGDEF domain) [Anabaena variabilis ATCC 29413] Length = 295 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 12/173 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 +L +L + + +L+R D L+GL N F+ + S + E L++ + D+D FKQ Sbjct: 104 LLSQLKTTLINLEKLARTDNLTGLTNRGFFLDIVNSEIEKSLRHREPLTLAYVDVDNFKQ 163 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH GD+++ ++ + RLGG+EFA +S + A ++ + L Sbjct: 164 INDQFGHGFGDRLLQIIAKSTTNTLRKIDVIARLGGDEFAILLPRTSYESAEVVLHRLHT 223 Query: 202 IIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ S ++ +T S G I + ++ II AD +Y+AKK G+N Sbjct: 224 VLLASM----KKENLSVTFSIGAITFNNPPKSVAEIIEIADNLMYLAKKKGKN 272 >gi|310659356|ref|YP_003937077.1| hypothetical protein CLOST_2052 [Clostridium sticklandii DSM 519] gi|308826134|emb|CBH22172.1| protein of unknown function [Clostridium sticklandii] Length = 540 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 3/135 (2%) Query: 129 LSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 +S VF DID FK ND +GH GD ++ +S L + ++ GR GGEEF Sbjct: 406 ISCVFLLDIDNFKLYNDYWGHLQGDVCLSMISGALTKLASFGIYAGRYGGEEFLCFTSDI 465 Query: 188 SEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGI-AERCHKEPISTIIYRADQALY 245 +++ A+L ++RK IEN +I + S ++T+S GI A HK +AD+ALY Sbjct: 466 KKRDVAVLGEEIRKSIENLKIPYTREKKSSYVTVSIGISAGNIHKYNYHEHFDKADKALY 525 Query: 246 VAKKSGRNRVVCFSD 260 AK++GRN +V ++D Sbjct: 526 KAKEAGRNCIVLYTD 540 >gi|294340619|emb|CAZ89009.1| hypothetical protein; putative EAL, GGDEF and PAS/PAC domains [Thiomonas sp. 3As] Length = 697 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 12/166 (7%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 L+ D L+GLLN F L ++ D+D FK++ND GHP GD V+A Sbjct: 137 LTERDPLTGLLNRRGFDRRLTMLERHPLGQHGFTLALIDLDDFKRVNDTLGHPAGDAVLA 196 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGP 214 ++D+L + R+GG+EFA + EQ I LR + + QI +G Sbjct: 197 EVADRLKALVRLTDMPARIGGDEFALLMPECRTEEQAVQIGERLLRVMAKPMQI---AGV 253 Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + S G+A +R + + RAD ALY AK +GRNR FS Sbjct: 254 ELWQSCSIGLAVQRGSGRSSTPMFQRADLALYDAKTAGRNRFKLFS 299 >gi|269960537|ref|ZP_06174909.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834614|gb|EEZ88701.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 404 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 5/155 (3%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +++ D L+GL N EK +I DID+FK++NDN+GH GD + +++ Sbjct: 253 RMANQDALTGLWNRRFLFGQACGGCEKRNIAMLDIDFFKKVNDNYGHDGGDAALVMVANI 312 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L + F + + R GGEEF A GS + L +R+ +E + I I +TIS Sbjct: 313 LKIYFPEDV-IARFGGEEFCIQACGSYDDFVTRLEQ-MRQRVEKTPIPYQE-EDIQVTIS 369 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G++ + + I AD LY AK+SGRN+ V Sbjct: 370 VGVSN--IQGNLDQQIKVADDRLYQAKESGRNQTV 402 >gi|266622630|ref|ZP_06115565.1| putative GGDEF domain protein [Clostridium hathewayi DSM 13479] gi|288865636|gb|EFC97934.1| putative GGDEF domain protein [Clostridium hathewayi DSM 13479] Length = 934 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 15/190 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFD 135 L+G+++ ++E + + SRID L+GLLN +A + + + E+ +++ D Sbjct: 363 LMGFVNVKNIEEKKRKELELLRQSRIDPLTGLLNRAACLQEINYLLKENGPEESALLIID 422 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-- 193 +D FK +ND FGH GDKV+A ++ +L +F VGRLGG+EF ++A Sbjct: 423 VDNFKMVNDTFGHMYGDKVLAGIAYKLRDIFDEDAIVGRLGGDEFLIFMFHIPGEDAVCH 482 Query: 194 ---ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 I+A +L+ I + + + SI I S H + +AD AL AK+S Sbjct: 483 KAQIVARELQTIQQEGENQVVVTNSIGIAFSPR-----HGSRFQELYVKADTALRYAKQS 537 Query: 251 GRNRVVCFSD 260 G++ F D Sbjct: 538 GKSCYSVFGD 547 Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 10/130 (7%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLN 114 T F G YI V+N ++ +I + + Y I+ I K Y R+ + D LSGLLN Sbjct: 804 TAFSG--YIGVDNPNINQDTIRLLDTIAYNIANEIKKRRL--YERLEFEAGHDTLSGLLN 859 Query: 115 HSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 S+F+ +K I+ DI+ KQ+N +FGH GD+ I ++ + F Sbjct: 860 RSSFVRYQSEIEKKCGAPCGIITADINGLKQLNQDFGHSRGDETIIEVTRIMRSSFPEGD 919 Query: 171 FVGRLGGEEF 180 + RL G+EF Sbjct: 920 -IFRLSGDEF 928 >gi|58337684|ref|YP_194269.1| regulator components [Lactobacillus acidophilus NCFM] gi|58255001|gb|AAV43238.1| regulator components [Lactobacillus acidophilus NCFM] Length = 367 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GLLN+ AF + ++ S I DID+FKQ+ND +GH G+ V++ S + Sbjct: 207 DDLTGLLNYRAFDEEMQGLSKDESNMPIFIAVLDIDHFKQVNDTYGHLNGNTVLSTFSKK 266 Query: 162 LVVV----FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L + F V R GGEEF + + N + K + G I Sbjct: 267 LKLDIHHNFDPHCAVYRFGGEEFTILIKTKDNTKIIKILNSINKYYSKHPVITDEGQKIF 326 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + S G+ E + E + + RAD+ +Y AKK+GR +++ Sbjct: 327 FSFSGGLTEHHNNEKFTKTLERADELVYQAKKTGRAKIL 365 >gi|262394362|ref|YP_003286216.1| GGDEF family protein [Vibrio sp. Ex25] gi|262337956|gb|ACY51751.1| GGDEF family protein [Vibrio sp. Ex25] Length = 489 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 8/160 (5%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D ++GLLN LG + N SI+ DID+FK +NDN+GH VGD ++ + + Sbjct: 334 DAMTGLLNRRGLDKVLGLFKQENTAFSILALDIDHFKSVNDNYGHDVGDNLLKEFAQLMK 393 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + R GGEEF + A +A +R +E + +T+S G Sbjct: 394 EQARANDHLCRSGGEEFMMFLEATDVHHAVDVAERIRHNVEKHDFLVVG----KVTVSLG 449 Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ + + PI ++ AD ALY AK++GRNR D + Sbjct: 450 VSHWKGNDMPIEAVMKDADNALYKAKRNGRNRTELGEDAQ 489 >gi|261253222|ref|ZP_05945795.1| GGDEF family protein [Vibrio orientalis CIP 102891] gi|260936613|gb|EEX92602.1| GGDEF family protein [Vibrio orientalis CIP 102891] Length = 338 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 110/235 (46%), Gaps = 27/235 (11%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL-GYISGSILKE 92 F +I+ + + +F++ L Y S+V I + L+L + LK+ Sbjct: 116 FVGHYISGEKLMLGLLVFWVSLALIY----------SIVEIRRSHQLILQAHFRQDHLKK 165 Query: 93 LFISYNR----ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQ 141 L S ++L+ D L+G +N + L EK LS ++ DID+FK Sbjct: 166 LNRSLKEQNVHFAELANRDALTGAMNRHSIREWLDVNFEKEANTAKLLSALYLDIDHFKH 225 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND +GH +GD ++ + ++ + R GGEEF G EAA LA +R Sbjct: 226 VNDQYGHGMGDDILREFTMVVLSALSPSERLVRWGGEEFVVFCPGMELSEAAELAERVRH 285 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +E + I + +T S G+A E + ++ RAD+ALY+AK+ GRN+V Sbjct: 286 KVE-AHIWVHGDV---LTTSIGVAS-LGNERTNEMLTRADEALYLAKRKGRNQVT 335 >gi|260596375|ref|YP_003208946.1| hypothetical protein CTU_05830 [Cronobacter turicensis z3032] gi|260215552|emb|CBA27750.1| hypothetical protein CTU_05830 [Cronobacter turicensis z3032] Length = 320 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 6/174 (3%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144 ++++L ++ LS +D L+GL N F +L +L ++ DID+FK ND Sbjct: 140 KMVQKLIDEKATLNDLSMMDPLTGLCNRRGFQNRFDNLPPDAGQLFVLLMDIDHFKAYND 199 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 ++GH +GD+ + +S + + V R GGEEF + E A + A +R+ + Sbjct: 200 HYGHMMGDQALTRVSAAIRDAVRSRDIVTRYGGEEFMVLLTEADEARARLAAERIRQRVY 259 Query: 205 NSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +I + + ++T+S GIA + + I + RAD+ALY AK GRN ++ Sbjct: 260 DLRIPHMFNESVATNVTLSIGIAPLENGD-IDDALRRADEALYAAKDKGRNHIL 312 >gi|113969041|ref|YP_732834.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113883725|gb|ABI37777.1| diguanylate cyclase [Shewanella sp. MR-4] Length = 482 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 8/141 (5%) Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 H A S+ G+ + +V DID+FK+IND GH VGD ++ LS L V R Sbjct: 343 HRAAASTQGA----ICLVMLDIDFFKEINDTLGHSVGDTILMELSSVLQHCVRESDVVAR 398 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 GGEEF +S + L + I+++ SG + +T S GIA+ EP+ Sbjct: 399 WGGEEFVILCHNTSLEAVKSLCQRIATAIKDNHF---SG-DVRLTCSFGIAKLAANEPMQ 454 Query: 235 TIIYRADQALYVAKKSGRNRV 255 + RAD+ALY AK GR+++ Sbjct: 455 SCFERADKALYQAKAQGRDQI 475 >gi|149928140|ref|ZP_01916386.1| hypothetical protein LMED105_10995 [Limnobacter sp. MED105] gi|149823125|gb|EDM82363.1| hypothetical protein LMED105_10995 [Limnobacter sp. MED105] Length = 323 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 8/167 (4%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 S + Q + D L+ LN A + + + + + F D+D FK +ND GH VGD Sbjct: 155 SSKSLRQENLTDPLTRSLNRKALEAAVWRMLNAKDPFVLSFLDLDNFKMVNDTLGHAVGD 214 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINIS 211 K++ +S +L V V RL G+EF +LG+S QE A L +R I + I+ + Sbjct: 215 KLLKRISTKLSVRLRAEDKVYRLSGDEFVVLSLGNSRQEMAENLGQRIRAAIAEA-IDYT 273 Query: 212 SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 P + ++ S G+ + E +S ++ RADQ +Y AKK+G+N+V+ Sbjct: 274 C-PDLPVSASVGVLQVLAFEDVSLEKLLARADQLMYQAKKTGKNQVL 319 >gi|149203747|ref|ZP_01880716.1| diguanylate cyclase [Roseovarius sp. TM1035] gi|149142864|gb|EDM30906.1| diguanylate cyclase [Roseovarius sp. TM1035] Length = 479 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 6/137 (4%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 E +++ D+D+FKQ+ND GH GD+V+ ++ L + R+GGEEF Sbjct: 336 GESFAVMLADLDFFKQVNDRHGHAAGDRVLCEVTHHLRAHLREGDMLARIGGEEFLIVTP 395 Query: 186 GSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGI--AERCHKEPISTI---IYR 239 +S + A A+ L +I + I ++SG +H+TIS G+ A P +++ + Sbjct: 396 ATSRRRAQRTADRLCAMIAQTPIPLASGLAPLHVTISIGVTMATPAPSRPAASVGQLLEE 455 Query: 240 ADQALYVAKKSGRNRVV 256 AD+ALY AK GRN V Sbjct: 456 ADRALYAAKAQGRNMVT 472 >gi|50120392|ref|YP_049559.1| putative signaling membrane protein [Pectobacterium atrosepticum SCRI1043] gi|49610918|emb|CAG74363.1| putative signaling membrane protein [Pectobacterium atrosepticum SCRI1043] Length = 357 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 10/181 (5%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134 LGY++ + +L + ++S D ++ L N + L Y ++V F Sbjct: 175 LGYVTYTTALKLAEHKRMLMEVSIHDGMTSLYNRHHWERLLKHEYEICQRYKRIATLVLF 234 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK NDNFGH VGD+ I L+ +L F +GR GG+EFA +S +A Sbjct: 235 DIDHFKAFNDNFGHNVGDQAILLLARELTSGFRETDVIGRFGGDEFAVILPQTSAGDALD 294 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 N +R+ + +N + P + + +S GIAE + AD ALY AK GR Sbjct: 295 AVNRIRESLSLKFLNQT--PQLAVFVSVGIAEISPDMGQYIDWLKAADMALYRAKNKGRR 352 Query: 254 R 254 R Sbjct: 353 R 353 >gi|330966967|gb|EGH67227.1| GGDEF domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 528 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 85/170 (50%), Gaps = 11/170 (6%) Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND+FGH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A + + I + QI + P + Sbjct: 396 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAESILQAIRDEQITHPASPFGIV 455 Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A IS +I AD+ALY AK GRNRV S+I NT Sbjct: 456 TVSLGVATVIGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIALNT 505 >gi|283784201|ref|YP_003364066.1| signal transduction protein [Citrobacter rodentium ICC168] gi|282947655|emb|CBG87210.1| putative signal transduction protein [Citrobacter rodentium ICC168] Length = 366 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 25/206 (12%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 LV L+L ++ I LL +S I L R+ +S D ++G+ N + L + Sbjct: 167 LVGWLTLPVMVI-YPLLFARLSYQIATRLAEHKRRLQIMSSRDGMTGVYNRRHWEQLLRN 225 Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG Sbjct: 226 EFELCRRQHRECTLLIIDIDHFKDINDTWGHDVGDEAIQALTRQLRTTLRSSDVIGRFGG 285 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTI 236 +EFA G+ E+AI A + ++ E + ++ P + + IS G+A P++ Sbjct: 286 DEFAVIMCGTPA-ESAIAA--MSRVHEGLRALRLACAPQVILHISVGVA------PLTPQ 336 Query: 237 I--YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 337 FGHYREWLKSADLALYKAKNAGRNRT 362 >gi|167622741|ref|YP_001673035.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167352763|gb|ABZ75376.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 374 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 12/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 K+L + R L+ ID L+ + N F L N+ LSI+ D+D+FK +N Sbjct: 201 KKLLQQFKR---LAMIDGLTNISNRRHFDEVLTQEIKASLRNNKPLSIIMVDVDFFKPLN 257 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D+ GH VGDK + ++ L P V R GGEEF A + A +A +++ Sbjct: 258 DSLGHQVGDKYLKRIAGVLNSALERPRDLVARYGGEEFVIALPDTDLSGATQVAEKIKQA 317 Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I ++++ + SG S IT+S GIA+ + ++ AD LY AK +GR+ Sbjct: 318 IADTELAHPGSGVSDFITVSQGIAQWHEGMEPAQLLETADSLLYQAKSAGRD 369 >gi|254241999|ref|ZP_04935321.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|126195377|gb|EAZ59440.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 785 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 101/186 (54%), Gaps = 22/186 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 ++L +L ++ + Q++R D L+GL N +AF + + + L+++F D+D+FK Sbjct: 331 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 390 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199 +IND+ GH GD+++ +S+++ V V R G+EF A + + EA IL+ L Sbjct: 391 RINDSLGHDSGDELLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 450 Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253 +K+ E ++ G ++ +T+S G++ E+C + ++ A AL+ +K GRN Sbjct: 451 QKMKEPIALD---GRTLVMTVSVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 502 Query: 254 RVVCFS 259 FS Sbjct: 503 NAQFFS 508 >gi|310823687|ref|YP_003956045.1| response regulator/ggdef domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|309396759|gb|ADO74218.1| Response regulator/GGDEF domain protein [Stigmatella aurantiaca DW4/3-1] Length = 348 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 15/184 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 KEL + LSR D L+ L N F L Y LS+V DID+FK+IN Sbjct: 166 KELARKREELLTLSRTDPLTSLSNRRYFEERLAEEFARARRYRSPLSLVMLDIDHFKRIN 225 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GHP GD+V+ ++ + R GGEE A +S +A +R+ I Sbjct: 226 DTYGHPFGDEVLRAVALVSRTRLREVDLLARYGGEELIALLPETSPADALRACERVREAI 285 Query: 204 ENSQIN--ISSGPSIHI--TISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 E+ +++ S G S + T S G+A P+ T ++ AD+ LY AK++GRNRV Sbjct: 286 ESLRLDYRASDGTSQKVSCTASLGLAS-LPSVPLQTAEDLLRAADECLYKAKEAGRNRVR 344 Query: 257 CFSD 260 + + Sbjct: 345 QYEE 348 >gi|300866972|ref|ZP_07111644.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] gi|300335076|emb|CBN56810.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] Length = 559 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 18/188 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDID 137 + + L + + +L+ +D L+GL N F + SL + +S++ D+D Sbjct: 369 QSQLYQRLEAANGELQRLASLDGLTGLANRRQFDEYLEYEWLRSLRNGG-SISLILCDVD 427 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILA 196 +FK ND +GH GD+ + +++ + P F R GGEEFA + +Q A +A Sbjct: 428 FFKLYNDTYGHQAGDECLKKVAEAINEARQQPGDFAARYGGEEFAVILPCAEKQRALEVA 487 Query: 197 NDLRKIIENSQI-NISSGPSIHITISAGIAERCHK--EPISTI-----IYRADQALYVAK 248 D+R+ I QI + +S S +++S G+A K +P+S++ I AD+ALY AK Sbjct: 488 EDIRRRIAVLQIPHATSKVSEFVSVSLGVANFVGKQWQPVSSVSREGLIAMADKALYQAK 547 Query: 249 KSGRNRVV 256 + GR+R V Sbjct: 548 QEGRDRTV 555 >gi|239908384|ref|YP_002955126.1| putative signaling protein [Desulfovibrio magneticus RS-1] gi|239798251|dbj|BAH77240.1| putative signaling protein [Desulfovibrio magneticus RS-1] Length = 519 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 89/181 (49%), Gaps = 17/181 (9%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145 L S R+++ S +D L+G+ N F +L + LS+V DID+FK ND Sbjct: 339 LTASNKRLAEQSLLDGLTGIANRRRFDEALAREYRRHARGGASLSLVLIDIDHFKAFNDR 398 Query: 146 FGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 +GH GD + +A + Q V G V R GGEEFA + AA +A LR+ Sbjct: 399 YGHLHGDACLRQVAGVLRQNVTRAGD--LVARYGGEEFACILAETDAPSAAAMAERLRQA 456 Query: 203 IENSQINISSGPS-IHITISAGIAE-RC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I + P+ +TIS G A RC P+ ++ RAD+ LY AK +GR++ Sbjct: 457 VAALDIPHEASPTACRVTISCGAATVRCLPGGSPLE-LLARADEQLYRAKAAGRDQAAAE 515 Query: 259 S 259 S Sbjct: 516 S 516 >gi|209550345|ref|YP_002282262.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536101|gb|ACI56036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 782 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 14/178 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL S +R + + D L+GLLN F I++ + ++L+ +F D+D FK IND Sbjct: 335 ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGQELACLFVDLDRFKWIND 394 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203 N GH GD + L ++L RLGG+EFA +E+ A ++ + I Sbjct: 395 NMGHAAGDMALIELVERLKTYLAPSDEAARLGGDEFAILLPAKDAEKRARMMCEQIASIF 454 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSD 260 E P +H++ S GIA H + ++ ++D A+Y K+ G+N F + Sbjct: 455 ET-----PFAPDMHLSASVGIAIYPHHAATAAELLQKSDLAMYAKKRDGKNGAQLFDN 507 >gi|330954907|gb|EGH55167.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7] Length = 392 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 166 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 215 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 216 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITSGGGKAYRYGG 275 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + E +R+ I N +I N S P S+ + Sbjct: 276 EEFAIVFAAKTIDECMPHLEAIRETIANYEIQLRNKDSRPQDDQQGRQRRSGAQSGSVSV 335 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 336 TVSIGVAERQPEHRTP-EEVLKCADQALYAAKGAGRNCVVAYGQLNRR 382 >gi|330876267|gb|EGH10416.1| GGDEF domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 528 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 85/170 (50%), Gaps = 11/170 (6%) Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND+FGH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERNMLSLILMDADHFKRYNDHFGHLAGDECLVALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A + + I + QI + P + Sbjct: 396 RLVEQCIRRPGDVAARYGGEEIAVVLPGTDEASARQVAESILQAIRDEQITHPASPFGIV 455 Query: 219 TISAGIAERC-HKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A IS +I AD+ALY AK GRNRV S+I NT Sbjct: 456 TVSLGVATVIGSNRQISQRGLIELADRALYAAKSQGRNRVNVASEIALNT 505 >gi|323174664|gb|EFZ60284.1| cellulose synthesis regulatory protein domain protein [Escherichia coli LT-68] Length = 178 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N A ++ S++ D+D+FK IND FGH GD+V++ + Sbjct: 15 DTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAA 74 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + GR+GGEEF G+S EAA +A +R + ++ I+ +I I+ Sbjct: 75 GLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRIS 134 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+ +E + AD+ LY+AK++GRNRV Sbjct: 135 ASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRV 172 >gi|255320754|ref|ZP_05361929.1| diguanylate cyclase [Acinetobacter radioresistens SK82] gi|262379470|ref|ZP_06072626.1| diguanylate cyclase [Acinetobacter radioresistens SH164] gi|255302131|gb|EET81373.1| diguanylate cyclase [Acinetobacter radioresistens SK82] gi|262298927|gb|EEY86840.1| diguanylate cyclase [Acinetobacter radioresistens SH164] Length = 524 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 8/151 (5%) Query: 107 DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N FI + + SI+ D+DYFK+IND +GH GD V+ ++ L Sbjct: 373 DPLTGLYNRRGIDIFIKEMVDNHTPFSILLIDVDYFKKINDTYGHIQGDIVLKQIAGHLR 432 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 F R GGEEFA ++ A LRK IE++ N+ SGP +TIS G Sbjct: 433 TNFRKDDICCRCGGEEFAVLMPTIDKKAVYNSAERLRKKIESNITNL-SGP---VTISIG 488 Query: 224 IAERCHKEPISTIIYR-ADQALYVAKKSGRN 253 IA + +++ AD LY AK+ GRN Sbjct: 489 IAYWPESSKSTEEVFKIADHYLYQAKREGRN 519 >gi|307152361|ref|YP_003887745.1| PAS/PAC sensors-containing diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306982589|gb|ADN14470.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 7822] Length = 302 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 5/173 (2%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 SI ELF ++ ++ L + L H L SY+ I+F D+D FKQINDN+G Sbjct: 133 SIKGELF--FDPLTHLGNRKLIRIELEHK--FEHLYSYSIPFGILFIDLDDFKQINDNYG 188 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GDK++ + L + V R GG+EF + I+AN + I+ S Sbjct: 189 HNIGDKILIMAAKTLSNILRNMDIVARWGGDEFLVIIPNIDSKHLKIIANRISSFIKESW 248 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I + + IT S G ++ I ++I RAD+ +Y +K GRNRV D Sbjct: 249 L-IINDKKVGITASIGGTMAKKEDTIESLIERADREMYKSKMLGRNRVSLSED 300 >gi|152992643|ref|YP_001358364.1| hypothetical protein SUN_1050 [Sulfurovum sp. NBC37-1] gi|151424504|dbj|BAF72007.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 370 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 11/168 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+ L N F I S E L+ D+DYFKQ ND +GH GD Sbjct: 201 LEKLSITDTLTSLYNRRFFEEIFPRQILKAKSNKEFLTFFTLDLDYFKQYNDTYGHQKGD 260 Query: 153 KVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + +++ L VF + ++ R+GGEEFA L L N + + + +I S Sbjct: 261 WALKQIAETLKEVFNKSDDYIFRMGGEEFAGIILDEDIANIHALINTVMEKLNEKEIEHS 320 Query: 212 SGPSIHI-TISAGIAERCHKEPIS-TIIYR-ADQALYVAKKSGRNRVV 256 P +I T S G+ + ++ ++ IYR AD++LY AK+ GRN+VV Sbjct: 321 GNPDTNILTCSIGVYIQAPEDGLNHQEIYRLADESLYKAKRKGRNQVV 368 >gi|157377541|ref|YP_001476141.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157319915|gb|ABV39013.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 485 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 103 LSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ D L+G+ N F ++ +E +SI+ DID FK++ND +GH +GD VI Sbjct: 323 MASTDKLTGVANRQIFEEYFAKAMAEADESETPVSIILLDIDLFKRVNDTYGHNIGDLVI 382 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S L V R GGEEF A +A +R I +I ++ Sbjct: 383 KTVSSVLKNQLREKDVVCRWGGEEFLLLLPNLELSHAVDVAERIRGKIAKRKIRVNE-HE 441 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S+G+AE H E + +I RAD ALY AK+ GR++VV Sbjct: 442 ICVTVSSGVAEYNHTEKPNELINRADVALYQAKELGRDQVV 482 >gi|114049224|ref|YP_739774.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113890666|gb|ABI44717.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 391 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 8/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 ++I L+ D L+GL N A L + NE S++ DID+FKQIND +GH + Sbjct: 220 SKIKILAERDQLTGLWNRHAMQKRLATIHQLWQKNNEPYSVILLDIDHFKQINDQYGHAI 279 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + + V + R GGEEF ++ + A +A+ L +++ + + Sbjct: 280 GDLALLTAARLFSTVLREHDVLCRHGGEEFLVLLPATNARAARTVADKLHRVLRENPLQ- 338 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G I + S G A ++ AD A+Y AK GR+R+ Sbjct: 339 CQGQEIQLYASIGYATIYRGCESDKLLIEADHAMYQAKSEGRDRI 383 >gi|310779466|ref|YP_003967799.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] gi|309748789|gb|ADO83451.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] Length = 646 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 17/169 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + LS D L+GL N F + E+L I+ D D FKQ+NDNFGH GD Sbjct: 478 LKTLSVTDHLTGLYNRRYFYEKFHADWRKARDNKERLYIILVDFDNFKQVNDNFGHHSGD 537 Query: 153 KVIAFLSDQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 + + S +F + + +VGR GG+EF E++ + ++RK IE +I Sbjct: 538 RALIEASK----IFSSELKEGYVGRYGGDEFVGGVRSKDEKKVIGIGENIRKKIEQLKIP 593 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVV 256 I+ +T+S GI + + Y + D+ALY AK++GRN + Sbjct: 594 INKNGE-QLTVSVGIFGVVPEGDLDLRRYFVKVDKALYTAKRNGRNMIT 641 >gi|262375960|ref|ZP_06069191.1| WspR [Acinetobacter lwoffii SH145] gi|262309054|gb|EEY90186.1| WspR [Acinetobacter lwoffii SH145] Length = 423 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 10/171 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147 I N + LS+ D L+ + N F +L + E+ L+I+F D+D+FK ND +G Sbjct: 238 IHTNELLHLSQYDELTKISNRRTFDETLQVHFERAHREETALAILFIDVDFFKNYNDFYG 297 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD VI+ ++ + FV R GGEEF + A +A+++ K I+ + Sbjct: 298 HQKGDDVISTIAKTIKNAIRHMDFVARYGGEEFVVLLPETDAHGAYAVASNIFKAIDRLE 357 Query: 208 I-NISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255 I + S + HITIS GI ++ I ++ ADQALY AK+ GRN++ Sbjct: 358 IPHEKSLVAKHITISLGITVYRGEDDIDKDALLGIADQALYRAKQLGRNQI 408 >gi|192361108|ref|YP_001982137.1| hypothetical protein CJA_1657 [Cellvibrio japonicus Ueda107] gi|190687273|gb|ACE84951.1| conserved domain protein [Cellvibrio japonicus Ueda107] Length = 239 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 9/179 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 +L EL + R D L+GL N+ F +L E+ LS+V D+DYFK Sbjct: 25 QLLGELQQQVRDLQAQVRTDALTGLYNYRFFSDTLLLEMERTRRSFQPLSLVLLDLDYFK 84 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND +GH G++ + L+ + F R GGEEFA + + A +A +R Sbjct: 85 AFNDRWGHDAGNQALVHLAGVVNQGLRKLDFACRYGGEEFALILPNTDLRHAVSVAERVR 144 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 +++ +S + + +G + +T S G+ E + E R D LY AK +GRNRV C Sbjct: 145 ELLVSSPLIMPTGETCALTASFGVDEFAGQLNESPEEFTRRVDYWLYQAKLTGRNRVAC 203 >gi|168184847|ref|ZP_02619511.1| putative diguanylate cyclase [Clostridium botulinum Bf] gi|237793677|ref|YP_002861229.1| putative diguanylate cyclase [Clostridium botulinum Ba4 str. 657] gi|182672126|gb|EDT84087.1| putative diguanylate cyclase [Clostridium botulinum Bf] gi|229261773|gb|ACQ52806.1| putative diguanylate cyclase [Clostridium botulinum Ba4 str. 657] Length = 892 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 14/170 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +I L+ D L+GL N I ++ NEK +++F D+D+FK IND GH VGD Sbjct: 467 KILGLAYYDSLTGLSNRKKIIETINKTISNYANEKFAVLFIDLDHFKSINDTLGHDVGDY 526 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209 V+ +S + ++ +GRLGG+EF ++ +E+ A + L I+ + + Sbjct: 527 VLEKVSARFKMLLSPKHKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 586 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + G SI I+I + ST++ AD A+Y AKK+G + +S Sbjct: 587 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNGGYKYEVYS 631 >gi|157964306|ref|YP_001499130.1| response regulator PleD [Rickettsia massiliae MTU5] gi|157844082|gb|ABV84583.1| Regulatory components of sensory transduction system [Rickettsia massiliae MTU5] Length = 456 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N F I + KL ++ DID FK +ND +GH GDKV+ Sbjct: 293 LAAKDGLTGLFNRRYFDIHLKQMIEKANKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVL 352 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214 +S L + R GGEEF +A A +R IE +I Sbjct: 353 TIVSRILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMDFHIEDQIE 412 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + TIS G+ + +E I + I RAD+A+Y AK +G+N+VV Sbjct: 413 PLKNTISIGVTKYKKEESIESFIERADKAMYEAKTTGKNKVV 454 >gi|78355124|ref|YP_386573.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217529|gb|ABB36878.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 411 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 12/160 (7%) Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 +D L+ + + A ++ + D+D+FK ND +GH VGD V+ ++ +L V Sbjct: 251 VDELTEVPSRRALMADAKKLGGSYCVAMADVDHFKAFNDTYGHDVGDDVLRMVAARLAGV 310 Query: 166 FGTPMFVGRLGGEEFAA--AALGSSEQEA-------AILANDLRKIIENSQINISSGPSI 216 G ++ R GGEEF LG +E A+ A R N + S+ Sbjct: 311 DGGKVY--RYGGEEFTILFPRLGRAEARPHLEAVREAVAAIPFRIRTRNKSAKVVRDKSV 368 Query: 217 HITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 +T+S G+A+R E +++ +AD+ALY AKK+GRN+V Sbjct: 369 TVTVSIGLAQREDGEDDFESVLKKADKALYKAKKAGRNKV 408 >gi|33592539|ref|NP_880183.1| hypothetical protein BP1441 [Bordetella pertussis Tohama I] gi|33572185|emb|CAE41731.1| probable membrane protein [Bordetella pertussis Tohama I] gi|332381957|gb|AEE66804.1| hypothetical protein BPTD_1425 [Bordetella pertussis CS] Length = 385 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 35/246 (14%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL--------------SLVIISI 76 +S +F+ ATV + + T YGL+ + L LV+ S+ Sbjct: 149 YSYWFAGVTATVAALGHALR-----TAVYGLQIEQTQGLLQSSVWNVAFLAIGVLVMPSM 203 Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129 T+ +++ I +L E N+ D L+GLL+ A+ + L Sbjct: 204 TLGMIM-MIHDRMLAEREREANQ-------DFLTGLLSRKAWWREGERLCARALRTGRPL 255 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DID FKQ+ND GH GD V+ + + +GRLGGEEF A + Sbjct: 256 TLLALDIDRFKQVNDQHGHAAGDVVLRHFGSLATALLRSGDVIGRLGGEEFVALLPDTDG 315 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +A L + + + G ++ T S G+A+ + + ++ RAD ALY AK+ Sbjct: 316 DTGVSVAERLLASVRATPCS-HGGKALTYTFSGGVAQYRAGDTLPVLVERADAALYAAKQ 374 Query: 250 SGRNRV 255 +GR+R+ Sbjct: 375 AGRDRI 380 >gi|13472065|ref|NP_103632.1| hypothetical protein mll2240 [Mesorhizobium loti MAFF303099] gi|14022810|dbj|BAB49418.1| mll2240 [Mesorhizobium loti MAFF303099] Length = 357 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 8/169 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDN 145 I +E +S +R+ L+ D ++GL N + F + L + +++ D+D FK +ND Sbjct: 175 ITEEKILS-DRMRYLAEFDPMTGLANRARFQARLAQPDASRPLGALLLIDLDGFKAVNDT 233 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH VGD+ + +++L G V R+GG+EF A LGS AA+ + R+IIE Sbjct: 234 FGHVVGDECLKAAAERLAEGCGEADLVARVGGDEF-AVLLGSHLDRAAV-SGVAREIIEG 291 Query: 206 -SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + G S+ + S GIA P + +AD ALY AK +GRN Sbjct: 292 MGKPVVVRGQSLRLGASVGIAFAGQGAPCD-LFAQADTALYAAKAAGRN 339 >gi|84393675|ref|ZP_00992425.1| putative sensory box/GGDEF family protein [Vibrio splendidus 12B01] gi|84375674|gb|EAP92571.1| putative sensory box/GGDEF family protein [Vibrio splendidus 12B01] Length = 596 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/183 (38%), Positives = 90/183 (49%), Gaps = 24/183 (13%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLS-IVFFDIDY 138 S+ KEL + R+ LS D LS L N F L Y NE + + DID Sbjct: 422 SVRKELEV---RLRILSERDSLSNLWNRRKFEEQLAYYSRLVERYPNEATTCLALVDIDN 478 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+IND GH GD+VIA ++ L FV R+GGEEFA +S EA + + Sbjct: 479 FKRINDELGHDEGDRVIASVARLLQDSLRNTDFVARVGGEEFALLMPHTSLPEAKRVLDR 538 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-V 256 LR IE +SSG +T+S G + ST Y+ AD LY +K SGRN V + Sbjct: 539 LRIEIE-----LSSG--TKVTVSVGFTDLTSN---STRSYKCADVGLYESKSSGRNTVSM 588 Query: 257 CFS 259 C S Sbjct: 589 CPS 591 >gi|68171699|ref|ZP_00545057.1| GGDEF [Ehrlichia chaffeensis str. Sapulpa] gi|88657972|ref|YP_507571.1| response regulator PleD [Ehrlichia chaffeensis str. Arkansas] gi|67998880|gb|EAM85574.1| GGDEF [Ehrlichia chaffeensis str. Sapulpa] gi|88599429|gb|ABD44898.1| putative response regulator/diguanylate cyclase [Ehrlichia chaffeensis str. Arkansas] Length = 458 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 10/161 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N F ++ ++ LS++ DID+FK++ND FGH VGD+++ Sbjct: 297 DPLTGCYNRRYFDMHFHNIVNESLQKDKNLSLMILDIDHFKEVNDTFGHTVGDELLQQFK 356 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ + R GGEEF ++ A +A + +IE + S G I+ T Sbjct: 357 KRVSDNIRITDLLARFGGEEFVVILPDTTITTAEQIATRILSVIEETPFKTSIG-DINKT 415 Query: 220 ISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCF 258 +S G+ E + I ++ RAD+ LY AK +GRN+VV + Sbjct: 416 VSIGVVEVQQSDINNIKQLVDRADKCLYEAKNTGRNKVVTY 456 >gi|229529554|ref|ZP_04418944.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|229333328|gb|EEN98814.1| GGDEF family protein [Vibrio cholerae 12129(1)] Length = 443 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G+LN AF L N KL+++FFD+D FK+IND GH VGD V+ Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214 ++ +L F GRLGG+EF Q+ + + N +++E Q + + Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFLVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386 Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S+ I +S G+A E+ + P ++ AD+A+Y AK N V C Sbjct: 387 SLEIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430 >gi|146280455|ref|YP_001170608.1| sensory box protein [Pseudomonas stutzeri A1501] gi|145568660|gb|ABP77766.1| sensory box/GGDEF domain protein [Pseudomonas stutzeri A1501] Length = 269 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 1/129 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK+IND GH +GD+V+ ++ V GR+GGEEFAA G Sbjct: 139 LAFLLLDIDDFKRINDTHGHQMGDQVLQKVARCGAAVLRQSDLFGRIGGEEFAAVLPGCQ 198 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 A +A L++ IE +G +T S G+ R +S + RAD A+Y A Sbjct: 199 PDLAEQIAERLQREIERVVFTAENGERFRVTASLGLTYLRASDAELSAVFARADAAMYTA 258 Query: 248 KKSGRNRVV 256 K+ G+N+V+ Sbjct: 259 KRLGKNQVI 267 >gi|187477525|ref|YP_785549.1| signaling/response regulator protein [Bordetella avium 197N] gi|115422111|emb|CAJ48635.1| putative signaling/response regulator protein [Bordetella avium 197N] Length = 336 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 11/177 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEK--LSIVFFDIDYFKQIN 143 ++L + + +L+ D L+GL N L + Y E+ +S++ D+D+FK N Sbjct: 156 QKLLETNMELRRLTNSDGLTGLGNRRYLDEYLAAEWARAYREQHEISLLMIDVDHFKLFN 215 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD+ + ++ ++ R GGEEFA G + A + A LR+ Sbjct: 216 DLYGHIAGDEALKRVATAILACCDRSTDLAARFGGEEFAMVLPGKAAGSARLTAEKLRRS 275 Query: 203 IENSQI-NISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256 +E Q+ + SG +T+S G++ + +P + +I +AD+ LY AK+ GRNRVV Sbjct: 276 VEAMQLPHEGSGAGSWLTVSIGVSTVTPRNGQPFTDLIEQADRGLYEAKRQGRNRVV 332 >gi|71280809|ref|YP_268663.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71146549|gb|AAZ27022.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea 34H] Length = 692 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 21/188 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQI 142 + E + S I + D L+ L N S ++ NEK++++F D+D FK+I Sbjct: 252 ISEQYKSAEIIRHQAYFDTLTSLPNRFLALDRLSQMLTEAERNNEKIAVLFLDLDDFKKI 311 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--ILANDLR 200 ND+ GH +GDKV+ + +L V VGRLGG+EF G +E A I N L+ Sbjct: 312 NDSLGHEIGDKVLIQSAHRLKQVLREGDTVGRLGGDEFIVLLRGVTENHDALVITENLLK 371 Query: 201 KIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E I+ G + +T+S G+A RC S ++ AD A+Y AK GRN Sbjct: 372 SFREPFVID---GRELMLTLSIGVAISPENGRC----ASDLLRNADTAMYKAKDLGRNTY 424 Query: 256 VCFSDIEN 263 FS N Sbjct: 425 SFFSKKMN 432 >gi|304310950|ref|YP_003810548.1| probable diguanylate cyclase (GGDEF domain) [gamma proteobacterium HdN1] gi|301796683|emb|CBL44895.1| probable diguanylate cyclase (GGDEF domain) [gamma proteobacterium HdN1] Length = 420 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 17/190 (8%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131 L LG+ ++L+++ ++ L+ D L+GL N + ++ EK+ + Sbjct: 233 DLYLGF--NAMLEKIRERDEQLRLLATTDALTGLANRRHAMETMEVMVERSRRTGEKIGV 290 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + D+D+FK+IND FGH VGD V+ L L R GGEEF + + Sbjct: 291 ILLDVDHFKKINDTFGHHVGDAVLIGLGKTLQSCARRYDLAVRWGGEEFLLLCDNADLET 350 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-----TIIYRADQALYV 246 A +A +R+ + + +T+S G+ C + PI+ ++ +AD+ALY Sbjct: 351 TAGIAERVRQSVAVQSFETGDRMCLGVTVSLGV---CSEVPIAQAAVDKMLEKADRALYR 407 Query: 247 AKKSGRNRVV 256 AK+SGRN+V Sbjct: 408 AKESGRNQVA 417 >gi|283851320|ref|ZP_06368602.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] gi|283573270|gb|EFC21248.1| diguanylate cyclase [Desulfovibrio sp. FW1012B] Length = 356 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 29/182 (15%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +S D L+G+ N AF + +G + LS+ DID+FK+ ND GH +GD+ + Sbjct: 172 MSLTDGLTGIHNRRAFDAHIGRAVARAVAERRPLSLFMCDIDHFKRFNDEHGHRIGDQAL 231 Query: 156 AFL-------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE---- 204 + ++++ + +F R GGEEF A + EA LA +R+ IE Sbjct: 232 VVVGSILKGFAEEMKQLEDRDIFPARYGGEEFTVALADIEKDEAEELAEIIRRKIERYNF 291 Query: 205 -----NSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + QI ++SG I I +S G+AE C I ++ AD+ LY+AK SGRN+V Sbjct: 292 VIRDPDGQI-LASG--IKINVSIGVAELLTDCPVADIDHLVDAADKGLYLAKSSGRNQVR 348 Query: 257 CF 258 + Sbjct: 349 AY 350 >gi|258621533|ref|ZP_05716566.1| GGDEF family protein [Vibrio mimicus VM573] gi|258627548|ref|ZP_05722325.1| GGDEF family protein [Vibrio mimicus VM603] gi|258580130|gb|EEW05102.1| GGDEF family protein [Vibrio mimicus VM603] gi|258586151|gb|EEW10867.1| GGDEF family protein [Vibrio mimicus VM573] Length = 443 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 85/168 (50%), Gaps = 19/168 (11%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GLLN AF L N KL+++FFD+D FK+IND GH VGD V+ Sbjct: 269 LSERDSLTGLLNRRAFKQQLSQALVKAKRSNLKLALLFFDLDKFKEINDTKGHEVGDIVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAA------ALGSSEQEAAILANDLRKIIENSQIN 209 ++ +L F GRLGG+EF G ++ IL L+ I N + + Sbjct: 329 REVAQRLKATIRESDFCGRLGGDEFVVCLDILQDHSGVRDKSYQILDKLLKPIRANDE-D 387 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G SI I + E+ + P ++ AD+A+YVAK + + C Sbjct: 388 LSVGVSIGIAL---YPEQSTQMP--GLLRIADEAMYVAKHQSGSMIYC 430 >gi|254503919|ref|ZP_05116070.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222439990|gb|EEE46669.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 409 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 125/262 (47%), Gaps = 16/262 (6%) Query: 11 IWLCHEKNLESFS--PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68 I + H+ N E P Y + A+ + I L Y+ + F + Sbjct: 137 IEVHHDDNDERTDGDPRVPETYIEAYVPAITASGEKVGTIEL-YVDASAFEEALEETFQE 195 Query: 69 LSLVIISITISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124 +S+ +++ T+ +LL I+ + + +L + R+ +L+R D L+G+ N ++ L + Sbjct: 196 VSIYLVAGTVLVLLFPIAAFVRRTQQLMQNDKRMLELTRYDQLTGVFNRNSTTQHLKALF 255 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEE 179 I+F D+DYFKQ+ND +GH GD ++ ++D L VGR GG+E Sbjct: 256 IDPDRAAGTGILFVDVDYFKQVNDKYGHACGDILLKHIADVLKSSIRLKDDVVGRYGGDE 315 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIY 238 F ++ + L+ ++++E ++ + G S ++S G + ++ Sbjct: 316 FVILCRNITKADFRGLS---QRVMEGAKTPCTHEGNSYTPSLSVGAYLSRDGDTEDLALH 372 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 RAD A+Y AK+ GRN+VV FS+ Sbjct: 373 RADLAVYAAKRGGRNQVVEFSE 394 >gi|182701591|ref|ZP_02612364.2| putative diguanylate cyclase [Clostridium botulinum NCTC 2916] gi|182670760|gb|EDT82734.1| putative diguanylate cyclase [Clostridium botulinum NCTC 2916] Length = 843 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 14/162 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFI----SSLGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +I L+ D L+GL N I ++ SY NEK +++F D+D+FK IND GH VGD Sbjct: 418 KILGLAYYDSLTGLSNRKKIIETINKTINSYENEKFAVLFIDLDHFKSINDTLGHDVGDY 477 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209 V+ +S + ++ +GRLGG+EF ++ +E+ A + L I+ + + Sbjct: 478 VLEKVSARFKMLLSPKHKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 537 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + G SI I+I + ST++ AD A+Y AKK+G Sbjct: 538 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNG 574 >gi|187926060|ref|YP_001892405.1| diguanylate cyclase [Ralstonia pickettii 12J] gi|241665547|ref|YP_002983906.1| diguanylate cyclase [Ralstonia pickettii 12D] gi|187727814|gb|ACD28978.1| diguanylate cyclase [Ralstonia pickettii 12J] gi|240867574|gb|ACS65234.1| diguanylate cyclase [Ralstonia pickettii 12D] Length = 448 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 10/173 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L + + S +R D L+G LN +L N L I F DID FK IND Sbjct: 276 QLRKALDMASASARHDLLTGALNRKGLEEALEREVARAARQNTALCIAFLDIDDFKAIND 335 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD ++ L+ + R GGEEF +S +E L++ + Sbjct: 336 THGHSFGDDALSHLAQVARESMRPQDTLARFGGEEFVILMPDTSLEEGVQTIVRLQRAL- 394 Query: 205 NSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +Q ++G + + IT SAG+AE EP I RAD+ +Y AK++G+N+VV Sbjct: 395 -TQRFFAAGDTRLFITFSAGVAEVGKNEPPMAAIQRADRGMYQAKRAGKNKVV 446 >gi|307300411|ref|ZP_07580191.1| diguanylate cyclase [Sinorhizobium meliloti BL225C] gi|307318276|ref|ZP_07597711.1| diguanylate cyclase [Sinorhizobium meliloti AK83] gi|306895958|gb|EFN26709.1| diguanylate cyclase [Sinorhizobium meliloti AK83] gi|306904577|gb|EFN35161.1| diguanylate cyclase [Sinorhizobium meliloti BL225C] Length = 316 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 9/162 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDK 153 + S++D L+ + N + L + + + DIDYFK IND +GH GD+ Sbjct: 138 RASQVDELTSVPNRRYTMERLNEFIRNCAENPHMWGCVAIIDIDYFKAINDRYGHHRGDE 197 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + Q+ GR+GGEEF ++ EA ++ + L I N++ +S+ Sbjct: 198 VLLDFARQMQEFVRRSDCFGRIGGEEFMLILPDTTVGEANLILDRLLDKIRNARP-LSNI 256 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P T S G+AE + + I RAD+ALY+AK+ GR+RV Sbjct: 257 PEFFYTCSVGLAEYREGDSVGDIYSRADEALYIAKREGRDRV 298 >gi|167033233|ref|YP_001668464.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166859721|gb|ABY98128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 698 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 24/186 (12%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIND 144 E ++ +I ++ D L+GL N + F L GS N KL+ D+D FK IND Sbjct: 264 EELAAHAQIHHMAHHDALTGLPNRTLFNERLRQALVRGSENAKLTAALCLDLDNFKNIND 323 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH GDK++ L +L + RLGG+EFA G ++AA N ++ Sbjct: 324 SLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGLEGRDAAC--NTAHRL-- 379 Query: 205 NSQINISSGP--------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IN S P S+ ++I IA + + + Y AD ALY AK++GRNR Sbjct: 380 ---INAISPPFQIEGHQFSVGVSIGIAIAPDDNDQAEQLLGY-ADMALYEAKRNGRNRYE 435 Query: 257 CFSDIE 262 CF D+E Sbjct: 436 CF-DVE 440 >gi|323488321|ref|ZP_08093569.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis MPA1U2] gi|323397979|gb|EGA90777.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis MPA1U2] Length = 758 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 19/176 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +L+ D LSGL N F+ L ++EK+++VF D+D FK +ND+FGH Sbjct: 319 RKMEELAYYDVLSGLPNRRLFLEKLEDSIRDAKQHSEKVAVVFIDLDRFKNVNDSFGHEF 378 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ S+++ + + R GG+EF ++ +D+ +I+ Q + Sbjct: 379 GDLLLQGFSEKIKENLRSDDVISRQGGDEFTIILNNIYDE------HDISPLIQRLQTAL 432 Query: 211 S-----SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +G +HI++S GIA E ++ AD A+Y AK G+N FSD Sbjct: 433 AKPMMINGQELHISMSIGIAVYPKDGETTGELLKHADSAMYSAKAKGKNNFQFFSD 488 >gi|153212739|ref|ZP_01948396.1| GGDEF family protein [Vibrio cholerae 1587] gi|124116389|gb|EAY35209.1| GGDEF family protein [Vibrio cholerae 1587] Length = 443 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G+LN AF L N KL+++FFD+D FK+IND GH VGD V+ Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214 ++ +L F GRLGG+EF Q+ + + N +++E Q + + Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386 Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S+ I +S G+A E+ + P ++ AD+A+Y AK N V C Sbjct: 387 SLEIGVSIGVALYPEQATQIP--ELLRIADEAMYTAKHQSGNTVYC 430 >gi|91201909|emb|CAJ74969.1| hypothetical protein kuste4207 [Candidatus Kuenenia stuttgartiensis] Length = 511 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 24/238 (10%) Query: 42 VIFIANIFLFYIGLTPFYGLEYILVE-NLSLVIISITISLLLGYISGSIL------KELF 94 V+ AN F FYI +E IL+E N L I++T + + + + +EL Sbjct: 276 VVHNANYFGFYIKKPK--SIEEILIEANTILSGINLTYDQMNKELVNAKIQMQKAARELE 333 Query: 95 ISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVF----FDIDYFKQINDNFG 147 I + L+ ID L+ + NH F+ + ++ VF D+D FK+ NDN+G Sbjct: 334 IKNKWLESLANIDGLTEVYNHRYLQIFLERELNRTKRKKGVFCLIMLDVDNFKKFNDNYG 393 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD ++ L D L T + R GGEEFA S + A I+A LR+ + Sbjct: 394 HQAGDFILKELCDLLKKGIRTYDILARYGGEEFAIVLPESDLEGALIVAERLRQRVA-EH 452 Query: 208 INISSGPSIHITISAGIAERCHKEPI-----STIIYRADQALYVAKKSGRNRVVCFSD 260 + + +TIS G+AE K I S +I RAD+AL +KK+G+NR+ D Sbjct: 453 VFADNKEQYKVTISIGVAET--KPSIDNLNRSGLIGRADKALLESKKNGKNRITACLD 508 >gi|262192381|ref|ZP_06050534.1| GGDEF family protein [Vibrio cholerae CT 5369-93] gi|262031734|gb|EEY50319.1| GGDEF family protein [Vibrio cholerae CT 5369-93] Length = 443 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G+LN AF L N KL+++FFD+D FK+IND GH VGD V+ Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214 ++ +L F GRLGG+EF Q+ + + N +++E Q + + Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386 Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S+ I +S G+A E+ + P ++ AD+A+Y AK N V C Sbjct: 387 SLEIGMSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430 >gi|188588974|ref|YP_001920748.1| ggdef/hd domain protein [Clostridium botulinum E3 str. Alaska E43] gi|188499255|gb|ACD52391.1| ggdef/hd domain protein [Clostridium botulinum E3 str. Alaska E43] Length = 569 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 9/171 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + ID L+ L NH F SL YN+ ++++F DIDYFKQ ND GH GD Sbjct: 190 LEDMINIDGLTELYNHRYFCDSLVENVKSGEKYNKPVAMIFIDIDYFKQYNDINGHQKGD 249 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211 V+ + + R GGEEF+ ++E++A +A +LRK IE + Sbjct: 250 YVLKKIGKIIKENSRKEDIPARYGGEEFSIILPETNEEKALNIAENLRKSIETTYFEGEE 309 Query: 212 SGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261 + P+ +T+S G++ +K +I AD ALY AK +NRV ++ I Sbjct: 310 NQPNGKVTVSIGVSVYPYKAKNDVELIKSADDALYRAKFFYKNRVEVYTSI 360 >gi|157376555|ref|YP_001475155.1| GGDEF domain-containing protein [Shewanella sediminis HAW-EB3] gi|157318929|gb|ABV38027.1| GGDEF domain-like protein [Shewanella sediminis HAW-EB3] Length = 325 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 26/172 (15%) Query: 107 DCLSGLLNHSAFISSL-----------GSYNEKLS--IVFFDIDYFKQINDNFGHPVGDK 153 D L+GLLN AF S L G +++LS + FDID FK IND FGH GD+ Sbjct: 145 DVLTGLLNRKAFESRLKLASETSYQNSGLDDQRLSYWLCIFDIDKFKLINDTFGHLYGDE 204 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ----EAAILANDLRKIIENSQIN 209 ++ L + VF + R GG+EF ++Q + N+L + Sbjct: 205 ILLDLVTVMRNVFSESDGMFRFGGDEFVLLIAPDTKQRVRAKCERFCNELYEF------- 257 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +I +T+S G+ E E S ++ +ADQALY K++GRNR+ F ++ Sbjct: 258 --HDQNIQVTLSMGMTEVLPGEQASGLLEKADQALYYVKENGRNRIEIFEEL 307 >gi|167031258|ref|YP_001666489.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida GB-1] gi|166857746|gb|ABY96153.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida GB-1] Length = 342 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 78/130 (60%), Gaps = 4/130 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK+IND++GH GD+V+ ++D V GR+GGEEFAA G + Sbjct: 213 LAFLLLDIDDFKRINDSYGHQEGDQVLQHIADSGKAVLRRGDLFGRIGGEEFAAVFPGCN 272 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYV 246 + A +A L++ I+ +++ S G + +T+S G+ ++ + ++ RAD A+Y Sbjct: 273 AEVAEQIAERLQRQIQ--RLSFSHGQQTYGVTVSQGLTGLTEEDVTLDSLYARADAAMYQ 330 Query: 247 AKKSGRNRVV 256 AK+ G+N++V Sbjct: 331 AKRQGKNQIV 340 >gi|152995260|ref|YP_001340095.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150836184|gb|ABR70160.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 345 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 11/155 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + S + + LS++ DIDYFK+IND +GH +GD + ++ Sbjct: 188 DPLTGLFNRRGLNLHFTKELDSADTTSSPLSLILIDIDYFKKINDMYGHDIGDVCLIEIA 247 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L + R GGEEF + + E +A L+ +I N + S ++ +T Sbjct: 248 NTLSQAIRKNDIIARFGGEEFIIILPNTPKNETVAIAEKLKVLISNQKF---SSFNLSLT 304 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 I+ G+ E + + +I RAD+ALY K GRN Sbjct: 305 ITQGLTEYNKNNDNALKMIKRADKALYRGKDKGRN 339 >gi|22298753|ref|NP_682000.1| GGDEF family protein [Thermosynechococcus elongatus BP-1] gi|22294934|dbj|BAC08762.1| GGDEF family protein [Thermosynechococcus elongatus BP-1] Length = 355 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 90/171 (52%), Gaps = 17/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q+S+ D L+ L N F S L + + L+IV DID+FK ND +GH GD Sbjct: 164 LQQISQQDSLTKLANRRTFESRLRLVWQEAAATHTPLAIVLLDIDHFKDYNDTYGHLAGD 223 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI---IENSQIN 209 + + ++ + V R GGEEF L + +AAI L +I I + +I Sbjct: 224 RALQRVAYAIKSQVRATDLVARYGGEEF-VLLLSQAHHDAAICI--LERIFNHIRSLEIP 280 Query: 210 ISSGP-SIHITISAG--IAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 +S P ++T+SAG IA ++ PIS +I AD ALY AK+SGR+R V Sbjct: 281 HASSPVKPYLTLSAGICIATATPRDCPISELIATADAALYEAKRSGRDRYV 331 >gi|315126379|ref|YP_004068382.1| response regulator [Pseudoalteromonas sp. SM9913] gi|315014893|gb|ADT68231.1| response regulator [Pseudoalteromonas sp. SM9913] Length = 432 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 14/172 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L+ D L+ LLN F+ + ++ L++ DID+FK+IND FGH G Sbjct: 258 QLKDLTIKDPLTNLLNRRGFMETAKLALDECIKDSQHLTLTMIDIDHFKRINDQFGHEGG 317 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ + + RLGGEEF + L+ ++++ + +S Sbjct: 318 DSVLQSIAATFKSFCDSDDIIARLGGEEFCIVSPTKCVSTVVKTLAKLQDHLKDNPVQLS 377 Query: 212 SGPSIHITISAGI----AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 SG + TIS+G+ +E C + ++ AD ALY AK +GRN+ V F+ Sbjct: 378 SGGQVSYTISSGVSSLTSESCS---LQGLLRNADTALYNAKTTGRNQTVVFN 426 >gi|296135644|ref|YP_003642886.1| diguanylate cyclase [Thiomonas intermedia K12] gi|295795766|gb|ADG30556.1| diguanylate cyclase [Thiomonas intermedia K12] Length = 546 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 8/166 (4%) Query: 98 NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++SQ + D L+G LN + S + + L++ D+D+FK +ND GH Sbjct: 354 EQVSQQLQEDPLTGALNRRGLDAEFTRMQSRVVRQGQPLTLALLDLDHFKAVNDTHGHDT 413 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQIN 209 GD V+ L Q + V R+GGEEF + Q++ ++ L + + + Sbjct: 414 GDAVLKALVAQAKRLIRPSDRVARMGGEEFMLLLPDTPVQQSLVVVQRLLVAFSDQTLVQ 473 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S+G I ++ SAG+AE C E I R D AL AK++GR RV Sbjct: 474 DSTGRRIPLSFSAGVAELCPDEDFPAIYQRVDAALLQAKQAGRKRV 519 >gi|213968756|ref|ZP_03396897.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] gi|301386580|ref|ZP_07234998.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13] gi|302063330|ref|ZP_07254871.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40] gi|302135358|ref|ZP_07261348.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926359|gb|EEB59913.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] Length = 355 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 28/244 (11%) Query: 24 PHTFMIYF-SIFFSIFIATVIFIANIFLFYIGLTPFYGLE-----YILVENLSLVIISIT 77 P MI S ++ +F++ L +I L+P G++ Y+ + + + SI Sbjct: 99 PIALMIILCSTLLVVYTRDYLFVS--VLSWIILSPAQGIDTDSAAYVFM--MLFFVSSIA 154 Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------I 131 + ++L + L+++ +R +LS D L+ +LN A + +L +E+L+ Sbjct: 155 LGVVLNHTYTRTLRKVLTLESRFRELSLTDDLTDILNRRALMLAL---DEQLANNSGGYF 211 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID FK IND FGH GD+V+ ++ L G+ F GR+GGEEF S E Sbjct: 212 LMLDIDNFKTINDQFGHDAGDEVLRLMASCLQQTPGSLAF-GRMGGEEFGVILPVSGEPV 270 Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 A L I S P++ +T SAG+A+ S ++ AD +Y AK+ Sbjct: 271 ACDYVLRLLDTIRRS-------PAVSSLTCSAGLADIDANSTSSQVLKTADINMYQAKRE 323 Query: 251 GRNR 254 G++R Sbjct: 324 GKDR 327 >gi|153933976|ref|YP_001382759.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC 19397] gi|153934947|ref|YP_001386310.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall] gi|152930020|gb|ABS35520.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC 19397] gi|152930861|gb|ABS36360.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall] Length = 892 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 14/170 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +I L+ D L+GL N I ++ NEK +++F D+D+FK IND GH VGD Sbjct: 467 KILGLAYYDSLTGLSNRKKIIETINKTINNYENEKFAVLFIDLDHFKSINDTLGHDVGDY 526 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209 V+ +S + ++ +GRLGG+EF ++ +E+ A + L I+ + + Sbjct: 527 VLEKVSARFKMLLSPKHKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 586 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + G SI I+I + ST++ AD A+Y AKK+G + +S Sbjct: 587 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNGGYKYEVYS 631 >gi|126661523|ref|ZP_01732571.1| regulatory components of sensory transduction system [Cyanothece sp. CCY0110] gi|126617189|gb|EAZ88010.1| regulatory components of sensory transduction system [Cyanothece sp. CCY0110] Length = 458 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 27/174 (15%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGD 152 +++ + ID L+G+ N F +L + EK LSI+ FD+DYFK ND++GH GD Sbjct: 287 LNRRATIDGLTGIYNRQTFDQNLIKEWGRARREKQTLSIILFDVDYFKLYNDHYGHQAGD 346 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI- 210 + ++ + + + FV R GGEEF L +++Q+ AI+ I+EN Q I Sbjct: 347 DCLKQIAQTVKKILNRSVDFVARYGGEEF-VVILPNTDQQGAII------IVENIQHAIY 399 Query: 211 -------SSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNR 254 S S ++IS GIA R P + +I AD+ALY AK+ GRNR Sbjct: 400 TLAIPHKESKVSELVSISVGIASIIPRSASSP-ADLINLADKALYRAKQQGRNR 452 >gi|107028920|ref|YP_626015.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] gi|116689922|ref|YP_835545.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] gi|105898084|gb|ABF81042.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] gi|116648011|gb|ABK08652.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] Length = 492 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 92/197 (46%), Gaps = 14/197 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I +SLLLG S L+ + + + L+R D L+GL N +F L + + Sbjct: 300 IALSLLLG----SQLRRRMRAESELVLLARTDGLTGLSNRRSFGEVLDNEWRRARRARSV 355 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 S++F D+D FK ND +GH GD +A ++ + P R GGEEF + Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 415 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALY 245 S+ AA +A +R I+ + + +T S G+A + +I AD+ALY Sbjct: 416 SQTGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPDQEGQPDAVIKAADEALY 475 Query: 246 VAKKSGRNRVVCFSDIE 262 AK +GRN+V E Sbjct: 476 YAKATGRNKVAALQPAE 492 >gi|254784461|ref|YP_003071889.1| diguanylate cyclase with PAS/PAC sensor [Teredinibacter turnerae T7901] gi|237686179|gb|ACR13443.1| diguanylate cyclase with PAS/PAC sensor [Teredinibacter turnerae T7901] Length = 474 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 10/179 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFK 140 S LK ++ +LS D ++G+ N F+ Y+ ++ D+D FK Sbjct: 295 SRLKAQEEEEQKLFKLSSTDSMTGVFNRGYFLELANRAHHQGERYDHNFCVMMLDVDNFK 354 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND FGH GD+ + + + L +GR+GGEEFA SS + +LA+ + Sbjct: 355 SINDRFGHAEGDRALTQIGNILKNSVRKTDIIGRVGGEEFAIVLPESSIDQGVVLADKIL 414 Query: 201 KIIENSQINISSGPSIH--ITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IE+++++ + T+S G +A+ E + ++YRADQ LY AK +G+ +VV Sbjct: 415 YNIEDARMHSDDPDGLGGCPTLSIGLVAKGDENETFNELLYRADQLLYKAKHTGKAKVV 473 >gi|167573038|ref|ZP_02365912.1| putative transmembrane transcriptional sensor regulator [Burkholderia oklahomensis C6786] Length = 490 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 16/170 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 317 LARLAGTDSLTGLHNRRALDETLEREWRRAVCGERPLAILFVDIDHFKRYNDTYGHQVGD 376 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 377 DVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRMGVRMLGIE 434 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G+A + ++ ++ ADQALY AK GRNRV Sbjct: 435 HEGSEVGFVTVSVGVAVWQPDGTPAPHVAAVVEAADQALYQAKAGGRNRV 484 >gi|325913953|ref|ZP_08176309.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325539722|gb|EGD11362.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 507 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 89/180 (49%), Gaps = 20/180 (11%) Query: 96 SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145 S NR+ L+ D L+G+ N ++L E LSI F D+D FK++ND Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQSWPLSIAFIDLDDFKRVNDA 376 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203 GH VGD+V+ + L + T V R GGEEF L ++ +AA++ + L + Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTPADAALMVIERILAETA 435 Query: 204 ENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + GP +HIT SAG+A ER E I ++ AD LY +K GRNRV + Sbjct: 436 RTPMAQLQGGP-LHITFSAGLATHGGIER-QFESIEHLLQAADSTLYRSKHRGRNRVTAY 493 >gi|255522684|ref|ZP_05389921.1| GGDEF domain protein [Listeria monocytogenes FSL J1-175] Length = 264 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131 +LL+ Y I K + N +++ + D L+ L N F G + LS+ Sbjct: 73 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFAKSQKRKKSLSL 131 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190 DID+FK+IND GH G+ V+A S L F R+GGEEFA + Sbjct: 132 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 191 Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247 +AA++A+ R+ +E ++ N +SG +T+S G+A + ++ ADQALY A Sbjct: 192 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 248 Query: 248 KKSGRNRVVC 257 K++GRN++ Sbjct: 249 KQNGRNQIAV 258 >gi|77918829|ref|YP_356644.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380] gi|77544912|gb|ABA88474.1| diguanylate cyclase [Pelobacter carbinolicus DSM 2380] Length = 517 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 11/184 (5%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138 S + +L + + +L+ D L+GL N F++ + Y LS+VFFD+D+ Sbjct: 333 SQQCINKLLDANKSLRKLAYRDELTGLYNQRFFLTEMDKELARAKRYGYSLSLVFFDVDF 392 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK IND GH GD V+ +S ++ + V R GG+EFA + + + AI Sbjct: 393 FKNINDTHGHLAGDAVLRHVSAKVTSCVRSCDTVVRYGGDEFAIIMPETDQGDLAIFTER 452 Query: 199 LRKIIENSQINISSGPSIHITIS-AGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 LR +E + + +G +I +TIS G + E ++ ++ ADQA+Y +KK GRN V Sbjct: 453 LRFEVEKMLVPM-NGKTIAVTISIGGTSFDGRDESVTRYVLLNVADQAIYQSKKLGRNTV 511 Query: 256 VCFS 259 S Sbjct: 512 TIQS 515 >gi|326385565|ref|ZP_08207199.1| hypothetical protein Y88_1763 [Novosphingobium nitrogenifigens DSM 19370] gi|326209899|gb|EGD60682.1| hypothetical protein Y88_1763 [Novosphingobium nitrogenifigens DSM 19370] Length = 602 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 13/161 (8%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +L + LS+V D+D+FK+ ND FGH GD V+ ++ Sbjct: 434 DPLTGLFNRRYMEETLALEIVRVLRSGDPLSLVMCDVDHFKRFNDEFGHDAGDAVLQAVA 493 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217 ++ F + R GGEEF A GS+ + A + +R+ I S++ + G Sbjct: 494 VEMRSRFRDGDVICRFGGEEFTIIAPGSTAADMAARVDVVRQAI--SELTVHQGGRTLGA 551 Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IT+S G+ + + ST+I AD LY AK+ GRNRVV Sbjct: 552 ITMSFGVTAWDNSMERDGSTLIKTADAGLYRAKREGRNRVV 592 >gi|310659718|ref|YP_003937439.1| hypothetical protein CLOST_2418 [Clostridium sticklandii DSM 519] gi|308826496|emb|CBH22534.1| protein of unknown function [Clostridium sticklandii] Length = 250 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 11/182 (6%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVF 133 LL + KEL + L+ D L+GL N I+ Y S++ Sbjct: 67 LLEIMVNEKTKELEKLLQQTMVLAITDKLTGLYNRLEIDKRLDEAIAGFKRYAAAFSVLI 126 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D FK++ND +GH GD + ++ L +GR GGEEF + E+ Sbjct: 127 VDVDNFKRVNDVYGHQKGDWCLQKTAEILKERMRKTDVLGRWGGEEFIVICPSTHLAESV 186 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +L +RK IE +I + T+S GI+ + + II RAD+ LY+AK GRN Sbjct: 187 LLGESIRKAIEEESFDIEG----NYTVSIGISSVQKDDEANCIIKRADENLYLAKSKGRN 242 Query: 254 RV 255 RV Sbjct: 243 RV 244 >gi|262403018|ref|ZP_06079578.1| sensory box/GGDEF family protein [Vibrio sp. RC586] gi|262350517|gb|EEY99650.1| sensory box/GGDEF family protein [Vibrio sp. RC586] Length = 308 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+ L N S S N+ LS + DID FK IND+FGH GD+V Sbjct: 142 ELANTDSLTQLSNRRKLWSDFRSAFSRAKHSNQPLSCISIDIDNFKLINDHFGHDKGDEV 201 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + FL+ + GR+GGEEF + +A LA +R Sbjct: 202 LCFLAKLFYRLASEHALCGRVGGEEFIIVLENTPLADAFNLAEAIRHHFSQHAF---FEQ 258 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 H+ + AG++ R I+ I R+DQALY AK+SGRNR ++ Sbjct: 259 QEHVYLCAGVSTMRISDHDITDIYRRSDQALYQAKRSGRNRCCAYN 304 >gi|229592005|ref|YP_002874124.1| putative regulatory protein [Pseudomonas fluorescens SBW25] gi|229363871|emb|CAY51345.1| putative regulatory protein [Pseudomonas fluorescens SBW25] Length = 801 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 13/184 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 +L GY+S + +L + LS D L+G+ N F + L + LS+ Sbjct: 618 TLWHGYVSD--ISDLKRVEEELRALSITDSLTGIHNRRYFQDRLKAEMVRLNRTSGALSV 675 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK+IND GH VGD V+ L ++ RLGGEEF + + Sbjct: 676 IMLDIDHFKRINDQHGHAVGDGVLQELCKRISQRLRRTDVFCRLGGEEFMVLCPHTDGDQ 735 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A LA +L + ++ + P +T S G+A E I ++ RAD A+YVAK+ G Sbjct: 736 AYSLATELWASLRSAPME----PVGIVTASFGVASWRVDEGIDGLLLRADSAVYVAKQGG 791 Query: 252 RNRV 255 R+RV Sbjct: 792 RDRV 795 >gi|183179368|ref|ZP_02957579.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|183012779|gb|EDT88079.1| GGDEF family protein [Vibrio cholerae MZO-3] Length = 443 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 15/166 (9%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G+LN AF L N KL+++FFD+D FK+IND GH VGD V+ Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214 ++ +L F GRLGG+EF Q+ + + N +++E Q + + Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386 Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S+ I +S G+A E+ + P ++ AD+A+Y AK N V C Sbjct: 387 SLDIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430 >gi|189425499|ref|YP_001952676.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] gi|189421758|gb|ACD96156.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] Length = 316 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 20/177 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S I QLS D L+G N I Y LS++ D+D+FK+IND +GH Sbjct: 135 SLEEIKQLSIRDALTGAFNRGYLDQHLPHEIRRADRYLRDLSLIMMDLDHFKKINDTWGH 194 Query: 149 PVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GD V+ + ++ GT +V R GGEEF + ++A LR +IE Sbjct: 195 QAGDAVLQHC---IRIIAGTIRHEVDWVARYGGEEFVLVLPETDRTGCRVVAERLRSLIE 251 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIS-----TIIYRADQALYVAKKSGRNRVV 256 + + S ++ IT S G R + + ++ ADQ LY AK++GRNRVV Sbjct: 252 AAPCSFRSA-TLGITASFGTVTRTPADSRAINSPDQLLNLADQCLYAAKQAGRNRVV 307 >gi|120402963|ref|YP_952792.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase [Mycobacterium vanbaalenii PYR-1] gi|119955781|gb|ABM12786.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Mycobacterium vanbaalenii PYR-1] Length = 617 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 20/193 (10%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------- 129 I+ L + + E + Y L+ D L+GL N A ++ L +E+L Sbjct: 163 IASLFAQVQARVQAEEQLRY-----LAEHDDLTGLYNRRALLAHL---DERLAEGRPGPV 214 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S +FFD+D K IND GH GD I L+++L P + RLGG+EF + Sbjct: 215 SALFFDLDRLKAINDYLGHTAGDWFIRVLAERLRRGADCPNIIARLGGDEFVLVPTVPMD 274 Query: 190 QEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVA 247 AA LA+ L+ + +++I G + T+S G+A+ ++ S ++ RADQA+ A Sbjct: 275 GAAAEALAHRLQSTL-RERVSI-DGEMLTRTVSIGVAQGIPGRDTTSDLLRRADQAVLTA 332 Query: 248 KKSGRNRVVCFSD 260 K SG N VV F+D Sbjct: 333 KGSGGNEVVVFTD 345 >gi|260770460|ref|ZP_05879393.1| diguanylate cyclase [Vibrio furnissii CIP 102972] gi|260615798|gb|EEX40984.1| diguanylate cyclase [Vibrio furnissii CIP 102972] Length = 399 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 113/249 (45%), Gaps = 15/249 (6%) Query: 19 LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL----VII 74 L S P + +++ F I ++F ++ L L + V+ L L ++ Sbjct: 152 LVSAYPTSQIVFMVFFLGIAQMWIVFTETATRSFVSLALLSTLTAVFVDVLGLSDRAMVY 211 Query: 75 SITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126 TI LL G + + + ++ +LS D L+ + FI ++ YN Sbjct: 212 QFTIYLLAANTYFGLWVPHILVDNQKLRRLSEQDILTDVQTRQFFIRNVHDEVIRARRYN 271 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + +S+V FD+D FK INDN GH VGDKV+ +++ + +GR GG+EF G Sbjct: 272 QPVSMVLFDVDNFKAINDNHGHIVGDKVLIAIANLVKQEIRPSDKIGRFGGDEFMLLLPG 331 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 A +A LR+ I + I I +T S G+ E + + +AD+ L Sbjct: 332 DDLSGAIRVAERLRQAI--GHLYIDDFGDI-VTCSFGVTEMKSNDNFVSAFEQADKLLLA 388 Query: 247 AKKSGRNRV 255 AKK GR+RV Sbjct: 389 AKKEGRHRV 397 >gi|225872968|ref|YP_002754427.1| GAF domain/GGDEF domain protein [Acidobacterium capsulatum ATCC 51196] gi|225791789|gb|ACO31879.1| GAF domain/GGDEF domain protein [Acidobacterium capsulatum ATCC 51196] Length = 369 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 20/177 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + ++ D L+G+ N AF L LS++ D+D+FK++ND GH GD Sbjct: 194 LQEMVTTDALTGVKNRRAFDEGLQQAWKMSARTKSPLSLLMVDVDHFKRVNDTLGHEAGD 253 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L + + V R GGEEF G+ + A A LR I N ++ Sbjct: 254 DVLRLVAQTLQFMTRSTDMVARYGGEEFVVVLPGTEAEPAVAFAEQLRLNIAN--LSWRG 311 Query: 213 GP-SIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 P ++ I + +G C ++ AD ALY AK SGRNRV+ F D E ++ Sbjct: 312 HPLTVSIGVDSGSGSGKTECE------LVAHADAALYRAKNSGRNRVLRF-DPEKDS 361 >gi|114777422|ref|ZP_01452419.1| diguanylate cyclase (GGDEF domain) [Mariprofundus ferrooxydans PV-1] gi|114552204|gb|EAU54706.1| diguanylate cyclase (GGDEF domain) [Mariprofundus ferrooxydans PV-1] Length = 411 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 6/169 (3%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNF 146 L E+ + R +R D L+GL N + F++SLG + +V D+D FK IND + Sbjct: 240 LTEMSDNLARAKLDARNDPLTGLANRRHLAEFLNSLGKNS--FCVVICDVDNFKNINDTY 297 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+++ L+ L+ + R+GGEEF + Q +A LR ++ Sbjct: 298 GHDAGDEILRQLAAILLGSTRSTDLAARIGGEEFCIVFPDTDLQSCVGMAESLRHSVDLQ 357 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ++G I +TIS G+A E + AD+ALY +K++GRN+V Sbjct: 358 PLKTAAG-DIAVTISIGLAPHKEDENHAATFKAADKALYQSKENGRNQV 405 >gi|119773207|ref|YP_925947.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119765707|gb|ABL98277.1| response regulator receiver modulated diguanylate cyclase [Shewanella amazonensis SB2B] Length = 305 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 19/207 (9%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115 YGLE V+ + I +++ + I +L +R+ ++ D L+GL N Sbjct: 95 YGLELGAVD---YITKPIRPAIVRARVCAHI--QLKQQRDRLQSMAMHDQLTGLYNRHFL 149 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S ++ + + +++V D+D+FK++NDN+GH VGDKV+ ++ L Sbjct: 150 IECASQRLARVARHRNPMTLVLMDVDHFKRVNDNYGHHVGDKVLIEVARLLSTNMRREDV 209 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HK 230 V RLGGEEF + S AA LR ++E + + I +T S G+ E + Sbjct: 210 VARLGGEEF-VMLMDCSLDNAAAKVEHLRHLLEALEPD-----GIKVTGSFGLVEASPYN 263 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257 S ++ AD +Y AK GRN VVC Sbjct: 264 ADFSHLLVLADDGVYRAKTQGRNCVVC 290 >gi|134291596|ref|YP_001115365.1| diguanylate cyclase [Burkholderia vietnamiensis G4] gi|134134785|gb|ABO59110.1| diguanylate cyclase [Burkholderia vietnamiensis G4] Length = 513 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 10/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+R D L+GL N AF +L LS++F DID FK ND++GH GD Sbjct: 334 LQRLARRDALTGLENRGAFDETLRQEWANTLRTGRHLSLLFIDIDQFKSYNDHYGHQSGD 393 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + + ++ + P V R GGEEF + + AA +A ++R+ I + + Sbjct: 394 RALKAVAHCISACVSRPSDHVARYGGEEFVVILPETDVEGAAAVAEEIRQAIHDMHVAHV 453 Query: 212 SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255 ++T S G++ H +I AD A+Y AK GRNRV Sbjct: 454 KSRFNYVTASIGVSSSAHPAVHDGDALIRVADLAVYEAKSQGRNRV 499 >gi|332994223|gb|AEF04278.1| GGDEF domain-containing protein [Alteromonas sp. SN2] Length = 517 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 77/171 (45%), Gaps = 20/171 (11%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS+ D L+ L N A+ + S + L++ DID+FK IND FGH GDK + Sbjct: 353 LSQTDPLTRLPNRQAYNEKLSKAVQSWQDNGDDLAVAVIDIDHFKSINDRFGHAAGDKTL 412 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP- 214 + L F+ R GGEEF G ++Q+ L +R ++S P Sbjct: 413 QVVGKNLKQQLTENTFMARWGGEEFVLLLPGMNKQKVISLLETMR-------TKLASLPF 465 Query: 215 -----SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + IT S G + + + RAD LY AK SGRNRV+ D Sbjct: 466 KFKQEKVTITASFGASFFNKGDTPDAVFERADNLLYQAKNSGRNRVITDRD 516 >gi|330721091|gb|EGG99228.1| GGDEF/EAL-domain containing protein [gamma proteobacterium IMCC2047] Length = 724 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 92/178 (51%), Gaps = 26/178 (14%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N +AF+ L E+L+++F D+D FK +ND GH VGD V+ ++ Sbjct: 287 DSLTNLPNRAAFMERLQHLLYQAERSGERLAVIFIDVDNFKLVNDQHGHAVGDYVLTVIA 346 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--ILANDLRKII-----ENSQINISS 212 +L+ +GRLGG+EF A S+ A + N LR+I EN++ +S Sbjct: 347 KRLIRCVRKNDIIGRLGGDEFIVALSDVSDAYAPEQVARNILREITHEISKENNRFTMSC 406 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS-----DIENNT 265 SI I+I A + I ++I AD A+Y AK+SGRN F DIEN++ Sbjct: 407 --SIGISIYPDDA-----QVIDSLINHADVAMYRAKESGRNNYQFFKASMKEDIENSS 457 >gi|330505313|ref|YP_004382182.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328919599|gb|AEB60430.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 429 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 29/220 (13%) Query: 55 LTPFYGLEYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 L +GL ++L + L + + +SL++ + ++ E + Q++ D L+GL Sbjct: 199 LVGLFGLLWMLPQVFILANALQVMVSLVMLMLVAAVAHEAY-------QMAFRDELTGLP 251 Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 A L + I D+D+FK+ ND GH VGD+V+ ++ QL V G Sbjct: 252 GRRALNERLQRLGREYVIAMVDVDHFKKFNDTHGHDVGDQVLRLVASQLRKVGGGGKAY- 310 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SSGPS--------------- 215 R GGEEF G S ++ +R IE ++ + S PS Sbjct: 311 RYGGEEFTLLFPGKSVEQCMPYMEAVRLAIEQYRMQLRDKQSRPSDDREGKQRRAGKAAS 370 Query: 216 -IHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253 + +T+S G+AER + +I AD+ALY AK +GRN Sbjct: 371 EVSVTVSMGVAERQSEQRNPQEVIKEADKALYSAKAAGRN 410 >gi|262171751|ref|ZP_06039429.1| GGDEF family protein [Vibrio mimicus MB-451] gi|261892827|gb|EEY38813.1| GGDEF family protein [Vibrio mimicus MB-451] Length = 371 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 17/181 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIV--FFDIDYFKQIN 143 K+L+ + ++ LS D L+GL N + L S +K V D+D FK++N Sbjct: 193 KQLYQANRQLEALSLTDSLTGLPNRRKAMHQLALHWNLSREQKKPFVCVMIDVDGFKEVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D++GH +GDKV+ ++ L F V RLGG+EF A + +A + + Sbjct: 253 DSYGHDIGDKVLTIIAHALKDHFRNDDLVCRLGGDEFLAICPNTDAVSGVHIAEHVCDEV 312 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 E +I + G ++S G+AE + H E ++ ADQA+Y+AK +G+NRV F Sbjct: 313 ELLEIPV-EGIHWQGSVSMGVAEFDPNMKDHHE----LLRAADQAVYLAKNNGKNRVCAF 367 Query: 259 S 259 + Sbjct: 368 N 368 >gi|262171600|ref|ZP_06039278.1| GGDEF family protein [Vibrio mimicus MB-451] gi|261892676|gb|EEY38662.1| GGDEF family protein [Vibrio mimicus MB-451] Length = 443 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 85/168 (50%), Gaps = 19/168 (11%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GLLN AF L N KL+++FFD+D FK+IND GH VGD V+ Sbjct: 269 LSERDSLTGLLNRRAFKQQLSQALVKAKRSNLKLALLFFDLDKFKEINDTKGHEVGDIVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAA------ALGSSEQEAAILANDLRKIIENSQIN 209 ++ +L F GRLGG+EF G ++ IL L+ I N + + Sbjct: 329 REVAQRLKATIRESDFCGRLGGDEFVVCLDILQDHSGVRDKSYQILDKLLKPIRANDE-D 387 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G SI I + E+ + P ++ AD+A+YVAK + + C Sbjct: 388 LSVGVSIGIAL---YPEQSTQMP--GLLRIADEAMYVAKHQSGSMIYC 430 >gi|227904327|ref|ZP_04022132.1| ABC superfamily ATP binding cassette transporter, binding protein [Lactobacillus acidophilus ATCC 4796] gi|227867975|gb|EEJ75396.1| ABC superfamily ATP binding cassette transporter, binding protein [Lactobacillus acidophilus ATCC 4796] Length = 349 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GLLN+ AF + ++ S I DID+FKQ+ND +GH G+ V++ S + Sbjct: 189 DDLTGLLNYRAFDEEMQGLSKDESNMPIFIAVLDIDHFKQVNDTYGHLNGNTVLSTFSKK 248 Query: 162 LVVV----FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L + F V R GGEEF + + N + K + G I Sbjct: 249 LKLDIHHNFDPHCAVYRFGGEEFTILIKTKDNTKIIKILNSINKYYSKHPVITDEGQKIF 308 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + S G+ E + E + + RAD+ +Y AKK+GR +++ Sbjct: 309 FSFSGGLTEHHNNEKFTKTLERADELVYQAKKTGRAKIL 347 >gi|209521190|ref|ZP_03269914.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. H160] gi|209498362|gb|EDZ98493.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. H160] Length = 667 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 11/182 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYF 139 SG+ + E ++ +R+ + + D L+GL N +A + + E + ++F D+D F Sbjct: 220 SGTDITEQRLAQDRLIEQATTDPLTGLANRNAIQERIQIAIEQAAPGETVGVLFLDLDNF 279 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K +ND++GH GD++I +SD + + RLGG+EF A S A L N Sbjct: 280 KTVNDHYGHVFGDRLICDVSDAIRNCLNPGDSLARLGGDEFIVLATKGS---ADALENTA 336 Query: 200 RKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++I++ ++ + G ++ S GIA H + + ++I AD A+YVAK G+ Sbjct: 337 QRILDRMRMPFAVGLVEVYTGCSIGIARWPEHGDSLESLIRSADTAMYVAKDEGKRTHRV 396 Query: 258 FS 259 FS Sbjct: 397 FS 398 >gi|330895404|gb|EGH27742.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 298 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 23/234 (9%) Query: 31 FSIFFSIFIATVIFIANIFL--FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG- 87 S+FF FI + A I+L + I LT + V + L + + S LLG Sbjct: 45 MSVFFVKFIDYIAAAALIWLIMWQIDLTA------VGVNHAPLFYVFLISSTLLGGCLNA 98 Query: 88 ---SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVF--FDIDYF 139 S++ + + +R +LS D L+ N A ++SL S EK S+ F D+D+F Sbjct: 99 TFLSLVMQTMAARDRYQELSETDTLTHAPNRRALVASLNTALSCAEKSSLWFAMIDLDHF 158 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K IND GH VGD V+ + L G F GRLGGEEF ++ +A + L Sbjct: 159 KSINDTHGHDVGDNVLVGFATLLKGTKGLIAF-GRLGGEEFGVILSAANAIDA---VHAL 214 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +++ +Q + + + SAG+A E ++ ++ AD+ LY AK++GR Sbjct: 215 EELLRRAQKD--EAAQVPYSFSAGVASLSRMETVNDLLKEADENLYHAKRNGRK 266 >gi|254475503|ref|ZP_05088889.1| putative response regulator PleD [Ruegeria sp. R11] gi|214029746|gb|EEB70581.1| putative response regulator PleD [Ruegeria sp. R11] Length = 480 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 21/170 (12%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GL N S + +++ D+D+FKQIND +GHPVGD V+ + Sbjct: 304 DPMTGLFNRRYAKPFLDQVAGSAAKSGDPFAVMLADLDHFKQINDIYGHPVGDAVLIEAA 363 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHI 218 +L V R+GGEEF G E A +A+DL I + +I+ IH+ Sbjct: 364 KRLQSALRPVDLVARVGGEEFMIVLPGLGEAMTAAVASDLCNRINSKPFHIAGVDRPIHV 423 Query: 219 TISAGIA-------------ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 TIS G + + ++ +I AD+ALY AK +GRNRV Sbjct: 424 TISIGAVIGGGTQHSEILRNPQAREACVNDLITNADRALYSAKHAGRNRV 473 >gi|152984602|ref|YP_001347191.1| hypothetical protein PSPA7_1808 [Pseudomonas aeruginosa PA7] gi|150959760|gb|ABR81785.1| membrane protein, putative [Pseudomonas aeruginosa PA7] Length = 726 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 99/186 (53%), Gaps = 22/186 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 ++L +L ++ + QL+R D L+GL N +AF + + L+++F D+D+FK Sbjct: 272 ALLNQLDHAHASLRQLARYDALTGLQNRTAFNEVFAQHLQNCQLRGKGLAVMFLDLDHFK 331 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-L 199 +IND+ GH GD+++ +S+++ V V R G+EF A + + EA IL+ L Sbjct: 332 RINDSLGHDSGDELLKIVSERIRSVLRDTDVVARFAGDEFCVLADLAQDHEAHILSQRLL 391 Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253 +K+ E ++ G ++ +T S G++ E+C + ++ A AL+ +K GRN Sbjct: 392 QKMKEPIALD---GRTLVMTASIGVSLYPNDGEQCEE-----LLKNAGLALHQSKSCGRN 443 Query: 254 RVVCFS 259 FS Sbjct: 444 NAQFFS 449 >gi|90577454|ref|ZP_01233265.1| hypothetical GGDEF family protein [Vibrio angustum S14] gi|90440540|gb|EAS65720.1| hypothetical GGDEF family protein [Vibrio angustum S14] Length = 413 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 21/176 (11%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +L+ ID L+ + A + L ++ D+D+FK+ ND +GH GD V+ ++ Sbjct: 237 ELAFIDQLTEIPGRRALDNELKHLGRTYTLAMIDVDHFKKFNDKYGHDTGDDVLKLVATL 296 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210 + + G V R GGEEF G S E +LR+ I ++ I Sbjct: 297 MKDIDGGGN-VYRYGGEEFTILFKGKSIDECLPFLEELREKIAKYKMIIRDHDKRPTSNR 355 Query: 211 ---------SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + S+ +T+S G+AE ++ ++ +AD ALY AK++GRNRV C Sbjct: 356 AGSKARGQDKTSKSVKVTVSIGVAENYLEQEPEDVLKQADNALYQAKEAGRNRVQC 411 >gi|71905700|ref|YP_283287.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB] gi|71845321|gb|AAZ44817.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB] Length = 783 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 10/160 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ D L+GL N + F + L + ++++FDID FK IND FGH VGD V Sbjct: 362 MAERDPLTGLANRARFAAELDRLVSRFQRDATQSGAVLYFDIDEFKTINDTFGHRVGDNV 421 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +D + + T + RLGG+EFA A G+ +A + K + G Sbjct: 422 LVRTADVVSKLVRTGELLARLGGDEFAIVAPGADLDGVQAMAERVVKALTGLSFEF-DGK 480 Query: 215 SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253 +TIS GIA H ++ AD A+Y AK+SG+N Sbjct: 481 RFGLTISLGIALLPEHAASAEELVAHADAAMYQAKRSGKN 520 >gi|296102342|ref|YP_003612488.1| putative diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056801|gb|ADF61539.1| putative diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 330 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 17/197 (8%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 +L +I+I + L L ++ SI L I + +++ +D L + N + KL Sbjct: 137 TLPLIAIYL-LALSILTDSIALRLRIKSRELERIAMMDPLLDIANRRLLEKRIDHELNKL 195 Query: 130 -------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 +++F DID FK +ND FGH VGD ++A +S L + RLGG+EF Sbjct: 196 RQTCRESALMFIDIDNFKDVNDRFGHKVGDALLAAVSQILHLSTRPNDTPARLGGDEFVV 255 Query: 183 AALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCH-KEPISTIIY-- 238 ++ +EA ++A R+I++ + + + ++H T+S GIA C +E IS + Sbjct: 256 LLPDTTLEEAQVVA---RRIMDAAAMKKEVAQETVHCTLSIGIA--CATREMISVTDWLQ 310 Query: 239 RADQALYVAKKSGRNRV 255 AD ALY AK+ G+NR+ Sbjct: 311 AADNALYRAKRDGKNRI 327 >gi|254786916|ref|YP_003074345.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237684302|gb|ACR11566.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 428 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 13/208 (6%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 G + LV+ ++ VI+S I + ++ + EL + QLS+ D L+GL N F Sbjct: 96 GGDDYLVKPVNQVILSAKIRAMERILN--MRNELNRLNEELVQLSQRDSLTGLFNRRTFE 153 Query: 120 SS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-F 171 + ++++ DIDYFK ND +GH GD+ I +++ L P Sbjct: 154 EKSTEVWRHATRSQQPVTVILMDIDYFKLYNDEYGHQAGDRCIRMVANALHRCLNRPNDI 213 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHK 230 V R GGEEF A + + A L +R+ +E I + S S +T+S G Sbjct: 214 VARYGGEEFIALLPNTPIEGAQHLTELIRETVEEMHIKHRGSKMSDRVTVSLGSTTTNFT 273 Query: 231 EPI--STIIYRADQALYVAKKSGRNRVV 256 I + +I +AD+ALY AK GRNR Sbjct: 274 TAIDLNRLISQADRALYEAKNDGRNRAT 301 >gi|224373365|ref|YP_002607737.1| inner membrane protein YcdT [Nautilia profundicola AmH] gi|223589588|gb|ACM93324.1| inner membrane protein YcdT [Nautilia profundicola AmH] Length = 411 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 101/202 (50%), Gaps = 12/202 (5%) Query: 62 EYILVENLSLV--IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 EY L++ +S++ II + + + I I+ +L +I + S ID L+ + N F Sbjct: 213 EYALIKKISMIFNIILLGLFIFTYIIIYLIILKLDKKDKQIIESSYIDELTQIFNRKKFN 272 Query: 120 SSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 + + S + ++ DID+FK+IND GHPVGD V+ LS + + R Sbjct: 273 TDIKNNIKNSDTQTPYLMLIDIDHFKKINDTHGHPVGDYVLEQLSKLISDNIRSNDKFYR 332 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 +GGEEFA + S ++ A ++KIIEN + ITIS G + E Sbjct: 333 IGGEEFAIISNQKSNEDEMKFAEKIKKIIENYNFEKAGD----ITISIGFTKYQPNESYH 388 Query: 235 TIIYRADQALYVAKKSGRNRVV 256 RAD+ALY AKK+ RN +V Sbjct: 389 KWYKRADEALYEAKKT-RNTIV 409 >gi|119493972|ref|ZP_01624532.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] gi|119452293|gb|EAW33489.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] Length = 328 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 11/182 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDY 138 S ++ ++L + ++ Q++ +D L+ + N F L S ++LS ++ D+D+ Sbjct: 144 SRTLTEQLETANQKLEQIAALDSLTQIANRRRFDQGLHSEWKRLSRERLPLSLILCDVDF 203 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAN 197 FK ND +GH GD + ++ + P V R GGEEFA + Q A +A Sbjct: 204 FKAYNDTYGHRAGDLCLQQVAQTICEKVQRPADLVARYGGEEFAIILPNTQLQGAVKVAE 263 Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254 D+R + +I + +S S +T+S G+A +S +I AD+ALY AKK+GR+R Sbjct: 264 DIRHSLHAIEIEHPNSRVSNFVTLSLGVASLIPNHYLSEDFLIGEADRALYEAKKAGRDR 323 Query: 255 VV 256 VV Sbjct: 324 VV 325 >gi|39936853|ref|NP_949129.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009] gi|39650710|emb|CAE29233.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris CGA009] Length = 379 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 17/177 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-----------SAFISSLGSYNEKLSIVFFDIDYF 139 +EL + + +LS D L+G+ N ++ + SLG S++ D+D+F Sbjct: 206 QELRQANAALGRLSTTDPLTGVFNRRYLDELIEQETASLVPSLGQ-----SVLMIDVDHF 260 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K ND+ GH GD + + + + V R GGEEFA G E E A L Sbjct: 261 KLFNDHGGHAAGDSCLQQIVTAVRRNLRSCDVVVRYGGEEFAVVLPGLDEAELRETAERL 320 Query: 200 RKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + QI + G +TIS GIA E ++ I RADQ+LY AK++GRNRV Sbjct: 321 CHAVSDLQIPHPGLGQGRVVTISVGIAPPVPAETLADAIQRADQSLYRAKRAGRNRV 377 >gi|89092440|ref|ZP_01165394.1| sensory box/ggdef family protein [Oceanospirillum sp. MED92] gi|89083528|gb|EAR62746.1| sensory box/ggdef family protein [Oceanospirillum sp. MED92] Length = 505 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 12/170 (7%) Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +LS D L+ L N +F I +N +++ D+D+FK+ ND +GHP GDK Sbjct: 328 KKLSITDKLTTLPNRRSFEEVLQREIKQAYRHNRPITLAILDVDFFKRYNDTYGHPQGDK 387 Query: 154 VIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 + ++D ++ P F R+GGEEFA Q++ + + +R+ +E +I S Sbjct: 388 ALRMVADCILECLRRPTDFAFRIGGEEFAIVIADQDLQQSQVFLDSIREKVEALEIPHSK 447 Query: 212 SGPSIHITISAG-IAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFS 259 S S +TIS G R P ++Y AD+ALY+AK S RN+ V S Sbjct: 448 SDVSGFVTISIGAFWTRGSDNPDKALLYAEADKALYLAKNS-RNQCVVQS 496 >gi|23014533|ref|ZP_00054344.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 594 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 15/172 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ ID L+G+ N F +LG + L+++ D+D+FK ND++GH G Sbjct: 417 RLRHLAMIDGLTGIANRRTFDETLGQEWRRASRAGTPLALLMIDVDHFKAYNDHYGHQAG 476 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQIN 209 D+ + ++ L P V R GGEEF G + +A LA +R + E + Sbjct: 477 DECLKTVAATLAATAKRPADLVARYGGEEFGVILPGCTLTDAQTLAEKMRLAVAELHLPH 536 Query: 210 ISSGPSIHITISAG------IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S S +TIS G +A + ++I AD ALY AK SGRN V Sbjct: 537 LASQTSGEVTISIGVSCLNLVATQGDSLDTQSLIAEADTALYRAKTSGRNCV 588 >gi|268679033|ref|YP_003303464.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268617064|gb|ACZ11429.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 768 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 20/186 (10%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVF 133 L+GY + ++ R+ +LS D L+GL N + +S ++ SI+ Sbjct: 583 LIGYTA---IRTDITDKKRVEELSITDRLTGLYNRLKLDELFAHHLSIARRHHTPFSIIL 639 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DID FK +ND +GH VGD ++ + + + GR GGEEF S + A+ Sbjct: 640 LDIDKFKSVNDTYGHQVGDTILQEFALCVKAQIRSEDIFGRWGGEEFLLLLPNSPLENAS 699 Query: 194 ILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +LA LR + + SQ+ + T S G+A + +++ R D+ALY AK++ Sbjct: 700 LLAEKLRLCVASFSFSQVGMK-------TASFGVATFHEGDDEKSMMVRVDEALYRAKEN 752 Query: 251 GRNRVV 256 GRN+VV Sbjct: 753 GRNQVV 758 >gi|209546961|ref|YP_002278879.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538205|gb|ACI58139.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 642 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 13/179 (7%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L +S + L+ D L+G++N F S G N S++ DID FK ND Sbjct: 453 LRLSAEELKSLAETDGLTGMVNRRTFDEAFARETSGSGRRNMLFSLLMVDIDRFKAYNDT 512 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GHP GD+ + +S L P V R GGEEF +S + A I+A + + Sbjct: 513 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLA 572 Query: 205 NSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259 I S +T S G++ E P + ++ AD ALY AK GRNR++ S Sbjct: 573 QEDIVHSGSEFARVTASIGVSCATGAELRTNP-NRLLTEADAALYEAKTQGRNRILAHS 630 >gi|221068575|ref|ZP_03544680.1| diguanylate cyclase [Comamonas testosteroni KF-1] gi|220713598|gb|EED68966.1| diguanylate cyclase [Comamonas testosteroni KF-1] Length = 387 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 15/211 (7%) Query: 52 YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111 ++ L F G ILV SLV ++ I LL + G+ E RI+Q++ D L+ Sbjct: 174 FVNLAGFRG-TVILV---SLVEGAMAIMLLAMSMIGT---ERHRREERIAQIAARDPLTA 226 Query: 112 LLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 L N A + S +++ DID+FKQ+ND GH GD+++ L+D + Sbjct: 227 LDNRRALYLRAPQLLKQASPASPGALLLIDIDHFKQVNDLHGHDAGDRLLVSLADLIRGA 286 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGI 224 RLGG+EF G S A L DLR+ + + P + ++I A + Sbjct: 287 LPHGSLAARLGGDEFVILLRGISGAAAQALGQDLREAFAQQARTMFATPEPVSLSIGASL 346 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ E +S + RAD ALY +K+ GR+R+ Sbjct: 347 FDQPGME-LSHWLKRADDALYASKRKGRDRM 376 >gi|83859367|ref|ZP_00952888.1| GAF sensor diguanylate cyclase [Oceanicaulis alexandrii HTCC2633] gi|83852814|gb|EAP90667.1| GAF sensor diguanylate cyclase [Oceanicaulis alexandrii HTCC2633] Length = 341 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 20/163 (12%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G++ ++S + ++ L I FDID FK+IND +GH VGD+VI + Sbjct: 171 DQLTGVMARRHWVSMVKEEIQRAARNSNLLCIALFDIDRFKRINDAYGHAVGDQVIRNVI 230 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +GR+GGEEFA + +A + A R+ IE + G I IT Sbjct: 231 ATCKHELRAGSKLGRIGGEEFAILFTECALDQAVVAAERCRRAIERLTLTAPDGEDIEIT 290 Query: 220 ISAGIAERCHKEPI-------STIIYRADQALYVAKKSGRNRV 255 S G+A P+ +I AD+ALY AK GRNRV Sbjct: 291 ASFGVA------PLFSYALSPDELIELADRALYQAKSGGRNRV 327 >gi|117924947|ref|YP_865564.1| diguanylate cyclase [Magnetococcus sp. MC-1] gi|117608703|gb|ABK44158.1| diguanylate cyclase [Magnetococcus sp. MC-1] Length = 453 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 9/165 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI--------VFFDIDYFKQINDNFGHPVG 151 ++Q S D L+ + N F+ S+ + ++S+ + DID+FK IND +GH G Sbjct: 287 LAQESGRDPLTKVYNRR-FLDSVVKHEMEVSMRHEIRFGFLLCDIDHFKTINDTYGHDAG 345 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ +++L +V R GGEEF S Q LA +R IE ++ Sbjct: 346 DAVLQQFAERLSSAARVNDYVFRFGGEEFLFVYGDMSPQRLEHLAEKVRHCIEQELFDLP 405 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SG IHIT S G A + D+ALY AK SGRNR + Sbjct: 406 SGEKIHITASFGGAVHDGNPNFHKTLKLTDEALYEAKHSGRNRCI 450 >gi|313682667|ref|YP_004060405.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313155527|gb|ADR34205.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 582 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 10/168 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDN 145 EL +Y ++ +++ D L+ + N F S+L E+ S++ FDID+FK +ND Sbjct: 413 ELNEAYEKMEKIALTDTLTEIYNRYYFNSALQNEISRAKRYERFSLLMFDIDHFKVVNDT 472 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH VGD V+ +++++ R+GGEEF ++ + A + +R IE Sbjct: 473 YGHNVGDIVLRMIAERVKSCLRESDIFARVGGEEFMIILPRTTLEMAKEVGERIRTTIE- 531 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ G ITIS G+ E + I+ R D ALY AK +GRN Sbjct: 532 --MHTFDGIG-KITISLGLVTYRDDESFAEIVKRVDTALYKAKNNGRN 576 >gi|260776218|ref|ZP_05885113.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450] gi|260607441|gb|EEX33706.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450] Length = 335 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 15/239 (6%) Query: 27 FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86 F + IFF+ +IA+ I F FY+ L+ + +I+ TI L + Sbjct: 103 FPALYHIFFNRYIASAI----TFAFYLVAISILASYPPLINSTPYTLINFTIPYFLIWAI 158 Query: 87 GSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141 + +++ ++S + +D L+G N A + + S N L +V FD+D+FK+ Sbjct: 159 SFVHEDMQTKIKGKLSDAALLDPLTGAKNRLA-LEADTSDNPDLVHNHYLVHFDLDHFKR 217 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +NDN+GH GD V+ ++ + F R+GGEEF ++ A +AN LR+ Sbjct: 218 VNDNYGHAAGDTVLKMVAKIVGQQVRQDAFY-RVGGEEFCTIFSAPDKESAFSIANALRE 276 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257 + + I+I ++ +T+S G+ E +E I + D ALY AK GRN+V+ Sbjct: 277 KLSQTPISIGD-QTLQVTLSGGLCELVVEEGTVRIDETMKITDAALYQAKAQGRNQVIA 334 >gi|271501072|ref|YP_003334097.1| diguanylate cyclase [Dickeya dadantii Ech586] gi|270344627|gb|ACZ77392.1| diguanylate cyclase [Dickeya dadantii Ech586] Length = 471 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 22/193 (11%) Query: 85 ISGSILKELFISYN---------RISQLSRIDCLSGLLNHSAFISSLGSYNEKL------ 129 I+ +I L ++ N R+ + + D L+ L+ F +L ++++ + Sbjct: 279 IAATIFSPLMMATNARTIRQLNARLLRQASHDFLTNTLSRYGFTEALSTHDQNIKSQQDA 338 Query: 130 -SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +I+ DID FK IND+FGH GD+++ +++ + V R+GGEEFA S Sbjct: 339 VNIMLIDIDNFKNINDSFGHDCGDEILRQVANVIQRTVSAQGLVSRIGGEEFAVVCFNYS 398 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTI---IYRADQA 243 LA++LR+ I+++ + + + + +T+S GI A+ K + T+ AD+ Sbjct: 399 PPAFYRLADELRQTIQHT-VFLFNQQHVPVTVSIGIAHAQVAGKHLVDTVHELFPLADKN 457 Query: 244 LYVAKKSGRNRVV 256 LY AK+ GRNR + Sbjct: 458 LYTAKREGRNRTI 470 >gi|119472331|ref|ZP_01614470.1| sensory box protein [Alteromonadales bacterium TW-7] gi|119444954|gb|EAW26251.1| sensory box protein [Alteromonadales bacterium TW-7] Length = 670 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 8/159 (5%) Query: 107 DCLSGLLNHSAF---ISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+ L N F I SL ++N +++F D+D FK++ND+ GH GD ++ ++++L Sbjct: 250 DGLTDLPNRRYFYEKIQSLINTHNTNFALIFIDLDGFKEVNDSLGHDYGDLLLHQVANRL 309 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITIS 221 + RLGG+EF ++ E AA +AN ++ + S I + ++++T S Sbjct: 310 KACICEQDIIARLGGDEFTLILQNVTDLERAAKVANSVQHALLTS-IQVKK-ETVYVTAS 367 Query: 222 AGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 GI H + + ++ RADQA+Y++KK GRNR FS Sbjct: 368 IGITLYPEHGKTVEELVKRADQAMYLSKKKGRNRYEFFS 406 >gi|52841291|ref|YP_095090.1| sensory box/GGDEF family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628402|gb|AAU27143.1| sensory box/GGDEF family [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 506 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 13/180 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 LK+L ++S+L+ D LS L N F I+ Y L+++ D+D+FK + Sbjct: 61 LKDLESVQKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNV 120 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201 ND FGH VGD ++ ++ +L V RLGG+EFA ++ Q+A ++AN++ Sbjct: 121 NDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNM-- 178 Query: 202 IIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I + Q + G ++ I +S GIA E I T+ AD ALY AK+ GRN F+ Sbjct: 179 IQKMGQPFLIKGHTVMIGLSIGIAYFPDAGDEAI-TLRKNADIALYNAKECGRNNCQIFT 237 >gi|226356554|ref|YP_002786294.1| diguanylate cyclase [Deinococcus deserti VCD115] gi|226318544|gb|ACO46540.1| putative Diguanylate cyclase (GGDEF domain protein) [Deinococcus deserti VCD115] Length = 382 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 8/163 (4%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+G N A + +L E+ +++ FDID+FK++ND GH GD V+ ++ Sbjct: 220 DALTGAANRRAAEERLQTLHRAGERYTVILFDIDHFKRVNDEHGHATGDLVLVNVTRCAR 279 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + F R GGEEF ++E L LR + N + GP +T G Sbjct: 280 QLLPDSAFFARWGGEEFLIILPSLPKEEVYELLRTLRAELRNQ----TFGPQKGVTACFG 335 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 +A E I+ RAD+A+Y K GRN V FS + T Sbjct: 336 VAHVRPGETPEEIVARADEAMYARKNRGRN-GVEFSTLTPETA 377 >gi|163793349|ref|ZP_02187324.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain [alpha proteobacterium BAL199] gi|159181151|gb|EDP65666.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain [alpha proteobacterium BAL199] Length = 461 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 17/169 (10%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+GL N AF + ++ +S+V D+D+FK +ND +GH +GD Sbjct: 293 LERLATTDPLTGLSNRRAFLMRAREEVERAVRHDRPMSVVMIDVDHFKSVNDRYGHDIGD 352 Query: 153 KVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 V L D V G G R GGEEF ++ A LA +R E + + Sbjct: 353 LV---LQDVAATVQGALRNSGDVAARFGGEEFVLLLPETTVSGAQQLAERIRVAFERTAV 409 Query: 209 NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G ++ T S G+ I T++ RAD ALY AK++GRNRV Sbjct: 410 ETEQG-AVRFTASFGVDVFRSDMDTGIDTVLKRADDALYRAKEAGRNRV 457 >gi|119476912|ref|ZP_01617193.1| hypothetical protein GP2143_10177 [marine gamma proteobacterium HTCC2143] gi|119449719|gb|EAW30956.1| hypothetical protein GP2143_10177 [marine gamma proteobacterium HTCC2143] Length = 316 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 79/160 (49%), Gaps = 11/160 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD---KVIA 156 D L+G N A ++L + + LS++ DID FK+IND +GH GD K +A Sbjct: 146 DPLTGTGNRMAMENTLTREVAIALRHKQPLSMLVVDIDAFKKINDIYGHAAGDCVLKNVA 205 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 Q + R GGEEF ++ A ILA +R+ IE I SI Sbjct: 206 RTLTQCSRDTDSTYRAYRFGGEEFVLLLNNTNRDGAVILAERIREGIE-EMITTCEEKSI 264 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 HIT S G++ E S + RAD+ALY AK GRN+V+ Sbjct: 265 HITASIGVSTLRTGESASQLFDRADKALYTAKDDGRNQVI 304 >gi|95928351|ref|ZP_01311099.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95135622|gb|EAT17273.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 526 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 109/237 (45%), Gaps = 18/237 (7%) Query: 32 SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISL-LLGYISGSIL 90 S++ S I +FI I + + G F L L + T +L L + Sbjct: 288 SLYHSALICLGVFIITIIVLHAGTGFFLQRVKQLQSQLETKVFRRTQALQTLNEKLSQEI 347 Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQIN 143 +E S + ++S D L+ + N F + + EK +S++ DIDYFK N Sbjct: 348 RERKRSQKALQKMSENDMLTNIYNRRKFNTYFSREWDAALREKRVVSLLMIDIDYFKNYN 407 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D++GH GD + ++ L P FV R GGEEF +S A LA LR Sbjct: 408 DHYGHLAGDDALIAVAATLKNKLTRPRDFVARYGGEEFVCLLPETSMDAAIYLAEKLRLE 467 Query: 203 IEN----SQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRN 253 I+ + ++++G HITIS G+A + +I +AD+ALY AK++GRN Sbjct: 468 IQKLNYVHEYSVAAG---HITISVGVASAIPTAGQAKEDLIDQADKALYRAKEAGRN 521 >gi|254183238|ref|ZP_04889830.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 1655] gi|184213771|gb|EDU10814.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 1655] Length = 688 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IN + GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINGSLGHPAGDEVLKAFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A D+ + + + N G ++ +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+SGR Sbjct: 406 AAKRSGR 412 >gi|167565960|ref|ZP_02358876.1| putative transmembrane transcriptional sensor regulator [Burkholderia oklahomensis EO147] Length = 490 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 16/170 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N A +L + L+I+F DID+FK+ ND +GH VGD Sbjct: 317 LARLAGTDSLTGLHNRRALDETLEREWRRAVCGERPLAILFVDIDHFKRYNDTYGHQVGD 376 Query: 153 KVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 V+A +S Q G V R GGEEF + A ++A +R + I Sbjct: 377 DVLATVSRCIAQQAARLGD--VVARYGGEEFVVVLPDTPRGGALVVAERVRMGVRMLGIE 434 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G+A + ++ ++ ADQALY AK GRNRV Sbjct: 435 HEGSEVGFVTVSVGVAVWQPDGTPAPHVAAVVEAADQALYQAKAGGRNRV 484 >gi|192292680|ref|YP_001993285.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] gi|192286429|gb|ACF02810.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 379 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 17/177 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-----------SAFISSLGSYNEKLSIVFFDIDYF 139 +EL + + +LS D L+G+ N ++ + SLG S++ D+D+F Sbjct: 206 QELRQANAALGRLSTTDPLTGVFNRRYLDELIEQETASLVPSLGQ-----SVLMIDVDHF 260 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K ND+ GH GD + + + + V R GGEEFA G E E A L Sbjct: 261 KLFNDHGGHAAGDSCLQQIVTAVRRNLRSCDVVVRYGGEEFAVVLPGLDEAELRETAERL 320 Query: 200 RKIIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + QI G +TIS GIA E ++ I RADQ+LY AK++GRNRV Sbjct: 321 CHAVSDLQIPHPGLGQGRVVTISVGIAPPVPAETLADAIQRADQSLYRAKRAGRNRV 377 >gi|149194244|ref|ZP_01871341.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus TB-2] gi|149135419|gb|EDM23898.1| diguanylate cyclase (GGDEF domain) [Caminibacter mediatlanticus TB-2] Length = 536 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 14/166 (8%) Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+ L N + I++ N+K++ V D+DYFK++ND +GH VGD ++ L Sbjct: 374 IDPLTKLYNRRFLENILNKIIANADRTNQKVAFVMIDMDYFKKVNDTYGHDVGDMILKQL 433 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIH 217 ++ L V R GGEEF ++E +RK IE + I G I Sbjct: 434 ANILKSSIRESDIVVRFGGEEFLIILNNIKDKECLFKTLEKIRKKIEEYEFQIPQG-KIK 492 Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 TIS G + + C+ P I AD ALY AK SGRN++V F + Sbjct: 493 KTISMGASLYPDTCN-SPWQC-IKNADIALYKAKNSGRNKIVIFEN 536 >gi|119775488|ref|YP_928228.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119767988|gb|ABM00559.1| GGDEF domain-like protein [Shewanella amazonensis SB2B] Length = 288 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 7/159 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 + +++ D L+G LN AF + +++ D+D+FK+IND +GH GD V+ L+ Sbjct: 130 LKKIAATDPLTGALNRRAF-KAPKTHSGSTVFALVDVDHFKRINDTYGHDAGDFVLVELA 188 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + R GGEEF + +A+ LR+++E+S N+ +G +I+IT Sbjct: 189 KLISNHIREDDQFFRWGGEEFLLEFRQAELAQASKRMEALRQLVESSHFNL-NGQAINIT 247 Query: 220 ISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255 ISAG+ C + + + AD+ALY AK SGRNR+ Sbjct: 248 ISAGLT--CVSPNHGGLEKALKAADEALYRAKDSGRNRI 284 >gi|327482752|gb|AEA86062.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 621 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 20/162 (12%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +A+ L Y L + D+D+FK++ND +GH GD+V+ + Sbjct: 464 DPLTGLPNRAAWNERLDLEFARWQRYGGDLLLAVLDVDHFKRVNDGYGHLAGDRVLKIIG 523 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------G 213 +L F+ R GGEEF L ++ EA R+++E + +I S G Sbjct: 524 TELQKRLRKTDFIARFGGEEF-VVLLPNTPYEAG------RQLMETLRESIGSCPFHFKG 576 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+SAG+ + RAD+ALY AK SGRNRV Sbjct: 577 ERVAITLSAGLTAFVIGDTAERAFERADRALYRAKDSGRNRV 618 >gi|300867777|ref|ZP_07112421.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] gi|300334244|emb|CBN57593.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] Length = 434 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 18/213 (8%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 G+ + LE L++ L++ L LG + ++L + + QL+ +DCL+ + Sbjct: 224 GVRKWEQLEINLLQELAM-------QLALGIQQSQLYQQLKEANVELHQLATVDCLTQIA 276 Query: 114 NHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N F L S+ +K LS++ DID+FK ND GH GD+ + ++ + V Sbjct: 277 NRRRFDEYLHQEWWRLSHEQKPLSLILCDIDFFKLYNDACGHQAGDRCLKQVAAAIRAVL 336 Query: 167 G-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI 224 + V R GGEEFA + A +A +R I++ +I + P +IT+S G Sbjct: 337 KHSADLVARYGGEEFAIILPNTDAITALSIAETIRSTIKDMRIVHRGLAPDRYITLSLGT 396 Query: 225 AERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 IS +I AD+ALY AK+ GR+RV Sbjct: 397 TTVVPGPKISPERLISAADRALYSAKEQGRDRV 429 >gi|255028253|ref|ZP_05300204.1| hypothetical protein LmonL_01599 [Listeria monocytogenes LO28] Length = 352 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131 +LL+ Y I K + N +++ + D L+ L N F G + LS+ Sbjct: 161 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSL 219 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190 DID+FK+IND GH G+ V+A S L F R+GGEEFA + Sbjct: 220 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 279 Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247 +AA++A+ R+ +E ++ N +SG +T+S G+A + ++ ADQALY A Sbjct: 280 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 336 Query: 248 KKSGRNRVVC 257 K++GRN++ Sbjct: 337 KQNGRNQIAV 346 >gi|217972536|ref|YP_002357287.1| diguanylate cyclase [Shewanella baltica OS223] gi|217497671|gb|ACK45864.1| diguanylate cyclase [Shewanella baltica OS223] Length = 584 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 18/196 (9%) Query: 74 ISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS-------Y 125 + +T +L L + S+ E SY ++ ++ D L+G N L + Sbjct: 382 MPVTDNLELQQMVNSL--ETLKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDH 439 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184 N L I+ FDID FKQ ND +GH GD+ + + + + P + R GGEEF Sbjct: 440 NMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVL 499 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEP----ISTIIYR 239 S +E A LR+ I + +I P I TISAGI C + P +++I R Sbjct: 500 PSSPLEEVYQFAERLREKIISLEIPHEDSPHAGILTISAGIT--CWQLPQQLDANSLINR 557 Query: 240 ADQALYVAKKSGRNRV 255 AD+ALY AK +GRNR Sbjct: 558 ADEALYHAKLTGRNRT 573 >gi|15966552|ref|NP_386905.1| hypothetical protein SMc04015 [Sinorhizobium meliloti 1021] gi|15075823|emb|CAC47378.1| Diguanylate cyclase [Sinorhizobium meliloti 1021] Length = 307 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 9/162 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDK 153 + S++D L+ + N + L + + + DIDYFK IND +GH GD+ Sbjct: 129 RASQVDELTSVPNRRYTMERLNEFIRNCAENPHMWGCVAIIDIDYFKAINDRYGHHRGDE 188 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + Q+ GR+GGEEF ++ EA ++ + L I N++ +S+ Sbjct: 189 VLLDFARQMQEFVRRSDCFGRIGGEEFMLILPDTTVGEANLILDRLLDKIRNARP-LSNI 247 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P T S G+AE + + I RAD+ALY+AK+ GR+RV Sbjct: 248 PEFFYTCSVGLAEYREGDSVGDIYSRADEALYIAKREGRDRV 289 >gi|300693464|ref|YP_003749437.1| signal transduction ggdef domain protein [Ralstonia solanacearum PSI07] gi|299075501|emb|CBJ34794.2| putative signal transduction ggdef domain protein [Ralstonia solanacearum PSI07] Length = 372 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 12/169 (7%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 F + +++ + D L+G L F + + E L ++ D+D+FK IND + Sbjct: 189 FAAETKLADRANTDHLTGRLARQRFFELGAFAVERARHHGEPLCALYLDVDHFKSINDAW 248 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD + LSD L V GRLGG+EF A L + AA+ D K + Sbjct: 249 GHAAGDDALVALSDALAGVLRPHDLFGRLGGDEF-AVLLPDCDLLAALSVVDRLK----T 303 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + P +T+S G A ++ ++ ++ AD AL AK+ GRNRV Sbjct: 304 AVAVHRHPMGPLTVSVGAAPLRPEQELAHLLADADLALIEAKRQGRNRV 352 >gi|16801092|ref|NP_471360.1| hypothetical protein lin2026 [Listeria innocua Clip11262] gi|16414527|emb|CAC97256.1| lin2026 [Listeria innocua Clip11262] Length = 375 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 15/201 (7%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123 VE + ++ +LL+ Y I K + N +++ + D L+ L N F Sbjct: 171 VEIVEYFLLFFVTALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFAWI 229 Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGG 177 + LS+ DID+FK+IND GH G+ V+A S L F R+GG Sbjct: 230 FNKSQKRKKALSLFIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGG 289 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPIST 235 EEFA ++AA++A+ LR IE ++ N SG ++T+S G+A + + Sbjct: 290 EEFAVLLQNVGTEQAALIADFLRDEIERAKFPYNPVSG---NVTVSIGVASMGYNYRTTE 346 Query: 236 IIYR-ADQALYVAKKSGRNRV 255 ++ ADQALY AK++GRN++ Sbjct: 347 SLFEAADQALYQAKQNGRNQI 367 >gi|307294112|ref|ZP_07573956.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1] gi|306880263|gb|EFN11480.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1] Length = 291 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 78/153 (50%), Gaps = 8/153 (5%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+G+ N F I +L + I DID+FKQ+ND GH GD+++A + +L Sbjct: 131 DALTGIANRRGFLAQIDTLPVTRRRGCIAIIDIDHFKQVNDQLGHEAGDRLLADFAARLS 190 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISA 222 VGR GGEEFA + E EA+ L +I E Q + + +T SA Sbjct: 191 SQTRRIDIVGRWGGEEFAIFYQDAIEDEASW---SLARIAERMRQEPVGAVHGQPVTFSA 247 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G+ P++ I AD ALY AK+SGR+R+ Sbjct: 248 GLCA-WRGGPVTDAIDMADDALYHAKRSGRDRI 279 >gi|291085577|ref|ZP_06353394.2| inner membrane protein YeaI [Citrobacter youngae ATCC 29220] gi|291071338|gb|EFE09447.1| inner membrane protein YeaI [Citrobacter youngae ATCC 29220] Length = 459 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 12/161 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D ++ + N F +L + K + ++ DID FK+IND +GH GD+VI + D + Sbjct: 302 DAMTKIYNRKLFYRTLKASLTKGAVCVMVLDIDKFKRINDTYGHQEGDRVIISIVDIINN 361 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-----IT 219 R+GGEEFA + EA ++A +R+ +EN ++ P+ + +T Sbjct: 362 SIRDTDIFARIGGEEFAILLKCKDKDEAIVVAERIRRNVENG----TTLPNAYDLKEKMT 417 Query: 220 ISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 IS G+ E ++ AD ALY AK SGRN+V +S Sbjct: 418 ISIGVYCSNATDESADKVVSYADAALYDAKNSGRNKVCYYS 458 >gi|170692722|ref|ZP_02883884.1| diguanylate cyclase [Burkholderia graminis C4D1M] gi|170142378|gb|EDT10544.1| diguanylate cyclase [Burkholderia graminis C4D1M] Length = 607 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 25/190 (13%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140 S + L + + L+ D L+GL N F+ L E L+++F D+D FK Sbjct: 394 SQMDALHVKQRELVHLATHDVLTGLPNRMLFMEKLERAIQDATRRREGLAVLFVDLDRFK 453 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA------I 194 QIND FGH VGDKV+ ++ +L V + V RLGG+EF G EAA I Sbjct: 454 QINDQFGHAVGDKVLVAVALRLKQVLHSADVVARLGGDEFIVLIEGPRSAEAAPGIASRI 513 Query: 195 LANDLRKIIENSQINISSGPSIHITI---SAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + +I+ + Q ++ G SI I+ +G AE ++ AD A+Y AK G Sbjct: 514 MTTLNEEIVMDGQ-GMTVGASIGISQFPDDSGTAE--------ELLLNADAAMYAAKSGG 564 Query: 252 RNRVVCFSDI 261 R + + D+ Sbjct: 565 RCAYLRYHDV 574 >gi|149193829|ref|ZP_01870927.1| diguanylate cyclase [Caminibacter mediatlanticus TB-2] gi|149135782|gb|EDM24260.1| diguanylate cyclase [Caminibacter mediatlanticus TB-2] Length = 350 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 12/159 (7%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N F I+ L + E+ S + DID FK+IND +GH +GD+V+ ++ Sbjct: 195 DPLTKLYNRLYFNNQINYLKNQYERNKKPFSAMLIDIDNFKKINDTYGHHIGDEVLKNVA 254 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + R GGEEF + + +A +A +RK IE+S I P +T Sbjct: 255 KIIKTTIRKTDIACRYGGEEFIILLPETEKSKAKEIAERIRKKIESS-IQYDDNP---VT 310 Query: 220 ISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 ISAG+ E K + I I+ D+ LYVAK++G+N+++ Sbjct: 311 ISAGVGEFNEKYKTIHHFIHDVDEGLYVAKRTGKNKIIT 349 >gi|15643732|ref|NP_228780.1| hypothetical protein TM0972 [Thermotoga maritima MSB8] gi|222100579|ref|YP_002535147.1| Sensory box histidine kinase [Thermotoga neapolitana DSM 4359] gi|4981511|gb|AAD36051.1|AE001760_1 conserved hypothetical protein, GGDEF domain [Thermotoga maritima MSB8] gi|221572969|gb|ACM23781.1| Sensory box histidine kinase [Thermotoga neapolitana DSM 4359] Length = 422 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 12/173 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 ++L EL ++ +++ D L+GL N + F + N LS + D+D FK Sbjct: 252 ALLFELHEEKEKLKEIAHRDSLTGLFNRAFFNEWIQDQVRKAQFQNVPLSFIMIDVDDFK 311 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 QIND +GH GDKV+ F++ + + F R GG+EF +S+Q+A +A+ +R Sbjct: 312 QINDTYGHLTGDKVLKFVARCISDSIRSSDFAVRYGGDEFLVVLYNTSKQQAERVASRIR 371 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + I N S+ + + IS G+AE + + +AD+ +Y K+ ++ Sbjct: 372 EKIRN-----SNELGVDVDISYGVAELNPGDNYLKFLQKADEEMYGMKREKKS 419 >gi|103486880|ref|YP_616441.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256] gi|98976957|gb|ABF53108.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256] Length = 363 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 9/172 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIN 143 K L S +R + + +D L+GL N AF + L + E LS+ F DID FK++N Sbjct: 184 KALRRSLDRARRDAELDYLTGLPNRRAFENLLDRHYREARAALEPLSVAFCDIDEFKKVN 243 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+VI ++D L + V R GGEEF G + EAA +D R+ + Sbjct: 244 DTHGHDAGDRVIKAIADTLARISDDKCHVARHGGEEFVMLFRGLTPTEAAQKLDDAREAL 303 Query: 204 ENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + ++ + P IT S G+A+ + AD ALY AK SGRN Sbjct: 304 ADRRLINRKTDEPFGQITFSGGVADVFGYGDARAALKAADAALYKAKTSGRN 355 >gi|47096495|ref|ZP_00234087.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854] gi|47015148|gb|EAL06089.1| GGDEF domain protein [Listeria monocytogenes str. 1/2a F6854] Length = 352 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131 +LL+ Y I K + N +++ + D L+ L N F G + LS+ Sbjct: 161 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSL 219 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190 DID+FK+IND GH G+ V+A S L F R+GGEEFA + Sbjct: 220 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 279 Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247 +AA++A+ R+ +E ++ N +SG +T+S G+A + ++ ADQALY A Sbjct: 280 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 336 Query: 248 KKSGRNRVVC 257 K++GRN++ Sbjct: 337 KQNGRNQIAV 346 >gi|326388934|ref|ZP_08210516.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370] gi|326206534|gb|EGD57369.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370] Length = 360 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 9/181 (4%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNE------KLSIVFFDIDY 138 S S ++ L +R + + +D L+GL N AF + Y+E LSI F DID+ Sbjct: 178 SESEVRTLRTRLSRAQRDAEVDYLTGLPNRRAFDAMFNRIYHETRNAVESLSIAFCDIDH 237 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK IND+ GH GD+VI +++ L + V R GGEEF G ++ E + Sbjct: 238 FKAINDSQGHETGDRVIKAVAETLDRLSNQNCHVARHGGEEFVLLFRGMTKHEVREKLDA 297 Query: 199 LRK-IIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R+ E +N + I IT S G+A+ + AD+ALY+AK+ GRN ++ Sbjct: 298 VRENFSERRFVNRRTDEPIGRITFSGGVADVFAYPSPRDAMRAADEALYLAKEQGRNSIM 357 Query: 257 C 257 Sbjct: 358 A 358 >gi|251778364|ref|ZP_04821284.1| ggdef/hd domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082679|gb|EES48569.1| ggdef/hd domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 569 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 9/171 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + ID L+ L NH F SL YN+ ++++F DIDYFKQ ND GH GD Sbjct: 190 LEDMINIDGLTELYNHRYFCDSLVENVKSGEEYNKPVAMIFIDIDYFKQYNDINGHQKGD 249 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211 V+ + + R GGEEF+ ++E++A +A +LRK IE + Sbjct: 250 YVLKKIGKIIKENSRKEDIPARYGGEEFSIILPETNEEKALNIAENLRKSIETAYFEGEE 309 Query: 212 SGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261 + P+ +T+S G++ +K +I AD ALY AK +NRV ++ I Sbjct: 310 NQPNGKVTVSIGVSVYPYKAKNDVELIKSADDALYRAKFFYKNRVEVYTSI 360 >gi|190891271|ref|YP_001977813.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190696550|gb|ACE90635.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 417 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 14/177 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 S + ++ D L+G+LN + E+ ++++ FD+D+FK++ND FGH Sbjct: 208 SERHLRTMTLTDSLTGVLNRRGLLGYFEPSQERAHGEQRQVAVILFDLDHFKRVNDRFGH 267 Query: 149 PVGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD V IAF + G GR+GGEEFAA A + + EA +A +R E + Sbjct: 268 QAGDAVLIAFARMARQYIPGN--IFGRMGGEEFAAFAAVADQMEAEAIAEAIRT--EFCR 323 Query: 208 INISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +++G +I +T+S GIA + I +I AD+ALY AK +GRN V F + E Sbjct: 324 LPVATGEAIVPVTVSIGIALASSIDANIDKLISAADRALYAAKAAGRNCTVTFGETE 380 >gi|146311566|ref|YP_001176640.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638] gi|145318442|gb|ABP60589.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638] Length = 720 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 109/205 (53%), Gaps = 12/205 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------G 123 +V+++ + LL +S L +L ++ +++R D LS L N A I L G Sbjct: 266 QIVVLASALILLFILVSSVGLYKLARGESQARRVARTDWLSHLPNRRALIEELERVSLRG 325 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + K ++VF D+D FK +ND +GH VGD++I L+ L + R+GG+EFA Sbjct: 326 DIDVK-TVVFIDLDGFKDVNDIYGHDVGDELIILLAKALRERVPQGGMLARMGGDEFAMT 384 Query: 184 ALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RAD 241 G S+ +A AND+ + ++ + I +IHI+ S G+A + S+ ++ RAD Sbjct: 385 IGGDHSQAQALTFANDVLAFL-DAPVRIGE-RTIHISASIGLASGTLIDCTSSELFRRAD 442 Query: 242 QALYVAKKSGRNRVVCFSDIENNTC 266 A+Y +K +G+ R+ + D E N+ Sbjct: 443 IAMYHSKITGKGRITQY-DAELNSA 466 >gi|117620072|ref|YP_858398.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561479|gb|ABK38427.1| fog: GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 495 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 16/193 (8%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYN 126 LV+++ I L S + EL + R+ +L+ D ++G+LN AF+ L + Sbjct: 293 GLVLMAYIIQLRRAVASRT--AELIQANARLERLAGTDSMTGILNRRAFLPLLEQRLASG 350 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA----A 182 + +++ FD+D FK IND+FGH VGD+V++ + Q+ V R+GGEEF Sbjct: 351 QASALLLFDLDRFKGINDHFGHGVGDEVLSAMVAQVQRVLPASALFARIGGEEFCISLLV 410 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRA 240 A + + +Q AA + ++ NS +S ++ I+IS G ++ +A Sbjct: 411 ADMATLQQWAARIGREV-----NSHKLPTSAGALGISISTGAVWVPAGGGAEGRRVLLQA 465 Query: 241 DQALYVAKKSGRN 253 DQ +Y AK GRN Sbjct: 466 DQLMYGAKSQGRN 478 >gi|329901535|ref|ZP_08272843.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327549078|gb|EGF33679.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 403 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 94/196 (47%), Gaps = 18/196 (9%) Query: 80 LLLG--YISGSILKELFISYNR----ISQLSRIDCLSGLLNHSAFIS---SLGSYNE--K 128 LL G +I+ S + L ++ R I + + D L+GL N +A L + + + Sbjct: 200 LLFGAVFIAASAVTFLAAAHERQRSGIEENALRDGLTGLYNRAALFRIARELDATRDATR 259 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 ++V DIDYFK IND GH GD V+A + + + V R GGEEF S Sbjct: 260 YAVVMLDIDYFKDINDRHGHSGGDVVLAQAAALIASLARKADAVFRYGGEEFCVLLYDSG 319 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER-------CHKEPISTIIYRAD 241 +QEA + + S N+ G + T SAG A R +E ++++ RAD Sbjct: 320 QQEAEHFSARVVGAAGRSVANLPDGSIVPFTFSAGYATRSTATTHGAARELFASVLERAD 379 Query: 242 QALYVAKKSGRNRVVC 257 ALY AK+ GRN+ V Sbjct: 380 LALYRAKRGGRNQSVA 395 >gi|307130413|ref|YP_003882429.1| hypothetical protein Dda3937_03022 [Dickeya dadantii 3937] gi|306527942|gb|ADM97872.1| hypothetical protein Dda3937_03022 [Dickeya dadantii 3937] Length = 466 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 22/193 (11%) Query: 85 ISGSILKELFISYN---------RISQLSRIDCLSGLLNHSAFISSLGSYNEKL------ 129 I+ +I L ++ N R+ Q + D L+ L+ F +L + + + Sbjct: 274 IAATIFSPLMMATNARTIRQLNARLLQQASHDFLTETLSRYGFSEALTAQDRSIKALQNA 333 Query: 130 -SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +I+ DID+FK IND+FGH GD+++ ++ + + V R+GGEEFA S Sbjct: 334 VNIMLIDIDHFKNINDSFGHDCGDEILRQVAGVIKQAVPSQGLVSRIGGEEFAVVCFNYS 393 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQA 243 LA+ LR+ I+ + + P + +T+S GIA + + + AD+ Sbjct: 394 PSAFYRLADGLRQTIQQTPFMFNQQP-VPVTVSIGIAHAPTSGKYLVDTVHELFPLADKN 452 Query: 244 LYVAKKSGRNRVV 256 LY AK+ GRNR + Sbjct: 453 LYTAKREGRNRTI 465 >gi|218671310|ref|ZP_03520980.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56] Length = 357 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 14/178 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL S +R + + D L+GLLN F I++ + ++L+ +F D+D FK IND Sbjct: 97 ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDSKIAAADAAGQELACLFVDLDRFKWIND 156 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203 N GH GD+ + L +L RLGG+EFA +E+ A + + I Sbjct: 157 NMGHAAGDRALIELVARLKTHLAPSDEAARLGGDEFAILLPAKDAEKRAKAMCEQIASIF 216 Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 E P +H++ S GIA H S ++ ++D A+Y K+ G+N F + Sbjct: 217 E-----TPFAPDMHLSASIGIAIYPHHAAAASELLQKSDMAMYAKKRDGKNGAQLFDN 269 >gi|148257974|ref|YP_001242559.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] gi|146410147|gb|ABQ38653.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] Length = 411 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 14/199 (7%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 L++I +++SL G++ ++ + N ++ L+ +D L+G+ N + LG Sbjct: 191 LLLIFLSMSLNFGFLLMAVDRL----RNEVADLALLDDLTGVANRRHLMQRLGEECARAE 246 Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + +++ D+D FK INDN GH GD + + + R GG+EF Sbjct: 247 RSGKPFALLVIDLDGFKLINDNHGHAAGDACLQHFTLMAQTRLRPGDMLARTGGDEFCIL 306 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRAD 241 SS +E A++A + ++ + +G + I +S G+AE R ++ RAD Sbjct: 307 LPSSSLREGAMIARRILQVCRDDA-EACAGADVPIEVSIGVAEWTRDLGAFPDRVMARAD 365 Query: 242 QALYVAKKSGRNRVVCFSD 260 QALY AKK G+NR + + Sbjct: 366 QALYAAKKDGKNRYAVYQN 384 >gi|330825459|ref|YP_004388762.1| diguanylate cyclase [Alicycliphilus denitrificans K601] gi|329310831|gb|AEB85246.1| diguanylate cyclase [Alicycliphilus denitrificans K601] Length = 334 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 89/189 (47%), Gaps = 23/189 (12%) Query: 88 SILKELFISYNRISQL---SRIDCLSGLLNHSAFISSL------------GSYNEKLSIV 132 ++K +F+ Y L S D L+GLLN F G+ + + Sbjct: 133 DVVKGVFLVYQNYQNLLDYSERDALTGLLNRKTFEEQFARDAGSTPAADGGADLPRPWLA 192 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK +ND FGH GD+V+ +++ L + + R GGEEF + +A Sbjct: 193 VIDIDHFKSVNDRFGHLYGDEVLILVANVLRAHCKSQDRIFRFGGEEFVVLLRSVTLAQA 252 Query: 193 AILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + LR ++ P I HIT S G A P+ ++ RADQALY AK+SG Sbjct: 253 RQVFERLRAAMQAHAF-----PQIGHITASIGFAASQRGSPVE-VLGRADQALYHAKESG 306 Query: 252 RNRVVCFSD 260 RNR VCF D Sbjct: 307 RNR-VCFYD 314 >gi|293392985|ref|ZP_06637302.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291424519|gb|EFE97731.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 358 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 13/179 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDY 138 + +++ L+ +++S LS +D L+GL N + L N+ L+ +V DID Sbjct: 172 TQALVANLYDERDKLSDLSMLDPLTGLYNRRGLENKL---NQLLAPTAGRHFVVLLDIDR 228 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK NDN+GH +GD+ + ++ + + V R GGEEF SE AA LA Sbjct: 229 FKAYNDNYGHTMGDQALVQVAAAIRDAVRSRDIVVRYGGEEFLVLLTNVSEAYAAQLAER 288 Query: 199 LRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R+ + QI + + +T+SAGI+ + + + I AD ALY AK +GRN + Sbjct: 289 VRQRVLGLQIPHRFNQLATTTVTLSAGISA-LDQLDVKSAIRAADAALYQAKGNGRNTI 346 >gi|238782742|ref|ZP_04626772.1| Predicted diguanylate cyclase [Yersinia bercovieri ATCC 43970] gi|238716402|gb|EEQ08384.1| Predicted diguanylate cyclase [Yersinia bercovieri ATCC 43970] Length = 366 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 114/247 (46%), Gaps = 24/247 (9%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI----- 85 S+F FI+T+ N F + P L I +++ I IT +L+L I Sbjct: 110 LSLFTIFFISTIALSDNFIAFCLHTAP-AALTVIFLDDFQ-NIFRITFTLMLPLIGFSLH 167 Query: 86 ----------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----I 131 + ++ L+ + S LS ID L+ L N + L + + + Sbjct: 168 HLMSRRSDDFTRKLVAHLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYV 227 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK NDN+GH +GD+ + ++ + + V R GGEEF SE+ Sbjct: 228 LLLDIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEY 287 Query: 192 AAILANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 A+ LA +R+ + I + S +T+SAGI+ +++ + AD+ALY AKK Sbjct: 288 ASQLAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLASSLKAADEALYRAKK 346 Query: 250 SGRNRVV 256 GRN+V Sbjct: 347 DGRNKVA 353 >gi|192360000|ref|YP_001983306.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Cellvibrio japonicus Ueda107] gi|190686165|gb|ACE83843.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Cellvibrio japonicus Ueda107] Length = 1082 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 35/199 (17%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEK------------------- 128 +EL +Y ++ S D L+GL N S FI++ + E+ Sbjct: 844 RELEEAYRKLEAASLSDPLTGLKNRRFLSQFIAADVAMAERAYQNWLADRATGVEGPAPT 903 Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 L + D+D+FK +NDN GH GDKV+ LS L ++ R GGEEF Sbjct: 904 DADLIFMLLDMDHFKSVNDNHGHGAGDKVLEQLSRLLETAVRESDYLVRWGGEEFLIVVR 963 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH----KEPIS----TII 237 ++ EA +A +R+ + N + G + + S G A C+ + P + ++ Sbjct: 964 FANRTEAPEMAERIRQAVANYEFKPGDGQVLRRSCSMGFA--CYPFYPEAPTALRWEQVV 1021 Query: 238 YRADQALYVAKKSGRNRVV 256 AD+ALY AKKSGRNRVV Sbjct: 1022 DTADRALYAAKKSGRNRVV 1040 >gi|224500262|ref|ZP_03668611.1| hypothetical protein LmonF1_11524 [Listeria monocytogenes Finland 1988] gi|254899391|ref|ZP_05259315.1| hypothetical protein LmonJ_06244 [Listeria monocytogenes J0161] gi|254912470|ref|ZP_05262482.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936797|ref|ZP_05268494.1| GGDEF domain-containing protein [Listeria monocytogenes F6900] gi|258609392|gb|EEW22000.1| GGDEF domain-containing protein [Listeria monocytogenes F6900] gi|293590452|gb|EFF98786.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 375 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131 +LL+ Y I K + N +++ + D L+ L N F G + LS+ Sbjct: 184 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSL 242 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190 DID+FK+IND GH G+ V+A S L F R+GGEEFA + Sbjct: 243 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 302 Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247 +AA++A+ R+ +E ++ N +SG +T+S G+A + ++ ADQALY A Sbjct: 303 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 359 Query: 248 KKSGRNRVVC 257 K++GRN++ Sbjct: 360 KQNGRNQIAV 369 >gi|120609444|ref|YP_969122.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gi|120587908|gb|ABM31348.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 432 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 12/204 (5%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118 +V +SLV + I LL ++G+ E R++Q++ D L+ L N A Sbjct: 227 VVIQVSLVEGVMAIMLLAMSMTGT---ERHRREERMAQIAARDPLTALDNRRALYLRAPA 283 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 + S +++ DID FKQ+ND GH GD+++ LSD + RLGG+ Sbjct: 284 LLRQASPASPGALLLMDIDNFKQVNDLHGHDAGDRLLITLSDLIRSTLPIGALAARLGGD 343 Query: 179 EFAAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHITISAGIAERCHKEPISTII 237 EF +S A L +LR+ E + ++ + ++I A + ++ E +S + Sbjct: 344 EFVILLRDASPSAAQALGRELREAFSEQASTMFATPEPVSLSIGATLFDQPDAE-LSHWL 402 Query: 238 YRADQALYVAKKSGRNRV-VCFSD 260 RAD+ALY +K+ GR+R+ V SD Sbjct: 403 KRADEALYASKRQGRDRMEVVLSD 426 >gi|125974674|ref|YP_001038584.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum ATCC 27405] gi|256004128|ref|ZP_05429112.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM 2360] gi|125714899|gb|ABN53391.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum ATCC 27405] gi|255991876|gb|EEU01974.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM 2360] gi|316941798|gb|ADU75832.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM 1313] Length = 415 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 6/142 (4%) Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 G N+KLS++ DID FK+IND +GH GD V+ + ++ V R GGEEF A Sbjct: 272 GFSNQKLSVIMMDIDNFKRINDTYGHNAGDAVLVTFARVILRCLRQTDLVARYGGEEFIA 331 Query: 183 AALGSSEQEAAILANDLRKIIENS---QINISSGPSIHITISAGIAE-RCHKEPISTIIY 238 S + A +A +R+ I +IN P +I+ S G++ H + + +I Sbjct: 332 ILPSSDTKNAYDIAERIRESIAAEPMPKINDVQLP--NISCSFGVSTYPTHAKNKNDLIK 389 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD ALY AK++G+NRV+ +S+ Sbjct: 390 AADIALYKAKQAGKNRVITYSE 411 >gi|302187590|ref|ZP_07264263.1| GGDEF [Pseudomonas syringae pv. syringae 642] Length = 530 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 15/172 (8%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLIALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A + + I + QI + P + Sbjct: 396 RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILQAIRDEQIEHPASPFGIV 455 Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 TIS G+A +R E ++I AD+ALY AK GRNRV S+I T Sbjct: 456 TISLGVATFMGTDRQLDE--RSLIELADRALYAAKSQGRNRVNVASEIATGT 505 >gi|239995986|ref|ZP_04716510.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Alteromonas macleodii ATCC 27126] Length = 353 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 69/128 (53%), Gaps = 1/128 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS V DID+FK IND +GH +GD+V+ ++ + T V R GGEEF ++ Sbjct: 226 LSAVVVDIDHFKTINDTYGHDIGDEVLIHITRLMKEAVRTTDVVARTGGEEFLVLFPHAT 285 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 +A LA +RK+IE + + + IT S G+A + + +AD LY AK Sbjct: 286 LSQAVKLAEKMRKVIEANPF-VEGDVNHSITASFGVATALTDTNLHACLKQADDNLYKAK 344 Query: 249 KSGRNRVV 256 +GRNRVV Sbjct: 345 NAGRNRVV 352 >gi|218675362|ref|ZP_03525031.1| hypothetical protein RetlG_30229 [Rhizobium etli GR56] Length = 614 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 15/180 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145 L +S ++ L+ D L+G++N AF S N S++ DID FK ND Sbjct: 426 LRLSAEQLRNLAETDGLTGIVNRRAFDESFARETAGSARKNTPFSLLMVDIDRFKAYNDT 485 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GHP GD+ + +S L P V R GGEEF +S + A I+A + + Sbjct: 486 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLA 545 Query: 205 NSQINISSGPSIHITISAGIAERCH-----KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I S +T S GI+ C + + ++ AD ALY AK GRNR++ S Sbjct: 546 KENILHSGSEFGRVTASIGIS--CATGATLRASPNRLLAEADAALYEAKTQGRNRILAHS 603 >gi|197104776|ref|YP_002130153.1| stalked-cell differentiation controlling protein [Phenylobacterium zucineum HLK1] gi|196478196|gb|ACG77724.1| stalked-cell differentiation controlling protein [Phenylobacterium zucineum HLK1] Length = 454 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 15/170 (8%) Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N A + + + ++++ DID+FK+IND+FGH VGD+V Sbjct: 287 ELAVTDQLTGLHNRRYMQGQLEALMRRAAAGGDPVALLVIDIDHFKRINDSFGHDVGDEV 346 Query: 155 IAFLSDQL---VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + + +L V P+ R GGEEF +S ++A +A +R + S + Sbjct: 347 LREFAVRLASNVRAIDLPV---RHGGEEFVVVMPDTSLEDARRIAERIRLHVAGSPFRVM 403 Query: 212 SGPS-IHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259 G + +TIS G+A E S ++ RAD+A+Y AK GRNRV+ + Sbjct: 404 GGEELLSVTISIGVAAGAGGEDSSQALLKRADEAVYEAKSRGRNRVIARA 453 >gi|171057390|ref|YP_001789739.1| diguanylate cyclase [Leptothrix cholodnii SP-6] gi|170774835|gb|ACB32974.1| diguanylate cyclase [Leptothrix cholodnii SP-6] Length = 226 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 79/167 (47%), Gaps = 19/167 (11%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GL N F I + E ++ DID+FK IND GH VGD VI Sbjct: 31 LSSRDPLTGLPNRRQFEAALEQEIDRVARSGEPAMLLMLDIDHFKHINDTHGHAVGDLVI 90 Query: 156 ----AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 A L D + PM V R+GGEEFAA +A +R+ IE +I I Sbjct: 91 QAVGAALEDSV-----RPMDSVARIGGEEFAAVLPSCPAAFGHTVAERVRRNIEALRIAI 145 Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + G + +T S G A + + + RADQ LY AK GRNR Sbjct: 146 APGQIVTVTTSVGGAFAPQWVRSSGPLWLERADQQLYRAKSEGRNRT 192 >gi|148378360|ref|YP_001252901.1| signaling protein [Clostridium botulinum A str. ATCC 3502] gi|148287844|emb|CAL81910.1| putative signaling protein [Clostridium botulinum A str. ATCC 3502] Length = 895 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 14/170 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +I L+ D L+GL N I ++ NEK +++F D+D+FK IND GH VGD Sbjct: 470 KILGLAYYDSLTGLSNRKKIIETINKTINNYENEKFAVLFIDLDHFKSINDTLGHDVGDY 529 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209 V+ +S + ++ +GRLGG+EF ++ +E+ A + L I+ + + Sbjct: 530 VLEKVSARFKMLLSPKHKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 589 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + G SI I+I + ST++ AD A+Y AKK+G + +S Sbjct: 590 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNGGYKYEVYS 634 >gi|78047033|ref|YP_363208.1| putative signal transduction protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035463|emb|CAJ23108.1| putative signal transduction protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 507 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 18/180 (10%) Query: 96 SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145 S NR+ L+ D L+G+ N ++L E LSI F D+D FK++ND Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDEFKRVNDA 376 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203 GH VGD+V+ + L + T V R GGEEF L ++ +AA++ + L + Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTPADAALMVIERILAETA 435 Query: 204 ENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259 + GP +HIT SAG+A E I ++ AD LY +K GRNRV + Sbjct: 436 RTPMAQLKGGP-LHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494 >gi|304398743|ref|ZP_07380614.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pantoea sp. aB] gi|304353690|gb|EFM18066.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pantoea sp. aB] Length = 709 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 87 GSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFK 140 G I++++ Y R+ +L+ ID L+ L + SAF+ +G + +++ D+D FK Sbjct: 258 GMIIRDVTARYESEARLCELASIDMLTRLASRSAFMDQVGQLTKAAVPYTLLMTDLDGFK 317 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ++ND GH GD ++ +++Q+ V + + RLGG+EF G S EAAI A L Sbjct: 318 EVNDTLGHAAGDALLCHVAEQIRAVCASAVTAARLGGDEFVILLAGGS-AEAAITAERLI 376 Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253 ++ + P + + S GIA H S+++ AD ALY AK SG+ Sbjct: 377 AAVQ-TPFRYHDSPVV-VGASTGIASYPEHGRDPSSVMSAADLALYRAKASGKG 428 >gi|317130908|ref|YP_004097190.1| diguanylate cyclase/phosphodiesterase [Bacillus cellulosilyticus DSM 2522] gi|315475856|gb|ADU32459.1| diguanylate cyclase/phosphodiesterase [Bacillus cellulosilyticus DSM 2522] Length = 886 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 11/174 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK---LSIVFFDIDYFKQINDNFG 147 S ++ +L+ D L+GL N F L S N+K ++++F D++ FKQIND G Sbjct: 454 SEEKLQKLAYYDMLTGLPNRQHFQKYLESLLQSEANKKAPTIAVMFVDLNQFKQINDTLG 513 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+++ +S++L+ + + V RLGG+EF + ++E L+++ ++ Sbjct: 514 HKVGDELLKLVSNKLMKLEKEKIKVFRLGGDEFVIVLTEADKKEVKRFGGKLQRLF--AE 571 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I + S+++T S G++ + + ++ AD A+Y AK+ GRN + F Sbjct: 572 PIILNNMSLYVTASFGVSMYPKDGDTLDRLVRFADMAMYNAKEKGRNYIQFFDQ 625 >gi|262171860|ref|ZP_06039538.1| GGDEF family protein [Vibrio mimicus MB-451] gi|261892936|gb|EEY38922.1| GGDEF family protein [Vibrio mimicus MB-451] Length = 489 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ++L+ D ++GLLN L +N+ L+I DID FKQIND +GH +GD+VI ++ Sbjct: 332 AELAARDPMTGLLNRRGMEGFLQGKRHNQYLAIAVLDIDDFKQINDTYGHDMGDRVICYI 391 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +Q+ + V R GGEEF EQ I+ + +S + G Sbjct: 392 GEQIENHIRSSDAVARFGGEEFVVYVTAKEQEQIHRIMHRIFDAVCHDSTQILDQG---- 447 Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G+ E + + ADQ LYVAK SG+N++V Sbjct: 448 FTVSGGVEIIESKTELTFEELFKAADQKLYVAKSSGKNQLV 488 >gi|261212456|ref|ZP_05926741.1| sensory box/GGDEF family protein [Vibrio sp. RC341] gi|260838387|gb|EEX65043.1| sensory box/GGDEF family protein [Vibrio sp. RC341] Length = 607 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 20/175 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGH 148 NR+ +LS D L+ L N F ++ K+ + DID+FK+IND GH Sbjct: 438 NRLRELSEKDALTDLWNRRKFDQAIHLECAKIRRYPDIAQACLAIVDIDHFKKINDKLGH 497 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ +++ + FV R+GGEEFA +S +EA + N +R + Sbjct: 498 SEGDHVLRSVANGIQEQLRESDFVARIGGEEFAIIFPHTSVEEAERVLNRVR-------L 550 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIE 262 I+S +T+S G+ + C I Y RAD ALY +K SGRN++ + E Sbjct: 551 YIASIHQQKVTLSGGVTDLC---SIPDQSYKRADLALYESKSSGRNQIAVLTAAE 602 >gi|171849031|pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702 gi|171849032|pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702 Length = 358 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 12/168 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK ND FGH GD Sbjct: 167 LQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGD 226 Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + + R GGEEFA G+S A +LA +R+ +E+ QI + Sbjct: 227 EALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHD 286 Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P H+T+S G++ + +I ADQALY AK +GRN+V Sbjct: 287 QPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 334 >gi|123442661|ref|YP_001006638.1| putative inner membrane protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089622|emb|CAL12472.1| putative inner membrane protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 371 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 3/164 (1%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGD 152 +Y + + ID L+ L N S+ L S N + ++ D+D+FK +ND +GH GD Sbjct: 186 AYFAMKDRANIDKLTQLNNRSSADYRLNSINHNRQACGLLILDLDHFKSVNDTYGHDGGD 245 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ + L+ FVGR GGEEF Q +A +R+ +E+ + + Sbjct: 246 ILLTEVGKLLMTAVRDEDFVGRYGGEEFIIITHSHDPQAIKAVAERIRQRVESLDVQLPD 305 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + TIS G + + + D+ALY AK GRN+VV Sbjct: 306 GRKLKATISIGASLFLPGMSMLKALKMTDEALYQAKNQGRNQVV 349 >gi|116249205|ref|YP_765046.1| GGDEF/EAL domain-containing protein [Rhizobium leguminosarum bv. viciae 3841] gi|115253855|emb|CAK12250.1| putative transmembrane GGDEF/EAL domain protein [Rhizobium leguminosarum bv. viciae 3841] Length = 665 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 12/172 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+G+ N A L ++ ++ S+ D+D+FK+ ND +GH GD+ Sbjct: 242 ELSHTDYLTGISNRRALDRRLDECWAAWKDERRDFSVFLIDVDFFKRFNDRYGHQEGDRC 301 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + +++ L VV + +GR GGEEF + + A LA +R +E+ I Sbjct: 302 LTVIANALKAVVESSDGMIGRYGGEEFIVVMPAALPKVAMTLAEKIRMEVESLAIAHDER 361 Query: 214 PS--IHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 P +T+S G+A K E + I+ AD ALY AK SGRN + F + Sbjct: 362 PDDMSTVTVSIGVAFTREKVGEKVERIVREADLALYNAKASGRNCIRSFDPL 413 >gi|71734369|ref|YP_275090.1| GGDEF domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554922|gb|AAZ34133.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 604 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 15/172 (8%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 413 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 472 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A ++ + I + QI + P + Sbjct: 473 RVVEQCIRRPGDVAARYGGEEIAVVLPGTDESSARQVAENILQAIRDEQIEHPASPFGIV 532 Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A +R + ++I AD+ALY AK GRNRV S+I +T Sbjct: 533 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 582 >gi|310642768|ref|YP_003947526.1| diguanylate cyclase with gaf sensor [Paenibacillus polymyxa SC2] gi|309247718|gb|ADO57285.1| Diguanylate cyclase with GAF sensor [Paenibacillus polymyxa SC2] Length = 661 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 13/166 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDK 153 + + +L+ +D L+GL + + EK S++ DID FKQ+ND +GH GD+ Sbjct: 496 HAEVRRLANMDMLTGLYVRHYVDRIIQEHQEKDFCGSLILVDIDQFKQVNDTYGHQTGDE 555 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ +S+ + R GGEE A Q+A A +R +++ + Sbjct: 556 ILKSVSNIVRSATRDEDVCARWGGEELAIYLPQLGVQQALGYAEKIRSCVQH-----ETN 610 Query: 214 PSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 P +T+S GIAE E IS ++ YRAD ALY AK GRNR+V Sbjct: 611 P--QVTVSCGIAEWNWLDEQISIESLFYRADMALYEAKNEGRNRIV 654 >gi|281418855|ref|ZP_06249874.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum JW20] gi|281407939|gb|EFB38198.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum JW20] Length = 415 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 6/142 (4%) Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 G N+KLS++ DID FK+IND +GH GD V+ + ++ V R GGEEF A Sbjct: 272 GFSNQKLSVIMMDIDNFKRINDTYGHNAGDAVLVTFARVILRCLRQTDLVARYGGEEFIA 331 Query: 183 AALGSSEQEAAILANDLRKIIENS---QINISSGPSIHITISAGIAE-RCHKEPISTIIY 238 S + A +A +R+ I +IN P +I+ S G++ H + + +I Sbjct: 332 ILPSSDTKNAYDIAERIRESIAAEPMPKINDVQLP--NISCSFGVSTYPTHAKNKNDLIK 389 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD ALY AK++G+NRV+ +S+ Sbjct: 390 AADIALYKAKQAGKNRVITYSE 411 >gi|24372430|ref|NP_716472.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1] gi|24346407|gb|AAN53917.1|AE015529_1 GGDEF domain protein [Shewanella oneidensis MR-1] Length = 489 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 8/141 (5%) Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 H + ISS G+ + +V DID+FK+IND GH VGD ++ LS L V R Sbjct: 350 HRSEISSEGA----ICLVMLDIDFFKEINDTLGHAVGDNILMELSGVLQHCVRETDVVAR 405 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 GGEEF +S L + I++ + SG ++ +T S GIA+ + EP+ Sbjct: 406 WGGEEFVILCHQTSIDLVKTLCQRIAAAIKDYRF---SG-NVQLTCSFGIAKLVNNEPMQ 461 Query: 235 TIIYRADQALYVAKKSGRNRV 255 + RAD+ALY AK GRN++ Sbjct: 462 SCFERADKALYQAKALGRNQI 482 >gi|88800989|ref|ZP_01116539.1| GGDEF domain protein [Reinekea sp. MED297] gi|88776256|gb|EAR07481.1| GGDEF domain protein [Reinekea sp. MED297] Length = 402 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 24/172 (13%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+ +D L+G+ A L + +I D+D+FK ND +GH VGD+V+ ++ ++ Sbjct: 229 LAYMDELTGIPGRKALQKQLAGLGRRYAIAMLDVDHFKAFNDTYGHDVGDQVLRLVAARV 288 Query: 163 -VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE----------------- 204 V G + R GGEEF G + Q+A +R+ I Sbjct: 289 RAVSHGGRAY--RYGGEEFTIVFPGKTAQQAVPALESVRESIAGYTLQLRQEDRPDDDKV 346 Query: 205 -NSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +Q G +++TIS G+AE EP ++ ADQ LY AKK+GRN Sbjct: 347 GRNQRGKPKGRGVNVTISIGVAEPADDLTEP-KAVMKAADQLLYKAKKAGRN 397 >gi|238797532|ref|ZP_04641030.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969] gi|238718673|gb|EEQ10491.1| Diguanylate cyclase [Yersinia mollaretii ATCC 43969] Length = 397 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 18/181 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144 + L ++ ++ + D L+GL N + F L +E +++F D D FK+IND Sbjct: 209 EHLTQEHDSLAHRAAHDSLTGLANRAFFEGRLSRTLSDCKPSEHAAVLFLDGDRFKEIND 268 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKI 202 N+GH GD V+ ++D++ + V RLGG+EFA A + ++ I +N I Sbjct: 269 NYGHAAGDVVLTTIADRIRALLRETDLVARLGGDEFAVLLAPIHKTDDVLLIASN----I 324 Query: 203 IE--NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK---SGRNRVV 256 IE + I ++ G I ++S GIA H + ++ RAD+A+Y AKK SG RV+ Sbjct: 325 IESMSQPIVLADGREITTSLSIGIAIYPDHAQTPEALLQRADEAMYQAKKNIQSGGGRVI 384 Query: 257 C 257 Sbjct: 385 A 385 >gi|89055410|ref|YP_510861.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1] gi|88864959|gb|ABD55836.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1] Length = 664 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 25/185 (13%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNE-KLSIVFFDIDYFKQINDN 145 + EL + ++ L+R D L+G N S F++ L ++++++FDID FKQIND Sbjct: 231 VSELKRARDQARYLARRDQLTGCYNRSHLTRFVAELADAQATQVTLLYFDIDRFKQINDT 290 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--------AAAALGSSEQ--EAAIL 195 +GH +GD+V+ ++D+ + + V RLGG+EF AA+ L E+ +A Sbjct: 291 YGHVIGDRVLMAMADRAIQLTQDTDAVVRLGGDEFVVVLGATDAASRLERVERFFKALSA 350 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 D I NS++++ G S+ + + AD ALY+AK +GRNR Sbjct: 351 PTDFASITVNSRVSL--GVSVFDPTQTD---------VDVALRHADIALYLAKNTGRNRY 399 Query: 256 VCFSD 260 V + D Sbjct: 400 VVYDD 404 >gi|33601603|ref|NP_889163.1| hypothetical protein BB2626 [Bordetella bronchiseptica RB50] gi|33576040|emb|CAE33119.1| probable membrane protein [Bordetella bronchiseptica RB50] Length = 385 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 35/246 (14%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL--------------SLVIISI 76 +S +F+ ATV + + T YGL+ + L LV+ S+ Sbjct: 149 YSYWFAGVTATVAALGHALR-----TAVYGLQIEQTQGLLQSSVWNVAFLAIGVLVMPSM 203 Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKL 129 T+ +++ I +L E N+ D L+GLL+ A+ + L Sbjct: 204 TLGMIM-MIHDRMLAEREREANQ-------DFLTGLLSRKAWWREGERLCARALRTGRPL 255 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DID FKQ+ND GH GD V+ + + +GRLGGEEF A + Sbjct: 256 TLLALDIDRFKQVNDQHGHAAGDVVLRHFGSLATALLRSGDVIGRLGGEEFVALLPDTDG 315 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +A L + + + G ++ T S G+A+ + + ++ RAD ALY AK+ Sbjct: 316 DTGVSVAERLLASVRATPCS-HGGKALTYTFSGGVAQYRAGDTLPVLVERADAALYAAKQ 374 Query: 250 SGRNRV 255 +GR+R+ Sbjct: 375 AGRDRI 380 >gi|71900820|ref|ZP_00682938.1| GGDEF [Xylella fastidiosa Ann-1] gi|71729390|gb|EAO31503.1| GGDEF [Xylella fastidiosa Ann-1] Length = 333 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 20/163 (12%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G L A I LS+ F DID+FK+IND +GH GD + + Sbjct: 174 VDGLTGALTRVAIERRLERDIDDARQMGTPLSVAFIDIDHFKRINDEYGHAAGDACLRQV 233 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214 ++ +GR GG+E A G+ A R++ E ++ +SS P Sbjct: 234 VQRVRGWLRASDALGRHGGDELIAILPGADLAAA-------RRVAEGVRVAVSSQPFQFE 286 Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T+S G+A E I ++ RAD LY +K +GR+RV Sbjct: 287 CTRLRCTLSLGVASWLPDESIEALLQRADNGLYASKAAGRDRV 329 >gi|332307897|ref|YP_004435748.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175226|gb|AEE24480.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 563 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGD 152 + QLS +D L+G+ N A L + EK LS++ D+D+FK NDN+GH GD Sbjct: 387 LQQLSLLDGLTGIPNRRALDERLEHELKLATREKWPLSLLMVDVDFFKPFNDNYGHVAGD 446 Query: 153 KVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + + ++ L V + F R GGEEF + + A +A+ L + N+ + Sbjct: 447 EALVSIAQILESVAKRSGDFAARYGGEEFVFILPNTDQTGARSVASTLLNSVRNANLEHK 506 Query: 212 SGPSI-HITISAGIAERCHKEPISTIIYR--ADQALYVAKKSGRNRVVCFSDI 261 P+ HITIS GIA E + AD ALY AK++GR++ + + DI Sbjct: 507 YNPNTDHITISVGIATGLPGEAKDADYLQRLADHALYAAKQNGRDQAIHYLDI 559 >gi|331018266|gb|EGH98322.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 355 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 28/244 (11%) Query: 24 PHTFMIYF-SIFFSIFIATVIFIANIFLFYIGLTPFYGLE-----YILVENLSLVIISIT 77 P MI S ++ +F++ L +I L+P G++ Y+ + + + SI Sbjct: 99 PIALMIILCSTLLVVYTRDYLFVS--VLSWIILSPAQGIDTDSAAYVFM--MLFFVSSIA 154 Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------I 131 + ++L + L+++ +R +LS D L+ +LN A + +L +E+L+ Sbjct: 155 LGVVLNHTYTRTLRKVLTLESRFRELSLTDDLTDILNRRALMLAL---DEQLANNSGGYF 211 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID FK IND FGH GD+V+ ++ L G+ F GR+GGEEF S E Sbjct: 212 LMLDIDNFKTINDQFGHDAGDEVLRLMASCLQQTPGSLAF-GRMGGEEFGVILPVSGEPV 270 Query: 192 AAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 A L I S P++ +T SAG+A+ S ++ AD +Y AK+ Sbjct: 271 ACDYVLRLLDTIRRS-------PAVSALTCSAGLADIDANSTSSQVLKTADINMYQAKRE 323 Query: 251 GRNR 254 G++R Sbjct: 324 GKDR 327 >gi|317404890|gb|EFV85259.1| hypothetical protein HMPREF0005_04368 [Achromobacter xylosoxidans C54] Length = 323 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDK 153 +++L+++D L+G + + + + + E + + + D+DYFKQ+ND +GH GD Sbjct: 157 LARLAKVDGLTGCWSRAEILQRMKAMLEAAKRGARHTALMLDLDYFKQVNDRYGHLGGDA 216 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + DQL VGRLGGEEF + + A + + LR + NI G Sbjct: 217 ALRHFCDQLRACLREGDSVGRLGGEEFVVLLADADKDVALAVCDRLRLSLRQHPANI-DG 275 Query: 214 PSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253 ++ ++ S G+ + +S ++ RAD ALY AK++GR+ Sbjct: 276 QALVLSASGGVTGFLETDASMSDVLRRADLALYQAKRAGRD 316 >gi|315282940|ref|ZP_07871234.1| ggdef domain-containing protein [Listeria marthii FSL S4-120] gi|313613412|gb|EFR87262.1| ggdef domain-containing protein [Listeria marthii FSL S4-120] Length = 375 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 15/188 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131 +LL+ Y I K + N +++ + D L+ L N F + LS+ Sbjct: 184 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFAWIFAKSQKRKKALSL 242 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190 DID+FK+IND GH G+ V+A S L F R+GGEEFA + Sbjct: 243 XXXDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 302 Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247 +AA++A+ R+ IE ++ N +SG +T+S G+A K + ++ ADQALY A Sbjct: 303 QAALIADFFREEIERAKFPYNPASG---KVTVSIGVASASSKFATTESLFEAADQALYQA 359 Query: 248 KKSGRNRV 255 K++GRN++ Sbjct: 360 KQNGRNQI 367 >gi|315268460|gb|ADT95313.1| diguanylate cyclase [Shewanella baltica OS678] Length = 584 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 18/196 (9%) Query: 74 ISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS-------Y 125 + +T +L L + S+ E SY ++ ++ D L+G N L + Sbjct: 382 MPVTDNLELQQMVNSL--ETLKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDH 439 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184 N L I+ FDID FKQ ND +GH GD+ + + + + P + R GGEEF Sbjct: 440 NMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVL 499 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEP----ISTIIYR 239 S +E A LR+ I + +I P I TISAGI C + P +++I R Sbjct: 500 PSSHLEEVYQFAERLREKIISLEIPHEDSPHAGILTISAGIT--CWQLPQQLDANSLINR 557 Query: 240 ADQALYVAKKSGRNRV 255 AD+ALY AK +GRNR Sbjct: 558 ADEALYHAKLTGRNRT 573 >gi|229917756|ref|YP_002886402.1| diguanylate cyclase [Exiguobacterium sp. AT1b] gi|229469185|gb|ACQ70957.1| diguanylate cyclase [Exiguobacterium sp. AT1b] Length = 559 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 13/174 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +R+ SR D L+ L N AF IS + Y +S+ DID+FK+IND +GH V Sbjct: 387 DRLYTESRTDSLTLLANARAFYEYGIQQISDISMY--PISVAMLDIDFFKKINDTYGHQV 444 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++ V F R GGEEF +A +A +R+ IE + Sbjct: 445 GDQVLQEFGRRIRQVLRADDFAARYGGEEFILLLNHCDMSQAVDIAERIRQQIEAKPFLV 504 Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKK-SGRNRVVCFSDI 261 I +T S G+ + + + I AD+ALYV K +GRNRV F+++ Sbjct: 505 DHH-EISVTASIGVDTIDAFGNKRLDDTIRNADRALYVGGKYAGRNRVAHFNNL 557 >gi|146311599|ref|YP_001176673.1| diguanylate cyclase [Enterobacter sp. 638] gi|145318475|gb|ABP60622.1| diguanylate cyclase [Enterobacter sp. 638] Length = 368 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+ L+ D L+ N A + + S + S++ D+DYFK ND +GH GD+ + Sbjct: 205 RLDALAHQDALTETANRRAMEGVLENAVSQQKSFSLIMLDVDYFKLYNDTYGHQAGDECL 264 Query: 156 AFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSS----EQEAAILANDLRKI-IENSQIN 209 A ++ L TP V R GGEEF S EQ AA + + LR I +S Sbjct: 265 ARVAKALKQSVRTPDDVVSRYGGEEFVVILFDCSTEMAEQVAARIQDTLRAFAIAHSASK 324 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +S +T+S GIA +S +I +AD ALY AK++GR+R Sbjct: 325 VSDC----VTVSLGIAGMTPGLSVSQLIAQADAALYRAKEAGRDR 365 >gi|114570741|ref|YP_757421.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Maricaulis maris MCS10] gi|114341203|gb|ABI66483.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Maricaulis maris MCS10] Length = 809 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 13/170 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI+ L+ D L+GL N F +SS + +++++FFD+D FK++ND GH G Sbjct: 361 RITHLAHHDTLTGLPNRLKFREALEAELSSAWDNDSQVALMFFDLDRFKEVNDVHGHATG 420 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ +S++L+ RL G+EFA +E + N R+++ N +S Sbjct: 421 DRLLVAVSERLLDALPRNAVAARLSGDEFAVILPDVDSREDGL--NTARRVVNNVGSPLS 478 Query: 212 SGPSIHITISA--GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G S+H+ +SA G+ E ++ +AD ALY AK GRN+V F Sbjct: 479 IG-SLHLKVSASGGVTMFPLDGEDPDRLMNQADLALYRAKGQGRNQVCDF 527 >gi|77465369|ref|YP_354872.1| periplasmic sensor diguanylate cyclase [Rhodobacter sphaeroides 2.4.1] gi|77389787|gb|ABA80971.1| periplasmic sensor diguanylate cyclase [Rhodobacter sphaeroides 2.4.1] Length = 439 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 12/190 (6%) Query: 74 ISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 +++T+ L ++ + + + + R+ + R D L+ LLN F +L Sbjct: 241 VAVTVPPELAAVANAFNDMTRTIVEQEARLREFGRRDALTSLLNRREFDHALEQRAAPWT 300 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAA 183 E +++ DID FK+IND GH VGD V+ ++ +L G P+F R GGEEFA Sbjct: 301 GEPYALLLIDIDRFKRINDTHGHAVGDAVLRAVALRLAASARQGLPLF--RYGGEEFALL 358 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 + EA A DLR+ + + + G I +TIS GIA + + + AD+A Sbjct: 359 LDRAGAAEALSEAEDLRRAVAEEPVGLEDGTRIAVTISVGIALGARGQAGAELFAAADRA 418 Query: 244 LYVAKKSGRN 253 LY AK +GRN Sbjct: 419 LYAAKDAGRN 428 >gi|225851399|ref|YP_002731633.1| diguanylate cyclase with GAF sensor [Persephonella marina EX-H1] gi|225645783|gb|ACO03969.1| diguanylate cyclase with GAF sensor [Persephonella marina EX-H1] Length = 423 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 80/167 (47%), Gaps = 14/167 (8%) Query: 102 QLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + SR D L+ LLN + IS + SI D+D FK+IND +GH VGD Sbjct: 260 EKSRRDPLTDLLNRTVMDMIIARTIEISKISET--PFSIAMLDVDNFKRINDTYGHIVGD 317 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ + FV R GGEEF + + A + RK IE + I S Sbjct: 318 CVLKEIAKIIKKSLRKSDFVFRYGGEEFLVLLPSTDSKHAYRIMERTRKNIEKASIKCDS 377 Query: 213 GPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVC 257 I++TIS G+ E I II +ADQ LY AKK G+N V+ Sbjct: 378 H-KINVTISIGLITVYPDETLNIKQIIQKADQNLYTAKKKGKNLVIA 423 >gi|156974665|ref|YP_001445572.1| response regulator [Vibrio harveyi ATCC BAA-1116] gi|156526259|gb|ABU71345.1| hypothetical protein VIBHAR_02383 [Vibrio harveyi ATCC BAA-1116] Length = 655 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 11/162 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 SR+D L+G LN S I + + + + +V D+D+FK IND GHP GD V+ Sbjct: 477 SRLDRLTGSLNRSTIIEKIRAQTVSAPEDMRYVLVLIDLDHFKLINDQHGHPTGDLVLKH 536 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + + ++GRLGGEEF E + L K I QI G S+ Sbjct: 537 VCKAIQAKLNKGEYIGRLGGEEFILLLKNVDEIDVPFRIQSLHKTISEGQIKSEQGDSLS 596 Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256 +T A +A +P+S +Y DQALY +K++G N V+ Sbjct: 597 VT--ASLAYLSTSKPLSNFDELYSILDQALYQSKRNGHNAVI 636 >gi|154705984|ref|YP_001425443.1| sensory box/GGDEF family protein [Coxiella burnetii Dugway 5J108-111] gi|154355270|gb|ABS76732.1| sensory box/GGDEF family protein [Coxiella burnetii Dugway 5J108-111] Length = 577 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 13/180 (7%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137 + SI L + RI+ L+ D L+ L N FI L S + KLS++F D+D Sbjct: 128 LQQSIFHTLLKNEARIAYLASRDQLTSLPNRREFIHRLNEEIGKPKSVDSKLSLLFLDLD 187 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALG-SSEQEAAI 194 FK IND GH +GD+V+ +SD+L + +P+ F+G LGG+EF +++A + Sbjct: 188 NFKDINDALGHHMGDRVLVHVSDRLRKLDLSPLNYFLGHLGGDEFVILLKDLQQDKDATL 247 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 A + S I + +++ S GI + K T++ +AD A+Y AKK GRN Sbjct: 248 CAKKISNAFSES-FKIKNF-LLYVNFSIGITIDFYSKTDSETLLKKADMAMYQAKKKGRN 305 >gi|28870951|ref|NP_793570.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28854200|gb|AAO57265.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 355 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 28/244 (11%) Query: 24 PHTFMIYF-SIFFSIFIATVIFIANIFLFYIGLTPFYGLE-----YILVENLSLVIISIT 77 P MI S ++ +F++ L +I L+P G++ Y+ + + + SI Sbjct: 99 PIALMIILCSTLLVVYTRDYLFVS--VLSWIILSPAQGIDTDSAAYVFM--MLFFVSSIA 154 Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------I 131 + ++L + L+++ +R +LS D L+ +LN A + +L +E+L+ Sbjct: 155 LGVVLNHTYTRTLRKVLTLESRFRELSLTDDLTDILNRRALMLAL---DEQLANNSGGYF 211 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID FK IND FGH GD+V+ ++ L G+ F GR+GGEEF S E Sbjct: 212 LMLDIDNFKTINDQFGHDAGDEVLRLMASCLQQTPGSLAF-GRMGGEEFGVILPVSGEPV 270 Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 A L I S P++ +T SAG+A+ S ++ AD +Y AK+ Sbjct: 271 ACDYVLRLLDTIRRS-------PAVSSLTCSAGLADIDANSTSSQVLKTADINMYQAKRE 323 Query: 251 GRNR 254 G++R Sbjct: 324 GKDR 327 >gi|293400063|ref|ZP_06644209.1| response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306463|gb|EFE47706.1| response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 699 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 13/201 (6%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYN--RISQLSRIDCLSGLLNHSAF----ISS 121 NL IS+ + + L ++ K+ I N ++ Q + +D +G+L +AF I Sbjct: 324 NLENRKISMKVKMDL---ENTLYKQRKIIENNQKLMQYTELDDFTGVLKKTAFRKQTIEK 380 Query: 122 LGSYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 L N+ F DID FK IND++GH +GD+VI + + +GR+GG+E Sbjct: 381 LQRRNKDQKAFFLMMDIDNFKHINDSYGHMIGDRVIKEIVAIIKNNVDQNTLIGRVGGDE 440 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 FA A E + N + KI + Q I+IS GI E + I + Sbjct: 441 FAIYA--DHVYELYKIENCVEKIKNDVQDIKIRNVKKRISISIGICEASDDDSYDVIYKK 498 Query: 240 ADQALYVAKKSGRNRVVCFSD 260 AD ALY AK SGRN+ V + + Sbjct: 499 ADHALYEAKLSGRNQYVVYEE 519 >gi|289670142|ref|ZP_06491217.1| hypothetical protein XcampmN_17019 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 324 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 15/194 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119 + +S +++++ ++L +GY +++ + + +L+ +D L+GL N I Sbjct: 133 QGVSTIVVTL-VTLAVGYAFSLRMQDDRVH---LEELASLDALTGLPNRRMLERALTHQI 188 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ S++ D+D+FK++ND +GH GD ++ L+ L P V R GGEE Sbjct: 189 DQRQPHDRLNSLIILDLDHFKEVNDLYGHAAGDAALSDLATILRFEVREPHQVFRFGGEE 248 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F S E LRK+I GP IT+S G A + R Sbjct: 249 FVVLLRAGSLAELEAATERLRKVIRTGL----RGPGGRITVSLGAARHDGETHWQDWFSR 304 Query: 240 ADQALYVAKKSGRN 253 AD ALY+AK SGR+ Sbjct: 305 ADAALYLAKNSGRD 318 >gi|225872326|ref|YP_002753781.1| sensory box/GGDEF family protein [Acidobacterium capsulatum ATCC 51196] gi|225792079|gb|ACO32169.1| sensory box/GGDEF family protein [Acidobacterium capsulatum ATCC 51196] Length = 508 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 12/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIN 143 ++L + + LS D L+G++N A +L S E LS + D+D+FKQ N Sbjct: 312 RDLEGARAELEHLSYTDGLTGVVNRRALEKALCSEWEHCIRSGSPLSFILIDVDFFKQAN 371 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D GH GD+ + +++ L + +GR GG+EFAA + A I+A + Sbjct: 372 DRHGHQAGDEYLIAIAEALRASLHRSIDIIGRYGGDEFAAILPSTDAGAAEIVAERMCHG 431 Query: 203 IENSQINISSGPSIHITISAGIAERC--HKEPI-STIIYRADQALYVAKKSGRN 253 + +I S+ + TIS GIA C EP + +++ AD ALY AK+SGRN Sbjct: 432 VRQLRIENSATTTGFATISMGIAT-CLTFMEPTPALLLHTADAALYDAKRSGRN 484 >gi|86748936|ref|YP_485432.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] gi|86571964|gb|ABD06521.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] Length = 777 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 15/171 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLS-IVFFDIDYFKQINDNFGHP 149 RI L+R D L+ L N F + G +LS ++F D+D FKQ+ND GHP Sbjct: 331 RIVHLARYDELTTLPNRVQFRDEIERILSLEHGHGKTRLSALLFIDLDQFKQVNDTLGHP 390 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQ 207 +GD+++ ++D+L + FV R GG+EF S+++AA+LA R+I+E S Sbjct: 391 LGDRLLCAVADRLRDMLRPEDFVARFGGDEFVVFQQNVRSDEDAAVLA---RRIVERLSD 447 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + I S GIA ++ AD ALY AK GR CF Sbjct: 448 RYLIEHHVVEIGASIGIAMTSPGIRADILLKNADMALYRAKADGRG-TFCF 497 >gi|56478925|ref|YP_160514.1| sensor histidine kinase [Aromatoleum aromaticum EbN1] gi|56314968|emb|CAI09613.1| Sensory protein with histidine kinase domain [Aromatoleum aromaticum EbN1] Length = 646 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 16/202 (7%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYN-----RISQLSRIDCLSGLLNHSAFISSL- 122 L+ ++ ++ G + G+I+ L I+ RI+ L+ D L+G+ N F L Sbjct: 446 LTALVSDAPLTYTEGGLRGAIVVLLDITERKDVERRIAHLATHDVLTGIPNRLMFSQQLT 505 Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 Y + ++F D+D+FK++ND FGH GD+++ ++ + +GR G Sbjct: 506 HAVDQAKRYGHRFGLLFVDLDHFKRVNDEFGHHAGDQLLREAVSRMQHAVRSSDMLGRRG 565 Query: 177 GEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPIS 234 G+EF S +A ++A +R +E Q + G I+ S GIA H Sbjct: 566 GDEFVVLLPEIESGHDAEVVAEKIRLALE--QPFVLDGKEARISSSIGIALYPDHGADEG 623 Query: 235 TIIYRADQALYVAKKSGRNRVV 256 ++ RAD+A+Y AK GRNRV Sbjct: 624 ALMRRADEAMYRAKSEGRNRVA 645 >gi|118581892|ref|YP_903142.1| diguanylate cyclase [Pelobacter propionicus DSM 2379] gi|118504602|gb|ABL01085.1| diguanylate cyclase [Pelobacter propionicus DSM 2379] Length = 474 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 13/168 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S +I ++ D L+ L N + F I++ KL+++F D+D+FK IND GH Sbjct: 293 SEQQIRHMAYFDPLTDLPNRTLFFDRLNQAIAAANREQAKLAVLFLDLDHFKSINDTQGH 352 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQ 207 +GD+V+ +S +L + + R+GG+EF G E +A+ +A RK+I++ Sbjct: 353 DIGDQVLIEVSRRLHRQIRSCDTLARMGGDEFVLVITGIGETLDASCVA---RKLIDSIH 409 Query: 208 INIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 +S G +HI++S GIA T+I AD A+Y AKKSGRN Sbjct: 410 SPLSIRGNELHISMSMGIALFADSGADAETLIKNADLAMYHAKKSGRN 457 >gi|322508370|gb|ADX03824.1| GGDEF domain-containing protein [Acinetobacter baumannii 1656-2] Length = 401 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 11/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL ++S LS+ D L+GL N +L + + L+I+ DID+FK ND Sbjct: 214 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDFFKPYND 273 Query: 145 NFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 + GH GD+ + ++ + + + V R GGEEF ++ Q+A I A L I Sbjct: 274 SLGHLKGDQCLKDIATAISSIAARSGDLVARYGGEEFLLLFPMTNAQQAKIQAERLMNAI 333 Query: 204 EN-SQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254 + + ++ S S ++TIS G+A + + IS + RAD ALY AK +GRN+ Sbjct: 334 KKIAIVHPCSSVSPYVTISVGVATTIPRLNDSISAFVSRADHALYQAKTNGRNQ 387 >gi|315127260|ref|YP_004069263.1| GGDEF family protein [Pseudoalteromonas sp. SM9913] gi|315015774|gb|ADT69112.1| hypothetical GGDEF family protein [Pseudoalteromonas sp. SM9913] Length = 348 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 91/195 (46%), Gaps = 28/195 (14%) Query: 92 ELFISYNRISQLSRI----------DCLSGLLNHSAFISSL-------GSYNE--KLSI- 131 +L +YN I L D L+GL N F + + S NE KL++ Sbjct: 157 KLAQAYNEIKDLKEALSVTQEAVDKDSLTGLFNRGKFDTDIVEFCLNASSQNEHGKLAVL 216 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + FDID+FK+ ND+FGH GD+V+ ++ ++ R GGEEF S + Sbjct: 217 IMFDIDHFKRFNDDFGHQKGDEVLKLVAQKVQNSVQEQYRAYRFGGEEFCITGYFESIND 276 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISA--GIAERCHKEPIST---IIYRADQALYV 246 A N LR I I + ISA GIA EP S ++ +AD+ALY+ Sbjct: 277 AMAFCNQLRLSIAKLTIRKKEDSNNKRNISASFGIA---LMEPFSKSCLLVEKADRALYL 333 Query: 247 AKKSGRNRVVCFSDI 261 AK GRNRV +D+ Sbjct: 334 AKTHGRNRVEIAADM 348 >gi|310826216|ref|YP_003958573.1| sensory box sensor/GGDEF/EAL domain protein [Eubacterium limosum KIST612] gi|308737950|gb|ADO35610.1| sensory box sensor/GGDEF/EAL domain protein [Eubacterium limosum KIST612] Length = 676 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 16/169 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKV 154 + +LS+ D L+GL N + + LG + +++ DID+FK++ND +GH GD V Sbjct: 515 LRRLSQTDPLTGLYNRATLVKRLGRVLRRGTAASHALIILDIDHFKELNDTYGHQFGDTV 574 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA---NDLRKIIENSQINIS 211 + ++ L + F GRLGG+EF G S + AI+ N LR + N ++++ Sbjct: 575 LIEVAAALKDCLRSNDFSGRLGGDEFMIFMRGLS--DTAIIRERLNVLRDRLYN--LDLT 630 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + P +TIS GIA H + + RAD ALY AK+ GR+++V + Sbjct: 631 NTP---LTISIGIAFFPAHGKSFQELYDRADTALYEAKRQGRDQIVFYE 676 >gi|291613522|ref|YP_003523679.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus ES-1] gi|291583634|gb|ADE11292.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus ES-1] Length = 727 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F I +N + SI+ D+D FK IND +GHP GD + +S Sbjct: 310 DPLTGLHNRRHFNEMLEYEIDRSERHNHEFSILMLDLDDFKDINDTYGHPCGDATLCAVS 369 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + R+GG+EFA +S++ A +A LR + + + +G + H T Sbjct: 370 EIVRSTMRKGDLTTRIGGDEFAIILTETSQEGAREVAEKLRVALRDHKFEAPNGKTFHTT 429 Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 S G IA + IS ++ D LY AK G++ V ++E+ Sbjct: 430 TSIGLIAYPKDAQNISDLMAGVDIGLYRAKSIGKDSVCSVEEVEDK 475 >gi|288939917|ref|YP_003442157.1| PAS/PAC sensor-containing diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288895289|gb|ADC61125.1| diguanylate cyclase with PAS/PAC sensor [Allochromatium vinosum DSM 180] Length = 434 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 10/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QL+R+D L+ L N F + Y+ +++ DID+FK +ND +GH VGD Sbjct: 257 LRQLTRLDPLTQLFNRRYFFTLAEQEYQRFLRYHHPMALCMIDIDHFKSVNDRYGHLVGD 316 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L + R GGEEF + Q A LR + +I S Sbjct: 317 TVLCIVAQTLHDNLRQVDILARYGGEEFVILLPETDLQTACASTERLRVAVAERRIETPS 376 Query: 213 GPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 GP + +T+S G+ ++ ++ ADQ LY AK++GRNRV Sbjct: 377 GP-VSVTLSLGVVAIADGPAMTLERLLDAADQMLYRAKQAGRNRV 420 >gi|187927646|ref|YP_001898133.1| diguanylate cyclase [Ralstonia pickettii 12J] gi|187724536|gb|ACD25701.1| diguanylate cyclase [Ralstonia pickettii 12J] Length = 499 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 17/205 (8%) Query: 67 ENLSLVIISITISLLLGYISGS-----ILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118 + LS ++ ++S+ L + +G L+ ++ N + +L++ D L+GL N A Sbjct: 290 QRLSWIVGLSSLSVSLAFCAGVWLLAFALRGRVMAENHLRELTQTDPLTGLKNRRALDVA 349 Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FV 172 L + +LS++F D D+FK+ ND GH GD + +L+ Q + Sbjct: 350 LENEWDRLQRNDSRLSVLFIDADHFKRYNDAHGHAQGDVALQYLA-QCISKHARRRGDLA 408 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHK 230 R GGEEF + E A +A +R +E + ++ T+S G A R Sbjct: 409 ARYGGEEFVVLLPDTDEAGATRIAEAIRAEVEGAGASVGDAGLAPFTVSVGCATARRASF 468 Query: 231 EPISTIIYRADQALYVAKKSGRNRV 255 ++ + AD ALY AK+ GRNR+ Sbjct: 469 PSLNALTKAADDALYEAKRKGRNRI 493 >gi|16803951|ref|NP_465436.1| hypothetical protein lmo1912 [Listeria monocytogenes EGD-e] gi|224501289|ref|ZP_03669596.1| hypothetical protein LmonFR_01990 [Listeria monocytogenes FSL R2-561] gi|254827203|ref|ZP_05231890.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165] gi|254831487|ref|ZP_05236142.1| hypothetical protein Lmon1_09038 [Listeria monocytogenes 10403S] gi|255026924|ref|ZP_05298910.1| hypothetical protein LmonocytFSL_12411 [Listeria monocytogenes FSL J2-003] gi|284802357|ref|YP_003414222.1| hypothetical protein LM5578_2113 [Listeria monocytogenes 08-5578] gi|284995499|ref|YP_003417267.1| hypothetical protein LM5923_2064 [Listeria monocytogenes 08-5923] gi|16411365|emb|CAC99990.1| lmo1912 [Listeria monocytogenes EGD-e] gi|258599586|gb|EEW12911.1| GGDEF domain-containing protein [Listeria monocytogenes FSL N3-165] gi|284057919|gb|ADB68860.1| hypothetical protein LM5578_2113 [Listeria monocytogenes 08-5578] gi|284060966|gb|ADB71905.1| hypothetical protein LM5923_2064 [Listeria monocytogenes 08-5923] Length = 375 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131 +LL+ Y I K + N +++ + D L+ L N F G + LS+ Sbjct: 184 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFTKSQKRKKSLSL 242 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190 DID+FK+IND GH G+ V+A S L F R+GGEEFA + Sbjct: 243 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 302 Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247 +AA++A+ R+ +E ++ N +SG +T+S G+A + ++ ADQALY A Sbjct: 303 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 359 Query: 248 KKSGRNRVVC 257 K++GRN++ Sbjct: 360 KQNGRNQIAV 369 >gi|254255450|ref|ZP_04948766.1| hypothetical protein BDAG_04793 [Burkholderia dolosa AUO158] gi|124901187|gb|EAY71937.1| hypothetical protein BDAG_04793 [Burkholderia dolosa AUO158] Length = 514 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 11/167 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151 ++ L+R D L+GL N A + L +L S++F D D FKQ ND +GH G Sbjct: 328 LTDLTRTDPLTGLHNRRALDAVLADEWARLRRGSSGSLSVLFIDADRFKQYNDRYGHAQG 387 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 D + F+++ + R GGEEF A + + AA +A +R+ + +++ Sbjct: 388 DTALRFVAECIRAHTRRRGDVAARYGGEEFVAVLPDTDARGAAKVAEAIRREVARNRLAG 447 Query: 210 -ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + P ++I + + + +AD+ALY+AK GRNRV Sbjct: 448 FPDAVPPFTVSIGCATGDAARPSSVDALTRQADRALYMAKHRGRNRV 494 >gi|325272237|ref|ZP_08138656.1| diguanylate cyclase [Pseudomonas sp. TJI-51] gi|324102626|gb|EGC00054.1| diguanylate cyclase [Pseudomonas sp. TJI-51] Length = 387 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 13/200 (6%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 L +++S+ I ++T+ + Y G +L S +R+ L+ D L+G LN A + S Sbjct: 183 LKQSISVAIGTVTVMM---YSIGLVLMAKERSESRLQHLALHDVLTGTLNRRAILERFAS 239 Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 ++ L++ DID+FK+IND +GH GD+V+ QL +GR GG Sbjct: 240 ELDRARGQQASLAVAMIDIDHFKRINDLYGHLAGDEVLCHCVRQLQQRLRQGDSLGRYGG 299 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIST 235 EEF + A LR+ I S +G I + S G+ K+ ++ Sbjct: 300 EEFLLLLPATDRAGALTAVQGLREAIARSPARF-AGDHIELRFSVGLWCGVPGSKDSTAS 358 Query: 236 IIYRADQALYVAKKSGRNRV 255 ++ +AD ALY AK +GR+ V Sbjct: 359 LLAQADAALYQAKAAGRDTV 378 >gi|254491734|ref|ZP_05104913.1| GGDEF domain protein [Methylophaga thiooxidans DMS010] gi|224463212|gb|EEF79482.1| GGDEF domain protein [Methylophaga thiooxydans DMS010] Length = 358 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 10/164 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F +S ++ LS +F D+D+FK++NDN+GH GD V+ +S Sbjct: 192 DPLTGINNRRFFDQRLQEEVSRAKRFHTPLSCLFIDLDHFKRVNDNYGHQAGDAVLKQVS 251 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L + R GGEEF + ++AA + +R+ ++ ++ I SG +IH+T Sbjct: 252 ELLNDRLRNTDVLARYGGEEFVILLSHTHSKDAAEIGEQIRERVDAAEFTIPSGKTIHVT 311 Query: 220 ISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVVCFSD 260 +S G+A + I + ++ ADQA+Y AK SGRN+++ D Sbjct: 312 LSIGLATMTKEGNIHDENALVAAADQAVYAAKLSGRNKLMQTPD 355 >gi|254457966|ref|ZP_05071393.1| response regulator PleD [Campylobacterales bacterium GD 1] gi|207085359|gb|EDZ62644.1| response regulator PleD [Campylobacterales bacterium GD 1] Length = 423 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 93/185 (50%), Gaps = 13/185 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFD 135 +T++ + + + S E SY+ ++ + L+ L + I + N + V D Sbjct: 246 VTLTNITSFDAESKYNEHEASYDSLTNIYNRTKLNNLF--TIQIETAKVNNNTFAFVMLD 303 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 IDYFK +NDN+GH +GD V+ ++D + R GGEEF ++A + Sbjct: 304 IDYFKAVNDNYGHLIGDAVLIQMTDLIKKHIRDSDIFARWGGEEFVLLLPHVGLKKAEEI 363 Query: 196 ANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK--EPISTIIYRADQALYVAKKSGR 252 AN LR IE + P I IT S G+ C+K + I +II RAD ALY AK +GR Sbjct: 364 ANYLRTKIEADKF-----PEIDSITCSFGVT--CYKDGDNIDSIIKRADSALYDAKDAGR 416 Query: 253 NRVVC 257 N +VC Sbjct: 417 N-IVC 420 >gi|190891799|ref|YP_001978341.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190697078|gb|ACE91163.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 753 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDN 145 +L + R+ LS D L+GL N F+ + S ++L ++ D+D FK+IND Sbjct: 310 KLVRARQRLEHLSLHDALTGLPNRR-FVDQMISQPPRPDPQDRLILIHIDLDRFKEINDT 368 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIE 204 GH GD V+ + +L + G R+GG+EF A+ + E +AA LA R+I++ Sbjct: 369 KGHAGGDMVLQTTASRLADLTGPNDVAARIGGDEFVVASWSTDPEPKAAELA---RQIVD 425 Query: 205 NSQINI-SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 Q I G + S G+A E + ++ AD ALY AKK+GR R F++ Sbjct: 426 ALQQTIFIDGAGYVVGASVGVAWETESARDRDLGQLLLNADLALYQAKKAGRGRAAVFTE 485 >gi|242313544|ref|ZP_04812561.1| diguanylate cyclase [Burkholderia pseudomallei 1106b] gi|242136783|gb|EES23186.1| diguanylate cyclase [Burkholderia pseudomallei 1106b] Length = 441 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N L++V D+D+FKQ N Sbjct: 254 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTLLALVMVDVDHFKQYN 313 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V G FV R GGEEFA G+ E+ AA +A R+ Sbjct: 314 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 373 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E +I AD ALY AK GRN Sbjct: 374 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 425 >gi|320323580|gb|EFW79664.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320328212|gb|EFW84216.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330881948|gb|EGH16097.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 527 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 15/172 (8%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A ++ + I + QI + P + Sbjct: 396 RVVEQCIRRPGDVAARYGGEEIAVVLPGTDESSARQVAENILQAIRDEQIEHPASPFGIV 455 Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A +R + ++I AD+ALY AK GRNRV S+I +T Sbjct: 456 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 505 >gi|298487368|ref|ZP_07005416.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158171|gb|EFH99243.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 527 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 15/172 (8%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A ++ + I + QI + P + Sbjct: 396 RVVEQCIRRPGDVAARYGGEEIAVVLPGTDESSARQVAENILQAIRDEQIEHPASPFGIV 455 Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A +R + ++I AD+ALY AK GRNRV S+I +T Sbjct: 456 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 505 >gi|209521738|ref|ZP_03270424.1| diguanylate cyclase [Burkholderia sp. H160] gi|209497831|gb|EDZ98000.1| diguanylate cyclase [Burkholderia sp. H160] Length = 613 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 90/182 (49%), Gaps = 13/182 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 + L + + L+ D L+GL N F+ L S E L+++F D+D FKQI Sbjct: 396 MDALHSKQSELVHLASHDVLTGLPNRMLFMQKLESAIEEAKFRGEGLAVLFVDLDRFKQI 455 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLR 200 ND FGH VGDKV+ ++ +L V V RLGG+EF G ++E AI A + Sbjct: 456 NDQFGHSVGDKVLVAVARRLKDVLYPGDVVARLGGDEFIVLIEGPRAAEVTPAIAAVIME 515 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259 + E I+ G S+ + S GI+E H ++ AD A+Y AK GR + + Sbjct: 516 ALNETLTID---GNSMTVGASIGISEFPHDSGNAEELLLNADAAMYAAKSGGRCAYLRYR 572 Query: 260 DI 261 D+ Sbjct: 573 DL 574 >gi|59714159|ref|YP_206934.1| GGDEF domain-containing protein [Vibrio fischeri ES114] gi|59482407|gb|AAW88046.1| GGDEF domain protein [Vibrio fischeri ES114] Length = 530 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 13/215 (6%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P + +E I + LV I +S ++ + + + I +N I +L+ D L+GL+N Sbjct: 319 PKWSIERISSSEIILVGCFILLSFIVSLVITQLQLKKKIDHNEIKKLAHHDSLTGLINRG 378 Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F + KL++++ D+D FK +NDNFGH GD + ++ L F Sbjct: 379 YFKKLFHWKMQKARKNETKLALIYIDLDGFKDLNDNFGHSAGDLALKAVARNLYSTFSEN 438 Query: 170 MFVGRLGGEEFAAAALGSSEQEA--AILANDLRKIIENSQINISSGPSIHITISAGIA-E 226 +V RLGG+EFA ++E A++ L N+ + + P ++ S G+A Sbjct: 439 SYVARLGGDEFAVLIHTVIDEEEIFALVEEFLES--SNTPLMLEDIP-YQLSTSIGLAFF 495 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 H I+ +++ AD A+Y K+SG+N F + Sbjct: 496 PEHGRSINELMHNADAAMYDIKRSGKNGFKVFEKL 530 >gi|115524947|ref|YP_781858.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] gi|115518894|gb|ABJ06878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] Length = 802 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 9/162 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGD 152 RI+ L+R D L+ L N + F I + Y + ++++ D+D+FK+IND+ GHP+GD Sbjct: 370 RIAHLARHDALTDLPNRTTFREEIDRVLRYTRREVGAAVLYIDLDHFKEINDSLGHPIGD 429 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE--AAILANDLRKIIENSQINI 210 +++ ++ +L V RLGG+EFA + E E AA LA + II Sbjct: 430 ELLIEVARRLADCIRDGDLVARLGGDEFAVIQISHHEPESDAAALAMRIVSIISTPYELQ 489 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 SI ++ +A EP +I +AD ALY AK GR Sbjct: 490 GHHVSIGASVGIALAPTDASEP-DELIKKADLALYRAKAEGR 530 >gi|310639898|ref|YP_003944656.1| membrane domain involved in signal transduction; diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2 [Paenibacillus polymyxa SC2] gi|309244848|gb|ADO54415.1| Putative membrane domain involved in signal transduction; Diguanylate cyclase/phosphodiesterase domain 1; Diguanylate cyclase/phosphodiesterase domain 2 [Paenibacillus polymyxa SC2] Length = 205 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 5/173 (2%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + N + +L+ D ++GL N +A + E +I++ D+D FK IND +GH +G Sbjct: 1 MMERNLLRKLAYQDPVTGLFNRNALELFWKRSNGKEGFAIMYLDLDGFKAINDTYGHQIG 60 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DK++ +SD L+ V + R+GG+EF + +LA L + I + NI Sbjct: 61 DKLLRRVSDHLLQVTNSHQKAFRIGGDEFLLIMKDYDADQVTVLAELLLQKI-SVPYNI- 118 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 G ++ +T S GI K+P+ +++ AD A+Y AK GRNR + I Sbjct: 119 QGINLQVTGSIGITMHPSPKKPLPSLLKEADIAMYQAKGMGRNRYAVYQRIRQ 171 >gi|296285048|ref|ZP_06863046.1| sensory box/GGDEF family protein [Citromicrobium bathyomarinum JL354] Length = 881 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 65/184 (35%), Positives = 85/184 (46%), Gaps = 11/184 (5%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138 SG+ L E S S+L+ D L+GL N A +L SI+ D+D Sbjct: 327 SGTDLTERRRSAEHASRLALYDSLTGLANRHALSQALSKLLTHRNPAQRVCSILMLDLDR 386 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILAN 197 FK +ND FGHP GD ++ ++ +L V G VGR+GG+EF E+ L N Sbjct: 387 FKHVNDTFGHPTGDALLNQVARRLEKVVGDLGTVGRIGGDEFQVLIPKRCEKARLEQLGN 446 Query: 198 DLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 D+ I SQ G I S GIA H ++ AD ALY AK +GR R Sbjct: 447 DI--IHSLSQPYSIDGNRAVIGASVGIAIAPEHGGTSERLVRSADLALYAAKDAGRGRYR 504 Query: 257 CFSD 260 FSD Sbjct: 505 VFSD 508 >gi|262368657|ref|ZP_06061986.1| WspR [Acinetobacter johnsonii SH046] gi|262316335|gb|EEY97373.1| WspR [Acinetobacter johnsonii SH046] Length = 420 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 11/175 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 LS+ D L+ + N F + +Y E+ LSI+F D+D+FK+ ND +GH GD V Sbjct: 245 HLSQNDELTKISNRRNFDEMMDTYYEQSRQDETPLSILFIDVDFFKKYNDFYGHQKGDDV 304 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSG 213 I+ ++ + FV R GGEEF + A +A+++ + IE +I + S Sbjct: 305 ISSIAKSIKNAIRHMDFVARYGGEEFVVLLPETDAHGAYAVASNIYRAIERLEIPHEMSE 364 Query: 214 PSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVVCFSDIENNTC 266 S +TIS GI + +S + + ADQALY AKK GRN++ + + +TC Sbjct: 365 VSPFVTISLGITVFKGEVDLSKVELLGIADQALYRAKKLGRNQIY-YQPLTTSTC 418 >gi|260773892|ref|ZP_05882807.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14] gi|260610853|gb|EEX36057.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14] Length = 466 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 18/167 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG---------SYNEKLSIVFFDIDYFKQINDNFGH 148 N++ + S D L+G+ N F + +E + DID+FK+IND FGH Sbjct: 299 NKLREQSEKDALTGIWNRRKFDQQIRLECHRVKRYPEHEHSCLAILDIDHFKRINDQFGH 358 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD VI +++ L F+ R+GGEEFA + +EA + +IE +I Sbjct: 359 SHGDYVIQSVAETLRDGLRESDFLARIGGEEFAIILPHTPIEEA-------QAVIERLRI 411 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + +++ISAGI++ E RAD+ALY +K +GRN+V Sbjct: 412 KVYQLHAQNVSISAGISDIMGSE--QETYQRADKALYESKATGRNQV 456 >gi|254563085|ref|YP_003070180.1| diguanylate cyclase [Methylobacterium extorquens DM4] gi|254270363|emb|CAX26359.1| putative diguanylate cyclase (GGDEF) [Methylobacterium extorquens DM4] Length = 390 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 18/176 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R ++++R D L+GL N ++++G+ + L + DID+FK+ ND GH G Sbjct: 216 ERNAEMARTDQLTGLFNRH-HLATIGADLIPKRDTQSLGALLIDIDHFKRFNDTQGHLAG 274 Query: 152 DKVIAFLSD----QLVVVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 D+ I +SD LV VG R GGEEF G +AA L +R+ +E Sbjct: 275 DRCIRTVSDLVREMLVPANENKPPVGTAVRFGGEEFLVLLPGMDAAQAAALGEAIRRRVE 334 Query: 205 NSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + GP+ +T+S G+A+ + H E + T++ AD ALY AK GRNRV Sbjct: 335 GVGIPHPGLGPNAVVTLSIGVADWKKGHTE-LDTLVNAADAALYQAKNLGRNRVAV 389 >gi|222640396|gb|EEE68528.1| hypothetical protein OsJ_26970 [Oryza sativa Japonica Group] Length = 1380 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 13/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152 +++ SR D L+GL N A ++L ++ + DID+FK IND GH GD Sbjct: 151 LAEQSRTDALTGLPNRRAMAAALEEAVAEIDGQPGLACVALLDIDHFKHINDFQGHATGD 210 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+A L L F R GGEEF A G+ A + LR + + + Sbjct: 211 RVLAELGVLLRSHFAGRGMAARYGGEEFVAVMPGTDLHTAELQCEFLRLAVADLPLGFP- 269 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +TIS G+A+ E + ++ RAD+ALY AK +GRNR + + Sbjct: 270 -----VTISIGVAQHQAGESVDDMLARADKALYRAKGNGRNRTLAIA 311 >gi|254522461|ref|ZP_05134516.1| diguanylate cyclase [Stenotrophomonas sp. SKA14] gi|219720052|gb|EED38577.1| diguanylate cyclase [Stenotrophomonas sp. SKA14] Length = 524 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 10/164 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +++ SR D L+GLLN +L + + +I+ DID FK IND GH VGD I Sbjct: 362 LNRASRTDPLTGLLNRRGLQQALDALQVQGIPFAILALDIDRFKSINDAHGHDVGDAAIV 421 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++DQ+ + R GGEEF G + + A LR+ I + P Sbjct: 422 HIADQMRRYSRDSDILCRAGGEEFLLLLPGINAEPARQAGERLRQHIADHPFE----PVG 477 Query: 217 HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 IT+S G+A H + + AD+ALY+AK+ GRNRVV + Sbjct: 478 TITVSLGVAHFPSFHVD-AEQALRLADKALYMAKEQGRNRVVVY 520 >gi|254515058|ref|ZP_05127119.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF sensor(s) [gamma proteobacterium NOR5-3] gi|219677301|gb|EED33666.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF sensor(s) [gamma proteobacterium NOR5-3] Length = 815 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 15/171 (8%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+GL N + I+ +L+++F DID FK IND+ GH G Sbjct: 388 QLEQLAHFDSLTGLPNRALARDRLAQGIAQSKRQGSRLAVLFLDIDNFKVINDSLGHHAG 447 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ +S +L + + RLGG+EF A L +E A+ A + K++ ++ Sbjct: 448 DELLLAMSGRLRNILRGGDTLSRLGGDEFLAVLLDVKSREDAVFAAN--KLLATTKERFE 505 Query: 212 S-GPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCF 258 + G S+H ++S G+A + E I +I AD A+Y AK +GR RV + Sbjct: 506 ALGNSVHSSLSIGLA--LYPEDGLSIDELIQHADTAMYQAKSAGRGRVATY 554 >gi|218531980|ref|YP_002422796.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] gi|218524283|gb|ACK84868.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] Length = 390 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 18/176 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R ++++R D L+GL N ++++G+ + L + DID+FK+ ND GH G Sbjct: 216 ERNAEMARTDQLTGLFNRH-HLATIGADLIPKRDTQSLGALLIDIDHFKRFNDTQGHLAG 274 Query: 152 DKVIAFLSD----QLVVVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 D+ I +SD LV VG R GGEEF G AA L +R+ +E Sbjct: 275 DRCIRTVSDLVREMLVPANENKPPVGTAVRFGGEEFLVLLPGMDAARAAALGEAIRRRVE 334 Query: 205 NSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + GP+ +T+S G+A+ + H E + T++ AD ALY AK GRNRV Sbjct: 335 GVGIPHPGLGPNAVVTLSIGVADWKKGHTE-LDTLVNAADAALYQAKNLGRNRVAV 389 >gi|217077028|ref|YP_002334744.1| diguanylate cyclase [Thermosipho africanus TCF52B] gi|217036881|gb|ACJ75403.1| diguanylate cyclase [Thermosipho africanus TCF52B] Length = 167 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ LS D L+ L N + Y S++ DID FK+IND +GH V Sbjct: 5 KKLKYLSERDQLTDLYNRHKMNEEIRKHYYNFKRYGRPFSLLMVDIDKFKKINDTYGHMV 64 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ L+ LV R GEEF + ++A +A +RK IE Sbjct: 65 GDEVLKKLAKILVKNIRKTDIASRWVGEEFLILLSETDLEQAIEVAEKIRKTIEKE---- 120 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S I IT+S G+ + E I ++ D+ LY AK+SGRNRV Sbjct: 121 SFPKDIRITVSIGVDSVENHEHIKDLLILVDEKLYKAKESGRNRV 165 >gi|167826624|ref|ZP_02458095.1| diguanylate cyclase [Burkholderia pseudomallei 9] Length = 441 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N L++V D+D+FKQ N Sbjct: 254 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTLLTLVMVDVDHFKQYN 313 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V G FV R GGEEFA G+ E+ AA +A R+ Sbjct: 314 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 373 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E +I AD ALY AK GRN Sbjct: 374 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 425 >gi|165918173|ref|ZP_02218259.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate phosphodiesterase (EAL) domain protein [Coxiella burnetii RSA 334] gi|165918033|gb|EDR36637.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate phosphodiesterase (EAL) domain protein [Coxiella burnetii RSA 334] Length = 577 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 13/180 (7%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137 + SI L + RI+ L+ D L+ L N FI L S + KLS++F D+D Sbjct: 128 LQQSIFHTLLKNEARIAYLASRDQLTSLPNRREFIHRLNEEIGKPKSVDSKLSLLFLDLD 187 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALG-SSEQEAAI 194 FK IND GH +GD+V+ +SD+L + +P+ F+G LGG+EF +++A + Sbjct: 188 NFKDINDALGHHMGDRVLVHVSDRLRKLDLSPLNYFLGHLGGDEFVILLKDLQQDKDATL 247 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 A + S I + +++ S GI + K T++ +AD A+Y AKK GRN Sbjct: 248 CAKKISNAFSES-FKIKNF-LLYVNFSIGITIDFYSKTDSETLLKKADMAMYQAKKKGRN 305 >gi|126641740|ref|YP_001084724.1| putative two-component response regulator [Acinetobacter baumannii ATCC 17978] gi|169796029|ref|YP_001713822.1| hypothetical protein ABAYE1952 [Acinetobacter baumannii AYE] gi|184158051|ref|YP_001846390.1| GGDEF domain-containing protein [Acinetobacter baumannii ACICU] gi|213157237|ref|YP_002319282.1| GGDEF domain protein [Acinetobacter baumannii AB0057] gi|215483486|ref|YP_002325703.1| WspR [Acinetobacter baumannii AB307-0294] gi|239501830|ref|ZP_04661140.1| WspR [Acinetobacter baumannii AB900] gi|260555078|ref|ZP_05827299.1| WspR [Acinetobacter baumannii ATCC 19606] gi|301346166|ref|ZP_07226907.1| WspR [Acinetobacter baumannii AB056] gi|301596744|ref|ZP_07241752.1| WspR [Acinetobacter baumannii AB059] gi|332851678|ref|ZP_08433603.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013150] gi|332865947|ref|ZP_08436727.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013113] gi|332874511|ref|ZP_08442414.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6014059] gi|126387624|gb|ABO12122.1| putative two-component response regulator [Acinetobacter baumannii ATCC 17978] gi|169148956|emb|CAM86831.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|183209645|gb|ACC57043.1| GGDEF domain protein [Acinetobacter baumannii ACICU] gi|213056397|gb|ACJ41299.1| GGDEF domain protein [Acinetobacter baumannii AB0057] gi|213987853|gb|ACJ58152.1| WspR [Acinetobacter baumannii AB307-0294] gi|260411620|gb|EEX04917.1| WspR [Acinetobacter baumannii ATCC 19606] gi|323517992|gb|ADX92373.1| GGDEF domain-containing protein [Acinetobacter baumannii TCDC-AB0715] gi|332729685|gb|EGJ61020.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013150] gi|332734997|gb|EGJ66083.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013113] gi|332737355|gb|EGJ68279.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6014059] Length = 409 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 11/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL ++S LS+ D L+GL N +L + + L+I+ DID+FK ND Sbjct: 222 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDFFKPYND 281 Query: 145 NFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 + GH GD+ + ++ + + + V R GGEEF ++ Q+A I A L I Sbjct: 282 SLGHLKGDQCLKDIATAISSIAARSGDLVARYGGEEFLLLFPMTNAQQAKIQAERLMNAI 341 Query: 204 EN-SQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254 + + ++ S S ++TIS G+A + + IS + RAD ALY AK +GRN+ Sbjct: 342 KKIAIVHPCSSVSPYVTISVGVATTIPRLNDSISAFVSRADHALYQAKTNGRNQ 395 >gi|219848192|ref|YP_002462625.1| diguanylate cyclase with GAF sensor [Chloroflexus aggregans DSM 9485] gi|219542451|gb|ACL24189.1| diguanylate cyclase with GAF sensor [Chloroflexus aggregans DSM 9485] Length = 586 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 17/191 (8%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130 + LL ++G++ + ++ I L+ D L+ L+N F I Y +S Sbjct: 391 LELLAATVAGALHNAMRFAH--IQSLTITDVLTELVNRRHFFQILHHEIERSRRYRTPVS 448 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 I D+D+FKQ+ND +GH VGDK++ ++ + + R GGEE+ L + Sbjct: 449 IAMIDLDHFKQVNDTYGHVVGDKLLREVALRCRRYVRDVDILARYGGEEY-GLILPETRY 507 Query: 191 EAAILAND-LRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYV 246 E+A+LA + LR+ + + I G I +T+S G+A H +P S+++ AD+ALY+ Sbjct: 508 ESALLAAERLRQHVMSVPFTI-DGHLISMTLSIGVASFQADVHPDP-SSLVVDADRALYL 565 Query: 247 AKKSGRNRVVC 257 AK+ GRN VC Sbjct: 566 AKQRGRN-CVC 575 >gi|115378447|ref|ZP_01465607.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1] gi|310821486|ref|YP_003953844.1| response regulator [Stigmatella aurantiaca DW4/3-1] gi|115364553|gb|EAU63628.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1] gi|309394558|gb|ADO72017.1| Response regulator [Stigmatella aurantiaca DW4/3-1] Length = 322 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 87/176 (49%), Gaps = 12/176 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148 +R+ L++ D L+GL N + L Y LS+V D+D+ K IND GH Sbjct: 132 QQHRLRVLAQTDGLTGLANFRSLTLRLEEEFRRALRYQYPLSVVVIDLDHLKAINDGMGH 191 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VG++ I LS L F R GG+EF A + EAA A +R + N + Sbjct: 192 DVGNRAILALSTHLKNNLRESDFAARFGGDEFVALLPHQTAAEAAAFAERIRAGLRNVVV 251 Query: 209 NISSG-PS-IHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFS 259 S G P+ +++S GIA+ + P ++ AD ALYVAK+ GR+RVV S Sbjct: 252 QRSDGRPAPFGLSVSVGIADHSPEAPRENTDALMKAADAALYVAKREGRDRVVVHS 307 >gi|163849043|ref|YP_001637087.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222527011|ref|YP_002571482.1| diguanylate cyclase [Chloroflexus sp. Y-400-fl] gi|163670332|gb|ABY36698.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222450890|gb|ACM55156.1| diguanylate cyclase [Chloroflexus sp. Y-400-fl] Length = 370 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 81/167 (48%), Gaps = 19/167 (11%) Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 Q S D L+G+ N F I Y L+++ D+D+FKQ ND FGH GD+ Sbjct: 209 QQQSLTDPLTGVFNRRGFALRLSEEIERARRYQVTLALLLIDVDHFKQYNDTFGHLAGDE 268 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ ++ L V R GGEEFA ++ A +L LR++++ +++ Sbjct: 269 VLRMIAQLLSEGCCKHDIVARYGGEEFAVILPATAGDGAQVLGERLRRLVQ-----MAAW 323 Query: 214 PSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVV 256 P +TIS G A +P T +I RAD ALY AK GRN V Sbjct: 324 PLHPLTISVGGAV---LQPEMTDEHDLIARADSALYQAKAQGRNTCV 367 >gi|327188461|gb|EGE55675.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 402 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 14/177 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 S + ++ D L+G+LN + E+ ++++ FD+D+FK++ND FGH Sbjct: 193 SERHLRTMTLTDSLTGVLNRRGLLGYFEPSQERAHGEQRQVAVILFDLDHFKRVNDRFGH 252 Query: 149 PVGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD V IAF + G GR+GGEEFAA A + + EA +A +R E + Sbjct: 253 QAGDAVLIAFARMARQYIPGN--IFGRMGGEEFAAFAAVADQMEAEAIAEAIRT--EFCR 308 Query: 208 INISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +++G +I +T+S GIA + I +I AD+ALY AK +GRN V F + E Sbjct: 309 LPVATGEAIVPVTVSIGIALASSIDANIDKLISAADRALYAAKAAGRNCTVTFGETE 365 >gi|309779464|ref|ZP_07674225.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA] gi|308921705|gb|EFP67341.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA] Length = 624 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 31/188 (16%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGH 148 + RI L+ D L+GLLN SA +L N+ ++S++F D+D FK +ND GH Sbjct: 180 AQQRIRHLATHDTLTGLLNRSALEDRLEHALALARRNQSRVSVMFLDLDRFKNVNDTLGH 239 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRKII 203 GD ++ ++ +L V RLGG+EF A LG+ R++ Sbjct: 240 QFGDMLLREVAARLQACAREADTVARLGGDEFVVMLEALDGLGT------------RRVA 287 Query: 204 ENSQINISS-----GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 E IS+ G +++ +S GIA H + +T++ +AD A+Y+AK+ GRN Sbjct: 288 ERILSAISAPFHIEGQELYLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQT 347 Query: 258 F-SDIENN 264 F SD+++ Sbjct: 348 FTSDLDDR 355 >gi|289649229|ref|ZP_06480572.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 527 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 15/172 (8%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A ++ + I + QI + P + Sbjct: 396 RVVEQCIRRPGDVAARYGGEEIAVVLPGTDESSARQVAENILQAIRDEQIEHPASPFGIV 455 Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A +R + ++I AD+ALY AK GRNRV S+I +T Sbjct: 456 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 505 >gi|261822842|ref|YP_003260948.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pectobacterium wasabiae WPP163] gi|261606855|gb|ACX89341.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pectobacterium wasabiae WPP163] Length = 610 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+GL N S F + + +K + DID FK IND +GH GD V+ Sbjct: 452 DFLTGLPNRSTFFEQASAFFQLIQQNQHADKSCLAIIDIDSFKNINDKYGHLAGDAVLKE 511 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L+ + + V RLGGEEF S Q A + +RK IE + S+H Sbjct: 512 LAMLMRMSLRQEDLVARLGGEEFIILLKDVSYQTAVMTIERIRKAIEQHTLEYDR-QSLH 570 Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 TISAGIA R + I AD+ LY AK+ GRN Sbjct: 571 FTISAGIAAYRPEFASVEDWIQLADENLYSAKRQGRN 607 >gi|254283729|ref|ZP_04958697.1| ggdef domain protein [gamma proteobacterium NOR51-B] gi|219679932|gb|EED36281.1| ggdef domain protein [gamma proteobacterium NOR51-B] Length = 418 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 100/198 (50%), Gaps = 15/198 (7%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128 + L+++ ++ L Y+S +KE + +I+ S D L+G+ N +A S + ++ Sbjct: 220 VGLILLLVSQYYLRSYLS---IKEKLLEQLKIT--STTDTLTGIANRNALFESARALIQQ 274 Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA 181 L+ D+D FK IND +GH GD+ + + L FV GR+GGEEF Sbjct: 275 RQPGTFLAAAIIDLDLFKNINDTYGHQAGDETLIVFARLLDEYCNARKFVVGRIGGEEFG 334 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRA 240 + + + + L+ ++ ++ ISSG + +T SAG A KE + ++ A Sbjct: 335 VVCVTRNRDDMLNTLSSLKAALK--KVTISSGEQTFDVTFSAGYAVSTDKEELHELMKLA 392 Query: 241 DQALYVAKKSGRNRVVCF 258 D ALY +K SGRNR+ + Sbjct: 393 DFALYESKDSGRNRITLY 410 >gi|114561386|ref|YP_748899.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114332679|gb|ABI70061.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 312 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 9/169 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 ++ +I L D L+G+ N ++ + +N++LS++ DIDYFK INDNFGH Sbjct: 138 AHQQIESLVNTDQLTGMHNRRSYNQLAKQECARAIRFNQQLSLLVIDIDYFKVINDNFGH 197 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQ 207 GD ++ + + + R+GGEEF + + A I+A +R+ I ++S Sbjct: 198 DGGDSILKQFAQICSDLLRQSDSLSRIGGEEFTIILPMTDGEGAMIIAERIREHIAKHSF 257 Query: 208 INISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 + +I++T+S G++ + I + RAD A+Y AK+ GRN+V Sbjct: 258 HTTQTNNNINVTVSIGVSSLTAGDKVIQDLFSRADMAMYCAKRGGRNQV 306 >gi|288941699|ref|YP_003443939.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288897071|gb|ADC62907.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 428 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 9/163 (5%) Query: 107 DCLSGLLNHSAFISS-----LGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F + G+ + L+ V DID+FK++ND +GH GD+VI ++ Sbjct: 268 DYLTGLYNRRHFFETGETLYAGAKRRQITLAAVMLDIDHFKRVNDTYGHLAGDRVIKQVA 327 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L +GR GGEEF G + A+ LR + ++ I S+ +T Sbjct: 328 SLLACGVRQADLLGRYGGEEFCILLTGIDQSSLAMTLERLRSTVASTPIE-HEDQSLSVT 386 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 IS G A + + +I RAD LY AK+ GRNR V +E Sbjct: 387 ISLG-ATLALGDSLQAMINRADACLYHAKQGGRNRFVIDDSVE 428 >gi|237798396|ref|ZP_04586857.1| response regulator, putative/diguanylate cyclase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021248|gb|EGI01305.1| response regulator, putative/diguanylate cyclase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 551 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 12/158 (7%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L + L DID+FK++ND+ GHP+GD+VI LS Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRARREGKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLS 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + A + +++R + ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAVVMPDTDIHSAHKVLDEIR--LRFAEIHYPAQPADLSC 496 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ H + +S + +AD ALY AK +GRN+V Sbjct: 497 TFSAGVVSLGAHVDSLS-LASQADTALYRAKHAGRNQV 533 >gi|212636415|ref|YP_002312940.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212557899|gb|ACJ30353.1| GGDEF domain protein [Shewanella piezotolerans WP3] Length = 518 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 79/166 (47%), Gaps = 8/166 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + + L + DID+FK IND+FGH GDK Sbjct: 354 QKLNLLDTLTQLPNRAALQERMEIEYRNYKRTKQPLWVAVADIDHFKSINDSFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF SE + L N +R+ +++ Sbjct: 414 TLQVIAMALKNSLRETEFVSRFGGEEFVFLLPDVSESDIKPLLNRVREKVKSIPFKF-KN 472 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I +T+S G A+ E I+ RAD ALY AK R+RV+ S Sbjct: 473 QRITVTVSIGAAQIIENELITETFERADAALYKAKHQSRDRVIIDS 518 >gi|218244913|ref|YP_002370284.1| PAS/PAC sensor-containing diguanylate cyclase [Cyanothece sp. PCC 8801] gi|218165391|gb|ACK64128.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 8801] Length = 668 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 77/160 (48%), Gaps = 9/160 (5%) Query: 107 DCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+GL N S+ + L ++ DID+FKQ NDNFGH GD V+ + Sbjct: 503 DPLTGLFNRRYLEISINRELNTIIQDQDYSLGLIMLDIDHFKQFNDNFGHEAGDLVLQTV 562 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ L R GGEEF +S + A +R+ I+ +I S P I Sbjct: 563 ANCLQNHIRQSDIACRFGGEEFMIILPRASLNKTLERAEKIRESIKQLKIEYKSQPLDSI 622 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T S G+A + + + AD+ALY AKK GR+RVVC Sbjct: 623 TASFGVAAFPQNGTTLHELFIDADKALYQAKKQGRDRVVC 662 >gi|119468935|ref|ZP_01611960.1| diguanylate cyclase [Alteromonadales bacterium TW-7] gi|119447587|gb|EAW28854.1| diguanylate cyclase [Alteromonadales bacterium TW-7] Length = 319 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 30/202 (14%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---------- 122 +I+ IS L YI +L+I + SR+D L+GLLN F + Sbjct: 115 LITDRISALAMYILNVYANQLWILHK-----SRLDPLTGLLNRQTFDKKVMEIVTGNGFL 169 Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + DID FK +ND FGH VGD VIA ++ + F + R GG Sbjct: 170 LPREQADTKRCWYLAIVDIDLFKNVNDTFGHVVGDGVIAQVAKLIKNNFRIEDYAFRYGG 229 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI---TISAGIAERCHKEPIS 234 EEFA + +A LR+ ++S HI TIS G E + +S Sbjct: 230 EEFAIVFQSQTNTDALNALTRLRQ-------RVASHDFEHIQQLTISIGFLELQSADTVS 282 Query: 235 TIIYRADQALYVAKKSGRNRVV 256 +I+ +AD ALY +KK+GRN+V Sbjct: 283 SIVNQADMALYHSKKTGRNKVT 304 >gi|94263964|ref|ZP_01287766.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93455636|gb|EAT05818.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] Length = 302 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 13/163 (7%) Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G+ N F +L + LS++ DID+FK NDN+GH GD + + Sbjct: 139 LDGLTGIANRRNFDQALEREWKRAQRSTQPLSLLLLDIDFFKPYNDNYGHGAGDDTLRQV 198 Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI 216 + L P R GGEEF ++++ A + ++R+ I I + S + Sbjct: 199 ASGLQQSLSRPADLAARYGGEEFVCLLPETNQEGAQKMGEEIRRAIAGLAIPHAHSQVAD 258 Query: 217 HITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVV 256 HIT+S G A + P + ++ AD+ALY AK+SGRNRVV Sbjct: 259 HITVSVGAASMTANGNNNP-AQLLENADKALYRAKESGRNRVV 300 >gi|114047859|ref|YP_738409.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113889301|gb|ABI43352.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 467 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 4/156 (2%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGLLN F ++SL + + S+ D+D FK IND +GH VGD+VI L+ + Sbjct: 312 DPLSGLLNRRGFMPQLTSLTGTSTRYSVAMLDLDNFKMINDTYGHSVGDRVIQLLAQLIH 371 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + RLGGEEFA + + +RK I + +I+ T+S G Sbjct: 372 NHSRSQDIAARLGGEEFALVLRDIDVAQVYPVLERIRKSFAEMSIA-AEEHTIYCTVSIG 430 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 E ++++ AD+ALY AK G+N +V + Sbjct: 431 WVEYQQGITGESLLHLADKALYQAKAQGKNTIVKYQ 466 >gi|327190644|gb|EGE57732.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 417 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 12/187 (6%) Query: 89 ILKELFIS-YNRIS--QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 IL++L + +RI Q + D L+ + AF IS + +LS + FDID+ Sbjct: 154 ILEDLAAAAMDRIDLMQSAATDSLTEAMTRRAFKQEADQLISLALRHQHELSCIVFDIDH 213 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FKQ+ND +GH GD V+ ++ GR+GGEEFA Q A +A Sbjct: 214 FKQVNDRYGHAAGDAVLKAVASVCKATLRAGDLFGRIGGEEFAVVLPHVDRQGAFAVAEK 273 Query: 199 LRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 L I I+ G +H+T S G A + I T++ +AD A+Y AK GRNR V Sbjct: 274 LCAAIAFQPIHGDHGI-LHVTASLGSSALSIVSKDIETLLAQADAAMYQAKHGGRNRCVS 332 Query: 258 FSDIENN 264 +S I + Sbjct: 333 WSSIHAD 339 >gi|306821368|ref|ZP_07454976.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550586|gb|EFM38569.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 450 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 9/163 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++ L+ D L+ + N FIS + ++E +I FDID FK +NDN+GH +GD Sbjct: 279 KLFNLANFDMLTSISNRRYFISQVEQIMASDDFSE-ATICTFDIDNFKSVNDNYGHDIGD 337 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +A ++ + V R+GGEEF +A L +A + +DL + N +I ++ Sbjct: 338 MALADIAKLMNDKLEGIGIVARMGGEEF-SAFLNCRLNDAGDMIDDLLNAVRNIKIELND 396 Query: 213 GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 S+ TIS G+A + + + +AD ALY AK GR+R Sbjct: 397 HCISLKFTISGGMARVKKGDKLDKFLKKADTALYDAKHQGRDR 439 >gi|302188474|ref|ZP_07265147.1| GGDEF [Pseudomonas syringae pv. syringae 642] Length = 355 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 15/240 (6%) Query: 21 SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---IISIT 77 S S +I S ++ + +A L + L+P G++ V + + I S++ Sbjct: 97 SLSVAVMIILCSTLLVVYTRDYLLVA--ILAWCILSPAQGVDTDSVATMFMTLFFITSVS 154 Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134 + ++ + L+ + ++ +LS D L+ +LN A + +L ++ N + Sbjct: 155 LGSVMNHTYTRTLRTVLSLEHQFRELSLTDDLTAILNRRALMQALDNHVLNNSAGYFLML 214 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID FK IND FGH GD+ + ++ L G+ F GR+GGEEF S+ +A Sbjct: 215 DIDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAF-GRMGGEEFGVILPMCSDDDARD 273 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L I S + P +T SAG+A+ S ++ AD LY AK+ G++R Sbjct: 274 YVLSLLDCIRKSS---AVSP---LTCSAGLADITAAADSSAVLKTADINLYQAKRGGKDR 327 >gi|157962335|ref|YP_001502369.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157847335|gb|ABV87834.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 341 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 107 DCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+ LN AF + L + + L ++ DID+FK ND +GH +GD+V+ ++ +L Sbjct: 182 DALTSSLNRRAFDNDLKGILQQHPQGLCLIIADIDHFKVFNDTYGHQLGDQVLKAVTKRL 241 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITI 220 + R GGEEFA S + A LA +R+ +E + + G +I +I+ Sbjct: 242 TEACKDGTKLYRFGGEEFALIVPKSELRRARQLAESMRRSLEKLTLKDKRKGETINNISA 301 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+AE + +I RAD LY AK GRNRV+ Sbjct: 302 SFGVAEYQTDDTNIALIDRADSQLYQAKNLGRNRVM 337 >gi|77918195|ref|YP_356010.1| response regulator [Pelobacter carbinolicus DSM 2380] gi|77544278|gb|ABA87840.1| response regulator receiver modulated diguanylate cyclase [Pelobacter carbinolicus DSM 2380] Length = 417 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 14/152 (9%) Query: 112 LLNHSAFI-SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 L +H I + LG ++ L DID+FK++ND FGH GD + +++ L Sbjct: 272 LFDHGERIYNQLGGSDKNLCCAMLDIDHFKKVNDTFGHHAGDMTLKRVANLLQDKLPESS 331 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---SIHITISAGIAER 227 + R+GGEEF A GS E + L +R I +++ +S P ++HIT+S G+ Sbjct: 332 VLARIGGEEFCALVPGSKE-DVVRLFERIRCAI--AELPVSLAPDNETVHITVSIGVC-- 386 Query: 228 CHKEP---ISTIIYRADQALYVAKKSGRNRVV 256 EP + ++ RAD LY AKK GR+RV+ Sbjct: 387 --SEPGRNLLDMLSRADAYLYQAKKEGRDRVI 416 >gi|83644174|ref|YP_432609.1| response regulator [Hahella chejuensis KCTC 2396] gi|83632217|gb|ABC28184.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 427 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 10/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +LS D L+GL N F + Y +V DID+FK+IND + H VG Sbjct: 256 QLKELSIRDELTGLYNRRFFNEEVKVLHANALRYGNGFCLVLGDIDFFKRINDGYSHVVG 315 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-I 210 D+V+ ++ L+ V R GGEE A +S Q A + +RK IE + I Sbjct: 316 DEVLKQVAKILMNSIRNSDIVARYGGEEMVLALPNTSPQAAMEMMERIRKTIEQHPWDSI 375 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + G + +T+S GI + + E ++ AD+ LY AK +GRN+V S Sbjct: 376 AEG--MKVTMSFGICDETNGEHFEHMLAVADELLYKAKNNGRNQVCSLS 422 >gi|238797910|ref|ZP_04641401.1| hypothetical protein ymoll0001_35650 [Yersinia mollaretii ATCC 43969] gi|238718215|gb|EEQ10040.1| hypothetical protein ymoll0001_35650 [Yersinia mollaretii ATCC 43969] Length = 519 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 104 SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 ++ D ++ L N ++L + S++ DID+FK IND +GH VGD+VI L+ Sbjct: 366 AQTDPMTSLYNRRGLATTLEPIAQLGQPFSVIALDIDHFKLINDTYGHDVGDEVIKRLAT 425 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHIT 219 Q+ + R GGEEF G++ A +AN LR +E +I +I IT Sbjct: 426 QIRDSSRDTDILCRSGGEEFLMLLPGTTLDVATQVANRLRHNVEMMEIADIRP-----IT 480 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS G+A + + AD+ALY AK+ GRNRV Sbjct: 481 ISLGVAYWSGEGMPENALKLADEALYRAKQRGRNRV 516 >gi|330502907|ref|YP_004379776.1| sensory box protein [Pseudomonas mendocina NK-01] gi|328917193|gb|AEB58024.1| sensory box protein [Pseudomonas mendocina NK-01] Length = 1095 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 16/183 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 + EL + ++ L+ D L+ L N + IS L ++ + +++F D+D+FK I Sbjct: 646 ISELKQAQAQVQHLAYHDALTNLPNRALLMDRLTQQISLLKRHDLRGALLFLDLDHFKHI 705 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI------LA 196 ND+ GHPVGD V+ ++ +L V RLGG+EF G + + + +A Sbjct: 706 NDSLGHPVGDSVLRLVTARLEASVRLEDTVARLGGDEFVVLLSGLEGKRSEVTRHVRQVA 765 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + LR+++ ++ + G + +T S G+A H + ++ RAD ALY AK SGRN + Sbjct: 766 DKLRQLL--AEPMLLDGHRLQVTPSIGVALIPDHGNTPADLLKRADIALYRAKDSGRNAI 823 Query: 256 VCF 258 F Sbjct: 824 QLF 826 >gi|311696236|gb|ADP99109.1| GGDEF domain protein [marine bacterium HP15] Length = 367 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 72/160 (45%), Gaps = 8/160 (5%) Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N + L SI D+D FKQIND FGH GD V+ Sbjct: 193 ARTDELTGLANRRDMQNRLAMEFSRYQRSGHHFSIALIDLDLFKQINDQFGHDAGDDVLR 252 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + + V R GGEEF +S +A LA LR + ++ Sbjct: 253 EFAGLIRTVIRQADVAARWGGEEFLVLLPDTSLLQALTLAERLRSDVSRHAFRFRD-QAL 311 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +TISAG+ + ++ +AD LY AK+SGRNR+ Sbjct: 312 PVTISAGVCSIAKARSLDDLLKQADLHLYNAKESGRNRIA 351 >gi|260903009|ref|ZP_05911404.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio parahaemolyticus AQ4037] gi|308108366|gb|EFO45906.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio parahaemolyticus AQ4037] Length = 787 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 22/189 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQIN 143 + +EL + Y + +L+ D L+ L N H L S L +++ D+D FK +N Sbjct: 324 DMYEELNVIYKKTKRLAETDHLTQLANRHRFHQLATRELASPPSHLWVIYVDLDNFKYVN 383 Query: 144 DNFGHPVGDKVIAFLS-------DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--- 193 D +GH +GD ++ S + + +P F RL G+EF A L SS ++ Sbjct: 384 DKYGHELGDNLLKVFSTHIKNACQKFSQQYDSPCFGARLSGDEF--AILLSSNKDVGSIP 441 Query: 194 -ILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250 +LA +L K I N SQ ++ P +T S GIA+ + I+ ++ AD A+Y AK++ Sbjct: 442 DLLAKELLKPINNLSQTWANAFP---VTASVGIAQYPQDGQDIAKLLSNADAAMYQAKRA 498 Query: 251 GRNRVVCFS 259 G+N+ +S Sbjct: 499 GKNQYAYYS 507 >gi|56460549|ref|YP_155830.1| signal protein [Idiomarina loihiensis L2TR] gi|56179559|gb|AAV82281.1| Signaling protein with a ligand-binding sensor domain and GGDEF domain [Idiomarina loihiensis L2TR] Length = 970 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 14/166 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 + ++R D L+ L N AF L G+Y LS+ D+DYFK++ND + H Sbjct: 805 LETMARQDPLTNLGNRRAFDERLQHELNRCRRDGTY---LSLAIIDVDYFKEVNDRYLHT 861 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GDKV+ L++ L +V R GGEEFA S + A + +R+ I + + Sbjct: 862 IGDKVLIRLAEILNDEIRDIDYVARWGGEEFAVLITNSELEIAREASERMRERIATTLFD 921 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+A S+++ AD+ALY AK GRNRV Sbjct: 922 -DLVEDMKITVSIGVASSYDYADHSSLLVAADKALYQAKSEGRNRV 966 >gi|301513154|ref|ZP_07238391.1| WspR [Acinetobacter baumannii AB058] Length = 336 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 11/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL ++S LS+ D L+GL N +L + + L+I+ DID+FK ND Sbjct: 149 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDFFKPYND 208 Query: 145 NFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 + GH GD+ + ++ + + + V R GGEEF ++ Q+A I A L I Sbjct: 209 SLGHLKGDQCLKDIATAISSIAARSGDLVARYGGEEFLLLFPMTNAQQAKIQAERLMNAI 268 Query: 204 EN-SQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254 + + ++ S S ++TIS G+A + + IS + RAD ALY AK +GRN+ Sbjct: 269 KKIAIVHPCSSVSPYVTISVGVATTIPRLNDSISAFVSRADHALYQAKTNGRNQ 322 >gi|217969803|ref|YP_002355037.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T] gi|217507130|gb|ACK54141.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T] Length = 510 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 13/174 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQIN 143 +L + +++L+R D L+GL N H G +++ DID FK IN Sbjct: 333 DLARANEELARLARRDALTGLPNRLAVDERLHEESRRQPGPCGTGCAVLMIDIDSFKPIN 392 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD V+A ++ L FV R GGEEF ++ + A +A LR ++ Sbjct: 393 DTYGHATGDAVLALVAGLLAATVREADFVSRYGGEEFLVLLPDTALEGARTVAEKLRTVV 452 Query: 204 ENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 + ++ ITIS G+A ++T++ +AD ALY AK+SGRNR+V Sbjct: 453 AETAHPVAG----RITISIGLAMAAPGTGELATVVAQADAALYEAKRSGRNRLV 502 >gi|254225341|ref|ZP_04918953.1| GGDEF family protein [Vibrio cholerae V51] gi|125622182|gb|EAZ50504.1| GGDEF family protein [Vibrio cholerae V51] Length = 443 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 19/168 (11%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G+LN AF L N KL+++FFD+D FK+IND GH VGD V+ Sbjct: 269 LSERDSLTGILNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND---LRKIIENSQINISS 212 ++ +L F GRLGG+EF L + + ++ L K+ + Q+N Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEF-VVCLDLLQDHSGVINKAYLMLEKLQKPLQLN--- 384 Query: 213 GPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S+ I +S G+A E+ + P ++ AD+A+Y AK N V C Sbjct: 385 QESLEIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430 >gi|114562515|ref|YP_750028.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114333808|gb|ABI71190.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 635 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 13/174 (7%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDN 145 L+ S + + S+ D L+G+ N +N L+++ FDID FK IND+ Sbjct: 461 LWQSRRQFKRRSQTDYLTGIANRRHTFEQGKKRFYQAKKHNRSLAVIMFDIDNFKAINDH 520 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH +GD I + +GR+GGEEF + + +A +A LR IE+ Sbjct: 521 YGHDIGDLAIKACGRRARNWLKKNDILGRIGGEEFLIILPDTEQAQAVEIAERLRTSIES 580 Query: 206 SQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +Q + + ++ TIS +A + H+ + II +AD LY AK +GRN+VV Sbjct: 581 NQF-VFNDVKMNFTISVSVAMLTPQTHE--LVDIIKQADLGLYQAKDNGRNQVV 631 >gi|283851002|ref|ZP_06368287.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio sp. FW1012B] gi|283573648|gb|EFC21623.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio sp. FW1012B] Length = 507 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 4/137 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 LS+V D+D+FK IND G GD + L+ + R+GGEEFA Sbjct: 366 GRPLSVVMLDLDHFKAINDTHGPEAGDAFLKALAGLCRDLLRGQYLAARIGGEEFALLLP 425 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQAL 244 + A LA+ LR + +G +T+SAG++E R + + ++ RADQAL Sbjct: 426 DTDTAGALALADRLRLATAGRPL---AGLDQTVTLSAGVSEVRAGETTVDAVLSRADQAL 482 Query: 245 YVAKKSGRNRVVCFSDI 261 Y AK +GRN V+ + D+ Sbjct: 483 YAAKHAGRNHVLVYGDL 499 >gi|251797774|ref|YP_003012505.1| diguanylate cyclase with GAF sensor [Paenibacillus sp. JDR-2] gi|247545400|gb|ACT02419.1| diguanylate cyclase with GAF sensor [Paenibacillus sp. JDR-2] Length = 653 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 13/155 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL + S K +++ DID+FKQIND FGH VGD+++ +S + Sbjct: 500 DNLTGLHARHYLNEQIQSRQRKDPLGALILVDIDHFKQINDTFGHQVGDQILVQVSSIIR 559 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 R GGEE A G ++A +A +R +E + +T+S G Sbjct: 560 SSIRQGDIAARWGGEELAVYLPGIRSEQAYRIAERIRTHVEAETQPV-------VTVSCG 612 Query: 224 IAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++E K + ++ YRAD ALY AK +GRNR+ Sbjct: 613 VSEWTFENEKISVESLFYRADMALYEAKNNGRNRI 647 >gi|116253698|ref|YP_769536.1| sensory box GGDEF/EAL domain-containing protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258346|emb|CAK09448.1| putative sensory box GGDEF/EAL domain protein [Rhizobium leguminosarum bv. viciae 3841] Length = 717 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 11/180 (6%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFF 134 LLG IS + +E + +++ L+ D L+GL N +AF + + + + +++++ Sbjct: 268 LLG-ISQDVTEERTVEA-KLAHLAMHDSLTGLPNRAAFSNHINQRAVEATADSAIALLYI 325 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+D+FK IND+ GH GD ++ +S++L+ + V RLGG+EFA + A Sbjct: 326 DVDHFKNINDSKGHAAGDALLCQVSERLLQLAEEGDLVARLGGDEFAVVLELDEPERAGR 385 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 A L K + S+ G H+T S GIA H ++ AD ALY AK+SGR+ Sbjct: 386 FAQRLLKAL--SRAFDLDGAREHVTCSIGIALAPDHAGDADVLMRHADLALYAAKESGRS 443 >gi|226198707|ref|ZP_03794271.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9] gi|225929147|gb|EEH25170.1| diguanylate cyclase [Burkholderia pseudomallei Pakistan 9] Length = 462 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N L++V D+D+FKQ N Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTLLTLVMVDVDHFKQYN 334 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V G FV R GGEEFA G+ E+ AA +A R+ Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 394 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E +I AD ALY AK GRN Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446 >gi|163853176|ref|YP_001641219.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163664781|gb|ABY32148.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 395 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 18/176 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R ++++R D L+GL N ++++G+ + L + DID+FK+ ND GH G Sbjct: 221 ERNAEMARTDQLTGLFNRH-HLATIGADLIPKRDTQSLGALLIDIDHFKRFNDTQGHLAG 279 Query: 152 DKVIAFLSD----QLVVVFGTPMFVG---RLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 D+ I +SD LV VG R GGEEF G AA L +R+ +E Sbjct: 280 DRCIRTVSDLVREMLVPANENKPPVGTAVRFGGEEFLVLLPGMDAARAAALGEAIRRRVE 339 Query: 205 NSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + GP+ +T+S G+A+ + H E + T++ AD ALY AK GRNRV Sbjct: 340 GVGIPHPGLGPNAVVTLSIGVADWKKGHTE-LDTLVNAADAALYQAKNLGRNRVAV 394 >gi|302520655|ref|ZP_07272997.1| diguanylate cyclase [Streptomyces sp. SPB78] gi|302429550|gb|EFL01366.1| diguanylate cyclase [Streptomyces sp. SPB78] Length = 207 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 15/155 (9%) Query: 104 SRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +R D L+GL AF +++ +V D+D+FKQIND +GH GD ++A ++ + Sbjct: 30 ARRDPLTGLWTRDAFTRKARRLLRDKRAVVVLADVDHFKQINDRYGHAAGDALLASVARR 89 Query: 162 LVVVFGTPMFVGRLGGEEFAAAAL---GSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 L G GRLGG+EFAA L G++ A+L L + E +++ Sbjct: 90 LAHATGPAGVCGRLGGDEFAAVLLDKDGTAADLLALLHGVLARPAEGQPSEVAT------ 143 Query: 219 TISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250 T+S G R P +S ++ RAD+A+Y AK++ Sbjct: 144 TVSLGWV-RASDHPGNDLSALLARADEAMYEAKRA 177 >gi|257057938|ref|YP_003135826.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 8802] gi|256588104|gb|ACU98990.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 8802] Length = 668 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 77/160 (48%), Gaps = 9/160 (5%) Query: 107 DCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+GL N S+ + L ++ DID+FKQ NDNFGH GD V+ + Sbjct: 503 DPLTGLFNRRYLEISINRELNTIIQDQDYSLGLIMLDIDHFKQFNDNFGHEAGDLVLQTV 562 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ L R GGEEF +S + A +R+ I+ +I S P I Sbjct: 563 ANCLQNHIRQSDIACRFGGEEFMIILPRASLDKTLERAEKIRESIKQLKIEYKSQPLDSI 622 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T S G+A + + + AD+ALY AKK GR+RVVC Sbjct: 623 TASFGVAAFPQNGTTLHELFIDADKALYQAKKQGRDRVVC 662 >gi|187777039|ref|ZP_02993512.1| hypothetical protein CLOSPO_00584 [Clostridium sporogenes ATCC 15579] gi|187773967|gb|EDU37769.1| hypothetical protein CLOSPO_00584 [Clostridium sporogenes ATCC 15579] Length = 892 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 104/210 (49%), Gaps = 16/210 (7%) Query: 61 LEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAF 118 LE I +E L ++ S+ L Y + + + E +I L+ D L+GL N Sbjct: 427 LEEIYIEELRKWFSAVVYSMELDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKI 486 Query: 119 ISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 I ++ N++ +++F D+D+FK IND GH VGD V+ +S + ++ G +G Sbjct: 487 IETINKTIKNYRNKRFAVLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLIGPNHKIG 546 Query: 174 RLGGEEFAAA----ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 RLGG+EF ++ +E+ A + L I+ + ++ G SI I++ + Sbjct: 547 RLGGDEFIIVQIINSISDAEKLAGKICTTLNHPIKYKEDDLFIGASIGISVYPEDGKDT- 605 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ST++ AD A+Y AKK+G + +S Sbjct: 606 ----STLMKNADAAMYAAKKNGGYKYEVYS 631 >gi|53805133|ref|YP_113023.1| GGDEF domain-containing protein [Methylococcus capsulatus str. Bath] gi|53758894|gb|AAU93185.1| GGDEF domain protein [Methylococcus capsulatus str. Bath] Length = 385 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 98/190 (51%), Gaps = 16/190 (8%) Query: 79 SLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128 ++L+G + GS+ L ++ + QL+ D L+ + N F + + Sbjct: 196 AILVGNVLGSLCFGLIVAEELNAELHQLASFDSLTRIYNRRVFENLATDELLRARTKRVP 255 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S++ DID+FKQ+ND GH GD + +++ + + R GGEEF ++ Sbjct: 256 VSLLMIDIDHFKQVNDRHGHAAGDAALVRVAETMEESLRHRDLLCRYGGEEFGVLLPATA 315 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALY 245 +A +A LR ++ + G +I +T+S G+A C + P +S + + AD+ALY Sbjct: 316 RAQALRIAERLRLATMHAGF-LYGGEAIPLTVSIGVA--CIEGPPYDLSLLKHDADRALY 372 Query: 246 VAKKSGRNRV 255 VAK++GRNRV Sbjct: 373 VAKQAGRNRV 382 >gi|77460887|ref|YP_350394.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gi|77384890|gb|ABA76403.1| putative GGDEF domain membrane protein [Pseudomonas fluorescens Pf0-1] Length = 501 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 14/188 (7%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIV 132 L L ++ L+ + ++QL+ D L+G+ N SL + LS++ Sbjct: 315 LWLTWLLARELRLRQRAERELAQLAATDALTGVANRRMLDQSLRHEWFRAQRSGKPLSLL 374 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191 D D+FK ND GH GD+ + L+ + P V R GGEEF+ + Sbjct: 375 MIDADHFKAFNDRHGHQAGDQALRELARVITTNVRRPADLVARYGGEEFSVILAETDSVG 434 Query: 192 AAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAK 248 A +A +R +E S +N P +T+S GI+ IS +++ AD+ALY AK Sbjct: 435 AQQIAEHIRAAVEQLSSVNEDQSP---MTVSIGISTWTATSEISLEQLLFAADKALYQAK 491 Query: 249 KSGRNRVV 256 + GRNRVV Sbjct: 492 EGGRNRVV 499 >gi|320155563|ref|YP_004187942.1| pole remodelling regulatory diguanylate cyclase [Vibrio vulnificus MO6-24/O] gi|319930875|gb|ADV85739.1| pole remodelling regulatory diguanylate cyclase [Vibrio vulnificus MO6-24/O] Length = 404 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 5/159 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 N + +++ D L+GL N S + E I DID+FK++ND +GH GD + Sbjct: 249 NELYRMANQDALTGLWNRRYLFSQSCNSCELRHIAMLDIDHFKKVNDTYGHDGGDIALKT 308 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +++ L + F + V R GGEEF + S + L + +R+ +E + I +IH Sbjct: 309 VANILKIYFPGEI-VARFGGEEFCIQSCQSYDDFVTRLEH-MRQRVEKTTI-THKAHNIH 365 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ITIS G+A ++ + I AD LY AK +GRN+VV Sbjct: 366 ITISIGVASL--QDELENQIKEADGYLYQAKANGRNQVV 402 >gi|315643935|ref|ZP_07897105.1| diguanylate cyclase [Paenibacillus vortex V453] gi|315280310|gb|EFU43599.1| diguanylate cyclase [Paenibacillus vortex V453] Length = 370 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 9/199 (4%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNE 127 V+ ++ I +L YI S +LF+ + ++ + L L +S ++E Sbjct: 170 VLATVVIYMLTEYIHTS--NKLFLQMKKNAETDHLTSLHNLRQFEQLLSERFLEAQHFSE 227 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 +L ++ DID+FK+IND +GH GD V+ LS L + V R GGEEF+ + Sbjct: 228 RLGVLVVDIDHFKKINDTYGHAAGDVVLQQLSKVLREHSRSFDEVSRNGGEEFSVLVPEA 287 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQAL 244 + E A +A +R +E + G + IT+S G A + + ++ +AD L Sbjct: 288 TIDETAAIAERIRAAVERHVFVLEDGTRLRITVSIGAAVHPDTVRSKDAKELLQQADHEL 347 Query: 245 YVAKKSGRNRVVCFSDIEN 263 Y AK SGRNRV +I + Sbjct: 348 YRAKNSGRNRVCSAVEIND 366 >gi|284053398|ref|ZP_06383608.1| signal transduction histidine kinase [Arthrospira platensis str. Paraca] Length = 1042 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 20/197 (10%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128 +T L + G + +L I++ + ++ +D L+G+ N F L + Sbjct: 841 LTEQLAIAIQQGELYHQLQIAHQELEKVYNLDALTGIPNRRHFDHVLQHEWLQLQREQQP 900 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 LSI+ DIDYFK ND +GH GDK + ++D L P V R GGEEF L + Sbjct: 901 LSIIMCDIDYFKCYNDTYGHIAGDKCLEKVADALKKCLKRPRDLVARYGGEEF-VILLPN 959 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI------HITISAGIAER--CHKEPISTIIYR 239 + E AI ++ + I+ + ++ P +T+S GIA + ++ + +I+ Sbjct: 960 TPTEGAI---EISQQIQEAVFELNMEPGAIPANFQRVTMSMGIASQIPTPQQSPTQLIFT 1016 Query: 240 ADQALYVAKKSGRNRVV 256 AD ALY AK +GRN+ V Sbjct: 1017 ADCALYQAKNNGRNQYV 1033 >gi|254459022|ref|ZP_05072445.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] gi|207084293|gb|EDZ61582.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] Length = 829 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 119/262 (45%), Gaps = 28/262 (10%) Query: 16 EKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTP-FYGLEYILVENLSLVII 74 +K L + I F I FI +++ I N + I L G+E I N I Sbjct: 310 DKTLRNNRQSLVAILFFIIIVTFITSLVIINN--MLSIPLKKILNGIEIISKGNYENRI- 366 Query: 75 SITISLLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GS 124 IT LG IS ++ E+ ++ +L+ +D L+ + N FI +L Sbjct: 367 DITSKDELGAISSQFNNMADEIAKRETQLDELAHVDPLTKIPNRVMFIETLEKSISRAKR 426 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--A 182 N KL++ F D+D FK +ND GH VGDK++ ++ L +V + R+GG+EF Sbjct: 427 LNTKLAVFFLDLDDFKNVNDTLGHYVGDKLLIEIAKNLSIVMRESDTISRIGGDEFNILI 486 Query: 183 AALGSSEQEAAILANDLRKI-----IENSQINISSGPSIHITISAGIAERCHKEPISTII 237 L S I ++++ IEN+ I IS I I G E +T++ Sbjct: 487 EDLESLSHIGEIAEKFIKQMTIPLYIENNAITISGSIGISIYPDDG-------EDTTTLL 539 Query: 238 YRADQALYVAKKSGRNRVVCFS 259 AD A+Y AK +GRN+ FS Sbjct: 540 KNADLAMYKAKDNGRNQYSFFS 561 >gi|187920623|ref|YP_001889655.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] gi|187719061|gb|ACD20284.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] Length = 604 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 23/187 (12%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 + L + L+ D L+GL N F+ L + E L+++F D+D FKQI Sbjct: 396 MDALHAKQRELVHLATHDVLTGLPNRVLFMEKLENSIDEATRREEGLAVLFVDLDRFKQI 455 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLR 200 ND FGH VGDKV+ ++ +L V + V RLGG+EF G S+E AI + + Sbjct: 456 NDQFGHAVGDKVLVAVARRLKQVLCSADVVARLGGDEFIVLIEGPRSAEAAPAIASRIMA 515 Query: 201 KIIENSQIN---ISSGPSIHITI---SAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + E Q++ ++ G SI I+ +G AE ++ AD A+Y AK GR Sbjct: 516 ALNEELQVDGQGMTVGASIGISQFPDDSGTAEE--------LLLNADAAMYAAKSGGRCA 567 Query: 255 VVCFSDI 261 + + D+ Sbjct: 568 YMRYHDV 574 >gi|28900943|ref|NP_800598.1| c-di-GMP phosphodiesterase A-like protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836713|ref|ZP_01989380.1| biofilm architecture maintenance protein MbaA [Vibrio parahaemolyticus AQ3810] gi|260366157|ref|ZP_05778617.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio parahaemolyticus K5030] gi|260879799|ref|ZP_05892154.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus AN-5034] gi|260894473|ref|ZP_05902969.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus Peru-466] gi|28809389|dbj|BAC62431.1| c-di-GMP phosphodiesterase A-related protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750062|gb|EDM60807.1| biofilm architecture maintenance protein MbaA [Vibrio parahaemolyticus AQ3810] gi|308086383|gb|EFO36078.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus Peru-466] gi|308092157|gb|EFO41852.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus AN-5034] gi|308114908|gb|EFO52448.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio parahaemolyticus K5030] gi|328470846|gb|EGF41757.1| c-di-GMP phosphodiesterase A-like protein [Vibrio parahaemolyticus 10329] Length = 787 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 22/189 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQIN 143 + +EL + Y + +L+ D L+ L N H L S L +++ D+D FK +N Sbjct: 324 DMYEELNVIYKKTKRLAETDHLTQLANRHRFHQLATRELASPPSHLWVIYVDLDNFKYVN 383 Query: 144 DNFGHPVGDKVIAFLS-------DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--- 193 D +GH +GD ++ S + + +P F RL G+EF A L SS ++ Sbjct: 384 DKYGHELGDNLLKVFSTHIKNACQKFSQQYDSPCFGARLSGDEF--AILLSSNKDVGSIP 441 Query: 194 -ILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250 +LA +L K I N SQ ++ P +T S GIA+ + I+ ++ AD A+Y AK++ Sbjct: 442 DLLAKELLKPISNLSQTWANAFP---VTASVGIAQYPQDGQDIAKLLSNADAAMYQAKRA 498 Query: 251 GRNRVVCFS 259 G+N+ +S Sbjct: 499 GKNQYAYYS 507 >gi|332306817|ref|YP_004434668.1| diguanylate cyclase with TPR repeats [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174146|gb|AEE23400.1| diguanylate cyclase with TPR repeats [Glaciecola agarilytica 4H-3-7+YE-5] Length = 721 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 26/191 (13%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF------------------ 133 EL +Y + +S D L+G+ N + +G+ EK V+ Sbjct: 491 ELQAAYQEMEAISLTDKLTGVHNRRFLENQIGADLEKSQRVYTDWHDGKTPQPQQADIVV 550 Query: 134 --FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 D+D+FK++ND +GH GD+V+ L+ +L +VF ++ R GGEEF A + + Sbjct: 551 FMIDMDHFKRVNDEYGHGAGDEVLQQLTQRLALVFRQSDYIVRWGGEEFVGVARFINRSD 610 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALY 245 A+ LA L + + + +S+G S + T S G A T+I AD LY Sbjct: 611 ASNLAQRLLEEVGATPFTLSNGASTYHTCSVGYACSPRALHHNQANDWQTLIALADTCLY 670 Query: 246 VAKKSGRNRVV 256 AK +GRN V Sbjct: 671 EAKNNGRNAWV 681 >gi|291570883|dbj|BAI93155.1| PleD-like protein [Arthrospira platensis NIES-39] Length = 1040 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 20/197 (10%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128 +T L + G + +L I++ + ++ +D L+G+ N F L + Sbjct: 839 LTEQLAIAIQQGELYHQLQIAHQELEKVYNLDALTGIPNRRHFDHVLQHEWLQLQREQQP 898 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 LSI+ DIDYFK ND +GH GDK + ++D L P V R GGEEF L + Sbjct: 899 LSIIMCDIDYFKCYNDTYGHIAGDKCLEKVADALKKCLKRPRDLVARYGGEEF-VILLPN 957 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI------HITISAGIAER--CHKEPISTIIYR 239 + E AI ++ + I+ + ++ P +T+S GIA + ++ + +I+ Sbjct: 958 TPTEGAI---EISQQIQEAVFELNMEPGAIPANFQRVTMSMGIASQIPTPQQSPTQLIFT 1014 Query: 240 ADQALYVAKKSGRNRVV 256 AD ALY AK +GRN+ V Sbjct: 1015 ADCALYQAKNNGRNQYV 1031 >gi|238794159|ref|ZP_04637775.1| Predicted diguanylate cyclase [Yersinia intermedia ATCC 29909] gi|238726557|gb|EEQ18095.1| Predicted diguanylate cyclase [Yersinia intermedia ATCC 29909] Length = 366 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 21/243 (8%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI-ISITISL-LLGY------- 84 F+IF + I +++ FL + T L IL+++ + I TI L L+G+ Sbjct: 112 LFTIFFISTIALSDNFLAFCLHTAPSALTVILLDDFQNIFRILFTIMLPLIGFSLHHLML 171 Query: 85 -----ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135 + ++ L+ + S LS ID L+ L N + L + + ++ D Sbjct: 172 RRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYVLLLD 231 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK NDN+GH +GD+ + ++ + + V R GGEEF SE+ A+ L Sbjct: 232 IDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 291 Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A +R+ + I + S +T+SAGI+ +++ + AD+ALY AKK+GRN Sbjct: 292 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLASSLKAADEALYRAKKNGRN 350 Query: 254 RVV 256 +V Sbjct: 351 KVA 353 >gi|119472673|ref|ZP_01614643.1| putative GGDEF domain membrane protein [Alteromonadales bacterium TW-7] gi|119444798|gb|EAW26100.1| putative GGDEF domain membrane protein [Alteromonadales bacterium TW-7] Length = 342 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 9/220 (4%) Query: 44 FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL-FISYNRISQ 102 I++ L + + P Y + N +I+++ +S + + I + + + + I Sbjct: 117 LISSFCLLFASVIPLYSFLSLGGANSLHLIVNLGLSYMTIWTVSHIYEAMRYSNQETILN 176 Query: 103 LSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 L+ D L+ N A S +E + + DID+FK++ND +GH GD V+ L+ Sbjct: 177 LALRDPLTKAFNRRALQSRFSKQTVIDEPVCVALIDIDFFKKVNDKYGHDAGDAVLTQLT 236 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + V F V R+GGEEF + + +Q A L N L K +E+ S+ IT Sbjct: 237 ELFVEKFKEDN-VFRMGGEEF-VVVINTDQQAAYDLINCLIKTVESHHFTYEK-DSLKIT 293 Query: 220 ISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257 IS G E +S I+ AD LY+AK +GRN VC Sbjct: 294 ISIGFEELVTDSFVDLSKILKAADGYLYIAKDNGRNCAVC 333 >gi|95930360|ref|ZP_01313097.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95133612|gb|EAT15274.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 505 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 97/179 (54%), Gaps = 19/179 (10%) Query: 91 KELFISYNRISQLSRIDCLSGLLN----HSAFISSL---GSYNEKLSIVFFDIDYFKQIN 143 +EL +S+L+ D L+GL N H F L Y +++ FDID FK IN Sbjct: 325 QELATVNTELSRLAFEDSLTGLYNLRYFHDYFDRELQRSARYGTVFTLLMFDIDDFKAIN 384 Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 D+ GH GD+V IA LS ++ T + V R GGEEFAA +S +A +AN LR Sbjct: 385 DSHGHQAGDQVLIEIANLSRNMLR--NTDVMV-RYGGEEFAALLPETSLPQAHEIANRLR 441 Query: 201 KIIENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IE + + + + +T+S G+A E+ K + +I AD+ LY +KK+G+NR+ Sbjct: 442 QEIEKLTV-VWNNKKLQVTVSMGLAFYDPEQGTKNK-NELIDIADKGLYQSKKAGKNRI 498 >gi|94501242|ref|ZP_01307764.1| PAS:GGDEF protein [Oceanobacter sp. RED65] gi|94426669|gb|EAT11655.1| PAS:GGDEF protein [Oceanobacter sp. RED65] Length = 312 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 11/171 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 L++L +Y + Q+SR D L+G LN AF L E+ +++VF D+D FKQ+ Sbjct: 145 LQQLNEAYAELEQMSRKDGLTGALNIRAFKEELLDAMERYHRSGQNVTLVFIDLDDFKQV 204 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH VGD+V+ + L+ V R GG+EFA ++EQEA L Sbjct: 205 NDQYGHIVGDEVLTTFAKTLLNQSRRCDAVARYGGDEFAMLLDDTTEQEALDFCKRLGSE 264 Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252 IE +G + ++ S G+++ + + + ADQ +Y K+S + Sbjct: 265 IE---FETGNGKTKSMSFSFGMSQLKKNHRTVEDWFAEADQHMYRDKESSK 312 >gi|317057842|ref|YP_004106309.1| diguanylate cyclase [Ruminococcus albus 7] gi|315450111|gb|ADU23675.1| diguanylate cyclase [Ruminococcus albus 7] Length = 336 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 10/185 (5%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIV 132 I S L+ YI+ I + + S +++Q++ D L+ L N I L N E + Sbjct: 157 IVFSFLIIYINKQI-RSIINSEIKLTQMAHKDRLTDLYNRHYMIDRLTEVNSMKETAVLA 215 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID FK IND +GH GD+V+ +S +L G + R GGEEF L +++ E Sbjct: 216 MADIDDFKTINDVYGHNAGDEVLKVISKKLKDTCAGCD--IARWGGEEF--LILFNNDDE 271 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + LR I +S + G SI ITI+ G+A + I D LY KKSG Sbjct: 272 VMKIIEKLRSDIASSPVEF-EGKSIPITITVGVAPARKGRTLDEWIQVVDNKLYYGKKSG 330 Query: 252 RNRVV 256 +N+V+ Sbjct: 331 KNKVI 335 >gi|126457325|ref|YP_001074228.1| diguanylate cyclase [Burkholderia pseudomallei 1106a] gi|126231093|gb|ABN94506.1| diguanylate cyclase [Burkholderia pseudomallei 1106a] Length = 462 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N L++V D+D+FKQ N Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTLLALVMVDVDHFKQYN 334 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V G FV R GGEEFA G+ E+ AA +A R+ Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 394 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E +I AD ALY AK GRN Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446 >gi|323528830|ref|YP_004230982.1| diguanylate cyclase [Burkholderia sp. CCGE1001] gi|323385832|gb|ADX57922.1| diguanylate cyclase [Burkholderia sp. CCGE1001] Length = 477 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 13/176 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 L + + + +L+ D L+G+ N AF ++L ++ ++ LS++ DID+FK ND Sbjct: 291 RLAAALDELKRLATTDPLTGVANRRAFEAALTAHWQRASHDGSTLSLLMIDIDFFKLFND 350 Query: 145 NFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 +GH GD+ + +++ L V G+ V R GGEEF ++ AA +A + Sbjct: 351 RYGHVEGDRCLVLVAECLARAVRRGSDQ-VARYGGEEFVVLLPDTNAASAAHVARRMCDA 409 Query: 203 IENSQINISSGPSIH-ITISAGIAERC-HKEPISTIIYR-ADQALYVAKKSGRNRV 255 + + PS ITIS G+A R +T++ R AD ALY+AK +GR RV Sbjct: 410 VAALCVPNEGSPSFRKITISVGVASRVIDAGSETTVLTRAADHALYLAKAAGRGRV 465 >gi|206601953|gb|EDZ38435.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptospirillum sp. Group II '5-way CG'] Length = 878 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 15/184 (8%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LS 130 + LLL ++ + +E +I +L+ ID L+GLLN +A I L + EK ++ Sbjct: 429 VVLLLKDVTAKMERE-----RQIWRLANIDDLTGLLNRTALIERLANEMEKSRRNQGAMA 483 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++F D D FK IND GH GD + + +L V RLGG+EF S++ Sbjct: 484 LLFLDFDDFKGINDTLGHSAGDSFLKVIGHRLSGSVRPTDIVARLGGDEFVVVVSLESDE 543 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249 + A + I+ + ++I S ++ ++S GIA E + ++ +AD A+Y AK Sbjct: 544 KILSFAQKILDIL-GAPVSIQS-QTVQTSVSVGIATYPRDAESVEDLLRKADIAMYQAKN 601 Query: 250 SGRN 253 G+N Sbjct: 602 KGKN 605 >gi|85712210|ref|ZP_01043262.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Idiomarina baltica OS145] gi|85694018|gb|EAQ31964.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Idiomarina baltica OS145] Length = 450 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 8/163 (4%) Query: 98 NRISQLSRIDCLSGLLNH---SAFISSLGSYN-EKLS---IVFFDIDYFKQINDNFGHPV 150 +R+ +L+ D L+GL N + F L N E+L+ V DID+FKQ+ND FGH Sbjct: 284 DRLERLAYTDFLTGLSNRLFINEFFERLVYQNRERLNHYYCVLVDIDHFKQLNDQFGHDA 343 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ + + R+GGEEF + + A + LRK IEN +I Sbjct: 344 GDSVLQAVAIEFTDSLRSDDVCARVGGEEFMLLIHADDKVDIANIVERLRKNIENLKIE- 402 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I T+S G+ + ++ + RAD+ALY +K GRN Sbjct: 403 HDDEIITTTVSIGVTKLQEQDSFNLAYKRADKALYQSKSDGRN 445 >gi|114563098|ref|YP_750611.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114334391|gb|ABI71773.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 340 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 3/127 (2%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ DID FK ND FGH +GDKV+A+++ + V R GGEEF + Sbjct: 209 SLLMIDIDNFKMFNDTFGHLIGDKVLAYVALAMKHTVKGDDLVARYGGEEFVVMLPNAKL 268 Query: 190 QEAAILANDLRKIIENSQINISSGPSI---HITISAGIAERCHKEPISTIIYRADQALYV 246 +A +A +R+ I Q++I HIT+S G+A + + T++ RAD+ LY+ Sbjct: 269 IDAVNVAEKIRERIALKQLSIGKEKKQNLGHITVSIGVATIQTGDDVDTLLSRADEQLYI 328 Query: 247 AKKSGRN 253 AK +G+N Sbjct: 329 AKAAGKN 335 >gi|327194235|gb|EGE61099.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 309 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 67/125 (53%), Gaps = 1/125 (0%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + FDID FKQIND FGH GD V+ + ++ GR+GGEEF +S + Sbjct: 183 LAVFDIDKFKQINDRFGHHAGDLVLRDFAHRIHQNVRRNDCFGRVGGEEFLLVMPSTSPE 242 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +A + + +I S+ ++ P T SAGIA + S + RADQALY AK S Sbjct: 243 DALAMVERMLTVIRFSRP-LADSPDFSYTCSAGIAASLPSDSASELYRRADQALYDAKMS 301 Query: 251 GRNRV 255 GR+RV Sbjct: 302 GRDRV 306 >gi|313618171|gb|EFR90255.1| ggdef domain-containing protein [Listeria innocua FSL S4-378] Length = 375 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 15/201 (7%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123 VE + ++ +LL+ Y I K + N +++ + D L+ L N F Sbjct: 171 VEIVEYFLLFFVTALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLSNMRFFTQQFAWI 229 Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGG 177 + LS+ DID+FK+IND GH G+ V+A S L F R+GG Sbjct: 230 FNKSQKRKKALSLFIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGG 289 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPIST 235 EEFA ++AA++A+ LR IE ++ N SG ++T+S G+A + + Sbjct: 290 EEFAVLLQNVGTEQAALIADFLRDEIERAKFPYNPVSG---NVTVSIGVASMGYNYRTTE 346 Query: 236 IIYR-ADQALYVAKKSGRNRV 255 ++ ADQALY AK++GRN++ Sbjct: 347 SLFEAADQALYQAKQNGRNQI 367 >gi|304412210|ref|ZP_07393819.1| diguanylate cyclase with GAF sensor [Shewanella baltica OS183] gi|307306954|ref|ZP_07586694.1| diguanylate cyclase with GAF sensor [Shewanella baltica BA175] gi|304349476|gb|EFM13885.1| diguanylate cyclase with GAF sensor [Shewanella baltica OS183] gi|306910532|gb|EFN40962.1| diguanylate cyclase with GAF sensor [Shewanella baltica BA175] Length = 599 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 10/177 (5%) Query: 89 ILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQIND 144 +L++ +S N ++ +++ D L+GL N F L + + + D+DYFK ND Sbjct: 413 VLQQALVSANAQLKEMAETDELTGLANRRPFTERLETVLQADIPAGLFMLDVDYFKSYND 472 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 +GH GD V+ ++D L P + R+GGEEFA + + +A L + Sbjct: 473 TYGHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQLCYL 532 Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E I + P +TIS G ++ ++ ++ RAD LY AK GRNRV Sbjct: 533 VEQLNIPHQASPLAVVTISIGSVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRV 589 >gi|239905136|ref|YP_002951875.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239795000|dbj|BAH73989.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 418 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 9/172 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144 E+ ++ + + D L+GL N F + L + +++ DID+FK++ND Sbjct: 246 EMLEYIQKLRETAIRDPLTGLYNRRHFFEAAKTLHADLARGDTPMTLAMIDIDFFKKVND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ ++ L F RLGGEEF A G S Q+A +DLR IE Sbjct: 306 TYGHAAGDEVLKHVAQGLGNRFRGHDVAARLGGEEFCVLARGLSGQQAMAAFDDLRNSIE 365 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+ + +I +T+S GI ++ H + ++ AD ALY AK++GRNRV+ Sbjct: 366 RSKAK-AGKTAIGVTVSIGICDKPHG-SVDAMLAAADAALYKAKRTGRNRVL 415 >gi|167625186|ref|YP_001675480.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167355208|gb|ABZ77821.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 627 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 18/174 (10%) Query: 95 ISYNRI-SQLSRIDCLSGLLNHSA-FISSLGSYNEK------LSIVFFDIDYFKQINDNF 146 I NR+ S L+ D L+ L N +I + + E LS++ FD D+FK IND F Sbjct: 456 IQKNRLLSALALTDDLTQLPNRRYIYIKAQHCFEEAQKTDRPLSVIAFDADHFKLINDKF 515 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIEN 205 GH VGD + L+D + + R+GGEEF + +A +A L R++ EN Sbjct: 516 GHEVGDHALELLADTCRSLISSTYETARVGGEEFLIVLTDIDKPQAFEIAQSLVRRVSEN 575 Query: 206 SQINISSGPS-IHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255 + S+ P ++TISAG+A C +S ++ RAD ALY AK GRN+ Sbjct: 576 ---DFSAFPQGFNMTISAGVA--CLSSTDSKLSQLLKRADDALYQAKSLGRNQA 624 >gi|160876271|ref|YP_001555587.1| diguanylate cyclase [Shewanella baltica OS195] gi|160861793|gb|ABX50327.1| diguanylate cyclase [Shewanella baltica OS195] Length = 579 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 18/196 (9%) Query: 74 ISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS-------Y 125 + +T +L L + S+ E SY ++ ++ D L+G N L + Sbjct: 377 MPVTDNLELQQMVNSL--ETLKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDH 434 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184 N L I+ FDID FKQ ND +GH GD+ + + + + P + R GGEEF Sbjct: 435 NMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVL 494 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEP----ISTIIYR 239 S +E A LR+ I + +I P I TISAGI C + P +++I R Sbjct: 495 PSSHLEEVYQFAERLREKIISLEIPHEDSPHAGILTISAGIT--CWQLPQQLDANSLINR 552 Query: 240 ADQALYVAKKSGRNRV 255 AD+ALY AK +GRNR Sbjct: 553 ADEALYHAKLTGRNRT 568 >gi|163851936|ref|YP_001639979.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163663541|gb|ABY30908.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 405 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 121/268 (45%), Gaps = 42/268 (15%) Query: 9 LSIWLCHEKNLESFSPHT---------FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY 59 L+IW ++ L S P + I + F++ I + IA +P++ Sbjct: 136 LTIWQGRDEPLVSRYPALVLLATYAGLYWIRLPLAFTLPIPASVAIA---------SPWF 186 Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 + L S+ + ++ ++ KE R++ + D L+G+ N A + Sbjct: 187 AI---------LCFAGTLFSVAIAFVFMALTKERAEREQRLA--AETDSLTGIANRRALV 235 Query: 120 SSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIA---FLSDQLVVVFGTPMFV-G 173 + + FD+D+FK +ND +GH VGD V+A ++D L+ P V G Sbjct: 236 AGAERHLAVAPAALLLFDLDHFKAVNDRYGHSVGDAVLAAFCHVADPLL----PPGAVFG 291 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEP 232 R+GGEEFA E+ A +A D+R I ++ P + I +S G+A Sbjct: 292 RMGGEEFACLLPRLDERAAMRIAEDVRAAI--ARFAHPDYPELVIRVSVGVAAESQIGGS 349 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ RAD ALY AK +GR++V+ + Sbjct: 350 LDYLLRRADDALYQAKDAGRDQVIAAGE 377 >gi|152994924|ref|YP_001339759.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150835848|gb|ABR69824.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 323 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 2/130 (1%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 E+ ++ DID+FK +ND FGH VGD V+ +++ L + V R+GGEEF Sbjct: 185 QEETRLLIIDIDHFKSVNDEFGHDVGDSVLIEMTELLHYCINSNQ-VYRIGGEEFLIVLN 243 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 ++ +A A +RK +ENS I + +I IT+S GIA+ + + AD+ LY Sbjct: 244 NYTQTQAFDFAETIRKTVENS-IFRTHQQNIKITVSIGIAQLKKGQSFREFLRVADKNLY 302 Query: 246 VAKKSGRNRV 255 AK GRN V Sbjct: 303 TAKNEGRNLV 312 >gi|16329397|ref|NP_440125.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] gi|1651878|dbj|BAA16805.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] Length = 452 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 11/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL + ++ L+ ID L+ + N F L ++ LS++ DIDYFK ND Sbjct: 276 ELQAANQQLQLLANIDGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYND 335 Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD + +++ LV + V R GGEEF ++ Q+A +A ++ + I Sbjct: 336 LYGHQKGDDCLQKVANTLVDIAKRITDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAI 395 Query: 204 ENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + S S ++TIS G++ ++ I II ADQALY AK GRNR + Sbjct: 396 AALAIPHEGSSVSKYVTISIGVSSIIPMPEDTIERIISEADQALYSAKSQGRNRAIA 452 >gi|330938536|gb|EGH42121.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 424 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 198 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 247 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 248 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 307 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPSIHI 218 EEFA S E +R+ I + +I + + S+ + Sbjct: 308 EEFAIVFAAKSIDECMPHLEAIRETIASYEIQLRNKNDRPQDDQQGRQRRSGAQAGSVSV 367 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 368 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 414 >gi|257485998|ref|ZP_05640039.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330986057|gb|EGH84160.1| GGDEF domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010362|gb|EGH90418.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 527 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 15/172 (8%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A ++ + I + QI + P + Sbjct: 396 RVVEQCIRRPGDVAARYGGEEIAVVLPGTDESSARQVAENILQAIRDEQIEHPASPFGIV 455 Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A +R + ++I AD+ALY AK GRNRV S+I +T Sbjct: 456 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 505 >gi|253689810|ref|YP_003019000.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756388|gb|ACT14464.1| diguanylate cyclase with PAS/PAC and GAF sensors [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 608 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+GL N S+F ++ +K + DID FK IND +GH GD V+ Sbjct: 450 DFLTGLPNRSSFFEQANAFFLHNQQNQQTDKSCLAIIDIDLFKNINDQYGHLAGDAVLKE 509 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L+ + + V RLGGEEF S Q A + +RK IE + ++H Sbjct: 510 LAVLMRMSLRQEDLVARLGGEEFIILLKDISYQTAMMTIERIRKAIEQHTLEYDR-QTLH 568 Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 TISAGIA R + I AD LY AK+ GRN Sbjct: 569 FTISAGIAAYRSDLASVEDWIQLADANLYAAKRQGRN 605 >gi|226947588|ref|YP_002802679.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium botulinum A2 str. Kyoto] gi|226842632|gb|ACO85298.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium botulinum A2 str. Kyoto] Length = 843 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 14/162 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +I L+ D L+GL N I ++ NEK +++F D+D+FK IND GH VGD Sbjct: 418 KILGLAYYDSLTGLSNRKKIIETINKTINNYENEKFAVLFIDLDHFKSINDTLGHDVGDY 477 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209 V+ +S + ++ +GRLGG+EF ++ +E+ A + L I+ + + Sbjct: 478 VLEKVSARFKMLLSPKHKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 537 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + G SI I+I + ST++ AD A+Y AKK+G Sbjct: 538 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNG 574 >gi|170747668|ref|YP_001753928.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831] gi|170654190|gb|ACB23245.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831] Length = 510 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 104/229 (45%), Gaps = 14/229 (6%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN 98 I T+ I N+ L + + + ++ + L + +TI+L L + G L+ Sbjct: 266 IGTLPLILNVALSTKDVEADWAAKAAIIGGIVLALCGLTIALSL--LFGRELRRREALRA 323 Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ LSR D L+GL N F +L + LS++ D D+FK+ ND +GHPVG Sbjct: 324 EMAALSRTDVLTGLPNRRCFEDALRRNLDAARRDGQPLSLLIVDADHFKRFNDRYGHPVG 383 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D ++ L+ L P V R+GGEEF + E A +A+ + + + Sbjct: 384 DAILQGLARCLAASVHRPQDLVSRIGGEEFTLLLPETDEAGALRVADTVHAEVAKLTVES 443 Query: 211 SSGPSIHITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + +T+S G+A P+ AD ALY AK GRN+ Sbjct: 444 AGLGAGTVTVSIGLASVRPGSDRSAPLPDPYRLADGALYEAKNGGRNQT 492 >gi|114049198|ref|YP_739748.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113890640|gb|ABI44691.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 571 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 12/238 (5%) Query: 25 HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84 H YF + S+F+ F +FY G F L V + +++ ++ ++L++ Y Sbjct: 324 HPIAKYFLLGHSLFVG---FSGLAVMFYKGRAEFNYLSSHGV-GVGIMLEALVLALIIAY 379 Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 +L+E+ S + + D L+ L N F + + ++++ DID Sbjct: 380 -RIRLLEEIKASQEELKYQAATDSLTQLFNRGHFHKEAQRVYTQASIAQQPMAVIICDID 438 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK++ND +GH +GD+VI ++ L V R GGEEF S EA + A Sbjct: 439 LFKRVNDKYGHLMGDRVIIDIATTLKQHARKCDLVARYGGEEFIMLLHNVSLTEAHLCAE 498 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R + + +T+S G+A P+ I AD ALY AK GRN V Sbjct: 499 RIRSAVAALNFTAETQEVFTVTLSLGVATVDFDHPLEHAIKLADDALYCAKHQGRNNV 556 >gi|190895432|ref|YP_001985724.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190699377|gb|ACE93461.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 298 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 82/171 (47%), Gaps = 11/171 (6%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144 I S EL NR ++R+D + H GS + FDID FKQIND Sbjct: 136 IKASYTDELTGVANRRFVMARVDDMLAAARHG------GSG----CLAVFDIDKFKQIND 185 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH GD V+ + ++ GR+GGEEF +S ++A + + +I Sbjct: 186 RFGHHAGDLVLRDFAHRIHQNVRRNDCFGRVGGEEFLLVMPSTSPEDALAMVERMLTVIR 245 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S+ ++ P T SAGIA + S + RADQALY AK SGR+RV Sbjct: 246 FSRP-LADSPDFSYTCSAGIAASLPIDSASELYRRADQALYDAKMSGRDRV 295 >gi|187920568|ref|YP_001889600.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans PsJN] gi|187719006|gb|ACD20229.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans PsJN] Length = 689 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 15/167 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISS-----LGSYNEK--LSIVFFDIDYFKQINDNFGHPV 150 +I +L+ +D L+GL N S L + ++ +I+F D+D FK IND+ GH V Sbjct: 253 GQIVRLATLDTLTGLPNRSTLTDRIERAILSARRQRTLFAILFMDLDGFKTINDSLGHSV 312 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQI 208 GD+V+ + +L+ V RLGG+EF A LGS E +A+ ++E ++ Sbjct: 313 GDQVLTAFAQRLLQCVRETDTVARLGGDEFVVLAENLGSREDASALAEG----VLERMRL 368 Query: 209 NI-SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 + + + + S GIA H + + T++ AD A+Y AK++GR+ Sbjct: 369 GVWTDSQPLQVMPSIGIALYPHDGDSVETLLKHADAAMYEAKRAGRS 415 >gi|95928296|ref|ZP_01311044.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95135567|gb|EAT17218.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 370 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 15/167 (8%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I++L+ D L+G N F I Y + LS++ DID+FK IND++GH GD Sbjct: 198 IAELAVRDSLTGSFNRGYFNETFPGAIRRAQRYQQSLSLIMCDIDHFKLINDHYGHQTGD 257 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 +VI ++ L + ++ R GGEEF ++ + A ++A +R+ I + +I Sbjct: 258 RVIKSVAQGLAQSLRQGVDWLARYGGEEFVIVLPETNLEGALVVAERMRRSIADQEIACD 317 Query: 212 SGPSIHITISAGIAERCHKEPISTI-----IYRADQALYVAKKSGRN 253 SI +T S G+A C E S + I AD+ LY AKK GRN Sbjct: 318 P-QSIRLTASFGVAG-CDPEHASMLTGNGMIAAADRCLYQAKKEGRN 362 >gi|241204072|ref|YP_002975168.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857962|gb|ACS55629.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 427 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 12/173 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 S + L+ D L+G+LN + E+ ++++ FD+D+FK++ND FGH Sbjct: 218 SERHLRALTLTDSLTGVLNRRGLLGYFDGIQERAHNEQRQVAVILFDLDHFKRVNDRFGH 277 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ + +F GR+GGEEFAA A + + EA +A +R E ++ Sbjct: 278 QSGDAVLTAFARMARQYIPNNIF-GRMGGEEFAAFAAVADQTEAEAIAEAIRT--EFCRL 334 Query: 209 NISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259 +S+G +I +T+S GIA E I +I AD+ALY AK +GRN V F Sbjct: 335 PVSTGEAIVPVTVSIGIALASSIEANIDKLISAADRALYAAKAAGRNCTVTFG 387 >gi|170722183|ref|YP_001749871.1| diguanylate cyclase [Pseudomonas putida W619] gi|169760186|gb|ACA73502.1| diguanylate cyclase [Pseudomonas putida W619] Length = 377 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 11/191 (5%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQL-SRIDCLSGLLNHSAFIS-SLGSY----- 125 +++ T SL ++ LK +R++ + S D L+GL N AF +L + Sbjct: 180 VVNATQSLSSALVTAWRLKHEMERAHRLAIVASCTDELTGLNNRRAFFDCALAQHTLCKE 239 Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + ++++ D+D+FKQIND GH GD+V+ + + GRLGGEEFA Sbjct: 240 GHTYVAVLMLDVDHFKQINDTAGHAAGDQVLKRIGTAISASLRDNDIAGRLGGEEFAILL 299 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + A+ A LR +I +++N+ + ++ +I A+ E + ++ AD+A+ Sbjct: 300 PDTPLVTASEFAERLRALI--AKLNVDTQYAVTASIGLAFAKAPASE-LDALLSSADKAM 356 Query: 245 YVAKKSGRNRV 255 Y AK SGRNRV Sbjct: 357 YRAKASGRNRV 367 >gi|169343600|ref|ZP_02864599.1| GGDEF domain protein [Clostridium perfringens C str. JGS1495] gi|169298160|gb|EDS80250.1| GGDEF domain protein [Clostridium perfringens C str. JGS1495] Length = 299 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 4/129 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188 +++ DID FK++ND +GH VGDK++ + L + ++GR GGEEF ++ Sbjct: 172 TVIMADIDSFKKVNDTYGHLVGDKILRDFAKALNNNIRENSDWIGRYGGEEFIIVLNNTN 231 Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247 + +A LRKIIE +++ G S+ IT S G+ E KE I AD+ LY+A Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289 Query: 248 KKSGRNRVV 256 K +GRN+ V Sbjct: 290 KMTGRNKTV 298 >gi|153937944|ref|YP_001392710.1| putative diguanylate cyclase [Clostridium botulinum F str. Langeland] gi|152933840|gb|ABS39338.1| putative diguanylate cyclase [Clostridium botulinum F str. Langeland] gi|295320691|gb|ADG01069.1| putative diguanylate cyclase [Clostridium botulinum F str. 230613] Length = 437 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 12/173 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144 E + + N+I +LS I L+ LN +F+ L N++ +SIVF D+DYFK+ ND Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGSFMEKLKDEFDDSKKNKRHISIVFIDVDYFKEYND 314 Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 N+GH GDKV+ + ++ V VGR GG+EF E ++A ++ K I Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAVEISKEI 374 Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +I S S + T+S G+A K E I +I AD+ALY +K++GRN Sbjct: 375 NKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYKSKENGRN 427 >gi|85374283|ref|YP_458345.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594] gi|84787366|gb|ABC63548.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594] Length = 909 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 13/185 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138 SG+ L E S S+L+ D L+GL N SL N + ++ D+D Sbjct: 357 SGTDLTEKRRSQEHASRLAHFDSLTGLANRHQMSQSLEKILASPKVANRECAVFLLDLDR 416 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE--AAILA 196 FK +ND GHP GD ++ ++++L G VGRLGG+EF G ++ + + A Sbjct: 417 FKHVNDTLGHPAGDALLKQVAERLESTVGNMGRVGRLGGDEFKVILPGRVPKDKLSYLAA 476 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R + + I G + I +S GIA + E +I AD ALY AK GR R Sbjct: 477 GIIRSLSQPYSI---EGQRVVIGVSIGIAISPENGESSEDVIRNADLALYAAKDGGRGRF 533 Query: 256 VCFSD 260 +S+ Sbjct: 534 HFYSN 538 >gi|24373731|ref|NP_717774.1| cyclic nucleotide phosphodiesterase, putative [Shewanella oneidensis MR-1] gi|24348104|gb|AAN55218.1|AE015659_12 cyclic nucleotide phosphodiesterase, putative [Shewanella oneidensis MR-1] Length = 320 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 14/176 (7%) Query: 101 SQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +L+ D L+ L N AF +S + L+ + FDID FK +ND +GH GD + Sbjct: 140 ERLANTDELTKLYNRRAFFNLGLSIAQQSGQALAFIMFDIDRFKHVNDRWGHTTGDAALI 199 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + +GRLGGEEF ++A LA +R E + + +G I Sbjct: 200 HIAKLTQAILKPVDILGRLGGEEFGILLPDLHHEQACQLAESIRCRFEEQPLAL-NGQII 258 Query: 217 HITISAGIA---------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 T S GIA E+ + + T+ ADQA+ AK++GRN+V +++ N Sbjct: 259 KCTASFGIASITIPVIHSEKEAQNLLETLFNSADQAMMQAKRNGRNQVCSATELAN 314 >gi|13472300|ref|NP_103867.1| hypothetical protein mlr2546 [Mesorhizobium loti MAFF303099] gi|14023045|dbj|BAB49653.1| mlr2546 [Mesorhizobium loti MAFF303099] Length = 518 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 12/162 (7%) Query: 107 DCLSGLLNHSAFIS----SLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D ++G + F+ SLG+ ++ +++ D+D+FKQ+ND FGH GD + L Sbjct: 97 DAMTGAMTRRYFLEALRDSLGTMRDRREATLLLIDVDHFKQLNDTFGHQFGDLALVHLVK 156 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHIT 219 VF M VGRLGG+EF + A + D+R++++ + S G +I ++ Sbjct: 157 TSERVFADGM-VGRLGGDEFGVII---PHGDLAAINKDIRQLLDTMRAGKSHEGKTIPLS 212 Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 IS G+A H + ++ AD ALY +K +GR RV F + Sbjct: 213 ISVGVALAPAHASNTAELMLVADLALYESKAAGRGRVTVFDE 254 >gi|260777767|ref|ZP_05886660.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605780|gb|EEX32065.1| GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450] Length = 480 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 25/177 (14%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 +EL + + LS D L+ L N F+ E ++++ FDID FK INDNFG Sbjct: 300 RELAKANQELRVLSETDPLTELSNRRHFVEEFQQRLVVPESIAVMIFDIDDFKVINDNFG 359 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-----RKI 202 H VGD VI ++D + V GR+GGEEFA G S + +A+ + + Sbjct: 360 HEVGDTVIRQVADAVRTVIKKDHLFGRIGGEEFALVVSGHSLGQVTTIAHKVCHSVRSVV 419 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 IE+ I++S G C P+++ + AD +Y AK G++R V Sbjct: 420 IEDKAISVSLG--------------CAYYPLTSFNITLSDADHLMYQAKSLGKDRAV 462 >gi|229491943|ref|ZP_04385763.1| sensory box/ggdef family protein [Rhodococcus erythropolis SK121] gi|229321156|gb|EEN86957.1| sensory box/ggdef family protein [Rhodococcus erythropolis SK121] Length = 734 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 17/186 (9%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139 GS + E+ + + I ++ R+D L+G+ N +F + L + +L++ D+D F Sbjct: 299 GSDVTEVKLQSDEIVRMGRVDALTGMPNRHSFWTELERLLCDPYTSEGRLALAMLDLDNF 358 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILAN 197 K +ND GH VGD V+ ++D+L G RLGG+EFA +G S Q +L Sbjct: 359 KSVNDTLGHTVGDAVLREVADRLSEAGGMSQLFARLGGDEFAILFTDVGDSSQVRTLLG- 417 Query: 198 DLRKIIENSQINIS-SGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + IE Q I+ +G + I S G + + ++ AD AL+ AK+SGR Sbjct: 418 ---RYIETLQEPITVAGTRLEIGCSIGYYLPDELQSSA-DEMMGAADLALFAAKESGRGG 473 Query: 255 VVCFSD 260 V + D Sbjct: 474 VREYRD 479 >gi|254507842|ref|ZP_05119972.1| response regulator [Vibrio parahaemolyticus 16] gi|219549215|gb|EED26210.1| response regulator [Vibrio parahaemolyticus 16] Length = 405 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 7/156 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +++ D L+GL N + + S EK SI DID+FK++ND +GH GD + +++ Sbjct: 253 RMANQDALTGLWNRRFLFNQVCSGCEKRSIAMLDIDHFKKVNDTYGHDGGDAALVTVANI 312 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L + F + V R GGEEF + +++ A L +R+ ++ + I + I++TIS Sbjct: 313 LKIYFPDDV-VARFGGEEFCIQSCSDNKEFIARLEQ-MRQRLQKTPIK-HNQQEINVTIS 369 Query: 222 AGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 G+ C E ++ I AD LYVAK+ GRN++V Sbjct: 370 IGV---CSLEASLNEQIKIADDRLYVAKERGRNQIV 402 >gi|254292004|ref|ZP_04962783.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|150422081|gb|EDN14049.1| GGDEF family protein [Vibrio cholerae AM-19226] Length = 443 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 34/175 (19%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 ++ +++ D L+G +N L +S++F DIDYFKQ+ND +GH +G Sbjct: 269 KVVEMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLG 328 Query: 152 DKVIAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR- 200 D ++ SD+LV R GGEEF ++ ++A LA LR Sbjct: 329 DDLLREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRA 378 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 KI ++S I+ + IT S GIA+ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 379 KIADHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427 >gi|86359229|ref|YP_471121.1| putative sensory box/GGDEF family protein (nitrogen fixation positive activator protein-like) [Rhizobium etli CFN 42] gi|86283331|gb|ABC92394.1| putative sensory box/GGDEF family protein (nitrogen fixation positive activator protein-like) [Rhizobium etli CFN 42] Length = 737 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 22/206 (10%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FI 119 E L LV + + L +G+++G LK N + + D LSGL N F+ Sbjct: 269 EALGLVGMFFMVLLAIGWLAGRRLK---AEENSAREEALRDRLSGLSNRDGLGLAVDRFV 325 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 + + +++ D+D FK++ND++GH GD++I ++ L V+ + R+GG+E Sbjct: 326 AEARQSKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRAVAAGLKVLIPQGAVLARIGGDE 385 Query: 180 FAAAALGSSEQEAAILAND-----LRKIIENSQINISSGPSIHITIS-AGIAERCHKEPI 233 FA A L E AA+ ++ L + +E + + G SI I +S AG +R Sbjct: 386 FAIAFLSDGENAAALQLSEQILDFLVEPLEIGRRVVVVGASIGIAMSPAGAIDR------ 439 Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259 ++ R+D A+Y AK++GR R+ + Sbjct: 440 EELVRRSDLAMYKAKEAGRARMTLYD 465 >gi|51891704|ref|YP_074395.1| sensory box GGDEF domain-containing protein [Symbiobacterium thermophilum IAM 14863] gi|51855393|dbj|BAD39551.1| putative sensory box/GGDEF domain protein [Symbiobacterium thermophilum IAM 14863] Length = 375 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 36/191 (18%) Query: 92 ELFISYNRISQLSR-------IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 EL Y R Q++R D L G+ N I + +++ FD+D Sbjct: 198 ELQRQYARTRQIARSMASLAHTDPLLGIPNRRQMELLIEQEIRCAEEGGQPATMIMFDVD 257 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FKQIND +GH GD + ++ + VGR GG+EF I+ Sbjct: 258 RFKQINDMYGHEAGDAALRAVATTVRQALRATDHVGRWGGDEF-------------IILV 304 Query: 198 DLRKIIENSQINISSGPSIH---------ITISAGIAERCHKEPISTIIYRADQALYVAK 248 + + + Q+ G ++H +TIS G+A + +S+ + RAD A+Y AK Sbjct: 305 RVNETAQAYQLAQRVGEAVHQKLSEHFPIVTISLGVAPYRPGDTVSSWVSRADAAMYRAK 364 Query: 249 KSGRNRVVCFS 259 +SGRNRVV S Sbjct: 365 ESGRNRVVVGS 375 >gi|87122113|ref|ZP_01077997.1| GGDEF family protein [Marinomonas sp. MED121] gi|86162660|gb|EAQ63941.1| GGDEF family protein [Marinomonas sp. MED121] Length = 714 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 75/148 (50%), Gaps = 5/148 (3%) Query: 113 LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 L H+ F +Y +++ FD+DYFK+ ND FGH GD V+ + + L + Sbjct: 562 LTHTRFKEEGQNY----AVLLFDVDYFKRYNDLFGHQEGDNVLINVVNCLKDNLNKSEKI 617 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKE 231 R GGEEF SS +A LA + IEN QI + +T+S G AE R Sbjct: 618 YRYGGEEFICVLPESSLNKAITLAQKMVLSIENLQIKHAKSHYGVVTVSVGCAEVRADDM 677 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259 +I R+D+ALYVAK GRN++ S Sbjct: 678 SWEQLISRSDKALYVAKAKGRNQISADS 705 >gi|15598897|ref|NP_252391.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107103216|ref|ZP_01367134.1| hypothetical protein PaerPA_01004285 [Pseudomonas aeruginosa PACS2] gi|218890020|ref|YP_002438884.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254236612|ref|ZP_04929935.1| hypothetical protein PACG_02615 [Pseudomonas aeruginosa C3719] gi|254242396|ref|ZP_04935718.1| hypothetical protein PA2G_03141 [Pseudomonas aeruginosa 2192] gi|9949866|gb|AAG07089.1|AE004789_9 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|126168543|gb|EAZ54054.1| hypothetical protein PACG_02615 [Pseudomonas aeruginosa C3719] gi|126195774|gb|EAZ59837.1| hypothetical protein PA2G_03141 [Pseudomonas aeruginosa 2192] gi|218770243|emb|CAW26008.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 347 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 12/168 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK ND FGH GD Sbjct: 167 LQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGD 226 Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + + R GGEEFA G+S A +LA +R+ +E+ QI + Sbjct: 227 EALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHD 286 Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P H+T+S G++ + +I ADQALY AK +GRN+V Sbjct: 287 QPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 334 >gi|331008390|gb|EGH88446.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 533 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 111/255 (43%), Gaps = 29/255 (11%) Query: 23 SPHT-----FMIYFSIFFSIFIATVI--FIANIFLFYIGLTPFYGLEYILVENLSLVIIS 75 SPH + + + FSIF+ + F F Y P Y ++ E V+ S Sbjct: 6 SPHMVSKYLYTLLWFYLFSIFLVAIAWEFKLESFAMYAMNLP-YDQDFEDAERWRFVLTS 64 Query: 76 ITISLLLGYISGSILKELFI----SYNRI-------SQLSRIDCLSGLLNHSAF----IS 120 +LL + +LK L SYN + L+R D LSGLLN F ++ Sbjct: 65 TGFALLSMVVPFILLKRLMQRLQDSYNDLLKSQALSDSLARHDPLSGLLNRRVFQEQLVA 124 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179 L + + ++ D+D FK IND GH VGD I +++ L G V RLGG+E Sbjct: 125 RLEQASSQTAVFLIDLDKFKLINDTHGHAVGDAAICAVAESLREATAGWQASVARLGGDE 184 Query: 180 FAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTII 237 F A G Q E A LA + I S ++ P + ++ + GIA T++ Sbjct: 185 FGLAVSGDFTQVELATLAESVLAKIAASSADL---PRLALSATLGIAISPLDGSDADTLL 241 Query: 238 YRADQALYVAKKSGR 252 AD A+Y K GR Sbjct: 242 QHADSAMYRGKNGGR 256 >gi|312880831|ref|ZP_07740631.1| response regulator receiver modulated diguanylate cyclase [Aminomonas paucivorans DSM 12260] gi|310784122|gb|EFQ24520.1| response regulator receiver modulated diguanylate cyclase [Aminomonas paucivorans DSM 12260] Length = 998 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 79/157 (50%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D LSGLLN A + + E +S+ D+D FK IND +GH GD+V+ + Sbjct: 842 DPLSGLLNRRALLEQEEAELTRSRRTGEPVSVAMMDLDRFKAINDRYGHLAGDEVLREAA 901 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + GR GGEEF G+S EAA + LR I ++ + G S+ T Sbjct: 902 RLIQCNLREYDLCGRYGGEEFLLVFPGASAFEAAQVCERLRFRIADAPLEY-QGQSLAFT 960 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+AE + + AD+ALY AK++GR+RVV Sbjct: 961 ASFGVAEYDRIGSLDALNAAADEALYRAKEAGRDRVV 997 >gi|241767276|ref|ZP_04765010.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Acidovorax delafieldii 2AN] gi|241362044|gb|EER58185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Acidovorax delafieldii 2AN] Length = 654 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 18/170 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 E + RI QL+ D L+GL N F ++ L + +++F D+D FKQ+ND Sbjct: 295 ERDTARRRIHQLAFFDTLTGLPNRVQFRSNAEGALAHLQRSGDAGALLFVDLDRFKQVND 354 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD ++ ++ +LV VGRL G+EF A GS++ EA A L I Sbjct: 355 TQGHAAGDALLEAVARRLVQACRRQDLVGRLAGDEFVAFLPGSTQDEALTAAQHLLDTIA 414 Query: 205 -----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 + QI + + SI I + G I T++ ADQA+Y AKK Sbjct: 415 APLDIHGQIQVPTA-SIGIAMYPGDGSD-----IDTLLSHADQAMYQAKK 458 >gi|193222442|emb|CAL63411.2| Conserved hypothetical protein; putative GGDEF family protein [Herminiimonas arsenicoxydans] Length = 359 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 91/190 (47%), Gaps = 29/190 (15%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF------------ISSLGSYNEKLS---------I 131 ++ +Y + S D L+GLLN F S NE+ + Sbjct: 150 VYRNYQSLLDYSERDSLTGLLNRKTFDEKFARMVNAKPADSAPHGNEERRHHTDVKSQWL 209 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID+FK++ND FGH GD+V+ +++ L F V R GGEEF ++ + Sbjct: 210 AVIDIDHFKRVNDVFGHLYGDEVLILVANVLRASFRAQDRVFRFGGEEFVILLRSTTLAD 269 Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 A ++ R+ IE+ P + IT+S G A H+ P+ TI+ ADQALY AK Sbjct: 270 AQMVFERFRENIEHYAF-----PQVGKITVSIGFASIGHETPV-TILGHADQALYYAKDH 323 Query: 251 GRNRVVCFSD 260 GRN+ VC+ D Sbjct: 324 GRNQ-VCYYD 332 >gi|193222304|emb|CAL61559.2| conserved hypothetical protein; putative membrane protein; putative PAS/PAC, EAL, GGDEF domains [Herminiimonas arsenicoxydans] Length = 869 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 18/180 (10%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDID 137 I+ + EL I Y + D L+ L N +++L + E L+++F D+D Sbjct: 424 ITKRKMTELQIEYQAMH-----DMLTDLPNRRYLVNTLATAMETSRQQQSSLTMLFCDLD 478 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK +ND GH GD+ + +S ++V V FV R GG EF SS E++I A Sbjct: 479 FFKSVNDTHGHDFGDQCLLEISKRIVAVLPESDFVARFGGNEFVILT-NSSLAESSIKAK 537 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255 + + + S+ + ++ I +S GIA+ H+ P + +I AD A+Y AK+ GRNR Sbjct: 538 AIARAV--SERLVFENVAVKIQVSIGIAQLSPDHQVP-ADLIREADAAMYQAKERGRNRT 594 >gi|114799344|ref|YP_759497.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444] gi|114739518|gb|ABI77643.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444] Length = 327 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 13/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138 S S++ L + + S D L+ + N AF +L +E L + D+D+ Sbjct: 143 SQSLISTLSEQLDEVRTQSLRDPLTAIPNRRAFDKTLEEAMDHAARTHEPLCVAMADLDH 202 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA----AI 194 FK +ND FGHP GD V+ + + P V R GGEEFA GS A Sbjct: 203 FKALNDTFGHPAGDVVLQNFARLISGSANEPRLVARYGGEEFAIIFPGSDLMAAYNRLVN 262 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + + L K + ++ ++ GP +T S G+A+ +I +AD +LY AK GRNR Sbjct: 263 IKHTLSKTVHEAEGSV--GPLPAVTASFGVAKYQPGMTARELIQKADASLYDAKAKGRNR 320 Query: 255 VVC 257 V Sbjct: 321 VCA 323 >gi|92112820|ref|YP_572748.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043] gi|91795910|gb|ABE58049.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043] Length = 363 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 15/233 (6%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90 + + S+ I +V +A + L + TP+ L + L ++ + + + L+LG I + Sbjct: 128 YKVAMSVSIGSVA-VATLTLAPLA-TPWMAGGAALHQELQIINL-VAVFLVLGLI----M 180 Query: 91 KELFISYNRISQLSRIDC----LSGLLNHSAFISS---LGSYNEKLSIVFFDIDYFKQIN 143 L + R R D L+ +LN A L +++ D D+FKQIN Sbjct: 181 WRLHVITERCEHHFRRDATHDYLTTVLNRRAIFHEADMLWHQQRHFTLLLLDADHFKQIN 240 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD+V+ L++ L +GR+GGEEF S +E +A +R+ + Sbjct: 241 DEYGHTAGDEVLRHLANTLRGALREHDRLGRVGGEEFLIVLPESEREEVLAVAAHIRQCL 300 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + + ++ +T S G+A +S +I AD+ LY AK +GR+++V Sbjct: 301 SDRPCQLDT-LTLPVTFSMGLAASDEAALLSEVIDLADRRLYRAKSAGRDQLV 352 >gi|70729435|ref|YP_259173.1| sensory box protein [Pseudomonas fluorescens Pf-5] gi|68343734|gb|AAY91340.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas fluorescens Pf-5] Length = 1114 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 19/203 (9%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 + ++ T LL+ S+LK + +I L+ D L+ L N + I+ L Sbjct: 654 ITLNETPCLLMTARDVSLLKN---AQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKR 710 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 +N + +++F D+D+FK IND+ GHPVGD V+ ++ +L V RLGG+EF Sbjct: 711 HNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFVVLL 770 Query: 185 LG------SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237 G ++ LA+ LR+++ S+ G + +T S G+A H + ++ Sbjct: 771 SGLEGTRNEVSEQVRQLADTLRELL--SEPMFLDGQRLQVTPSIGVALIPDHGSTPTDLL 828 Query: 238 YRADQALYVAKKSGRNRVVCFSD 260 RAD ALY AK SGRN F + Sbjct: 829 KRADIALYRAKDSGRNTTQMFHN 851 >gi|311696654|gb|ADP99527.1| response regulator receiver domain protein (CheY) [marine bacterium HP15] Length = 598 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 90/188 (47%), Gaps = 17/188 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL + ++ +S D L+ + N F L + LS++ DID+FK++ND Sbjct: 410 ELERANEQLRAISLTDGLTHVANRRRFDEKLQDEWKRAQRHGHPLSLLLLDIDHFKRVND 469 Query: 145 NFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 GH VGD +A L V G + R GGEEF + E+ A +A +R+ Sbjct: 470 ELGHLVGDDCLTEVAALCAAEVQRSGD--LLARYGGEEFIILLPATPEEGAVRVAERVRQ 527 Query: 202 IIENSQINISSG-PSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + S + S + +TIS G+A EP +I +AD+ALY AK+SGRNRV+ Sbjct: 528 AVARSPVYSSERVAPVSLTISVGVACVVPDPDMEP-QELIRQADEALYSAKESGRNRVMV 586 Query: 258 FSDIENNT 265 D T Sbjct: 587 ARDFRAAT 594 >gi|315269441|gb|ADT96294.1| diguanylate cyclase with GAF sensor [Shewanella baltica OS678] Length = 594 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 10/177 (5%) Query: 89 ILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQIND 144 +L++ +S N ++ +++ D L+GL N F L + + + D+DYFK ND Sbjct: 413 VLQQALVSANTQLKEMAETDELTGLANRRPFTERLETVLQADIPAGLFMLDVDYFKSYND 472 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 +GH GD V+ ++D L P + R+GGEEFA + + +A L + Sbjct: 473 TYGHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQLCYL 532 Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E I + P +TIS G ++ ++ ++ RAD LY AK GRNRV Sbjct: 533 VEQLNIPHQASPLAVVTISIGSVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRV 589 >gi|292493800|ref|YP_003529239.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291582395|gb|ADE16852.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 640 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 9/174 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQI 142 L EL ++ R+ Q++ D L+ L N + + Y LS + D+D FKQI Sbjct: 458 LAELAVANRRLEQMAMTDSLTALPNRRYAMERMEQAWAEYQRNGTPLSCLVVDLDLFKQI 517 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND++GH +GD V+ +++ + V RLGGEEF ++ EA +A LR Sbjct: 518 NDHYGHDIGDGVLREIANVFRSSARSSDVVCRLGGEEFFVICTNTTAAEALQVAERLRHA 577 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255 +++ + G +++IS G+A +YR ADQALY AK+ GR+++ Sbjct: 578 VKSHHWTV-PGFGGNLSISVGLAASLEGMKEWDDLYRLADQALYDAKRKGRDQI 630 >gi|90022538|ref|YP_528365.1| cellulose binding, type IV [Saccharophagus degradans 2-40] gi|89952138|gb|ABD82153.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 443 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 12/183 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 +I K L + + +L++ D L+G+ N +++ + S++ DID+FK Sbjct: 262 NINKLLNLQTQKFEELAKTDMLTGVANRLGVREYLFEGLNNWRNNQSPFSLILIDIDHFK 321 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND GH VGDKV+ ++ V R GGEEF + +A +A +LR Sbjct: 322 LFNDTHGHDVGDKVLKGAAEIFRNSVRNTDLVARWGGEEFIVICPNTDTHQATTVAENLR 381 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +++I + +T S G+A + + + +AD+ALY AK++GRN+VV S Sbjct: 382 TRLASAEI----FNGLKVTASFGVAS-MNTPSLEHLFKQADEALYSAKEAGRNKVVVSST 436 Query: 261 IEN 263 + N Sbjct: 437 LAN 439 >gi|15837588|ref|NP_298276.1| hypothetical protein XF0986 [Xylella fastidiosa 9a5c] gi|9105918|gb|AAF83796.1|AE003936_10 hypothetical protein XF_0986 [Xylella fastidiosa 9a5c] Length = 594 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 20/163 (12%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G L A I LS+ F DID+FK+IND +GH GD + + Sbjct: 435 VDGLTGALTRVAIERRLERDIDDARQMGTPLSVAFIDIDHFKRINDEYGHAAGDACLRQV 494 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214 ++ +GR GG+E A G+ A R++ E +I +SS P Sbjct: 495 VQRVRGWLRASDALGRHGGDELIAILPGADLAAA-------RRVAEGIRIAVSSQPFQFE 547 Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T+S G+A E I ++ RAD LY +K +GR+RV Sbjct: 548 CTRLRCTLSLGVASWLPDESIEALLQRADNGLYASKAAGRDRV 590 >gi|146280177|ref|YP_001170334.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17025] gi|145558418|gb|ABP73029.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides ATCC 17025] Length = 1477 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 11/170 (6%) Query: 98 NRISQLSRIDCLSGLLNH------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +R+ QL+ D L+GL N + + L+++ DID FK +ND H G Sbjct: 1007 DRLRQLADEDPLTGLANRRALSAALEARLAAAAGPAPLALIMLDIDNFKSVNDTMRHEAG 1066 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++++L G + RLGG+EF A G + A +LA LR I I I Sbjct: 1067 DRVLCIVAERLRACAGREDLLARLGGDEFMLLASGLDREAAVVLAERLRDAIARP-IRID 1125 Query: 212 SGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259 + P I +T SAG+A C + + ++ AD AL+ AK++GRNR + S Sbjct: 1126 TQP-IRLTASAGVA-LCPDQGTVMPLLMTGADIALHAAKRAGRNRTILLS 1173 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 7/160 (4%) Query: 102 QLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +L+R D L+GL N A + + + + DID+FKQIND FGH GD+V+ Sbjct: 379 RLARSDPLTGLGNRRALDLVFEAAQPEHSSIGLALLDIDHFKQINDRFGHSAGDRVLRRF 438 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGPSIH 217 ++ + V R+GGEEF G A L + ++ + + + Sbjct: 439 AEAVTEVLPEGTHAFRVGGEEFLILCPGFDMAAMAGLVGQVAHQVQQKPPLRVQDHSP-- 496 Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +T SAGIA R + + RAD LY AK+SGRNR + Sbjct: 497 LTFSAGIAVRPEDGSSLDQLYARADACLYEAKRSGRNRFI 536 >gi|264678043|ref|YP_003277950.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262208556|gb|ACY32654.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 621 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 10/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QLS D L+GL+N AF ++ + L+++ FD+D+FK+IND GH GD Sbjct: 454 LRQLSHRDHLTGLMNRRAFDDQAPAQLAQAERHRWPLALMLFDLDHFKRINDQHGHETGD 513 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ + + R GGEEF A ++ A LA LR+ ++ ++ Sbjct: 514 QLLQHAAQLAQAQLRRGDLLARYGGEEFIALLPDCDDKAALALAERLRQALQQP-LHRPD 572 Query: 213 GPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255 G ++++ S G+A + + + + RAD ALY AK GRN+V Sbjct: 573 GSMLNLSASFGLAVQPAGLQSSLPELFTRADTALYAAKAKGRNQV 617 >gi|241206386|ref|YP_002977482.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860276|gb|ACS57943.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 736 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 26/227 (11%) Query: 50 LFYIGLTP----FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105 L +I +P + + ++++ L LV + + L++G+++G LK N + + Sbjct: 248 LVWISRSPGDIGYAQVRPMVIQALGLVGLFFVVLLVIGWLAGRRLK---AEENSAREEAL 304 Query: 106 IDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D LSGL N F+ + +++ D+D FK++ND++GH GD++I + Sbjct: 305 RDRLSGLSNRDGLGLAVDRFVVEARQTKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRAV 364 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LAND----LRKIIENSQINISSG 213 + L V+ + R+GG+EFA A L SE AA+ LA L + +E + + G Sbjct: 365 AAGLAVLIPQGAVLARIGGDEFAIAFLSDSENAAALQLAEQILDFLVEPLEIGRRVVVVG 424 Query: 214 PSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 SI I +S +G R ++ R+D A+Y AK++GR R+ + Sbjct: 425 ASIGIAMSPSGTIGR------EELVRRSDLAMYKAKEAGRARMTLYD 465 >gi|158336184|ref|YP_001517358.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158306425|gb|ABW28042.1| diguanylate cyclase [Acaryochloris marina MBIC11017] Length = 196 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 8/158 (5%) Query: 103 LSRIDCLSGLLNH---SAFISS-LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 LS D L+ L N F+S+ + K ++ FDID+FK+IND +GH GD V+ + Sbjct: 37 LSERDSLTQLYNRRVAEEFLSTCVADAASKSGVILFDIDHFKRINDTYGHQAGDIVLVAV 96 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + V + R GGEEF + +A +LR I + +I P+ + Sbjct: 97 AMRCSQVLRKTDCLARWGGEEFFVVLQHVGAEAIERIAEELRLAIASEEIE----PAGSV 152 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T S G++ + I +++ R D+A+Y AK SGRNRV+ Sbjct: 153 TASFGVSLIKSNDTIGSLLQRVDKAMYAAKTSGRNRVM 190 >gi|149376979|ref|ZP_01894733.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter algicola DG893] gi|149358756|gb|EDM47226.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Marinobacter algicola DG893] Length = 558 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 20/164 (12%) Query: 106 IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ L N A+ L Y LS+ DID+FK++ND++GH GD+V+ + Sbjct: 396 TDVLTQLPNREAWQERLSFEYQRWQRYRHSLSVCVLDIDFFKRVNDSYGHKAGDRVLQLV 455 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------ 212 + L F+ R GGEEF ++ ++ R ++++ + +I+ Sbjct: 456 ARALRERLRATDFIARFGGEEFVILLPETN-------VDNARSVLDSMRGHIAELPFHFR 508 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + +T SAG+AE + + RAD+ALY+AK SGR++V+ Sbjct: 509 GEPVSVTFSAGLAEFDGDDDEDDVFDRADKALYLAKDSGRDQVL 552 >gi|84393501|ref|ZP_00992256.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01] gi|84375854|gb|EAP92746.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01] Length = 634 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 20/174 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSY--NEKLSIVFFDIDYFKQINDNFGHP 149 ++ LS D L+G N F S + Y E+ + DIDYFK+IND FGH Sbjct: 466 KLRNLSEKDALAGCWNRRKFDLELRDECSRVNRYPTREQSCLAILDIDYFKRINDRFGHD 525 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+VI ++ L FV R+GGEEF ++ + A + N LR + N Sbjct: 526 YGDRVIQTVAQVLQRECRETDFVARIGGEEFGVILPHTTTEGAEYVLNRLRIAVSLELDN 585 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIE 262 + +T+S GI + ++ Y+ AD ALY AK +GRN V F D E Sbjct: 586 V-------VTVSGGITNITNDPALN---YKCADLALYEAKAAGRNNVCLFLDKE 629 >gi|109898626|ref|YP_661881.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109700907|gb|ABG40827.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 718 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 36/256 (14%) Query: 36 SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95 ++++A+++ A +F G L L E +++ + ++ + EL Sbjct: 444 NVWLASIVVSAILFALVYGRISQRRLNKRLSEEVAIRTLELSQKNV----------ELQA 493 Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF--------------------FD 135 +Y + +S D L+G+ N + + + EK ++ D Sbjct: 494 AYREMEAISLTDKLTGINNRRFLENHIETDLEKSQRIYDDWRDGKTPTPHQGDIVVFMID 553 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 +D+FK++ND GH VGD+V+ L+ +L VF ++ R GGEEF A +A +L Sbjct: 554 MDHFKRVNDEHGHHVGDEVLRQLTKRLARVFRQSDYLVRWGGEEFVGIARFIDRSDAPLL 613 Query: 196 ANDLRKIIENSQINISSGPSIHITISAG------IAERCHKEPISTIIYRADQALYVAKK 249 A L + S +S H T S G I E + T+I AD LY AKK Sbjct: 614 AQRLLDEVSASPFRLSDKALSHYTCSIGYVCYPPILEHSQQTDWKTLIALADGCLYQAKK 673 Query: 250 SGRNRVVCFSDIENNT 265 SGRN V + T Sbjct: 674 SGRNAWVGIEKVHQPT 689 >gi|47093829|ref|ZP_00231574.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858] gi|226224516|ref|YP_002758623.1| GGDEF domain protein [Listeria monocytogenes Clip81459] gi|254825593|ref|ZP_05230594.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194] gi|254852815|ref|ZP_05242163.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503] gi|254931917|ref|ZP_05265276.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262] gi|254993375|ref|ZP_05275565.1| GGDEF domain protein [Listeria monocytogenes FSL J2-064] gi|300763778|ref|ZP_07073775.1| hypothetical protein LMHG_10682 [Listeria monocytogenes FSL N1-017] gi|47017796|gb|EAL08584.1| GGDEF domain protein [Listeria monocytogenes str. 4b H7858] gi|225876978|emb|CAS05687.1| GGDEF domain protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606143|gb|EEW18751.1| GGDEF domain-containing protein [Listeria monocytogenes FSL R2-503] gi|293583469|gb|EFF95501.1| GGDEF domain-containing protein [Listeria monocytogenes HPB2262] gi|293594836|gb|EFG02597.1| GGDEF domain-containing protein [Listeria monocytogenes FSL J1-194] gi|300515514|gb|EFK42564.1| hypothetical protein LMHG_10682 [Listeria monocytogenes FSL N1-017] gi|332312352|gb|EGJ25447.1| GGDEF domain protein [Listeria monocytogenes str. Scott A] Length = 375 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131 +LL+ Y I K + N +++ + D L+ L N F G + LS+ Sbjct: 184 ALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFGWIFAKSQKRKKSLSL 242 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ 190 DID+FK+IND GH G+ V+A S L F R+GGEEFA + Sbjct: 243 FIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTE 302 Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVA 247 +AA++A+ R+ +E ++ N +SG +T+S G+A + ++ ADQALY A Sbjct: 303 QAALIADFFREEVERAKFPYNPASG---KVTVSIGVASASSNFSTTESLFEAADQALYQA 359 Query: 248 KKSGRNRVVC 257 K++GRN++ Sbjct: 360 KQNGRNQIAV 369 >gi|330898844|gb|EGH30263.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 424 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 198 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 247 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 248 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 307 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPSIHI 218 EEFA S E +R+ I + +I + + S+ + Sbjct: 308 EEFAIVFAAKSIDECMPHLEAIRETIASYEIQLRNKTDRPQDDQQGRQRRSGAQAGSVSV 367 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 368 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 414 >gi|296134149|ref|YP_003641396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola sp. JR] gi|296032727|gb|ADG83495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola potens JR] Length = 692 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 23/209 (11%) Query: 62 EYILVENLSLVIISITISLLLG----YISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 EY++ + ++ +++T ++ G + G + E + ++ +++ D L+GL N + Sbjct: 204 EYLIKNRIKIMELTVTPAIWQGKAVVFGVGKDITERKQAEEKMRRMAYYDSLTGLPNRAF 263 Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 F L S +KL+I+F D+D FK +ND GH VGD+++ ++ +L G Sbjct: 264 FKEKLTAAIIKSRSKKQKLAILFLDLDRFKTVNDIMGHDVGDQLLKDVAKRLKKRVGKGR 323 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-----SGPSIHITISAGIA 225 V RL G+EF S E D+RK E+ N+ +G + H+T S GI Sbjct: 324 VVARLSGDEFIILLPNVSRIE------DVRKFAEDVCENLRKPFTIAGRNFHVTTSIGIT 377 Query: 226 E-RCHKEPISTIIYRADQALYVAKKSGRN 253 + E T++ AD A+Y AK+ G N Sbjct: 378 VFPDNGEDAKTLLKNADIAMYKAKEQGGN 406 >gi|256004528|ref|ZP_05429507.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM 2360] gi|255991533|gb|EEU01636.1| diguanylate cyclase with GAF sensor [Clostridium thermocellum DSM 2360] Length = 401 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 13/167 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y R+ +++ ID L+G+ N F L N LS+ DID+FK+ ND FGH Sbjct: 232 YQRMHEMATIDSLTGIYNRLYFQERLREEFANAKKENYDLSLAIMDIDHFKRFNDTFGHL 291 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDKV+ ++ + + + R GGEEF +S +EA LR I+ + I Sbjct: 292 FGDKVLKHIAHLMKKSLRSGDIIARYGGEEFVILLPRTSVKEAYDKVERLRNIVAKTTIK 351 Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253 +T+S G++ E + E S ++ AD ALY AK+SGRN Sbjct: 352 -DELVEASVTVSFGVSSYPEFANTE--SELLKTADNALYDAKESGRN 395 >gi|172064505|ref|YP_001812156.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] gi|171997022|gb|ACB67940.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] Length = 520 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 17/208 (8%) Query: 68 NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 + ++ I S L LG++ S+L ++ + + L+R D L+GL N +L Sbjct: 303 DRAIPIGSAMAVLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174 + LS++F D+D+FK+ ND GH GD +A ++ + P + R Sbjct: 363 AREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVARCIAGCLHRPADYAAR 422 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--- 231 GGEEF A +A +R I + I +G S +T S G+ C+ E Sbjct: 423 YGGEEFVVVLPNVDTNGAVTIAESIRTGILDLGIRHDTGVSGRLTASIGVTT-CYPERDD 481 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259 I + AD ALY AK+SGRN+VV + Sbjct: 482 SIQAALKLADDALYRAKESGRNQVVVLT 509 >gi|23099659|ref|NP_693125.1| hypothetical protein OB2204 [Oceanobacillus iheyensis HTE831] gi|22777889|dbj|BAC14160.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 591 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 11/161 (6%) Query: 102 QLSR---IDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVI 155 QL++ +D L+GL + ++ ++ + K +++ FDID FK++ND++GH +GD+V+ Sbjct: 434 QLTKALAVDHLTGLYSRKYLEETVTNHMQEGNKGALMLFDIDDFKRVNDSYGHLIGDQVL 493 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++ L V R GGEE A A S +EA ++ + +I+E+ ++ P Sbjct: 494 IQVAEALQEVVADNYIAARWGGEELAIYAKQISLEEAIRISKEACEIVEH-----TTNPR 548 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+ + +TI R+D+ALY AK+ G+N+VV Sbjct: 549 VTISSGVSSWSSDENDTANTIWERSDKALYEAKELGKNKVV 589 >gi|152966894|ref|YP_001362678.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] gi|151361411|gb|ABS04414.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] Length = 485 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 24/173 (13%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQI 142 +L+ + R+ LS D L+GL N + L G+ ++I D+D+FK+ Sbjct: 310 LLEAVGAQAERLRWLSVTDELTGLPNRRSGREQLADRCAPGAAGRPVTIALLDLDHFKRF 369 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSEQEAAILANDL 199 ND GHP GD ++ +D + R GGEEF AA + +E L + Sbjct: 370 NDTRGHPAGDTLLRECADAWRARLPPGGHLARWGGEEFLLLCAAPV----EEVDHLLSGW 425 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 R+ Q T SAG A +EP+ ++ RAD ALY AK +GR Sbjct: 426 RRATPQGQ-----------TFSAGTAGWDGREPVEALVARADAALYEAKSAGR 467 >gi|300310067|ref|YP_003774159.1| diguanylate cyclase GGDEF family protein [Herbaspirillum seropedicae SmR1] gi|300072852|gb|ADJ62251.1| diguanylate cyclase GGDEF family protein [Herbaspirillum seropedicae SmR1] Length = 369 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 15/184 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 ++L + ++ LS D L+G+ N +F +L + L + F D+D+FK N Sbjct: 184 RDLAQANEQLRSLSLTDGLTGIANRRSFDETLEQEWRRSMRHGTPLMLAFIDVDWFKPYN 243 Query: 144 DNFGHPVGDKVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 D++GH GD V+ ++ Q + G V R GGEEFA A + Q A + + Sbjct: 244 DHYGHLAGDAVLRQVAQTLRQSIARVGDT--VARYGGEEFAIIAADTDGQAGADMLRRMC 301 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVC 257 + I + ITISAG+A +P + ++ AD ALY AK GRNRVV Sbjct: 302 DAVHALAIAHAGSAMGRITISAGVASCNPGQPGAGLDGLLQAADAALYRAKMEGRNRVVL 361 Query: 258 FSDI 261 +++ Sbjct: 362 ATEL 365 >gi|223982490|ref|ZP_03632729.1| hypothetical protein HOLDEFILI_00003 [Holdemania filiformis DSM 12042] gi|223965515|gb|EEF69788.1| hypothetical protein HOLDEFILI_00003 [Holdemania filiformis DSM 12042] Length = 342 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 14/168 (8%) Query: 96 SYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 SY ++ +R D L+ LLN I++ + ++ DID+FKQIND FGHP+GD Sbjct: 165 SYRQMEYNARHDSLTQLLNRRWVETQITAAMQEGDPGVMIMLDIDWFKQINDTFGHPLGD 224 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAI--LANDLRKIIEN 205 +V+ L + VF + GR+GG+EF A S+ Q AI A L+++ E Sbjct: 225 QVLETLGQAIQTVFPQAL-SGRIGGDEFILYLKEEQAGSSALQTTAIEKEAERLQRVWE- 282 Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252 ++ G + ++ S G A + E + ADQALY AK +GR Sbjct: 283 -ELRRQKGLTFPVSASLGAARFPQQGERFDQLWLHADQALYQAKAAGR 329 >gi|157736866|ref|YP_001489549.1| GGDEF domain-containing protein [Arcobacter butzleri RM4018] gi|157698720|gb|ABV66880.1| GGDEF domain protein [Arcobacter butzleri RM4018] Length = 415 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 12/211 (5%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118 Y +E + EN ++ +I L + KEL + + + + D L+ LLN A+ Sbjct: 209 YKIENSIKENNKILSNNIEKFKFLNRQIEELQKELIL----VKEEQQFDFLTSLLNRRAY 264 Query: 119 ISSLGSYNEKLSI-------VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 + ++ +I VF DID+FK IND +GH GD ++ + L + Sbjct: 265 QEEVKKVEKQFTIFGSDFAIVFIDIDHFKNINDVYGHACGDAILKNFATILKDLTRKEDI 324 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 + R GGEEF A SE E ++ ++N + I + I SAG+A R Sbjct: 325 ISRYGGEEFVALVNYQSETEIQRYIKRVKTALQN-HVFIYKTQQLQIEFSAGVAFRNKYH 383 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + AD+ LY AK GRN+V+ +IE Sbjct: 384 SFAEAEASADKLLYKAKNKGRNKVIFDDEIE 414 >gi|260775546|ref|ZP_05884443.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608727|gb|EEX34892.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 613 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 87/175 (49%), Gaps = 25/175 (14%) Query: 98 NRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLS--IVFFDIDYFKQINDNF 146 R+ LS D L+ L N HSA +S G Y E+ + DID+FK++ND Sbjct: 446 ERLRILSEKDELTQLWNRRKFELELRHSAKLS--GRYPERHDTCLALLDIDFFKRVNDEL 503 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+VI+ + ++ F+ R+GGEEFA +S +EA N +R Sbjct: 504 GHDEGDRVISRVGAIIIEALRETDFIARIGGEEFAIIMPHTSIEEAEQALNRVR------ 557 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFS 259 I + + IT+S G+ + ST Y+ AD ALY +K GRNRV VC S Sbjct: 558 -IAVEMAADVPITVSVGLTDLTSN---STRCYKCADIALYESKTLGRNRVSVCRS 608 >gi|123443999|ref|YP_001007969.1| cell signalling regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090960|emb|CAL13842.1| Possible regulator involved in cell signalling [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 519 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 104 SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 ++ D ++GL N ++L + S++ DID+FK+IND++GH VGD+VI L+ Sbjct: 366 AQTDPMTGLYNRRGLATTLEPIAQLGQHFSVIALDIDHFKEINDSYGHDVGDEVIKQLAI 425 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHIT 219 Q+ + R GGEEF + A +A LR +E + NI IT Sbjct: 426 QIRESSRDSDILCRSGGEEFLMLLPSTVPDVATPVAKRLRHNVEMMVMANIRP-----IT 480 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS G+A + + RAD+ALY AK+ GRNRV Sbjct: 481 ISLGVAFWNGEGTPEDALKRADEALYRAKQQGRNRV 516 >gi|91226501|ref|ZP_01261250.1| GGDEF family protein [Vibrio alginolyticus 12G01] gi|91189133|gb|EAS75414.1| GGDEF family protein [Vibrio alginolyticus 12G01] Length = 445 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 20/166 (12%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G +N A L + ++ SI++ D+D FK++ND FGH +GD Sbjct: 275 AELAHRDALTGAMNRYAVQHWLEQQSRQVRWGHNTFSILYLDLDKFKKVNDKFGHQMGDD 334 Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 ++ + V+V T ++ R GGEEF ++ ++A A +RK +E+ Sbjct: 335 ILR----EFVMVVATSIYSDDRLVRWGGEEFVVFCPDTNIEQALEKAEMIRKNVEDHL-- 388 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G S +T S GIA+ E +S + RAD+ LY AK++GRNRV Sbjct: 389 WVHGES--LTCSIGIAQ-MQNERVSETMARADEVLYQAKRNGRNRV 431 >gi|27365180|ref|NP_760708.1| Pole remodelling regulatory diguanylate cyclase [Vibrio vulnificus CMCP6] gi|37680766|ref|NP_935375.1| response regulator [Vibrio vulnificus YJ016] gi|27361327|gb|AAO10235.1| Pole remodelling regulatory diguanylate cyclase [Vibrio vulnificus CMCP6] gi|37199515|dbj|BAC95346.1| response regulator [Vibrio vulnificus YJ016] Length = 416 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 5/159 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 N + +++ D L+GL N S + E I DID+FK++ND +GH GD + Sbjct: 261 NELYRMANQDALTGLWNRRYLFSQSCNSCELRHIAMLDIDHFKKVNDTYGHDGGDIALKT 320 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +++ L + F + V R GGEEF + S + L + +R+ +E + I +IH Sbjct: 321 VANILKIYFPGEI-VARFGGEEFCIQSCQSYDDFVTRLEH-MRQRVEKTTI-THKAHNIH 377 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ITIS G+A ++ + I AD LY AK +GRN+VV Sbjct: 378 ITISIGVASL--QDELENQIKEADGYLYQAKANGRNQVV 414 >gi|294624551|ref|ZP_06703228.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601157|gb|EFF45217.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 507 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 18/180 (10%) Query: 96 SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145 S NR+ L+ D L+G+ N ++L E LSI F D+D FK++ND Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDDFKRVNDA 376 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203 GH VGD+V+ + L + T V R GGEEF L ++ +AA++ + L + Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTPADAALMVIERILAETA 435 Query: 204 ENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259 + GP +HIT SAG+A E I ++ AD LY +K GRNRV + Sbjct: 436 RTPMAQLQGGP-LHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494 >gi|238025077|ref|YP_002909309.1| GGDEF domain-containing protein [Burkholderia glumae BGR1] gi|237879742|gb|ACR32074.1| GGDEF domain protein [Burkholderia glumae BGR1] Length = 509 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 12/169 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +L R D L+GL N AF ++L S + LS++F DID FK ND +GHP Sbjct: 333 QQLHRLVRTDALTGLGNRRAFDATLHSEWLRAQRTGKPLSLLFVDIDQFKAYNDRYGHPA 392 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ + L P V R GGEEF + A + +R I I Sbjct: 393 GDEVLREVGRVLTQCVRRPSDSVARYGGEEFVVTLPETDAAGATHIGEHMRDSIYELAIP 452 Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255 S+ +T+S G+ P+++ + AD ALY AK +GRNR+ Sbjct: 453 HSTSRHGRVTVSIGVVT-SGDTPVASDLAFVSLADTALYHAKTAGRNRI 500 >gi|229515744|ref|ZP_04405203.1| GGDEF family protein [Vibrio cholerae TMA 21] gi|229347513|gb|EEO12473.1| GGDEF family protein [Vibrio cholerae TMA 21] Length = 358 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 I+V+NL II T+ +L + +E I ++R+ + D L+G N F + Sbjct: 167 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 216 Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ + DID+FKQIND++GH +GD VI ++ L + T V R GGEE Sbjct: 217 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 276 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238 FA A + + + + +R I + ++ P + ++I A I E H+ ++ Sbjct: 277 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 333 Query: 239 RADQALYVAKKSGRNRVV 256 +AD+ALY AK+ GRNR++ Sbjct: 334 QADKALYQAKQQGRNRIM 351 >gi|218708303|ref|YP_002415924.1| hypothetical protein VS_0241 [Vibrio splendidus LGP32] gi|218321322|emb|CAV17272.1| hypothetical protein VS_0241 [Vibrio splendidus LGP32] Length = 471 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDK 153 + R+ L+ +D L+GL N F + NE+ + + FDID FK +ND +GH VGD+ Sbjct: 298 EHKRLKNLAMLDPLTGLYNRRGFEVRFLNQNEEPIIGVGVFDIDDFKVVNDQYGHKVGDE 357 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 VI ++ ++ V R GGEEF A +G S + + + ++ I ++G Sbjct: 358 VICHVAQLMLNSVRQQDIVARFGGEEFVVAIMGESSELLSSIFERIQNDISLQSYRCATG 417 Query: 214 PSIHITISAG-----------IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+I++S G I + I + +D+ LY AK SG+N+V Sbjct: 418 DKINISVSGGATLYSLYKFDSIGHLWENQSIRS----SDEQLYKAKASGKNQV 466 >gi|160877236|ref|YP_001556552.1| diguanylate cyclase [Shewanella baltica OS195] gi|160862758|gb|ABX51292.1| diguanylate cyclase with GAF sensor [Shewanella baltica OS195] Length = 605 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 10/177 (5%) Query: 89 ILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQIND 144 +L++ +S N ++ +++ D L+GL N F L + + + D+DYFK ND Sbjct: 424 VLQQALVSANTQLKEMAETDELTGLANRRPFTERLETVLQADIPAGLFMLDVDYFKSYND 483 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 +GH GD V+ ++D L P + R+GGEEFA + + +A L + Sbjct: 484 TYGHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQLCYL 543 Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E I + P +TIS G ++ ++ ++ RAD LY AK GRNRV Sbjct: 544 VEQLNIPHQASPLAVVTISIGSVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRV 600 >gi|159185329|ref|NP_355626.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] gi|159140584|gb|AAK88411.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] Length = 381 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%) Query: 53 IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-KELFISYNRISQLSRIDCLSG 111 I L+ F+ +Y L+ I ++L S+L ++ ++ +R + D L+ Sbjct: 162 IELSEFFESDYAFYMQLAASIFGFLLAL-------SVLASQISVTVDRHLHAAEHDPLTD 214 Query: 112 LLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 +LN F + + +I+ DID+FK+IND +GH GD V+ LSD L Sbjct: 215 VLNRRGFDRRVPDFRNDTPDGAIIACDIDHFKRINDVYGHAAGDIVLIGLSDLLRRNAPD 274 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 V R GGEEF G + A LAN +R + + + G + IT S G++ Sbjct: 275 DALVARFGGEEFVVFLPGQTAAAAGQLANGMRTGLSSLDWR-NRGVTSQITASFGVSAVA 333 Query: 229 HKE-PISTIIYRADQALYVAKKSGRNRVV 256 + I I RAD +LY AK+ GR++VV Sbjct: 334 RGDHSIHDAIKRADDSLYAAKRGGRDQVV 362 >gi|262402293|ref|ZP_06078854.1| GGDEF domain protein [Vibrio sp. RC586] gi|262351075|gb|EEZ00208.1| GGDEF domain protein [Vibrio sp. RC586] Length = 352 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 4/137 (2%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L ++ D+DYFK IND +GH GDKV+ + L V G R+GGEEF S Sbjct: 208 LCLLVIDLDYFKSINDQYGHDTGDKVLIDTTRLLTQVVGDNNLY-RIGGEEFCVTLFDQS 266 Query: 189 EQEAAILANDLRKIIENSQINISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 +A + LR I+ SQ + G I +TIS G+ E + ++ ++ AD LY A Sbjct: 267 LTQAERVCERLRAIV--SQHLFAYGDKRIQLTISIGVCEYQSGDQLNDLLKFADIELYRA 324 Query: 248 KKSGRNRVVCFSDIENN 264 KK+GRN+V F ++ Sbjct: 325 KKAGRNQVRLFRHTQDK 341 >gi|325982310|ref|YP_004294712.1| diguanylate cyclase [Nitrosomonas sp. AL212] gi|325531829|gb|ADZ26550.1| diguanylate cyclase [Nitrosomonas sp. AL212] Length = 266 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 6/131 (4%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L +V D+D FK+INDNFGH GD V+ L V R GGEEF L Sbjct: 135 LGVVLIDLDNFKKINDNFGHQYGDSVLINLVTVAKETLRPSDIVARFGGEEFVIL-LPEV 193 Query: 189 EQEAAILANDLRKIIENSQINIS---SGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 E E A+ ++++ N + N S SI IT SAG+A R E +++I RAD+ALY Sbjct: 194 ELEDALTI--IQRLQNNLERNFSLQIDNESIPITFSAGVALRSFGEHQNSVISRADKALY 251 Query: 246 VAKKSGRNRVV 256 AK++G+NR + Sbjct: 252 QAKRTGKNRAI 262 >gi|86144250|ref|ZP_01062582.1| hypothetical protein MED222_07573 [Vibrio sp. MED222] gi|85837149|gb|EAQ55261.1| hypothetical protein MED222_07573 [Vibrio sp. MED222] Length = 487 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 16/210 (7%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYN--RISQLSRIDCLSGLLNHSAF 118 LE L +N SL+++S+ ++L++ +S + L++ + +I ++ +D L+GL N F Sbjct: 276 LEQELNKNHSLLLVSL-MTLVISLLSIIAVLVLYLRHRHLKILDVASLDYLTGLSNRRDF 334 Query: 119 ISSL-------GSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 IS + Y K + I+ DID+FK +ND GH GD+VI ++ L Sbjct: 335 ISQVKMRILECSPYPLKGVGIILLDIDHFKSVNDLHGHNEGDRVICAVAKVLKQFANENR 394 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 + R GGEEF +E + L+ +LR+ +E + G + +T+S G Sbjct: 395 LIARYGGEEFIFVTFDCNEYQLYELSEELRRSVEKIE-----GLVLPVTVSVGCRYANAL 449 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I I +AD+ALY AKK+GRN + + Sbjct: 450 FHIEGTIDQADKALYQAKKNGRNNTQVYRE 479 >gi|296167204|ref|ZP_06849610.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897445|gb|EFG77045.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 700 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 12/162 (7%) Query: 99 RISQLSR---IDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 R ++L+R D L+ + N SA S L + ++ I+F DI++FK IND GH GD Sbjct: 531 REAELARQATTDTLTAIANRSAAWSQLEQLDAADDGYGILFCDIEHFKSINDRHGHRAGD 590 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ ++ +L+ G V R GG+EF + E A+L + + ++ + I ++ Sbjct: 591 ELLVEIARRLLAAVGDDGLVARWGGDEFLVITDAVDDPELALLTDRIASEVQRTPITLAG 650 Query: 213 GPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKS 250 G I I ++ G A H+ + ++ RADQA+Y ++S Sbjct: 651 GTEISIVLTVGRA--AHRSGDGRSVDAVLERADQAMYEQRRS 690 >gi|289670223|ref|ZP_06491298.1| hypothetical protein XcampmN_17466 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 385 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 88/181 (48%), Gaps = 20/181 (11%) Query: 96 SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145 S NR+ L+ D L+G+ N ++L E LSI F D+D FK++ND Sbjct: 195 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDDFKRVNDA 254 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203 GH VGD+V+ + L + T V R GGEEF L + +AA++ + L + Sbjct: 255 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPKTPADAALMVIERILTETA 313 Query: 204 ENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + GP +HIT SAG+A ER E I ++ AD LY +K GRNRV + Sbjct: 314 RTPMAQLPGGP-LHITFSAGLATHGGVERQF-ESIEHLLQAADSTLYRSKHRGRNRVTAY 371 Query: 259 S 259 Sbjct: 372 D 372 >gi|317133633|ref|YP_004092947.1| diguanylate cyclase [Ethanoligenens harbinense YUAN-3] gi|315471612|gb|ADU28216.1| diguanylate cyclase [Ethanoligenens harbinense YUAN-3] Length = 360 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 2/124 (1%) Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID FK IND +GH GD V+ LSD + F R GGEEF GS+ +E Sbjct: 238 LLDIDDFKVINDVYGHLAGDLVLKTLSDVVQQKLRVSDFAFRWGGEEFLLLVKGSAPEET 297 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A + +R+ +E++++ P I T++ G ++P+S+I + DQ +Y+ K+ G+ Sbjct: 298 AHILERIRQAMEDTEVLFEQHP-IRFTVTIGADAFDIRDPLSSINH-CDQKMYMGKRGGK 355 Query: 253 NRVV 256 NRVV Sbjct: 356 NRVV 359 >gi|261339975|ref|ZP_05967833.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC 35316] gi|288317893|gb|EFC56831.1| putative GGDEF domain protein [Enterobacter cancerogenus ATCC 35316] Length = 410 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F + N ++ S++ D D FK IND FGH GD+V+ LS Sbjct: 256 DSMTGLLNRRQFYAITEQTNPSHLPAQQQFSLLLVDTDRFKDINDVFGHLKGDEVLISLS 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L +V R GGEEF + + A +A +R + + I I P T Sbjct: 316 RTLEACCRKDDYVFRWGGEEFVLLLPRTPLETAMQIAETIRATV--AHITIPGLPR--FT 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRN+V+ Sbjct: 372 VSIGVARHNQGENIDELFKRVDDALYRAKNDGRNKVLA 409 >gi|329922613|ref|ZP_08278165.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] gi|328941955|gb|EGG38238.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] Length = 663 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 10/130 (7%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ DID FKQ+ND FGH GDK++ +S + R GGEE A G Sbjct: 530 SLIVVDIDEFKQVNDTFGHQRGDKILKQVSSIVKTTIRHSDIPARWGGEELAVYLPGLGI 589 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYV 246 Q+A +A +R + ++ +T+S GI+E K + ++ YRAD ALY Sbjct: 590 QQAVQVAERIR-------LRVAEETDPRVTVSCGISEWNWTNDKISVESLFYRADMALYE 642 Query: 247 AKKSGRNRVV 256 AK GRNR+V Sbjct: 643 AKNGGRNRIV 652 >gi|229523526|ref|ZP_04412931.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229337107|gb|EEO02124.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] Length = 358 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 I+V+NL II T+ +L + +E I ++R+ + D L+G N F + Sbjct: 167 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 216 Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ + DID+FKQIND++GH +GD VI ++ L + T V R GGEE Sbjct: 217 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 276 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238 FA A + + + + +R I + ++ P + ++I A I E H+ ++ Sbjct: 277 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 333 Query: 239 RADQALYVAKKSGRNRVV 256 +AD+ALY AK+ GRNR++ Sbjct: 334 QADKALYQAKQQGRNRIM 351 >gi|237653310|ref|YP_002889624.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Thauera sp. MZ1T] gi|237624557|gb|ACR01247.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Thauera sp. MZ1T] Length = 1093 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 13/165 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI L+R D L+GLLN SA+ + ++++ +++F D+D FK +ND+ GH G Sbjct: 658 RIRYLARFDPLTGLLNRSAWQDHAQDVLRHAARHDDRCAVLFLDLDDFKTVNDSLGHAAG 717 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209 D+++A ++ +L V R+GG+EF + L +E+ A + L + QI+ Sbjct: 718 DRLLAQVACRLGGCVRAEDLVARIGGDEFVILLSRLAHAEEPARVAERVLDALARPLQID 777 Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 S P + + S GIA I T++ AD A+Y AK+SGRN Sbjct: 778 --SQP-LRVGASIGIALYPADGGEIDTLLKHADTAMYEAKESGRN 819 >gi|104779483|ref|YP_605981.1| sensory box protein [Pseudomonas entomophila L48] gi|95108470|emb|CAK13164.1| putative sensory box protein [Pseudomonas entomophila L48] Length = 329 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 77/130 (59%), Gaps = 4/130 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FKQIND++GH GD+V+ ++D V GR+GGEEFAA G + Sbjct: 200 LAFLLLDIDDFKQINDSYGHQEGDQVLQRIADAGKAVLRRGDQFGRIGGEEFAAVFPGCT 259 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK-EPISTIIYRADQALYV 246 Q A +A L++ I+ +++ S + +T+S G+ + E + ++ RAD A+Y Sbjct: 260 AQMAEQIAERLQREIQ--RLSFSHEQQTYGVTVSQGLTGLTDEDEKLDSLFARADAAMYR 317 Query: 247 AKKSGRNRVV 256 AK+ G+N++V Sbjct: 318 AKRQGKNQIV 327 >gi|325293539|ref|YP_004279403.1| diguanylate cyclase [Agrobacterium sp. H13-3] gi|325061392|gb|ADY65083.1| diguanylate cyclase [Agrobacterium sp. H13-3] Length = 380 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 9/165 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 S ++ L+ D L+G+ N F ++ G + + DID+FK IND FGH VGD V Sbjct: 214 SERKLLVLANTDPLTGVKNRRFFFQAMPGVPGPNDAAMLLDIDHFKSINDRFGHAVGDSV 273 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ ++ + R GGEEF G+ Q+A ++ +R I ++++ G Sbjct: 274 LQEVAKRIGGSIRGGDVLARYGGEEFIIFLPGAGVQKACMIGERIRDAIAITEVD-CGGL 332 Query: 215 SIHITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +TIS G+A RC + T+ AD+ALY AK GRN V Sbjct: 333 RVGVTISIGVATSGDMRCD---LQTLAEMADRALYRAKTDGRNCV 374 >gi|303326574|ref|ZP_07357017.1| developmental regulator MorA [Desulfovibrio sp. 3_1_syn3] gi|302864490|gb|EFL87421.1| developmental regulator MorA [Desulfovibrio sp. 3_1_syn3] Length = 546 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 20/168 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+S +R+D L+GL N +A +++ + + + + DID FK++ND+FGH VG Sbjct: 378 RLSAQARLDPLTGLCNKAATEQHISETLAACKAEDRRFAFFILDIDDFKRVNDDFGHAVG 437 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA----AALGSSEQEAAILANDLRKIIENSQ 207 D VI + +L F GR+GG+EFAA E++A+ L LRK Sbjct: 438 DMVIREFALELKRQFRDTDIAGRIGGDEFAAFLPVPGRAWVERKASKLGAALRKSF---- 493 Query: 208 INISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRN 253 +S + IT S GI A R K+ +T+ AD ALY AKK G++ Sbjct: 494 --MSETYAFGITASIGIALAPRDGKD-FATLYRNADAALYQAKKRGKD 538 >gi|269968397|ref|ZP_06182415.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269827024|gb|EEZ81340.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 525 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 8/160 (5%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D ++GLLN LG + N S++ DID+FK +NDN+GH VGD ++ + + Sbjct: 370 DSMTGLLNRRGLDKVLGLFKQENTAFSVLALDIDHFKSVNDNYGHDVGDNLLREFAQLMK 429 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + + R GGEEF + A +A +R +E + +T+S G Sbjct: 430 DQARSNDHLCRSGGEEFMMFLEKTDVNHAMDVAERIRHNVEQHDFQVVG----KVTVSLG 485 Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ + + PI ++ AD ALY AK +GRNR D + Sbjct: 486 VSHWKGNDTPIEAVMKDADNALYKAKHNGRNRTELGDDAQ 525 >gi|238798257|ref|ZP_04641742.1| Predicted diguanylate cyclase [Yersinia mollaretii ATCC 43969] gi|238717895|gb|EEQ09726.1| Predicted diguanylate cyclase [Yersinia mollaretii ATCC 43969] Length = 366 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 123/255 (48%), Gaps = 23/255 (9%) Query: 31 FSIFF-------SIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83 F+IFF FIA + A L I L F + + ++ L L +I ++ L+ Sbjct: 113 FTIFFISTIALSDNFIAFCLHTAPATLTVIFLDDFQNI-FRIIFTLMLPLIGFSLHHLMS 171 Query: 84 YISGSILKELFIS-YN---RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135 S ++L YN + S LS ID L+ L N + L + + ++ D Sbjct: 172 RRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYVLLLD 231 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK NDN+GH +GD+ + ++ + + V R GGEEF SE+ A+ L Sbjct: 232 IDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 291 Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A +R+ + I + S +T+SAGI+ +++ + AD+ALY AKK GRN Sbjct: 292 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLASSLKAADEALYRAKKDGRN 350 Query: 254 RVV----CFSDIENN 264 +V FS++E++ Sbjct: 351 KVAFAGKKFSNVESS 365 >gi|237800927|ref|ZP_04589388.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023783|gb|EGI03840.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 523 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 11/166 (6%) Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLDLEFKRARRERSTLSLILIDADHFKRYNDHYGHLAGDECLVTLA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A ++ I + QI + P + Sbjct: 396 RMVEQCIRRPADVAARYGGEEIAVVLPGTDESNARQVAENILHAIGDRQIEHADSPFGIV 455 Query: 219 TISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 T+S G+A + +I AD+ALY AK GRNRV SDI Sbjct: 456 TVSLGVATFMGTDRRLDQRGLIELADRALYAAKSQGRNRVNAASDI 501 >gi|160881794|ref|YP_001560762.1| diguanylate cyclase [Clostridium phytofermentans ISDg] gi|160430460|gb|ABX44023.1| diguanylate cyclase [Clostridium phytofermentans ISDg] Length = 371 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 15/163 (9%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN +L ++ ++ D+D FK+ ND+FGHP GDK + ++ Sbjct: 197 DPLTGLLNRRGLDRNLEVLLPYCIRSGIRIGLMIVDVDNFKRYNDSFGHPQGDKCLKMVA 256 Query: 160 DQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH- 217 ++ + R+GGEEF E E A +R IEN +NI P++ Sbjct: 257 AEIRKTARRSSDLTARIGGEEFVILVYDEKESELISFAEKIRTNIEN--LNIKHSPTLGA 314 Query: 218 --ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G++ + +S + ADQ+LY AKKSGR+ VV Sbjct: 315 AVVTVSIGVSSVVPTTMQCMSELYKSADQSLYTAKKSGRDVVV 357 >gi|138895392|ref|YP_001125845.1| hypothetical protein GTNG_1736 [Geobacillus thermodenitrificans NG80-2] gi|196249158|ref|ZP_03147857.1| diguanylate cyclase and metal dependent phosphohydrolase [Geobacillus sp. G11MC16] gi|134266905|gb|ABO67100.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196211387|gb|EDY06147.1| diguanylate cyclase and metal dependent phosphohydrolase [Geobacillus sp. G11MC16] Length = 608 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 12/182 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQ 141 + ++ Y +S + D L+GL NH F +L + L++ D+D FK+ Sbjct: 220 VFRKFLYLYQLVSNRANKDHLTGLYNHGFFKETLKEQFADCKRLKQPLTLALLDLDDFKK 279 Query: 142 INDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND GH GD+++ F L V GT + R GGEEFA +++++A + N LR Sbjct: 280 YNDRNGHLQGDRLLMFFGKLLQKAVEGTNFTIARYGGEEFAILMPNTTKEDAYVFLNRLR 339 Query: 201 KIIENSQIN-ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 K + ++ + + P ++ S GIAE K+ + +I+RADQALY AK G+N V Sbjct: 340 KQVNDTYFDGVEHIPYRCLSFSCGIAE-MEKDMYESDELIHRADQALYYAKAQGKNNVQL 398 Query: 258 FS 259 + Sbjct: 399 YD 400 >gi|332991744|gb|AEF01799.1| response regulator receiver domain-containing protein [Alteromonas sp. SN2] Length = 576 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 15/177 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143 K L S + +L+ D L+ L N A SS + +++ D+D+FK IN Sbjct: 401 KALRASNEMLKKLAANDGLTNLPNRRSIDLFVDASFSSEADNHHHIAVALIDLDHFKNIN 460 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH GD V+ ++ L + GR GGEEFA SEQ + D+ K I Sbjct: 461 DTFGHEAGDTVLIEIAKILQPLNSKECMAGRFGGEEFAIIQQNVSEQHFSDTLADIHKQI 520 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIY---RADQALYVAKKSGRNRVVC 257 + SG I I I + I+Y RAD+ALY AK +GRNR++ Sbjct: 521 NTLSLQQLSGLKIGACIGWTICTDA-----ADIVYAFRRADKALYKAKDAGRNRIIA 572 >gi|229591014|ref|YP_002873133.1| putative GGDEF domain signaling protein [Pseudomonas fluorescens SBW25] gi|229362880|emb|CAY49790.1| putative GGDEF domain signaling protein [Pseudomonas fluorescens SBW25] Length = 547 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 17/166 (10%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+G+ N F L +++ D DYFK++ND++GH +GD V Sbjct: 388 KLATHDALTGVYNRRRFDEKLAENSLLFQRTGRTFALLLIDADYFKRVNDSYGHAIGDDV 447 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSG 213 + L+ + FV R GGEEFA E ++ ++A +R +E + Sbjct: 448 LCQLAALIKNTTRATDFVARYGGEEFAVLLPEVEEPDSPDVVAEKIRVAVEAAVF----- 502 Query: 214 PSI-HITIS--AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P++ H+T+S G+AE ++ S ++ RAD LY AK +GRNRV Sbjct: 503 PTVGHVTVSIGVGVAEPSDRD-TSALLKRADMQLYEAKAAGRNRVA 547 >gi|226225891|ref|YP_002759997.1| putative two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089082|dbj|BAH37527.1| putative two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 491 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 10/167 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ QL++ D L+ LLN A + + Y+ L+++ D+D+FK++ND +GH VG Sbjct: 323 RLEQLAQTDPLTQLLNRRALTERITAEMERALRYDSTLALLMIDLDHFKKVNDTYGHLVG 382 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ + L R GGEEF + + A A +R +E Sbjct: 383 DDVLRDVGQLLGHTIRGSDITARYGGEEFLVLLPETDDAGAVAFAERIRVAMEEHPFARD 442 Query: 212 S-GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S + +T S G+A E + + RAD ALY AK GRNRV Sbjct: 443 SMAEPLKLTASIGVAVFPAARIENVEDLFARADAALYRAKAEGRNRV 489 >gi|116251453|ref|YP_767291.1| transmembrane GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256101|emb|CAK07182.1| putative transmembrane GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841] Length = 471 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 12/172 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 S + L+ D L+G+LN + E+ ++++ FD+D+FK++ND FGH Sbjct: 262 SERHLRALTLTDSLTGVLNRRGLLGYFDGIQERAHNEQRQVAVILFDLDHFKRVNDRFGH 321 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ + +F GR+GGEEFAA A + + EA +A +R E ++ Sbjct: 322 QSGDAVLTAFARMARQYIPNNIF-GRMGGEEFAAFAAVADQTEAEAIAEAIR--TEFCRL 378 Query: 209 NISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258 +S+G +I +T+S GIA E I +I AD+ALY AK +GRN V F Sbjct: 379 PVSTGEAIVPVTVSIGIALASSIEANIDKLISAADRALYAAKAAGRNCTVTF 430 >gi|315636037|ref|ZP_07891296.1| GGDEF domain protein [Arcobacter butzleri JV22] gi|315479693|gb|EFU70367.1| GGDEF domain protein [Arcobacter butzleri JV22] Length = 415 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 12/211 (5%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118 Y +E + EN ++ +I L + KEL + + + + D L+ LLN A+ Sbjct: 209 YKIENSIKENNKILSNNIEKFKFLNRQIEELQKELIL----VKEEQQFDFLTSLLNRRAY 264 Query: 119 ISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 + ++ +IVF DID+FK IND +GH GD ++ + L + Sbjct: 265 QEEVKKVEKQFNIFGSDFAIVFIDIDHFKNINDVYGHACGDAILKNFATILKDLTRKEDI 324 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 + R GGEEF A SE E ++ ++N + I + I SAG+A R Sbjct: 325 ISRYGGEEFVALVNYQSETEIQRYIKRVKTALQN-HVFIYKTQQLQIEFSAGVAFRNKYH 383 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + AD+ LY AK GRN+V+ +IE Sbjct: 384 SFAEAEASADKLLYKAKNKGRNKVIFDDEIE 414 >gi|150021404|ref|YP_001306758.1| diguanylate cyclase [Thermosipho melanesiensis BI429] gi|149793925|gb|ABR31373.1| diguanylate cyclase [Thermosipho melanesiensis BI429] Length = 1339 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 83/165 (50%), Gaps = 17/165 (10%) Query: 106 IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ L F + Y E+LSI+ D+D+FK+IND +GH +GD+V+ + Sbjct: 1179 LDPLTKLYTRYYFAEKIDEYFEKAKKFKERLSIIMCDLDHFKKINDKYGHLLGDEVLREI 1238 Query: 159 SDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + L V VGR GGEEF SS A +A LRK IE I P Sbjct: 1239 AKILKENVRRNNDIVGRYGGEEFIILLPNSSLNYAKEIAERLRKKIE----AIDKFP-FK 1293 Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +T+S GIA E K + Y AD ALY AK+ GRNRV+ F Sbjct: 1294 VTMSFGIASYPEVLVKTSDELVGY-ADDALYKAKELGRNRVIVFE 1337 >gi|117618694|ref|YP_856635.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560101|gb|ABK37049.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 457 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN----EKLSIVFFD 135 +LL + + L + + + + +D L+GL + F L + ++ D Sbjct: 262 ILLSLVHTRQQQALLATQRELERRANLDALTGLDSRHHFEQQLAARACRSARPWQLLLID 321 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 +D FKQIND GHP GD ++ + + GRLGG+E A + +S+ A Sbjct: 322 LDNFKQINDRHGHPAGDAMLRAVGRVIRESLPPAGLAGRLGGDELALLVMETSQTLPAC- 380 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 L++ + ++ ++ GP I++S G+ E RAD+ALY AK++GR R Sbjct: 381 CQTLQQRVADATRPLAGGP---ISLSIGLTSLQQGERFEQAYPRADRALYAAKQAGRQR- 436 Query: 256 VCFSDIENN 264 C + ++ Sbjct: 437 ACIQEPHHS 445 >gi|323491785|ref|ZP_08096960.1| hypothetical protein VIBR0546_11352 [Vibrio brasiliensis LMG 20546] gi|323313920|gb|EGA67009.1| hypothetical protein VIBR0546_11352 [Vibrio brasiliensis LMG 20546] Length = 655 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 14/177 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140 S LKE+ R+ L+ D L+GL N S +S S + L++++ D+D FK Sbjct: 481 SNLKEM----ERLEHLAHHDSLTGLANRAKLYRVLSEVLSGERSGKDGLALLYLDLDGFK 536 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND +GH GD+V+ +SD+L+ + V RL G+EF +++Q +ILA L Sbjct: 537 GVNDTYGHDAGDEVLKQVSDRLLSQVRSNDLVARLSGDEFVIMINSTTKQSVSILAERLV 596 Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I+ I G + + S G+ + + + ++ AD A+Y AK SG+ R V Sbjct: 597 ALIQKE--IIYKGRQLKVGASIGVHFVEDYDKSMDELLKAADTAMYQAKASGKGRFV 651 >gi|254720404|ref|ZP_05182215.1| response regulator PleD [Brucella sp. 83/13] gi|265985422|ref|ZP_06098157.1| response regulator receiver modulated diguanylate cyclase [Brucella sp. 83/13] gi|306839019|ref|ZP_07471840.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653] gi|264664014|gb|EEZ34275.1| response regulator receiver modulated diguanylate cyclase [Brucella sp. 83/13] gi|306405925|gb|EFM62183.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653] Length = 461 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 9/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S R S D L+GL N ++ + LSI+ D+D+FKQ+N+ +GH Sbjct: 288 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 347 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ S +L + R GGEEF + Q A +A +R I+ + Sbjct: 348 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 407 Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + SG + +T+S G+A R + + + RA AL AK+SGRNR+V Sbjct: 408 VLDSGKRRVSMTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 457 >gi|229529552|ref|ZP_04418942.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|229333326|gb|EEN98812.1| GGDEF family protein [Vibrio cholerae 12129(1)] Length = 385 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 18/225 (8%) Query: 41 TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF----IS 96 V+ I + Y+ + L + V S +++ +L I G++L LF I Sbjct: 163 AVVLAVMIVMLYVPFVAYQTLPLLAVFRASTIVVQ---NLFFFIILGTMLM-LFLFEEIE 218 Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGD 152 ++R+ + D L+G N F + ++ + DID+FKQIND++GH +GD Sbjct: 219 WHRLRSIQ--DELTGTFNRRHFKEQVQQKLKQSKQKSMVALVDIDHFKQINDSYGHDIGD 276 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 VI ++ L + T V R GGEEFA A + + + + +R I + ++ Sbjct: 277 SVITYVVRHLESLALTECLVARYGGEEFAIFARENDFERVSQALDSVRDAI-SVGFHVEQ 335 Query: 213 GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P + ++I A I E H+ ++ +AD+ALY AK+ GRNR++ Sbjct: 336 QPLKVSVSIGAVIFESSHE--YGEVLRQADKALYQAKQQGRNRIM 378 >gi|225872142|ref|YP_002753597.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196] gi|225792482|gb|ACO32572.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196] Length = 367 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 14/190 (7%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134 L +I+ + L + + ++ D L+GLLN AF + SL +++ Sbjct: 169 LAFIAAIMWLSLSAQRDELRLMAETDGLTGLLNRRAFEEILRHELRSLDGSKADTALLLL 228 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID FK IND+ GH GD+VI +S + + R GG+EF + +A Sbjct: 229 DIDQFKTINDDLGHLAGDEVIRRVSTAIKTAARPSDVLARFGGDEFVVLLRHLNGLQAMA 288 Query: 195 LANDLRKIIENSQINISSGPSIHITISA--GIAERCHKEPISTIIYRADQALYVAKKSGR 252 +A R I Q G H+TI+A G+A + ++I RAD+ALY +K +GR Sbjct: 289 VAERFRFEIAALQ-----GLPNHLTITASVGLAFLHGMDSPYSLIGRADEALYRSKSNGR 343 Query: 253 NRVVCFSDIE 262 NRV D E Sbjct: 344 NRVSVGDDFE 353 >gi|295694984|ref|YP_003588222.1| diguanylate cyclase/phosphodiesterase [Bacillus tusciae DSM 2912] gi|295410586|gb|ADG05078.1| diguanylate cyclase/phosphodiesterase [Bacillus tusciae DSM 2912] Length = 581 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 5/149 (3%) Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+G+ N F L + + +++F D D FK INDN GH GDK++ L L Sbjct: 165 DSLTGVYNRRRFQEKLADILNRTARGTLLFIDFDNFKAINDNLGHRAGDKLLGELIGSLR 224 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V F+GR+GG+EFA ++ +EA +L + ++ ++ + G + +T S G Sbjct: 225 GVVEGRGFLGRIGGDEFALFLPEATIEEAKVLGAAIERVFRRHRV-LLDGRRVIMTASIG 283 Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSG 251 IAE + ++ RAD A+Y AK++G Sbjct: 284 IAEFPTSGSTVEQLLARADTAMYTAKRTG 312 >gi|322420564|ref|YP_004199787.1| diguanylate cyclase [Geobacter sp. M18] gi|320126951|gb|ADW14511.1| diguanylate cyclase [Geobacter sp. M18] Length = 459 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 12/179 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 GS+ + YN L ID L+GL N+ + Y L ++F DID Sbjct: 272 QGSLALDNAARYNIAKDLLYIDELTGLYNYRYLDVVLERELKRCERYGSNLGVLFLDIDL 331 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +NDNFGH +G +V+ + + V R GG+E+ + + + AAI+A Sbjct: 332 FKSVNDNFGHLIGSRVLREVGMLVRKSVRDVDAVIRYGGDEYTIVLVETGMEGAAIVAER 391 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNR 254 +R+ IE + G +I +T+S G A C + T ++ ADQA+Y K +G+NR Sbjct: 392 IRRTIEAHTFAKADGLAIKLTVSLGYA--CAPDDAITKAELLEMADQAMYRGKSAGKNR 448 >gi|261405770|ref|YP_003242011.1| GAF sensor-containing diguanylate cyclase [Paenibacillus sp. Y412MC10] gi|261282233|gb|ACX64204.1| diguanylate cyclase with GAF sensor [Paenibacillus sp. Y412MC10] Length = 663 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 10/130 (7%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ DID FKQ+ND FGH GDK++ +S + R GGEE A G Sbjct: 530 SLIVVDIDEFKQVNDTFGHQRGDKILKQVSSIVKTTIRHSDIPARWGGEELAVYLPGLGI 589 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYV 246 Q+A +A +R + ++ +T+S GI+E K + ++ YRAD ALY Sbjct: 590 QQAVQVAERIR-------LRVAEETDPRVTVSCGISEWNWTNDKISVESLFYRADMALYE 642 Query: 247 AKKSGRNRVV 256 AK GRNR+V Sbjct: 643 AKNGGRNRIV 652 >gi|209549026|ref|YP_002280943.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534782|gb|ACI54717.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 424 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 11/173 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-ISSLGSYNEKL------SIVFFDIDYFKQINDNFGHP 149 YN + + + D L+G+ + + + + E L +++ D D+FK +ND +GH Sbjct: 251 YNDLLERTGRDMLTGVYDRTRMEVEAPLMMREALRQGLYATVLIIDADHFKDVNDGYGHL 310 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ ++ +L + + R GGEEF A G+ +EA +LA LR I S Sbjct: 311 QGDEVLKAIAARLGTTLRSSDRIFRFGGEEFVAVCPGTDHEEALLLAERLRWTIATSVKT 370 Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261 P +T+S G+A + ++ AD LY AKKSGRN VV S + Sbjct: 371 PDDKP---VTVSIGVATADEDGVDFTAVLTAADGRLYAAKKSGRNCVVGRSGV 420 >gi|21242173|ref|NP_641755.1| hypothetical protein XAC1420 [Xanthomonas axonopodis pv. citri str. 306] gi|21107589|gb|AAM36291.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 507 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 18/180 (10%) Query: 96 SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145 S NR+ L+ D L+G+ N ++L E LSI F D+D FK++ND Sbjct: 317 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDDFKRVNDA 376 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203 GH VGD+V+ + L + T V R GGEEF L ++ +AA++ + L + Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTPADAALMVIERILAETA 435 Query: 204 ENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259 + GP +HIT SAG+A E I ++ AD LY +K GRNRV + Sbjct: 436 RTPMAQLQGGP-LHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494 >gi|94984488|ref|YP_603852.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300] gi|94554769|gb|ABF44683.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300] Length = 563 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 10/167 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGD 152 S R +R D L+GLLN SL L + FDID FK +ND+ H GD Sbjct: 392 SVRRAEAQARQDALTGLLNRRGLQDSLAQLTPDAAPLLLALFDIDDFKSVNDHHSHATGD 451 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + ++++L + + R GGEEF G++ EA L LR+ IE ++ S Sbjct: 452 AALQGVANRLSALAPEGSLLARYGGEEFLLVLPGANPAEAPALIERLRQGIE---VHNWS 508 Query: 213 G--PSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + +T+SAG + E + +AD LY AK++GRNR+ Sbjct: 509 PLLPGMSLTVSAGYTLTEGLDDASLHAAFQQADDHLYQAKRAGRNRI 555 >gi|330010583|ref|ZP_08306815.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] gi|328534481|gb|EGF61070.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] Length = 302 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 74/153 (48%), Gaps = 10/153 (6%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GLLN F + + ++ DID+FK IND GH GD+V+ LS L Sbjct: 140 DPLTGLLNRREFHRLVEAPTFIPRGYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILE 199 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + R GGEEF S A ILA +R+ + Q ++ +T+S G Sbjct: 200 TSVDREDKIYRWGGEEFLLFLPHSPIGRALILAEGIRQAVSEYQ-------TLSVTVSIG 252 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +AE E + + R D+ALY AK GRNRV Sbjct: 253 VAEHHDGETVDQLFSRVDKALYAAKNDGRNRVT 285 >gi|289676297|ref|ZP_06497187.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 659 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND+ GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 311 LFMDLDGFKQINDSLGHEAGDQVLLWVAEQFKATMRPYDVLARIGGDEFTVVIDGLDYPE 370 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVEITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426 Query: 248 KKSGRNR 254 K++GR + Sbjct: 427 KRAGRQQ 433 >gi|209808968|ref|YP_002264506.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] gi|208010530|emb|CAQ80898.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] Length = 481 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 12/217 (5%) Query: 49 FLFYIGLTPFYGLEYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRID 107 F+ + ++ +Y + +S + +IS+ ++LL+ + +L +L + +L+ D Sbjct: 265 FILIVSKPKYFWADYAYLSIISFILVISLVVALLMK--NTFLLSKLLSQNDHYFKLALHD 322 Query: 108 CLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+G+LN F + E + V FDIDYFKQIND +GH GD+V+ + Sbjct: 323 ELTGVLNRRGFEKNTKQVLELAKSSPTSIVSVLFDIDYFKQINDTYGHDKGDEVLRSFT- 381 Query: 161 QLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 Q+ T V RLGG+EF + Q+A N+L I ++ G + Sbjct: 382 QICQAHITHCDVFARLGGDEFVMLLPNQNGQQATKCINELLDKIRAIRVETPLGSISVSS 441 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 R E I+ + RAD+ALY AKK GRN VV Sbjct: 442 SIGMSEVRSPNESIAKWLERADKALYQAKKQGRNCVV 478 >gi|160893966|ref|ZP_02074745.1| hypothetical protein CLOL250_01521 [Clostridium sp. L2-50] gi|156864344|gb|EDO57775.1| hypothetical protein CLOL250_01521 [Clostridium sp. L2-50] Length = 1004 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 105 RIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 R D L+GLLNH+AF + + G +N + + D+D FKQ ND +GH GDK + + Sbjct: 843 RTDSLTGLLNHAAFRNDMEMKLLSGDFNAMM--IMIDVDKFKQYNDTYGHHNGDKYLILV 900 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIH 217 + L+ F R+GG+EFA + + ++I + + + S Sbjct: 901 AQTLLASLRNEDFASRMGGDEFAVMMFFNKSVPEKAIKEHAQQIFDKVNLTVKSAEGGTG 960 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I++ A IA+ + + + AD ALY AK+SGR R+V Sbjct: 961 ISMGAVIAKS--EVTFNRLYEEADNALYEAKESGRGRLV 997 >gi|144898358|emb|CAM75222.1| (GGDEF domain) [Magnetospirillum gryphiswaldense MSR-1] Length = 619 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 11/162 (6%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GL N ++++ ++ I+ D+D+FK +ND +GH GD VI ++ Sbjct: 451 DPMTGLNNRRFLEEYVDTLVANVQRRQSQVGIMMLDLDFFKMVNDTYGHDAGDAVIKAMA 510 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HI 218 L V R GGEEF L +S ++A +A +R +E ++I +G ++ Sbjct: 511 KVLRQAVRASDMVIRYGGEEFLIVLLDASPEQADQIAEKIRSTVE--ALDIQAGTTVLRK 568 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 TIS G+A+ + + AD ALY AK +GRN+VV F+ Sbjct: 569 TISIGVADFPSDSDTFWQAVKFADVALYQAKDTGRNKVVRFN 610 >gi|90419209|ref|ZP_01227119.1| GGDEF domain [Aurantimonas manganoxydans SI85-9A1] gi|90336146|gb|EAS49887.1| GGDEF domain [Aurantimonas manganoxydans SI85-9A1] Length = 271 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 8/163 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+GL N F Y + ++ FD+D FK +ND +GH VGD Sbjct: 96 LEQAALTDPLTGLRNRRCFDRMFEEYVVAFDRVGRPVGLLLFDLDKFKAVNDTYGHDVGD 155 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ L V RLGGEEFA S A +R+ I I + Sbjct: 156 EVLKVVAGCLTDFARHRDVVARLGGEEFAIIVTNMSAPGLVSFAERIRQAISGLTIRVGD 215 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T+S G+A + + I RAD LY AK++GRNRV Sbjct: 216 -VKLRTTVSVGLASSEPGDGCAAIFKRADVNLYKAKQAGRNRV 257 >gi|56476007|ref|YP_157596.1| hypothetical protein ebA1086 [Aromatoleum aromaticum EbN1] gi|56312050|emb|CAI06695.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 581 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/271 (27%), Positives = 122/271 (45%), Gaps = 33/271 (12%) Query: 6 KDFLSIWLCHEKNLESFSPHTFMIYF-SIFFSIFIATVIFIANIFLFYI-GLTPFYGLEY 63 + L IW F P +I + +A +I + +I G+ +G+ Sbjct: 295 RAMLDIW--------GFEPDENLIGMRDVVLQSRVAPLIEQPEAYFEHIAGVLQMHGVSE 346 Query: 64 I---------LVENLSLVIISITISLLLG--YISGSILKELFISYNRISQLSRIDCLSGL 112 +V ++S V+ S +G +I + +E I+ ++ +L+ D L+ L Sbjct: 347 THEIGLCDGRIVTDVSTVVESAEGQRWIGRVWIYEDVTEERKIA-RKMVELAERDPLTNL 405 Query: 113 LNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-V 164 N F L + ++ ++ D+D FK IND FGH GD V+ LS + V Sbjct: 406 FNRRRFHEELNRLLAEATRHQVRVGLIAIDLDGFKPINDEFGHQAGDAVLVGLSRAVAGV 465 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 + MF RLGG+EF + E++ LA + ++IE + G S+++T S GI Sbjct: 466 IRRNEMFF-RLGGDEFGVLVPDAEERDLCELARRILEVIETQRFEF-EGRSMNLTASLGI 523 Query: 225 AE-RCHKEPISTIIYRADQALYVAKKSGRNR 254 A H + +I ADQA+Y +K GRNR Sbjct: 524 ALFPQHADNPEQLIAIADQAMYCSKNRGRNR 554 >gi|172058864|ref|YP_001815324.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15] gi|171991385|gb|ACB62307.1| diguanylate cyclase [Exiguobacterium sibiricum 255-15] Length = 558 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 18/171 (10%) Query: 104 SRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 SR D L+ L N AF S LSIV FDID+FK +ND +GH VGD V+ L Sbjct: 393 SRTDALTELANSRAFYEEGAQQFASDRYPLSIVLFDIDHFKYVNDTYGHKVGDLVLRELG 452 Query: 160 DQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++ + +F R GGEEF S + +A +A ++R + + + G + Sbjct: 453 RRIRSIQQKKHNVFAARYGGEEFVLLLHQSPQNQAIDVAEEVRHAVLDRPF-VVDGHRLS 511 Query: 218 ITISAGI------AERCHKEPISTIIYRADQALYV-AKKSGRNRVVCFSDI 261 ITIS G+ +ER +E + +AD ALYV K +GRN ++++ Sbjct: 512 ITISLGVDTVEYQSERSFEESLR----QADHALYVGGKHNGRNCTAHYANL 558 >gi|311104056|ref|YP_003976909.1| diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310758745|gb|ADP14194.1| diguanylate cyclase, GGDEF domain protein 3 [Achromobacter xylosoxidans A8] Length = 533 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 12/143 (8%) Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 L + + ++IV DID+FK IND GH GD+ + L+ + + + R GGEEF Sbjct: 386 LQAEEQPVAIVAIDIDHFKHINDRHGHAAGDRALRELAQLMSEGSRSGDTLARAGGEEF- 444 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGP---SIHITISAGIAERC-HKEPISTII 237 L + EAAI ++E ++ I++ P +I +TISAG+A H + + Sbjct: 445 VMLLPGAPLEAAI------GLVERLRLRIAAEPGVIAIPLTISAGVAAYPEHGATLDAAL 498 Query: 238 YRADQALYVAKKSGRNRVVCFSD 260 RADQALY AK GRN VC +D Sbjct: 499 QRADQALYYAKNHGRN-AVCVAD 520 >gi|260770551|ref|ZP_05879484.1| response regulator [Vibrio furnissii CIP 102972] gi|260615889|gb|EEX41075.1| response regulator [Vibrio furnissii CIP 102972] Length = 321 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 24/191 (12%) Query: 87 GSILKELFISYNRISQLSRI-------DCLSGLLNHS-------AFISSLGSYNEKLSIV 132 ++ +EL + ++ +L+RI D L+ + N IS G + LS++ Sbjct: 128 ANMRRELKRTSAKLEELNRILQHQANEDGLTQVFNRRFMDEKLREMISWHGRHEMALSVI 187 Query: 133 FFDIDYFKQINDNFGHPVGDK---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 FD+D+FK NDN+GH GD+ IA +++L G FVGR GGEEF + Sbjct: 188 LFDVDHFKPFNDNYGHIEGDRCLHTIAQAANKLFCRSGE--FVGRYGGEEFLILLTNTDV 245 Query: 190 QEAAILANDLRKIIENSQINIS-SGPSIHITISAG---IAERCHKEPISTIIYRADQALY 245 + A A ++ IE+ + S + HITIS G I H E ++ + +AD ALY Sbjct: 246 EGARAAAERIQDSIEHIHYPHAFSAVADHITISQGVVTITPDGH-ETLAQVYEQADNALY 304 Query: 246 VAKKSGRNRVV 256 AK +GRNR V Sbjct: 305 QAKSNGRNRYV 315 >gi|153212727|ref|ZP_01948384.1| GGDEF family protein [Vibrio cholerae 1587] gi|124116377|gb|EAY35197.1| GGDEF family protein [Vibrio cholerae 1587] Length = 392 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 21/231 (9%) Query: 34 FFSIFIATVIFIANI-FLFY--IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90 F++ +A +I + + F+ Y + L + I+V+NL II T+ +L + Sbjct: 168 LFAVVLAVMIVMLYVPFVAYQTLPLMAVFRASTIVVQNLFFFIILGTMLMLF------LF 221 Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNF 146 +E I ++R+ + D L+G N F + ++ + DID+FKQIND++ Sbjct: 222 EE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQQKLKQSKQKSMVALVDIDHFKQINDSY 277 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH +GD VI ++ L + T V R GGEEFA A + + + + +R I + Sbjct: 278 GHDIGDSVITYVVRHLESLALTECLVARYGGEEFAIFARENDFERVSQALDSVRDAI-SV 336 Query: 207 QINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ P + ++I A I E H+ ++ +AD+ALY AK+ GRNR++ Sbjct: 337 GFHVEQQPLKVSVSIGAVIFESSHE--YGEVLRQADKALYQAKQQGRNRIM 385 >gi|294010897|ref|YP_003544357.1| putative signal transduction protein [Sphingobium japonicum UT26S] gi|292674227|dbj|BAI95745.1| putative signal transduction protein [Sphingobium japonicum UT26S] Length = 895 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 13/177 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNE--KLSIVFFDIDY 138 SG+ L E+ S +++L++ D L+GL N + SL G + +++ D+D Sbjct: 353 SGTDLTEMRRSQAEVTRLAQYDSLTGLANRVQMMRSLEQAVAGKKGQPRDCTLMMLDLDR 412 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +ND GHP GD ++ +S+++ V G VGR GG+EF G ++ +L + Sbjct: 413 FKIVNDTLGHPAGDALLRQVSERIQRVVGNKGLVGRQGGDEFKILLPGRPDK--IMLDHL 470 Query: 199 LRKIIEN-SQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGR 252 R II + SQ + G ++ I +S GI+ C ++ ++ +I AD ALY AK GR Sbjct: 471 ARAIITDVSQPYMVEGTAVVIGVSIGIS-FCPQDGVTADELIRNADLALYAAKGDGR 526 >gi|77458114|ref|YP_347619.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas fluorescens Pf0-1] gi|77382117|gb|ABA73630.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas fluorescens Pf0-1] Length = 1092 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 19/196 (9%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 + ++ T LLL S+LK + +I L+ D L+ L N + I+ L Sbjct: 632 ITLNETACLLLTARDVSLLKN---AEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKR 688 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-- 182 +N + +++F D+D+FK IND+ GHPVGD V+ ++ +L V RLGG+EF Sbjct: 689 HNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFVVLL 748 Query: 183 AALGSSEQEAAI----LANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237 + L + E + LA+ +R+++ S+ G + +T S G+A H + ++ Sbjct: 749 SGLEGTRNEVSAQVRELADTIRELL--SEPMFLDGQRLQVTPSIGVALIPDHGSTPTDLL 806 Query: 238 YRADQALYVAKKSGRN 253 RAD ALY AK SGRN Sbjct: 807 KRADIALYRAKDSGRN 822 >gi|298507295|gb|ADI86018.1| diguanylate cyclase, FeoA domain-containing [Geobacter sulfurreducens KN400] Length = 249 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 9/169 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHP 149 Y + + D L+G N A + Y EK S++ DID+FK+IND +GH Sbjct: 81 YEAVKVQAHYDNLTGCFNRHALEGIVRGEVLKYAEKRVPFSLLLADIDHFKKINDTYGHQ 140 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ +D L + R GGEEF G+ +EA+++A LR++IE S Sbjct: 141 EGDRVLKRFADLLRHGLRRSDVLCRWGGEEFLILLRGTLVEEASLIAERLRRMIEESIFP 200 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VC 257 + +T+S G ++ + AD ALY +K++GRNRV VC Sbjct: 201 PFPTEGL-VTVSMGGVGMPPGTDVNRLFAEADSALYTSKRAGRNRVTVC 248 >gi|264677814|ref|YP_003277720.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262208326|gb|ACY32424.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 397 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 124/245 (50%), Gaps = 22/245 (8%) Query: 28 MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87 +++ S+ F+ + T I ++ L Y F Y L+ +S++ +I +L++ I+ Sbjct: 153 LLWLSMIFTAYTLTRPMIISL-LGYPDPRSFPRSPYWLLTLVSILNFAILFTLVMTVIAT 211 Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 KE + ++ + +D L+ +LN +F ++ + Y ++++ DID+FK Sbjct: 212 ---KE---TVGKLQKERDLDTLTQILNRRSFHEYALKLLTDMRLY--PMAVLACDIDHFK 263 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND +GH GDKV+ +S L V R GGEEF + + ++A +A +R Sbjct: 264 RINDTWGHEYGDKVLQLVSATLQNHVRERDLVARFGGEEFVILLIDIALRDAEEIAQRIR 323 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV----V 256 + + +++ + SG +T+S GI+ + + ADQ LY AK +GR++V V Sbjct: 324 QDLRSNKDLLLSG--TKLTMSFGISSITDPSQLDHALREADQLLYQAKNAGRDQVHVSGV 381 Query: 257 CFSDI 261 + DI Sbjct: 382 SYPDI 386 >gi|260549050|ref|ZP_05823271.1| ggdef domain/eal domain-containing protein [Acinetobacter sp. RUH2624] gi|260407778|gb|EEX01250.1| ggdef domain/eal domain-containing protein [Acinetobacter sp. RUH2624] Length = 684 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + ++ LS D L+ L N +S ++K++ ++ D+D FK +ND Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH +GD+++ ++++L + R+GG+EF A + +EA LA + ++I+ Sbjct: 306 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLQLIQ 365 Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S QI SG I+I+ S GIA H + + ++ AD A+ ++K+ GRN FS Sbjct: 366 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 419 >gi|167624095|ref|YP_001674389.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167354117|gb|ABZ76730.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 434 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 96/192 (50%), Gaps = 11/192 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 SL+ S+ + + I G L ++I R S ID LSG F+S S + Sbjct: 252 SLLYNSLAVLICTLVIHGCFLTAVYIR--RFYVESSIDRLSGFYRKDGFMSKKMSVS--- 306 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-S 188 SI DID+FK+IND +GH VGD VI+ +++++ + R GGEEF G S Sbjct: 307 SICLIDIDHFKKINDVYGHIVGDIVISEVANRIKSSMRSTDLAIRWGGEEFVVIFNGELS 366 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 ++ + AN L II N IN I +TIS G + + + +D+ALY +K Sbjct: 367 FEQFSNKANGLLSIINNETIN-----DIAVTISIGAIYSQSEMKLQEAFHLSDEALYESK 421 Query: 249 KSGRNRVVCFSD 260 SGRN+V + + Sbjct: 422 NSGRNKVTIYRN 433 >gi|163802400|ref|ZP_02196294.1| Na(+)-translocating NADH-quinone reductase subunit F [Vibrio sp. AND4] gi|159173929|gb|EDP58743.1| Na(+)-translocating NADH-quinone reductase subunit F [Vibrio sp. AND4] Length = 404 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 5/155 (3%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +++ D L+ L N +E+ +I DID+FKQ+ND++GH GD V+ +++ Sbjct: 253 RMANQDALTSLWNRRFLFGQTNGKSEERNIAMLDIDFFKQVNDSYGHYGGDAVLVMVANI 312 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L + F + + RLGGEEF A G + L +R+ +E + + + SI +TIS Sbjct: 313 LKIYFPDDI-IARLGGEEFCIQAYGDYDDFVNRLEQ-MRQRVEKTPV-LYQESSIQVTIS 369 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + K + I AD LY AKK+GRN+ + Sbjct: 370 IGASNV--KGALDQQIKVADDRLYQAKKNGRNQTI 402 >gi|330959980|gb|EGH60240.1| response regulator, putative/diguanylate cyclase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 547 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + L N+ L DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRRENKPLCFAMLDIDHFKKVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 L F+GR GGEEFA + A + +++R ++I+ + P + Sbjct: 439 LFLKQRLRKADFIGRYGGEEFAVVMPDTDIHSAHKVLDEIRHRF--AEIHYPAQPVDLFC 496 Query: 219 TISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ C H + +S + +AD ALY AK +GRN+V Sbjct: 497 TFSAGVV--CLGPHDDSLS-LASQADIALYRAKHAGRNQV 533 >gi|330718374|ref|ZP_08312974.1| Signal transduction diguanylate cyclase [Leuconostoc fallax KCTC 3537] Length = 167 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 10/163 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA-- 156 Q S D L+GL N+ L Y N+ L I FD+DYFKQIND FGH G++++ Sbjct: 3 QNSYHDNLTGLFNYRKLEKDLSWYSQDNDNLGIAIFDLDYFKQINDEFGHLNGNQLLQHF 62 Query: 157 --FLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 FLS+ L G P+ + R GGEEF S + A+ L++ ++ + G Sbjct: 63 SEFLSEYLQYKNGNEPLNLYRYGGEEFVWIFDASHIGDLALFFESLQRQLKTMPWDEIDG 122 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+ S G+ H +S+++ AD+ LY AK +GR + Sbjct: 123 RT--ISFSGGVGLLRHHHDLSSVLRSADELLYQAKANGRAQTT 163 >gi|330821348|ref|YP_004350210.1| GGDEF domain protein [Burkholderia gladioli BSR3] gi|327373343|gb|AEA64698.1| GGDEF domain protein [Burkholderia gladioli BSR3] Length = 509 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 10/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 L+ + ++ +L R D L+GL N +F ++L LS++F DID FK Sbjct: 325 LRRRQRAEEQLRRLVRTDALTGLGNRRSFDTTLHVEWLRTQRTGRPLSLLFVDIDQFKAY 384 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND++GHP GD+V+ + L P V R GGEEF + + AA +R+ Sbjct: 385 NDHYGHPAGDEVLREVGRVLTRCAQRPSDDVARYGGEEFVVTLPDTDARGAAQFGERVRR 444 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRV 255 I + I ++ +T+S GI S + + AD ALY AK +GRNR+ Sbjct: 445 SIYDLAIPHAASHYGRVTVSIGIVTSGEAAASSDVAFVNLADTALYHAKTAGRNRI 500 >gi|296447498|ref|ZP_06889421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylosinus trichosporium OB3b] gi|296254965|gb|EFH02069.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylosinus trichosporium OB3b] Length = 825 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 21/168 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPV 150 RI+ L+ D L+GL N + F L E+L +++ D+D FK +ND +GHPV Sbjct: 391 RIAHLAHHDPLTGLANRTLFRLRLSEGLERLDETSAPGIGVLYLDLDGFKDVNDAYGHPV 450 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA----NDLRKI--IE 204 GD+++ ++++L + V R+GG+EFA G+ EA LA L + I+ Sbjct: 451 GDRLLVAVAERLRRLLPQGDLVARVGGDEFALVQCGADRDEAERLACVVVEALSRTYEID 510 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 Q+NI G S+ ++++ ++ T++ AD ALY AK GR Sbjct: 511 GHQVNI--GASVGVSVAPNDSDDA-----DTLLKNADIALYRAKADGR 551 >gi|332991743|gb|AEF01798.1| diguanylate cyclase [Alteromonas sp. SN2] Length = 547 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 12/147 (8%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L + DID FKQ+ND FGH +GD+V+ S +L VF ++ R GGEEF A A Sbjct: 377 LLVFILDIDDFKQVNDRFGHQIGDEVLIEFSKRLEHVFRQSDYIVRWGGEEFVAVARFVD 436 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAG------IAER---CHKEPISTIIYR 239 + A +LA L K I +++ + ++ IT S G I + CH E +I Sbjct: 437 RKSAMVLAQRLVKAINDTKFEMHDNTALPITCSVGYVCYPLIPTKVISCHLEK---LIEM 493 Query: 240 ADQALYVAKKSGRNRVVCFSDIENNTC 266 +D LY+AK SG+N V + + Sbjct: 494 SDACLYLAKASGKNTWVGLESVHDEEA 520 >gi|326794533|ref|YP_004312353.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326545297|gb|ADZ90517.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 454 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 6/129 (4%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ DID FK+IND FGH VGD V+ F + L+ + R+GGEEFA Sbjct: 328 SLIMLDIDCFKKINDQFGHQVGDAVLQFFASSLLQCLRKSDLLFRMGGEEFAVLLPQQPL 387 Query: 190 QEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAK 248 ++A +A +I+E+ I ++ I T+SAG++ + ++I+ RAD+ALY +K Sbjct: 388 EKATQVAE---RILES--IEMTDDDRIPPFTVSAGVSTYRSGDDDNSILTRADKALYQSK 442 Query: 249 KSGRNRVVC 257 +GRNRV Sbjct: 443 LNGRNRVTS 451 >gi|254295303|ref|YP_003061326.1| diguanylate cyclase [Hirschia baltica ATCC 49814] gi|254043834|gb|ACT60629.1| diguanylate cyclase [Hirschia baltica ATCC 49814] Length = 240 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 24/191 (12%) Query: 74 ISITISLLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124 + I+ + G IS + K L S ++ D L L N AF+ L Sbjct: 46 VRAAIAAMTGEISELRTKNKSLLKSLENAESMADHDALVPLFNRRAFVRELSRLIAFARR 105 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-- 182 Y S+++FD+D FK IND GH GDK++ +++ L+ +GRLGG+EF A Sbjct: 106 YGLDASVIYFDLDGFKSINDTHGHAAGDKILLAVAEVLIQQTRESDLLGRLGGDEFIAVL 165 Query: 183 --AALGSSEQEAAILANDLRKIIENSQINIS---SGPSIHITISAGIAERCHKEPISTII 237 S+ ++AA LA+++R NIS G + I S G+ H E I Sbjct: 166 TSVKPSSAREKAAQLADEIR--------NISIQHEGKLLSIDASFGVTTLEHDETAEIQI 217 Query: 238 YRADQALYVAK 248 R+D+A+Y AK Sbjct: 218 ARSDEAMYAAK 228 >gi|123440926|ref|YP_001004917.1| HmsT protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087887|emb|CAL10675.1| HmsT protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 366 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 23/248 (9%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILV---ENLSLVIISITISLLLGY------ 84 F+IF + I +++ FL + T L I + +N+ +I +I + L+ G+ Sbjct: 112 LFTIFFISTIALSDNFLAFCLHTAPAALTVIFLDDFQNIFRIIFTIMLPLI-GFSLHHLM 170 Query: 85 ------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134 + ++ L+ + S LS ID L+ L N + L + + ++ Sbjct: 171 LRRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYVLLL 230 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK NDN+GH +GD+ + ++ + + V R GGEEF SE+ A+ Sbjct: 231 DIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQ 290 Query: 195 LANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 LA +R+ + I + S +T+SAGI+ +++ + AD+ALY AKK GR Sbjct: 291 LAERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQPYDLASSLKAADEALYRAKKDGR 349 Query: 253 NRVVCFSD 260 N+V D Sbjct: 350 NKVAFAED 357 >gi|91223827|ref|ZP_01259091.1| hypothetical protein V12G01_18822 [Vibrio alginolyticus 12G01] gi|91191319|gb|EAS77584.1| hypothetical protein V12G01_18822 [Vibrio alginolyticus 12G01] Length = 506 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 8/160 (5%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D ++GLLN LG + N S++ DID+FK +NDN+GH VGD ++ + + Sbjct: 351 DSMTGLLNRRGLDKVLGLFKQENTAFSVLALDIDHFKSVNDNYGHDVGDNLLREFAQLMK 410 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + + R GGEEF + A +A +R +E + +T+S G Sbjct: 411 DQARSNDHLCRSGGEEFMMFLEKTDVNHAMDVAERIRHNVEQHDFQVVG----KVTVSLG 466 Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ + + PI ++ AD ALY AK +GRNR D + Sbjct: 467 VSHWKGNDTPIEAVMKDADNALYKAKHNGRNRTELGDDAQ 506 >gi|90581541|ref|ZP_01237334.1| putative c-di-GMP phosphodiesterase A-related protein [Vibrio angustum S14] gi|90437303|gb|EAS62501.1| putative c-di-GMP phosphodiesterase A-related protein [Vibrio angustum S14] Length = 690 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 17/172 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +I QL ++D L+GLLN F L + +++ DID FK IND+ GH +GDKV+ Sbjct: 263 QIEQLVQMDPLTGLLNRHGFTRQLDQLMKAETPVVMLYIDIDNFKNINDSLGHHIGDKVL 322 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP- 214 ++ +L + +G L G+EF A L + E E +II I + + P Sbjct: 323 QEIAQRLRRLLPETAILGYLSGDEF-AILLPNPEHERT------GEIISEQIIALVNQPF 375 Query: 215 -----SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 H+ S G + H ++ AD A+Y AK GRNR+V F+D Sbjct: 376 ELRHFRKHLACSIGMVTSPGHGNDARMMLQNADTAMYEAKHRGRNRLVEFND 427 >gi|254225339|ref|ZP_04918951.1| GGDEF family protein [Vibrio cholerae V51] gi|254286176|ref|ZP_04961136.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|297578957|ref|ZP_06940885.1| GGDEF family protein [Vibrio cholerae RC385] gi|125622180|gb|EAZ50502.1| GGDEF family protein [Vibrio cholerae V51] gi|150423845|gb|EDN15786.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|297536551|gb|EFH75384.1| GGDEF family protein [Vibrio cholerae RC385] Length = 392 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 18/225 (8%) Query: 41 TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF----IS 96 V+ I + Y+ + L + V S +++ +L I G++L LF I Sbjct: 170 AVVLAVMIVMLYVPFVAYQTLPLLAVFRASTIVVQ---NLFFFIILGTMLM-LFLFEEIE 225 Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGD 152 ++R+ + D L+G N F + ++ + DID+FKQIND++GH +GD Sbjct: 226 WHRLRSIQ--DELTGAFNRRHFKEQVQQKLKQSKQKSMVALVDIDHFKQINDSYGHDIGD 283 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 VI ++ L + T V R GGEEFA A + + + + +R I + ++ Sbjct: 284 SVITYVVRHLESLALTECLVARYGGEEFAIFARENDFERVSQALDSVRDAI-SVGFHVEQ 342 Query: 213 GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P + ++I A I E H+ ++ +AD+ALY AK+ GRNR++ Sbjct: 343 QPLKVSVSIGAVIFESSHE--YGEVLRQADKALYQAKQQGRNRIM 385 >gi|229505047|ref|ZP_04394557.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229511283|ref|ZP_04400762.1| GGDEF family protein [Vibrio cholerae B33] gi|229518401|ref|ZP_04407845.1| GGDEF family protein [Vibrio cholerae RC9] gi|229608051|ref|YP_002878699.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|229345116|gb|EEO10090.1| GGDEF family protein [Vibrio cholerae RC9] gi|229351248|gb|EEO16189.1| GGDEF family protein [Vibrio cholerae B33] gi|229357270|gb|EEO22187.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229370706|gb|ACQ61129.1| GGDEF family protein [Vibrio cholerae MJ-1236] Length = 358 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 I+V+NL II T+ +L + +E I ++R+ + D L+G N F + Sbjct: 167 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 216 Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ + DID+FKQIND++GH +GD VI ++ L + T V R GGEE Sbjct: 217 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 276 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238 FA A + + + + +R I + ++ P + ++I A I E H+ ++ Sbjct: 277 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 333 Query: 239 RADQALYVAKKSGRNRVV 256 +AD+ALY AK+ GRNR++ Sbjct: 334 QADKALYQAKQQGRNRIM 351 >gi|71736110|ref|YP_274174.1| sensory box protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556663|gb|AAZ35874.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 729 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 29/214 (13%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN---- 114 +G +L ++ + ++ T LL+ + + +L + ++ L+ D L+GL N Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGQLKTAQAQVQHLAYHDPLTGLPNCALL 301 Query: 115 ---HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L Sbjct: 302 MDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361 Query: 172 VGRLGGEEFAAAALG----SSE--QEAAILANDLRKIIENSQI----NISSGPSIHITI- 220 V RLGG+EF G E Q+ +LA++LR+++ + PSI I + Sbjct: 362 VARLGGDEFVVLICGLDGTRDEVIQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLI 421 Query: 221 -SAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G+A + ++ RAD ALY AK SGRN Sbjct: 422 PDDGLAP-------ADLLKRADIALYRAKDSGRN 448 >gi|283851062|ref|ZP_06368346.1| diguanylate cyclase with GAF sensor [Desulfovibrio sp. FW1012B] gi|283573458|gb|EFC21434.1| diguanylate cyclase with GAF sensor [Desulfovibrio sp. FW1012B] Length = 499 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N AF L Y+ +S++ DID+FK IND +GH VGD V+ + Sbjct: 322 DGLTRIHNRRAFDERLVEELRRHQRYHHPMSLLMLDIDHFKGINDTYGHLVGDHVLREVG 381 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + F R GGEEF ++E+++ +LA LR +I +++ + G IT Sbjct: 382 RLMTETLRSTDFTARYGGEEFVIILPQTAEEQSRVLAERLRGLIADARF-VHDGHPFSIT 440 Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255 +S G A ++ +AD+ALY AK GRN+V Sbjct: 441 VSIGAATLLPGALSKRKDLLDKADKALYQAKTLGRNQV 478 >gi|258627542|ref|ZP_05722319.1| GGDEF family protein [Vibrio mimicus VM603] gi|258580124|gb|EEW05096.1| GGDEF family protein [Vibrio mimicus VM603] Length = 525 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 108/196 (55%), Gaps = 24/196 (12%) Query: 76 ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSY 125 + ISLLLGYI+ +L+E L + L+ D L+G+ N +F +S++ + Sbjct: 314 VIISLLLGYITRLLLEEKTRLEEMLDERTAELRYLAEHDSLTGIYNRRSFNNLLSNMLNS 373 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + ++V FDID FKQIND+ GH VGD V+ ++ +L+ FV R+GG+EFA Sbjct: 374 GQPFTLVSFDIDCFKQINDSHGHLVGDGALVHVVNLVTQKLL---PNDHFV-RMGGDEFA 429 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYR 239 + + + + +R +E + + I+ G S+ +T+S G I+E ++ S +++ Sbjct: 430 ILSNVAGRETLSNYLESIRATVERNPLAINQG-SVALTVSIGACISEGLNE---SELLHS 485 Query: 240 ADQALYVAKKSGRNRV 255 D LY++K GRNRV Sbjct: 486 VDAQLYLSKTLGRNRV 501 >gi|237805276|ref|ZP_04591980.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026384|gb|EGI06439.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 226 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 EL + + + +++ D L+ L N F +SL N L+I+ DID+FKQ ND Sbjct: 38 ELNNTRHELEIIAQTDSLTNLANRRCFDASLQKEWGRASRNNSVLAIILLDIDWFKQYND 97 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199 +GH GD + Q+ + G+ + R GGEEF + A +A + Sbjct: 98 RYGHLKGDDCLM----QVAEILGSCINRSGDLAARYGGEEFVILLAETDLAGALSVAEKV 153 Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R IEN+ I S+ P ++TIS+G+ KE + AD+ LY AK GRNRV Sbjct: 154 RSAIENAFIEHSASPVGNLTISSGVVAISAPEKEDHKAALEEADRLLYSAKTKGRNRV 211 >gi|188535880|ref|YP_001905940.1| hypothetical protein ETA_pET460260 [Erwinia tasmaniensis Et1/99] gi|188027184|emb|CAO95016.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99] Length = 489 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 7/153 (4%) Query: 107 DCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ L N F Y E S+++ DIDYFK+IND +GH GD V+ ++ L Sbjct: 338 DPLTNLYNRRGFYFHSKYYQEINLHSVLYLDIDYFKKINDTYGHNTGDAVLCTIAIVLKK 397 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 F + R GGEEFA +S + A +A K+I ++ +T+SAG+ Sbjct: 398 NFRKEDILSRFGGEEFAFLLPRTSAKNAVNMAKKTLKMISTTEF----PHREKVTVSAGV 453 Query: 225 AERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 + K + + + +AD+ALY++KK+GRN V Sbjct: 454 SIVSEKTKGLEKALIKADKALYLSKKNGRNLVT 486 >gi|189424842|ref|YP_001952019.1| diguanylate cyclase [Geobacter lovleyi SZ] gi|189421101|gb|ACD95499.1| diguanylate cyclase [Geobacter lovleyi SZ] Length = 253 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 8/179 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +++ + + + ++ D L+G LN A I L+++ DID+FK+ Sbjct: 74 VVRPIKSHFETLRDMANYDQLTGCLNRHAANMILRHEIRRYADQELPLAVLMADIDHFKK 133 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND FGH GD+++ + + R GGEEF G+ E+EA +A+ +R+ Sbjct: 134 VNDTFGHTAGDQILKKFAQVAGSALRRCDMLCRWGGEEFLVLLRGTVEEEAFQIADRIRR 193 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +E+ + +T+S G A ++ AD+ALY AK +GRNRV SD Sbjct: 194 RVESITFPPYDACGL-LTVSIGSAALLPGGNFEQLVAEADKALYRAKHAGRNRVATISD 251 >gi|312883413|ref|ZP_07743139.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309369029|gb|EFP96555.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 411 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 21/169 (12%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+ + A S L + SI DID+FK ND++GH GD V+ ++ +L V Sbjct: 241 DNLTDIPGRLALESDLRHLGKVFSIAMVDIDHFKSFNDSYGHETGDDVLKLVASKLQKV- 299 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP--------- 214 G V R GGEEF G + +LR +E + N + P Sbjct: 300 GKKARVYRYGGEEFTILFKGREAPDTLSELEELRAALEEYDMVIRNKDARPKNDKVGSKQ 359 Query: 215 --------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ITIS G+A+ + ++ ++ AD ALY AKK+GRN+V Sbjct: 360 RKAKAKSNTVNITISIGVADNLDFDTVAEVMKAADNALYKAKKTGRNKV 408 >gi|288924112|ref|ZP_06418162.1| diguanylate cyclase [Frankia sp. EUN1f] gi|288344545|gb|EFC79024.1| diguanylate cyclase [Frankia sp. EUN1f] Length = 484 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 18/207 (8%) Query: 66 VENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLN--HS 116 +E + L+ + +SL + GS+ + EL I+ R+ QLS D L+GL N H Sbjct: 259 LEGIMLIAGQLAVSLDNARVYGSLERRVAERTEELAIANRRLEQLSVTDPLTGLANRRHL 318 Query: 117 AFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 I L + + L++ DID+FK ND+FGH GD+ + ++ L Sbjct: 319 GEILDLEWHRAQRQTTPLALAMIDIDHFKSYNDHFGHAAGDQCLQRVAACLAASTRDTDL 378 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE--RC 228 R GGEEFA G+ A+ +A+ LR + E ++ + + I +T+S G+ Sbjct: 379 TARYGGEEFAVVMPGADTGVASRIAHRLRSAVAELTEPHPLTTKRI-VTVSIGVVSIVPT 437 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRV 255 E ++ AD ALY AK GRN+V Sbjct: 438 STEETEALVELADSALYRAKSGGRNQV 464 >gi|295700166|ref|YP_003608059.1| diguanylate cyclase [Burkholderia sp. CCGE1002] gi|295439379|gb|ADG18548.1| diguanylate cyclase [Burkholderia sp. CCGE1002] Length = 531 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 24/196 (12%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128 + +S LL + L++ + + +L+ D L+GL N L N Sbjct: 323 VVVSWLLAFA----LRDKQRAQAALLRLASTDPLTGLSNRRVLDKRLDDEWMRARRDNRP 378 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 LS++F DID+FK+ ND +GH GD+V+ ++D + V + V R GGEEFA + Sbjct: 379 LSVLFIDIDHFKRFNDTYGHESGDEVLVAVADCIASVARRSVDLVARYGGEEFAVVLPDT 438 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--------IIYR 239 + Q A +A +R+ +E+ I +T+S G C ST ++ Sbjct: 439 TAQGAFAVAEQIRRKVESRVIVRGHEAPQAVTVSVG----CATARPSTADFANGLELLAA 494 Query: 240 ADQALYVAKKSGRNRV 255 AD LYVAK GRNR Sbjct: 495 ADAQLYVAKNEGRNRT 510 >gi|268680795|ref|YP_003305226.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268618826|gb|ACZ13191.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 477 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 16/173 (9%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFG 147 I ++ QL+ D L+ L N F +++ L+++ D+D FK++ND FG Sbjct: 308 IYQKQLVQLASEDALTKLYNRREFNEQFERFSKMHHKGQTSLALMLIDVDDFKEVNDTFG 367 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG----SSEQEAAILANDLRKII 203 H VGD+V+ L+ L + V R GGEEFA +G ++E+ A IL +I Sbjct: 368 HLVGDEVLVRLAQLLKENVRSSDIVARWGGEEFAILLVGVCIETTEEIAQILC---ERIK 424 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ + G ++ ++I G+ H E ++++ D ALY AKK+G+++VV Sbjct: 425 HDAVLQGILGRALSVSIGVGMFN--HLESQDGLVHKVDNALYAAKKAGKDQVV 475 >gi|15641384|ref|NP_231016.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121588016|ref|ZP_01677768.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121728539|ref|ZP_01681562.1| GGDEF family protein [Vibrio cholerae V52] gi|147673521|ref|YP_001216931.1| GGDEF family protein [Vibrio cholerae O395] gi|153819350|ref|ZP_01972017.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|153821345|ref|ZP_01974012.1| GGDEF family protein [Vibrio cholerae B33] gi|227081543|ref|YP_002810094.1| GGDEF family protein [Vibrio cholerae M66-2] gi|254848494|ref|ZP_05237844.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|298498544|ref|ZP_07008351.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|9655867|gb|AAF94530.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547757|gb|EAX57848.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121629203|gb|EAX61643.1| GGDEF family protein [Vibrio cholerae V52] gi|126510095|gb|EAZ72689.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|126521163|gb|EAZ78386.1| GGDEF family protein [Vibrio cholerae B33] gi|146315404|gb|ABQ19943.1| GGDEF family protein [Vibrio cholerae O395] gi|227009431|gb|ACP05643.1| GGDEF family protein [Vibrio cholerae M66-2] gi|227013289|gb|ACP09499.1| GGDEF family protein [Vibrio cholerae O395] gi|254844199|gb|EET22613.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|297542877|gb|EFH78927.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 392 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 I+V+NL II T+ +L + +E I ++R+ + D L+G N F + Sbjct: 201 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 250 Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ + DID+FKQIND++GH +GD VI ++ L + T V R GGEE Sbjct: 251 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 310 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238 FA A + + + + +R I + ++ P + ++I A I E H+ ++ Sbjct: 311 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 367 Query: 239 RADQALYVAKKSGRNRVV 256 +AD+ALY AK+ GRNR++ Sbjct: 368 QADKALYQAKQQGRNRIM 385 >gi|329903745|ref|ZP_08273606.1| hypothetical protein IMCC9480_1608 [Oxalobacteraceae bacterium IMCC9480] gi|327548225|gb|EGF32925.1| hypothetical protein IMCC9480_1608 [Oxalobacteraceae bacterium IMCC9480] Length = 527 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 16/169 (9%) Query: 100 ISQLSRIDCLSGLLNHSA----FISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 +S+L R D L+G LN F L + + S I D+D FK++ND GH GD Sbjct: 362 MSELVREDQLTGSLNRRGLDDVFDRELARADRRKSPLCIAMLDLDDFKRLNDTHGHVAGD 421 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQI 208 + + +L + T + R GGEEF + + Q L +L K +I Sbjct: 422 EALVYLVRVIKDTLRTMDVLARFGGEEFLILLPDTTMDDATQTVTRLQRELTK-----RI 476 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + I IT SAG+A R E ++ RAD ALY AK++G+NRVV Sbjct: 477 FMHNNERILITFSAGVALRKGNEDQVGMLKRADTALYQAKRAGKNRVVS 525 >gi|304396063|ref|ZP_07377945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pantoea sp. aB] gi|304356432|gb|EFM20797.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pantoea sp. aB] Length = 661 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 95/185 (51%), Gaps = 18/185 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140 SG+ + E + R+ L+ D ++GL N +A + + +++ +V+ D+D FK Sbjct: 219 SGTDITEERRAQERLRVLANTDTVTGLPNRNAIHQQISLALERAGHDETGVVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA---- 196 ++ND +GH GD+++ +S ++ G +GRLGG+EF A +S +AA+ A Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLGKDQTLGRLGGDEFVVLAEHTS--QAALEAMSSR 336 Query: 197 --NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 LR+ I + SG SI I + H E ++I AD A+Y AK++GR + Sbjct: 337 ILERLRQPFRIGLIEVYSGCSIGIAFAP-----LHGEDRESLIRNADTAMYHAKENGRGK 391 Query: 255 VVCFS 259 F+ Sbjct: 392 FCVFA 396 >gi|302877452|ref|YP_003846016.1| diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302580241|gb|ADL54252.1| diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 346 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 85/180 (47%), Gaps = 31/180 (17%) Query: 104 SRIDCLSGLLNHSAFISSL-----------------GSYNEKLS-------IVFFDIDYF 139 S D L+GLLN F ++L S++ K + DID+F Sbjct: 151 SETDTLTGLLNRRTFDNNLEKMLTECTDAEVQKIEINSHSRKPPSSELPHWLAVMDIDHF 210 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND FGH GD+V+ LS + F + R GGEEF + E +A+ + Sbjct: 211 KRINDEFGHLYGDEVLLLLSRCMRRNFRQTDKLFRFGGEEFVVVLDRTCEVDASKVLERF 270 Query: 200 RKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 R IE P + +TIS G K+ ST++ RADQALY AK+ GRN+ VCF Sbjct: 271 RTAIECYDF-----PQVGRVTISIGFTCLNGKDDPSTLVGRADQALYYAKEHGRNQ-VCF 324 >gi|294664742|ref|ZP_06730071.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605496|gb|EFF48818.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 930 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN + +++L +N + L++V D+D+FK +ND GH GD V+A + Sbjct: 765 DELTGLLNRAGILAALREMLLHAEHNGRPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 824 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ + +GR GGEE A G + L R I + I+ G +H+T Sbjct: 825 RRMDTLMRGDDRIGRYGGEELLALLPGLNLDATHRLDALHRGICGDYPID---GGWLHVT 881 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E + ++ RAD ALY AK+SGRNRV Sbjct: 882 CSVGVAWFQRGETLEQLLARADAALYRAKRSGRNRV 917 >gi|326318921|ref|YP_004236593.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375757|gb|ADX48026.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 396 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 31/217 (14%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118 L N++LV+ T++LL+ + + + +++ L++ D L+G+LN F Sbjct: 190 LAANVTLVLG--TVALLVAWRT--------EAEDKLRALAKTDALTGVLNRRGFDVRGRA 239 Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 ++ + +++ V D+D+FK++ND GH GD V+AF + L T GR+GG Sbjct: 240 LLAHALRHGLRVTAVMLDVDHFKRVNDTHGHGTGDHVLAFFARLLQDATRTGDVAGRIGG 299 Query: 178 EEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---- 232 EEFA A ++ A LR + P + SAG A P Sbjct: 300 EEFAVLLAHAPGDRAAESFDRRLRARLAADSPQALGFP---VGYSAGAATLDAAPPDPGT 356 Query: 233 ------ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 ++ ++ RAD ALY AK++GR R+ S + Sbjct: 357 VAVAPLLADLMARADAALYEAKRAGRGRMQVQSPAQG 393 >gi|114707083|ref|ZP_01439982.1| hypothetical protein FP2506_03489 [Fulvimarina pelagi HTCC2506] gi|114537633|gb|EAU40758.1| hypothetical protein FP2506_03489 [Fulvimarina pelagi HTCC2506] Length = 615 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 16/183 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 +E+ N + LSR D L+GL N A L + + +++ D+DYFK N Sbjct: 173 REVERRGNDLLALSRTDPLTGLYNRRATDEKLEGFWQDWLQNGQSFAVLLIDVDYFKAFN 232 Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLR 200 D++GH GD+ + L++ + F GR GGEEF L +E AI LA +R Sbjct: 233 DHYGHQDGDQCLVTLAEVFRGIAESNSCFAGRYGGEEF--IFLMGAEDPGAIVRLAESIR 290 Query: 201 KIIENSQINISSGP----SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + P S+ ++I + ++ + + ++ ADQALY AK GRNR+ Sbjct: 291 TAVLQLGLLHEKRPDGRKSVTVSIGSAMSHTSQGDAMDILVLAADQALYRAKDKGRNRIE 350 Query: 257 CFS 259 F Sbjct: 351 IFD 353 >gi|15643940|ref|NP_228989.1| pleD-related protein [Thermotoga maritima MSB8] gi|4981734|gb|AAD36259.1|AE001775_2 pleD-related protein [Thermotoga maritima MSB8] Length = 643 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 86/170 (50%), Gaps = 15/170 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 RI L+ D L+G+ N AF + L YN KLS VF D+D FK+IND+ GH V Sbjct: 477 ERILWLAERDSLTGVYNREAFENRLAYLINLSKRYNRKLSFVFIDLDDFKRINDSKGHLV 536 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQIN 209 GD+V+ ++L + VGRLGG+EF + A IL +++I E+ + Sbjct: 537 GDRVLKEFVNRLTSLLRKSDVVGRLGGDEFGIVLPETDRTGAEIL---MKRIEEHFREPV 593 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYV---AKKSGRNRV 255 + G + S GI+ E + ++ AD+ +Y+ +KK GR V Sbjct: 594 LVDGELFSVNFSYGISVFPEDGESVKELLKVADERMYMNKFSKKRGRENV 643 >gi|325928323|ref|ZP_08189522.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] gi|325541311|gb|EGD12854.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] Length = 317 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 19/180 (10%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-----------ISSLGSYNEKLSIVFFDIDYFKQI 142 F +Y + ++ D L+GL N F S L IV DID+FK++ Sbjct: 126 FQNYRSLLDDAQRDALTGLRNRKTFDDVILRLFAGGADSAAEQGVWLGIV--DIDHFKRV 183 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH GD+V+ ++ + F + R GGEEF G A L R Sbjct: 184 NDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRLA 243 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + P + +T+S GI E H IS ++ AD+ALY AK++GRNR ++++ Sbjct: 244 VAEHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAEL 298 >gi|325262491|ref|ZP_08129228.1| sensory box/GGDEF domain/EAL domain protein [Clostridium sp. D5] gi|324032323|gb|EGB93601.1| sensory box/GGDEF domain/EAL domain protein [Clostridium sp. D5] Length = 410 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 29/246 (11%) Query: 24 PHTFMIYFSIFFSI-FIATVIFIANIFLFYIGLTPFYGLEYILVEN-LSLVIISITISLL 81 P F++ F F++ F+ VI+++++ L + EN + +++ S+ Sbjct: 163 PALFILRFRQMFTVMFLVEVIYVSSVMQVKNKL---------MAENDIFNSVVAFIFSMT 213 Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDI 136 + ++ + E + +R +LS +D L+G+ N A +++ Y EK S ++F D+ Sbjct: 214 VAHVILKLRAEDHNTRSRYKRLSMLDSLTGIPNKKACENAIAHYLEKNSPSYSALLFLDL 273 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-- 194 D FK+IND+ GH GD+++ L F +GR+GG+EF + E A+ Sbjct: 274 DDFKKINDSIGHSAGDRLLEETGKLLFKSFRASDLIGRVGGDEFMILITDYHDTEDALKR 333 Query: 195 ----LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 L L++I++N I S SI ++AG + H T AD+ LY AK S Sbjct: 334 KCTALQRALQQIMQNYGIQTSC--SIGAILAAGQSLNFH-----TAYALADKCLYEAKAS 386 Query: 251 GRNRVV 256 G+N+ V Sbjct: 387 GKNKCV 392 >gi|313673992|ref|YP_004052103.1| response regulator receiver modulated diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672] gi|312940748|gb|ADR19940.1| response regulator receiver modulated diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672] Length = 435 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 13/190 (6%) Query: 77 TISLLLGYISGSILKELFISYNRIS----QLSRIDCLSGLLNHSAFISSLG-------SY 125 T S++L + K+L+ +RI+ Q++ D ++GL N + L Y Sbjct: 234 TESIMLRVTANIRTKKLYDYLDRINNELYQMATTDPMTGLYNRRYILEQLNILNYNFERY 293 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 S++ D+D FK IND +GH GDKVI + ++ FVGR GGEE Sbjct: 294 GTAFSVILMDLDKFKSINDTYGHDCGDKVIIDFAQRVKSSVRKTDFVGRFGGEELIVVLQ 353 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQAL 244 E+ + + I NS + S+ I T S G+ P I I RAD L Sbjct: 354 NIDEENLYKITKKILYSIRNSSVTYSNF-VISYTTSIGVKYCNSYYPNIDEYIKRADHLL 412 Query: 245 YVAKKSGRNR 254 Y+AK++GRNR Sbjct: 413 YLAKENGRNR 422 >gi|256032860|pdb|3I5B|A Chain A, Crystal Structure Of The Isolated Ggdef Domain Of Wpsr From Pseudomonas Aeruginosa gi|256032861|pdb|3I5B|B Chain B, Crystal Structure Of The Isolated Ggdef Domain Of Wpsr From Pseudomonas Aeruginosa Length = 179 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 12/161 (7%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L +LS++ D+DYFK ND FGH GD+ + ++ Sbjct: 6 DGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVA 65 Query: 160 DQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217 + + R GGEEFA G+S A +LA +R+ +E+ QI + P H Sbjct: 66 GAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSH 125 Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G++ + +I ADQALY AK +GRN+V Sbjct: 126 LTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 166 >gi|197337767|ref|YP_002157748.1| sensory box/ggdef family protein [Vibrio fischeri MJ11] gi|197315019|gb|ACH64468.1| sensory box/ggdef family protein [Vibrio fischeri MJ11] Length = 482 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 9/174 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEK--LSIVFFDIDYFKQI 142 LK+ ++ S+L+ D L+G+ N AF N+K S++ DID FK+ Sbjct: 306 LKKTRAQKDKYSELAYNDYLTGVNNRRAFEKQANKVFKTYQNDKQVFSLIMCDIDNFKEY 365 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH VGD++I S+ V RLGG+EF +++A ++A L+ + Sbjct: 366 NDKFGHDVGDQMITAFSEACSAQINQDDIVARLGGDEFIVLLHHKDKEQAVMVAESLQNV 425 Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 I + + + G + +T S G+A + ++ AD LY AK++GRN V Sbjct: 426 IRDLSV-LVDGQELSMTCSMGVATVSELTTSLHELLNIADTQLYKAKEAGRNCV 478 >gi|145300867|ref|YP_001143708.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142853639|gb|ABO91960.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 333 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 11/161 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 QL+ D L+G + + +++ LS++ D+D FKQIND+ GH GD+ Sbjct: 175 QLAETDALTGAASRYRLERDIQMECERAKRFHQPLSVIAMDVDDFKQINDSHGHAAGDQT 234 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + ++ + R GG+EF ++ +A +A+ LR++I S++ Sbjct: 235 LINIVARVQSHIREIDLLARWGGDEFMVVLPNTALADAWRVADKLRELIAQSRV----CE 290 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+AE EP+S ++ R D+ALY AK +G+N++ Sbjct: 291 QLDITLSFGLAEYRLNEPLSQLMVRVDRALYQAKLAGKNQI 331 >gi|194367449|ref|YP_002030059.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] gi|194350253|gb|ACF53376.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] Length = 524 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +++ SR D L+GLLN +L + + +I+ DID FK IND GH VGD I Sbjct: 362 LNRASRTDPLTGLLNRRGLQQALDALQVQGIPFAILALDIDRFKTINDAHGHDVGDAAIV 421 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++DQ+ + R GGEEF G + A LR+ I + P Sbjct: 422 HIADQMRRYSRDSDILCRAGGEEFLLLLPGIGTESARQAGERLRQHIADHPFE----PVG 477 Query: 217 HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 IT+S G+A H + + AD+ALY+AK+ GRNRVV + Sbjct: 478 TITVSLGVAHFPSFHVD-AEQALRLADKALYLAKEQGRNRVVVY 520 >gi|78046228|ref|YP_362403.1| putative signal transduction protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034658|emb|CAJ22303.1| putative signal transduction protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 326 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 19/180 (10%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-----------ISSLGSYNEKLSIVFFDIDYFKQI 142 F +Y + ++ D L+GL N F S L IV DID+FK++ Sbjct: 135 FQNYRSLLDDAQRDALTGLRNRKTFDDVILRLFAGGADSAAEQGVWLGIV--DIDHFKRV 192 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH GD+V+ ++ + F + R GGEEF G A L R Sbjct: 193 NDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRLA 252 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + P + +T+S GI E H IS ++ AD+ALY AK++GRNR ++++ Sbjct: 253 VAEHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAEL 307 >gi|86144454|ref|ZP_01062786.1| GGDEF family protein [Vibrio sp. MED222] gi|85837353|gb|EAQ55465.1| GGDEF family protein [Vibrio sp. MED222] Length = 338 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D + L N +F I +L + L ++ DID+FK ND +GH GD V+ ++ +L Sbjct: 182 DSTTTLYNRRSFDRDIETLCEAKQPLCLILLDIDHFKNFNDTYGHLFGDMVLKGIARKLK 241 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA S + A LA+ R+ +E I + SG + IT S Sbjct: 242 QMCREGISAYRFGGEEFAIIVPNKSLRIARQLADTNRRSLEKLSIKDRRSGQQVGSITAS 301 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE E ++I RAD+ LY AK GRNRV+ Sbjct: 302 FGVAELEPGESAQSLIERADKLLYEAKSLGRNRVM 336 >gi|318040733|ref|ZP_07972689.1| diguanylate cyclase [Synechococcus sp. CB0101] Length = 311 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 76/152 (50%), Gaps = 7/152 (4%) Query: 107 DCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+G LN L S +L+++ DID+FK IND GH GD V+ ++ L Sbjct: 161 DALTGALNRHWLDQHLESLRLCPELALLMVDIDHFKAINDTHGHSCGDAVLRAVATTLRH 220 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAG 223 + RLGGEEF + Q AA L LR+ ++ ++ S +TIS G Sbjct: 221 ALRPSDALVRLGGEEFLVICRQEASQAAAEGLGERLRQAVQ----HLQSDDLPPVTISIG 276 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +A R E + RAD ALY AK++ RNRV Sbjct: 277 VALRTPGEGWEAQLERADTALYRAKRNDRNRV 308 >gi|317487171|ref|ZP_07945972.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921572|gb|EFV42857.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 535 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 13/185 (7%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYF 139 L SG + +E ++ + LS D L+G+ N A ++ + L+++ D+D+F Sbjct: 356 LNTRSGQLAQE----RDQYADLSFRDALTGVYNRRALEETMERIPARTPLALLMLDLDFF 411 Query: 140 KQINDNFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 K ND FGH GD K +A + + ++ +F R GGEEF G+ + A +A Sbjct: 412 KNYNDRFGHQAGDAALKAVAQATQKALLRDSDRIF--RYGGEEFTIILAGAGQYSAMTVA 469 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNR 254 + + + + + +T+S GIA R E I ++ ADQALY AK SGRNR Sbjct: 470 QRILEEVAALDLVHPDSRTGKLTVSIGIAHRSFGEDADICEVLTHADQALYEAKTSGRNR 529 Query: 255 VVCFS 259 +V F Sbjct: 530 IVLFE 534 >gi|310780113|ref|YP_003968445.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] gi|309749436|gb|ADO84097.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] Length = 525 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 NE +SI D+D+FK ND +GH GD V+ + + L F + F+ R GGEEF + Sbjct: 388 NELISIAMIDVDHFKLYNDTYGHIQGDTVLMKIGEMLKSTFYSSDFIMRYGGEEFLVFSK 447 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQA 243 G + QE L N + N +I S G +T S GI A + + I AD Sbjct: 448 GKAAQEINRLINSFISNLRNEKIEHSKGIDGVVTASVGIYSAVPTKDDDLEEFIKIADSK 507 Query: 244 LYVAKKSGRNRVVCFS 259 LY AK++GRN+++ + Sbjct: 508 LYKAKETGRNKIIFYK 523 >gi|220933986|ref|YP_002512885.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. HL-EbGR7] gi|219995296|gb|ACL71898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. HL-EbGR7] Length = 803 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 9/159 (5%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N F ++S ++ +L++++FD+D FK IND+FGH GD V+ Sbjct: 381 LAEHDALTGLCNRHCFEQRLEKAMASAQRHHHRLALLYFDLDEFKAINDSFGHRAGDAVL 440 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ +L V + R+GG+EFA S +EA LA L + G Sbjct: 441 VRVASELAPVVRGGDMLARVGGDEFALLTQIDSIEEARSLAARLCGTVAKIPFRF-RGTG 499 Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253 + T S GIA H E ++ RAD A+Y AK G+N Sbjct: 500 VRSTASVGIAVYPEHGETTEDLVARADIAMYQAKGLGKN 538 >gi|74316170|ref|YP_313910.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans ATCC 25259] gi|74055665|gb|AAZ96105.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Thiobacillus denitrificans ATCC 25259] Length = 928 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 11/164 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N F L S +K+ +++FFD+D FK IND++GH G Sbjct: 497 RLVYLAERDALTGLYNRHRFQQELARTMLDSDRQKMQCAVMFFDLDEFKTINDSYGHRAG 556 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ ++ ++ + + RLGG+EFA + EA LA+ + I +QI Sbjct: 557 DALLIRVAGEISALVRRNEVLARLGGDEFAILLPALQDNEAEALADRVVHAI--AQIPFR 614 Query: 212 -SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253 G S+ +T S GIA H ++ RAD A+Y AK +G+N Sbjct: 615 FEGQSLRVTTSVGIAYYPAHAVDADDLVARADIAMYQAKDAGKN 658 >gi|237799659|ref|ZP_04588120.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022514|gb|EGI02571.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 398 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 25/187 (13%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137 + G +L+ + Y +R D L+ L N L S E+ ++I+ DID Sbjct: 221 LRGRLLQVQLLEY------ARTDALTRLFNRRYQDEVLTSVWERARKKQASVAIILLDID 274 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQL---VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 +FK NDN+GHP GD + L +++ G F R GGEE + + +A Sbjct: 275 HFKSYNDNYGHPQGDVCLKLLCNEIQRSATACGAMAF--RFGGEE-VLVLMNADAGQATK 331 Query: 195 LANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKS 250 +A L+ + ++ + + G H+TIS G+A P++ T+I AD ALY AK++ Sbjct: 332 MAETLKASVAALKLPHPAQGEGAHVTISLGVASAI--APLTTYDTLISAADDALYAAKRA 389 Query: 251 GRNRVVC 257 GRN V C Sbjct: 390 GRNAVFC 396 >gi|330875724|gb|EGH09873.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 730 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 21/209 (10%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---- 115 G +L ++ + ++ T LL+ + + +L + +I L+ D L+GL N Sbjct: 246 GAPLVLDVSVEFITLNNTACLLM---NARDIGQLKSAQAQIQHLTYHDPLTGLPNRALLM 302 Query: 116 ---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L V Sbjct: 303 DRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTV 362 Query: 173 GRLGGEEFAA---AALGSSEQ---EAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225 RLGG+EF GS EQ + +LA++LR ++ ++ G + +T S GI Sbjct: 363 ARLGGDEFVVLICGLDGSLEQVTHQVRVLADNLRVLL--AEPMFLDGHRLQVTPSVGIVL 420 Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRN 253 P + ++ RAD ALY AK SGRN Sbjct: 421 IPDDGLTP-ADLLKRADIALYRAKDSGRN 448 >gi|324006150|gb|EGB75369.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2] Length = 430 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++ISS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISSLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|302185396|ref|ZP_07262069.1| GGDEF [Pseudomonas syringae pv. syringae 642] Length = 298 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 108/232 (46%), Gaps = 19/232 (8%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG--- 87 S+FF FI + A I+L + L + V + L + + S LLG Sbjct: 45 MSVFFVKFIDYIAAAALIWLIMWEMD----LTAVGVNHAPLFYVFLISSTLLGGCLNATF 100 Query: 88 -SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFKQ 141 S++ + + +R +LS D L+ N A ++SL + EK S+ F D+D+FK Sbjct: 101 LSLVMQTMTARDRYQELSETDTLTHAPNRRALVASLNTALACAEKSSLWFAMIDLDHFKS 160 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND GH VGD V+ + L G F GRLGGEEF ++ +A +L + Sbjct: 161 INDTHGHDVGDNVLVGFATLLKGTKGLIAF-GRLGGEEFGVILSAANATDAVRALEELLR 219 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + + + + S G+A E ++ ++ AD+ LY AK++GR Sbjct: 220 LAQKDE-----AAQVPYSFSGGVASLSRVETVNDLLKEADENLYHAKRNGRK 266 >gi|227114228|ref|ZP_03827884.1| hypothetical protein PcarbP_14743 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 552 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 79/163 (48%), Gaps = 10/163 (6%) Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D ++ LLN S L + + +++ DID FK IND +GH VGD VI +LS + Sbjct: 394 DPMTELLNRRGLDSVLRYWQMGQKSFAVIALDIDRFKLINDTYGHDVGDNVIRYLSQLIR 453 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + R GGEEF + A +A LR+ +E S I + +ITIS G Sbjct: 454 TSSRDSDILCRSGGEEFLILLPETRLDVALSIAERLRQRMEESTIPVVG----NITISLG 509 Query: 224 IA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +A PI AD+ALY AK+ GRNRV+ S E Sbjct: 510 VALWEPGVSDMPIDRTFKLADEALYQAKQEGRNRVISASGNEQ 552 >gi|170733260|ref|YP_001765207.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] gi|169816502|gb|ACA91085.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] Length = 492 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 14/194 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I +SLLLG S L+ + + + L+R D L+GL N +F L + + Sbjct: 300 IALSLLLG----SQLRRRMRAESELVLLARTDGLTGLSNRRSFGEVLDNEWRRARRARSV 355 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 S++F D+D FK ND +GH GD +A ++ + P R GGEEF + Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 415 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALY 245 S+ AA +A +R I+ + + +T S G+A ++ +I AD+ALY Sbjct: 416 SQTGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQEGQPDAVIKAADEALY 475 Query: 246 VAKKSGRNRVVCFS 259 AK +GRN+V Sbjct: 476 YAKATGRNKVAALQ 489 >gi|116251719|ref|YP_767557.1| transmembrane GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256367|emb|CAK07448.1| putative transmembrane GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841] Length = 423 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 6/134 (4%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ D D+FK +ND +GH GD+V+ ++ +L + V R GGEEF A G+ Sbjct: 290 TVLIIDADHFKDVNDGYGHLQGDEVLKAIAARLGTTLRSSDRVFRFGGEEFVAVCPGTGH 349 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVA 247 +E +LA LR I S P IT+S G+A ++ I + ++ AD LY A Sbjct: 350 EEGLLLAERLRWTIATSVKTPDDSP---ITVSIGVAT-ADEDGIDFTAVLTAADGRLYAA 405 Query: 248 KKSGRNRVVCFSDI 261 KKSGRN VV S + Sbjct: 406 KKSGRNCVVGRSGV 419 >gi|110634808|ref|YP_675016.1| diguanylate cyclase [Mesorhizobium sp. BNC1] gi|110285792|gb|ABG63851.1| diguanylate cyclase [Chelativorans sp. BNC1] Length = 239 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 35/234 (14%) Query: 33 IFFSIFIATVIFIANIFLFYIGLTPFYGLEYI-LVENLSLVIISITISLLLGYISGSILK 91 IF+SIF + +F+ + I L Y L YI L +++ L+ ++ Sbjct: 22 IFYSIFFSDRLFLDLLLSGIIVLVVAYPLSYIFLTQSVRLMRMA---------------- 65 Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIND 144 I + SRID LS +LN +F+ + + ++ DID+FK IND Sbjct: 66 ------EEIERRSRIDDLSQVLNRKSFLDAADDLLAASSSPSGAGTFLYLDIDWFKTIND 119 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKII 203 GH +GD+VI + L VGRLGGEEF G E AA+ + ++ Sbjct: 120 ERGHAMGDEVIRRMGALLQSCVRHGDIVGRLGGEEFGIFLPAGDDEDAAAVYSRIAQRAK 179 Query: 204 E-NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E ++ + H+++SAG+ + + ++ AD+ LY AK GRNR++ Sbjct: 180 EIGQELGLD---DRHVSLSAGMISHRPGQGFNELMKLADKRLYRAKSKGRNRLI 230 >gi|217970320|ref|YP_002355554.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T] gi|217507647|gb|ACK54658.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T] Length = 1013 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 12/167 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPV 150 R+++L+ D L+GL N +F++ L + + +++ DID+FK +ND GHPV Sbjct: 841 RLAELAATDPLTGLPNRRSFLACLDAALDDARREPARGSALLMIDIDHFKHVNDTHGHPV 900 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--ILANDLRKIIENSQI 208 GD+V+ + + GRLGGEEFA LA LR+ +E + Sbjct: 901 GDEVLQHAARLIRGGLRQHDRAGRLGGEEFAVLLDDVDADTDTALTLAERLRRSVEAAPA 960 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++G ++ +TIS G+A +P + ++ AD ALY AK+ GRNRV Sbjct: 961 ATAAG-AVSLTISLGLALVSGGDP-ARVLGDADAALYRAKRGGRNRV 1005 >gi|78222060|ref|YP_383807.1| diguanylate cyclase [Geobacter metallireducens GS-15] gi|78193315|gb|ABB31082.1| diguanylate cyclase (GGDEF domain) [Geobacter metallireducens GS-15] Length = 411 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 24/171 (14%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL + A L + ++ D+D+FK+ ND +GH VGD+V+ ++ +L V Sbjct: 241 DELTGLPSRRALNEQLTWLGRRYTVAMVDVDHFKRFNDTYGHDVGDQVLRMVASKLRGVG 300 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SSGPS--------- 215 G V R GGEEF +E LR+ I + Q+ + + PS Sbjct: 301 GGGK-VYRYGGEEFTILFHRKEREEVLADLEGLRRTIADYQMRLRGTDRPSSSKEGKKLR 359 Query: 216 ---------IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+AE + P + +I ADQALY AK GRNRV Sbjct: 360 YGTGRGNATVSVTVSIGVAESSADRRRP-ADVIKAADQALYRAKGGGRNRV 409 >gi|28899140|ref|NP_798745.1| putative GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836823|ref|ZP_01989490.1| putative ggdef family protein [Vibrio parahaemolyticus AQ3810] gi|254229519|ref|ZP_04922933.1| ggdef domain protein [Vibrio sp. Ex25] gi|260364735|ref|ZP_05777322.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|260876775|ref|ZP_05889130.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|260898147|ref|ZP_05906643.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|260900338|ref|ZP_05908733.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|262393466|ref|YP_003285320.1| putative GGDEF family protein [Vibrio sp. Ex25] gi|28807364|dbj|BAC60629.1| putative GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749969|gb|EDM60714.1| putative ggdef family protein [Vibrio parahaemolyticus AQ3810] gi|151937984|gb|EDN56828.1| ggdef domain protein [Vibrio sp. Ex25] gi|262337060|gb|ACY50855.1| putative GGDEF family protein [Vibrio sp. Ex25] gi|308089065|gb|EFO38760.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|308091516|gb|EFO41211.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|308108576|gb|EFO46116.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|308115315|gb|EFO52855.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] Length = 306 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S+ID L+ + N F L + + + +++ FD+D+FK IND GH GD V+ Sbjct: 141 SQIDALTNIYNRRVFFEKLTEEVIKSQTPDYQSALLLFDLDFFKVINDKRGHDAGDYVLE 200 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+D + + R+GGEEFA +S A + ++R I+N Q I Sbjct: 201 TLADLVSHLLVKDEIFARVGGEEFAIILPETSLSAAKEVGEEVRSHIQNCQFEFEK-IEI 259 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +T+S G+ + E + AD+ALY AK++GRN V Sbjct: 260 PVTVSVGVVKIGRNETTKRLYAHADKALYAAKRNGRNCVATLD 302 >gi|262192379|ref|ZP_06050532.1| GGDEF family protein [Vibrio cholerae CT 5369-93] gi|262031732|gb|EEY50317.1| GGDEF family protein [Vibrio cholerae CT 5369-93] gi|327484042|gb|AEA78449.1| GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 385 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 I+V+NL II T+ +L + +E I ++R+ + D L+G N F + Sbjct: 194 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 243 Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ + DID+FKQIND++GH +GD VI ++ L + T V R GGEE Sbjct: 244 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 303 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238 FA A + + + + +R I + ++ P + ++I A I E H+ ++ Sbjct: 304 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 360 Query: 239 RADQALYVAKKSGRNRVV 256 +AD+ALY AK+ GRNR++ Sbjct: 361 QADKALYQAKQQGRNRIM 378 >gi|254436984|ref|ZP_05050478.1| cyclic diguanylate phosphodiesterase domain protein [Octadecabacter antarcticus 307] gi|198252430|gb|EDY76744.1| cyclic diguanylate phosphodiesterase domain protein [Octadecabacter antarcticus 307] Length = 686 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 10/187 (5%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVF 133 ++LL I S LKE + + L++ D L+ L N S S L + +++F Sbjct: 234 AILLTAIDVSELKE---ARDTARHLAQRDQLTNLHNRSYLQSYLEGREGRGDTAGCAVIF 290 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 FD+D FK IND +GH GD V+ ++ + V V RLGG+EF G S + Sbjct: 291 FDVDRFKLINDRYGHDAGDTVLKQIATRARAVLSPQDLVARLGGDEFVIVIDGDSSKATL 350 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252 L + R+ + I + I TIS GIA + ST++ +AD ALY +K+ GR Sbjct: 351 ELQVEKRRHAISKTI-LHDKTRIDATISVGIAGHSSDTDSFSTVMRQADIALYASKQGGR 409 Query: 253 NRVVCFS 259 N F+ Sbjct: 410 NCTTFFT 416 >gi|218779529|ref|YP_002430847.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218760913|gb|ACL03379.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 470 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 96/181 (53%), Gaps = 14/181 (7%) Query: 88 SILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDID 137 S+++++ + +R + + + +D L+ + N A+ L + S++ D+D Sbjct: 289 SLMRQVGEAQSRARILEEQAMVDALTEIPNRRAYEERLAQEWSRYQRSGSAFSMLMVDLD 348 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK IND FGH VGD + + L + F+ R GGEEF L + +E A++A Sbjct: 349 RFKSINDTFGHAVGDTCLQGVVSLLKPNLRSSDFLARFGGEEF-VIILPDTTREGAVMAG 407 Query: 198 D-LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + LRK +E + + G +++TIS G + R + + + R D+A+Y AK+SGRNR+ Sbjct: 408 EKLRKKVEKANF-VYDGEKVNVTISVGGTKVREADKDTNDLFIRLDEAMYQAKESGRNRM 466 Query: 256 V 256 + Sbjct: 467 I 467 >gi|71280714|ref|YP_267304.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71146454|gb|AAZ26927.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 589 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 12/201 (5%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125 V N+ L+I + ++L L + G+ L ++ R+ +L+ D L+G+ N F S Sbjct: 375 VVNIQLMISILMVTLALLVLWGA---RLLKAHKRVRELAEYDPLTGIYNRGHFTHVTNSA 431 Query: 126 -------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 + LS++ FD+D+FK++ND+FGH GD + + RLGGE Sbjct: 432 LKYCKNAQQDLSVIMFDLDHFKKVNDSFGHACGDWALKETIKVCQRIGRKNDIFARLGGE 491 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237 EF + A + A R IE I SG IT S G+ + + + ++ Sbjct: 492 EFCLVLTCCTIDVAMLRAEACRAAIEEI-ITEESGNDFSITASFGVTDIKRSGFTLDKLL 550 Query: 238 YRADQALYVAKKSGRNRVVCF 258 AD A Y +K +GRNRV F Sbjct: 551 ADADMAAYASKNAGRNRVTLF 571 >gi|66047902|ref|YP_237743.1| GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63258609|gb|AAY39705.1| GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 432 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 22/184 (11%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 Q++ D L+GL A + + D+D+FK+ ND GH VGD+V+ ++ + Sbjct: 240 QMAFRDELTGLPGRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASK 299 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210 L + R GGEEFA S E +R+ I + +I + Sbjct: 300 LSKITNGGGKAYRYGGEEFAIVFAAKSIDECMPHLEAIRETIASYEIQLRNKDNRPQDDQ 359 Query: 211 --------SSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + S+ +T+S G+AER H+ P ++ ADQALY AK +GRN VV + Sbjct: 360 QGRQRRSGAQAGSVSVTVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQ 418 Query: 261 IENN 264 + Sbjct: 419 LNRR 422 >gi|330970885|gb|EGH70951.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 424 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 22/184 (11%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 Q++ D L+GL A + + D+D+FK+ ND GH VGD+V+ ++ + Sbjct: 232 QMAFRDELTGLPGRRALNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASK 291 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210 L + R GGEEFA S E +R+ I + +I + Sbjct: 292 LSKITNGGGKAYRYGGEEFAIVFAAKSIDECMPHLEAIRETIASYEIQLRNKDNRPQDDQ 351 Query: 211 --------SSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + S+ +T+S G+AER H+ P ++ ADQALY AK +GRN VV + Sbjct: 352 QGRQRRSGAQAGSVSVTVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQ 410 Query: 261 IENN 264 + Sbjct: 411 LNRR 414 >gi|330447369|ref|ZP_08311018.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491560|dbj|GAA05515.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 675 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 17/180 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFG 147 +E+ I QL ++D L+GLLN F L + + +++ DID FK IND+ G Sbjct: 240 QEIKRQQGHIEQLVQMDPLTGLLNRHGFTRQLEQLMKAEVPVVMLYIDIDNFKNINDSLG 299 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GDKV+ ++ +L + +G L G+EF A L + E E +II Sbjct: 300 HHIGDKVLQEIAQRLRRLLPETAIIGYLSGDEF-AILLPNPEHERT------GEIISEQI 352 Query: 208 INISSGP------SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I + + P H+ S G + H ++ AD A+Y AK GRNR+V F+D Sbjct: 353 IALVNQPFELRHFRKHLACSIGMVTSPGHGSDARMMLQNADTAMYEAKHRGRNRLVEFND 412 >gi|308186989|ref|YP_003931120.1| hypothetical protein Pvag_1481 [Pantoea vagans C9-1] gi|308057499|gb|ADO09671.1| Uncharacterized protein yciR [Pantoea vagans C9-1] Length = 661 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 18/185 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140 SG+ + E + R+ L+ D ++GL N +A + S ++ +V+ D+D FK Sbjct: 219 SGTDITEERRAQERLRVLANTDTVTGLPNRNAIHQQISLALERSEGDETGVVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA---- 196 ++ND +GH GD+++ +S ++ G +GRLGG+EF A +S +AA+ A Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLGKDQTLGRLGGDEFVVLAEHTS--QAALEAMSSR 336 Query: 197 --NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 LR+ I + SG SI I + H + ++I AD A+Y AK++GR + Sbjct: 337 ILERLRQPFRIGLIEVYSGCSIGIAFAP-----LHGDDRESLIRNADTAMYHAKENGRGK 391 Query: 255 VVCFS 259 F+ Sbjct: 392 FCVFA 396 >gi|87119403|ref|ZP_01075301.1| GGDEF domain protein [Marinomonas sp. MED121] gi|86165794|gb|EAQ67061.1| GGDEF domain protein [Marinomonas sp. MED121] Length = 410 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 15/199 (7%) Query: 77 TISLLLG----YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSY 125 T S +LG ++ I+K + I + D L+ L+N F + + Sbjct: 211 TSSFILGAILLFMIHRIMKSRDAATQEIHYFAHFDPLTKLINRRYFFELFDQALDEQNNT 270 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 L + D+D FK +ND GH GDK + ++ L V VGR GG+EF + Sbjct: 271 KPPLQLCICDLDQFKGVNDTLGHQAGDKALIKFAEILSEVMTNQGIVGRFGGDEFVICFI 330 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPIST--IIYRAD 241 S QE L +R +E + + + S IT + G+A E K +S + AD Sbjct: 331 DKSRQECENLLETIRARLEKTVFTLDNASSFSITGTFGVAHLEGGQKTKLSMNHLFETAD 390 Query: 242 QALYVAKKSGRNRVVCFSD 260 +ALY+AK++GRN+V ++ Sbjct: 391 KALYIAKQNGRNQVCLLNE 409 >gi|323966974|gb|EGB62400.1| GGDEF domain-containing protein [Escherichia coli M863] Length = 479 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 23/165 (13%) Query: 107 DCLSGLLNHSAFISSLGSYN---EKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + L + + +K S ++ DID+FK++ND +GHPVGD+VI Sbjct: 309 DPLTNIFNRNYFFNELKAQSASAQKTSYCVMIMDIDHFKKVNDTWGHPVGDQVI----KT 364 Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212 +V + G + + R+GGEEF + + A +LA +R +E N + I Sbjct: 365 VVSIIGKSIRPNDLLARVGGEEFGVLLTETDTESAKVLAERIRANVERLTGDNPEYAIPQ 424 Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 + I+I A + + P IYR AD ALY AK++GRN++V Sbjct: 425 --KVTISIGAVVTQGSALNPNE--IYRMADNALYEAKETGRNKIV 465 >gi|315185415|gb|EFU19187.1| diguanylate cyclase [Spirochaeta thermophila DSM 6578] Length = 385 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 27/229 (11%) Query: 46 ANIFLFYIGLTPFYGL----EYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101 A I + IG+ YGL + +L E+ + ++ I L+G++S S+ N I Sbjct: 147 AEILVPVIGMGGVYGLIVFGKKVLGEDYTPQELAY-IGRLVGFVSISL-------QNNIH 198 Query: 102 QLSRI-DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 S I D +G+ N S F+ L Y L ++ D+D+FK ND +GH GD+ Sbjct: 199 YRSSIMDFKTGIYNASFFMRRLEEELYRVKRYGGHLGLIILDVDHFKLFNDRYGHLAGDE 258 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ ++ + R GGEEF G++ A I+A +R IE ++ Sbjct: 259 VLISIARDIKQNLRKGDVAARYGGEEFVVLLPGANRNAAYIVAERVRHSIELMKVYFED- 317 Query: 214 PSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRVVCF 258 +H+T+S G+ C + +P +I ADQALY++K+ GRNR + Sbjct: 318 KILHVTVSVGVTS-CTRYRLLDP-RKLIEEADQALYLSKERGRNRTTVY 364 >gi|313683143|ref|YP_004060881.1| response regulator receiver modulated diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313156003|gb|ADR34681.1| response regulator receiver modulated diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 310 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 11/179 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L + + + LSRID L+ + N F + ++ ++I+ D+DYFK+ ND+ Sbjct: 126 LKLKGDWLEDLSRIDGLTHIPNRRYFDEEYQKKCKEMIREHKTVAILMIDVDYFKRYNDH 185 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+ + ++ L P V R GGEEF + AA +A +L K + Sbjct: 186 YGHGKGDECLIKIAGALKSSLKRPSDMVARYGGEEFIVILQNIDHEGAANVAQNLIKAVS 245 Query: 205 NSQINIS-SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSD 260 + I S + H+TIS G+A + E + T ++ AD ALY AK+ GRN++V F + Sbjct: 246 DLGIKHEYSSTADHVTISLGMAFKPADEKVCTEELLKTADDALYRAKEGGRNQLVIFEN 304 >gi|291549868|emb|CBL26130.1| diguanylate cyclase (GGDEF) domain [Ruminococcus torques L2-14] Length = 376 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 24/241 (9%) Query: 29 IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88 I+F F ++ I+T + + ++ L + + +++V+ L I + + + Sbjct: 139 IFFDSFRNLKISTFLMV------FLMLAFCFTIRHLIVKPLISYNECIRLGEIFPVLGAV 192 Query: 89 ILKELFISYNRI-------SQLSR----IDCLSGLLNHSAFISSLGSY-----NEKLSIV 132 L+ L ++YN++ QL R D L+ N +F L Y N +++ Sbjct: 193 ELQNLAVTYNQVYRENQQTQQLIRHQAEYDALTDCFNRRSFNKFLSLYETDAENHPFALI 252 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID FK +ND +GH +GD ++ ++D L F +V R+GG+EFA + + Sbjct: 253 LIDIDVFKSVNDTYGHAIGDVILKKVADYLKAAFRNNDYVCRIGGDEFAILMVEMTTDLQ 312 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 + N + + N Q++ +++SAG+A + P I AD+ALY K +GR Sbjct: 313 YTIKNKIDSV--NQQLSSPEKGIPKVSLSAGVAFSDRENPGENIFEDADKALYKVKGNGR 370 Query: 253 N 253 N Sbjct: 371 N 371 >gi|239618376|ref|YP_002941698.1| diguanylate cyclase [Kosmotoga olearia TBF 19.5.1] gi|239507207|gb|ACR80694.1| diguanylate cyclase [Kosmotoga olearia TBF 19.5.1] Length = 899 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 16/185 (8%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVF 133 L+GY+ +L +F +Y R + ++ D L+GL F S L + E+ S++ Sbjct: 717 LMGYLE-PLLTLVFRNYMRYTMATK-DALTGLYTRWYFESRLEEEFARSKRFGEEFSVIM 774 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D FK +ND+ GH VGD+++ ++ L+ VGR GGEEF + ++A Sbjct: 775 CDLDNFKVVNDSHGHIVGDEILKKIAKILLKGAREMDIVGRYGGEEFIILLPYAKHRDAV 834 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSG 251 +A L+++IE ++ ++ +T S G+A H + +++ ADQ Y+AKK G Sbjct: 835 RVAERLKELIEANKESLKD-----VTASFGVASYPAPHINNAADLLFCADQRCYLAKKLG 889 Query: 252 RNRVV 256 +NRVV Sbjct: 890 KNRVV 894 >gi|310641977|ref|YP_003946735.1| response regulator receiver protein [Paenibacillus polymyxa SC2] gi|309246927|gb|ADO56494.1| Response regulator receiver protein [Paenibacillus polymyxa SC2] Length = 374 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 12/203 (5%) Query: 69 LSLVIISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGS 124 L+L+I + LL+ Y + +EL IS IS++S D L+ L NH F Sbjct: 173 LALIIQASGRDLLVDLYKTKRAQQELMISNAIISKMSMTDGLTKLYNHLSFQNFYEKALE 232 Query: 125 YNEKLSIV---FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 Y E+ +I+ DID FK+IND +GH GDK++ +S + R GGEEFA Sbjct: 233 YAEQGAIIHLALVDIDNFKKINDTYGHQFGDKILEGISQIITEQITANDIPARYGGEEFA 292 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI---AERCHKEPISTIIY 238 + +EA + ++R+ +E + +T+S G+ E +K+ Sbjct: 293 ILMFEHTFEEAYQIVENIRREVEKMTFQ-EKMQIVSVTVSIGLKSYTEDMNKDK-DVFFQ 350 Query: 239 RADQALYVAKKSGRNRVVCFSDI 261 D LY AK+SG+N++V I Sbjct: 351 ETDDYLYQAKRSGKNKIVALDHI 373 >gi|261210656|ref|ZP_05924948.1| GGDEF family protein [Vibrio sp. RC341] gi|260840141|gb|EEX66721.1| GGDEF family protein [Vibrio sp. RC341] Length = 440 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 12/161 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L + S++F D+DYFKQIND +GH +GD + Sbjct: 269 EMAHRDALTGAINRHGIRDWLQEQARLVRWQLNQCSVLFIDLDYFKQINDVYGHTLGDDL 328 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + L + R GGEEF + ++A LA LR +EN I G Sbjct: 329 LREFALVLNREIRESDRLVRWGGEEFVVFCSQTHLEQAVELAERLRGCVENHHW-IHGGD 387 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S GIA+ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 388 ---LTCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 424 >gi|256375828|ref|YP_003099488.1| diguanylate cyclase [Actinosynnema mirum DSM 43827] gi|255920131|gb|ACU35642.1| diguanylate cyclase [Actinosynnema mirum DSM 43827] Length = 527 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 9/173 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDN 145 ++++L S R+ + D L+GL N + F L + + ++++F D+D FK++NDN Sbjct: 344 LVEQLRDSRERLRHQAYHDPLTGLPNRALFRERLAAALCADGPIALLFIDVDGFKEVNDN 403 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD V+ ++ +L V RLGG+EF G + + + LR ++ Sbjct: 404 YGHAEGDAVLRIVAQRLQRCVRECDTVARLGGDEFGVLIEGDAPPD-EVGRRVLRVLVAP 462 Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 + + I S GIA R H +P++ ++ AD A+Y AK+ G+ VV Sbjct: 463 HRTALG---EHRIRASVGIARRAHGQPVAPDDLLGDADAAMYAAKRLGKGIVV 512 >gi|255745759|ref|ZP_05419707.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262158963|ref|ZP_06030075.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|262169322|ref|ZP_06037014.1| GGDEF family protein [Vibrio cholerae RC27] gi|255736834|gb|EET92231.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262022135|gb|EEY40844.1| GGDEF family protein [Vibrio cholerae RC27] gi|262029148|gb|EEY47800.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] Length = 385 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 I+V+NL II T+ +L + +E I ++R+ + D L+G N F + Sbjct: 194 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 243 Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ + DID+FKQIND++GH +GD VI ++ L + T V R GGEE Sbjct: 244 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 303 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238 FA A + + + + +R I + ++ P + ++I A I E H+ ++ Sbjct: 304 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 360 Query: 239 RADQALYVAKKSGRNRVV 256 +AD+ALY AK+ GRNR++ Sbjct: 361 QADKALYQAKQQGRNRIM 378 >gi|254474323|ref|ZP_05087712.1| transcriptional regulator [Pseudovibrio sp. JE062] gi|211956598|gb|EEA91809.1| transcriptional regulator [Pseudovibrio sp. JE062] Length = 427 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 18/175 (10%) Query: 98 NRISQLSRI---DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147 +RI++L+ + D ++GL N +++ ++ + DID FKQIND FG Sbjct: 251 DRITELTEMAHRDPMTGLFNRRHLYNTVDKLHKDQIRAGKAMRYAMIDIDRFKQINDKFG 310 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIE 204 H GD +I ++ ++ + R+GG+EF A E + ++LR + + Sbjct: 311 HETGDNLIISVAHRISDLLPPKSVAVRIGGDEFCVALPDIDEPTSKQFLSELRSSMPVTD 370 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + P+I + +SAG H++ +++ + AD+ LY AKKSGRNR+V S Sbjct: 371 PGNDEHTFAPTISVGLSAG-----HEDSMASALRVADRCLYRAKKSGRNRIVTSS 420 >gi|186681989|ref|YP_001865185.1| diguanylate cyclase with PAS/PAC and GAF sensors [Nostoc punctiforme PCC 73102] gi|186464441|gb|ACC80242.1| diguanylate cyclase with PAS/PAC and GAF sensors [Nostoc punctiforme PCC 73102] Length = 888 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 25/177 (14%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGD 152 + +L+ +D L+ + N F L + +L S++ FD+D+FK+ ND +GH GD Sbjct: 713 LQRLATLDGLTQIANRRRFDQYLENEWHRLKREQMPLSLILFDVDFFKRYNDTYGHLAGD 772 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDLRK-----IIEN 205 + L L V P V R GGEEF A L ++E E AI +A +R+ II + Sbjct: 773 DCLRQLGSALKSVIKRPADLVARYGGEEF-AVILPNTEIEGAISVAQTIRQAVYDLIIPH 831 Query: 206 SQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV--VC 257 +Q ++ +T+S G+A C P +I AD++LY+AK+ GR+RV VC Sbjct: 832 AQSSVCD----RVTVSLGVASIVPNCETSP-QDLINAADKSLYIAKQQGRDRVHTVC 883 >gi|307295045|ref|ZP_07574887.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] gi|306879519|gb|EFN10737.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] Length = 868 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 13/177 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNE--KLSIVFFDIDY 138 SG+ L E+ S +++L++ D L+GL N + SL G + +++ D+D Sbjct: 326 SGTDLTEMRRSQAEVTRLAQYDSLTGLANRVQMMRSLEQAVAGKRGQPRDCTLMMLDLDR 385 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +ND GHP GD ++ +S+++ V G VGR GG+EF G ++ +L + Sbjct: 386 FKIVNDTLGHPAGDALLRQVSERIQRVVGDKGLVGRQGGDEFKILLPGRPDK--IMLDHL 443 Query: 199 LRKIIEN-SQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGR 252 R II + SQ + G ++ I +S GI+ C ++ ++ +I AD ALY AK GR Sbjct: 444 ARAIITDVSQPYLVEGTAVVIGVSIGIS-FCPQDGVTAEELIRNADLALYAAKGGGR 499 >gi|238756942|ref|ZP_04618130.1| Diguanylate cyclase [Yersinia aldovae ATCC 35236] gi|238704772|gb|EEP97301.1| Diguanylate cyclase [Yersinia aldovae ATCC 35236] Length = 357 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 3/164 (1%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +Y + + ID L+ L N ++ ++++ + + ++ DID+FK IND +GH GD Sbjct: 171 TYFTMKDRANIDKLTQLNNRASADYRLATIHNRRQACGLMILDIDHFKSINDTYGHDCGD 230 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ + L F+GR GGEEF Q +A +R+ +E+ + + Sbjct: 231 IVLTTVGALLSHAVRDEDFIGRYGGEEFIVITRSYDPQTIKSVAERIRERVESLDVLLPD 290 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I TIS G + + + D+ALY AK+ GRN+VV Sbjct: 291 GRKIKATISIGASLYLPGMSMLKALKMTDEALYQAKRQGRNQVV 334 >gi|134096457|ref|YP_001101532.1| putative GGDEF family protein [Herminiimonas arsenicoxydans] Length = 328 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 29/190 (15%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------------NEKLS---------I 131 ++ +Y + S D L+GLLN F NE+ + Sbjct: 119 VYRNYQSLLDYSERDSLTGLLNRKTFDEKFARMVNAKPADSAPHGNEERRHHTDVKSQWL 178 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID+FK++ND FGH GD+V+ +++ L F V R GGEEF ++ + Sbjct: 179 AVIDIDHFKRVNDVFGHLYGDEVLILVANVLRASFRAQDRVFRFGGEEFVILLRSTTLAD 238 Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 A ++ R+ IE+ P + IT+S G A H+ P+ TI+ ADQALY AK Sbjct: 239 AQMVFERFRENIEHYAF-----PQVGKITVSIGFASIGHETPV-TILGHADQALYYAKDH 292 Query: 251 GRNRVVCFSD 260 GRN+ VC+ D Sbjct: 293 GRNQ-VCYYD 301 >gi|117620507|ref|YP_855273.1| diguanylate cyclase/phosphodiesterase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561914|gb|ABK38862.1| diguanylate cyclase/phosphodiesterase domain 2 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 334 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 5/157 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 +++QL+ D L+GLLN +A E +I F D+D FKQ+NDN GH GD+++ Sbjct: 153 QQLAQLAHRDPLTGLLNRTALQRQFPQ--EYQAICFIDLDDFKQVNDNLGHRAGDELLIA 210 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ +L + +GRLGG+EF S + + LA I ++ + +G Sbjct: 211 LTRRLRDCCEEGVKIGRLGGDEFVLLLPWTSDDPRTSHLARQCINAI-STPFELPNG-DA 268 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + +S GIA ++ ST + RADQA+Y K+SG+ Sbjct: 269 SVGLSMGIAAIRPQDDFSTALARADQAMYRVKRSGKQ 305 >gi|94263690|ref|ZP_01287498.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93455889|gb|EAT06048.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] Length = 303 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 13/162 (8%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G+ N F S + LS++ DID+FK NDN+GH GD + + Sbjct: 139 LDGLTGIANRRNFDLALEREWSRAQRSAQPLSLLLLDIDFFKPYNDNYGHGPGDDTLRRV 198 Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI 216 + L P R GGEEF + + A +A ++R+ I I + S + Sbjct: 199 ATGLQQSLSRPADLAARYGGEEFVCLLPETDREGAQKMAEEVRRTIAGLAIPHAHSQVAD 258 Query: 217 HITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 HIT+S G IA + P + ++ ADQALY AK+SGRNRV Sbjct: 259 HITVSVGAASIAPNGNGNP-AQLLESADQALYQAKESGRNRV 299 >gi|218676105|ref|YP_002394924.1| GGDEF family protein [Vibrio splendidus LGP32] gi|218324373|emb|CAV25746.1| GGDEF family protein [Vibrio splendidus LGP32] Length = 345 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D + L N +F I +L + L ++ DID+FK ND +GH GD V+ ++ +L Sbjct: 189 DSTTTLYNRRSFDRDIETLCEAKQPLCLILLDIDHFKNFNDTYGHLFGDMVLKGIARKLK 248 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HITIS 221 + + R GGEEFA S + A LA+ R+ +E I + SG + IT S Sbjct: 249 QMCREGISAYRFGGEEFAIIVPNKSLRIARQLADTNRRSLEKLSIKDRRSGQQVGSITAS 308 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+AE E ++I RAD+ LY AK GRNRV+ Sbjct: 309 FGVAELEPGESAQSLIERADKLLYEAKSLGRNRVM 343 >gi|89093543|ref|ZP_01166491.1| PAS:GGDEF protein [Oceanospirillum sp. MED92] gi|89082233|gb|EAR61457.1| PAS:GGDEF protein [Oceanospirillum sp. MED92] Length = 438 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 10/170 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 EL ++ ++ D L+G+ N + L N +SI+ D+D+FK IND +G Sbjct: 268 ELKEKNRQLKHMAMHDELTGIANRRSAKLYLDELLSPTNPLISILMIDVDHFKNINDTWG 327 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+ L +L + R GGEEF + A +A LR ++E S Sbjct: 328 HSEGDQVLQGLVAELNTYLRAADMLARWGGEEFICILPDTGVSAAESVAEKLRSVVEKSL 387 Query: 208 INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ +TIS G+A + I ++ AD ALY AK GRNRVV Sbjct: 388 LGKAT-----VTISIGVASTEFGQMQIDQLLRCADHALYAAKSDGRNRVV 432 >gi|323968371|gb|EGB63778.1| diguanylate cyclase domain-containing protein [Escherichia coli M863] gi|327253087|gb|EGE64741.1| cellulose synthesis regulatory protein [Escherichia coli STEC_7v] Length = 564 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 19/201 (9%) Query: 74 ISITISLLLG----------YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122 ISI ++LL Y+ ++ +++ + + + D L+ L N A Sbjct: 358 ISIALTLLWALFTSMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTHLYNRGALFEKAR 417 Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 ++ S++ D+D+FK IND FGH GD+V++ + + GR+G Sbjct: 418 QLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRALDVAGRVG 477 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234 GEEF G++ +AA +A +R + ++ I+ +I I+ S G+ +E Sbjct: 478 GEEFCVILPGANLAQAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFE 537 Query: 235 TIIYRADQALYVAKKSGRNRV 255 + AD+ LY+AK++GRNRV Sbjct: 538 QLQSLADRRLYLAKQAGRNRV 558 >gi|269968236|ref|ZP_06182265.1| GGDEF family protein [Vibrio alginolyticus 40B] gi|269827159|gb|EEZ81464.1| GGDEF family protein [Vibrio alginolyticus 40B] Length = 466 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 20/166 (12%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G +N A L + ++ SI++ D+D FK++ND FGH +GD Sbjct: 296 AELAHRDALTGAMNRYAVQHWLEQQSRQVRWGHNTFSILYLDLDKFKKVNDKFGHQMGDD 355 Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 ++ + V+V T ++ R GGEEF ++ ++A A +RK +E+ Sbjct: 356 ILR----EFVMVVATSIYSDDRLVRWGGEEFVVFCPDTNIEQALEKAEMIRKNVEDHL-- 409 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G S +T S G+A+ E +S + RAD+ LY AK++GRNRV Sbjct: 410 WVHGES--LTCSIGVAQ-MQNERVSETMARADEVLYQAKRNGRNRV 452 >gi|264679145|ref|YP_003279052.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262209658|gb|ACY33756.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 522 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 12/180 (6%) Query: 90 LKELFISYN-RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 ++E + N + +L+ D L+GL N F + LS++ D+D+FK Sbjct: 343 VREKLLDANLELERLATQDSLTGLANRRRFDEVLQLEVRRAARDGTVLSLLLIDLDHFKG 402 Query: 142 INDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND +GH GD+ + +S QL + + R GGEE A ++ + A +A +L Sbjct: 403 FNDRYGHVAGDECLKAVSRQLELSAKRSGDLAARYGGEELAIILPNTALEGAMRVAEELL 462 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257 K I I S H+T+S G A + +++ ++ ADQALY AK +GRNR C Sbjct: 463 KCIRGLDIAHESSQFGHVTVSVGAASMQGRHGLASPLDLVEAADQALYRAKAAGRNRAEC 522 >gi|238792557|ref|ZP_04636190.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909] gi|238728192|gb|EEQ19713.1| Diguanylate cyclase [Yersinia intermedia ATCC 29909] Length = 213 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 F NR++ ID L+ L N S+ ++++ + + ++ D+D+FK +ND +GH Sbjct: 29 FSMKNRVN----IDKLTQLNNRSSIDYRLTAIHNSRQACGLLILDLDHFKSVNDTYGHNG 84 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ + L FVGR GGEEF Q +A +R+ +EN + + Sbjct: 85 GDLLLTEVGKLLTSSIRDEDFVGRYGGEEFIVITRRHEPQTIKAVAERIRQQVENLAVVL 144 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I TIS G + + + D+ALY AKK GRN+VV Sbjct: 145 PDGRKIKATISIGASLYLPGMSMLKALKMTDEALYQAKKQGRNQVV 190 >gi|220905025|ref|YP_002480337.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869324|gb|ACL49659.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 1032 Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 14/202 (6%) Query: 67 ENLSLVIISITISLLLGYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 +++++ + I LL+G + ++EL + + ++ D L+G N AF Sbjct: 92 KSVTIALSIFAIVLLVGKLKSREEKNIQELKRYGDALVHMATTDKLTGASNRHAFFKKGA 151 Query: 124 S-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 + +N +S++F DID+FKQ+ND +GH GD V+ +S + R G Sbjct: 152 ALHEHSKKFNMPVSVLFIDIDHFKQVNDLYGHAFGDAVLERISGAIKRCLRGSDINCRYG 211 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST- 235 GEEF + A ++A+ + +++ I P + +++S G++ P S Sbjct: 212 GEEFVVLLAHADSDAAHLVAHRIMNMVQC--IRFQEYPDLRLSVSIGLSSMQPAAPRSLE 269 Query: 236 -IIYRADQALYVAKKSGRNRVV 256 +I AD A+Y AK+ GRNRVV Sbjct: 270 HLIRSADSAMYQAKQDGRNRVV 291 Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 8/91 (8%) Query: 95 ISYNRI-SQLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVG 151 I+Y ++ +LS D L+GL N ++++ + E I + I+ K+IN+ FG G Sbjct: 610 INYEKLLVKLSFEDSLTGLHNRNSYLQGISGAKEVQNAGIAYLSINEMKRINNVFGQAHG 669 Query: 152 DKVIAFLSDQLVVVF--GTPMFVGRLGGEEF 180 D+++A + L F GT R+GG+EF Sbjct: 670 DRLLAECAHCLKNAFPSGTAY---RVGGDEF 697 >gi|153825270|ref|ZP_01977937.1| GGDEF family protein [Vibrio cholerae MZO-2] gi|149741098|gb|EDM55157.1| GGDEF family protein [Vibrio cholerae MZO-2] Length = 392 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 I+V+NL II T+ +L + +E I ++R+ + D L+G N F + Sbjct: 201 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 250 Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ + DID+FKQIND++GH +GD VI ++ L + T V R GGEE Sbjct: 251 QKLKQSKQKSIVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 310 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238 FA A + + + + +R I + ++ P + ++I A I E H+ ++ Sbjct: 311 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 367 Query: 239 RADQALYVAKKSGRNRVV 256 +AD+ALY AK+ GRNR++ Sbjct: 368 QADKALYQAKQQGRNRIM 385 >gi|149183790|ref|ZP_01862192.1| hypothetical protein BSG1_15905 [Bacillus sp. SG-1] gi|148848508|gb|EDL62756.1| hypothetical protein BSG1_15905 [Bacillus sp. SG-1] Length = 539 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 87/187 (46%), Gaps = 16/187 (8%) Query: 89 ILKELFISYNR-------ISQLSRIDCLSGLLN----HSAF---ISSLGSYNEKLSIVFF 134 IL+ELFI NR + L +D L+ L N HS+F + ++LSI F Sbjct: 215 ILEELFIRVNRQIERKEFVDHLILVDELTRLYNRKYLHSSFSQLCAKQWEEEQELSIAFL 274 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+DYFKQ+ND +GH GD V+ SD + R GGEEF + +S ++ Sbjct: 275 DLDYFKQVNDQYGHLTGDIVLKEFSDFVKQRLSPEDSFIRYGGEEFVLLSPDTSAEKCKE 334 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGR 252 N++ G T S+G+ + E S + AD ALY +K++GR Sbjct: 335 RLNNILAAFSEYVFKAEEGEEFTCTFSSGVVDVDASESTSLSYWLDMADLALYQSKENGR 394 Query: 253 NRVVCFS 259 N+V F Sbjct: 395 NQVTLFD 401 >gi|34499542|ref|NP_903757.1| hypothetical protein CV_4087 [Chromobacterium violaceum ATCC 12472] gi|34105392|gb|AAQ61747.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 249 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 11/194 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128 ++++S T++L + + + L+E + + + D ++GL N +L E+ Sbjct: 52 EVLLLSFTMALSMTWFAVRRLREARQLLKALRRQAERDDITGLANRRRANQALQRETERS 111 Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 S++ D+D+FK IND+ GH GD V+ L V R GGEEF Sbjct: 112 YRSGRPYSVLLLDLDHFKHINDSHGHLAGDMVLQRFGQALRQRARQLDTVARWGGEEFII 171 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 + + A LA ++ +++ + G +T S G+A + ++++RAD Sbjct: 172 ICPETEQAGALTLAENIGQLLRETDF----GAVARVTASIGVATLSDDDTPDSLVHRADM 227 Query: 243 ALYVAKKSGRNRVV 256 LY AK++GR+RVV Sbjct: 228 HLYAAKQAGRDRVV 241 >gi|94495919|ref|ZP_01302498.1| hypothetical protein SKA58_15092 [Sphingomonas sp. SKA58] gi|94424611|gb|EAT09633.1| hypothetical protein SKA58_15092 [Sphingomonas sp. SKA58] Length = 565 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 + Q++ D L+G + AF+ L + + S++ D+D+FK +ND +GH GD+ Sbjct: 400 LQQVAARDALTGADSRRAFLDKLDAEMLRAADGARSSLLLMDLDHFKSVNDRYGHGGGDR 459 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QINISS 212 V+ + +GRLGGEEFA + + AA L + LR+ + ++N Sbjct: 460 VLTGFVQAIQPELRDGDSIGRLGGEEFAILLVDCDRRAAAQLCDRLRQRLSAPIRVN-DK 518 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +I +T SAG+ + S ++ AD+ALY AK SGRN Sbjct: 519 DDTIAVTFSAGLVQLDGGSTRSAMLEAADRALYDAKHSGRN 559 >gi|66043359|ref|YP_233200.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63254066|gb|AAY35162.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 335 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGHPV 150 N + +L+ D L+ N F L N L+ + DID FK +ND +GH Sbjct: 168 NELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDFKLVNDTYGHQE 227 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +++ GR+GGEEFAA G + A +A L++ I+ Sbjct: 228 GDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERLQREIQRQNFQ- 286 Query: 211 SSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 S+G + IT S G+ +P + T+ RAD A+Y AK+ G+N++V Sbjct: 287 SAGTTFSITASQGLTNLGPDDPSLETLYGRADAAMYQAKRQGKNQIV 333 >gi|323706164|ref|ZP_08117732.1| diguanylate cyclase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534457|gb|EGB24240.1| diguanylate cyclase [Thermoanaerobacterium xylanolyticum LX-11] Length = 207 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 20/204 (9%) Query: 71 LVIISITISLLLGYISGSI---LKELFIS-----YNRI-SQLSRIDCLSGLLNHSAFISS 121 ++I+S I+L+ Y + SI L + FI Y + +RI L+ L N F Sbjct: 8 VIILSFLITLITYYTANSIVFILIQFFICITISIYTYVLKNNARIGKLTSLYNRKYFDYI 67 Query: 122 LGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 L ++L +++ D+D FK IND +GH GD V+A L+D L R Sbjct: 68 LSDKLKRLRGRANLALLICDVDNFKLINDTYGHVTGDAVLAELADILKANIRKSDTAYRY 127 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 GGEEFA ++ EA ++A ++K +E ++ +T+S G+A +K Sbjct: 128 GGEEFAIIMPNTNYNEAEVVAMRIKKAVEKHFFK----TNVTVTVSVGVAVTNYKVSAID 183 Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259 I+ AD+ALY+AKK +N VVC Sbjct: 184 IVIIADKALYIAKKQ-KNTVVCLQ 206 >gi|316934609|ref|YP_004109591.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315602323|gb|ADU44858.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 406 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 15/167 (8%) Query: 101 SQLSRIDCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGD- 152 ++++R D L+GL N I+ L + +S++ D D+FK +ND +GH +GD Sbjct: 221 AEVARRDPLTGLPNRLKLERAIADLWAGGRDAAAMVSVIMVDFDHFKSLNDRYGHSIGDL 280 Query: 153 ---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V A +S +L R GGEEF G +A LA +R+ +E++ Sbjct: 281 CLRQVAALISAELP---ADDSLAVRYGGEEFLLVLPGMPSSDAVRLAERIRRKVEDASAG 337 Query: 210 ISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRV 255 + G + IT S G+A + S ++I AD+ALYVAK++GRNRV Sbjct: 338 NAFGAELAITASFGVAGALISDLSSESLIAAADKALYVAKRNGRNRV 384 >gi|209546934|ref|YP_002278852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538178|gb|ACI58112.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 730 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 19/175 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL +S +I Q++ D L+ L N S F I+S GS ++ ++ DID+FK +ND Sbjct: 281 ELNVSRQKIHQMAFYDPLTSLPNRSLFNDRLRQMITSAGSRGQRAGLMLIDIDHFKVVND 340 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GHPVGD ++ + +L V RLGG+EFA S+ +DL +I Sbjct: 341 TMGHPVGDDLLCQAAARLNASVRDHDTVARLGGDEFAILLPDISQ------GDDLGRIAN 394 Query: 205 N-----SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253 N + + G + ++ S GIA + ++ AD A+Y+AK+SGRN Sbjct: 395 NILDKFRERFLLDGQEVFVSCSVGIALYPDDSADANDLVKYADSAMYLAKRSGRN 449 >gi|254457534|ref|ZP_05070962.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207086326|gb|EDZ63610.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 245 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 9/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQ 141 SI KEL+ N+ + D L+GL N +SL + ++VF DID FK Sbjct: 68 SIKKELYQVNNKAVTYAFKDALTGLNNRHYLNNFLENFTSLRKEDTDFAVVFIDIDRFKL 127 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND+ GH GD ++ L+ L + + R GGEEF +Q+ +R+ Sbjct: 128 INDSLGHSTGDCILKSLALSLQSLIRPGDTLCRYGGEEFVIIFTEIYKQDVLRKVEQIRE 187 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 IE ITISAGI+ + I+ ++ +D+ALY+AK +GRN V F+ Sbjct: 188 SIERRTFECKEQK---ITISAGISFGLRDDDINEVMEHSDKALYMAKDAGRNCVKVFN 242 >gi|157962687|ref|YP_001502721.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157847687|gb|ABV88186.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 293 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 22/222 (9%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITI--------SLLLGYISGSILKELF--ISYN 98 + F+ G T Y E L + V I+ + +L+L + +L+ L I Y Sbjct: 70 YQFHWGQTYGYAFEQKLTFSDQQVTINYNLKAALVPSQTLMLNQLKDLVLQPLINAIQYQ 129 Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 +SQ + D L+ L N + SL S++ D+D FKQ+ND+FGH +G Sbjct: 130 EMSQQAMYDALTKLGNRHYYQQSLKKEIARAKRNQSSFSLIVLDLDNFKQLNDDFGHQLG 189 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + +D L R+GG+EF + EA +L N I ++ +N Sbjct: 190 DSALVEFADMLNATIRDTDQAFRIGGDEFTLLVQADVD-EARVLCNR----ILDALLNHH 244 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ S G+ + K+ S++ RAD ALY AK +GR Sbjct: 245 YLEKYQVSTSMGVTQWKDKDTESSLYQRADNALYEAKAAGRQ 286 >gi|153831070|ref|ZP_01983737.1| GGDEF family protein [Vibrio cholerae 623-39] gi|148873451|gb|EDL71586.1| GGDEF family protein [Vibrio cholerae 623-39] Length = 372 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++L+ ++ LS D L+GL N + L + V DID FK +N Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH VGDKV+ +++ L F + V RLGG+EF + +A+ + + I Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETDTAGGVYIADQVCRAI 312 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I++ + ++S G+A + H E ++ ADQA+Y+AK SG+NRV F Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368 >gi|120610099|ref|YP_969777.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gi|120588563|gb|ABM32003.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 516 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 16/171 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 +R S +R D L+G LN +L + L + D+D FK IND GH Sbjct: 350 DRASAQARHDPLTGSLNRKGLDEALEREVARALRNDAPLCVALLDLDNFKAINDRLGHTG 409 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENS 206 GD+ + L+ V + R GGEEF AL + A L +L + Sbjct: 410 GDEALKHLAGVTREVMRPQDQLARYGGEEFVIILPDTALAQGVEAMARLQREL-----TT 464 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + + IT SAG+A+ +E I RADQ +Y+AK+SG+NRV+ Sbjct: 465 RYFLKDQEKVLITFSAGVAQVAPQETTVEAIRRADQGMYLAKRSGKNRVMA 515 >gi|71275659|ref|ZP_00651944.1| GGDEF [Xylella fastidiosa Dixon] gi|71897797|ref|ZP_00680023.1| GGDEF [Xylella fastidiosa Ann-1] gi|71163550|gb|EAO13267.1| GGDEF [Xylella fastidiosa Dixon] gi|71732352|gb|EAO34406.1| GGDEF [Xylella fastidiosa Ann-1] Length = 554 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 20/163 (12%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G L A I LS+ F DID+FK+IND +GH GD + + Sbjct: 395 VDGLTGALTRVAIERRLERDIDDARQMGTPLSVAFIDIDHFKRINDEYGHAAGDACLRQV 454 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214 ++ +GR GG+E A G+ A R++ E ++ +SS P Sbjct: 455 VQRVRGWLRASDALGRHGGDELIAILPGADLAAA-------RRVAEGIRVAVSSQPFQFE 507 Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T+S G+A E I ++ RAD LY +K +GR+RV Sbjct: 508 CTRLRCTLSLGVASWLPDESIEALLQRADNGLYASKAAGRDRV 550 >gi|330976967|gb|EGH76987.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 664 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 206 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 262 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND+ GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 263 LFMDLDGFKQINDSLGHEAGDQVLLWVAEQFKATMRPYDVLARIGGDEFTVVIDGLDYPE 322 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 323 QAAKIAEKLIERVSGRRQVD---GVEITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 378 Query: 248 KKSGRNR 254 K++GR + Sbjct: 379 KRAGRQQ 385 >gi|317491487|ref|ZP_07949923.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921034|gb|EFV42357.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 577 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 3/165 (1%) Query: 98 NRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 N + + S D L+ + N F S + S L+ DID FK +ND +GH VGD Sbjct: 398 NELLEASSTDPLTNIYNRRKFFNQCSQIKSAEYPLAFCLIDIDNFKNLNDRYGHDVGDLA 457 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + S L R GGEEFA + +A + + +R E I I + P Sbjct: 458 LIAFSQLLTQSLPKDTVYCRYGGEEFAILLKYTDVPQAMQIIDSVRLDTELLHITIPNKP 517 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + TIS G+A + I+ I +AD+ALY +KK G+N+V +S Sbjct: 518 GVGFTISCGLARLDDYKNINHSIKQADEALYFSKKRGKNQVSFYS 562 >gi|312960693|ref|ZP_07775199.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas fluorescens WH6] gi|311285219|gb|EFQ63794.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas fluorescens WH6] Length = 352 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 83/186 (44%), Gaps = 12/186 (6%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSI 131 L LG+I L + LSR D LSGLLNH A+ L + I Sbjct: 159 PLALGWICYRQAVNLARHKRELMTLSRTDSLSGLLNHGAWKDHLEIEFQRCRRDQQGAVI 218 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID+FK IND +GH GD V+ L L GR GG+EF G Sbjct: 219 ALIDIDHFKLINDTYGHVTGDIVLRQLGKVLRQNLRATDLAGRYGGDEFCVILPGMPLNH 278 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKK 249 A + LR + + + P++ ++S G+A + H + S + AD ALY AK Sbjct: 279 ATDVMEALRD--RFNALAYAQDPALRASLSIGLAPYQPGHADSTS-WLNDADLALYEAKS 335 Query: 250 SGRNRV 255 SGRNRV Sbjct: 336 SGRNRV 341 >gi|222087155|ref|YP_002545690.1| GGDEF family protein [Agrobacterium radiobacter K84] gi|221724603|gb|ACM27759.1| GGDEF family protein [Agrobacterium radiobacter K84] Length = 738 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 37/227 (16%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 G T + +++ L LV + + L+LG ++G + L Q S D LSGLL Sbjct: 257 GDTSYQQARPLVLGALGLVGMFFVVLLILGSLAG---RRLRAEEALARQGSLRDRLSGLL 313 Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N + S + + +++ D+D FK+IND +GH GD++I ++ L V+ Sbjct: 314 NREGLRLDVDRLVDSARADGSNVLLLYLDLDGFKEINDAYGHGTGDQLIRSVAAGLNVLI 373 Query: 167 GTPMFVGRLGGEEFA----------AAALGSSEQEAAILANDL----RKIIENSQINISS 212 + RLGG+EFA A AL +EQ L+ L R I+ + I I+S Sbjct: 374 PPNATLARLGGDEFAIAFPSRELNHAPALRLAEQVLDFLSEPLEIGRRVIVVGASIGIAS 433 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P R +E ++ RAD A+Y AK++GR R++C+ Sbjct: 434 SPE----------GRIDRE---ELVRRADLAMYKAKEAGRARMICYE 467 >gi|197336762|ref|YP_002158646.1| sensory box/ggdef family protein [Vibrio fischeri MJ11] gi|197314014|gb|ACH63463.1| sensory box/ggdef family protein [Vibrio fischeri MJ11] Length = 509 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 13/215 (6%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P + +E I + L+ I +S ++ + + + I +N I +L+ D L+GL+N Sbjct: 298 PKWSIERISSGEVLLIGCFILLSFIVSLVITQLQLKKKIDHNEIKKLAHHDSLTGLINRG 357 Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F + KL++++ D+D FK +NDNFGH GD + ++ L F Sbjct: 358 YFKKLFHWKMQKARKNETKLALIYIDLDGFKDLNDNFGHSAGDLALKAVARNLYSTFAEN 417 Query: 170 MFVGRLGGEEFAAAALGSSEQEA--AILANDLRKIIENSQINISSGPSIHITISAGIA-E 226 +V RLGG+EFA ++E A++ L N+ + + P ++ S G+A Sbjct: 418 SYVARLGGDEFAVLIHTVIDEEEIFALVEEFLES--SNTPLMLEDIP-YQLSTSIGLAFF 474 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 H I+ +++ AD A+Y K+SG+N F ++ Sbjct: 475 PEHGRSINELMHNADAAMYDIKRSGKNGFKVFENL 509 >gi|24374845|ref|NP_718888.1| GGDEF family protein [Shewanella oneidensis MR-1] gi|24349537|gb|AAN56332.1|AE015771_2 GGDEF family protein [Shewanella oneidensis MR-1] Length = 574 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 15/175 (8%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++ D L+G N +S +N LSIV FD+D FK+ ND +GH G Sbjct: 400 QVKTMAETDGLTGCYNRRYLDNQILKELSYANDHNMPLSIVMFDLDNFKEFNDQYGHVNG 459 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQIN 209 D+ + + + + P + R GGEEF S ++A +A LR+ +I+ I+ Sbjct: 460 DQCLRQIVNAAKSILQRPTDILARYGGEEFMLLLPSSHIEDAYKIAERLRETVIDLHIIH 519 Query: 210 ISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKSGRNRVVCFSD 260 S S +TIS G+A C + P ++ +I D+ALY AK +GRNR F D Sbjct: 520 QGSSHSGIVTISLGVA--CWQPPESFDVNKLISHVDEALYRAKLAGRNRTEVFID 572 >gi|315123486|ref|YP_004065492.1| hypothetical protein PSM_B0546 [Pseudoalteromonas sp. SM9913] gi|315017246|gb|ADT70583.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 502 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 9/161 (5%) Query: 106 IDCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ L N +AF + +NE+ +++V D+D+FK IND FGH GD + + Sbjct: 343 LDSLTKLPNRAAFDERYNHEINLFNEQPSDITLVVIDVDHFKSINDRFGHTAGDITLQVI 402 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L F+ R GGEEF +S + A N LR+ I+ I I Sbjct: 403 AKALQKSIRQSDFIARYGGEEFVLLMPRTSLENATAHLNKLRQSIKKIPFKF-KDKQIEI 461 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 T+S G + + RADQALY AK SGR+R +C S Sbjct: 462 TVSLGATQFKEGDTPLKAFDRADQALYDAKNSGRDR-LCIS 501 >gi|327395329|dbj|BAK12751.1| diguanylate cyclase/phosphodiesterase YciR [Pantoea ananatis AJ13355] Length = 724 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 10/179 (5%) Query: 87 GSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFK 140 G I++++ + Y R+ +L+ +D L+ L + SAF++ L E +++ D+D FK Sbjct: 287 GMIIRDVTLRYESEARLCELASLDMLTRLASRSAFMTQLSKLTESGVPYTLLMTDLDSFK 346 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND GH GD ++ +++Q+ V + RLGG+EF L EA +A L Sbjct: 347 DVNDTRGHAAGDALLCHVAEQIRAVCTQAIAAARLGGDEF-IVLLPCGSDEAMKIAQQLT 405 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I+ + S +I + S G+A H S+++ AD ALY AK SG+ + V F Sbjct: 406 AAIQTPFHYMDS--TIAVGASTGVASFPHHAADTSSVMSAADLALYRAKASGKGQSVLF 462 >gi|296103575|ref|YP_003613721.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058034|gb|ADF62772.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 566 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 6/131 (4%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S+V D+D FK IND FGH GDKV++ + + GR+GGEEF G Sbjct: 431 SVVQIDLDNFKSINDRFGHQAGDKVLSHAAGLIASALRKNDVAGRVGGEEFCVVLPGIGL 490 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALY 245 +EA +A +R I++ +I + ++ I+ S G++ C +E + AD LY Sbjct: 491 EEARAVAERIRSRIDSKEILVKKSTTLRISASMGVS--CAQEKGNYDFEQLQSIADARLY 548 Query: 246 VAKKSGRNRVV 256 +AK+ GRN+VV Sbjct: 549 LAKQRGRNQVV 559 >gi|153828796|ref|ZP_01981463.1| GGDEF family protein [Vibrio cholerae 623-39] gi|148875749|gb|EDL73884.1| GGDEF family protein [Vibrio cholerae 623-39] Length = 392 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 I+V+NL II T+ +L + +E I ++R+ + D L+G N F + Sbjct: 201 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 250 Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ + DID+FKQIND++GH +GD VI ++ L + T V R GGEE Sbjct: 251 QKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 310 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238 FA A + + + + +R I + ++ P + ++I A I E H+ ++ Sbjct: 311 FAIFARENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 367 Query: 239 RADQALYVAKKSGRNRVV 256 +AD+ALY AK+ GRNR++ Sbjct: 368 QADKALYQAKQQGRNRIM 385 >gi|144897557|emb|CAM74421.1| GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 452 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 15/162 (9%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD--- 152 ++ D L+GL N F I Y+ L+++ D+D+FK +ND +GH VGD Sbjct: 289 MASTDPLTGLTNRRRFAERADEEIRRAQRYDVALTLIVGDVDHFKAVNDGWGHDVGDLAL 348 Query: 153 -KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V + DQL V R+GGEEF A + +A +A +R I + ++ Sbjct: 349 RHVASIWRDQLRDVD----LSARIGGEEFVALLPETPLPQAEGVAERIRAAIAATPLSTE 404 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +H+TIS GIA E ++ ++ RADQA+Y AK SGRN Sbjct: 405 GVAVMHLTISLGIAALLPGETLTDLMRRADQAMYRAKHSGRN 446 >gi|86361180|ref|YP_473067.1| putative kinase/esterase protein [Rhizobium etli CFN 42] gi|86285282|gb|ABC94340.1| putative kinase/esterase protein [Rhizobium etli CFN 42] Length = 588 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 9/159 (5%) Query: 107 DCLSGLLNHSAF---ISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GLLN +F +S L K++++ D+D+FK+IND FGH VGD V++ +S+ L Sbjct: 162 DHLTGLLNRRSFDFALSELARQESVKVALLHIDVDHFKEINDRFGHAVGDLVLSHVSNIL 221 Query: 163 VVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + F RLGG+EFA ++ A+L + R++ S + + I + S Sbjct: 222 LEAISAGDFAARLGGDEFAVVITEDECDRTIAVLDHIQRRL--GSPLPVGDQTLI-VRCS 278 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G+A + + ++ ++D ALY AK++GRNR FSD Sbjct: 279 IGVASAMSAD-FARLLSQSDLALYHAKRNGRNRAEIFSD 316 >gi|86358628|ref|YP_470520.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] gi|86282730|gb|ABC91793.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] Length = 783 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 14/177 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL S +R + + D L+GLLN F I++ + ++L+ +F D+D FK IND Sbjct: 336 ELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGQELACLFVDLDRFKWIND 395 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203 N GH GD+ + L ++L RLGG+EFA +E+ A + + I Sbjct: 396 NMGHAAGDRALIELVERLKTHLAPSDEAARLGGDEFAILLPAKDAEKRAKAMCEQIASIF 455 Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 E P +H++ S GI+ H + ++ ++D A+Y K+ G+N F Sbjct: 456 ET-----PFAPDMHLSASIGISIYPHHAATAAELLQKSDMAMYAKKRDGKNGAQLFD 507 >gi|107102843|ref|ZP_01366761.1| hypothetical protein PaerPA_01003911 [Pseudomonas aeruginosa PACS2] Length = 726 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 22/186 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 ++L +L ++ + Q++R D L+GL N +AF + + + L+++F D+D+FK Sbjct: 272 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 331 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199 +IND+ GH GD+++ +S+++ V V R G+EF A + + EA IL+ L Sbjct: 332 RINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 391 Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253 +K+ E ++ G ++ +T S G++ E+C + ++ A AL+ +K GRN Sbjct: 392 QKMKEPIALD---GRTLVMTASVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 443 Query: 254 RVVCFS 259 FS Sbjct: 444 NAQFFS 449 >gi|302530995|ref|ZP_07283337.1| predicted protein [Streptomyces sp. AA4] gi|302439890|gb|EFL11706.1| predicted protein [Streptomyces sp. AA4] Length = 242 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 6/158 (3%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+ N L +++ D+D FK +ND +GH +GD+V+ ++D L Sbjct: 82 DPLTSSYNRRYLDQRLPELPAAVAVALVDLDRFKSVNDTYGHLLGDRVLCRVADLLQEGL 141 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIA 225 F R GGEEFA G + A +A+ R ++ + + P + +TIS G+A Sbjct: 142 PADAFCARYGGEEFALVLPGIDHRGAVRIADAARLRVARHPWSELQ--PGLRVTISVGLA 199 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 P ++RAD LY AK++GRN+ V F D E Sbjct: 200 HGTGSGPRQ--LHRADNLLYAAKRAGRNK-VAFHDCET 234 >gi|291085296|ref|ZP_06352670.2| developmental regulator MorA [Citrobacter youngae ATCC 29220] gi|291071533|gb|EFE09642.1| developmental regulator MorA [Citrobacter youngae ATCC 29220] Length = 681 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFK 140 SG+ + E + R+ L+ D ++GL N +A +G+ E ++ IV+ D+D FK Sbjct: 237 SGTDITEERRAQERLRVLANTDSITGLPNRNAIHELIGNAIENAGDTQVGIVYLDLDNFK 296 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 ++ND +GH GD+++ +S ++ + R GG+EF A +S E A+ + Sbjct: 297 KVNDAYGHMFGDQLLQSVSLAILSCLDDNQLLARFGGDEFIVLATETSQSALEATASRIL 356 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G SI I+++ + C ++I AD A+Y AK+ GR + Sbjct: 357 TRLRQPFRIGLIEVYTGCSIGISLAPQHGQDCE-----SVIRNADTAMYTAKEGGRGQFC 411 Query: 257 CFS 259 FS Sbjct: 412 VFS 414 >gi|271501910|ref|YP_003334936.1| PAS/PAC sensor-containing diguanylate cyclase [Dickeya dadantii Ech586] gi|270345465|gb|ACZ78230.1| diguanylate cyclase with PAS/PAC sensor [Dickeya dadantii Ech586] Length = 483 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 13/187 (6%) Query: 87 GSILK--ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNE----KLSIVFFDID 137 GS+L +L S + L++ D L+G+ N F L +E LS++ DID Sbjct: 291 GSMLDITDLKQSETLLQVLAQTDSLTGIANRRHFDERYQQLWRQHESIQMPLSLLMIDID 350 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 FK+ ND++GH GD I + + L + + +GR GGEEF + Q+A LA Sbjct: 351 RFKRFNDSYGHSKGDACIKSVVETLAGQLPSSECLLGRYGGEEFTVVLPQTDYQQALALA 410 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY---RADQALYVAKKSGRN 253 R+ +E+ +I + P +T+S G+A + S++ AD ALY AK GRN Sbjct: 411 ERCRQAVESMEIPHTKSPQGVVTVSIGVAVARPGDAGSSMTQLSNDADDALYRAKHLGRN 470 Query: 254 RVVCFSD 260 RV D Sbjct: 471 RVEAGPD 477 >gi|255101387|ref|ZP_05330364.1| putative signaling protein [Clostridium difficile QCD-63q42] Length = 391 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 110/245 (44%), Gaps = 30/245 (12%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFIS 96 F +VI FLF P G++ I S ++ + I+ L ++S + + +F Sbjct: 147 FGESVIVFGGCFLFLNLFLP--GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTY 204 Query: 97 YNRI---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFF 134 Y+++ Q I ++ LLN L N E ++ + Sbjct: 205 YDKLLISQQYEEISHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMI 264 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEA 192 DIDYFKQ NDN+GH GD + ++ ++++ F + R GGEEF +E EA Sbjct: 265 DIDYFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCNEAEA 323 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKS 250 + + LRKIIE P +T+S G+ + ++ I+ I D+ALY AK+ Sbjct: 324 KLKSECLRKIIECCNFERDDVPLKCVTVSIGVYTKKIEKTITLNEFISNCDKALYTAKEQ 383 Query: 251 GRNRV 255 GRN V Sbjct: 384 GRNCV 388 >gi|153000750|ref|YP_001366431.1| PAS/PAC sensor-containing diguanylate cyclase [Shewanella baltica OS185] gi|151365368|gb|ABS08368.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS185] Length = 345 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 39/203 (19%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGH 148 + +++L+ D L+G+ N F L ++LS +V DID FK +ND +GH Sbjct: 138 AQTELNRLALTDELTGIANRRHFFQQLEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGH 197 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA---------AAALGSSEQEAAILAND 198 VGDK++ + Q + P + GRLGGEEFA AA + +++ D Sbjct: 198 QVGDKILQHFT-QFISARTRPYDIFGRLGGEEFALLLPETTVDAAQKIVTRMMSSLANED 256 Query: 199 LRKIIENSQINISSGPS------IH--ITISAGIAE------------RCHKEPISTIIY 238 + I+ + Q S+G S IH I SA IA+ +C + ++ Sbjct: 257 ISAIVADFQYQFSAGVSALTPVIIHHGIDNSADIADVEQVALPVETGSQCRSDA-EKLVA 315 Query: 239 RADQALYVAKKSGRNRVVCFSDI 261 AD+ALY AK GRNRVV + D+ Sbjct: 316 EADKALYQAKTLGRNRVVIWDDV 338 >gi|332160194|ref|YP_004296771.1| HmsT protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607242|emb|CBY28740.1| putative membrane protein [Yersinia enterocolitica subsp. palearctica Y11] gi|325664424|gb|ADZ41068.1| HmsT protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863409|emb|CBX73530.1| hypothetical protein YEW_AO02740 [Yersinia enterocolitica W22703] Length = 366 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 23/248 (9%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILV---ENLSLVIISITISLLLGY------ 84 F+IF + I +++ FL + T L I + +N+ +I +I + L+ G+ Sbjct: 112 LFTIFFISTIALSDNFLAFCLHTAPAALTVIFLDDFQNIFRIIFTIMLPLI-GFSLHHLM 170 Query: 85 ------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFF 134 + ++ L+ + S LS ID L+ L N + L + + ++ Sbjct: 171 LRRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYVLLL 230 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK NDN+GH +GD+ + ++ + + V R GGEEF SE+ A+ Sbjct: 231 DIDHFKAYNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQ 290 Query: 195 LANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 LA +R+ + I + S +T+SAGI+ +++ + AD+ALY AKK GR Sbjct: 291 LAERVRERVLGLDIPHVFNHKVSTTVTLSAGISP-LQPYDLASSLKAADEALYRAKKDGR 349 Query: 253 NRVVCFSD 260 N+V D Sbjct: 350 NKVAFAED 357 >gi|299536794|ref|ZP_07050102.1| response regulator receiver modulated diguanylate cyclase [Lysinibacillus fusiformis ZC1] gi|298727806|gb|EFI68373.1| response regulator receiver modulated diguanylate cyclase [Lysinibacillus fusiformis ZC1] Length = 401 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 9/174 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNF 146 L I N +++ + D L+ L N AF L S + L+++ DID FK+ ND + Sbjct: 215 LAIKNNELAEQALKDSLTNLPNRRAFNQKLNKIGQQLSQTQPLTVIMIDIDCFKKFNDYY 274 Query: 147 GHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH GD I ++ L + G FV R GGEEF + + + + L +I + Sbjct: 275 GHLQGDAAIVKVASLLEEIAGKYNAFVARWGGEEFVMISQHTHKVAEPVCEEILEEIRQL 334 Query: 206 SQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + ++ S + +T+S G+ A+ E + T ADQALY+AK++GRN C Sbjct: 335 NIPHLQSTIAQQVTVSIGMCQAKIAKYEHLQTCCELADQALYLAKQNGRNNYFC 388 >gi|319765013|ref|YP_004128950.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|330827208|ref|YP_004390511.1| diguanylate cyclase [Alicycliphilus denitrificans K601] gi|317119574|gb|ADV02063.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|329312580|gb|AEB86995.1| diguanylate cyclase [Alicycliphilus denitrificans K601] Length = 377 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 85/162 (52%), Gaps = 11/162 (6%) Query: 107 DCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +A +L E+ LS++ DID+FK+IND GH GD V+ L+ Sbjct: 207 DPLTGLFNRRQLDAALAPALRRCREQGTPLSVLLIDIDHFKRINDAHGHAAGDMVLQALA 266 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHI 218 L+ RLGGEEF L AAI A +LR+ E ++ S G + Sbjct: 267 RLLLRHARPQDLACRLGGEEF-LLVLDDMPVAAAIERAQELRQAFEALRVR-SEGEELAA 324 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 T+S G+A H + ++ ADQALY AK+ GRNRVV ++ Sbjct: 325 TLSCGVAAFPQHADQPQALLACADQALYTAKEQGRNRVVMWA 366 >gi|148547736|ref|YP_001267838.1| diguanylate cyclase [Pseudomonas putida F1] gi|148511794|gb|ABQ78654.1| diguanylate cyclase [Pseudomonas putida F1] Length = 522 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 11/177 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFK 140 +I + L ++ + L+ D L+GL N F L + L++V D+DYFK Sbjct: 332 AIERALLQAHQTLKALALTDSLTGLGNRRRLDGVFEPELRRARRQGYPLALVMLDLDYFK 391 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199 ND +GHP GD+ + ++ L P + R GGEEF + + A +L +L Sbjct: 392 AYNDRYGHPAGDQCLRRFAEVLQQALKRPADLAVRYGGEEFTLLLPDTDGRGAEMLVQEL 451 Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPIS--TIIYRADQALYVAKKSGRN 253 +K++ + ++ P ++ SAGIA +E ++ ++ AD+ALY AK+ GR+ Sbjct: 452 QKLLRRQALEHAASPLGRVSFSAGIAVVDLAREGVTAEALVAAADRALYQAKQQGRD 508 >gi|186685808|ref|YP_001869004.1| response regulator receiver modulated diguanylate cyclase [Nostoc punctiforme PCC 73102] gi|186468260|gb|ACC84061.1| response regulator receiver modulated diguanylate cyclase [Nostoc punctiforme PCC 73102] Length = 341 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 89/182 (48%), Gaps = 17/182 (9%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQ 141 + K+L + + L+ +D L+ L N F +L LS++ DIDYFK Sbjct: 160 VYKQLEAANQALQHLANVDGLTELANRRRFDDYLNTQWINLAQEESPLSMILCDIDYFKF 219 Query: 142 INDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 ND +GHP GD KV A L+ + V R GGEEFA + A +A Sbjct: 220 YNDKYGHPAGDVCLQKVGAVLN---LKAQKHQDLVARYGGEEFAVIMPYTHASGAIHVAA 276 Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254 ++ I++ QI + S S H+T+S G+A + S +I RAD+ALY AK GR+R Sbjct: 277 TIQAGIKDLQIAHAGSAVSQHVTLSMGVATVVPTWESSPSDLIVRADKALYQAKAGGRDR 336 Query: 255 VV 256 V Sbjct: 337 FV 338 >gi|262171594|ref|ZP_06039272.1| GGDEF family protein [Vibrio mimicus MB-451] gi|261892670|gb|EEY38656.1| GGDEF family protein [Vibrio mimicus MB-451] Length = 525 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 106/193 (54%), Gaps = 18/193 (9%) Query: 76 ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSY 125 + ISLLLGYI+ +L+E L + L+ D L+G+ N +F +S++ + Sbjct: 314 VIISLLLGYITRLLLEEKTRLEEMLDERTAELRYLAEHDSLTGIYNRRSFNNLLSNMLNS 373 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAA 184 + ++V FDID FKQIND+ GH VGD + + + + + FV R+GG+EFA + Sbjct: 374 GQPFTLVSFDIDCFKQINDSHGHLVGDDALVHVVNLVTQKLLPNDHFV-RMGGDEFAILS 432 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQ 242 + + + +R +E + + I+ G S+ +T+S G I+E ++ S +++ D Sbjct: 433 NVAERETLSNYLESIRATVERNPLVINQG-SVALTVSIGACISEGLNE---SELLHSVDA 488 Query: 243 ALYVAKKSGRNRV 255 LY++K GRNRV Sbjct: 489 QLYLSKTLGRNRV 501 >gi|260777611|ref|ZP_05886504.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605624|gb|EEX31909.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio coralliilyticus ATCC BAA-450] Length = 411 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 21/174 (12%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +L+ D L+ + A S L ++ +I DID+FK ND +GH GD V+ ++ + Sbjct: 236 ELAFKDRLTDIPGRLALESDLRHLGKRYTIAMLDIDHFKSFNDTYGHETGDDVLKLVASK 295 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS--- 215 + V G V R GGEEF EA LR IE ++ N S P Sbjct: 296 MQRVGGRAK-VYRYGGEEFTVLFKNKDVDEALDHLELLRSSIEEYEMVVRNEKSRPKDDK 354 Query: 216 --------------IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++TIS G+A+ + + +S ++ AD ALY AK++GRNR+ Sbjct: 355 SGAKKRRKSNSHDHVNVTISIGVADHENADSVSEVMKCADAALYKAKRAGRNRI 408 >gi|109900516|ref|YP_663771.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109702797|gb|ABG42717.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 631 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 18/183 (9%) Query: 92 ELFISYNRISQLSR-------IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 EL I+ +S+++R +D L+G+ N F + +L + DID Sbjct: 443 ELEIALRELSEINRELEEKNTLDALTGIRNRRYFDKKYLAEVRRSRRERTELVVAMIDID 502 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILA 196 +FK++ND GH VGD+ I F++++L P V R GGEEF+ + + A L Sbjct: 503 HFKRVNDEHGHLVGDECIKFVAERLKKALKRPSDDVCRYGGEEFSVILPSTDIKGAQDLL 562 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNR 254 LR I+++ + S+G +++T+S G+A ++ +I ADQ LY AK +GRN Sbjct: 563 EQLRLDIQDTPV-YSAGVVVNLTVSIGLASAIMDPQQSEDVLIGFADQLLYQAKNNGRNC 621 Query: 255 VVC 257 +V Sbjct: 622 IVA 624 >gi|126174348|ref|YP_001050497.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS155] gi|125997553|gb|ABN61628.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS155] Length = 343 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 39/203 (19%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGH 148 + +++L+ D L+G+ N F L ++LS +V DID FK +ND +GH Sbjct: 135 AQTELNRLALTDELTGIANRRHFFQQLEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGH 194 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA---------AAALGSSEQEAAILAND 198 VGDK++ + Q + P + GRLGGEEFA AA + +++ D Sbjct: 195 QVGDKILQHFT-QFISARTRPYDIFGRLGGEEFALLLPETTVDAAQKIVTRMMSSLANED 253 Query: 199 LRKIIENSQINISSGPS------IHITI--SAGIAE------------RCHKEPISTIIY 238 + I+ + Q S+G S IH I SA IA+ +C + ++ Sbjct: 254 ISAIVADFQYQFSAGVSALTPVIIHHEIDNSADIADVEQVALPVETGSQC-RSDAEKLVA 312 Query: 239 RADQALYVAKKSGRNRVVCFSDI 261 AD+ALY AK GRNRVV + D+ Sbjct: 313 EADKALYQAKTLGRNRVVIWDDV 335 >gi|323491710|ref|ZP_08096888.1| hypothetical protein VIBR0546_05683 [Vibrio brasiliensis LMG 20546] gi|323314072|gb|EGA67158.1| hypothetical protein VIBR0546_05683 [Vibrio brasiliensis LMG 20546] Length = 414 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 5/168 (2%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 + + +L+ D L+GL N + S + +I DID FKQ+ND+FGH GD + Sbjct: 249 DELYKLANQDALTGLWNRRFLFAQACSGCQLRNIAMIDIDLFKQVNDSFGHDGGDAALKN 308 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +++ L + F + V R GGEEF + +E+ L N +R+ +E + G +I+ Sbjct: 309 VANILKIYFNEDVVV-RFGGEEFCIQSCAPAEEFITRLDN-MRQRVEKTPAKY-QGSTIN 365 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 +T+S G++ I I AD LY AKK GRN+VV +I T Sbjct: 366 VTVSVGVSSI--DGDIHDQIKLADDRLYFAKKMGRNQVVYEDEIVKKT 411 >gi|121593570|ref|YP_985466.1| diguanylate cyclase [Acidovorax sp. JS42] gi|120605650|gb|ABM41390.1| diguanylate cyclase [Acidovorax sp. JS42] Length = 507 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 20/178 (11%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L +R S +R D L+G LN F I+ + L + D+D FK IND Sbjct: 336 LRQELDRASAQARHDPLTGSLNRKGFAEAMEREIARARRQDAPLCVALLDVDNFKSINDR 395 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH GD + L+ V + R GGEEF L +E LA + K +E Sbjct: 396 LGHTAGDAALVHLAQVTREVMRPQDQLARYGGEEF-VIILPDTE-----LAEGV-KAMER 448 Query: 206 SQINISS------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 Q +++ + IT SAG+A+ +E + I RADQ +Y+AK++G+NRVV Sbjct: 449 LQRELTTRYFLKDQERVLITFSAGVAQVEGEEGSADAIRRADQGMYLAKRTGKNRVVA 506 >gi|18310770|ref|NP_562704.1| hypothetical protein CPE1788 [Clostridium perfringens str. 13] gi|18145451|dbj|BAB81494.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 299 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 4/129 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188 +++ DID FK++ND +GH VGDK++ + L + ++GR GGEEF ++ Sbjct: 172 TVIMTDIDSFKKVNDTYGHLVGDKILRDFAKVLNNNIRENSDWIGRYGGEEFIIVLNNTN 231 Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247 + +A LRKIIE +++ G S+ IT S G+ E KE I AD+ LY+A Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289 Query: 248 KKSGRNRVV 256 K +GRN+ V Sbjct: 290 KMTGRNKTV 298 >gi|115524075|ref|YP_780986.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] gi|115518022|gb|ABJ06006.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] Length = 507 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 12/177 (6%) Query: 91 KELFISYNRISQLSR---IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140 +++ + NR+ + R D L+G+ N F +S+G ++ LS+V DID FK Sbjct: 163 EQIRVLQNRLDLVQRETLSDPLTGVANRRMFDASIGRLIEQADQHDSPLSLVLIDIDNFK 222 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND FGH VGD ++ ++ ++ + R GG+EFA + + A +A +R Sbjct: 223 HFNDKFGHLVGDGILRLVATEITQSCRANDVICRNGGDEFAVILPETPIEGALAVAEAIR 282 Query: 201 KIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + Q+ + P IT S G+A+ ++ RAD+ LY AK GRNRV Sbjct: 283 ERVMKRQLLRRSTKEPMGRITTSIGVAQHQKGNSPEALVARADKWLYSAKTLGRNRV 339 >gi|124267884|ref|YP_001021888.1| diguanylate cyclase [Methylibium petroleiphilum PM1] gi|124260659|gb|ABM95653.1| diguanylate cyclase [Methylibium petroleiphilum PM1] Length = 251 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 12/186 (6%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------I 131 +L G + L++L + + LS D L+GL N F +L ++++ + Sbjct: 35 ALSTGPRDATWLQQLV---DALCDLSSRDALTGLANRRQFDLALERETDRVARSGEAALV 91 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK++ND +GH GD V+ ++ L V R GGEEFA Sbjct: 92 LLLDIDHFKRVNDTYGHAAGDMVLQAVARTLQECVRPMDTVARYGGEEFAIVLPNCPPAF 151 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKK 249 A A +R+ +E + + G + +T+SAG A + RAD LY AK Sbjct: 152 AQAAAERVRRAVEARTVPLPQGTMLSVTLSAGGAFAPPWVRSSARLWTERADAQLYRAKA 211 Query: 250 SGRNRV 255 GRNR Sbjct: 212 EGRNRT 217 >gi|293401458|ref|ZP_06645601.1| response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305096|gb|EFE46342.1| response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 311 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 5/160 (3%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GLLN + L + N + ++ DID FK +ND FGH +GD V+ ++ L Sbjct: 147 DALTGLLNRNYVDQKLKNTLDINIPMMLIIADIDDFKYVNDYFGHEIGDMVLIGIASTLA 206 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V R GGEEF G ++Q+ +A +R +E+ + S+G H T++ G Sbjct: 207 AT-AAKWEVIRWGGEEFLIVFKGVTQQDCTEVAEQIRYAVEHLPFH-SNGEDFHCTLTQG 264 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 I H S + AD+ALY K+ G+N +C+ +++ Sbjct: 265 ITCYDHALTFSENVEMADKALYYGKRHGKNCFICYEHMKD 304 >gi|242238781|ref|YP_002986962.1| diguanylate cyclase [Dickeya dadantii Ech703] gi|242130838|gb|ACS85140.1| diguanylate cyclase [Dickeya dadantii Ech703] Length = 469 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 22/193 (11%) Query: 85 ISGSILKELFISYN---------RISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128 I+ I LF++ N R+ + D L+ L+ F +L +Y N Sbjct: 277 IAAIIFSPLFMAMNAKTIRLLNKRLLLQASYDFLTNTLSRYGFNEALTNYGKEERYRNVS 336 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 ++I+ DID+FK IND+FGH GD+V+ ++ + + R+GGEEFA S Sbjct: 337 VNIMLIDIDHFKHINDSFGHDCGDEVLKQVAAIIKDTINEQGLISRIGGEEFAVVCFDYS 396 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-----EPISTIIYRADQA 243 LA+ LR+ I + + P + + IS G+A + + +AD+ Sbjct: 397 PDAFYWLADKLRRRIYETTFMFNQSP-VPVAISIGLAHASSPNGDLLNTVHQLCTQADKN 455 Query: 244 LYVAKKSGRNRVV 256 LY AK+ GRN+ V Sbjct: 456 LYAAKRQGRNQTV 468 >gi|238917301|ref|YP_002930818.1| histidine ammonia-lyase [Eubacterium eligens ATCC 27750] gi|238872661|gb|ACR72371.1| histidine ammonia-lyase [Eubacterium eligens ATCC 27750] Length = 602 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 12/205 (5%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----- 119 LV N ++I L +G IS + + + +++D +G+ N A Sbjct: 218 LVFNGQALMIESDKRLTVGVISEPDKRTRVVQEHTDMDEAKLDSATGIYNKKAITDMITE 277 Query: 120 ----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 +++ + N ++ ++ DID FK++ND++GH GD+VI +D L + G VGR+ Sbjct: 278 EINKAAVENKNRQMYLMILDIDNFKRVNDSYGHYFGDEVIKSFADSLRMSVGGRGLVGRI 337 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIS 234 GG+EF S +E I+ +RK ++ + P + S GI++ Sbjct: 338 GGDEFMVLLKDVSVEEIRIMLKSMRKGLK--MLLAQKQPEYLFSTSIGISQFSKDGTDFE 395 Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259 T+ AD ALY+AK+ G++R + + Sbjct: 396 TLFKIADAALYIAKEKGKDRYIIYD 420 >gi|163736853|ref|ZP_02144271.1| glutamyl-tRNA synthetase [Phaeobacter gallaeciensis BS107] gi|161389457|gb|EDQ13808.1| glutamyl-tRNA synthetase [Phaeobacter gallaeciensis BS107] Length = 511 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 8/167 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + + S D L+G+ N F+ L +L ++ FD D FK ND GH Sbjct: 328 DELHDQSTRDPLTGVYNRRYFLGELRNAVALADRRASQLGVLSFDADRFKTFNDTHGHDA 387 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ + D L +F R+GGEEFA + +++ + LR IE+ + Sbjct: 388 GDMVLRAIGDTLKELFRNGEVCCRMGGEEFAVFLPDTDKEQTMEVGEALRAAIEDITLRY 447 Query: 211 SSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256 SG +TIS G+A + +++ AD+ALY AK +GRN VV Sbjct: 448 GSGTLPRVTISIGVASYPEDGLLPQDLMHAADRALYAAKDAGRNCVV 494 >gi|158333739|ref|YP_001514911.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158303980|gb|ABW25597.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017] Length = 443 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 8/172 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 +L S + +L+ +D L+ + N F + +++S++ DID+FKQ+ND Sbjct: 258 KLEQSQQDLYRLATLDGLTEVYNRREFNRWLRVEVEKSQRNTDQVSLIMVDIDHFKQLND 317 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD + ++ L V R GGEEFA ++ ++ +A+ +R I Sbjct: 318 TYGHQAGDLALCEVAQLLQREVRPGDIVCRYGGEEFAVILPKTNHDDSVAIADRIRLAIA 377 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I + S I +T S G+A + +I +ADQALY AK SGRNRV Sbjct: 378 EEAIILPSLQQIEMTASLGVATFPGDAQTKEHLIKQADQALYGAKTSGRNRV 429 >gi|134292528|ref|YP_001116264.1| diguanylate cyclase [Burkholderia vietnamiensis G4] gi|134135685|gb|ABO56799.1| diguanylate cyclase [Burkholderia vietnamiensis G4] Length = 520 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 17/208 (8%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQ-----LSRIDCLSGLLNHSAFISSL 122 + ++ I S ++L +G+I S+L ++ + + ++ L+R D L+GL N +L Sbjct: 303 DRAIPIGSAMVALAIGFIGLSLLLDVQLRKRQRAETELQALARTDGLTGLDNRRMLDVTL 362 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174 + LS++F D+D+FK+ ND GH GD +A + + P + R Sbjct: 363 AREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVGRCIAGCLRRPADYAAR 422 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 GGEEF A +A +R I + I +G +T S G+ C+ E Sbjct: 423 YGGEEFVVVLPDVDTDGAVAIAETIRTGILDLGIRHDAGMCGRVTASIGVTT-CYPERGD 481 Query: 235 TI---IYRADQALYVAKKSGRNRVVCFS 259 TI + AD ALY AK SGRN+VV + Sbjct: 482 TIQAALKLADDALYRAKASGRNQVVVHT 509 >gi|77747944|ref|NP_638865.2| GGDEF family protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|77761101|ref|YP_241741.2| GGDEF family protein [Xanthomonas campestris pv. campestris str. 8004] Length = 317 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 15/178 (8%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQIND 144 F +Y + ++ D L+GL N F ++ G+ + + DID+FK++ND Sbjct: 126 FQNYRSLLDDAQRDALTGLRNRKTFDDMILRLFAANADGAQENAVWLGIVDIDHFKRVND 185 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-II 203 FGH GD+V+ ++ + F + R GGEEF G A L R+ + Sbjct: 186 TFGHLYGDEVLLLVAQLMQRCFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRRAVA 245 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 E+S + + +T+S GI E +S ++ AD+ALY AK+ GRNR S++ Sbjct: 246 EHSFPQVGT-----VTLSTGIVELSDGRLVSQMLDEADKALYWAKQHGRNRAAVHSEL 298 >gi|264678988|ref|YP_003278895.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|299530046|ref|ZP_07043473.1| diguanylate cyclase [Comamonas testosteroni S44] gi|262209501|gb|ACY33599.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|298722026|gb|EFI62956.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 405 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 7/155 (4%) Query: 106 IDCLSGLLNHSAFISSLGSY--NEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 +D L+ +LN AF + +++L +++ DID+FK+INDN+GH GD+V+ ++ Sbjct: 227 LDALTQILNRRAFSEAAQHRLADQRLYPMALLASDIDHFKRINDNWGHDKGDEVLQLVAR 286 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 + + V R GGEEF Q A +A + + N Q + GP+ +T+ Sbjct: 287 AMQHNVRSNDLVARFGGEEFMVLLTKIDLQGAEQVAKRIGLELRNDQELLPKGPA--LTL 344 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S GI + + + + +ADQ LY AK +GR+RV Sbjct: 345 SFGITSISNADQLEGALRQADQLLYSAKNAGRDRV 379 >gi|258621527|ref|ZP_05716560.1| GGDEF family protein [Vibrio mimicus VM573] gi|258586145|gb|EEW10861.1| GGDEF family protein [Vibrio mimicus VM573] Length = 525 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 106/193 (54%), Gaps = 18/193 (9%) Query: 76 ITISLLLGYISGSILKE-------LFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSY 125 + ISLLLGYI+ +L+E L + L+ D L+G+ N +F +S++ + Sbjct: 314 VIISLLLGYITRLLLEEKTRLEEMLDERTAELRYLAEHDSLTGIYNRRSFNNLLSNMLNS 373 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAA 184 + ++V FDID FKQIND+ GH VGD + + + + + FV R+GG+EFA + Sbjct: 374 GQPFTLVSFDIDCFKQINDSHGHLVGDDALVHVVNLVTQKLLPNDHFV-RMGGDEFAILS 432 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQ 242 + + + +R +E + + I+ G S+ +T+S G I+E ++ S +++ D Sbjct: 433 NVAERETLSNYLESIRATVERNPLVINQG-SVALTVSIGACISEGLNE---SELLHSVDA 488 Query: 243 ALYVAKKSGRNRV 255 LY++K GRNRV Sbjct: 489 QLYLSKTLGRNRV 501 >gi|226940026|ref|YP_002795099.1| Diguanylate cyclase [Laribacter hongkongensis HLHK9] gi|226714952|gb|ACO74090.1| Diguanylate cyclase [Laribacter hongkongensis HLHK9] Length = 350 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 10/175 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 E ++ R+ L D L+GL N F L + + L+ + D D+FK+IND Sbjct: 168 ENVLNRERLKWLGLTDPLTGLYNRRYFEQRLQEEAQRTRRHGDPLACLMLDADHFKRIND 227 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD V+ L+ ++ R+GGEEFA + + ++A +R I Sbjct: 228 TWGHQAGDVVLKVLARRVRQQLRGCDVAARIGGEEFAVLLPSTPVRHVQLVAERIRLAIA 287 Query: 205 NSQINISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +++S + +++S G +A ++ RAD ALY AK++GRNR + Sbjct: 288 GEPVHVSPDCVLQVSVSLGAAMLAPGAADISPERLMARADAALYQAKRNGRNRTM 342 >gi|157374493|ref|YP_001473093.1| GGDEF family protein [Shewanella sediminis HAW-EB3] gi|157316867|gb|ABV35965.1| GGDEF family protein [Shewanella sediminis HAW-EB3] Length = 368 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 9/171 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 +EL + + +LS D L+GL N + L + L+ + D D+FK +N Sbjct: 193 QELIDANAHLEKLSVTDVLTGLPNRRFAMEKLTQLWQESVQSQQPLACMMLDADHFKTVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD+V+ LS +L T V RLGG+EF + +A + + I Sbjct: 253 DTYGHDAGDRVLCELSRELQHAVRTDDIVCRLGGDEFVIICPATDLNGIRHIATQVHEKI 312 Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 ++ SG S +IS G++ R + + S +I RAD+A+Y+AK++G+N Sbjct: 313 AAMTVSFGSG-SWQGSISVGVSSRTDQMQDYSELIKRADEAVYLAKQAGKN 362 >gi|218890494|ref|YP_002439358.1| hypothetical protein PLES_17541 [Pseudomonas aeruginosa LESB58] gi|254236275|ref|ZP_04929598.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126168206|gb|EAZ53717.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|218770717|emb|CAW26482.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] Length = 783 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 22/186 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 ++L +L ++ + Q++R D L+GL N +AF + + + L+++F D+D+FK Sbjct: 329 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 388 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199 +IND+ GH GD+++ +S+++ V V R G+EF A + + EA IL+ L Sbjct: 389 RINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 448 Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253 +K+ E ++ G ++ +T S G++ E+C + ++ A AL+ +K GRN Sbjct: 449 QKMKEPIALD---GRTLVMTASVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 500 Query: 254 RVVCFS 259 FS Sbjct: 501 NAQFFS 506 >gi|322804630|emb|CBZ02182.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Clostridium botulinum H04402 065] Length = 447 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 14/162 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +I L+ D L+GL N I ++ NEK +++F D+D+FK IND GH VGD Sbjct: 22 KILGLAYYDSLTGLSNRKKIIETINKTINNYENEKFAVLFIDLDHFKSINDTLGHDVGDY 81 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQIN 209 V+ +S + ++ +GRLGG+EF ++ +E+ A + L I+ + + Sbjct: 82 VLEKVSARFKMLLSPKHKIGRLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKEDD 141 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + G SI I+I + ST++ AD A+Y AKK+G Sbjct: 142 LFIGASIGISIYPEDGKDT-----STLMKNADAAMYAAKKNG 178 >gi|320157487|ref|YP_004189866.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O] gi|319932799|gb|ADV87663.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O] Length = 626 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 21/173 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGHP 149 R+ LS D L+ + N F L + + + DIDYFK++ND GH Sbjct: 460 RLRNLSERDELTQIWNRRKFEQQLAQHTSLIERYPATPMACLALVDIDYFKRVNDEQGHD 519 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+VI ++ L + R+GGEEFA ++ A ++ N LR + Sbjct: 520 EGDRVIREVAKILQNGLRNTDVLARVGGEEFAIIMPHTTVSAAEVVLNRLR-------VA 572 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFSD 260 +S + +TIS G E ST+ Y+ AD ALY +K SGRN+V +C++D Sbjct: 573 VSISKQVDVTISVGYTELTSN---STLSYKCADIALYDSKSSGRNKVSLCYND 622 >gi|302131918|ref|ZP_07257908.1| GGDEF [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 493 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 15/193 (7%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGS 124 LS+V+ I + L+ + S +L ++ L+R D LSGLLN H ++ L Sbjct: 30 LSMVVPFILLKRLMQRLQSSY-NDLLVAQALSDSLARHDPLSGLLNRRVFHEQLVARLQQ 88 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAA 183 + + ++ D+D FK IND GH VGD I +++ L G V RLGG+EF A Sbjct: 89 ESTRTAVFLIDLDKFKLINDTHGHAVGDAAICAVAESLRDATAGWQASVARLGGDEFGLA 148 Query: 184 ALGSSEQ-EAAILANDLRKIIENSQINISSG--PSIHITISAGIA-ERCHKEPISTIIYR 239 G Q E A LA ++ ++I +SS P + ++ + G+A ++ R Sbjct: 149 VSGDFNQFELATLAENVL-----AKIALSSAVLPRVILSATLGVAISPLDGSDAEVLLQR 203 Query: 240 ADQALYVAKKSGR 252 AD A+Y K SGR Sbjct: 204 ADSAMYRGKHSGR 216 >gi|294666401|ref|ZP_06731647.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603843|gb|EFF47248.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 507 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 18/180 (10%) Query: 96 SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145 S NR+ L+ D L+G+ N ++L E LSI F D+D FK++ND Sbjct: 317 SGNRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDDFKRVNDA 376 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203 GH VGD+V+ + L + T V R GGEEF L ++ +AA++ + L + Sbjct: 377 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPNTPADAALMVIERILAETA 435 Query: 204 ENSQINISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259 + GP +HIT SAG+A E I ++ AD LY +K GRNRV + Sbjct: 436 RTPMAQLQGGP-LHITFSAGLATHGGAERQFDSIDHLLQAADSTLYRSKHRGRNRVTAYD 494 >gi|283788392|ref|YP_003368257.1| hypothetical protein ROD_48701 [Citrobacter rodentium ICC168] gi|282951846|emb|CBG91556.1| putative membrane protein [Citrobacter rodentium ICC168] Length = 354 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 7/172 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNFG 147 L ++ LS +D L+GL N L + E + ++ DID+FK ND++G Sbjct: 177 RLLAEKETLNDLSMLDPLTGLYNRRGLQHRLETLLEIDSHERYVLLIDIDHFKAYNDHYG 236 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD+ + +S + + V R GGEEF S Q+A A +R+ + + Sbjct: 237 HMMGDQALIRVSAAIRDAVRSRDVVARFGGEEFMVLLTASDPQQARAAAERIRQSVYDLS 296 Query: 208 IN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + + ++TIS GIA ++ + I RAD+ALY AK GRN ++ Sbjct: 297 IPHMFNESVATNVTISIGIAPLMERD-VEEAIGRADKALYQAKHLGRNHILV 347 >gi|237797721|ref|ZP_04586182.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806000|ref|ZP_04592704.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020571|gb|EGI00628.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027110|gb|EGI07165.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 545 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL + + + +++ D L+ L N F +SL N L+I+ DID+FKQ ND Sbjct: 357 ELNNTRHELEIIAQTDSLTNLANRRCFDASLQKEWGRASRNNSVLAIILLDIDWFKQYND 416 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199 +GH GD + Q+ + G+ + R GGEEF + A +A + Sbjct: 417 RYGHLKGDDCLM----QVAEILGSCINRSGDLAARYGGEEFVILLAETDLAGALSVAEKV 472 Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R IEN+ I S+ P ++TIS+G+ KE + AD+ LY AK GRNRV Sbjct: 473 RSAIENAFIEHSASPVGNLTISSGVVAISAPEKEDHKAALEEADRLLYSAKTKGRNRV 530 >gi|190576092|ref|YP_001973937.1| putative transmembrane GGDEF signalling protein [Stenotrophomonas maltophilia K279a] gi|190014014|emb|CAQ47654.1| putative transmembrane GGDEF signalling protein [Stenotrophomonas maltophilia K279a] Length = 524 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 10/164 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +++ SR D L+ LLN +L + + +I+ DID FK INDN GH VGD I Sbjct: 362 LNRASRTDPLTSLLNRRGLQQALDALQVQGIPFAILALDIDRFKSINDNHGHDVGDAAIV 421 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +++Q+ + R GGEEF G S + A LR+ I + P Sbjct: 422 HIANQMRRYSRDSDILCRAGGEEFLLLLPGISAESARQAGERLRQHIADHPFE----PVG 477 Query: 217 HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 IT+S G+A H + + AD+ALY+AK+ GRNRVV + Sbjct: 478 TITVSLGVAHFPSFHVD-AEQALRLADKALYLAKEQGRNRVVVY 520 >gi|148257924|ref|YP_001242509.1| putative diguanylate cyclase [Bradyrhizobium sp. BTAi1] gi|146410097|gb|ABQ38603.1| putative diguanylate cyclase (GGDEF) [Bradyrhizobium sp. BTAi1] Length = 377 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 9/151 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL N +AFI++L + +I+ D+D FK IND FGH GD+++ + +L Sbjct: 201 DFLTGLPNRAAFIAALRGLDGPAAIIAIDLDGFKSINDAFGHQAGDELLCQVGARLRQCL 260 Query: 167 GTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITIS 221 G R GG+EF AA A LA R+++ + + + +G + I S Sbjct: 261 GDSGLAARFGGDEFMLLLPVAAAQPGRDAAGALA---RRVVSSLADPFVLAGTRVQIGAS 317 Query: 222 AGIAERCHKEP-ISTIIYRADQALYVAKKSG 251 AGI H+ +I +AD+ALY AK++G Sbjct: 318 AGILLAEHRTAETEALIDQADRALYAAKRAG 348 >gi|146294937|ref|YP_001185361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella putrefaciens CN-32] gi|145566627|gb|ABP77562.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella putrefaciens CN-32] Length = 1216 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 10/182 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 + E +S RI L+ D L+ L N + SSL + +++++F D+D+FK I Sbjct: 777 ISERKMSEERIHFLAHHDSLTLLPNRLSLQSSLEIVFGEALASQSQIAVMFIDMDHFKNI 836 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH VGD+++ ++ +L + V RLGG+EF ++ E A LA LR Sbjct: 837 NDTLGHHVGDQLLLEVARRLKNIVDNNEIVARLGGDEFVVVLSDTNHDEVASLAEALRSG 896 Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + SQ I S+H + S GI+ + ++ AD A+Y AK +GRN F+ Sbjct: 897 L--SQTYIIDNNSLHSSPSIGISLFPTDGNTVEALMKNADMAMYRAKAAGRNNYQFFTAA 954 Query: 262 EN 263 N Sbjct: 955 MN 956 >gi|313202332|ref|YP_004040990.1| diguanylate cyclase [Methylovorus sp. MP688] gi|312441648|gb|ADQ85754.1| diguanylate cyclase [Methylovorus sp. MP688] Length = 601 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 13/166 (7%) Query: 104 SRIDCLSGLLNHSAFISSLG---SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIA 156 S D L+GL N F + S ++ + I+ DID+FK +ND +GH GD + Sbjct: 424 SSTDFLTGLKNRRGFYEAANIEYSRAQRHACESCIMIIDIDHFKTVNDTYGHSAGDWALT 483 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS- 215 F+ L R GGEEF S+ +E + A +R +I+ + ++I GP Sbjct: 484 FIGGILKDNSRIHDISARHGGEEFICMLGNSNLEEGCLFAEKIRTLIQAAMVDI--GPDL 541 Query: 216 --IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I +T+S GI + + P+ +I +AD+ALY+AK GRNRV F Sbjct: 542 APIKLTVSIGITSSQFQHPPLDMMIEQADRALYMAKNLGRNRVQRF 587 >gi|297567483|ref|YP_003686455.1| diguanylate cyclase [Meiothermus silvanus DSM 9946] gi|296851932|gb|ADH64947.1| diguanylate cyclase [Meiothermus silvanus DSM 9946] Length = 354 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 15/165 (9%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QL+ D L+ L N + Y +++ D+D+FK++ND GH +GD Sbjct: 185 MEQLAHTDHLTRLTNRRGLEPLLKQELQRAERYGLPFAVLLADLDHFKEVNDRHGHAIGD 244 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ +L V R GGEEF A + +A LA L ++I + + Sbjct: 245 QVLREVAPRLDHNLRQADTVARWGGEEFLILAPTTDLAQAGQLAERLIEVIRSEPVV--- 301 Query: 213 GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255 SI +TIS G++ C++ + + +++ RAD+ALY AK GRNR+ Sbjct: 302 -GSIPVTISIGVS--CYRAGDSLESLLQRADEALYRAKALGRNRL 343 >gi|144898130|emb|CAM74994.1| sensory box/GGDEF domain protein [Magnetospirillum gryphiswaldense MSR-1] Length = 522 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 14/172 (8%) Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ L N + A + + N +++ D+D FK IND +GH GD Sbjct: 348 LHRLAFKDMLTDLPNRTSLNEELVAAWTEWQNLNTPFAVIALDLDGFKPINDTYGHDAGD 407 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-- 210 V+ + +L V GR+GG+EF G E A LA LR ++EN + Sbjct: 408 AVLRAVGQRLQAVNRHNDVAGRMGGDEFLIILRGCKTAEQA-LAIGLR-VVENLGQEVVL 465 Query: 211 -SSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259 SG + + SAGIA P + + +ADQALY AK++G+N+ F Sbjct: 466 EGSGAVLRVGASAGIAHSAETGPRSLEDMTKQADQALYAAKRAGKNQAALFG 517 >gi|114706340|ref|ZP_01439242.1| diguanylate cyclase [Fulvimarina pelagi HTCC2506] gi|114538201|gb|EAU41323.1| diguanylate cyclase [Fulvimarina pelagi HTCC2506] Length = 376 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 115/248 (46%), Gaps = 13/248 (5%) Query: 26 TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYI 85 T ++ + +++A ++AN + + G +L +++ L + Y+ Sbjct: 129 TMVLTYGSGIVVYVAARPYVANTICIGAAIPAYVGT--VLCSETWRSGMAVVYVLAIVYV 186 Query: 86 SGSILK------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDID 137 + + + EL+ + + + D L+GL N A +L S + ++I+F D+D Sbjct: 187 AKATAQQYRAFFELYRTRKCLRDCALTDALTGLPNRRALDEALDSVPKGSDVAILFIDLD 246 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK +ND FGH GD ++ ++ L FV R GG+EF + + A Sbjct: 247 GFKPVNDTFGHNAGDALLREIAHTLSSSISVAGFVARCGGDEFVVVLRDGNARFVEETAE 306 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +RK I S++ G I S GIA + +++++ AD+A+Y AK++GR R+ Sbjct: 307 SIRKRI--SRLYDFDGGCAEIGASIGIASGTAGQSNLASLVREADEAMYDAKRAGRGRIA 364 Query: 257 CFSDIENN 264 +++ N Sbjct: 365 GYANHAKN 372 >gi|110800306|ref|YP_696472.1| GGDEF domain-containing protein [Clostridium perfringens ATCC 13124] gi|110674953|gb|ABG83940.1| GGDEF domain protein [Clostridium perfringens ATCC 13124] Length = 289 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 4/129 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188 +++ DID FK++ND +GH VGDK++ + L + ++GR GGEEF ++ Sbjct: 162 TVIMTDIDSFKKVNDTYGHLVGDKILRGFAKVLNNNIRENSDWIGRYGGEEFIIVLNNTN 221 Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247 + +A LRKIIE +++ G S+ IT S G+ E KE I AD+ LY+A Sbjct: 222 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 279 Query: 248 KKSGRNRVV 256 K +GRN+ V Sbjct: 280 KMTGRNKTV 288 >gi|15598507|ref|NP_252001.1| hypothetical protein PA3311 [Pseudomonas aeruginosa PAO1] gi|48474660|sp|Q9HYT3|Y3311_PSEAE RecName: Full=Uncharacterized signaling protein PA3311 gi|9949440|gb|AAG06699.1|AE004753_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Length = 783 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 22/186 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 ++L +L ++ + Q++R D L+GL N +AF + + + L+++F D+D+FK Sbjct: 329 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 388 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199 +IND+ GH GD+++ +S+++ V V R G+EF A + + EA IL+ L Sbjct: 389 RINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 448 Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253 +K+ E ++ G ++ +T S G++ E+C + ++ A AL+ +K GRN Sbjct: 449 QKMKEPIALD---GRTLVMTASVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 500 Query: 254 RVVCFS 259 FS Sbjct: 501 NAQFFS 506 >gi|146279345|ref|YP_001169503.1| hypothetical protein Rsph17025_3314 [Rhodobacter sphaeroides ATCC 17025] gi|145557586|gb|ABP72198.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC 17025] Length = 659 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 25/257 (9%) Query: 22 FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITIS 79 S FM++ + S+ I +A IF F G + Y +V L + T Sbjct: 141 LSGGAFMLHRAFVASLAYVWTILLAVIFSFQFGGWAAAWPVTAYAIVYGSYLAYFTYTAG 200 Query: 80 LLLGYISGSI------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------N 126 S+ ++ L + + +L+ ID +GLLN AF +L + Sbjct: 201 RTARQRDESVAALSDAVQSLQQARDENHRLANIDFATGLLNRKAFHEALQASVAHEALSR 260 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AA 184 E ++ D+D FK +ND +GH VGDK++A L+ +L +GR+GG+EFA Sbjct: 261 EPFGLLLLDLDRFKTVNDLYGHGVGDKLLAELAQRLRGALARRDIIGRVGGDEFAVILRD 320 Query: 185 LGSSEQEAAILANDLRKIIENSQIN---ISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 + +E AA+ L+++ ++ I SG SI + G ++P + ++ +AD Sbjct: 321 VADAETTAAVSGRLLKELNRPVRLGGPIIRSGASIGAALCPGDG----RDP-ADLMLKAD 375 Query: 242 QALYVAKKSGRNRVVCF 258 AL AK+ GR R + F Sbjct: 376 LALNRAKEEGRGRAMQF 392 >gi|317402690|gb|EFV83243.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) [Achromobacter xylosoxidans C54] Length = 858 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 10/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI QL+ D L+GL N + I+ ++++++F D+D FKQ+ND GHP+G Sbjct: 428 RIRQLAFYDELTGLPNRNLLLAQAEQAIARAEPERKRVAVLFLDLDRFKQVNDTLGHPIG 487 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ ++ +L + VGRL G+EF L + + A ++ S ++ Sbjct: 488 DALLRDIAQRLRRLARATDIVGRLSGDEF--VMLMPDFEHGRLTAAAEHILVSLSHPFVA 545 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 G +++ ++S GI+ + T++ AD A+Y AK +GRNR+ FS Sbjct: 546 GGITLNPSVSIGISVFPENGRDMDTLLRHADMAMYQAKTAGRNRISFFS 594 >gi|37678681|ref|NP_933290.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|37197421|dbj|BAC93261.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 626 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 21/173 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGHP 149 R+ LS D L+ + N F L + + + DIDYFK++ND GH Sbjct: 460 RLRNLSERDELTQIWNRRKFEQQLAQHTSLIERYPATPMACLALVDIDYFKRVNDEQGHD 519 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+VI ++ L + R+GGEEFA ++ A ++ N LR + Sbjct: 520 EGDRVIREVAKILQNGLRNTDVLARVGGEEFAIIMPHTTVSAAEVVLNRLR-------VA 572 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFSD 260 +S + +TIS G E ST+ Y+ AD ALY +K SGRN+V +C++D Sbjct: 573 VSISKQVDVTISVGYTELTSN---STLSYKCADIALYDSKSSGRNKVSLCYND 622 >gi|315181625|gb|ADT88538.1| hypothetical regulatory components of sensory transduction system [Vibrio furnissii NCTC 11218] Length = 321 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 24/191 (12%) Query: 87 GSILKELFISYNRISQLSRI-------DCLSGLLNHS-------AFISSLGSYNEKLSIV 132 ++ +EL + ++ +L+RI D L+ + N IS G + LS++ Sbjct: 128 ANMRRELKRTSAKLEELNRILQHQANEDGLTQVFNRRFMDEKLREMISWHGRHEMALSVI 187 Query: 133 FFDIDYFKQINDNFGHPVGDK---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 FD+D+FK NDN+GH GD+ IA +++L G FVGR GGEEF + Sbjct: 188 LFDVDHFKPFNDNYGHIEGDRCLHTIAQAANKLFCRSGE--FVGRYGGEEFLILLTNTDV 245 Query: 190 QEAAILANDLRKIIENSQINIS-SGPSIHITISAG---IAERCHKEPISTIIYRADQALY 245 + A A ++ IE+ + S + HITIS G I H E ++ + +AD ALY Sbjct: 246 EGARAAAERIQDSIEHIHYPHAFSAVADHITISQGVVTITPDGH-ETLAQVYEQADNALY 304 Query: 246 VAKKSGRNRVV 256 AK GRNR V Sbjct: 305 QAKSHGRNRYV 315 >gi|296388186|ref|ZP_06877661.1| hypothetical protein PaerPAb_08521 [Pseudomonas aeruginosa PAb1] Length = 726 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 22/186 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 ++L +L ++ + Q++R D L+GL N +AF + + + L+++F D+D+FK Sbjct: 272 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 331 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199 +IND+ GH GD+++ +S+++ V V R G+EF A + + EA IL+ L Sbjct: 332 RINDSLGHDSGDELLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 391 Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253 +K+ E ++ G ++ +T S G++ E+C + ++ A AL+ +K GRN Sbjct: 392 QKMKEPIALD---GRTLVMTASVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 443 Query: 254 RVVCFS 259 FS Sbjct: 444 NAQFFS 449 >gi|254000362|ref|YP_003052425.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase [Methylovorus sp. SIP3-4] gi|253987041|gb|ACT51898.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Methylovorus sp. SIP3-4] Length = 435 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 11/165 (6%) Query: 98 NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++++ L++ D L+ L N S I+ +L+++F D+D FKQIND GH V Sbjct: 265 SKMAHLAQHDYLTNLPNRMLLNDRLSQAITLAERGTSQLAVLFMDLDNFKQINDTLGHVV 324 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQIN 209 GD ++ ++ +L+ + V R GG+EF S ++AA++A+ + + +E + Sbjct: 325 GDAILQSVAKRLIELVRKSDTVSRQGGDEFLMLVDESKHGEDAALIASKILRALEKP--H 382 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 G +H+T S GI+ H T+I AD A+Y AKK GRN Sbjct: 383 AIGGKELHLTASIGISLYPHDGRDAQTLINHADSAMYEAKKQGRN 427 >gi|237507329|ref|ZP_04520044.1| eal/ggdef domain protein [Burkholderia pseudomallei MSHR346] gi|234999534|gb|EEP48958.1| eal/ggdef domain protein [Burkholderia pseudomallei MSHR346] Length = 688 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IN + GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINGSLGHPAGDEVLKTFSQRLLCCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A D+ + + + N G ++ +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARDVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+ GR Sbjct: 406 AAKRGGR 412 >gi|254410317|ref|ZP_05024096.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182523|gb|EDX77508.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 331 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 12/180 (6%) Query: 89 ILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFK 140 +LK N+ + +L +D L+ + N AF +L ++L S++ DID+FK Sbjct: 146 VLKAKLEEMNQELQRLVDLDGLTQIANRRAFDQALQQEWKRLAREQAPLSLILCDIDFFK 205 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND +GH GD+ + ++D L P V R GGEEF +S + A +A + Sbjct: 206 AYNDTYGHQAGDECLKQVADILRKAAKRPADVVARYGGEEFVVILPNTSLRGAMQVAESI 265 Query: 200 R-KIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 R K+ + ++ SG S +T+S G+A K +I ADQALY AK GR+RVV Sbjct: 266 RSKLKSRAIVHEGSGVSKFVTLSCGVAGVIPPPKTTPDRLIAEADQALYKAKVEGRDRVV 325 >gi|34499192|ref|NP_903407.1| hypothetical protein CV_3737 [Chromobacterium violaceum ATCC 12472] gi|34105043|gb|AAQ61399.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 382 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 8/175 (4%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGH 148 + ++ +L+ D L+G N A L E S+ D+D+FKQ+ND FGH Sbjct: 208 ALQQMKKLAESDALTGCYNQRALRERLDRCAEASLASGRPWSLAMLDLDHFKQVNDTFGH 267 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+++ + + + R GGEEFA A E L ++R ++ S + Sbjct: 268 LAGDRLLCQTARLIESRLPEGCILARYGGEEFAVLAPDRDGLELLSLMEEVRTLLSTSSL 327 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + T+S G+ + + + RAD ALY AK+ GRNRV S +++ Sbjct: 328 EGLPVGRVQ-TMSVGVVGCQPGDLVRQCLKRADVALYRAKQGGRNRVCLASPMDD 381 >gi|168210848|ref|ZP_02636473.1| GGDEF domain protein [Clostridium perfringens B str. ATCC 3626] gi|4589924|dbj|BAA76930.1| hypothetical 34.4-kDa protein [Clostridium perfringens] gi|170711147|gb|EDT23329.1| GGDEF domain protein [Clostridium perfringens B str. ATCC 3626] Length = 299 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 4/129 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSS 188 +++ DID FK++ND +GH VGDK++ + L + ++GR GGEEF ++ Sbjct: 172 TVIMTDIDSFKKVNDTYGHLVGDKILRGFAKVLNNNIRENSDWIGRYGGEEFIIVLNNTN 231 Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247 + +A LRKIIE +++ G S+ IT S G+ E KE I AD+ LY+A Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289 Query: 248 KKSGRNRVV 256 K +GRN+ V Sbjct: 290 KMTGRNKTV 298 >gi|166712733|ref|ZP_02243940.1| putative signal transduction protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 547 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 89/180 (49%), Gaps = 20/180 (11%) Query: 96 SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDN 145 S NR+ L+ D L+G+ N ++L E LSI F D+D FK++ND Sbjct: 357 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWPLSIAFIDLDEFKRVNDA 416 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203 GH VGD+V+ + L + T V R GGEEF L ++ ++A++ + L + Sbjct: 417 HGHLVGDEVLRNFAQTLQRLVRTSDLVARYGGEEF-LVILPNTPADSALMVIERILTETA 475 Query: 204 ENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + GP +HIT SAG+A ER E I ++ AD LY +K GRNRV + Sbjct: 476 RTPMAQLPGGP-LHITFSAGLATHGGVER-QFESIEHLLQAADSTLYRSKHRGRNRVTAY 533 >gi|27364103|ref|NP_759631.1| sensory box/GGDEF family protein [Vibrio vulnificus CMCP6] gi|27360221|gb|AAO09158.1| Sensory box/GGDEF family protein [Vibrio vulnificus CMCP6] Length = 626 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 21/173 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFKQINDNFGHP 149 R+ LS D L+ + N F L + + + DIDYFK++ND GH Sbjct: 460 RLRNLSERDELTQIWNRRKFEQQLAQHTSLIERYPATPMACLALVDIDYFKRVNDEQGHD 519 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+VI ++ L + R+GGEEFA ++ A ++ N LR + Sbjct: 520 EGDRVIREVAKILQNGLRNTDVLARVGGEEFAIIMPHTTVSAAEVVLNRLR-------VA 572 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV-VCFSD 260 +S + +TIS G E ST+ Y+ AD ALY +K SGRN+V +C++D Sbjct: 573 VSISKQVDVTISVGYTELTSN---STLSYKCADIALYDSKSSGRNKVSLCYND 622 >gi|26247677|ref|NP_753717.1| hypothetical protein c1815 [Escherichia coli CFT073] gi|91210635|ref|YP_540621.1| hypothetical protein UTI89_C1612 [Escherichia coli UTI89] gi|117623593|ref|YP_852506.1| hypothetical protein APECO1_493 [Escherichia coli APEC O1] gi|227886222|ref|ZP_04004027.1| sensory box-containing diguanylate cyclase [Escherichia coli 83972] gi|237705371|ref|ZP_04535852.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|300971645|ref|ZP_07171518.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1] gi|301046188|ref|ZP_07193362.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1] gi|26108079|gb|AAN80279.1|AE016760_138 Hypothetical protein ydaM [Escherichia coli CFT073] gi|91072209|gb|ABE07090.1| hypothetical protein YdaM [Escherichia coli UTI89] gi|115512717|gb|ABJ00792.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|226900128|gb|EEH86387.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|227836426|gb|EEJ46892.1| sensory box-containing diguanylate cyclase [Escherichia coli 83972] gi|294493987|gb|ADE92743.1| sensory box-containing diguanylate cyclase [Escherichia coli IHE3034] gi|300301845|gb|EFJ58230.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1] gi|300411131|gb|EFJ94669.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1] gi|307627085|gb|ADN71389.1| hypothetical protein UM146_10070 [Escherichia coli UM146] gi|315289073|gb|EFU48471.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3] Length = 430 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++ISS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISSLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|330970419|gb|EGH70485.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 332 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGHPV 150 N + +L+ D L+ N F L N L+ + DID FK +ND +GH Sbjct: 165 NELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDFKLVNDTYGHQE 224 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +++ GR+GGEEFAA G + A +A L++ I+ Sbjct: 225 GDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERLQREIQRQNFQ- 283 Query: 211 SSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 S+G + IT S G+ +P + T+ RAD A+Y AK+ G+N++V Sbjct: 284 SAGTTFSITASQGLTNLGPDDPSLETLYGRADAAMYQAKRQGKNQIV 330 >gi|313108659|ref|ZP_07794658.1| hypothetical protein PA39016_001400021 [Pseudomonas aeruginosa 39016] gi|310881160|gb|EFQ39754.1| hypothetical protein PA39016_001400021 [Pseudomonas aeruginosa 39016] Length = 726 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 22/186 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 ++L +L ++ + Q++R D L+GL N +AF + + + L+++F D+D+FK Sbjct: 272 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 331 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199 +IND+ GH GD+++ +S+++ V V R G+EF A + + EA IL+ L Sbjct: 332 RINDSLGHDSGDELLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 391 Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253 +K+ E ++ G ++ +T S G++ E+C + ++ A AL+ +K GRN Sbjct: 392 QKMKEPIALD---GRTLVMTASVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 443 Query: 254 RVVCFS 259 FS Sbjct: 444 NAQFFS 449 >gi|209965838|ref|YP_002298753.1| hypothetical protein RC1_2560 [Rhodospirillum centenum SW] gi|209959304|gb|ACI99940.1| GGDEF domain protein [Rhodospirillum centenum SW] Length = 315 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 82/165 (49%), Gaps = 17/165 (10%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIA 156 S ID L+GL N + L + I D+D FK +ND +GH GD+V+ Sbjct: 144 SSIDPLTGLRNRTGLYEELEREMNRFRRTGRPFCIALCDLDRFKSVNDTYGHDAGDRVL- 202 Query: 157 FLSDQLVVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 ++ V G F RLGGEE +S E A + LR I Q+ I+ G Sbjct: 203 -VATAGAVNRGIRNFDEAFRLGGEEILILLKDASLTEGAGVLERLRADIAAQQVLIADGR 261 Query: 215 SIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SI +T S G+AE H E + +I AD+ALY AK++GRNRVV Sbjct: 262 SISVTASFGVAEADLTVHPEDLPSI---ADRALYEAKRAGRNRVV 303 >gi|120599088|ref|YP_963662.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|146292841|ref|YP_001183265.1| diguanylate cyclase [Shewanella putrefaciens CN-32] gi|120559181|gb|ABM25108.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|145564531|gb|ABP75466.1| diguanylate cyclase [Shewanella putrefaciens CN-32] gi|319426153|gb|ADV54227.1| diguanylate cyclase [Shewanella putrefaciens 200] Length = 341 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 12/214 (5%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSR---IDCLSGL 112 + +E +L SLV S I + +G + K E+ ++ Q + D L+G Sbjct: 128 FSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVLYDALTGC 187 Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 LN AF + L E ++ DID+FK ND++GH +GD+V+ ++ +L Sbjct: 188 LNRRAFDADFSGMLTQAPEGTCVILVDIDHFKVFNDSYGHQMGDQVLRAVAKRLQESCRD 247 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA--GIAE 226 + + R GGEEFA S + A LA +R+ +E + ISA G+A+ Sbjct: 248 GIKLYRFGGEEFAILVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERIDNISASFGVAQ 307 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 K+ +I +AD+ LY AK+ GRNRV+ S+ Sbjct: 308 WQEKQTGLQLIEKADKLLYEAKRLGRNRVMPISN 341 >gi|254469913|ref|ZP_05083318.1| response regulator PleD [Pseudovibrio sp. JE062] gi|211961748|gb|EEA96943.1| response regulator PleD [Pseudovibrio sp. JE062] Length = 352 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 9/156 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N F SL + LS++ DID+FKQ NDN+GH GD+V+ ++ Sbjct: 180 DELTTLNNRKHFDQSLVRAVKEAEESHAPLSLLISDIDHFKQFNDNYGHQTGDQVLRLVA 239 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSI-H 217 + R GGEEF ++ ++A ++A +RK ++ + S+G ++ Sbjct: 240 LAVKQNVKNNDIACRYGGEEFGIILPRTTIEDAKVIAEKIRKNVVAKELVKRSTGENLGR 299 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ITIS GI+ + +++ RAD ALY AKK+GRN Sbjct: 300 ITISIGISTFRPGDSAESMVSRADLALYAAKKAGRN 335 >gi|291526122|emb|CBK91709.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale DSM 17629] Length = 860 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 10/170 (5%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI + D L+GL N + FI + + ++++ D+D FK IND GH G Sbjct: 430 RIENQANNDFLTGLYNRMRCEQDLAKFIDDSVKNDTRGAMIYIDLDDFKHINDGLGHQYG 489 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ +S+ L V G R+GG+EF GSS + ND+++I Sbjct: 490 DVLLKAISNSLTQVKGIENHCYRMGGDEFIVIVTGSSVDRLESIINDIQQIFVRPW--FL 547 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + TISAG+A + +I RAD AL+ AKK G+NR+ +++ Sbjct: 548 KGEDYYCTISAGVAFFPTDASTVEDVIRRADIALFNAKKEGKNRIEFYNE 597 >gi|238759046|ref|ZP_04620216.1| Sensory box protein [Yersinia aldovae ATCC 35236] gi|238702723|gb|EEP95270.1| Sensory box protein [Yersinia aldovae ATCC 35236] Length = 348 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 15/202 (7%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 LE + ++N SL + ++ L + + ++L I N LS D L+ N Sbjct: 152 LEKLELKNKSLEALVEERTVELREANLRLQQQLKIKKN----LSETDVLTSTANRYLLEK 207 Query: 121 SLG-SYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L YN + LS++ D+D FK IND +GH VGD + + D + +G Sbjct: 208 VLKHEYNRAKRFCQPLSLLSLDVDNFKSINDKYGHIVGDLALTHIVDIIRNNIREVDVLG 267 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GG+EF + EA +A +RK++E I +I++T+S GI E E Sbjct: 268 RWGGDEFMIVLPNTQLDEAKAIAEKIRKLVE----TIPVDSNINVTMSLGIVELQQNESQ 323 Query: 234 STIIYRADQALYVAKKSGRNRV 255 ++ RAD+ LY AK +G+N + Sbjct: 324 DQLLIRADKMLYNAKAAGKNTI 345 >gi|218689330|ref|YP_002397542.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein [Escherichia coli ED1a] gi|218426894|emb|CAR07749.2| putative diguanylate cyclase, GG[D/E]EF domain signalling protein [Escherichia coli ED1a] Length = 410 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++ISS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISSLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|188581340|ref|YP_001924785.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] gi|179344838|gb|ACB80250.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] Length = 700 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 21/227 (9%) Query: 40 ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL--GYISGSI-LKELFIS 96 A ++F+A+ +GL E + E I+S+T L G++S + + E Sbjct: 197 AALVFVADHLRPDLGLDSSAVSEIVHRER----ILSVTTRRLAAGGWVSTFVDVTERRQF 252 Query: 97 YNRISQLSRIDCLSGLLN----HSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVG 151 +I L++ D L+ L N H A +L S E ++++ D+D FK IND FGH G Sbjct: 253 ERQIQHLAQHDLLTDLANRATLHQALTETLASETWESCAVLYIDLDRFKPINDTFGHAAG 312 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209 D+++ ++ +L + RLGG+EFA + Q LA ++I+E N Sbjct: 313 DQLLQEVARRLRRTVRAQDVIARLGGDEFALILRPADPQH---LAGTAQQILEALNQPYA 369 Query: 210 ISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNR 254 + P I I S GIA ++P ++ AD ALY AKK GRNR Sbjct: 370 VRRLP-IRIGASIGIAAAPLTGRDP-DLLLRNADLALYEAKKEGRNR 414 >gi|88861123|ref|ZP_01135757.1| response regulator/GGDEF domain protein [Pseudoalteromonas tunicata D2] gi|88816845|gb|EAR26666.1| response regulator/GGDEF domain protein [Pseudoalteromonas tunicata D2] Length = 412 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 3/127 (2%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + DID+FK INDN+GH GD+V+ L+D + F + + RLGGEEFA S+ Sbjct: 288 LAMIDIDFFKAINDNYGHDAGDEVLKGLADHFRLHF-SEHLIARLGGEEFAVYFKQSTSA 346 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 EA+ R +E + + SS I T+S G+A+ ++ + I+ ADQ LY AK Sbjct: 347 EASQQLEAFRMSVELNSPSFSSK-KIPFTLSIGLAD-SNETNVDAILKIADQYLYQAKSD 404 Query: 251 GRNRVVC 257 GRNR++ Sbjct: 405 GRNRLIT 411 >gi|325917089|ref|ZP_08179322.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325536665|gb|EGD08428.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 713 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 9/165 (5%) Query: 104 SRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL+N I S ++ F D+D+FK +ND FGH VGDK + Sbjct: 282 ARHDALTGLINRREIERRLLHLIEPPQSPQLCHALCFVDLDHFKLVNDTFGHAVGDKFLC 341 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +D + + ++GRLGG+EFA + +A L + ++ + G + Sbjct: 342 HFADVITMQLRPGDWLGRLGGDEFAILLANTDLAQAQALLERMHGVL-GQPWSHQGGRPL 400 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + S G+ E R ++ ++ AD A Y AK+ GRNR+ CF + Sbjct: 401 TPSCSFGVVEIRQGASDLNALMTAADLACYAAKEEGRNRIRCFGE 445 >gi|296284370|ref|ZP_06862368.1| sensory box/GGDEF family protein [Citromicrobium bathyomarinum JL354] Length = 785 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139 GS + E S +I+ L+R D L+GL N SLG + + + + D+D F Sbjct: 340 GSDVTEQRKSSEKIAYLARYDTLTGLPNRLMLNESLGEAMDEARQWRRRCAFIMLDLDRF 399 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILAND 198 K +ND+ GH +GD+++ +S +L + G GRLGG+EFA + + A LA Sbjct: 400 KAVNDSLGHQIGDRLLEQVSRRLSELTGENEICGRLGGDEFAIVMRDAPDSCAVDALA-- 457 Query: 199 LRKIIEN-SQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRN 253 RK+IE SQ ++ + SAG +A R K + ++ AD ALY AK GR Sbjct: 458 -RKVIERLSQPYEVDQHTLFVGASAGSALAPRDGKT-VEELMRNADLALYRAKDGGRG 513 >gi|270262528|ref|ZP_06190799.1| GGDEF domain protein [Serratia odorifera 4Rx13] gi|270043212|gb|EFA16305.1| GGDEF domain protein [Serratia odorifera 4Rx13] Length = 319 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 13/196 (6%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128 + ++ +++ + L++ Y++ SY D L+ L N F L Sbjct: 124 IGMLCVAVGVYLIVHYVNDKYADASIDSYR--------DELTNLPNRRYFRRVLLDLQNV 175 Query: 129 LSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 VFF DID FK+IND +GH +GD+V+ L ++ + R+GGEEFA S Sbjct: 176 NHYVFFIDIDLFKKINDKYGHDIGDEVLRAFGQMLGELYENNVIAARIGGEEFAVIVQTS 235 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 +EA A KI+ ++ + + +T+S G + E +++ R D ALY A Sbjct: 236 VFEEAQSTA---EKILTRAR-ELMVNDEVRLTVSIGAGNKRENESQESLLKRVDIALYQA 291 Query: 248 KKSGRNRVVCFSDIEN 263 K GRNR+ S E+ Sbjct: 292 KSWGRNRIEWASSPEH 307 >gi|209518860|ref|ZP_03267673.1| diguanylate cyclase [Burkholderia sp. H160] gi|209500745|gb|EEA00788.1| diguanylate cyclase [Burkholderia sp. H160] Length = 522 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 22/166 (13%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N L N+ LS++F D+D+FK ND +GH GD+V+ ++ Sbjct: 350 DPLTGLSNRRVLDKRLDDEWRRARRDNKPLSVLFIDVDHFKHFNDTYGHESGDEVLVAVA 409 Query: 160 DQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 D + G V R GGEEFA ++ Q A +A +R+ +E+ + Sbjct: 410 D--CIASGARRSVDLVARYGGEEFAVVLPDTTAQGAFAVAEKIRRKVESEVVVGGPDAPQ 467 Query: 217 HITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGRNRV 255 +T+S G A P +T ++ ADQ LYVAK+ GRNR Sbjct: 468 AVTVSVGCATAL---PAATDGGNGLDLLAAADQQLYVAKEQGRNRT 510 >gi|24215627|ref|NP_713108.1| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] gi|24196784|gb|AAN50126.1| GGDEF family protein [Leptospira interrogans serovar Lai str. 56601] Length = 315 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 97/209 (46%), Gaps = 38/209 (18%) Query: 82 LGYISGSILKELFISYNRISQLS--------------RIDCLSGLLNHSAFISSLG---- 123 L YI+G + E S +ISQL+ D L+ L N AF +L Sbjct: 106 LVYITGRDITETIESNRKISQLATELKDANDKLFEQASTDSLTKLKNRRAFNEALNHLVH 165 Query: 124 -SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 S +K LS++ D D+FK ND FGH GDK++ L+D L + R GGEEF Sbjct: 166 FSQKQKSPLSLLMIDADHFKDYNDTFGHLEGDKILIILADLLTKALRKGDVLARYGGEEF 225 Query: 181 AAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIA--------ERCHK 230 A +SE E ++ L + + N + I IT+S G A + + Sbjct: 226 IVALPLTSEDETIDISERLLQTVREFNWEKRI-------ITVSVGAATYDFNSNSKNINL 278 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259 E +I +AD+ALY +K +GRNR+ FS Sbjct: 279 EYSINLIEQADKALYCSKVNGRNRITHFS 307 >gi|327483913|gb|AEA78320.1| GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 372 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++L+ ++ LS D L+GL N + L + V DID FK +N Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH VGDKV+ +++ L F + V RLGG+EF ++ +A + + I Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I++ + ++S G+A + H E ++ ADQA+Y+AK SG+NRV F Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368 >gi|312962062|ref|ZP_07776559.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6] gi|311283872|gb|EFQ62456.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6] Length = 1092 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 19/203 (9%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 + ++ T LLL S+LK + +I L+ D L+ L N + I+ L Sbjct: 632 ITLNETPCLLLTARDVSLLKN---AQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKR 688 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 +N + +++F D+D+FK IND+ GHPVGD V+ ++ +L V RLGG+EF Sbjct: 689 HNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFVVLL 748 Query: 185 LG------SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTII 237 G ++ L + LR+++ S+ G + +T S G+A H + ++ Sbjct: 749 SGLDGSRTQVSKQVQALTDTLRELL--SEPMFLDGQRLQVTPSIGVALIPDHGSTPADLL 806 Query: 238 YRADQALYVAKKSGRNRVVCFSD 260 RAD ALY AK SGRN F + Sbjct: 807 KRADIALYRAKDSGRNTTQMFHN 829 >gi|308050516|ref|YP_003914082.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] gi|307632706|gb|ADN77008.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] Length = 521 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 87/193 (45%), Gaps = 13/193 (6%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----- 124 S+ + ++ L SG K+ I R++ L D L+ L N +A L Sbjct: 331 SMEKMRKELTALASEASG--YKDQLIEQQRLNML---DALTQLPNRAALDERLKREYRNV 385 Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 Y L + DID+FK IND+FGH GDK + ++ L FV R GGEEF Sbjct: 386 RRYGNDLWVAVADIDHFKGINDSFGHTTGDKTLQVVAMALKNSLRKGEFVARYGGEEFVL 445 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 S ++ + N R+ I+ + + ITIS G A E + RAD Sbjct: 446 LLPDVSAEQVGQILNRTRERIKAIPFKFRN-EKLSITISIGAALVTGNETMQETFERADA 504 Query: 243 ALYVAKKSGRNRV 255 ALY AK+ GR+RV Sbjct: 505 ALYRAKRKGRDRV 517 >gi|298488422|ref|ZP_07006453.1| predicted diguanylate cyclase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157047|gb|EFH98136.1| predicted diguanylate cyclase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 359 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 21/233 (9%) Query: 31 FSIFFSIFIATVIFIANIFL--FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG- 87 S+FF FI V A I+L + LT G+++ LS V + I+ +LL G ++ Sbjct: 108 MSVFFVKFIDYVAAAALIWLIMWQTDLTAV-GVDH---APLSYVFL-ISSTLLGGSLNAT 162 Query: 88 --SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVF--FDIDYFK 140 S++ + + +R +LS D L+ N A ++SL + ++K S+ F D+D FK Sbjct: 163 FLSLVMQTMAASDRYQKLSETDTLTNAPNRRALVTSLDNALTSDDKSSLWFAMLDLDNFK 222 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 INDN GH VGD V+ + + G F GRLGGEEF S AA + Sbjct: 223 SINDNHGHDVGDNVLICFATLIKSTTGLVSF-GRLGGEEFGVML---SAANAADAIAAMD 278 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ ++Q + + + SAGIA + ++ ++ AD+ LY+AK+SGR Sbjct: 279 HLLMHAQKD--QAAKMPYSFSAGIASLARAKNVNDLLKEADENLYLAKRSGRQ 329 >gi|295097752|emb|CBK86842.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 694 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 17/204 (8%) Query: 64 ILVENLSLVIISIT--ISLLLGYISG--SILKELFISYNR-ISQLSRIDCLSGLLNH--- 115 ILV ++L I+ IT +S+ + S+L NR ++QL+ D L+ L N Sbjct: 216 ILVSVVALAILGITLLVSMFDARLQARTSLLASSLAEANRELAQLALHDTLTRLPNRILL 275 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 IS +++F D+D FK +ND +GH VGDK++ ++ +L++ Sbjct: 276 EDRLDQAISKADREGSPFALMFMDLDGFKTVNDAYGHDVGDKLLVAVTQRLLLQLKGQYT 335 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK 230 + R+GG+EF A ++ +AA LAN L ++I++ P + +T+S GIA H Sbjct: 336 LARIGGDEFVLLAETATPDDAASLANSLVRVIDSP---FHLDPYELMVTLSIGIALYPHD 392 Query: 231 -EPISTIIYRADQALYVAKKSGRN 253 + +++ AD A+Y K GRN Sbjct: 393 GKTDRELMFNADAAMYHTKHMGRN 416 >gi|288923298|ref|ZP_06417434.1| diguanylate cyclase [Frankia sp. EUN1f] gi|288345358|gb|EFC79751.1| diguanylate cyclase [Frankia sp. EUN1f] Length = 431 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 18/207 (8%) Query: 66 VENLSLVIISITISLLLGYISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAF 118 +E + L+ + +SL + GS+ + EL + R+ QLS D L+GL N Sbjct: 206 LEGIILIAGQLAVSLDNARVYGSLERKVAERTEELAAANRRLEQLSVTDPLTGLANRRHL 265 Query: 119 ISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 L + L++ DID FK ND+FGH GD+ + ++ L Sbjct: 266 DEVLDIEWHRAQRHTTPLALAMIDIDRFKSYNDHFGHAAGDRCLQRVAACLAAGTRDTDL 325 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE--RC 228 R GGEEFA G+ +A+ +A+ LR + E ++ + + + +T+S G+A Sbjct: 326 TARYGGEEFAVVMPGADTGDASRIAHRLRSAVAELTEPHPVTTNQV-VTVSIGVASIAPT 384 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRV 255 E ++ AD ALY AK GRN+V Sbjct: 385 PTEEAKALVELADSALYRAKSGGRNQV 411 >gi|21114786|gb|AAM42789.1| GGDEF family protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572311|gb|AAY47721.1| GGDEF family protein [Xanthomonas campestris pv. campestris str. 8004] Length = 326 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 15/178 (8%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQIND 144 F +Y + ++ D L+GL N F ++ G+ + + DID+FK++ND Sbjct: 135 FQNYRSLLDDAQRDALTGLRNRKTFDDMILRLFAANADGAQENAVWLGIVDIDHFKRVND 194 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-II 203 FGH GD+V+ ++ + F + R GGEEF G A L R+ + Sbjct: 195 TFGHLYGDEVLLLVAQLMQRCFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRRAVA 254 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 E+S + + +T+S GI E +S ++ AD+ALY AK+ GRNR S++ Sbjct: 255 EHSFPQVGT-----VTLSTGIVELSDGRLVSQMLDEADKALYWAKQHGRNRAAVHSEL 307 >gi|86357223|ref|YP_469115.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] gi|86281325|gb|ABC90388.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] Length = 448 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 20/176 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGH 148 S + ++ D L+G+LN + + E K++++ FD+D+FK++ND FGH Sbjct: 239 SERHLRTMTLTDSLTGVLNRRGLLGYFDAIQERAHNEQRKVAVILFDLDHFKRVNDRFGH 298 Query: 149 PVGDKVI---AFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GD V+ A ++ Q + P + GR+GGEEFAA A + + EA +A +R E Sbjct: 299 QSGDAVLTAFARMARQYI-----PHHIFGRMGGEEFAAFAAVADQTEAEAIAEAIRT--E 351 Query: 205 NSQINISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258 ++ IS+G +I T+S GIA E I +I AD+ALY AK +GRN V F Sbjct: 352 FCRLPISTGEAIVPATVSIGIALSSSIEANIDKLISAADRALYAAKAAGRNCTVTF 407 >gi|313623149|gb|EFR93412.1| ggdef domain-containing protein [Listeria innocua FSL J1-023] Length = 219 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 15/202 (7%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123 VE + ++ +LL+ Y I K + N +++ + D L+ L N F Sbjct: 15 VEIIEYFLLFFVTALLVFYACNYIDKSNLVIQN-LTETAMTDSLTNLPNMRFFTQQFAWI 73 Query: 124 -----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGG 177 + LS+ DID+FK+IND GH G+ V+A S L F R+GG Sbjct: 74 FNKSQKRKKALSLFIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGG 133 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPIST 235 EEFA ++AA++A+ LR IE ++ N SG ++T+S G+A + + Sbjct: 134 EEFAVLLQNVGTEQAALIADFLRDEIERAKFPYNPVSG---NVTVSIGVASMGYNYRTTE 190 Query: 236 IIYR-ADQALYVAKKSGRNRVV 256 ++ ADQALY AK++GRN++ Sbjct: 191 SLFEAADQALYQAKQNGRNQIA 212 >gi|188992136|ref|YP_001904146.1| hypothetical protein xccb100_2741 [Xanthomonas campestris pv. campestris str. B100] gi|167733896|emb|CAP52102.1| Conserved hypothetical protein with GGDEF domain [Xanthomonas campestris pv. campestris] Length = 376 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 8/175 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 +L L I + + + D L+GL N F +L L + DID+FK Sbjct: 200 ELLTRLRIKSDAFERQAHEDALTGLPNRRHFDEALARDLSRARRSGRPLVLAILDIDHFK 259 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND + H GD V+ + L RLGGEEFA ++ ++A L +R Sbjct: 260 RINDQYSHASGDAVLHDVGVLLTAAARASDLPARLGGEEFALLLSDTTLEQAHALCLRIR 319 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ + + +T SAG+AE +E S+++ RAD ALY AK +GR+R+ Sbjct: 320 AQF-HARHDWGGVEGLQVTFSAGLAELGEEESGSSLMQRADHALYEAKSAGRDRI 373 >gi|299532444|ref|ZP_07045835.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298719529|gb|EFI60495.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 648 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 12/160 (7%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N FI+ +++ F D+D FK +ND +GH GD V+ ++ Sbjct: 472 DALTGLANRRFINKQMQQFIALADRDQGTVAVCFIDLDGFKSVNDTYGHDAGDIVLKTVA 531 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--SGPSIH 217 ++L T V RLGG+EF G + E A+ +++ ++ +I I+ G + Sbjct: 532 ERLTSAVRTHDCVARLGGDEFVVVLTGRNNHENAV--QTMQRCLDMVRIPIAVEDGHTAI 589 Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + S GIA KE +++ RAD+A+Y+AK +G+ R++ Sbjct: 590 VGCSIGIAYYEGEKESCDSLLERADEAMYLAKNAGKGRII 629 >gi|209542978|ref|YP_002275207.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter diazotrophicus PAl 5] gi|209530655|gb|ACI50592.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter diazotrophicus PAl 5] Length = 772 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 7/170 (4%) Query: 96 SYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 S RI Q++ D L+GL N H LG+ ++ ++F D+D FK +ND GH +G Sbjct: 334 SERRIFQMAHYDILTGLPNRITFHEELDKRLGTPGNRVGLLFVDLDGFKLVNDTRGHRIG 393 Query: 152 DKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D ++ ++ +L +P VGRLGG+EFA + +EAA+LA + + + ++ Sbjct: 394 DILLTQVASRLRATCNSPATVVGRLGGDEFAVLVPHDNAEEAALLAARVVAFL-SEPYDL 452 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 SI IT S GIA H E T++ RAD AL+VAK +G+ F Sbjct: 453 DYDRSIQITASVGIALAPLHGEDGETLLSRADIALHVAKTAGKGEFRMFQ 502 >gi|157737153|ref|YP_001489836.1| GGDEF domain-containing protein [Arcobacter butzleri RM4018] gi|157699007|gb|ABV67167.1| GGDEF domain protein [Arcobacter butzleri RM4018] Length = 371 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 10/164 (6%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L AF SS N + +++FFD+D+FK +ND++GH GD V++ Sbjct: 209 DHLTGVLTRRAFSDEIKRIESSYNRINTQYAVIFFDLDHFKILNDSYGHECGDVVLSTFG 268 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHI 218 L VGR GGEEF A + +E ++ I+ ENS + I I Sbjct: 269 KILNKTVREHDLVGRYGGEEFIAIIHFNLNRELLQFLKRIKTIVTENS--FLYQDKKIRI 326 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 T SAG+A R + +AD LY AK+SGRN+++ + +E Sbjct: 327 TFSAGVAIRNSYPTYENALQKADALLYKAKESGRNKILLENGME 370 >gi|117621202|ref|YP_857304.1| diguanylate cyclase/phosphodiesterase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562609|gb|ABK39557.1| diguanylate cyclase/phosphodiesterase domain 1 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 379 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 91/183 (49%), Gaps = 12/183 (6%) Query: 78 ISLLLG-YISGSILKELFISYNRIS--QLSRIDCLSGLLNHSAFISSLGS--YNEKLSIV 132 +S+L+G Y+S + L Y ++ Q + D L+GLLN F+ + E ++ Sbjct: 198 LSMLMGSYLSTFGVLLLCTQYRALALRQQASHDPLTGLLNRRGFMELMARRRMTEFGALA 257 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D FKQIND GH +GD+V+A + L + R GGEEF L E EA Sbjct: 258 VLDLDDFKQINDRHGHEMGDRVLAAVGAYLGA--QQELVASRFGGEEFVL--LLPQEDEA 313 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +II + G I IT+S G+ H T+ +AD+ALY AK+ G+ Sbjct: 314 A-QQQRCEQIIRSLAAQDMQG--IGITVSMGLVRCQHSWHFDTLFSQADRALYQAKREGK 370 Query: 253 NRV 255 NRV Sbjct: 371 NRV 373 >gi|225593139|gb|ACN96057.1| response regulator [Fischerella sp. MV11] Length = 342 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 21/187 (11%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDY 138 G + K+L + + QL+ D L+GL N F L +S++ DID+ Sbjct: 157 QGQVYKQLEAANQALQQLANEDGLTGLANRRRFDQYFNSQWLELAQQRSPISLILCDIDF 216 Query: 139 FKQINDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 FK ND +GHP GD KV L D V R GGEEFA + ++ A Sbjct: 217 FKLYNDKYGHPAGDICLQKVANVLKD---TAQKYQDLVARYGGEEFAVILPHTHDRGAVH 273 Query: 195 LANDLRKIIENSQINISSGPSIH--ITISAGIA---ERCHKEPISTIIYRADQALYVAKK 249 +A ++ + +I + SG ++ +T+S GIA P++ +I AD+ALY AK Sbjct: 274 VAAAMQAGVRELEI-VHSGSTVSQFVTLSLGIATIIPNFETSPLA-LIEAADKALYQAKA 331 Query: 250 SGRNRVV 256 GRNR++ Sbjct: 332 EGRNRII 338 >gi|269963330|ref|ZP_06177661.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831969|gb|EEZ86097.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 475 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 100/191 (52%), Gaps = 12/191 (6%) Query: 88 SILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIV--FFDIDYFKQ 141 S L + + NR + + + D L+GL N + +S S + K+ I F DID+FK+ Sbjct: 285 SHLVDKVVRKNRELDDMVKHDPLTGLYNRRSLEASFRSLCYQSNKMFIACFFIDIDHFKE 344 Query: 142 INDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND+ GH GDK + ++ L T + RLGGEEF A +EA N LR Sbjct: 345 FNDHRGHLQGDKALQKVAKTLESFAVQTHGYALRLGGEEFVVLAPVHDAREALARGNQLR 404 Query: 201 KIIENSQINISSGPSI-HITISAGI--AERCHKEPI--STIIYRADQALYVAKKSGRNRV 255 ++ +I P+I ++TIS GI +ER + I + ++ +D+ALY AK GR++V Sbjct: 405 GRVKQLEIIHHDEPTIKYLTISIGISLSERAQADIIDPNRLLDESDEALYAAKDLGRDQV 464 Query: 256 VCFSDIENNTC 266 V +S+ ++ Sbjct: 465 VLYSNESRDSA 475 >gi|332140487|ref|YP_004426225.1| diguanylate cyclase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550509|gb|AEA97227.1| diguanylate cyclase [Alteromonas macleodii str. 'Deep ecotype'] Length = 299 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 +S R+ Q++ D L+GL N + F S+ ++E +++ D+D FK +NDNFG Sbjct: 133 LSLTRVQQMATKDILTGLGNRAGFEQSMTRQLGWAQRHDEPFALLVIDLDNFKFVNDNFG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GDKV+ ++ L V V R GG+EF ++Q+ A ++ I +S+ Sbjct: 193 HGEGDKVLIHVASHLSNVLRDEDEVFRYGGDEFCCLLDCQTQQQLTCAAQRIQASINSSK 252 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G ++ S G A + IST+ RAD ALY K SG+N Sbjct: 253 YLSQLG----VSTSLGGAIYRDGDTISTLFDRADNALYHVKNSGKN 294 >gi|162148350|ref|YP_001602811.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786927|emb|CAP56510.1| putative signalling protein, GGDEF family [Gluconacetobacter diazotrophicus PAl 5] Length = 772 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 7/170 (4%) Query: 96 SYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 S RI Q++ D L+GL N H LG+ ++ ++F D+D FK +ND GH +G Sbjct: 334 SERRIFQMAHYDILTGLPNRITFHEELDKRLGTPGNRVGLLFVDLDGFKLVNDTRGHRIG 393 Query: 152 DKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D ++ ++ +L +P VGRLGG+EFA + +EAA+LA + + + ++ Sbjct: 394 DILLTQVASRLRATCNSPATVVGRLGGDEFAVLVPHDNAEEAALLAARVVAFL-SEPYDL 452 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 SI IT S GIA H E T++ RAD AL+VAK +G+ F Sbjct: 453 DYDRSIQITASVGIALAPLHGEDGETLLSRADIALHVAKTAGKGEFRMFQ 502 >gi|146337354|ref|YP_001202402.1| hypothetical protein BRADO0187 [Bradyrhizobium sp. ORS278] gi|146190160|emb|CAL74152.1| conserved hypothetical protein; putative signal peptide, putative diguanylate cyclase (GGDEF) domain [Bradyrhizobium sp. ORS278] Length = 565 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 96/189 (50%), Gaps = 16/189 (8%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139 G +EL + +R++ ++ ID LSGL N F + + LS++ D+D+F Sbjct: 368 GQRERELVAANDRLTVMASIDMLSGLANRRGFQNRIDVEWDRAQQTGSDLSLLMIDVDHF 427 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 K ND +GHP GD ++ L + L + G T F GR GGEEF G S ++A + Sbjct: 428 KLYNDTYGHPEGDACLSRLGETLAQIAGATTAFAGRYGGEEFCLLLPGMSARQALEIGEL 487 Query: 199 LRKIIENSQINISSGPSIH--ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254 +R + ++ + S+H +T+S G+A ++ +I AD ALY AK GRN Sbjct: 488 VRAAV--LELELPHATSVHQCVTVSVGVASTRPNAALTPADLIEAADAALYAAKHRGRNT 545 Query: 255 VVC--FSDI 261 VV F D+ Sbjct: 546 VVAHGFGDV 554 >gi|320158085|ref|YP_004190463.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] gi|319933397|gb|ADV88260.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] Length = 639 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 15/179 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQIND 144 S+ +EL R++ ++ D L+GL N S SL S +++ ++F D+D FK +ND Sbjct: 466 SVEREL----KRLNYVANHDPLTGLANRSHAFQSLQSEHDQGKDQYLLFLDLDGFKAVND 521 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH +GD ++ ++ +L V RL G+EF ++A + +I+E Sbjct: 522 QFGHAIGDDLLRVVAKRLKNSVFNRDLVARLAGDEFLIGI-----RDAHTYVPVVERILE 576 Query: 205 NSQINIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 Q IS G +T S G++ K+ +S I+ AD+A+YVAK+ G+N+ C D Sbjct: 577 QLQQPISIDGCLCDVTASIGVSHWAVKDGVSLEERIHHADEAMYVAKRLGKNQYCCLQD 635 >gi|315636862|ref|ZP_07892086.1| GGDEF domain protein [Arcobacter butzleri JV22] gi|315478692|gb|EFU69401.1| GGDEF domain protein [Arcobacter butzleri JV22] Length = 371 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 10/164 (6%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+L AF SS N + +++FFD+D+FK +ND++GH GD V++ Sbjct: 209 DHLTGVLTRRAFSDEIKRIESSYNRINTQYAVIFFDLDHFKILNDSYGHECGDVVLSTFG 268 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHI 218 L VGR GGEEF A + +E ++ I+ ENS + I I Sbjct: 269 KILNKTVREHDLVGRYGGEEFIAIIHFNLNRELLQFLKRIKTIVTENS--FLYQDKKIRI 326 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 T SAG+A R + +AD LY AK+SGRN+++ + +E Sbjct: 327 TFSAGVAIRNSYPTYENALQKADALLYKAKESGRNKILLENGME 370 >gi|315644687|ref|ZP_07897818.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Paenibacillus vortex V453] gi|315279946|gb|EFU43245.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Paenibacillus vortex V453] Length = 673 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 7/172 (4%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 +F + + +L+ D ++GL N + F S S EK+S++F D+D FK IND GH Sbjct: 234 MFFDRHVLEKLAYQDTITGLPNRNEMNRFFES-NSETEKISVLFLDLDQFKAINDTLGHH 292 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD ++ + ++L V R+GG+EF S A LA D+ + I+N + Sbjct: 293 VGDMLVQEVGNRLRQFIQGYQQVFRIGGDEFLIILKQSDPMYAQRLAEDILQKIKN--VY 350 Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G +++T S GI+ H ST++ AD A+Y AK G+N+ +++ Sbjct: 351 FIDGNELYVTGSIGISIGSVHSSDRSTLLKNADTAMYKAKGLGKNQQCLYTE 402 >gi|313202318|ref|YP_004040976.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase [Methylovorus sp. MP688] gi|312441634|gb|ADQ85740.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Methylovorus sp. MP688] Length = 435 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 11/165 (6%) Query: 98 NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++++ L++ D L+ L N S I+ +L+++F D+D FKQIND GH V Sbjct: 265 SKMAHLAQHDYLTNLPNRMLLNDRLSQAITLAERGTSQLAVLFMDLDNFKQINDTLGHVV 324 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQIN 209 GD ++ ++ +L+ + V R GG+EF S ++AA++A+ + + +E + Sbjct: 325 GDAILQSVAKRLIELVRKSDTVSRQGGDEFLMLVDESKHGEDAALIASKILRALEKP--H 382 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 G +H+T S GI+ H T+I AD A+Y AKK GRN Sbjct: 383 AIGGKELHLTASIGISLYPHDGRDAETLINHADSAMYEAKKQGRN 427 >gi|296157609|ref|ZP_06840444.1| response regulator receiver modulated diguanylate cyclase [Burkholderia sp. Ch1-1] gi|295892381|gb|EFG72164.1| response regulator receiver modulated diguanylate cyclase [Burkholderia sp. Ch1-1] Length = 370 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 10/176 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 ++L + + +L+ D L+GL N L + + L + D+D FK N Sbjct: 192 QQLLATNLELQRLTHSDGLTGLSNRRYLDQYLAAEWRRGTRDKAGLGFLMIDVDNFKAYN 251 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD+V+ ++ + G +P R GGEEFA G+S +LA +R Sbjct: 252 DTYGHVAGDEVLKRVAQTVESCLGRSPDLAARFGGEEFAVVVPGTSAGGLRLLAEKIRMA 311 Query: 203 IENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IE+ I + S +TIS G A EP++ +I AD LY AK+ G+N+V Sbjct: 312 IEDLAIPHAGSASGVVTISIGAATLVPSAAEPVTKLIEAADVGLYRAKRDGKNQVA 367 >gi|322417841|ref|YP_004197064.1| diguanylate cyclase [Geobacter sp. M18] gi|320124228|gb|ADW11788.1| diguanylate cyclase [Geobacter sp. M18] Length = 408 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 20/202 (9%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISS 121 +++++ IS LL S +KEL + + + ID L+G+ N F + Sbjct: 212 AILVVVFGISFLL---MRSGIKELKEIQEVLRKQTLIDGLTGIFNKRQIELIGRREFARA 268 Query: 122 L-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 L G + ++ + DID FK +ND +GH GD ++ ++++ + VGR G Sbjct: 269 LRRREKGLADAEVGFIMIDIDRFKLMNDRYGHLAGDVLLQQFAERVTSCLRSYDSVGRFG 328 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPIS 234 GEEF GS ++ +A+ + +I + + P + ++ SAG+A ER E + Sbjct: 329 GEEFLVVLPGSDLEQTRSVAHKIWALIRDEPFRVEGKP-LQLSTSAGVATVERGD-EDLL 386 Query: 235 TIIYRADQALYVAKKSGRNRVV 256 ++ RADQ+LY AK GR+RV+ Sbjct: 387 QVLKRADQSLYRAKSEGRDRVI 408 >gi|253996746|ref|YP_003048810.1| diguanylate cyclase [Methylotenera mobilis JLW8] gi|253983425|gb|ACT48283.1| diguanylate cyclase [Methylotenera mobilis JLW8] Length = 328 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 81/171 (47%), Gaps = 25/171 (14%) Query: 107 DCLSGLLN---------------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 D L+GLLN HS N+K + FDID+FK+IND FGH +G Sbjct: 145 DTLTGLLNRKTFDFKISKILAQMHSGTNRKDDKANQKYFLAIFDIDHFKRINDQFGHLIG 204 Query: 152 DKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 D+V+ S + F P+F R GGEEF +S + + ++ + N + Sbjct: 205 DEVLLMFSQLMRQSFREADPLF--RFGGEEFVGFFECNSTPDIQNIFERFKQKVANFEF- 261 Query: 210 ISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P + +++SAG E + S II RAD ALY AK GRNRV + Sbjct: 262 ----PQVGKVSVSAGFTEISPFDTSSQIIDRADTALYYAKNHGRNRVDSYE 308 >gi|229592511|ref|YP_002874630.1| putative signaling-like protein [Pseudomonas fluorescens SBW25] gi|229364377|emb|CAY52152.1| putative signalling-related protein [Pseudomonas fluorescens SBW25] Length = 395 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 5/127 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS++ DID FK IND +GH VGD+ + + + L + R GG+EF +S Sbjct: 272 LSLIAMDIDDFKPINDRYGHGVGDQTLVRVVECLEHAIRPDDLLARWGGDEFVLVLPKTS 331 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 + A LA +R+ ++ N+ SG IT+S G+A+R E + ++ RADQALY AK Sbjct: 332 LEVATALAERIRQTLK----NLPSG-DFKITLSLGVAQRKAHEAPAALMMRADQALYRAK 386 Query: 249 KSGRNRV 255 +G++ V Sbjct: 387 AAGKDGV 393 >gi|187920208|ref|YP_001889239.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] gi|187718646|gb|ACD19869.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] Length = 493 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 13/178 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142 L+E + +++L++ D L+G+ N A L + E+L S++F D D+FKQ Sbjct: 316 LREHVKTQVLLTELTQTDPLTGVRNRRALDEFLENEWERLRRNESCLSVLFIDADHFKQY 375 Query: 143 NDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND++GH GD + L+ + G R GGEEF + E A +A + Sbjct: 376 NDSYGHAQGDLALKHLAACIRRHACRRGD--LTARYGGEEFVVVLPDTDETGAMQVAEAI 433 Query: 200 RKIIENSQINISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 R +E+ I++S ++I R + ++ + +AD ALY AK+ GRN VV Sbjct: 434 RHEVESGPIHLSESLARFTVSIGCATGRRAYPRSLAELTNKADSALYAAKRGGRNAVV 491 >gi|126730278|ref|ZP_01746089.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Sagittula stellata E-37] gi|126709011|gb|EBA08066.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Sagittula stellata E-37] Length = 487 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 9/135 (6%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + + S++ D+D+FK IND +GH +GD+V+ ++ L V G + R+GGEEFA Sbjct: 326 DAQASLILIDVDHFKSINDAYGHDMGDRVLTNVARSLETVIGANRRLYRVGGEEFAVILP 385 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST----IIYRAD 241 GS AAI+A +R+ + + S PS +T S G+AE +P T + AD Sbjct: 386 GSCADSAAIMAEQMRQRLAEAPDLASDMPS--VTASFGVAE---LDPDITSQDAWVKCAD 440 Query: 242 QALYVAKKSGRNRVV 256 ALY +K +GRN+V Sbjct: 441 IALYASKNNGRNQVT 455 >gi|315295348|gb|EFU54678.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1] Length = 430 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++ISS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISSLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|312884496|ref|ZP_07744200.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367808|gb|EFP95356.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122] Length = 399 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 93/167 (55%), Gaps = 16/167 (9%) Query: 103 LSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+ L N + F + + LS+V DID+FK NDN+GH GDK + Sbjct: 213 LAEQDALTKLKNRTFFNQKIVKVWRLSHKKQQPLSVVILDIDHFKAYNDNYGHIAGDKAL 272 Query: 156 AFLSD--QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQI--NI 210 ++ + + + F R+GGEEF A L +E E+A+ +AN +R+ +E++ I Sbjct: 273 RKIAKCIKQINLESEHSFFARVGGEEF-IAVLPDTEVESAVSIANLIREKVEDAAIPHEF 331 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 SS +I +TISAG++ + S +I +D+ALY AK+ GRNRV Sbjct: 332 SSCSNI-VTISAGVSSIIPPKGRSFIELIEMSDKALYQAKEGGRNRV 377 >gi|254000375|ref|YP_003052438.1| diguanylate cyclase [Methylovorus sp. SIP3-4] gi|253987054|gb|ACT51911.1| diguanylate cyclase [Methylovorus sp. SIP3-4] Length = 606 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 13/166 (7%) Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S D L+GL N F + + + I+ DID+FK +ND +GH GD + Sbjct: 429 SSTDFLTGLKNRRGFYEAANIEYARAQRHACESCIMIIDIDHFKTVNDTYGHSAGDWALT 488 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS- 215 F+ L R GGEEF S+ +E + A +R +I+ + ++I GP Sbjct: 489 FIGGILKDNSRIHDISARHGGEEFICMLGNSNLEEGCLFAEKIRTLIQAAMVDI--GPDL 546 Query: 216 --IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I +T+S GI + + P+ +I +AD+ALY+AK GRNRV F Sbjct: 547 RPIKLTVSIGITSSQFQHPPLDMMIEQADRALYMAKNLGRNRVQRF 592 >gi|226364222|ref|YP_002782004.1| hypothetical protein ROP_48120 [Rhodococcus opacus B4] gi|226242711|dbj|BAH53059.1| hypothetical protein [Rhodococcus opacus B4] Length = 399 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 16/159 (10%) Query: 107 DCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GLLN +A L E +F D+D FK++ND GH VGD+++ +S+ L Sbjct: 245 DSLTGLLNRAAITEHLQRLFEPGVAPAVALFLDVDGFKEVNDTRGHRVGDRILQAVSEHL 304 Query: 163 VVVFGTPMFVGRLGGEEFAA-----AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 TP VGRLGG+EF A L + A +LA+ I ++ + Sbjct: 305 RHAMRTPSAVGRLGGDEFVAILPDVDELDVDDVVARMLASITTPIDVGDELLV------- 357 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A + +++ AD ALY AK+ G N V Sbjct: 358 VTLSVGMAHSTSARTVDELLHHADIALYAAKRRGGNTAV 396 >gi|193215757|ref|YP_001996956.1| diguanylate cyclase/serine/threonine protein kinase [Chloroherpeton thalassium ATCC 35110] gi|193089234|gb|ACF14509.1| diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Chloroherpeton thalassium ATCC 35110] Length = 604 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 10/176 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 +L++L + + +R D L+ L N F Y L++V DID+FK Sbjct: 429 ELLEKLREQAEALDRQAREDALTKLANRRHFDQRFAEEFERAERYGHHLTMVISDIDFFK 488 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND + H +GD+V+ ++ + V R GGEEF + ++ A+ +R Sbjct: 489 KINDKYSHQIGDEVLKQMAKIFTSSCRSVDLVARYGGEEFVFLFPETPLEKGAMACEKIR 548 Query: 201 KIIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 K +E+ + SS + +TIS G+ E E ++ +AD+ LY AK +GRN+V Sbjct: 549 KNVES--FDWSSIAKGLKVTISLGLCENKMVEKREEMVTKADEKLYEAKNNGRNQV 602 >gi|45657014|ref|YP_001100.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600251|gb|AAS69737.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 315 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 97/209 (46%), Gaps = 38/209 (18%) Query: 82 LGYISGSILKELFISYNRISQLS--------------RIDCLSGLLNHSAFISSLG---- 123 L YI+G + E S +ISQL+ D L+ L N AF +L Sbjct: 106 LVYITGRDITETIESNRKISQLATELKDANDKLFEQASTDSLTKLKNRRAFNEALNHLVH 165 Query: 124 -SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 S +K LS++ D D+FK ND FGH GDK++ L+D L + R GGEEF Sbjct: 166 FSQKQKSPLSLLMIDADHFKDYNDTFGHLEGDKILIILADLLTKALRKGDVLARYGGEEF 225 Query: 181 AAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIA--------ERCHK 230 A +SE E ++ L + + N + I IT+S G A + + Sbjct: 226 IVALPLTSEDETIDISERLLQTVREFNWEKRI-------ITVSVGAATYDFNSNSKNINL 278 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259 E +I +AD+ALY +K +GRNR+ FS Sbjct: 279 EYSINLIEQADKALYCSKVNGRNRITHFS 307 >gi|134298775|ref|YP_001112271.1| metal dependent phosphohydrolase [Desulfotomaculum reducens MI-1] gi|134051475|gb|ABO49446.1| metal dependent phosphohydrolase [Desulfotomaculum reducens MI-1] Length = 561 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 11/200 (5%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------I 119 NL I+ + + ++ G I + N + L+ D LS + NH F I Sbjct: 147 RNLESDIVFTGVMFICAWLIGGIAGIERDTRNILVNLANKDGLSEIYNHRYFHVTFKKAI 206 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 S N LS++ DIDYFK ND FGH GD ++ + L P R GG+E Sbjct: 207 EEAKSSNSPLSLLIMDIDYFKYYNDAFGHLAGDNILKDIGQILKQKVEYPGIAARYGGDE 266 Query: 180 FAAAALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERC-HKEPIST 235 F G A I+A L+ I+ P+ +I+ G+A H + Sbjct: 267 FCVLLPGYDSNVAIIIAQKLKDSIDQYFADNEQFKQLPTGKFSITLGLASYPEHTQKGDD 326 Query: 236 IIYRADQALYVAKKSGRNRV 255 ++ ADQALY AKK+ +N+V Sbjct: 327 LLELADQALYKAKKTSKNKV 346 >gi|88797497|ref|ZP_01113086.1| response regulator/sensory box protein/GGDEF domain protein [Reinekea sp. MED297] gi|88779669|gb|EAR10855.1| response regulator/sensory box protein/GGDEF domain protein [Reinekea sp. MED297] Length = 295 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 10/174 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141 ++ ELF + + S D +GL N + L Y+ +I D+D+FK+ Sbjct: 120 LMNELFTMQDSFEEASIRDYATGLYNRRYAMERLEQMYLHAKRYHNPFTIALVDVDHFKR 179 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FG+ GD VI L+ LV R GEEF + QEA + + LR+ Sbjct: 180 INDTFGYAFGDNVIEQLAGVLVRSLRETDICARYAGEEFMVLMPETETQEAILSLDRLRQ 239 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + P +T+S+G+ + + +++ ADQ L AKK+GRN+V Sbjct: 240 QVSELKWTNMQRP---VTVSSGVISWQPNKSVEQLMFLADQRLSTAKKAGRNQV 290 >gi|332139605|ref|YP_004425343.1| response regulator/GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327549627|gb|AEA96345.1| response regulator/GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 426 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 7/170 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFG 147 E S I +++ D L+GL N F + ++KL ++ D+D+FK IND G Sbjct: 246 EYIESVEEIRRVANTDYLTGLPNRRHFFYMVTVQHQKLLENHALALIDLDFFKSINDTHG 305 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V+ ++ L+ + + R GGEEF + + A D RK++E Sbjct: 306 HDAGDIVLKAIA-ALIEFYFPDEIISRFGGEEFCIYMPSITLENACKRLEDFRKVVEAEV 364 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + I +T S G++ H + + ++ AD+ LY AK GRN+V C Sbjct: 365 IQLPK-TDIKVTCSIGVSG-THTQRVDKLLSLADKQLYAAKHDGRNQVKC 412 >gi|218558327|ref|YP_002391240.1| diguanylate cyclase, GG[D/E]EF domain signalling protein [Escherichia coli S88] gi|218365096|emb|CAR02803.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein [Escherichia coli S88] gi|307553402|gb|ADN46177.1| putative diguanylate cyclase [Escherichia coli ABU 83972] gi|323949056|gb|EGB44948.1| GGDEF domain-containing protein [Escherichia coli H252] gi|323956902|gb|EGB52634.1| GGDEF domain-containing protein [Escherichia coli H263] Length = 410 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++ISS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISSLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|148358623|ref|YP_001249830.1| GGDEF domain-containing sensory box protein [Legionella pneumophila str. Corby] gi|148280396|gb|ABQ54484.1| sensory box/GGDEF family protein [Legionella pneumophila str. Corby] Length = 835 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 22/189 (11%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDID 137 I G+ + +L + N + L+R D L+ + N F L EK L+++ D+D Sbjct: 390 IYGTDITQLKNTQNAMLNLTRRDTLTQIANRQYFEEKLIEKIYEHHLKEKSLALLLIDLD 449 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK +ND GHP+GDK++ +++++ F+ RLGG+EF + A +A Sbjct: 450 NFKIVNDTLGHPIGDKLLMAVTNRMTRCLRANDFIARLGGDEFIVLLDQCNTDTAVKVAE 509 Query: 198 DLRKIIENSQINISSGP----SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250 + IN+ P H+TI+A I + E S ++ AD A+Y +KK+ Sbjct: 510 KI--------INVLDKPFQFDEYHMTITASIGIAIYPETSEIASDLLKYADIAMYQSKKT 561 Query: 251 GRNRVVCFS 259 G+N+ FS Sbjct: 562 GKNKCTVFS 570 >gi|302344595|ref|YP_003809124.1| diguanylate cyclase with PAS/PAC sensor [Desulfarculus baarsii DSM 2075] gi|301641208|gb|ADK86530.1| diguanylate cyclase with PAS/PAC sensor [Desulfarculus baarsii DSM 2075] Length = 831 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 15/167 (8%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GL N F +++ + + L+++ D+D FKQ ND FGH GDK + Sbjct: 656 LSVTDELTGLYNKRFFHATVDREMEIARRFGQPLALLMLDLDRFKQYNDTFGHLEGDKAL 715 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-- 213 A + + V R GGEEFA + EA ++A +R +E + + Sbjct: 716 AQFAGVVRGVVRAADLPCRYGGEEFAVLLPRTERAEAMVVAERIRAAVEAMDLWPVAADG 775 Query: 214 --PSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 +T+S G+A C K ++ +I ADQALY AK++GRNRV+ Sbjct: 776 QRQKRRVTVSIGVA--CLKGDLNQDRLINLADQALYAAKQAGRNRVI 820 >gi|294626235|ref|ZP_06704840.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666834|ref|ZP_06732067.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599500|gb|EFF43632.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603418|gb|EFF46836.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 317 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 19/180 (10%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-----------ISSLGSYNEKLSIVFFDIDYFKQI 142 F +Y + ++ D L+GL N F S L IV DID+FK++ Sbjct: 126 FQNYRSLLDDAQRDALTGLRNRKTFDDVILRLFAGGADSAAEPGVWLGIV--DIDHFKRV 183 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH GD+V+ ++ + F + R GGEEF G A L R Sbjct: 184 NDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVCLFERFRLA 243 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + P + +T+S GI E H IS ++ AD+ALY AK++GRNR ++++ Sbjct: 244 VAEHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAEL 298 >gi|262402458|ref|ZP_06079019.1| GGDEF family protein [Vibrio sp. RC586] gi|262351240|gb|EEZ00373.1| GGDEF family protein [Vibrio sp. RC586] Length = 438 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 12/161 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L + S++F DIDYFK++ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNQFSVLFIDIDYFKKVNDIYGHSLGDDL 331 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + L + R GGEEF +S ++A LA+ LR +E+ + I G Sbjct: 332 LREFALVLNREIRESDKLVRWGGEEFVVFCAQTSLEQAVELADRLRARVEDHRW-IHGGD 390 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S GIA+ E ++ + RAD+ALY AK+ GRNR+ Sbjct: 391 ---LTCSIGIAQ-MGDERVTETVSRADEALYRAKRLGRNRI 427 >gi|119486748|ref|ZP_01620723.1| regulatory component of sensory transduction system [Lyngbya sp. PCC 8106] gi|119456041|gb|EAW37174.1| regulatory component of sensory transduction system [Lyngbya sp. PCC 8106] Length = 456 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + D L+ + N AF L ++ L+++ DIDYFK+ ND++GH GD+ Sbjct: 287 QQAITDNLTKISNRRAFDVYLKQEWKRAKREALSLALMMIDIDYFKRYNDHYGHEAGDRC 346 Query: 155 IAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ + P FV R GGEEFA + + A +A+ ++K I + ++ + Sbjct: 347 LYTVAQTIRQAVKRPSDFVARYGGEEFAVILPNTEREGAETVADSIQKAIHDFKLPHAQS 406 Query: 214 P-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 P S IT+S GI+ + E + +I AD ALY AK GR+R+ + Sbjct: 407 PISSCITLSIGISIQIPTSEDFTILIQTADHALYEAKHQGRDRIQVY 453 >gi|187925942|ref|YP_001897584.1| response regulator receiver modulated diguanylate cyclase [Burkholderia phytofirmans PsJN] gi|187717136|gb|ACD18360.1| response regulator receiver modulated diguanylate cyclase [Burkholderia phytofirmans PsJN] Length = 362 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 10/176 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFF--DIDYFKQIN 143 ++L + + +L+ D L+GL N L S EK + F D+D FK N Sbjct: 184 QQLLATNLELQRLTHSDGLTGLSNRRYLDQYLAAEWRRSTREKTGLGFLMIDVDNFKAYN 243 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD+V+ ++ + G P R GGEEFA G+S +LA +R Sbjct: 244 DTYGHVAGDEVLKTVAHTVESCLGRPADLAARFGGEEFAVVVPGTSSGGLRLLAEKIRIA 303 Query: 203 IENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVV 256 IE I S + +TIS G A EP++ +I AD LY AK+ G+N+V Sbjct: 304 IEGLAIPHSGSATGIVTISIGAATLVPTVAEPVTKLIEAADVGLYRAKRDGKNQVA 359 >gi|323498467|ref|ZP_08103461.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] gi|323316479|gb|EGA69496.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] Length = 387 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 11/175 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 K+L + ++ +LS D L+ L N I L Y E L + D DYFKQ+N Sbjct: 193 KQLSQANKQLEELSLTDSLTRLPNRRCAIRKLKVYWQEAIQNQEPLVCIMIDADYFKQVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+++ L+ L F + V RLGG+EF + + A +A R+ + Sbjct: 253 DTAGHDAGDRLLIELAQTLQHSFRSDDLVCRLGGDEFFVICPNTDLEGGAHIAELTRQKV 312 Query: 204 ENSQINISSGPSI-HITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 +Q+ + G S+ +IS G+ ER + + +I AD A+Y AK SGRN+V Sbjct: 313 --NQMLVPVGESVWRGSISIGVGERSDEMVDYNDLIKVADNAVYQAKSSGRNQVA 365 >gi|320157878|ref|YP_004190256.1| hypothetical protein VVM_00100 [Vibrio vulnificus MO6-24/O] gi|319933190|gb|ADV88053.1| hypothetical protein VVMO6_03031 [Vibrio vulnificus MO6-24/O] Length = 581 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 7/160 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 QL D ++ L N ++ +++ E L + +ID F++IND+FGHPVGD VI + Sbjct: 413 QLRHQDPMTQLENKASLANTVQRELGKEDLYLAMINIDNFQRINDSFGHPVGDMVIRKTA 472 Query: 160 DQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + F P + + R G EEFA S+ EA N+L+ I N+++ + +G + Sbjct: 473 QMIRDAFPKPNGLCLARYGSEEFAVLFQSSAPHEAQTQLNELKHAISNTRL-LEAGLPVG 531 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +IS G+ + I A++AL AK G+NRVV Sbjct: 532 YSISVGLTQLA--PSYHETIENAERALQRAKNLGKNRVVT 569 >gi|308185518|ref|YP_003929650.1| inner membrane protein yfin [Pantoea vagans C9-1] gi|308055798|gb|ADO07968.1| Inner membrane protein yfiN [Pantoea vagans C9-1] Length = 527 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 7/153 (4%) Query: 107 DCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+GL N F +++ + ++ DID+FK+IND +GH GD V+ L+ L Sbjct: 365 DPLTGLCNRRGFSALAAQADSEHEQCVIAIDIDHFKKINDWYGHDAGDAVLVSLAALLRQ 424 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 T V R GGEEF ++ +AA A +R+ + + + +TISAG+ Sbjct: 425 ACRTGDIVSRFGGEEFILLLPDTTLADAARTAERIRETVCATTFPFAG----TMTISAGV 480 Query: 225 AERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 A R + ++ RAD+ALY AK +GRN V+ Sbjct: 481 ASRDDQSRDRDALLRRADEALYEAKAAGRNTVI 513 >gi|238758551|ref|ZP_04619727.1| Predicted diguanylate cyclase [Yersinia aldovae ATCC 35236] gi|238703251|gb|EEP95792.1| Predicted diguanylate cyclase [Yersinia aldovae ATCC 35236] Length = 366 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 22/247 (8%) Query: 29 IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI-ISITISL-LLGY-- 84 + S+F FI+T+ N F + P L I +++ + I TI L L+G+ Sbjct: 108 LLLSLFMIFFISTIALSDNFLAFCLHTAP-SALTVIFLDDFQNIFRILFTIMLPLIGFSL 166 Query: 85 ----------ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---- 130 + ++ L+ + S LS ID L+ L N + L + + Sbjct: 167 HHLMLRRSDDFTRKLVARLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLSQSPGNHY 226 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ DID+FK NDN+GH +GD+ + ++ + + V R GGEEF SE+ Sbjct: 227 VLLLDIDHFKAYNDNYGHTMGDQALVRVASAIRDAVRSRDIVVRYGGEEFLVLLTHVSEE 286 Query: 191 EAAILANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 A+ LA +R+ + + I + S +T+SAGI+ + +++ + AD+ALY AK Sbjct: 287 YASQLAERVRQRVLSLDIPHVFNHKVSTTVTLSAGISPLLAYD-LASSLKAADEALYRAK 345 Query: 249 KSGRNRV 255 K GRN+V Sbjct: 346 KDGRNKV 352 >gi|238764620|ref|ZP_04625566.1| hypothetical protein ykris0001_24790 [Yersinia kristensenii ATCC 33638] gi|238697210|gb|EEP89981.1| hypothetical protein ykris0001_24790 [Yersinia kristensenii ATCC 33638] Length = 277 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 78/153 (50%), Gaps = 9/153 (5%) Query: 107 DCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D ++GL N ++L + S++ DID+FK IND++GH VGD+VI L+ Q+ Sbjct: 127 DPMTGLYNRRGLATTLEPIAQLGQHFSVIALDIDHFKSINDSYGHDVGDEVIKQLAIQIR 186 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISA 222 + R GGEEF G+ A +AN LR +E I P I ITIS Sbjct: 187 DSSRDSDILCRSGGEEFLMLLPGTVPDVAIQVANRLRHNVEMMVI-----PGIQPITISL 241 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G+A + RAD+ALY AK+ GRN V Sbjct: 242 GVAFWNGVGAPEDALKRADEALYRAKQQGRNWV 274 >gi|120596930|ref|YP_961504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. W3-18-1] gi|120557023|gb|ABM22950.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. W3-18-1] Length = 1216 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 10/182 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 + E +S RI L+ D L+ L N + SSL + +++++F D+D+FK I Sbjct: 777 ISERKMSEERIHFLAHHDSLTLLPNRLSLQSSLEIVFGEALASQSQIAVMFIDMDHFKNI 836 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH VGD+++ ++ +L + V RLGG+EF ++ E A LA LR Sbjct: 837 NDTLGHHVGDQLLLEVARRLKNIVDNNDIVARLGGDEFVVVLSDTNHDEVASLAEALRSG 896 Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + SQ I S+H + S GI+ + ++ AD A+Y AK +GRN F+ Sbjct: 897 L--SQTYIIDNNSLHSSPSIGISLFPTDGNTVEALMKNADMAMYRAKAAGRNNYQFFTAA 954 Query: 262 EN 263 N Sbjct: 955 MN 956 >gi|121728244|ref|ZP_01681277.1| GGDEF family protein [Vibrio cholerae V52] gi|147674355|ref|YP_001216756.1| GGDEF family protein [Vibrio cholerae O395] gi|262169491|ref|ZP_06037183.1| GGDEF family protein [Vibrio cholerae RC27] gi|121629495|gb|EAX61921.1| GGDEF family protein [Vibrio cholerae V52] gi|146316238|gb|ABQ20777.1| GGDEF family protein [Vibrio cholerae O395] gi|227013102|gb|ACP09312.1| GGDEF family protein [Vibrio cholerae O395] gi|262022304|gb|EEY41013.1| GGDEF family protein [Vibrio cholerae RC27] Length = 443 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L +S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203 + SD+LV R GGEEF ++ ++A LA LR KI Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S I+ + IT S GIA+ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 382 DHSWIHGGA-----ITCSLGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427 >gi|332993845|gb|AEF03900.1| GGDEF domain-containing protein [Alteromonas sp. SN2] Length = 369 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 20/249 (8%) Query: 22 FSPHTFMIYFSIFFSIFIATVIFIANIF-LFYIGLTPFYGLEYILVENLSLVIISITISL 80 F+ + ++F+ F +A F A I +F+ EY +V IT+S Sbjct: 114 FTVPSVTMFFTGFRRGLMALTGFAAVIIVIFFTPDNALLATEYSFEFKTRIVYTFITVSF 173 Query: 81 LLGYISGSILKELFISYN-------RISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126 L S + SYN + + +R D L+ +LN +S + Sbjct: 174 LSAVYEYSRQR----SYNTAVYLSEQFERQARYDPLTTILNRRGGQQQLEQELSRMQRNK 229 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + SI DID FK IND FGH GD+V+ ++ + R GGEEF Sbjct: 230 KPFSIALADIDRFKSINDTFGHDAGDEVLKKVASVFSSRLRAQDGLSRWGGEEFLFIFPE 289 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 ++EQ+A ++ +R+ + + I + + S +T S G+ E ++T + ADQALY Sbjct: 290 TNEQDARMVTEQIRENLSANAIPVDN-KSHRVTSSFGVCEITPSMTLTTALNLADQALYQ 348 Query: 247 AKKSGRNRV 255 AK GRN+V Sbjct: 349 AKNDGRNKV 357 >gi|301029766|ref|ZP_07192819.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1] gi|299877373|gb|EFI85584.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1] Length = 476 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 429 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 465 >gi|297578815|ref|ZP_06940743.1| GGDEF family protein [Vibrio cholerae RC385] gi|297536409|gb|EFH75242.1| GGDEF family protein [Vibrio cholerae RC385] Length = 372 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++L+ ++ LS D L+GL N + L + V DID FK +N Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH VGDKV+ +++ L F + V RLGG+EF ++ +A + + I Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I++ + ++S G+A + H E ++ ADQA+Y+AK SG+NRV F Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368 >gi|253689988|ref|YP_003019178.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756566|gb|ACT14642.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 526 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 80/163 (49%), Gaps = 10/163 (6%) Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D ++ LLN S L + + +++ DID FK+IND +GH +GD VI +LS + Sbjct: 368 DPMTDLLNRRGLDSVLRYWQMGQKSFAVIALDIDRFKRINDTYGHDIGDNVIRYLSQLIR 427 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + R GGEEF +S A +A LR +E S I + +ITIS G Sbjct: 428 TSSRDSDILCRSGGEEFLILLPETSLDVALSIAERLRLRMEESTIPVVG----NITISLG 483 Query: 224 IA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +A + I AD+ALY AK+ GRNRVV S E Sbjct: 484 VALWEPGANDTSIERTFKLADEALYQAKQEGRNRVVSASGNEQ 526 >gi|190576436|ref|YP_001974281.1| putative transmembrane GGDEF signaling protein [Stenotrophomonas maltophilia K279a] gi|190014358|emb|CAQ48005.1| putative transmembrane GGDEF signaling protein [Stenotrophomonas maltophilia K279a] Length = 412 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 76/169 (44%), Gaps = 21/169 (12%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL AF +L SI D+D+FK ND GH GD V+ ++ +L V Sbjct: 231 DELTGLPGRRAFNETLQRARGTYSIAMVDVDHFKSFNDTHGHDTGDDVLRLVASRLDRV- 289 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------------ 214 G R GGEEFA L LR+ IE++++ + Sbjct: 290 GDGGRAFRYGGEEFAVVFLDRPAAACVDAVEALRQTIEDTRMQLRDRSTRSRDDETGRRQ 349 Query: 215 --------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ +T+S G+A+ E + +I ADQALY AK GRN+V Sbjct: 350 RGRGGSGQTVQVTVSIGLADSRVDERPAAVIKAADQALYAAKDGGRNQV 398 >gi|28867570|ref|NP_790189.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28850805|gb|AAO53884.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 677 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N +++ L +K S++ D+D+FK+IND +GH GDKV Sbjct: 515 QKALIDPLTGLPNRASWGERLEQEMADWQRDKNSLLVCILDLDHFKRINDGYGHLAGDKV 574 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ F+ R GGEEF + L ++LR +E + G Sbjct: 575 LKIVANVFKKRLRPADFLARFGGEEFVMLLPATLLGAGLTLLDELRTAVELCPFHFK-GE 633 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNRV Sbjct: 634 RVTITVSIGVTALRTGERSDTAIKRADQALYKAKENGRNRV 674 >gi|330952850|gb|EGH53110.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7] Length = 298 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 11/171 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFKQI 142 S++ + + +R +LS D L+ N A + SL + EK S+ F D+D+FK I Sbjct: 102 SLIMQTMAARDRYQELSETDTLTHAPNRRALVDSLNTALASAEKSSLWFAMLDLDHFKSI 161 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH VGD V+ + +L G F GRLGGEEF ++ +A +L + Sbjct: 162 NDTHGHEVGDNVLISFATRLKDTKGRIAF-GRLGGEEFGVILSAANATDAVHALEELLML 220 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + + + S G+A E + ++ AD+ LY AK+SGR Sbjct: 221 TQKDET-----AQVPYSFSGGVASLSRVETFNDLLKEADENLYHAKRSGRK 266 >gi|229916012|ref|YP_002884658.1| diguanylate cyclase [Exiguobacterium sp. AT1b] gi|229467441|gb|ACQ69213.1| diguanylate cyclase [Exiguobacterium sp. AT1b] Length = 347 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 12/194 (6%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISS 121 LS V++ +S + + EL S R+ L+ D L+GLLN S I Sbjct: 156 LSTVVMIAGLSFIFESAVVEVTDELERSNERLQILASTDGLTGLLNRKVGHEHVSKAIDK 215 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +IV DID FK N+ +GH GD+V+ ++ L + G + R GGEEF Sbjct: 216 AAHEGVPYAIVLGDIDRFKSFNETYGHDCGDRVLQQVASILSDIDGMAV---RWGGEEFL 272 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 L S + + LR+ IE++ ++ + G +H+T++ G+A R + + I+ AD Sbjct: 273 VY-LSSPSGDFLPIVEQLRQQIESTPLHYA-GERLHVTMTFGLAVRVGHDTVEEIVKEAD 330 Query: 242 QALYVAKKSGRNRV 255 L K+SG+N+V Sbjct: 331 NFLREGKRSGKNQV 344 >gi|291288402|ref|YP_003505218.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] gi|290885562|gb|ADD69262.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] Length = 516 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 22/215 (10%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNR-----------ISQLSRIDCLSGLLN 114 VE + ++ +S+ L LKEL ++ NR I +LS ID L+ + N Sbjct: 302 VERFKKIELNNDLSVRLSETGSFELKELAVAANRAMDKIENLNKEIVKLSNIDALTQIYN 361 Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 F S N ++I+ DIDYFK ND GH GD + ++ + Sbjct: 362 RKFFDEQYIKQYKSSARNNSSIAILMIDIDYFKSYNDAHGHVEGDACLKEVASIIKNSIS 421 Query: 168 TPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIA 225 P + R GGEEF + A +A +RK I +S+ + +S S +ITIS G+A Sbjct: 422 RPDDIAARYGGEEFIIMLPFTHADGAIHIAETIRKNIADSKKPHGASQVSEYITISIGVA 481 Query: 226 ERCHKEPISTI--IYRADQALYVAKKSGRNRVVCF 258 ++ S+I I +AD+ALY AK+ GRNRV F Sbjct: 482 IEVPEDSSSSINLISKADKALYQAKRYGRNRVETF 516 >gi|158333756|ref|YP_001514928.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158303997|gb|ABW25614.1| diguanylate cyclase (GGDEF domain), putative [Acaryochloris marina MBIC11017] Length = 370 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 13/180 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFK 140 S+ ++L ++ ++ +L ID L+ + N F + L N LS++ D+D+FK Sbjct: 144 SLSEQLELANQQLEELVTIDSLTQVNNRRCFDETFLSEWNRLCRENHPLSLIMCDVDHFK 203 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LAND 198 ND +GH GD + ++ + V P V R GGEEF A L +++ + AI +A Sbjct: 204 AFNDTYGHQAGDVCLRQVAQAIAKVAKRPADCVARYGGEEF-AIILPNTDLDGAIQVAEA 262 Query: 199 LRKIIENSQI-NISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255 +R I+ I + S ++T S G+A + E + S +I AD+ALYVAK+ GR+RV Sbjct: 263 IRSTIQELAIPHQHSSTGNNVTASLGVASQVPDENVAPSILIEAADRALYVAKQQGRDRV 322 >gi|124515412|gb|EAY56922.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptospirillum rubarum] Length = 703 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 15/173 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIV---FFDIDYFKQINDNFGHPV 150 RI+ + D L+ L N F L G + S+V + D+DYFK IND GHP Sbjct: 259 QRIAYQANFDSLTDLPNRHLFQDRLSRAVGQAHRTGSLVALLYLDVDYFKNINDRMGHPY 318 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQIN 209 GD+V+ L +L V + R+GG+EFA ++ EA +L L +IE + Sbjct: 319 GDRVLVELGKRLKTVVRETDTIARIGGDEFAVILCDLHDRSEAMVLGRRL--MIEAAMPF 376 Query: 210 ISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259 G +T+S G+A + E +T+I AD ALY K+ GRN + FS Sbjct: 377 RIDGSRADLTVSIGVA--LYPEDGTDATTLIRNADIALYQVKREGRNNIAFFS 427 >gi|88705283|ref|ZP_01102994.1| GGDEF domain protein [Congregibacter litoralis KT71] gi|88700373|gb|EAQ97481.1| GGDEF domain protein [Congregibacter litoralis KT71] Length = 365 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 24/181 (13%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + ++ LS D L+G LN F ++ LS++ D+D+FK N Sbjct: 181 RELEVVNQQLLSLSITDPLTGALNRRGFNDRLKAELAGAARTGTPLSVLMLDVDHFKHYN 240 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGHP GD + S+ L V R GGEEFA + + A I+A +R+ + Sbjct: 241 DAFGHPAGDVALRKTSEALRACCRDNDSVSRYGGEEFALILPATDAEGAGIMAERVRQAV 300 Query: 204 E-----NSQINIS----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +I +S S P+ +T A +A +T++ AD ALY AK+ GR+R Sbjct: 301 AKLEGLKQEITVSVGAASAPAAVLTDLAMVA--------TTLVAFADSALYRAKEGGRDR 352 Query: 255 V 255 Sbjct: 353 A 353 >gi|94313070|ref|YP_586279.1| putative diguanylate cyclase [Cupriavidus metallidurans CH34] gi|93356922|gb|ABF11010.1| putative diguanylate cyclase, GGDEF domain protein [Cupriavidus metallidurans CH34] Length = 409 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 15/174 (8%) Query: 104 SRIDCLSGLLNHSAF----ISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GLLN A IS + + E LS + D+DYFK +ND GH GD V+ Sbjct: 223 ARTDALTGLLNRGALDMLAISMIARWQRNGEALSCLVIDVDYFKLVNDTHGHHAGDNVLR 282 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L R GGEEF + E +A LAN + + + ++ + G Sbjct: 283 EIATALDNSRRASDIAARYGGEEFCILCPHTDEHQATALANRILRKVRAIELPGAGG--- 339 Query: 217 HITISAGIAERCHKEPISTIIYR-----ADQALYVAKKSGRNRVVCFSDIENNT 265 H ++S G+AE ++R AD+ALY AK+ GR++ + S + T Sbjct: 340 HASVSIGVAELRGGPSSREGLWRSLFATADRALYQAKQRGRDQFMLASSMIEET 393 >gi|288941878|ref|YP_003444118.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288897250|gb|ADC63086.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 303 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 18/178 (10%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145 L + +R+ Q++ D L+ + N F L ++ LS++ DID FK ND+ Sbjct: 126 LKLRTDRLEQVAMQDGLTQIPNRRRFDQKLREEWARLIRPDQSLSLLMIDIDQFKPYNDH 185 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+ + ++ L V P V R GGEEFA + E A LA R+++E Sbjct: 186 YGHGAGDECLRQVAQALYQVPQRPADLVARYGGEEFAVVLPETDETGAEHLA---RRLLE 242 Query: 205 NSQI----NISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRV 255 + Q + S + +++S G+A + P S + AD+ALY AK GRNRV Sbjct: 243 SVQALGIEHDYSDVAPQVSVSIGVATHSPRRPRSDAEALKQSADRALYQAKSQGRNRV 300 >gi|307153753|ref|YP_003889137.1| PAS/PAC and GAF sensors-containing diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306983981|gb|ADN15862.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC 7822] Length = 1121 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 81/169 (47%), Gaps = 20/169 (11%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL + ++ D+D+FKQ NDNFGH GD ++ + Sbjct: 958 DSLTGLYNRRYMEESLKREINLAQRKQHPVGLIMIDVDHFKQFNDNFGHKAGDLILHEVG 1017 Query: 160 DQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + L+ + R GGEEF A+L S+Q A +RK I+ Q+N S Sbjct: 1018 NFLMANVRSGDIACRYGGEEFLLILPEASLSDSQQR----AEQIRKGIK--QLNFQQYNS 1071 Query: 216 IHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +++ I C H + T+I AD ALY AK GR+RVV FS + Sbjct: 1072 AFTSLTVSIGVACFPAHGKQGETLIQSADMALYQAKNQGRDRVVVFSSV 1120 >gi|52842848|ref|YP_096647.1| sensory box/GGDEF family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629959|gb|AAU28700.1| sensory box/GGDEF family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 835 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 22/189 (11%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDID 137 I G+ + +L + N + L+R D L+ + N F L EK L+++ D+D Sbjct: 390 IYGTDITQLKNTQNAMLNLTRRDTLTQIANRQYFEEKLIEKIYEHHLKEKSLALLLIDLD 449 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK +ND GHP GDK++ +++++ F+ RLGG+EF + A +A Sbjct: 450 NFKIVNDTLGHPTGDKLLMAVTNRMTRCLRANDFIARLGGDEFIVLLDQCNTDTAVKVAE 509 Query: 198 DLRKIIENSQINISSGP----SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250 + IN+ P H+TI+A I + E S ++ AD A+Y++KK+ Sbjct: 510 KI--------INVLGKPFQFDEYHMTITASIGIAIYPETSEIASDLLKYADIAMYLSKKT 561 Query: 251 GRNRVVCFS 259 G+N+ FS Sbjct: 562 GKNKCTVFS 570 >gi|78484742|ref|YP_390667.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78363028|gb|ABB40993.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2] Length = 555 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 22/209 (10%) Query: 66 VENLSLVIISITISLLLG-----YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 ++N++ ++I I + L+G + S K+L R L+ D L+GL N A Sbjct: 354 LQNMASLLIGIIV--LMGGIAFLFASNRHQKQLLQQKARY--LAYHDSLTGLYNRYALTQ 409 Query: 121 SLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 + G +N + S+ F D+D FK IND +GH VGD+V+ ++ +L V Sbjct: 410 TEGQHNLLANKSDNDSYSVFFLDLDGFKPINDTYGHQVGDQVLQTIASRLKNTVRKEDIV 469 Query: 173 GRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK- 230 R+GG+EFA + ++ A I + L K IE I + ++H+ S G+A Sbjct: 470 VRVGGDEFAIITYHTVDRVAIQIFGDRLIKAIEKP-IQLDD-KTLHLGTSIGVASYPQNG 527 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + ++ +I AD A+Y AKKSG+ + +CF+ Sbjct: 528 DTLNQLIDLADAAMYKAKKSGKGK-LCFA 555 >gi|325920561|ref|ZP_08182483.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] gi|325548954|gb|EGD19886.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] Length = 982 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 10/172 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 +EL ++ ++ + D L+GLLN + + +L + L++V D+D+FK +N Sbjct: 801 RELEVARAELALKATHDELTGLLNRAGILHALRGMLARATVQAQPLAVVLIDLDHFKLVN 860 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD V+A + +L + +GR GGEE A G + L R I Sbjct: 861 DQHGHLAGDAVLAEVGRRLDTLVRGDDRIGRYGGEELLALLPGLNADSTHRLQALHRGIC 920 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I+ G + +T S G+A E + ++ RAD ALY AK+SGRNR+ Sbjct: 921 GDYPID---GSVLAVTCSIGVAWFQPGETLEQLLARADAALYRAKRSGRNRI 969 >gi|291288707|ref|YP_003505523.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] gi|290885867|gb|ADD69567.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] Length = 275 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 11/165 (6%) Query: 102 QLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++SR D L+ + N + F+ + S S + FDID FK IND +GH GD Sbjct: 93 KISRYDYLTRIYNRRSLIELLEMEFLRNRRSSEGHFSFILFDIDDFKNINDIYGHGQGDT 152 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + L GR GG+EFA ++ A +A +++ I + + + +S Sbjct: 153 VLKGVGKTLASSVRKSDITGRFGGDEFAVILPYTTLDNAVTVAEKIKEKITSLRFSKNSK 212 Query: 214 PSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255 SI IT+S G+ E + I T +I AD+ LY AKK G+N + Sbjct: 213 ESIGITLSMGVIEVDSESKIDTFEKVIAEADKFLYCAKKRGKNTI 257 >gi|218458349|ref|ZP_03498440.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5] Length = 267 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 23/176 (13%) Query: 98 NRISQLSRI-------DCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNF 146 R+ QL++ D LSGLLN +S L + S + D+D FK +ND + Sbjct: 37 RRLRQLAQAALYEAGHDSLSGLLNRQGLLSLLEELQDPASTPPRLYLVDLDGFKAVNDAW 96 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKII 203 GH VGD +I +S L + RLGG+EFA +G++ E E A+LA + Sbjct: 97 GHAVGDDLIRLVSKALTACHPEVVAAARLGGDEFALVHVGAATCDEMERAVLA------L 150 Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 NI G +I + S G A R EP+ ++ RAD ALY AK +GR + + + Sbjct: 151 FAEPFNI-DGRTIEVGASIGAAARDGDIEPLE-LLRRADMALYRAKANGRGQAIEY 204 >gi|146342000|ref|YP_001207048.1| signaling protein [Bradyrhizobium sp. ORS278] gi|146194806|emb|CAL78831.1| putative signaling protein containing multidomains (CHASE/GGDE/EAL) [Bradyrhizobium sp. ORS278] Length = 837 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 11/179 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNF 146 ++L ++ R+ +L++ D L+GL N + F+ + N+ + ++ D+D FK +ND+ Sbjct: 360 QQLALANRRVLELAQTDALTGLANRAFFLEEMERINDDKNGRFTVFLLDLDRFKNVNDSL 419 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKII- 203 GH GD+++ ++ +L + RLGG+EFA G +Q A LA + ++I Sbjct: 420 GHGAGDELLMQVAQRLRSQLRDEDVLARLGGDEFAVIQAGFDDQRTAAIELAQRITRLIA 479 Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 E QI G + I S GI+ H ++ +AD ALY +K +GR+ + D+ Sbjct: 480 EPFQI---GGQRVEIGTSIGISLAPQHGRDQEHLLKKADLALYRSKSAGRSCYTLYDDV 535 >gi|145297796|ref|YP_001140637.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850568|gb|ABO88889.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 331 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 5/154 (3%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 QL+ D L+GLLN +A E +I F D+D FKQ+NDN GH GD+++ L+ Sbjct: 153 QQLAHRDPLTGLLNRTALQRQFPQ--EFRAICFIDLDNFKQVNDNLGHRAGDELLIALTQ 210 Query: 161 QLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ + +GRLGG+EF S + LA +I ++ + +G + Sbjct: 211 RVKACCDEGVKLGRLGGDEFVLLLPWHSDDPRPHHLAQQCVNVI-STPFELPNG-EAEVG 268 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +S GIA+ ++ ST RADQA+Y K+SG+ Sbjct: 269 LSMGIAQIRPQDDFSTARARADQAMYRVKRSGKR 302 >gi|77918544|ref|YP_356359.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380] gi|77544627|gb|ABA88189.1| diguanylate cyclase with PAS/PAC sensor [Pelobacter carbinolicus DSM 2380] Length = 301 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 3/156 (1%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 +R++ L CL G L S + Y + + F DID+FK +ND +GH GD ++ Sbjct: 143 DRLTGLPNRACLEGELQRS--LDEYKRYGWPVGLFFMDIDHFKAVNDTYGHERGDDILRL 200 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++ L VGR GGEEF ++ +A R ++E S I + P ++ Sbjct: 201 VATTLAHNCRASDIVGRWGGEEFVGLVRNATTASLLQVAERSRMLVEQSFIMVDGRP-LN 259 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +T+S G A E + ++ RAD ++ +K GRN Sbjct: 260 VTLSVGAALVREGESAAGLVRRADHLMFESKHKGRN 295 >gi|59712168|ref|YP_204944.1| GGDEF domain-containing protein [Vibrio fischeri ES114] gi|59480269|gb|AAW86056.1| GGDEF domain protein [Vibrio fischeri ES114] Length = 443 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 95/176 (53%), Gaps = 21/176 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142 LKE + + ++L+ D L+G N +A L ++++ S+++ DID+FK++ Sbjct: 262 LKEKNVEF---AELAHRDSLTGARNRNAVRDWLERMSQQVRWGKQTFSVIYIDIDFFKKV 318 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFG---TPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND+ GH GD + L + ++V+ G + F+ R GGEEF + + Q+A A + Sbjct: 319 NDDLGHQTGDDI---LREFVLVITGAIKSTDFLVRWGGEEFIVFSPNNDLQQAEEKAELI 375 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R+ +E+ + +T S G+AE E I+ +I RAD AL+ AK +GRN V Sbjct: 376 RRTVEHHLWCHNE----RLTCSLGVAE-MKDERITEVIARADDALFKAKNAGRNNV 426 >gi|148547279|ref|YP_001267381.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148511337|gb|ABQ78197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida F1] Length = 699 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 89/181 (49%), Gaps = 14/181 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIND 144 E ++ +I ++ D L+GL N + F L GS N KL+ D+D FK IND Sbjct: 264 EELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSENAKLTAALCLDLDNFKNIND 323 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKII 203 + GH GDK++ L +L + RLGG+EFA G ++AA A L K I Sbjct: 324 SLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGLEGRDAACNTAQRLIKAI 383 Query: 204 ENS-QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 QI G + +S GIA + ++ AD ALY AK++GRNR CF D+ Sbjct: 384 SPPFQI---EGHQFVVGVSIGIAIAPDDNDQAEQLLGYADMALYQAKRNGRNRYECF-DV 439 Query: 262 E 262 E Sbjct: 440 E 440 >gi|119776735|ref|YP_929475.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119769235|gb|ABM01806.1| GGDEF domain-like protein [Shewanella amazonensis SB2B] Length = 641 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 81/175 (46%), Gaps = 17/175 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 ++ QLS D L+GLLN AF+ LS+ D+D+FK IND GH VG Sbjct: 446 KLQQLSDTDPLTGLLNRRAFLHQARQMQRLAERQQFPLSVALLDLDFFKAINDKHGHHVG 505 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ + +GR GGEEF L ++E++ I A L+++ Sbjct: 506 DAVLRAFAHGAKTTLRQTDIIGRFGGEEF---ILLATEKDPIIFAGLLQRVQRAFTHACQ 562 Query: 212 SGPSI--HITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P+I ++ SAGIA I I +AD+ LY AK +GR +V S Sbjct: 563 QDPAIGFSVSFSAGIAALEDNGATEIPDIEEAIRQADELLYRAKANGRQQVCTDS 617 >gi|315126261|ref|YP_004068264.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pseudoalteromonas sp. SM9913] gi|315014775|gb|ADT68113.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pseudoalteromonas sp. SM9913] Length = 575 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 20/178 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ ++ D L+GL + I L + +KL++ + D+D FK IND +GH GD V Sbjct: 142 KKLHDMAHYDSLTGLASRPILIDQLQQAITSEQKLAVAYLDLDNFKPINDKYGHETGDFV 201 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEF------AAAALGSSE---QEAAILANDLRKIIEN 205 + ++ +L + R+GG+EF AA + E QE I ND K+ E Sbjct: 202 LKTIAQRLKSTLRKEDTLARIGGDEFIFLLRGAAHTIQEYETLLQEVLIEVNDPIKLAEF 261 Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 S S+ I++S G+A I+ RADQ +Y AK+SG NR++ F E Sbjct: 262 S-------CSVQISVSIGVALPSDDGLTCDDILRRADQTMYQAKRSGTNRILFFDPEE 312 >gi|299535394|ref|ZP_07048716.1| inner membrane protein [Lysinibacillus fusiformis ZC1] gi|298729155|gb|EFI69708.1| inner membrane protein [Lysinibacillus fusiformis ZC1] Length = 505 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 109/217 (50%), Gaps = 11/217 (5%) Query: 52 YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111 Y+ F +E L +N I ++I+LL +I ++ ++ ++ L+ D L+G Sbjct: 285 YVKFINFTKME-ALQKNTKQFWILLSIALLTSFIMLLVINKIL---SKTIHLATFDPLTG 340 Query: 112 LLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 + N + +I + S K ++ D+D FKQ+ND FGH GD ++ + L V Sbjct: 341 VYNRATYIRKIDSLLRKRKMNVPGLLLIDLDNFKQVNDQFGHVEGDHILIETAKILKHVV 400 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIA 225 FV R GG+EFA ++E++ +A D+ I + + + + + ++S G A Sbjct: 401 KQSGFVVRFGGDEFAIVLYDTTEEQMQHMAEDILTQIRSVRYDGQASEKWSVLSVSMGGA 460 Query: 226 ERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDI 261 H E ++ RAD+ALY +K +G+++ ++++ Sbjct: 461 IYNHAEDTEMSLFERADKALYQSKNAGKDQYSSYAEV 497 >gi|226939478|ref|YP_002794551.1| hypothetical protein LHK_00549 [Laribacter hongkongensis HLHK9] gi|226714404|gb|ACO73542.1| GGDEF domain protein [Laribacter hongkongensis HLHK9] Length = 601 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 8/161 (4%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G LN S + L++ DID FKQ+ND +GH GD + ++ Sbjct: 440 DQLTGALNRRGLDEQFMREASRAERSGQPLALALIDIDNFKQLNDRYGHRTGDNALRYVV 499 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D + V R GGEEF +S+++A L L++ + + +++ + IT Sbjct: 500 DLVSERVRPSDAVARFGGEEFVVLMPDTSQEQALELIERLQRDLTKT-FFLANEDRLVIT 558 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 SAGIA E +I RAD A+Y AK +G+NRV+ +D Sbjct: 559 FSAGIAVWSAGESELDLIERADHAMYRAKLAGKNRVLAATD 599 >gi|254975836|ref|ZP_05272308.1| putative signaling protein [Clostridium difficile QCD-66c26] gi|255314965|ref|ZP_05356548.1| putative signaling protein [Clostridium difficile QCD-76w55] gi|255517640|ref|ZP_05385316.1| putative signaling protein [Clostridium difficile QCD-97b34] gi|255650750|ref|ZP_05397652.1| putative signaling protein [Clostridium difficile QCD-37x79] Length = 391 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 110/245 (44%), Gaps = 30/245 (12%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFIS 96 F +VI FLF P G++ I S ++ + I+ L ++S + + +F Sbjct: 147 FGESVIVFGGCFLFLNLFLP--GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTY 204 Query: 97 YNRI---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFF 134 Y+++ Q I ++ LLN L N E ++ + Sbjct: 205 YDKLLISQQYEEISHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMI 264 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEA 192 DIDYFKQ NDN+GH GD + ++ ++++ F + R GGEEF E +A Sbjct: 265 DIDYFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCDETDA 323 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKS 250 + + LRKIIE+ P +T+S G+ + ++ I+ I D+ALY AK+ Sbjct: 324 KLKSECLRKIIESCNFERDDVPLKCVTVSIGVYTKKIEKAITLNEFISNCDKALYTAKEQ 383 Query: 251 GRNRV 255 GRN V Sbjct: 384 GRNCV 388 >gi|192359514|ref|YP_001981267.1| putative signal transduction protein [Cellvibrio japonicus Ueda107] gi|190685679|gb|ACE83357.1| putative signal transduction protein [Cellvibrio japonicus Ueda107] Length = 867 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 21/171 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L+ D L+GL N F +SL + + +V+ D+D+FK IND+FGH G Sbjct: 432 QLKYLAMHDSLTGLNNRHFFETSLKQLTADALRNHRQHGLVYIDLDHFKVINDSFGHQKG 491 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++ L P RLGG+EFA S+Q+A A D++++ S+ N Sbjct: 492 DEVLREVAHLLRRRIRRPDIFCRLGGDEFAVLLHDVSQQQAEEFARDIQQLA--SEFNFQ 549 Query: 212 S-------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G SI +T+ ER + + RAD ALYVAK GRN + Sbjct: 550 SQGQRINLGCSIGLTLINNSTERAEEH-----LMRADIALYVAKGRGRNLI 595 >gi|153826672|ref|ZP_01979339.1| GGDEF family protein [Vibrio cholerae MZO-2] gi|262191640|ref|ZP_06049818.1| GGDEF family protein [Vibrio cholerae CT 5369-93] gi|149739534|gb|EDM53762.1| GGDEF family protein [Vibrio cholerae MZO-2] gi|262032482|gb|EEY51042.1| GGDEF family protein [Vibrio cholerae CT 5369-93] Length = 443 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L +S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203 + SD+LV R GGEEF ++ ++A LA LR KI Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S I+ + IT S GIA+ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427 >gi|116051327|ref|YP_789841.1| hypothetical protein PA14_21190 [Pseudomonas aeruginosa UCBPP-PA14] gi|115586548|gb|ABJ12563.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 785 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 100/186 (53%), Gaps = 22/186 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 ++L +L ++ + Q++R D L+GL N +AF + + + L+++F D+D+FK Sbjct: 331 ALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGLAVMFLDLDHFK 390 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199 +IND+ GH GD+++ +S+++ V V R G+EF A + + EA IL+ L Sbjct: 391 RINDSLGHDSGDELLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQDHEAHILSQRLM 450 Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253 +K+ E ++ G ++ +T S G++ E+C + ++ A AL+ +K GRN Sbjct: 451 QKMKEPIALD---GRTLVMTASVGVSLYPNDGEQCEE-----LLKNAGLALHQSKACGRN 502 Query: 254 RVVCFS 259 FS Sbjct: 503 NAQFFS 508 >gi|21112594|gb|AAM40815.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574354|gb|AAY49764.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1050 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 8/174 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 +L L I + + + D L+GL N F +L L + DID+FK+ Sbjct: 875 LLTRLRIKSDAFERQAHEDALTGLPNRRHFDEALARDLSRARRSGRPLVLAILDIDHFKR 934 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND + H GD V+ + L RLGGEEFA ++ ++A L +R Sbjct: 935 INDQYSHASGDAVLHDVGVLLTAAARASDLPARLGGEEFALLLSDTTLEQAHALCLRIRA 994 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ + + +T SAG+AE +E S+++ RAD ALY AK +GR+R+ Sbjct: 995 QF-HARHDWGGVEGLQVTFSAGLAELGEEESGSSLMQRADHALYEAKSAGRDRI 1047 >gi|77747817|ref|NP_636891.2| hypothetical protein XCC1520 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|77761246|ref|YP_243784.2| hypothetical protein XC_2715 [Xanthomonas campestris pv. campestris str. 8004] Length = 1010 Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 8/174 (4%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 +L L I + + + D L+GL N F +L L + DID+FK+ Sbjct: 835 LLTRLRIKSDAFERQAHEDALTGLPNRRHFDEALARDLSRARRSGRPLVLAILDIDHFKR 894 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND + H GD V+ + L RLGGEEFA ++ ++A L +R Sbjct: 895 INDQYSHASGDAVLHDVGVLLTAAARASDLPARLGGEEFALLLSDTTLEQAHALCLRIRA 954 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ + + +T SAG+AE +E S+++ RAD ALY AK +GR+R+ Sbjct: 955 QF-HARHDWGGVEGLQVTFSAGLAELGEEESGSSLMQRADHALYEAKSAGRDRI 1007 >gi|114319326|ref|YP_741009.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] gi|114225720|gb|ABI55519.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] Length = 437 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 75/156 (48%), Gaps = 11/156 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G LN +L E+ LS+ D+D+FK++ND +GH VGD+V+ L Sbjct: 279 DQLTGALNRRRIEQALAREMERSNRHGDALSVALLDVDHFKRVNDQYGHNVGDRVLQTLI 338 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + +GR GGEEF + A LA LR I + G +T Sbjct: 339 RRCKENLRAVDLIGRWGGEEFLIVLPDTDRHSALQLAERLRARIAERARADTHG----VT 394 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+A E + ++ RAD ALY AK GRNRV Sbjct: 395 VSLGLASFRPGEGLDQLVKRADDALYRAKDRGRNRV 430 >gi|15641198|ref|NP_230830.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587807|ref|ZP_01677566.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|153819081|ref|ZP_01971748.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|153823230|ref|ZP_01975897.1| GGDEF family protein [Vibrio cholerae B33] gi|227081357|ref|YP_002809908.1| GGDEF family protein [Vibrio cholerae M66-2] gi|229505221|ref|ZP_04394731.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229511109|ref|ZP_04400588.1| GGDEF family protein [Vibrio cholerae B33] gi|229518228|ref|ZP_04407672.1| GGDEF family protein [Vibrio cholerae RC9] gi|229608240|ref|YP_002878888.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254848311|ref|ZP_05237661.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255745593|ref|ZP_05419541.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262158333|ref|ZP_06029449.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|298498713|ref|ZP_07008520.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|9655662|gb|AAF94344.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547971|gb|EAX58052.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|126510364|gb|EAZ72958.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|126519244|gb|EAZ76467.1| GGDEF family protein [Vibrio cholerae B33] gi|227009245|gb|ACP05457.1| GGDEF family protein [Vibrio cholerae M66-2] gi|229344943|gb|EEO09917.1| GGDEF family protein [Vibrio cholerae RC9] gi|229351074|gb|EEO16015.1| GGDEF family protein [Vibrio cholerae B33] gi|229357444|gb|EEO22361.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229370895|gb|ACQ61318.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254844016|gb|EET22430.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255736668|gb|EET92065.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262029774|gb|EEY48422.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|297543046|gb|EFH79096.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 443 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L +S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203 + SD+LV R GGEEF ++ ++A LA LR KI Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S I+ + IT S GIA+ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427 >gi|262171598|ref|ZP_06039276.1| GGDEF family protein [Vibrio mimicus MB-451] gi|261892674|gb|EEY38660.1| GGDEF family protein [Vibrio mimicus MB-451] Length = 384 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 17/226 (7%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF---- 94 +A V+ I + L Y+ L + L + V S ++I +L I G++L LF Sbjct: 161 LAAVLAIMMVML-YVPLVAYQTLPLMAVFRASTIVIQ---NLFFFIILGTMLM-LFLFEE 215 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 I ++R+ + D L+G N F L + + DID+FKQIND++GH + Sbjct: 216 IEWHRLRSIR--DELTGSFNRRYFKEQVQRQLNQSDTPYVVALVDIDHFKQINDSYGHDM 273 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD VI F+ +L + T V R GGEEFA A + + + ND+ I SQ Sbjct: 274 GDAVITFVVRKLESLNLTDCLVARYGGEEFAVFAREADAERVKEVLNDVCDAI--SQGFC 331 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+ +++S G + +AD A+Y AK+ GRNRV+ Sbjct: 332 IENQSLKVSVSIGAVLFDTPFDYGEALRKADSAMYQAKEQGRNRVM 377 >gi|92113846|ref|YP_573774.1| diguanylate cyclase with PAS/PAC sensor [Chromohalobacter salexigens DSM 3043] gi|91796936|gb|ABE59075.1| diguanylate cyclase with PAS/PAC sensor [Chromohalobacter salexigens DSM 3043] Length = 733 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 13/161 (8%) Query: 107 DCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F L ++ E+ +++ FD+D FK IND+ GH +GD+++ ++ Sbjct: 571 DPLTGLLNRRGFDRRLNDTFMAFKERGDVAALILFDLDSFKPINDDGGHALGDEMLDAIA 630 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + RLGG+EFA G Q+A +A+ +R + + + G +T Sbjct: 631 RCLEGCVRRDDHLARLGGDEFAILLPGCGHQQAVRIADKVRHAVSELSV-VQDGKRYRVT 689 Query: 220 ISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVC 257 S G++ C + ++ RAD A Y AK G+NR+V Sbjct: 690 ASLGVS--CLGSDDDEAQAVVKRADAASYEAKAQGKNRMVA 728 >gi|46199699|ref|YP_005366.1| putative response regulator protein [Thermus thermophilus HB27] gi|46197325|gb|AAS81739.1| putative response regulator protein [Thermus thermophilus HB27] Length = 531 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N L Y +S+V DID FK +ND +GHPVGD+V+ L Sbjct: 373 DPLTGLFNRRGLEVELPKLLALSRRYRAPVSVVMLDIDRFKAVNDTYGHPVGDEVLRRLG 432 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF G+ + A + +R+ + ++ P +T Sbjct: 433 RILKQSVRKEDLAVRYGGEEFLLVLFGAEREAAKEVVERIRERFRSERVAPIPYP---LT 489 Query: 220 ISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +SAGIA +E + I +AD AL AK++GR+RV Sbjct: 490 LSAGIAGGEVPEGRETLEEWILKADYALLRAKETGRDRVTL 530 >gi|90423710|ref|YP_532080.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gi|90105724|gb|ABD87761.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris BisB18] Length = 735 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 11/156 (7%) Query: 107 DCLSGLLNHSAFISSLGS----YNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F L + +N + S + DID+FK+IND GH +GD+V+ LS Sbjct: 567 DPLTGMFNRRVFNEGLAAELVRFNRQQTPFSSLLCDIDHFKEINDVHGHLMGDQVLVHLS 626 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L F+ R GGEEF +G+ + A A LR I + + ++T Sbjct: 627 RILSRSVRQTDFLARWGGEEFGILLVGADQTAAVEFAEKLRTTIAYTVFDDVG----NLT 682 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+AE + +++ R D ALY AK +GRNRV Sbjct: 683 CSFGVAECVLGDTPESLLARVDNALYRAKMNGRNRV 718 >gi|119487037|ref|ZP_01620909.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] gi|119455966|gb|EAW37100.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] Length = 242 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 14/194 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFK 140 +L++L + L+ +D L+ L N F + L EK LS++ D+D+FK Sbjct: 38 QNQMLQQLQSENKELKYLANLDELTRLANRRKFYAYLYEEWEKCSEQSLSVIICDVDFFK 97 Query: 141 QINDNFGHPVGD---KVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAIL 195 ND +GH GD K IA + V P V R GGEEFA ++A + Sbjct: 98 AYNDTYGHLAGDVTLKQIAEAIQKAVQEILDPNSFLVARYGGEEFAVILPQLETEQALEI 157 Query: 196 ANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252 A +R + +I + S S +T+S G+A R ++ +S ++ AD++LY AK GR Sbjct: 158 AEQIRSHVAALKIPHKQSKVSSCVTLSLGVATRKPEDKLSPLELLMNADKSLYKAKSKGR 217 Query: 253 NRVVCFSDIENNTC 266 NRVV +S +++ +C Sbjct: 218 NRVV-YSYLQHRSC 230 >gi|157963040|ref|YP_001503074.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157848040|gb|ABV88539.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 343 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 84/168 (50%), Gaps = 19/168 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDK 153 +S LS D L+G LN +SL + +EK I DIDYFK +ND GH +GD+ Sbjct: 173 LSYLSTRDSLTGALNRHQLDASLIAASEKAKMDQATCIAAIDIDYFKDVNDLHGHDMGDQ 232 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 VI + + + RLGG+EF ++ E+A+ KI N ++ G Sbjct: 233 VIKTVVKLINSHCRKTDLLFRLGGDEFLLL-FDNTNAESAL------KITRNIGQKVAEG 285 Query: 214 -----PSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + +T+S GIAE E + + RAD ALY AK +GRN+V Sbjct: 286 IVEAYPEVDKVTLSTGIAESIANEEVEAWVKRADMALYKAKLAGRNQV 333 >gi|77920131|ref|YP_357946.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380] gi|77546214|gb|ABA89776.1| GGDEF domain containing protein [Pelobacter carbinolicus DSM 2380] Length = 648 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 7/171 (4%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDN 145 L +S R +L+ D L+GL N F + L N+ +++ DID FK ND Sbjct: 458 LRVSERRHMELAFTDALTGLFNMRYFRTQLDLAIQCAEPLNQSFTLMMMDIDNFKLFNDR 517 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD+V+ L + V R GGEEFA G Q A + L+ + Sbjct: 518 YGHLQGDQVLRQLGQMIGSVIREKDVACRYGGEEFAVILPGGDFQTAVDIYTRLQGTLLQ 577 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 Q + +T+S G+AE E +I RAD A+Y AK+ GR+++V Sbjct: 578 WQEHEKESLISLVTLSVGVAEYFPGEHADDLIARADSAMYEAKEGGRDQLV 628 >gi|147671442|ref|YP_001215230.1| GGDEF family protein [Vibrio cholerae O395] gi|262169120|ref|ZP_06036813.1| GGDEF family protein [Vibrio cholerae RC27] gi|146313825|gb|ABQ18365.1| GGDEF family protein [Vibrio cholerae O395] gi|262022401|gb|EEY41109.1| GGDEF family protein [Vibrio cholerae RC27] Length = 303 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 15/170 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLN---------HSAFISSLGSYNEKLSIVFFDIDYFKQI 142 +++ +Y I S D L+GLLN H+ I+ N KL I DID+FK I Sbjct: 132 KIYRNYTVILHESERDKLTGLLNRRTLEDRLRHTFAINPSTEENHKLWIAMLDIDHFKAI 191 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+FGH +GD+++ + Q+ FG + R GGEEF +E + + R+ Sbjct: 192 NDHFGHMIGDEILLMFAQQMQHYFGPSSQLFRFGGEEFVIIFSSGNEPQIKQQLDGFRQ- 250 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 QI + P I ++ SAG + + TI+ AD+ALY AK+ G Sbjct: 251 ----QIRRHNFPRIGELSFSAGFCSLRPGDYLPTILDHADKALYYAKEHG 296 >gi|289662906|ref|ZP_06484487.1| hypothetical protein XcampvN_07423 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 517 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 88/181 (48%), Gaps = 20/181 (11%) Query: 96 SYNRISQLSRI---DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145 S NR+ L+ D L+G+ N ++L E LSI F D+D FK++ND Sbjct: 327 SENRMRHLAEQASRDALTGVFNRHQLGTALTHEFELASRQGWLLSIAFIDLDDFKRVNDA 386 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKII 203 GH VGD+V+ + L + T V R GGEEF L + +AA++ + L + Sbjct: 387 HGHLVGDEVLRNFAQTLQRMVRTSDLVARYGGEEF-LVILPKTPADAALMVIERILTETA 445 Query: 204 ENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + GP +HIT SAG+A ER E I ++ AD LY +K GRNRV + Sbjct: 446 RTPMAQLPGGP-LHITFSAGLATHGGVER-QFESIEHLLQAADSTLYRSKHRGRNRVTAY 503 Query: 259 S 259 Sbjct: 504 D 504 >gi|240140595|ref|YP_002965075.1| putative diguanylate cyclase (GGDEF) [Methylobacterium extorquens AM1] gi|240010572|gb|ACS41798.1| putative diguanylate cyclase (GGDEF) [Methylobacterium extorquens AM1] Length = 390 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 20/177 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R ++++R D L+GL N ++++G+ + L + DID+FK+ ND GH G Sbjct: 216 ERNAEMARTDQLTGLFNRH-HLATIGADLIPKRDTQSLGALLIDIDHFKRFNDTQGHLAG 274 Query: 152 DKVIAFLSDQLVVVFGTPM-----FVG---RLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ I +SD LV P VG R GGEEF G AA L +R+ + Sbjct: 275 DRCIRTVSD-LVREMLAPANENKPPVGTAVRFGGEEFLVLLPGMDAARAAALGEAIRRRV 333 Query: 204 ENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 E I + GP+ +T+S G+A+ + H E + T++ AD ALY AK GRNRV Sbjct: 334 EGVGIPHPGLGPNAVVTLSIGVADWKKGHTE-LDTLVNAADAALYQAKNLGRNRVAV 389 >gi|154269333|gb|ABS72183.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica subsp. enterica serovar Weltevreden] Length = 370 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 27/204 (13%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG--------LLNHSAFI 119 LSL +I + LL ++S +L R+ +S D ++G +L + F Sbjct: 174 TLSLPVIML-YPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVYIRRHWEILLRNEFD 232 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 S + E +++ DID+FK ND +GH VGD+ I L+ QL + +GR GG+E Sbjct: 233 HSRRHHREA-TLLIIDIDHFKSTNDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDE 291 Query: 180 FAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII- 237 FA G+ ++AI A + ++ E + + + P + + IS G+A P++ I Sbjct: 292 FAVIMCGTPA-DSAITA--MSRVHERLNTLCLPGAPQVMLRISVGVA------PLTPQIG 342 Query: 238 -YR-----ADQALYVAKKSGRNRV 255 YR AD ALY AK +GRNR Sbjct: 343 HYREWLKSADMALYKAKNAGRNRT 366 >gi|89072583|ref|ZP_01159155.1| putative c-di-GMP phosphodiesterase A-related protein [Photobacterium sp. SKA34] gi|89051687|gb|EAR57140.1| putative c-di-GMP phosphodiesterase A-related protein [Photobacterium sp. SKA34] Length = 690 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 17/172 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +I QL ++D L+GLLN F L + +++ DID FK IND+ GH +GDKV+ Sbjct: 263 QIEQLVQMDPLTGLLNRYGFTRQLDQLMKAETPVVMLYIDIDNFKNINDSLGHHIGDKVL 322 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP- 214 ++ +L + +G L G+EF A L + E E +II I + + P Sbjct: 323 QEIAQRLRRLLPETAILGYLSGDEF-AILLPNPEHERT------GEIISEQIIALVNQPF 375 Query: 215 -----SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 H+ S G + H ++ AD A+Y AK GRNR+V F+D Sbjct: 376 ELRHFRKHLACSIGMVTSPGHGNDARMMLQNADTAMYEAKHRGRNRLVEFND 427 >gi|229529727|ref|ZP_04419117.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|229333501|gb|EEN98987.1| GGDEF family protein [Vibrio cholerae 12129(1)] Length = 443 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L +S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203 + SD+LV R GGEEF ++ ++A LA LR KI Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S I+ + IT S GIA+ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 382 DHSWIHGGA-----ITCSLGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427 >gi|158334794|ref|YP_001515966.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158305035|gb|ABW26652.1| diguanylate cyclase domain protein [Acaryochloris marina MBIC11017] Length = 393 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 102/198 (51%), Gaps = 22/198 (11%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSI 131 +LL+GY+ ++ ++ QL+ ID ++ + N F + ++ LS+ Sbjct: 201 TLLVGYLLMQFVRARQRLLEKVEQLATIDDVTQIANRRHFNAVFAQEWQRMLREQSCLSL 260 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEF----AAAALG 186 + D+D FK ND++GH GD + ++ + P F R GGEEF L Sbjct: 261 LLCDVDCFKAYNDHYGHQAGDSCLFQIAQTIHNCMRRPSDFAARYGGEEFVIILPHTQLS 320 Query: 187 SSEQEAAILANDLRKI-IENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQ 242 ++ +A ++ +L+K+ + +++ +IS +I I I++GI + H+ II +AD+ Sbjct: 321 GAQAQAQVIQENLQKLALAHAESSISDYVTISIGIASGIPQLELNAHQ-----IIEQADK 375 Query: 243 ALYVAKKSGRNRVVCFSD 260 ALY AK GRNR CFS+ Sbjct: 376 ALYQAKAQGRNR-SCFSE 392 >gi|126699861|ref|YP_001088758.1| putative signaling protein [Clostridium difficile 630] gi|115251298|emb|CAJ69129.1| putative diguanylate kinase signaling protein [Clostridium difficile] Length = 391 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 30/245 (12%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFIS 96 F +VI FLF P G++ I S ++ + I+ L ++S + + +F Sbjct: 147 FGESVIVFGGCFLFLNLFLP--GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTY 204 Query: 97 YNRI---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFF 134 Y+++ Q I ++ LLN L N E ++ + Sbjct: 205 YDKLLISQQYEEISHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMI 264 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEA 192 DIDYFKQ NDN+GH GD + ++ ++++ F + R GGEEF +E +A Sbjct: 265 DIDYFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCNEADA 323 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKS 250 + + LRKIIE+ P +T+S G+ + ++ I+ I D+ALY AK+ Sbjct: 324 KLKSECLRKIIESCNFERDDVPLKCVTVSIGVYTKKIEKTITLNEFISNCDKALYTAKEQ 383 Query: 251 GRNRV 255 GRN V Sbjct: 384 GRNCV 388 >gi|90579795|ref|ZP_01235604.1| hypothetical protein VAS14_02496 [Vibrio angustum S14] gi|90439369|gb|EAS64551.1| hypothetical protein VAS14_02496 [Vibrio angustum S14] Length = 353 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 77/155 (49%), Gaps = 7/155 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 S +D L+GLLN S+ + + S N L ++ DID+FK IND +GH GD I + L Sbjct: 189 SSVDMLTGLLNRSSLNNVINSNNHTLKALALLDIDHFKSINDAYGHDAGDGAIKAFASCL 248 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDLRKIIENSQINISSGPSIHITI 220 R GG+EF G +A + + LR +E ++I P T+ Sbjct: 249 KENIRDTDVAFRWGGDEFLVLIRGQVNDNIDAYCVFDRLRTTVE--AMDIDGVP--KFTV 304 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G I T+I +AD ALY +KK+GRNRV Sbjct: 305 SIGYCSYDSNVDIKTLIKQADLALYDSKKTGRNRV 339 >gi|89954507|gb|ABD83655.1| response regulator protein-like [Rickettsia honei] Length = 450 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F I + KL ++ DID FK +ND +GH GDKV+ +S Sbjct: 291 DGLTGLFNRRYFDIHLKQIIEKANKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVS 350 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218 L + R GGEEF +A A +R I+ +I + Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIKYMNFHIEDQIEPLKT 410 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G+ + +E I + I RAD+A+Y AK +G+N+VV Sbjct: 411 TVSIGVTKYKKEESIESFIERADKAMYEAKTTGKNKVV 448 >gi|323976594|gb|EGB71682.1| GGDEF domain-containing protein [Escherichia coli TW10509] gi|327253426|gb|EGE65064.1| diguanylate cyclase domain protein [Escherichia coli STEC_7v] Length = 289 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 124/251 (49%), Gaps = 40/251 (15%) Query: 37 IFIATVIFIANIFLFYIGLTPFYGLEYI----LVENLSLVIISITISLLLGYISGSI--- 89 IF+ ++ + N++ + + G+ I ++ N+SL+ +S S+ YIS +I Sbjct: 34 IFMWLILLLVNLYFNGLRCDIWNGVSVIAFCAVLYNISLLFMS-RYSVSTWYISRTIEVV 92 Query: 90 ---------LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLS--IVFFD 135 + +F + ++ D L+ + N + F + L + + +K S ++ D Sbjct: 93 SKLTVMVIFMCHIFSALRVTKNIAHRDPLTNIFNRNYFFNELKAQSASAQKTSYCVMIMD 152 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQE 191 ID+FK++ND +GHPVGD+VI +V + G + + R+GGEEF + + Sbjct: 153 IDHFKKVNDTWGHPVGDQVIK----TVVSIIGKSIRPNDLLARVGGEEFGVLLTETDTES 208 Query: 192 AAILANDLRKIIE-----NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALY 245 A +LA +R +E N + I + I+I A + + P IYR AD ALY Sbjct: 209 AKVLAERIRANVERLTGDNPEYAIPQ--KVTISIGAVVTQGSALNP--NEIYRMADNALY 264 Query: 246 VAKKSGRNRVV 256 AK++GRN++V Sbjct: 265 EAKETGRNKIV 275 >gi|300114835|ref|YP_003761410.1| response regulator receiver modulated diguanylate cyclase [Nitrosococcus watsonii C-113] gi|299540772|gb|ADJ29089.1| response regulator receiver modulated diguanylate cyclase [Nitrosococcus watsonii C-113] Length = 327 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 14/181 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 + + L ++ ++ QL+ +D L+G+ N F ++ ++ LS++ DID FK Sbjct: 143 DLTRRLEMANEQLRQLTSLDDLTGIANRRQFEVTIHQEFQRAMRNKTALSLIMIDIDNFK 202 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND +GH GD + ++ L V P + R GGEEFA +S + A+ +A L Sbjct: 203 VYNDIYGHQTGDNCLRRVAAALDSVLKRPNDLLARYGGEEFAVILPETSSKGASNIAESL 262 Query: 200 RKIIENSQI--NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNR 254 R+ +E +I + +S ++ +T+S G+A + EP + +I ADQALY +K +GRN+ Sbjct: 263 RQAVEILKIPHSYASQNNLRVTVSLGVATLIPQRGDEP-TKLISVADQALYQSKHAGRNQ 321 Query: 255 V 255 V Sbjct: 322 V 322 >gi|257874943|ref|ZP_05654596.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257809109|gb|EEV37929.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 369 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 12/170 (7%) Query: 97 YNRISQL--SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 Y +++L S+ID L+G N+ + L S + ++I D+D+FK++ND +GH G Sbjct: 195 YQVLAELANSKIDALTGCFNYGTYNHDLLQAVSQKKTVTIAMIDLDHFKKVNDRYGHIAG 254 Query: 152 DKVIAFLSDQLVVV----FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 ++++ + + F R GGEEF G +++ L + I +S Sbjct: 255 NELLRTFATRTTTFLEAHFAETFSFYRYGGEEFCVVIEGDVKEKTVAAMTTLCQTISSSM 314 Query: 208 INISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ +++S G+ + CH + ++ + RADQALY+AK+SGRNRV Sbjct: 315 FPVANFEKGTMSLSCGVEASTVCHGDILAAV-ERADQALYLAKQSGRNRV 363 >gi|254506275|ref|ZP_05118418.1| ggdef family protein [Vibrio parahaemolyticus 16] gi|219550755|gb|EED27737.1| ggdef family protein [Vibrio parahaemolyticus 16] Length = 387 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 11/175 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 K L + ++ +LS D L+ L N I L Y NE L + D DYFKQ+N Sbjct: 193 KALSEANKQLEELSLTDSLTNLPNRRCAIRKLKVYWQESVQNNEPLVCIMIDADYFKQVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+++ LS L F + V RLGG+EF + + +A R + Sbjct: 253 DTAGHDAGDRLLIELSQNLAHSFRSDDLVCRLGGDEFFVICPNTDLEGGLHIAEITRDRV 312 Query: 204 ENSQINISSGPSI-HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 SQ+ + G S+ +IS G+ R + + +I AD A+Y+AK SGRN+V Sbjct: 313 --SQMLVPVGESVWRGSISVGVGVRTPNMNDYNDLIKVADNAVYLAKSSGRNQVA 365 >gi|153215333|ref|ZP_01949946.1| GGDEF family protein [Vibrio cholerae 1587] gi|124114776|gb|EAY33596.1| GGDEF family protein [Vibrio cholerae 1587] Length = 443 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L +S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203 + SD+LV R GGEEF ++ ++A LA LR KI Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S I+ + IT S GIA+ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427 >gi|322434508|ref|YP_004216720.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9] gi|321162235|gb|ADW67940.1| diguanylate cyclase [Acidobacterium sp. MP5ACTX9] Length = 460 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 101/217 (46%), Gaps = 24/217 (11%) Query: 71 LVIISITISLLLGYISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY- 125 L +S+ S GY+S I K L + + ++S ID L+ L N L S Sbjct: 245 LAGMSLENSERRGYLSHMIADLQSKALTRANQELQRVSSIDKLTSLPNRRTLEERLASMW 304 Query: 126 ------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178 N+ LS+V D+D+FK IND FGH GD+ + + L+ + GR GGE Sbjct: 305 VACHQLNDFLSVVLIDVDHFKSINDTFGHLSGDQTLRAIGAVLLHGLRNQDDLAGRFGGE 364 Query: 179 EFAAAALGSSEQEAAILANDLRKII----ENSQINISSGPSIHITISAGIAERCHKE--- 231 EF + EA +A+ +R ++ S+ +TIS G++ C+ Sbjct: 365 EFLVLLPHTGPTEAIEVADRIRTLVAGAPPRSRRTDDKQDPWPVTISCGVSS-CNPRSGF 423 Query: 232 PISTIIYRADQALYVAKKSGRNRV---VCFS-DIENN 264 I ++ AD ALY AK+SGRNRV C + D E N Sbjct: 424 EIDDLLRLADAALYNAKRSGRNRVEYQACTAHDPEGN 460 >gi|299531700|ref|ZP_07045105.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298720416|gb|EFI61368.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 397 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 124/245 (50%), Gaps = 22/245 (8%) Query: 28 MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87 +++ S+ F+ + T I ++ L Y F Y L+ +S++ +I ++++ I+ Sbjct: 153 LLWLSMIFTAYTLTRPMIISL-LGYPDPRSFPRSPYWLLTLVSILNFAILFTVVMTVIAA 211 Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 KE + ++ + +D L+ +LN +F ++ + Y ++++ DID+FK Sbjct: 212 ---KE---TVGKLQKERDLDTLTQILNRRSFHEYALKILTDMRLY--PMAVLACDIDHFK 263 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND +GH GDKV+ +S L V R GGEEF + + ++A +A +R Sbjct: 264 RINDTWGHEYGDKVLQLVSATLQNHVRERDLVARFGGEEFVILLIDIALRDAEEIAQRIR 323 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV----V 256 + + +++ + SG +T+S GI+ + + ADQ LY AK +GR++V V Sbjct: 324 QDLRSNKDLLLSG--TKLTMSFGISSITDPSQLDHALREADQLLYQAKNAGRDQVHVSGV 381 Query: 257 CFSDI 261 + DI Sbjct: 382 SYPDI 386 >gi|299134767|ref|ZP_07027959.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Afipia sp. 1NLS2] gi|298590577|gb|EFI50780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Afipia sp. 1NLS2] Length = 904 Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 15/164 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +RI+ ++R D L+ L N + F + + E L+++ DID FKQ+ND GH VGD++ Sbjct: 475 DRIAHMARYDALTDLPNRTMFRDHLDKMLKKEENLAVLSIDIDEFKQVNDTLGHFVGDEL 534 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--- 211 + ++++L V RLGG+EFA G E+ ++L +IE I Sbjct: 535 LVSIANRLSGCMERDDIVARLGGDEFAIIRHGVQER------SELIPLIERVHAAIRVPY 588 Query: 212 --SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252 +G ++ S GIA C + ++ AD ALY AK SGR Sbjct: 589 DCTGHHLNADASIGIAMSPCDGSELEGLLRNADLALYAAKGSGR 632 >gi|253995574|ref|YP_003047638.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera mobilis JLW8] gi|253982253|gb|ACT47111.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera mobilis JLW8] Length = 310 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 20/214 (9%) Query: 62 EYILVENLSLVIISIT--ISLLLGYI-----SGSILKELFISYNRISQLSRIDCLSGLLN 114 EY+ + ++ V+ + + L+G++ + ++L + + +LS D L+G+ N Sbjct: 98 EYVWIRDVVHVVRNAEGMVEALIGFMFDITERKNTEQKLIVLQKELEELSFKDALTGVYN 157 Query: 115 HSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 F S + ++ LS++ DIDYFKQ ND++GH GD+ + ++ L V G Sbjct: 158 RRMFDSVMEVEWANAKRNHQPLSLLMLDIDYFKQYNDHYGHIHGDECLKLVAKALSNV-G 216 Query: 168 TPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI 224 T F R GGEEF + A ++A R +I +QI + S S +T+S G+ Sbjct: 217 TRSRDFFARFGGEEFIVVLPETDAAAANMIAERCRSLIFKAQIPHEKSLVSQILTVSIGV 276 Query: 225 AE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + H + +I + D+ LY AK+ GRNR+ Sbjct: 277 STIIPAHSDQAIDLIAKVDRQLYQAKEKGRNRIA 310 >gi|229525824|ref|ZP_04415229.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229339405|gb|EEO04422.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] Length = 372 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++L+ ++ LS D L+GL N + L + V DID FK +N Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH VGDKV+ +++ L F + V RLGG+EF ++ +A + + I Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I++ + ++S G+A + H E ++ ADQA+Y+AK SG+NRV F Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368 >gi|227081388|ref|YP_002809939.1| GGDEF family protein [Vibrio cholerae M66-2] gi|227009276|gb|ACP05488.1| GGDEF family protein [Vibrio cholerae M66-2] Length = 372 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++L+ ++ LS D L+GL N + L + V DID FK +N Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH VGDKV+ +++ L F + V RLGG+EF ++ +A + + I Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I++ + ++S G+A + H E ++ ADQA+Y+AK SG+NRV F Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368 >gi|149908734|ref|ZP_01897395.1| putative transcriptional regulator [Moritella sp. PE36] gi|149808276|gb|EDM68215.1| putative transcriptional regulator [Moritella sp. PE36] Length = 406 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 7/161 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +++ +++ D L+GL N F S S +E +I DID+FK++NDN+GH GD V+ Sbjct: 249 DKLYKMANQDALTGLWNRRYFFSQHSSSSTSEHKNIAMLDIDFFKKVNDNYGHDGGDTVL 308 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S QL F + V R GGEEF + S + +R IE + + Sbjct: 309 VAISQQLQHHFSDAI-VARFGGEEFCIQS-NSDRADFVPQLELIRHKIEQLTMK-HNDEE 365 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I ITIS G++ +PI +I AD LY AK +GRN+VV Sbjct: 366 IKITISIGVS--FGNKPIDEMISEADARLYKAKTNGRNQVV 404 >gi|34558149|ref|NP_907964.1| signal transduction response regulator [Wolinella succinogenes DSM 1740] gi|34483868|emb|CAE10864.1| SIGNAL TRANSDUCTION RESPONSE REGULATOR-CheY like receiver and GGDEF domain [Wolinella succinogenes] Length = 501 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 17/170 (10%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + LS D L+ + N A IS + S+V FDID FK++ND +GH GD Sbjct: 339 LEHLSFFDHLTQIANRRALEERIRKSISRFELERQSFSMVIFDIDDFKRVNDTYGHGAGD 398 Query: 153 KV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V IA L+ + + G M GR GGEEF +S A +A LR+ I + Sbjct: 399 EVLKQIARLAKE--SIRGEDM-AGRWGGEEFVIYLHHASISSAHEIAERLRQKIARHAFD 455 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P +T S G++E ++I RAD+ALY AK+ G+N+ + S Sbjct: 456 ----PRFKVTCSFGVSEFREGMDFDSLISRADEALYEAKRQGKNQTILAS 501 >gi|319651729|ref|ZP_08005855.1| hypothetical protein HMPREF1013_02467 [Bacillus sp. 2_A_57_CT2] gi|317396548|gb|EFV77260.1| hypothetical protein HMPREF1013_02467 [Bacillus sp. 2_A_57_CT2] Length = 549 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 9/142 (6%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 E LS++ DID+FK++ND +GH G++++ L+ +L + R GGEEF Sbjct: 406 REFLSLIILDIDHFKKVNDTYGHQSGNEILCELAGRLANLIDEAGIAARYGGEEFVVLMP 465 Query: 186 GSSEQEAAILANDLRKIIENS----QINI---SSGPSIHITISAGIAERCHKEPIS-TII 237 +S+++ A +R+ I N + NI SS ++IT S G+A S +I Sbjct: 466 DTSKEDTLAWAELIRQTIANRPFILKQNIDGSSSSTKVYITASIGVAAAPEDADDSLALI 525 Query: 238 YRADQALYV-AKKSGRNRVVCF 258 AD+ALYV AK++GRNRV + Sbjct: 526 RHADRALYVGAKRAGRNRVAEY 547 >gi|229515566|ref|ZP_04405025.1| GGDEF family protein [Vibrio cholerae TMA 21] gi|229347335|gb|EEO12295.1| GGDEF family protein [Vibrio cholerae TMA 21] Length = 443 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L +S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203 + SD+LV R GGEEF ++ ++A LA LR KI Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S I+ + IT S GIA+ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427 >gi|229520386|ref|ZP_04409811.1| GGDEF family protein [Vibrio cholerae TM 11079-80] gi|229525795|ref|ZP_04415200.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229339376|gb|EEO04393.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229342484|gb|EEO07477.1| GGDEF family protein [Vibrio cholerae TM 11079-80] Length = 443 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L +S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203 + SD+LV R GGEEF ++ ++A LA LR KI Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S I+ + IT S GIA+ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427 >gi|158426062|ref|YP_001527354.1| putative signal transduction protein [Azorhizobium caulinodans ORS 571] gi|158332951|dbj|BAF90436.1| putative signal transduction protein [Azorhizobium caulinodans ORS 571] Length = 443 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 13/165 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151 R+ + D L+GL N AF + G E S+V FD+D FKQ+ND +GHP G Sbjct: 256 RLRHAADTDFLTGLFNRRAFFAQGGQQAEACRLARHPYSVVIFDLDDFKQVNDGYGHPAG 315 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQIN 209 D V+ + GRLGGEEFA G + A A R++++ Sbjct: 316 DAVLRAFALAARECLSPEDVAGRLGGEEFALVLPGLDGRAAVSTA---RRVLDRFTHHAR 372 Query: 210 ISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ ++ T S G+ A R + + ++ AD ALY AK+ G N Sbjct: 373 AATPHNLCCTASGGVAASRLGQATVEVLLNDADLALYEAKREGDN 417 >gi|90022182|ref|YP_528009.1| hypothetical protein Sde_2537 [Saccharophagus degradans 2-40] gi|89951782|gb|ABD81797.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 456 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 8/164 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L+R D L+ L+N + L S + + + DID FK IND +G+ VG Sbjct: 289 QLRDLARTDYLTTLINRREMTNILRSVCIDYKVHPKPFVVTLMDIDDFKNINDCYGNGVG 348 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ L +L + T + R GGEE ++ +AA+ A LRK IE + ++ Sbjct: 349 DEVLLSLCKRLSAMLDTKEVLARWGGEELLFLMNDATLTDAALRAEALRKTIEGMEFSVD 408 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + IT S G+AE + + I A ALY AK+ G+NRV Sbjct: 409 NNI-VSITASFGLAEYEVERGLDATIKEAGLALYRAKRLGKNRV 451 >gi|34496598|ref|NP_900813.1| hypothetical protein CV_1143 [Chromobacterium violaceum ATCC 12472] gi|34102452|gb|AAQ58818.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 454 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 32/192 (16%) Query: 93 LFISYNR----ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDID----------- 137 L ISY + + Q ++ D L+ L NH F +E+ + +F Sbjct: 268 LLISYEQLLLQVRQQAQQDGLTQLYNHRTF-------HEQAAAMFARAQRAGDALALLLI 320 Query: 138 ---YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 +FK++ND +GH GD+V+ L+D L +GR GGEEF +S EA Sbjct: 321 DLDHFKEVNDRYGHQAGDEVLRQLADCLRAESRQGDLLGRHGGEEFVVMLPQASRVEAGN 380 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVAKKS 250 +A+ LR+ I N + + + + ISA I C + P ++++ AD LY AK+ Sbjct: 381 VADRLRQAIVNLEPKVG---ELRLPISASIGVACLRPPEHDSLASLFLEADLLLYQAKRK 437 Query: 251 GRNRVVCFSDIE 262 GRNRV + E Sbjct: 438 GRNRVEIAREAE 449 >gi|33592585|ref|NP_880229.1| hypothetical protein BP1492 [Bordetella pertussis Tohama I] gi|33572231|emb|CAE41781.1| hypothetical protein BP1492 [Bordetella pertussis Tohama I] gi|332382002|gb|AEE66849.1| hypothetical protein BPTD_1474 [Bordetella pertussis CS] Length = 365 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 77/170 (45%), Gaps = 13/170 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN-----------EKLSIVFFDIDYFKQINDNF 146 R++ LSR D L+ ++N AF S + L DID+FKQIND + Sbjct: 175 ERLTHLSRTDPLTQIMNRRAFTESFQTRRLEGERRRAEVGTGLGFAVVDIDHFKQINDTY 234 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH VGD V+AF+ + F V R GGEEF E L R + + Sbjct: 235 GHDVGDVVLAFVGKMMNEFFRESDCVARFGGEEFCVLMQDVDEGGMQRLLERFRVALGDC 294 Query: 207 QINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + S+G ++ IT S G + + I AD ALY AK GRNRV Sbjct: 295 VVTHSAG-TVSITASIGAVLVKTSVAGIDRAFRSADLALYKAKADGRNRV 343 >gi|327483885|gb|AEA78292.1| GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 443 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L +S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203 + SD+LV R GGEEF ++ ++A LA LR KI Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S I+ + IT S GIA+ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 382 DHSWIHGGA-----ITCSLGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427 >gi|311105868|ref|YP_003978721.1| sensory box protein 4 [Achromobacter xylosoxidans A8] gi|310760557|gb|ADP16006.1| sensory box protein 4 [Achromobacter xylosoxidans A8] Length = 570 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 9/165 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVG 151 + +L+ D L+ L N F+S + + ++ +++ D+D+FK+IND +GH +G Sbjct: 397 LRELAATDALTTLPNRRHFMSRIAAELARIKRQGSDCAAVLMCDLDHFKRINDTWGHAIG 456 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ L VGR+GGEEFA + + A A +++ I + ++ Sbjct: 457 DGVLQHFANTLRAQLRAVDLVGRIGGEEFAVVLPDTDIERAHAFATRVQQRIAAAPFSLG 516 Query: 212 SGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRV 255 I +T+S GI+ + + + + R+D+ALY AK+ GRNR+ Sbjct: 517 DDRHIPLTVSIGISTMHTLDADAELALSRSDRALYYAKQRGRNRI 561 >gi|257865351|ref|ZP_05645004.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257871681|ref|ZP_05651334.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257799285|gb|EEV28337.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257805845|gb|EEV34667.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 369 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 12/170 (7%) Query: 97 YNRISQL--SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 Y +++L S+ID L+G N+ + L S + ++I D+D+FK++ND +GH G Sbjct: 195 YQVLAELANSKIDALTGCFNYGTYNHDLLQAVSQKKTVTIAMIDLDHFKKVNDRYGHIAG 254 Query: 152 DKVIAFLSDQLVVV----FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 ++++ + + F R GGEEF G +++ L + I +S Sbjct: 255 NELLRTFATRTTTFLEAHFAETFSFYRYGGEEFCVVIEGDVKEKTVAAMTTLCQTISSSM 314 Query: 208 INISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ +++S G+ + CH + ++ + RADQALY+AK+SGRNRV Sbjct: 315 FPVANFEKGTMSLSCGVEASTVCHGDILAAV-ERADQALYLAKQSGRNRV 363 >gi|255318986|ref|ZP_05360211.1| diguanylate cyclase [Acinetobacter radioresistens SK82] gi|262378277|ref|ZP_06071434.1| signaling protein [Acinetobacter radioresistens SH164] gi|255304003|gb|EET83195.1| diguanylate cyclase [Acinetobacter radioresistens SK82] gi|262299562|gb|EEY87474.1| signaling protein [Acinetobacter radioresistens SH164] Length = 527 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 8/153 (5%) Query: 107 DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ L N F+ + + SI+ DID FK++ND +GH +GD+V+ L+ + Sbjct: 376 DALTQLFNRRGMEIFVKEMIDSDIHFSILLIDIDRFKRVNDTYGHDIGDEVLKILAKLIQ 435 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 F R GGEEF +++QE A R+I+E +IN + G ITIS G Sbjct: 436 ENFRKEDLCCRYGGEEFIVVIPNNNKQEIYESAERFRRIVEAFEIN-NVG---RITISIG 491 Query: 224 IAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 IA E + ++ AD LY AK +GRN++ Sbjct: 492 IASWPDSAEEFAQVLKIADNNLYYAKNNGRNQI 524 >gi|229490389|ref|ZP_04384230.1| diguanylate cyclase [Rhodococcus erythropolis SK121] gi|229322679|gb|EEN88459.1| diguanylate cyclase [Rhodococcus erythropolis SK121] Length = 471 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 21/210 (10%) Query: 67 ENLSLVIISITISLLLGYIS----GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 E +S V S+ I L L ++ ++ E + ++Q D L+G L F+ Sbjct: 263 EGVSPVSASVQIGLSLLAVAPIAVACVILERRRALEALTQAVTHDDLTGALRRDEFLRRG 322 Query: 123 GSYN----------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 GS +S++ D+D+FK +NDN GH GD + +DQ+ Sbjct: 323 GSVTGATDPRRHSGRPVSVLMMDLDHFKMVNDNLGHRAGDTALVSFADQVRRHLDDKHLF 382 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKI-IENSQINISS-GPSIHITISAGIAERCHK 230 RLGGEEF G + A A +R+ ENS + GP T+S G+A H Sbjct: 383 ARLGGEEFVVLMAGVDLEGATETAEMIRRAQAENSSAVLGDFGP----TVSIGVACSPHG 438 Query: 231 EP-ISTIIYRADQALYVAKKSGRNRVVCFS 259 + ++ ++ AD+ALY AKK RNR V + Sbjct: 439 DADLTQLVDCADEALYRAKKLDRNRTVALT 468 >gi|254226710|ref|ZP_04920287.1| GGDEF family protein [Vibrio cholerae V51] gi|125620771|gb|EAZ49128.1| GGDEF family protein [Vibrio cholerae V51] Length = 443 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L +S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203 + SD+LV R GGEEF ++ ++A LA LR KI Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S I+ + IT S GIA+ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427 >gi|301346545|ref|ZP_07227286.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii AB056] Length = 631 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + ++ LS D L+ L N +S ++K++ ++ D+D FK +ND Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH +GD+++ ++++L + R+GG+EF A + +EA LA + +I+ Sbjct: 306 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLHLIQ 365 Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S QI SG I+I+ S GIA H + + ++ AD A+ ++K+ GRN FS Sbjct: 366 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 419 >gi|39996743|ref|NP_952694.1| GGDEF/response regulator receiver domain-containing protein [Geobacter sulfurreducens PCA] gi|39983624|gb|AAR35017.1| GGDEF/response regulator receiver domain protein [Geobacter sulfurreducens PCA] gi|307634892|gb|ADI84478.2| response receiver-modulated diguanylate cyclase [Geobacter sulfurreducens KN400] Length = 316 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 87/174 (50%), Gaps = 15/174 (8%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148 S + L+ D L+G+ N L Y +S+V FDID+FK++ND +GH Sbjct: 139 SMEEVRLLTMRDPLTGIYNRRYLEDRLHQEVKRTFRYERPISVVMFDIDHFKRVNDTWGH 198 Query: 149 PVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 VGD+V+ ++ + V + R GGEEF + A I+A LR+ I Q Sbjct: 199 LVGDQVLKACAESVRSGVRENIDWPVRYGGEEFVVVLPETDMAGAVIVAERLRQRIALIQ 258 Query: 208 INISSGPSIHITISAGIA---ERCHKEPIS---TIIYRADQALYVAKKSGRNRV 255 ++ G ++ +T S G+A KE +S ++ RAD+ LY AK GRNRV Sbjct: 259 TSVGDG-AVTVTASFGVASFTPPDQKEDLSIGEVLLERADRCLYRAKGEGRNRV 311 >gi|304410052|ref|ZP_07391671.1| diguanylate cyclase [Shewanella baltica OS183] gi|307302235|ref|ZP_07581993.1| diguanylate cyclase [Shewanella baltica BA175] gi|304351461|gb|EFM15860.1| diguanylate cyclase [Shewanella baltica OS183] gi|306914273|gb|EFN44694.1| diguanylate cyclase [Shewanella baltica BA175] Length = 584 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 18/196 (9%) Query: 74 ISITISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS-------Y 125 + +T +L L + S+ E SY ++ ++ D L+G N L + Sbjct: 382 MPVTDNLELQQMVNSL--ETLKSYAAQVKGMAETDGLTGCYNRRYLDIQLQKELEYARDH 439 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184 N L I+ FDID FKQ ND +GH GD+ + + + + P + R GGEEF Sbjct: 440 NMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVL 499 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEP----ISTIIYR 239 S +E A LR+ I + +I P I TISAGI C + P +++I R Sbjct: 500 PSSHLEEVYQFAELLREKIISLEIPHEDSPHAGILTISAGIT--CWQLPQQLDANSLINR 557 Query: 240 ADQALYVAKKSGRNRV 255 AD+ALY AK +GRNR Sbjct: 558 ADEALYHAKLTGRNRT 573 >gi|317048285|ref|YP_004115933.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pantoea sp. At-9b] gi|316949902|gb|ADU69377.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pantoea sp. At-9b] Length = 661 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140 SG+ + E + R+ L+ D ++GL N +A + + + +V+ D+D FK Sbjct: 219 SGTDITEERRAQERLRVLANTDTVTGLPNRNAIHQQISLALETAKGAQTGVVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 ++ND +GH GD+++ +S ++ G + RLGG+EF A +S E A+ + Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLGKDQTLARLGGDEFVVLAENTSQAALEAMASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + SG S+ I ++ H E ++I AD A+Y AK++GR + Sbjct: 339 ERLRQPFRIGLIEVYSGCSLGIALAP-----LHGEDRESLIRNADTAMYHAKENGRGKFC 393 Query: 257 CFS 259 F+ Sbjct: 394 VFA 396 >gi|170702307|ref|ZP_02893204.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria IOP40-10] gi|170132790|gb|EDT01221.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria IOP40-10] Length = 516 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLN----HSAFISSLG----SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 I L+R D L+GL N H+ L + + L++++ D+D FK IND FGH G Sbjct: 338 IRHLARHDALTGLPNRHELHAELRRRLAHRPRAPSPALAVMYLDLDGFKAINDRFGHQAG 397 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++++L R+GG+EF A ++ Q +ILA + + I ++ +S Sbjct: 398 DEVLTQVAERLGKTLPPGELAARIGGDEFIVAIDDTTMQACSILAARIIRQI-SAPYTLS 456 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 G ++ + IS GIA + H P +I +AD ALY AK G+ Sbjct: 457 IGATVSLGISIGIALDDGHGSP-DELIRQADSALYDAKSGGKG 498 >gi|187926918|ref|YP_001893263.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12J] gi|241665247|ref|YP_002983606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12D] gi|187728672|gb|ACD29836.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12J] gi|240867274|gb|ACS64934.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12D] Length = 652 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 23/184 (12%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGH 148 + RI L+ D L+GLLN SA +LG N ++S++F D+D FK +ND GH Sbjct: 208 AQQRIRHLATHDTLTGLLNRSALEDRLEHALALGRRNRSRVSVMFLDLDRFKNVNDTLGH 267 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--S 206 GD ++ ++ +L V RLGG+EF ++ A R++ E S Sbjct: 268 QFGDMLLREVAARLQACAREADTVARLGGDEFVVML-------ESLDAMGTRRVAERILS 320 Query: 207 QINIS---SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF-SD 260 I G +++ +S GI A R +P T++ +AD A+Y+AK+ GRN F SD Sbjct: 321 AIGAPFHIEGQELYLGVSIGIAVAPRDGDDP-HTLLRKADAAMYLAKERGRNNFQTFTSD 379 Query: 261 IENN 264 +++ Sbjct: 380 LDDR 383 >gi|104780809|ref|YP_607307.1| sensory box protein [Pseudomonas entomophila L48] gi|95109796|emb|CAK14501.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas entomophila L48] Length = 1124 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 21/211 (9%) Query: 64 ILVENLSLVIISI--TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118 IL +S+ IS+ T LLL S+LK + +I L+ D L+ L N + Sbjct: 648 ILTVEVSVEPISLNETDCLLLTARDVSLLKN---AQAQIRHLAYHDPLTNLPNRALLMDR 704 Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 I+ L +N + +++F D+D+FK IND+ GHPVGD V+ ++ +L V R Sbjct: 705 LSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVAR 764 Query: 175 LGGEEFAAAALGSS------EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-R 227 LGG+EF G E + LA+ LR+++ ++ G + +T S G+A Sbjct: 765 LGGDEFVVLLSGLEGSRELVESKVRELADTLRELL--AEPMSLDGQRLQVTPSIGVALIP 822 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 H + ++ RAD ALY AK SGRN F Sbjct: 823 DHGATPADLLKRADIALYRAKDSGRNTTQLF 853 >gi|71907676|ref|YP_285263.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71847297|gb|AAZ46793.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 827 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 60/198 (30%), Positives = 107/198 (54%), Gaps = 19/198 (9%) Query: 83 GYISGSILKELFISYNR-----ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130 G ++G+++ +S +R ++ L++ D L+GL N + L +N+++ Sbjct: 368 GQVAGAVIVFHDVSESRAMALKMAHLAQHDFLTGLPNRALLTERLSRAIGQARRHNKRVG 427 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++F D+DYFK IND+ GH VGD+++ ++++L+V V R GG+EF L EQ Sbjct: 428 MLFLDLDYFKHINDSLGHAVGDQLLQQVAERLIVCIRDTDTVCRQGGDEF-VILLAEIEQ 486 Query: 191 --EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247 +AA +A L + ++ + +G +H+++S GI+ T++ AD A+Y A Sbjct: 487 ARDAAPIAEKL--LAAFAEPCLIAGNELHVSLSIGISIYPDDGMDADTVMKNADTAMYHA 544 Query: 248 KKSGRNRVVCFSDIENNT 265 K +GRN F+ E NT Sbjct: 545 KANGRNNYQFFT-TEMNT 561 >gi|83309828|ref|YP_420092.1| signal transduction protein [Magnetospirillum magneticum AMB-1] gi|82944669|dbj|BAE49533.1| Predicted signal transduction protein [Magnetospirillum magneticum AMB-1] Length = 679 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 19/182 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +R+ LS D L+ L N F I + + D+D FK IND FGHP+ Sbjct: 260 HRLEDLSIRDPLTRLYNRRKFDEFLDHEIDRAQRHGHPFCVAQIDLDDFKNINDTFGHPI 319 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ L+ L V R+G +EFA ++ +E A LR+ + + Q+ + Sbjct: 320 GDLVLKELASVLYREVRRTDVVARVGADEFAVLLPETTMEEGVAAAEKLRQAVADCQLGL 379 Query: 211 SSGPSIHITISAGI------AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + IT S G+ A+ K I+ AD A+Y AK+SG+N+V + E+ Sbjct: 380 PVG-GVRITASIGLVGYPDNADDAQKLAIA-----ADVAIYKAKRSGKNQVAVIGEGEDA 433 Query: 265 TC 266 T Sbjct: 434 TV 435 >gi|28898029|ref|NP_797634.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|260878377|ref|ZP_05890732.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|260899030|ref|ZP_05907471.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|28806243|dbj|BAC59518.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|308088646|gb|EFO38341.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|308091088|gb|EFO40783.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] Length = 445 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 26/169 (15%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G +N A + L + LSI++ D+D FK+IND FGH +GD Sbjct: 275 AELAHRDALTGAMNRHAVQTWLEQQARQVRWGHSTLSILYMDLDNFKKINDKFGHQMGDD 334 Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 ++ + V+V + + R GGEEF ++ ++A A +RK N Sbjct: 335 ILR----EFVMVVASSIAPDDRLVRWGGEEFVVFCPDTNIEQAVKKAEMIRK-------N 383 Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ +H +T S G+A+ E ++ + RAD+ LY+AK++GRNRV Sbjct: 384 VANHLWVHGEALTCSIGVAQ-MQNERVTETMARADEVLYLAKRNGRNRV 431 >gi|85709010|ref|ZP_01040076.1| hypothetical protein NAP1_07205 [Erythrobacter sp. NAP1] gi|85690544|gb|EAQ30547.1| hypothetical protein NAP1_07205 [Erythrobacter sp. NAP1] Length = 631 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 95/171 (55%), Gaps = 12/171 (7%) Query: 98 NRISQLSRIDCLSGL-----LNHSAFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVG 151 +++ L+R D ++GL LNH+ + +G ++ +L++++ D+D FK++ND GHPVG Sbjct: 196 DKMQVLARTDVVTGLANRAGLNHAMVETMMGVNDDSRLALIWVDLDRFKEVNDLLGHPVG 255 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINI 210 D+V+ ++ +L V V R GG+EF S Q+A LA+++ +I+ +I+ Sbjct: 256 DRVLTGVAKRLKEVSPEGSTVARFGGDEFIIFCPIVSRQDAERLASEIHAEIMRPFRID- 314 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + + S G++ T++ AD ALY AK GR+R CF D Sbjct: 315 --GERLEVRASLGVSLLPENGNDADTLMQSADLALYHAKVGGRSR-TCFYD 362 >gi|324117112|gb|EGC11020.1| GGDEF domain-containing protein [Escherichia coli E1167] Length = 476 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 429 SIGAVVTQENTLNPNEIYRLADNALYEAKETGRNKVV 465 >gi|323938128|gb|EGB34390.1| GGDEF domain-containing protein [Escherichia coli E1520] Length = 473 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 429 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 465 >gi|291618989|ref|YP_003521731.1| YciR [Pantoea ananatis LMG 20103] gi|291154019|gb|ADD78603.1| YciR [Pantoea ananatis LMG 20103] Length = 770 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 10/179 (5%) Query: 87 GSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFK 140 G I++++ + Y R+ +L+ +D L+ L + SAF++ L E +++ D+D FK Sbjct: 287 GMIIRDVTLRYESEARLCELASLDMLTRLASRSAFMTQLSKLTESGVPYTLLMTDLDSFK 346 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND GH GD ++ +++Q+ V + RLGG+EF L EA +A L Sbjct: 347 DVNDTRGHAAGDALLCHVAEQIRAVCTQAIAAARLGGDEF-IVLLPCGSDEAMKIAQQLT 405 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I+ + S +I + S G+A H S+++ AD ALY AK SG+ + V F Sbjct: 406 AAIQTPFHYMDS--TIAVGASTGVASFPHHATDTSSVMSAADLALYRAKASGKGQSVLF 462 >gi|304315899|ref|YP_003851044.1| diguanylate cyclase with GAF sensor [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777401|gb|ADL67960.1| diguanylate cyclase with GAF sensor [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 554 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 3/133 (2%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S++ D+D FK IND +GH +GD V+ ++ ++ V R GGEEF+ + Sbjct: 422 VSLIMLDVDKFKNINDTYGHVIGDIVLCEIASRIKSCVRNNDIVARYGGEEFSVILPNLT 481 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247 ++A ++A +R + + I G I IT+SAG+A+ +K E +I AD+ALY Sbjct: 482 AEQACVIAERIRYEVSSKPIKTDVG-DITITVSAGVADYPNKAESAEKLISHADRALYAG 540 Query: 248 -KKSGRNRVVCFS 259 K GR+RV + Sbjct: 541 CKTKGRDRVAVYE 553 >gi|170760605|ref|YP_001785694.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch Maree] gi|169407594|gb|ACA56005.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch Maree] Length = 862 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 16/210 (7%) Query: 61 LEYILVENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAF 118 LE I +E L ++ S+ + Y + + + E +I L+ D L+GL N Sbjct: 397 LEEIYIEELRKWFSAVVYSMEVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKI 456 Query: 119 ISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 I ++ NE+ +++F D+D+FK IND GH VGD V+ +S + ++ +G Sbjct: 457 IETINKTISNYENERFAVLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIG 516 Query: 174 RLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 RLGG+EF ++ +E+ A + L I+ + ++ G SI I+I + Sbjct: 517 RLGGDEFIIVQNITSISDAEKLACKICTTLNHSIKYKKDDLFIGASIGISIYPEDGKDT- 575 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ST++ AD A+Y AKK+G + +S Sbjct: 576 ----STLMKNADAAMYAAKKNGGYKYEVYS 601 >gi|148976879|ref|ZP_01813534.1| hypothetical protein VSWAT3_10511 [Vibrionales bacterium SWAT-3] gi|145963753|gb|EDK29013.1| hypothetical protein VSWAT3_10511 [Vibrionales bacterium SWAT-3] Length = 469 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 17/172 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKV 154 +NR++ L+ D L+GLLN F + L + +E+ + + FDID FK +ND++GH +GD+V Sbjct: 297 HNRLNDLAMQDPLTGLLNRRGFEAQLLAQDEEPIIGVGVFDIDDFKVVNDHYGHKIGDEV 356 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I ++ + V R GGEEF A G S + + + ++ I +G Sbjct: 357 ICHVAQLMTNSVRQQDIVARFGGEEFVVAITGESSELLSSIFERIQNDISLQCYRTPTGD 416 Query: 215 SIHITISAG-----------IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++I++S G + + I + +D+ LY AK +G+N+V Sbjct: 417 KVNISVSGGATLYSLYKFDSVGHLWENQSIRS----SDEQLYKAKAAGKNQV 464 >gi|146306389|ref|YP_001186854.1| diguanylate cyclase [Pseudomonas mendocina ymp] gi|145574590|gb|ABP84122.1| diguanylate cyclase [Pseudomonas mendocina ymp] Length = 508 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 8/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 RI+ L+ D L+ L N F + + L V D+D FK +ND GH Sbjct: 341 RRIAALATTDSLTELPNRRGFDILAAQALQEAQRDSSPLCAVLLDLDNFKALNDAHGHLA 400 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ + QL + R GGEEF + A LA LR+ + + Sbjct: 401 GDDVLRRFARQLRGSLRQADILCRWGGEEFILLLKNTDRNAAHELAEKLRQQCAEQRYPV 460 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + G ++ +T+S G+++ E + ++ R D+ALY AK++GR+RV Sbjct: 461 A-GKALQVTVSLGLSQWQEGETLHDLLGRTDRALYRAKQAGRDRV 504 >gi|327398451|ref|YP_004339320.1| diguanylate cyclase [Hippea maritima DSM 10411] gi|327181080|gb|AEA33261.1| diguanylate cyclase [Hippea maritima DSM 10411] Length = 174 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 14/171 (8%) Query: 98 NRISQLSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 N+I QL D L+GL N Y+ LS++ DID+FK IND +G Sbjct: 5 NKIIQLHEEAVRDPLTGLFNRRYMNLLAEIEFKKTKRYSHPLSVLMIDIDHFKNINDKYG 64 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD V+ ++ ++ + R GGEEF ++++ A ILA +R I + Sbjct: 65 HKLGDLVLKHVAHEIKNHIRSSDIPIRYGGEEFVIILPNTTKESAFILAERIRNHIAATP 124 Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I + G I T+S G + E C E ++ +D+ +Y+AK+SGRNR + Sbjct: 125 IFV-DGMEIRCTVSIGASSMEDC-PETFEELVNNSDKKMYLAKQSGRNRTI 173 >gi|304397592|ref|ZP_07379469.1| diguanylate cyclase/phosphodiesterase [Pantoea sp. aB] gi|304354764|gb|EFM19134.1| diguanylate cyclase/phosphodiesterase [Pantoea sp. aB] Length = 518 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 25/241 (10%) Query: 39 IATVIFIANIFLF--------YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL 90 IAT+I ++ ++ F +GL Y + + E L ++ S + ++L + ++ Sbjct: 13 IATIILLSTLWEFGLEARICRLLGLG--YDTSFEISERLRFILTSSSFAVLAMVVPALLI 70 Query: 91 KELFISYNRISQ----LSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIN 143 L R + L+ D L+G++N +F I+SL + ++ ++++FK IN Sbjct: 71 AGLIRKTRRAEKNALRLAGTDELTGVMNRRSFNAHIASLKACGAAYTLTLLNVNHFKSIN 130 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD + L+D L G+ V R+GG+EFA A S ++A A L + Sbjct: 131 DLNGHRQGDATLIALADLLTASAGSTSKVFRVGGDEFAIVAEDSQAEQAQTFAESLCE-- 188 Query: 204 ENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS-DI 261 +I +GP +++SAGIA C + + ++ AD ALY AK+ + + FS D+ Sbjct: 189 --QAASIRTGPHTFLSLSAGIASSACTGQ--ADVMRAADLALYEAKQDKCSHLARFSPDM 244 Query: 262 E 262 E Sbjct: 245 E 245 >gi|323528088|ref|YP_004230240.1| PAS/PAC sensor-containing diguanylate cyclase [Burkholderia sp. CCGE1001] gi|323385090|gb|ADX57180.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1001] Length = 522 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFG 147 S ++ L+R D L+GL N L K ++++ D+D FKQ ND G Sbjct: 334 SEAKVLYLARHDSLTGLANRRELRERLERILLKAHAVSGMRTAVLYLDLDGFKQANDRHG 393 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+ ++ +L F RLGG+EFA ++ +A + + I Sbjct: 394 HTAGDEVLETVAARLRQTLRHGEFAARLGGDEFAVIVEQATLHSIVAMAQHVIREIAKPY 453 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + +++G SI I S GIA EP+ +I RAD+A+Y AK +G+ Sbjct: 454 V-LATGGSISIGTSIGIALAEAHEPVDDLIRRADEAMYSAKNAGKG 498 >gi|256023272|ref|ZP_05437137.1| putative diguanylate cyclase [Escherichia sp. 4_1_40B] Length = 452 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441 >gi|332143206|ref|YP_004428944.1| diguanylate cyclase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553228|gb|AEA99946.1| diguanylate cyclase [Alteromonas macleodii str. 'Deep ecotype'] Length = 142 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 1/141 (0%) Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 ++ L + K ++ DID FK IND +GH VGD + + F + +GRLGGE Sbjct: 1 MNELPHKSNKCAVAMLDIDLFKTINDKYGHCVGDDALKLFAATAKQNFSASVDMGRLGGE 60 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EF G E + ++++ I + G I +T SAG+ + IS+++ Sbjct: 61 EFLFIFQGVDVSETVKQLETFSQSLKDASIK-ALGGEIKLTFSAGVLLLTEAQSISSVLE 119 Query: 239 RADQALYVAKKSGRNRVVCFS 259 + D ALY AK++GR+++V F+ Sbjct: 120 KTDGALYEAKETGRDKIVVFT 140 >gi|152999355|ref|YP_001365036.1| diguanylate cyclase [Shewanella baltica OS185] gi|151363973|gb|ABS06973.1| diguanylate cyclase [Shewanella baltica OS185] Length = 507 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 13/176 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139 ++ K+L S + LS D L+ L N F + L NE+ + +V DIDYF Sbjct: 333 TLRKQLEASNAELEFLSTHDPLTKLYNRHYF-NRLFINNEQHDKSAKAGMCLVMIDIDYF 391 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND GH VGD+++ +S L V R GGEEF SS L + Sbjct: 392 KEINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQHSSLPLVESLCVRI 451 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I++ Q ++ +T S G+A+ EP+ RAD+ALY AK GRN++ Sbjct: 452 AERIKHYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQM 503 >gi|84515732|ref|ZP_01003093.1| GGDEF domain protein [Loktanella vestfoldensis SKA53] gi|84510174|gb|EAQ06630.1| GGDEF domain protein [Loktanella vestfoldensis SKA53] Length = 249 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 9/163 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKLSIVF-FDIDYFKQINDNFGHPVGDKV 154 R+S +SR D L+G+ N F ++S S K I+ D D+FKQIND +GH GD Sbjct: 77 RRLSFMSRKDWLTGMNNRRTFFDLASTRSQQCKTGILLMLDADHFKQINDTYGHQAGDIC 136 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +S L GR+GGEEFA + A +++ K I GP Sbjct: 137 LKAISYMLSRNLRVGDVSGRIGGEEFAILLADAKPDHARVISERPTK-----PIPFRVGP 191 Query: 215 S-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + IT+S G + P+ + AD+ALY AK GR RVV Sbjct: 192 AHLTITLSIGAVITSPETPLEVSLSLADKALYQAKSEGRARVV 234 >gi|120556162|ref|YP_960513.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8] gi|120326011|gb|ABM20326.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8] Length = 774 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 27/196 (13%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLS-IVFFDIDYFK 140 +++ L + R S+ + ID LSGL N F+ S KLS ++F D+D FK Sbjct: 328 QLIERLETEHARSSRAASIDHLSGLFNRRQFLDVADSLVLEQRRQRKLSTMLFIDLDRFK 387 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAIL 195 IND+ GH +GD ++ ++ ++ + G R GG+EF G EQ AA L Sbjct: 388 SINDSLGHHIGDLLLQAVAGRIQRMLGKGDIAARFGGDEFVVLLAGDRSEADIEQWAAAL 447 Query: 196 ANDLRK--IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 L ++E +++N S PSI I IS + I + AD A+Y AKK+GR Sbjct: 448 TAHLSAPYMLEGTELNTS--PSIGIAISP-----RDGQSIDELTKCADAAMYSAKKAGRG 500 Query: 254 RVVCF------SDIEN 263 + F SD+E Sbjct: 501 QYRFFDQSLNVSDVEE 516 >gi|15641229|ref|NP_230861.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121730346|ref|ZP_01682706.1| GGDEF family protein [Vibrio cholerae V52] gi|147674755|ref|YP_001216786.1| GGDEF family protein [Vibrio cholerae O395] gi|153801903|ref|ZP_01956489.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|229505191|ref|ZP_04394701.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229511139|ref|ZP_04400618.1| GGDEF family protein [Vibrio cholerae B33] gi|229518258|ref|ZP_04407702.1| GGDEF family protein [Vibrio cholerae RC9] gi|229529695|ref|ZP_04419085.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|229608210|ref|YP_002878858.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254848341|ref|ZP_05237691.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255745620|ref|ZP_05419568.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262159105|ref|ZP_06030217.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|262169463|ref|ZP_06037155.1| GGDEF family protein [Vibrio cholerae RC27] gi|298498684|ref|ZP_07008491.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|9655696|gb|AAF94375.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121627904|gb|EAX60483.1| GGDEF family protein [Vibrio cholerae V52] gi|124122548|gb|EAY41291.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|146316638|gb|ABQ21177.1| GGDEF family protein [Vibrio cholerae O395] gi|227013133|gb|ACP09343.1| GGDEF family protein [Vibrio cholerae O395] gi|229333469|gb|EEN98955.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|229344973|gb|EEO09947.1| GGDEF family protein [Vibrio cholerae RC9] gi|229351104|gb|EEO16045.1| GGDEF family protein [Vibrio cholerae B33] gi|229357414|gb|EEO22331.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229370865|gb|ACQ61288.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254844046|gb|EET22460.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255736695|gb|EET92092.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262022276|gb|EEY40985.1| GGDEF family protein [Vibrio cholerae RC27] gi|262029290|gb|EEY47942.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|297543017|gb|EFH79067.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 372 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++L+ ++ LS D L+GL N + L + V DID FK +N Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH VGDKV+ +++ L F + V RLGG+EF ++ +A + + I Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 312 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I++ + ++S G+A + H E ++ ADQA+Y+AK SG+NRV F Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368 >gi|323499464|ref|ZP_08104435.1| GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326] gi|323315451|gb|EGA68491.1| GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326] Length = 323 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 104/214 (48%), Gaps = 26/214 (12%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELF-----ISYNRISQLSRIDCLSGLLNHSAF 118 + +EN +LV ++ ++ +L Y+ + ++ + ++ L+ D L+G N + Sbjct: 116 VAIENSALVRSAVYLNFVLAYVFVWTISHVYEDSRVKGVDSLNTLAHQDALTGAQNRLSL 175 Query: 119 ISSLGSYNEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 +++ E L F DID FK IND++GH GD V+ + ++L V G + R+ Sbjct: 176 VTTFEQRAELLEGCFLLTLDIDDFKSINDSYGHAAGDVVLKQVVERLATVAG-QQHIYRM 234 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------SIHITISAGIAERCH 229 GGEEF +S Q+ I + ++ Q ++ P + +T SAG+ + Sbjct: 235 GGEEFVIVLPNTSSQQTGI-----SRWVKQLQASVMGKPMCFQGSELEVTFSAGVEQFSQ 289 Query: 230 KEPISTIIYRADQALYVAKKSGRN------RVVC 257 + + + AD+ LY+AKKSG+ +V+C Sbjct: 290 AKGLDKTLSLADKDLYLAKKSGKRSTFYQGKVLC 323 >gi|182680837|ref|YP_001828997.1| diguanylate cyclase [Xylella fastidiosa M23] gi|182630947|gb|ACB91723.1| periplasmic/7TM domain sensor diguanylate cyclase [Xylella fastidiosa M23] gi|307579304|gb|ADN63273.1| diguanylate cyclase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 554 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 20/163 (12%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G L A I LS+ F DID+FK+IND +GH GD + + Sbjct: 395 VDGLTGALTRVAIERRLERDIDDARQMGTPLSVAFIDIDHFKRINDEYGHAAGDACLRQV 454 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214 ++ +GR GG+E A G+ A R++ E ++ +SS P Sbjct: 455 VQRVRGWLRASDALGRHGGDELIAILPGADLVAA-------RRVAEGIRVAVSSQPFQFE 507 Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T+S G+A E I ++ RAD LY +K +GR+RV Sbjct: 508 CTRLRCTLSLGVASWLPDESIEALLQRADNGLYASKAAGRDRV 550 >gi|160874516|ref|YP_001553832.1| diguanylate cyclase [Shewanella baltica OS195] gi|160860038|gb|ABX48572.1| diguanylate cyclase [Shewanella baltica OS195] gi|315266755|gb|ADT93608.1| diguanylate cyclase [Shewanella baltica OS678] Length = 518 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + + L + DID+FK IND+FGH GDK Sbjct: 354 QKLNLLDSLTQLPNRAALEERMDLEYRNYQRHKSPLWVAVADIDHFKTINDSFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF + + A L N +R+ ++N + Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLLPDVAPADIAQLLNRVREKVKNIPFKFKNQ 473 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A+ E I RAD ALY AK R+RVV Sbjct: 474 -RITVTVSIGAAQVMGSELIHETFERADAALYKAKHESRDRVV 515 >gi|77458524|ref|YP_348029.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gi|77382527|gb|ABA74040.1| putative GGDEF domain protein [Pseudomonas fluorescens Pf0-1] Length = 533 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 11/178 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 ++ +E+ ++ + ++ D L+GL N ++L LS++ D+DYFK Sbjct: 335 AMEREIRSAHKTMRDMALTDSLTGLGNRRRLDAALADEIRLARRQGSPLSLIMLDVDYFK 394 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199 + ND +GH GD + + D + P + R GGEEF + A +A D+ Sbjct: 395 RYNDQYGHAAGDDCLIAVGDGIRKAVKRPSDLAVRYGGEEFTVLLPNTDSAGAIQVAEDI 454 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNR 254 + I + ++ + P ++T SAGI R + +T++ AD LY AK+ GRNR Sbjct: 455 LQTIRSLELEHAGHPLGYVTASAGITTRYPVDDAVTPATLLKAADTCLYQAKQQGRNR 512 >gi|70733694|ref|YP_257334.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens Pf-5] gi|68347993|gb|AAY95599.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas fluorescens Pf-5] Length = 330 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK IND +GHP GD V+ +++ GR+GGEEFAA G + Sbjct: 201 LAFLLLDIDDFKVINDTYGHPEGDIVLQRIAESGRAALRRGDLFGRIGGEEFAAVFPGCT 260 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 A +A L++ I+ + G + IT+S G+ E + + RAD A+Y A Sbjct: 261 ADMARQVAERLQREIQRQNFS-HQGQTFTITVSQGLTGLLAEDESLDNLFARADSAMYEA 319 Query: 248 KKSGRNRVV 256 K+ G+NR++ Sbjct: 320 KRQGKNRII 328 >gi|16128989|ref|NP_415544.1| diguanylate cyclase [Escherichia coli str. K-12 substr. MG1655] gi|238900284|ref|YP_002926080.1| putative diguanylate cyclase [Escherichia coli BW2952] gi|301646744|ref|ZP_07246602.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] gi|2495590|sp|P75908|YCDT_ECOLI RecName: Full=Probable diguanylate cyclase YcdT; Short=DGC gi|1787262|gb|AAC74110.1| diguanylate cyclase [Escherichia coli str. K-12 substr. MG1655] gi|238862238|gb|ACR64236.1| predicted diguanylate cyclase [Escherichia coli BW2952] gi|260449831|gb|ACX40253.1| diguanylate cyclase [Escherichia coli DH1] gi|301075070|gb|EFK89876.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] Length = 452 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441 >gi|152964339|ref|YP_001360123.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans SRS30216] gi|151358856|gb|ABS01859.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans SRS30216] Length = 600 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 33/252 (13%) Query: 26 TFMIYFSIFFSIFIATVIFIANIFLFYI--GLTPFYGLEYILVENLSLVIISITIS---L 80 TFM+ + S A + +A +F F L F E +L L L +++ +++ + Sbjct: 88 TFMLGAGVVLSADDAAALGVAGVFAFCAVDNLYFFARREAVLHTALLLAVVAGSLAWRGI 147 Query: 81 LLGYISGSILKE--LFISYNRISQLS---RIDCLSGLLNHSAF-------ISSLGSYNEK 128 G ++ +L + L + R+ Q + D L+ LLN F +++ Sbjct: 148 DPGVVAALMLVQVALVVVIGRLVQRAAHGTRDSLTELLNRRGFDERFEEAVAAAHRGGSD 207 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG----TPMFVGRLGGEEFAAAA 184 LS+ D+D+FK +ND+ GH GD ++ L++ L + + R GG+EFA Sbjct: 208 LSVALLDLDHFKDVNDSGGHAAGDALLVSLAETLNRTLAGCAPSSTVLARQGGDEFAVVT 267 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 G A +A LR+ ++ P+ +S G+A+ +E ++ RAD AL Sbjct: 268 PGLDLDAAVAVAEALRR---------AAAPT---GLSVGVAQLAPREDAGALLRRADTAL 315 Query: 245 YVAKKSGRNRVV 256 Y AK +GR+RV Sbjct: 316 YEAKAAGRSRVA 327 >gi|332304717|ref|YP_004432568.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172046|gb|AEE21300.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Glaciecola agarilytica 4H-3-7+YE-5] Length = 960 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 17/193 (8%) Query: 85 ISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134 I GSIL K+ N I ++ D L+G F I+ ++L+++ Sbjct: 505 IYGSILDISKQKAADQN-IEYMASHDTLTGFYQRQEFEKRLHAAINQAKQEQDELTLLHV 563 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 +ID FK IND +GH GD ++ S ++ + +GRLGG+EF GS+ Q + + Sbjct: 564 NIDQFKAINDTYGHKAGDAILRQFSQLMLKIVTVDNMIGRLGGDEFGILLTGSNAQNSFM 623 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSG 251 LAN L ++N S ++I I + E +++ ++ AD A Y+AK G Sbjct: 624 LANKLLNTVQNYDF---SWEERRLSIGISIGQVSWNEKVTSSEQLLSMADSACYMAKTLG 680 Query: 252 RNRVVCFSDIENN 264 RNR+ +S + Sbjct: 681 RNRLHTYSSTDKQ 693 >gi|328949307|ref|YP_004366644.1| diguanylate cyclase/phosphodiesterase [Treponema succinifaciens DSM 2489] gi|328449631|gb|AEB15347.1| diguanylate cyclase/phosphodiesterase [Treponema succinifaciens DSM 2489] Length = 821 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 9/193 (4%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEK 128 + I++++ L++ + S EL S ++ + D L+ L N A + + + Sbjct: 372 IFIAVSLILIISQVKDSY--ELRRSNLKMEYMLGHDSLTDLPNRFKTQAVFNDIQKSGKN 429 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGS 187 S+V FDID FK IND + H GD V+ ++ +L G +FV R GG+EF L Sbjct: 430 FSLVLFDIDDFKNINDFYSHACGDIVLKTIASRLKSYSAGKDIFVSRFGGDEFLVLYLEK 489 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 E +I ++LR I++ S IN + +IHI S GI + + + +I AD ALY A Sbjct: 490 QLNEDSIEIHELRAILK-SPINYAES-NIHIQSSLGIVN-SNDDEMEKMIQNADIALYRA 546 Query: 248 KKSGRNRVVCFSD 260 K SG+N+ V F++ Sbjct: 547 KNSGKNKSVFFNE 559 >gi|163743988|ref|ZP_02151357.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10] gi|161382748|gb|EDQ07148.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10] Length = 511 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 8/167 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + + S D L+G+ N F+ L +L ++ FD D FK ND GH Sbjct: 328 DELHDQSTRDPLTGVYNRRYFLGELRNAVALADRRASQLGVLSFDADRFKTFNDTHGHDA 387 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ + D L +F R+GGEEFA + +++ + LR IE+ + Sbjct: 388 GDMVLRAIGDTLKELFHNGEVCCRMGGEEFAVFLPDTDKEQTIEVGEALRAAIEDITLRY 447 Query: 211 SSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256 SG +TIS G+A + +++ AD+ALY AK +GRN VV Sbjct: 448 GSGTLPRVTISIGVASYPEDGLLPQDLMHAADRALYAAKDAGRNCVV 494 >gi|297578786|ref|ZP_06940714.1| GGDEF family protein [Vibrio cholerae RC385] gi|297536380|gb|EFH75213.1| GGDEF family protein [Vibrio cholerae RC385] Length = 443 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L +S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203 + SD+LV R GGEEF ++ ++A LA LR KI Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S I+ + IT S GIA+ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 382 DHSWIHGGA-----ITCSLGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427 >gi|313498336|gb|ADR59702.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas putida BIRD-1] Length = 699 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 89/181 (49%), Gaps = 14/181 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIND 144 E ++ +I ++ D L+GL N + F L GS N KL+ D+D FK IND Sbjct: 264 EELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSENAKLTAALCLDLDNFKNIND 323 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKII 203 + GH GDK++ L +L + RLGG+EFA G ++AA A L K I Sbjct: 324 SLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGLEGRDAACNTAQRLIKAI 383 Query: 204 ENS-QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 QI G + +S GIA + ++ AD ALY AK++GRNR CF D+ Sbjct: 384 SPPFQIE---GHQFVVGVSIGIAIAPDDNDQAEQLLGYADMALYQAKRNGRNRYECF-DV 439 Query: 262 E 262 E Sbjct: 440 E 440 >gi|268680322|ref|YP_003304753.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268618353|gb|ACZ12718.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 405 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 19/173 (10%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +++ ID L+G+ + A + I DID+FK+ ND FGH +GD V+ ++ + Sbjct: 234 KMAYIDTLTGIPSRRALEERFLRLGSRYVIAMVDIDFFKKFNDTFGHDIGDDVLKLVAKE 293 Query: 162 L-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-------------ENSQ 207 L V G F R GGEEF G ++E + ++R+ I S Sbjct: 294 LNHVKNGGKAF--RYGGEEFTILFSGKKKEECIMALEEVREAIFRRGFVIRDKNRPAKSS 351 Query: 208 INISSGPSI---HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + PS +++S G+A + II +AD ALY AK+SGRN ++C Sbjct: 352 KATKTNPSPKKERLSVSIGVALSQKGKTPQEIIKKADDALYKAKESGRNCLIC 404 >gi|220934896|ref|YP_002513795.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] gi|219996206|gb|ACL72808.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] Length = 778 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 13/170 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 SI +L +YNR+ L +L ++ Y +S+V FD+D FK++ND G Sbjct: 621 SITDKLTGAYNRLK-------LDEVLQQQHALAE--RYKRPVSVVMFDLDDFKRVNDTHG 671 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD ++ ++ ++ + GR GGEEF ++ +AA LAN +R ++ ++ Sbjct: 672 HHAGDLILRRFTELVLSLARKSDVFGRWGGEEFLLICPETTALDAADLANRVR--VQLAE 729 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + T+S+GIAE + ++ I AD+ LY AK+ GRNRVV Sbjct: 730 IVFEEVGT--QTVSSGIAELRPSQSVNDWISHADKRLYQAKQQGRNRVVS 777 >gi|167622217|ref|YP_001672511.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167352239|gb|ABZ74852.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 392 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 53 IGLTPFYGL-EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111 I LT F L + L + + L I+ +S+L + + LF Y+ L+ D L+G Sbjct: 181 IALTQFIWLFHHYLPKEMPLAIL---LSML---ATAYLFSMLFALYD----LAYKDELTG 230 Query: 112 LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 L + A + S N S+ DID+FK+ ND +GH VGD+V+ ++ +L V G Sbjct: 231 LSSRRALNTMALSLNNHYSLAMIDIDHFKKFNDTYGHDVGDQVLRLVAKKLSKVKGGGQ- 289 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----------------SSGP 214 V R GGEEF + + +LR I + I + + Sbjct: 290 VFRYGGEEFTIVFENKNIERVLPHLEELRHKISHYDIVLREQGRKSRSKLDRNSKHKANQ 349 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ITIS G+AE+ + + RAD+ALY AK +GRN V Sbjct: 350 ALNITISIGVAEQHGETTFEKTLKRADEALYKAKNNGRNCV 390 >gi|153829619|ref|ZP_01982286.1| GGDEF family protein [Vibrio cholerae 623-39] gi|148874895|gb|EDL73030.1| GGDEF family protein [Vibrio cholerae 623-39] Length = 443 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 34/172 (19%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L +S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203 + SD+LV R GGEEF ++ ++A LA LR KI Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S I+ + IT S GIA+ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 382 DHSWIHGGA-----ITCSIGIAQ-MGDERITETVSRADEALYRAKRLGRNRI 427 >gi|160899486|ref|YP_001565068.1| diguanylate cyclase [Delftia acidovorans SPH-1] gi|160365070|gb|ABX36683.1| diguanylate cyclase [Delftia acidovorans SPH-1] Length = 416 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 92/198 (46%), Gaps = 24/198 (12%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS- 124 +E+L L++ T L +EL + ++S D L+G LN A L S Sbjct: 225 IEHLDLLVAQRTAQL----------EELV---EEVKRMSLTDALTGCLNRRAMDERLASE 271 Query: 125 ------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRL 175 LS++F D+D FKQ+ND GH GD V +A + + ++ R Sbjct: 272 VAQGQRLGAALSVMFVDVDRFKQVNDRHGHAAGDAVLREVALRCRHALEREPSAQWMARY 331 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 GGEEF G + +A LA LR+ I ++ I + G + T S G+A+ E Sbjct: 332 GGEEFLIVMPGVAAAQAWALAGQLREAIRSTPIQV-HGLELAATASFGVAQLQGAESAQE 390 Query: 236 IIYRADQALYVAKKSGRN 253 ++ RAD LY AK +GR+ Sbjct: 391 LLQRADAMLYEAKHAGRD 408 >gi|241203375|ref|YP_002974471.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857265|gb|ACS54932.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1059 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 84/179 (46%), Gaps = 16/179 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144 EL + NRI S D L+ L N +L S +K SI+ D+D FK IND Sbjct: 620 ELELVKNRIEHNSLHDPLTALANRRKLDIALESLTHDGRQQRQKFSILHIDLDRFKDIND 679 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN----DLR 200 GH GD ++ S L V R+GG+EF AL ++E A L+ ++R Sbjct: 680 TLGHAAGDAMLVHASKVLAKNVRGSDIVARIGGDEFVILALDVGDKEMAQLSTRIIEEMR 739 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + I+ + G SI I ++ GI K ++ AD ALY AK +GRNR F+ Sbjct: 740 QPIDFQGFSCRCGVSIGIALANGIHVDARK-----VLINADIALYRAKSTGRNRFEFFN 793 >gi|126640617|ref|YP_001083601.1| hypothetical protein A1S_0546 [Acinetobacter baumannii ATCC 17978] Length = 657 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + ++ LS D L+ L N +S ++K++ ++ D+D FK +ND Sbjct: 219 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 278 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH +GD+++ ++++L + R+GG+EF A + +EA LA + +I+ Sbjct: 279 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLHLIQ 338 Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S QI SG I+I+ S GIA H + + ++ AD A+ ++K+ GRN FS Sbjct: 339 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 392 >gi|77918682|ref|YP_356497.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380] gi|77544765|gb|ABA88327.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380] Length = 808 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 21/176 (11%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+GL N + + L L++++ D+D FK+IND +GH G Sbjct: 600 QVRQLAFYDALTGLPNRTLLANRLDQSLAQAQRDGRMLALLYLDLDRFKEINDTYGHAAG 659 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI------IE 204 D V+ + +L V RLGG+EF G + + +A + K+ +E Sbjct: 660 DMVLQAAAQRLNSCIRRNDTVARLGGDEFVVLLPGLENVDQPTTVAEKILKVMKVPFQVE 719 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + Q+N++ PSI + + H + + ++ RAD A+Y AK GRN CFS+ Sbjct: 720 SQQLNVT--PSIGMVLYPE-----HGQELGVLLKRADIAMYAAKSRGRNGYACFSE 768 >gi|313682781|ref|YP_004060519.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM 16994] gi|313155641|gb|ADR34319.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM 16994] Length = 772 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 11/174 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDN 145 L + N++ +L+ ID L+ + N F SY E L+I+ D+D+FK+ NDN Sbjct: 596 LKLKNNQLKELAMIDGLTQIANRRFFDQMYEKSYKEVLRDHKTLAILMIDVDHFKRYNDN 655 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD + ++ L P + R GGEEF + A ++ L K +E Sbjct: 656 YGHAKGDACLIAIAKVLKKSLKRPSDVIARYGGEEFVVLLKSIDFEGAKQVSLSLVKAVE 715 Query: 205 NSQINIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 +I+ S + HITIS G+A + +E I+ +++ +AD ALY AK GRNRV Sbjct: 716 GLKISHEYSSAADHITISIGMAFKEAEEEITKESLLKKADDALYEAKAGGRNRV 769 >gi|114705020|ref|ZP_01437928.1| hypothetical protein FP2506_08786 [Fulvimarina pelagi HTCC2506] gi|114539805|gb|EAU42925.1| hypothetical protein FP2506_08786 [Fulvimarina pelagi HTCC2506] Length = 252 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 14/227 (6%) Query: 42 VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG--YISGSILKELFISYNR 99 V+ A F +G F+ ++ +++ ++ +SL++G +I +++ + R Sbjct: 2 VLICATAFFSGLGAAVFFA-DFPSAAFSRVLVFAVLLSLVVGALHIGHILIRTTILDTQR 60 Query: 100 ISQLSRI--DCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHP 149 +R D L+GLLN F + + + ++ D D+FK+IND FGHP Sbjct: 61 RGWKNRAMRDRLTGLLNRQGFRDAWNTKTMAMREDGRTGSMLLIIDADHFKRINDRFGHP 120 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD+ + ++ GRLGGEEF A G ++ + ++A +R + + Sbjct: 121 IGDQALKAIARTTAGSLRGDDICGRLGGEEFIVAVHGLTQNQGYVIAERIRSAVSRLTVG 180 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++G +T+S G A + AD+ Y +K+ GRNRV Sbjct: 181 -ANGHEARLTVSIGGAFSGGGAGFDALYKAADENCYRSKRGGRNRVT 226 >gi|89107874|ref|AP_001654.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr. W3110] gi|85674818|dbj|BAA35810.2| predicted diguanylate cyclase [Escherichia coli str. K12 substr. W3110] Length = 452 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441 >gi|74316505|ref|YP_314245.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259] gi|74056000|gb|AAZ96440.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus denitrificans ATCC 25259] Length = 363 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 17/244 (6%) Query: 27 FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86 F + + ++F T + + Y P + +L L++ I + SL+ GY Sbjct: 113 FGVKWMALSALFATTGLIAVGLLSDYWTQHPIWIFSLLL---LNVAIPAYVASLIRGYHE 169 Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYF 139 +L + +++ D L+GL N +AF S L S+ ++ +++++FD+D F Sbjct: 170 SR--AQLARYAGEMEEIALTDTLTGLPNRAAFFSQLQKAVSHAQRTQSSIALLYFDLDGF 227 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 KQ+ND+ GH GD ++ + ++ + RLGG+EF L + ++E + Sbjct: 228 KQVNDSLGHAHGDSLLKQTALRVGQCLRGEDVLARLGGDEF-VVLLNAQDKEKRVEKVAA 286 Query: 200 RKIIENSQINISSGPSIHITISAGI--AERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 R + + I+ G + +T SAGI H + + +I+ AD+ +Y AKK G+N+ Sbjct: 287 RILQAVASIDQVDGHRVEVTASAGIVLVSGAHAAALGSEGMIHEADKNMYAAKKKGKNQT 346 Query: 256 VCFS 259 V S Sbjct: 347 VLSS 350 >gi|86609610|ref|YP_478372.1| sensory box protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558152|gb|ABD03109.1| sensory box protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 671 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 13/156 (8%) Query: 107 DCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL+N +F L Y+E L++ F D+D+FK IND FGH VGD ++ ++++ Sbjct: 500 DALTGLVNRESFRERLQQTLQQYYSECLALFFVDLDHFKDINDTFGHSVGDALLQGVAER 559 Query: 162 LVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHI 218 L V R GG+EF +GSS + A ++I++ Q S G S+ + Sbjct: 560 LTKCVRPGDIVARWGGDEFTLLLPRIGSS----TVAARLAQRIVDVFQTPFSCEGHSLSV 615 Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253 T S G+A +ST+++ AD ALY K++GR+ Sbjct: 616 TCSIGVALYPQDGVEVSTLLHHADLALYQVKENGRS 651 >gi|84623096|ref|YP_450468.1| hypothetical protein XOO_1439 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367036|dbj|BAE68194.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 798 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 9/164 (5%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL+N L S ++ F D+DYFK +ND FGH VGDK + + Sbjct: 370 DALTGLINRHEIERRLQLLIELPRSPQMCHALCFVDMDYFKLVNDTFGHAVGDKFLCHFA 429 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D + + ++GRLGG+EFA + +A L + ++ + G + + Sbjct: 430 DVITMQLRPGDWLGRLGGDEFAILLANTDLPQARALLEGMHAVL-GQPWSHQGGRPLTPS 488 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 S G+ E R +++++ AD A + AK+ GRNR+ CF++ + Sbjct: 489 CSFGVVEIRQSASDVNSLMTAADLACHAAKEEGRNRIRCFNETD 532 >gi|85711302|ref|ZP_01042361.1| putative diguanylate cyclase (GGDEF) [Idiomarina baltica OS145] gi|85694803|gb|EAQ32742.1| putative diguanylate cyclase (GGDEF) [Idiomarina baltica OS145] Length = 468 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 121/257 (47%), Gaps = 29/257 (11%) Query: 15 HEKNLESFSPHTFMIYFSIFFSIFIATV------IFIANIFLFYIG--LTPFYGLEYILV 66 H + +E+ +F ++F I ++IAT +FI IF + ++ + +++ LV Sbjct: 222 HSQRIEA----SFTVFFIILPFLWIATTTSQLTTVFILAIFSTVLAFLVSQLHVIDFALV 277 Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---- 122 +++ + + L + L +++Q D L+ + FI L Sbjct: 278 YQFAMITTAGCVWFAL------TIPTLMTQNAQLAQRVARDGLTKAASRGHFIQRLEAEL 331 Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + N +V FD D+FKQIND GH +GD+V+ +++ + + +GR GG+EF Sbjct: 332 QRSTPNSTCCLVIFDFDFFKQINDRHGHILGDRVLVSVTNYVSQLLRENDIMGRFGGDEF 391 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYR 239 + EA ++A L I I+ P +T S G+ E CH E + I R Sbjct: 392 MLMFPATEFSEAQVIAKRLCTGISQLTIDGLDEP---VTCSFGVVE-CHPSEHAVSAIDR 447 Query: 240 ADQALYVAKKSGRNRVV 256 AD+AL +AK+ GR +VV Sbjct: 448 ADRALLLAKQRGRRQVV 464 >gi|325122120|gb|ADY81643.1| putative two-component response regulator with GGDEF domain [Acinetobacter calcoaceticus PHEA-2] Length = 404 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 11/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL ++S LS+ D L+GL N +L + + L+I+ DIDYFK ND Sbjct: 217 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDYFKAYND 276 Query: 145 NFGHPVGDKVIA-FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH GD+ + + + V R GGEEF ++ Q+A I L I Sbjct: 277 TLGHLKGDECLKEIAIAISSIAARSGDLVARYGGEEFLLLFPMTNSQQALIQVERLMNAI 336 Query: 204 ENSQI-NISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254 I + S S H+TIS G+A + + IS + RAD ALY AK +GRN+ Sbjct: 337 NKIAIKHPCSDVSPHVTISVGVATTIPRLNDSISAFVARADHALYKAKTNGRNQ 390 >gi|323492042|ref|ZP_08097207.1| c-di-GMP phosphodiesterase A-related protein [Vibrio brasiliensis LMG 20546] gi|323313771|gb|EGA66870.1| c-di-GMP phosphodiesterase A-related protein [Vibrio brasiliensis LMG 20546] Length = 683 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 14/171 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +++QL+ D L+GL N S + LG + N+ ++ + D+D FK IND+ GH +G Sbjct: 237 KLNQLAYYDSLTGLANRSLLLQLLGKSIDDANTSNQAGALFYLDLDRFKTINDSLGHTIG 296 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D +I +S ++ + R+GG+EFA +S ++A LA L ++ N +I Sbjct: 297 DNLIKAISKRIEAWLKSDFTAARIGGDEFALLLPNTSTEKAHELAQQLLALVSNP-YSID 355 Query: 212 SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259 ++ T+S GIA ST ++ +AD ALY AK +GRN+ + + Sbjct: 356 DH-QLYCTVSVGIA--VFPSVGSTNIDVLRQADTALYRAKVAGRNKYMFYE 403 >gi|297530793|ref|YP_003672068.1| response regulator receiver modulated diguanylate cyclase [Geobacillus sp. C56-T3] gi|297254045|gb|ADI27491.1| response regulator receiver modulated diguanylate cyclase [Geobacillus sp. C56-T3] Length = 542 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 26/191 (13%) Query: 85 ISGSILKELFISYNRISQLSR-------IDCLSGLLN-------HSAFISSLGSYNEKLS 130 I+ ELF+ R+ + R ID L+G+ N ++ S L Y Sbjct: 205 ITTPAADELFVRVRRLIEKKRKIDDLVLIDELTGVYNRKYLPRVYARLRSDLERYGAPSC 264 Query: 131 IVFFDIDYFKQINDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + D+D+FKQ+ND FGH GD K+ AFL G V RLGGEEF Sbjct: 265 LALLDLDHFKQVNDRFGHLAGDAVLQKLAAFLRQH---TRGVDTVV-RLGGEEFVVWLAK 320 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQAL 244 +S+ EA + L++ ++ + G + T SAG+ E C + P+ + AD+AL Sbjct: 321 TSKSEARAVLERLQRQFAAEKVE-ADGALLSCTFSAGLVE-CDEPDRPLDYWLRLADKAL 378 Query: 245 YVAKKSGRNRV 255 Y AK+ G NR+ Sbjct: 379 YAAKRGGGNRI 389 >gi|184156874|ref|YP_001845213.1| EAL domain-containing protein [Acinetobacter baumannii ACICU] gi|183208468|gb|ACC55866.1| EAL domain protein [Acinetobacter baumannii ACICU] Length = 684 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + ++ LS D L+ L N +S ++K++ ++ D+D FK +ND Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH +GD+++ ++++L + R+GG+EF A + +EA LA + +I+ Sbjct: 306 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLHLIQ 365 Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S QI SG I+I+ S GIA H + + ++ AD A+ ++K+ GRN FS Sbjct: 366 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 419 >gi|218779937|ref|YP_002431255.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218761321|gb|ACL03787.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 399 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 14/223 (6%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97 +A +++ N+ Y G +G++ I + +++ ++++ L ++ ++L S Sbjct: 176 MAVMVYFVNVAADYTGKD--FGIQQINIVTFTVLAVALSRVLYYAHVRDFKNRKLIKSQK 233 Query: 98 NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPV 150 R+ +LS D L+ +LN +F IS + + + LS++ FD D FK IND GH Sbjct: 234 QRLLELSNKDHLTNVLNRRSFAEISEVETARSRRHAGPLSLIIFDFDNFKCINDQSGHSA 293 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ + + R GGEEF + ++ ++AA LA+ LR +IE + Sbjct: 294 GDAVLVHTAELIQQNIRKTDILFRWGGEEFIILSPETALEDAAALADKLRLLIE--EYTF 351 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G + T S G A+ H E I I RAD+ALY AK GRN Sbjct: 352 PHG--VKATASFGAAQYTHGESIEDTIQRADKALYQAKTKGRN 392 >gi|94270482|ref|ZP_01291755.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93450777|gb|EAT01829.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] Length = 271 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 8/160 (5%) Query: 107 DCLSGLLNHSA------FISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GL NH+A +S N L + D+D+FK++ND +GH GD+V+ L+ Sbjct: 102 DAMTGLYNHTAGKEHLNLATSTAQRNGSPLCLAIIDVDWFKKVNDTYGHATGDQVLITLA 161 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L T V R GGEEF A G A + +++R+ + + H + Sbjct: 162 RLLKQRLRTTDIVCRFGGEEFGAILPGCDLPTAQRIMDEMRQSYAAIEFRADE-VTFHSS 220 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S G+A + + AD +LY AK GRNRVV ++ Sbjct: 221 FSCGVASIADCDGPVELWKAADMSLYAAKNGGRNRVVTWT 260 >gi|121998494|ref|YP_001003281.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Halorhodospira halophila SL1] gi|121589899|gb|ABM62479.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Halorhodospira halophila SL1] Length = 749 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 13/182 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 S + +L +++R L+ D L+GL N S F I+ + ++ ++F D+D+FK Sbjct: 301 SDITQLKDAHSRSEYLANHDPLTGLPNRSLFQDRLQQAIAQTQRHEGQVGLMFLDLDHFK 360 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND GH VGD+++ ++++L + V R+GG+EF +E +A Sbjct: 361 TINDTLGHEVGDELLVQVAERLGELVRDVDTVARIGGDEFTVVLTDCDPEEVGSIAQ--- 417 Query: 201 KIIEN-SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV-VC 257 +++E + G + T SAG+A E + T+ AD A+Y AK+ GRNR+ +C Sbjct: 418 RLVEGLGGTFVVDGRELQATPSAGLALYPRDGEDVHTLCKAADMAMYRAKEDGRNRLRLC 477 Query: 258 FS 259 S Sbjct: 478 ES 479 >gi|103485521|ref|YP_615082.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256] gi|98975598|gb|ABF51749.1| diguanylate cyclase [Sphingopyxis alaskensis RB2256] Length = 584 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 8/165 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R L+R D L+GL N FI S+ N +++ DID FK IND GH G Sbjct: 401 RAQTLARRDPLTGLANRRGFIDSVTPLLDRARVGNLPAALLLVDIDRFKSINDIHGHEAG 460 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ + ++ G V RLGGEEF +G + A +R+ + + ++ Sbjct: 461 DAVLCTIGQRIERWEGPMCTVARLGGEEFGLLTIGMEGIVLSRFAESIRRGLADCDHSVI 520 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G +T S G+AE + AD+ALY AK+ GRNRV+ Sbjct: 521 VGDR-PVTASIGVAEVRPACDFKQLYRVADEALYDAKRGGRNRVI 564 >gi|323487725|ref|ZP_08092983.1| response regulator receiver domain-containing protein [Planococcus donghaensis MPA1U2] gi|323398459|gb|EGA91247.1| response regulator receiver domain-containing protein [Planococcus donghaensis MPA1U2] Length = 577 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 17/175 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 ++L ++ + QL+ D L+ + N L + + LSI+ DID+FK +N Sbjct: 405 QQLELAKQELEQLANTDRLTQIPNRLRLDQVLETELRRAQHDAVPLSIILLDIDHFKSVN 464 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH +GD V+ ++ L VGR GGEEF ++ +A L++ +R+ Sbjct: 465 DQFGHQIGDIVLTEVAKLLKDHIRAGDTVGRWGGEEFLIICPDTTIDDAIRLSSKIREQF 524 Query: 204 EN---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E ++ +G S G+ + ++T + RAD ALY AK GRNRV Sbjct: 525 EQYHFQEVERKTG-------SFGVTAYMAGDTLNTFVSRADHALYQAKDKGRNRV 572 >gi|289646639|ref|ZP_06477982.1| GGDEF [Pseudomonas syringae pv. aesculi str. 2250] Length = 328 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 21/232 (9%) Query: 31 FSIFFSIFIATVIFIANIFL--FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG- 87 S+FF FI V A I+L + LT G+++ LS V + I+ +LL G ++ Sbjct: 108 MSVFFVKFIDYVAAAALIWLIMWQTDLTAV-GVDH---APLSYVFL-ISSTLLGGSLNAN 162 Query: 88 --SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVF--FDIDYFK 140 S++ + + +R +LS+ D L+ N A ++SL + ++K S+ F D+D FK Sbjct: 163 FLSLVMQTMAASDRYQKLSKTDTLTNAPNRRALVASLDNALTSDDKSSLWFAMLDLDNFK 222 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 INDN GH VGD V+ + + G F GRLGGEEF S AA + Sbjct: 223 SINDNHGHDVGDNVLICFATLIKNTTGLVNF-GRLGGEEFGVML---SAANAADAIAAMD 278 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 ++ ++Q + ++ + + SAGIA + ++ ++ AD+ LY+AK+SGR Sbjct: 279 HLLMHAQKDQTA--KMPYSFSAGIASLARAKNVNDLLKEADENLYLAKRSGR 328 >gi|288941968|ref|YP_003444208.1| diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288897340|gb|ADC63176.1| diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 365 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 17/175 (9%) Query: 107 DCLSGLLNHSAFISSLGS-YNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F +G +NE L + V DID+FK+IND GH GD+V+ + Sbjct: 156 DTLTGLYNARHFWECIGQCFNEHLHTGVSFAFVILDIDFFKRINDTHGHLGGDRVLEQFA 215 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R+GGEEFA S E + L ++ I I I +T Sbjct: 216 SALRESTRKTDIVARIGGEEFALILHNVSSDETKQYLHRLHGLLRERDIRIGPEQRIKVT 275 Query: 220 ISAG-------IAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFSDIENN 264 S G + PI+T I+ RAD ALY K +GRN ++ + ++ ++ Sbjct: 276 ASVGYYVIEKPLPPALTVPPITTTQDIVKRADDALYWVKNNGRNGIMAWHELTHD 330 >gi|262370287|ref|ZP_06063613.1| diguanylate cyclase [Acinetobacter johnsonii SH046] gi|262314629|gb|EEY95670.1| diguanylate cyclase [Acinetobacter johnsonii SH046] Length = 389 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 83/158 (52%), Gaps = 17/158 (10%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ L N F + +LS ++ DID+FK+IND +GH VGD+++ Q Sbjct: 227 DPLTHLFNQRGFNEAAKRKLHQLSKQPYFLLMCDIDHFKKINDTYGHLVGDQIL----QQ 282 Query: 162 LVVVFG----TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +V + G T VGR GGEEF A +AN +R I ++++ S +I Sbjct: 283 VVEIIGQNVRTHDLVGRFGGEEFIVLLQIDDPTLAYNIANRIRLGIADARL---SSKNIA 339 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G+A H+ + I+ ADQ LY AK SGRN++ Sbjct: 340 VTASFGLAA-VHQPNLKYAIHDADQLLYQAKHSGRNQI 376 >gi|188575690|ref|YP_001912619.1| Putative signal protein with PAS(PAC), GGDEF and EAL domains [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520142|gb|ACD58087.1| Putative signal protein with PAS(PAC), GGDEF and EAL domains [Xanthomonas oryzae pv. oryzae PXO99A] Length = 798 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 9/164 (5%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL+N L S ++ F D+DYFK +ND FGH VGDK + + Sbjct: 370 DALTGLINRHEIERRLQLLIELPRSPQMCHALCFVDMDYFKLVNDTFGHAVGDKFLCHFA 429 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D + + ++GRLGG+EFA + +A L + ++ + G + + Sbjct: 430 DVITMQLRPGDWLGRLGGDEFAILLANTDLPQARALLEGMHAVL-GQPWSHQGGRPLTPS 488 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 S G+ E R +++++ AD A + AK+ GRNR+ CF++ + Sbjct: 489 CSFGVVEIRQSASDVNSLMTAADLACHAAKEEGRNRIRCFNETD 532 >gi|121592523|ref|YP_984419.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42] gi|120604603|gb|ABM40343.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax sp. JS42] Length = 1108 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 12/170 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI LS D L+GLLN AF I + +E++S+++FD+D FK +N+ GH G Sbjct: 672 RIRALSNYDTLTGLLNKKAFDEQLTQAIDRADASHERVSVLWFDLDNFKLVNETLGHAAG 731 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINI 210 D+++ + ++L + V R G+ F A + + A+LA D L ++ QI+ Sbjct: 732 DELLLEMGNRLRACLAPHIPVARYSGDAFTAIVPLADQAAVALLAQDALAQLQTTLQIH- 790 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 G ++ ++ SAGIA ST+ A+ A+Y K+ GRN + F+ Sbjct: 791 --GHAVSVSASAGIAVYPDDARTASTLASAAEVAMYRVKQDGRNGLRFFA 838 >gi|28198202|ref|NP_778516.1| GGDEF family protein [Xylella fastidiosa Temecula1] gi|28056272|gb|AAO28165.1| GGDEF family protein [Xylella fastidiosa Temecula1] Length = 594 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 20/163 (12%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G L A I LS+ F DID+FK+IND +GH GD + + Sbjct: 435 VDGLTGALTRVAIERRLERDIDDARQMGTPLSVAFIDIDHFKRINDEYGHAAGDACLRQV 494 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214 ++ +GR GG+E A G+ A R++ E ++ +SS P Sbjct: 495 VQRVRGWLRASDALGRHGGDELIAILPGADLVAA-------RRVAEGIRVAVSSQPFQFE 547 Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T+S G+A E I ++ RAD LY +K +GR+RV Sbjct: 548 CTRLRCTLSLGVASWLPDESIEALLQRADNGLYASKAAGRDRV 590 >gi|15595367|ref|NP_248859.1| hypothetical protein PA0169 [Pseudomonas aeruginosa PAO1] gi|116053890|ref|YP_788327.1| GGDEF domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218888914|ref|YP_002437778.1| putative GGDEF domain [Pseudomonas aeruginosa LESB58] gi|254237593|ref|ZP_04930916.1| hypothetical protein PACG_03674 [Pseudomonas aeruginosa C3719] gi|254243277|ref|ZP_04936599.1| hypothetical protein PA2G_04085 [Pseudomonas aeruginosa 2192] gi|9946001|gb|AAG03559.1|AE004454_11 hypothetical protein PA0169 [Pseudomonas aeruginosa PAO1] gi|115589111|gb|ABJ15126.1| putative GGDEF domain [Pseudomonas aeruginosa UCBPP-PA14] gi|126169524|gb|EAZ55035.1| hypothetical protein PACG_03674 [Pseudomonas aeruginosa C3719] gi|126196655|gb|EAZ60718.1| hypothetical protein PA2G_04085 [Pseudomonas aeruginosa 2192] gi|218769137|emb|CAW24897.1| putative GGDEF domain [Pseudomonas aeruginosa LESB58] Length = 235 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L NE+ + D+D+FKQ+ND +GH GD+V+ ++ Sbjct: 63 DPLTGLPNRRMLLERLREENERSQRHGQSYVLAMLDVDFFKQVNDTWGHDSGDRVLVEIA 122 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + GR GGEEF + Q+A + +R + + + + ++ +T Sbjct: 123 RAMESELREYDLCGRWGGEEFLLLLPQTRLQDAGPVLERVRDSVRTLAVRVGT-EALSVT 181 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+ E E S + RAD AL AK+SGR++ V Sbjct: 182 ASVGVTEHRIGETYSQTVNRADAALLDAKRSGRDKCV 218 >gi|108803901|ref|YP_643838.1| diguanylate cyclase [Rubrobacter xylanophilus DSM 9941] gi|108765144|gb|ABG04026.1| diguanylate cyclase [Rubrobacter xylanophilus DSM 9941] Length = 378 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 12/179 (6%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136 Y+ + ++ ++ + +L+ D L+G+ N + ++L Y + LS++ FD+ Sbjct: 201 YVKSQLARQRTLA-EAMHRLAHTDPLTGISNRRSLYAALRREMEAARRYGKPLSVILFDL 259 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D FK +ND +GH GD + ++ +GR GGEEF A + +A LA Sbjct: 260 DRFKLLNDTYGHNQGDAALRRVAHTARAALRASDHLGRWGGEEFIVLAPETDLDQARHLA 319 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 LR+ I ++ G +T S G+A + ++ RAD+ LY AK GRNR Sbjct: 320 ERLREAI---ALDRPPG-RPPLTASFGVASCRPDDSPEDLLRRADEGLYRAKAGGRNRA 374 >gi|325917091|ref|ZP_08179324.1| diguanylate cyclase with GAF sensor [Xanthomonas vesicatoria ATCC 35937] gi|325536667|gb|EGD08430.1| diguanylate cyclase with GAF sensor [Xanthomonas vesicatoria ATCC 35937] Length = 356 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N AF ++L + ++ LS+ D+D+FK +ND GH GD V+ Sbjct: 200 TRTDPLTGLPNRRAFTAALAAATQQTHIASQPLSVALLDVDHFKVVNDVHGHDQGDLVLR 259 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 LS L + R GGEEF Q+A + LR+ + I ++ Sbjct: 260 ELSALLRAHVAGAGTIARYGGEEFVLLLPNVDLQQARVQCEYLRQSVATMSI------AL 313 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +T+S G+A E + +I RADQALY AK+ GR++VV Sbjct: 314 PVTVSIGVAMLYPHESVEAVIKRADQALYAAKRGGRDQVVALE 356 >gi|325474242|gb|EGC77430.1| GGDEF domain-containing protein [Treponema denticola F0402] Length = 987 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 12/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQI 142 K+L + +++ LS +D L+G+ N + ++G + +S++ DID FKQ Sbjct: 808 KDLISANKQLTVLSTVDELTGVGNRRQ-LDTVGKDLWRRGLDNKQPISLIMIDIDLFKQY 866 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD V+ ++ L FVGR GGEEF SS E +A LR Sbjct: 867 NDLYGHQAGDNVLRTVAQTLQKKLRAKYDFVGRYGGEEFLVLLYNSSASETMKIAEKLRI 926 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253 I+N I S+ + +TIS G +S T++ AD ALY AK+SGR+ Sbjct: 927 EIKNLNIEHSAEKNKILTISLGAYTSVPSNELSYETMLSFADSALYKAKESGRD 980 >gi|319795141|ref|YP_004156781.1| diguanylate cyclase with pas/pac sensor [Variovorax paradoxus EPS] gi|315597604|gb|ADU38670.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus EPS] Length = 1013 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 13/174 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 +++ +L+R+D L+GL N AF L + ++++F DID FK IND GH Sbjct: 842 SQLIELARLDTLTGLPNRLAFNELLPAALLRAQRTGSAMALMFLDIDAFKTINDTLGHAS 901 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209 GD V+ +++L V RL G+EF ++AA +A + I Sbjct: 902 GDSVLVEYANRLRSSVRATDIVARLAGDEFVVVLENLPARDAAAGVAQKILAQIRAPAFR 961 Query: 210 ISSGPSIHITISAGIAERCHKE-PIST--IIYRADQALYVAKKSGRNRVVCFSD 260 + S P + +T S GIA R + P++ ++ AD ALY AK +GRNR FSD Sbjct: 962 LDSQP-LQVTTSIGIAFRLGGDAPVTAEELLAHADSALYAAKSAGRNRFE-FSD 1013 >gi|115358604|ref|YP_775742.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria AMMD] gi|115283892|gb|ABI89408.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria AMMD] Length = 516 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLN----HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVG 151 I L+R D L+GL N H+ L + L++++ D+D FK IND FGH G Sbjct: 338 IRHLARHDALTGLPNRHELHAELRRRLAHRPRMPSPALAVMYLDLDGFKAINDRFGHQAG 397 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++++L R+GG+EF A ++ Q +ILA + + I ++ +S Sbjct: 398 DEVLTQVAERLGKTLPPGELAARIGGDEFVVAIDDTTMQACSILAARIIRQI-SAPYTLS 456 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 G ++ + IS GIA + H P +I +AD ALY AK G+ Sbjct: 457 IGATVSLGISIGIALDDGHGSP-DELIRQADSALYDAKSGGKG 498 >gi|323947186|gb|EGB43194.1| GGDEF domain-containing protein [Escherichia coli H120] Length = 476 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 429 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 465 >gi|152999891|ref|YP_001365572.1| diguanylate cyclase [Shewanella baltica OS185] gi|304409483|ref|ZP_07391103.1| diguanylate cyclase [Shewanella baltica OS183] gi|307303841|ref|ZP_07583594.1| diguanylate cyclase [Shewanella baltica BA175] gi|151364509|gb|ABS07509.1| diguanylate cyclase [Shewanella baltica OS185] gi|304352001|gb|EFM16399.1| diguanylate cyclase [Shewanella baltica OS183] gi|306912739|gb|EFN43162.1| diguanylate cyclase [Shewanella baltica BA175] Length = 518 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + + L + DID+FK IND+FGH GDK Sbjct: 354 QKLNLLDSLTQLPNRAALEERMDLEYRNYQRHKSPLWVAVADIDHFKTINDSFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF + + A L N +R+ ++N + Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLLPDVAPADIAQLLNRVREKVKNIPFKFKNQ 473 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A+ E I RAD ALY AK R+RVV Sbjct: 474 -RITVTVSIGAAQVMGSELIHETFERADAALYKAKHESRDRVV 515 >gi|116255469|ref|YP_771302.1| GGDEF family regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260117|emb|CAK03218.1| putative GGDEF family regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 298 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 13/204 (6%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ E + L I S SL G I+++ ++ + S D L+G+ N Sbjct: 99 FWMTEAVQKSGWMLCIASDITSL---RAHGRIVRQ---DRDQAIKASYTDELTGVANRRF 152 Query: 118 FISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 ++ + + + FDID FK+IND GH GD V+ + ++ + Sbjct: 153 VMARVDDMLTAARHGNNGCLAVFDIDNFKRINDRLGHHAGDVVLRDFAHRIHQIVRRNDC 212 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE 231 GR+GGEEF + ++A + + +I S+ + P T SAGIA + Sbjct: 213 FGRVGGEEFVLVMPATGPEDAVAMVERMLTVIRFSR-PLPESPDFSYTCSAGIAACTPSD 271 Query: 232 PISTIIYRADQALYVAKKSGRNRV 255 S + RADQALY AK SGR+RV Sbjct: 272 SASDLYRRADQALYAAKLSGRDRV 295 >gi|330505055|ref|YP_004381924.1| response regulator WspR [Pseudomonas mendocina NK-01] gi|328919341|gb|AEB60172.1| response regulator WspR [Pseudomonas mendocina NK-01] Length = 340 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 13/169 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L + D L+GL N F L +LS++ D+DYFK ND GH GD Sbjct: 167 LQRLIKSDSLTGLANRRYFDEYLEIEWSRALRDQSELSLLMIDVDYFKAYNDQHGHVAGD 226 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 +V+ + + L R GGEEFA G++ A + A +R+ +E I Sbjct: 227 EVLRRVGESLRSSCTRATDLAARYGGEEFAVIMPGTAAGGARLQAEKIRRAVEAMGIPHD 286 Query: 212 -SGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P I++S GIA +P+S +I +AD+ LY+AK SGRN+VV Sbjct: 287 LPKPGSPISVSIGIATIRPSVEHDPLSLVI-KADEGLYLAKHSGRNQVV 334 >gi|297623985|ref|YP_003705419.1| diguanylate cyclase [Truepera radiovictrix DSM 17093] gi|297165165|gb|ADI14876.1| diguanylate cyclase [Truepera radiovictrix DSM 17093] Length = 685 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 10/179 (5%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDID 137 ++L +L R+ Q +R D L+GL N AF ++ Y LS+ D+D Sbjct: 509 KAALLAQLREQAERLEQQTREDALTGLYNRRHLEEVLREAFAAAQ-RYRHPLSVALIDLD 567 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK +ND H +GD V+ ++ T V R GGEEF + Q A + Sbjct: 568 NFKGVNDTLSHQIGDGVLRAAAEVFARFTRTVDIVARYGGEEFVLVMPQTDLQGARAVCE 627 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R+ IE P + +T+S G+A+ + ++ AD LY AK++G+NRVV Sbjct: 628 RIREAIEQYPW-WELHPELQVTVSIGLADDLSVKDHEKLLALADDNLYRAKRAGKNRVV 685 >gi|169797059|ref|YP_001714852.1| GGDEF domain-containing protein [Acinetobacter baumannii AYE] gi|213156535|ref|YP_002318196.1| diguanylate cyclase [Acinetobacter baumannii AB0057] gi|215484520|ref|YP_002326755.1| Uncharacterized protein yneF [Acinetobacter baumannii AB307-0294] gi|332852148|ref|ZP_08433975.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013150] gi|332867547|ref|ZP_08437700.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013113] gi|169149986|emb|CAM87880.1| putative membrane protein; putative GGDEF domain [Acinetobacter baumannii AYE] gi|213055695|gb|ACJ40597.1| diguanylate cyclase [Acinetobacter baumannii AB0057] gi|213987432|gb|ACJ57731.1| Uncharacterized protein yneF [Acinetobacter baumannii AB307-0294] gi|332729520|gb|EGJ60859.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013150] gi|332733964|gb|EGJ65109.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013113] Length = 473 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L F+ S+ EK+ + D+D+FK++ND++GH +GD+ + Sbjct: 312 DELTSSLTRRQFLQSVRLLQEKVQKENKTSAFFMLDVDHFKKVNDSYGHLIGDRALQTCV 371 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + +GR GGEEFA ++ + A LA +R I I + I + Sbjct: 372 TTIQNILHPHDLLGRFGGEEFAIFIPDTTREAAFELAERIRIQISQQPIYVYGKLPIFVQ 431 Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S GI+ + I ++ AD ALY AK+ GRNRV Sbjct: 432 VSIGISLYSPSYHRSIESLFKEADDALYQAKRQGRNRV 469 >gi|150017747|ref|YP_001310001.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] gi|149904212|gb|ABR35045.1| diguanylate cyclase [Clostridium beijerinckii NCIMB 8052] Length = 367 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 17/167 (10%) Query: 104 SRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 S D L+ + N S F + +Y N+ ++F D+D FK INDN GH VGD+V+ Sbjct: 200 SEYDQLTQIYNKSTFYEKVKNYIIDNKNDNCMLIFIDLDNFKAINDNLGHMVGDEVLKDT 259 Query: 159 SDQLVVVF-GTPMFVGRLGGEEFAAAALGSS----EQEAAILANDLRKIIENSQINISSG 213 ++++ VF GT + + R GG+EF S + + +IL ++L I + Sbjct: 260 ANKICDVFNGTDVIISRFGGDEFCVFKPSHSISFIKDKISILCSNLNATY------IGNN 313 Query: 214 PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I ++ S G+A H + + ++I+++D ALY +K++G+N+ ++ Sbjct: 314 TEITVSASIGVAFYPKHGDTLESLIHKSDIALYSSKENGKNQFTIYN 360 >gi|85711376|ref|ZP_01042435.1| GGDEF family protein [Idiomarina baltica OS145] gi|85694877|gb|EAQ32816.1| GGDEF family protein [Idiomarina baltica OS145] Length = 630 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 9/171 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGH 148 EL + ++ L+ +D L+GL N AF L S + ++ DID FK NDN+GH Sbjct: 463 ELAEANRKLDALAHMDGLTGLFNRRAFDRDLDAAISSGKPYHLMIADIDEFKAYNDNYGH 522 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIE-NS 206 GD I +++ L TP+ V R GGEE A + + E+ + N+LR K+IE N Sbjct: 523 EAGDSAIKEIAECLRS--NTPLKVYRYGGEELAMIVPSAYDLESKL--NELRDKVIELNI 578 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + ++ +++S G A + + I RAD+ LY AK++G+N VV Sbjct: 579 PHHYTNTDRSCLSLSMGAAPIQRDDDSRSAIRRADKQLYAAKRAGKNCVVT 629 >gi|333024424|ref|ZP_08452488.1| putative GAF domain/GGDEF domain/EAL domain-containing protein [Streptomyces sp. Tu6071] gi|332744276|gb|EGJ74717.1| putative GAF domain/GGDEF domain/EAL domain-containing protein [Streptomyces sp. Tu6071] Length = 189 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 13/166 (7%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVG 151 +S R +R D L+GL AF +E+ +V D+D+FKQ+ND GH G Sbjct: 1 MLSLRRGLTRARRDPLTGLWTRDAFTRKARRLLRDERAVVVLADVDHFKQVNDRHGHAAG 60 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++A ++ +L G GRLGG+EFAA + + A DL ++ + Sbjct: 61 DALLASVARRLAHATGPNGVCGRLGGDEFAAVLIDTDGTAA-----DLLTLLHGVLARPA 115 Query: 212 SG-PS-IHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGR 252 G PS + T+S G R P +S ++ RAD+A+Y AK++ R Sbjct: 116 EGQPSEVAATVSLGWV-RAADHPGGDLSALLARADEAMYEAKRAHR 160 >gi|304438464|ref|ZP_07398404.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368547|gb|EFM22232.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 605 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 14/174 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL +++QL+ D L+ LLN +S + LS++ DIDYFK +N Sbjct: 425 EELHTVNQQLTQLAIRDTLTNLLNRREMERLLKEAVSVSQTQKTPLSVILMDIDYFKGVN 484 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GDKV+ +SD + R GG+EF G+ A + +R+ + Sbjct: 485 DTYGHDMGDKVLLTVSDAISHTIRGSDAGCRWGGDEFFIILQGAPLAVAGRVGERIRRRV 544 Query: 204 ENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255 E +++ P H +TIS G+A ++ +++ AD+ALY AKK+GRN V Sbjct: 545 EEAKM-----PFHHNVTISVGVAAFDPEQDNELQLFKNADEALYQAKKAGRNVV 593 >gi|296156558|ref|ZP_06839396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. Ch1-1] gi|295893157|gb|EFG72937.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. Ch1-1] Length = 1059 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 21/185 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148 S RI L+ D L+ L N F+ LG ++++++F D+D FK IND+ GH Sbjct: 622 SEARIQFLAEHDVLTELPNRELFVKRLGVVLGNARRTGQRVAVLFIDLDRFKNINDSLGH 681 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD ++ +S +L+ T V RLGG+EF S A D+ + IE + Sbjct: 682 HIGDSLLRSVSRRLLQAVRTNDTVSRLGGDEFTVILNSVSN------AADVTRTIEERLL 735 Query: 209 NISSGP------SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS-D 260 + P ++ ++ S G+A E I T++ AD A+Y AK +GRN V F+ D Sbjct: 736 PLVRQPHEVGGVTLQVSCSVGVALFPDDGEDIETLMQNADAAMYQAKGAGRNLVKFFAPD 795 Query: 261 IENNT 265 I T Sbjct: 796 IAERT 800 >gi|269104164|ref|ZP_06156860.1| hypothetical protein VDA_000319 [Photobacterium damselae subsp. damselae CIP 102761] gi|268160804|gb|EEZ39301.1| hypothetical protein VDA_000319 [Photobacterium damselae subsp. damselae CIP 102761] Length = 734 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 21/176 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFI--------SSLGSYNEKLSIVFFDIDYFKQ 141 + E + N++ +L+ D L+GL N + F+ GS LS++F D+D+FK+ Sbjct: 293 ITETKATRNQVEKLAYYDSLTGLPNRALFLKRLKKLLNDDAGSSQLPLSLMFIDLDHFKE 352 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND GH GD ++ + + + + + RLGG+EF A + ++A +A L + Sbjct: 353 INDTQGHDHGDCLLQTIGQTIRSILESHHTLARLGGDEFVVIAPDTDAEQAQTIAYKLHQ 412 Query: 202 IIEN----SQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSG 251 I NIS G SI IT+ C K+ +ST++ +AD A+Y AK G Sbjct: 413 TISQPIPLKGQNISVGASIGITV-------CEKQGPSVSTLLKQADIAMYRAKAQG 461 >gi|160900263|ref|YP_001565845.1| diguanylate cyclase [Delftia acidovorans SPH-1] gi|160365847|gb|ABX37460.1| diguanylate cyclase [Delftia acidovorans SPH-1] Length = 392 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 22/206 (10%) Query: 68 NLSLVIISITISLL-LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--- 123 LSL++ + ++L L ++EL +R D L+GLLN AF ++ Sbjct: 198 QLSLLVFGLLFAMLFLAAAVRDTVQELHEERDR-------DPLTGLLNRRAFKEAVQRRL 250 Query: 124 SYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + +LS ++ D+D+FK++ND +GH GD+V+ + L+ V R GGEEF Sbjct: 251 AEQPQLSAAVLVCDLDHFKRVNDGWGHAAGDEVLQRFARLLLRSTRQQDLVARFGGEEF- 309 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINI---SSGP-SIHITISAGIAERCHKEPISTII 237 A L ++ AA R+I +Q+ + S+ P I IT S G+A + + + Sbjct: 310 VALLPHADPLAAQWIT--RRI--QTQLRLMGFSALPDDIRITASFGVAWMAQGQTLEQAL 365 Query: 238 YRADQALYVAKKSGRNRVVCFSDIEN 263 RAD LY AK++GR+RV E+ Sbjct: 366 ARADAMLYEAKRAGRDRVRLVPQEED 391 >gi|91779130|ref|YP_554338.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans LB400] gi|91691790|gb|ABE34988.1| Putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains) with PAS/PAC sensor(s) [Burkholderia xenovorans LB400] Length = 1059 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 21/185 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148 S RI L+ D L+ L N F+ LG ++++++F D+D FK IND+ GH Sbjct: 622 SEARIQFLAEHDVLTELPNRELFVKRLGVVLGNARRTGQRVAVLFIDLDRFKNINDSLGH 681 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD ++ +S +L+ T V RLGG+EF S A D+ + IE + Sbjct: 682 HIGDSLLRSVSRRLLQAVRTNDTVSRLGGDEFTVILNSVSN------AADVTRTIEERLL 735 Query: 209 NISSGP------SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS-D 260 + P ++ ++ S G+A E I T++ AD A+Y AK +GRN V F+ D Sbjct: 736 PLVRQPHEVGGVTLQVSCSVGVALFPDDGEDIETLMQNADAAMYQAKGAGRNLVKFFAPD 795 Query: 261 IENNT 265 I T Sbjct: 796 IAERT 800 >gi|89094625|ref|ZP_01167562.1| GGDEF domain protein [Oceanospirillum sp. MED92] gi|89081095|gb|EAR60330.1| GGDEF domain protein [Oceanospirillum sp. MED92] Length = 405 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 16/205 (7%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122 + V L+L+++ I I+ ++ + K L ++ L+ +D ++GL N + + Sbjct: 196 LFVGGLALIVLGI-ITTAFAFMRKAA-KRLISQQYQLETLATVDSVTGLYNRAEITRRME 253 Query: 123 ---------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 G K +++ D+D+FK+INDN+GH GD+++ ++ +L + +G Sbjct: 254 AEWQRFKRGGPDARKFALLMLDLDHFKRINDNYGHLAGDELLRRVAGRLREELRSYSEIG 313 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKE 231 R GGEEF + +A +A LR + ++ ++ IT S G IA+ K+ Sbjct: 314 RYGGEEFIVLIPEITNCDAYSVAERLRVRLVEPGFDLGD-ETVSITTSIGFAIADDSDKD 372 Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256 + +I RAD LY AK +GRNRVV Sbjct: 373 -LDALIKRADDCLYEAKGAGRNRVV 396 >gi|329906570|ref|ZP_08274425.1| putative PAS, PAC and GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327547260|gb|EGF32109.1| putative PAS, PAC and GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 448 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 14/220 (6%) Query: 50 LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG-SILKELFISYNRISQLSRIDC 108 L Y L P GL + V N + + G+I+ + K L I + + + D Sbjct: 234 LDYRVLLPVQGLRWRNV-NARPTRLPDGSTQWHGFITDITERKRLDIE---LREFATTDY 289 Query: 109 LSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L N F++ L ++ +++ D+D+FK IND GH GD V+A + Sbjct: 290 LTRLPNRRHFLTCLREELARIHRGQPSTAVLMCDLDHFKNINDTHGHAAGDLVLAHFAGM 349 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L GR+GGEEFA G++ A + A +R+ + SQ + +G + +T+S Sbjct: 350 LQEQLRVNDTAGRIGGEEFAIVLSGATLASATLFAERVRQRMA-SQPPMVTGQPLVVTVS 408 Query: 222 AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 GIA + + ++ R+D+ALY AK++GR+R+ D Sbjct: 409 IGIAVMLASDIHVEAVLSRSDRALYRAKEAGRDRIETAVD 448 >gi|322433861|ref|YP_004216073.1| diguanylate cyclase with PAS/PAC and GAF sensors [Acidobacterium sp. MP5ACTX9] gi|321161588|gb|ADW67293.1| diguanylate cyclase with PAS/PAC and GAF sensors [Acidobacterium sp. MP5ACTX9] Length = 496 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 84/172 (48%), Gaps = 15/172 (8%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+ D L+GLLN A ++ + E LSIV D+D FK+ ND FGH G Sbjct: 317 KLEQLATRDGLTGLLNRRALDEKIELEFENVRRHKEPLSIVLLDVDNFKRRNDQFGHASG 376 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIENSQINI 210 D+V+ L + GR GGEE L ++ E A+L A L I + I Sbjct: 377 DQVLRQLGHLVSNTMRVLDTAGRYGGEEI-VILLPKTDYEGALLFAKRLHDGIHRERWAI 435 Query: 211 SSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDI 261 +T S G+A S ++ +AD A+Y AK+SG++R+V D+ Sbjct: 436 EP-----VTASLGVATTSATTKDSNRLLAQADDAMYEAKRSGKDRIVAHRDV 482 >gi|323529554|ref|YP_004231706.1| diguanylate cyclase [Burkholderia sp. CCGE1001] gi|323386556|gb|ADX58646.1| diguanylate cyclase [Burkholderia sp. CCGE1001] Length = 607 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 25/190 (13%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140 S + L + + L+ D L+GL N F+ L + L+++F D+D FK Sbjct: 394 SQMDALHVKQRELVHLATHDVLTGLPNRMLFMEKLERAIQEATRRRQGLAVLFVDLDRFK 453 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA------I 194 QIND FGH VGDKV+ ++ +L V V RLGG+EF G EAA I Sbjct: 454 QINDQFGHSVGDKVLVAVALRLKQVLHAADVVARLGGDEFIVLIEGPRSAEAAPGIASRI 513 Query: 195 LANDLRKIIENSQINISSGPSIHITI---SAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + +I+ + Q ++ G SI I+ +G AE ++ AD A+Y AK G Sbjct: 514 MTTLNEEIVMDGQ-GMTVGASIGISQFPDDSGTAE--------ELLLNADAAMYAAKSGG 564 Query: 252 RNRVVCFSDI 261 R + + D+ Sbjct: 565 RCAYLRYHDV 574 >gi|295699665|ref|YP_003607558.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1002] gi|295438878|gb|ADG18047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1002] Length = 667 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 13/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYF 139 SG+ + E ++ R+ + + D L+GL N +A + + E + ++F D+D F Sbjct: 220 SGTDITEQRLAQERLIEQATTDPLTGLANRNAIQERIQIAIEQAAPGETVGVLFLDLDNF 279 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILAND 198 K++ND++GH GD++I +SD + + RLGG+EF AA GS A L + Sbjct: 280 KKVNDHYGHVFGDRLICDVSDAIRNCLNPGDSLARLGGDEFIVLAAKGS----AHGLEDI 335 Query: 199 LRKIIENSQINISSG-PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 ++I++ ++ + G ++ S GIA H E + ++I AD A+YVAK G+ Sbjct: 336 AQRILDRMRMPFAVGLVEVYTGCSIGIARWPEHGETLESLIRSADTAMYVAKDEGKRTHR 395 Query: 257 CFS 259 FS Sbjct: 396 VFS 398 >gi|193064512|ref|ZP_03045592.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22] gi|193070800|ref|ZP_03051734.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E110019] gi|194428457|ref|ZP_03060997.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171] gi|209918281|ref|YP_002292365.1| hypothetical protein ECSE_1090 [Escherichia coli SE11] gi|192927764|gb|EDV82378.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E22] gi|192955911|gb|EDV86380.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E110019] gi|194413509|gb|EDX29791.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli B171] gi|209911540|dbj|BAG76614.1| conserved hypothetical protein [Escherichia coli SE11] Length = 476 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 429 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 465 >gi|153839271|ref|ZP_01991938.1| ggdef family protein [Vibrio parahaemolyticus AQ3810] gi|260903409|ref|ZP_05911804.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|149747206|gb|EDM58194.1| ggdef family protein [Vibrio parahaemolyticus AQ3810] gi|308107617|gb|EFO45157.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] Length = 445 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 26/169 (15%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G +N A + L + LSI++ D+D FK+IND FGH +GD Sbjct: 275 AELAHRDALTGAMNRHAVQTWLEQQARQVRWGHSTLSILYMDLDNFKKINDKFGHQMGDD 334 Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 ++ + V+V + + R GGEEF ++ ++A A +RK N Sbjct: 335 ILR----EFVMVVASSIAPDDRLVRWGGEEFVVFCPDTNIEQAVKKAEMIRK-------N 383 Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ +H +T S G+A+ E ++ + RAD+ LY+AK++GRNRV Sbjct: 384 VANHLWVHGEALTCSIGVAQ-MQNERVTETMARADEVLYLAKRNGRNRV 431 >gi|153828324|ref|ZP_01980991.1| GGDEF family protein [Vibrio cholerae 623-39] gi|229513617|ref|ZP_04403081.1| GGDEF family protein [Vibrio cholerae TMA 21] gi|148876154|gb|EDL74289.1| GGDEF family protein [Vibrio cholerae 623-39] gi|229349494|gb|EEO14450.1| GGDEF family protein [Vibrio cholerae TMA 21] Length = 312 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 8/167 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS + S+ID L+ L N F S + L ++ FDID+FKQIND +GHP GD Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L R GGEEF LA +R+ +E++ + + Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDEMANVIGLAETIRRYVESNTL-MWQ 264 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+SAG A H +++ ADQAL AK+ GRNRV+ Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309 >gi|21242684|ref|NP_642266.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108156|gb|AAM36802.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306] Length = 980 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN + +++L L++V D+D+FK +ND GH GD V+A + Sbjct: 815 DELTGLLNRAGILAALREMLLHAEHQGRPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 874 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ + +GR GGEE A G + L R I + I+ G +H+T Sbjct: 875 RRMDTLMRGDDRIGRYGGEELLALLPGLNLDATHRLDALHRGICGDYPID---GGWLHVT 931 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E + ++ RAD ALY AK+SGRNRV Sbjct: 932 CSVGVAWFQRGETLEQLLARADAALYRAKRSGRNRV 967 >gi|37675711|ref|NP_936107.1| hypothetical protein VVA0051 [Vibrio vulnificus YJ016] gi|37200250|dbj|BAC96077.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 602 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 7/160 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 QL D ++ L N ++ +++ E L + +ID F++IND+FGHPVGD VI + Sbjct: 434 QLRHQDPMTQLENKASLANTVQRELGKEALYLAMINIDNFQRINDSFGHPVGDMVIRKTA 493 Query: 160 DQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + F P + + R G EEFA S EA N+L+ I N+++ + +G + Sbjct: 494 QMIRDAFPKPNGLCLARYGSEEFAVLFQSSDAHEAQTQLNELKHTISNTRL-LEAGLPVG 552 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +IS G+ + I A++AL AK G+NRVV Sbjct: 553 YSISVGLTQLA--PSYHETIENAERALQRAKNLGKNRVVT 590 >gi|240137808|ref|YP_002962280.1| putative sensory box-containing diguanylate cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and EAL domains [Methylobacterium extorquens AM1] gi|240007777|gb|ACS39003.1| putative sensory box-containing diguanylate cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and EAL domains [Methylobacterium extorquens AM1] Length = 815 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 11/172 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+ L+ D L+GL N + F G S ++ +++ D+D FK++ND GH GD Sbjct: 376 IAYLATRDPLTGLSNRAVFHDVAGEACTASMSGGPRVHLLYLDLDGFKKVNDTAGHCAGD 435 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ ++D+L V RLGG+EFA L EA ILA + I + + Sbjct: 436 DLLRQVADRLCASVDANAQVFRLGGDEFAILHLSRESAEAEILAEAV--IASLHRPYLIE 493 Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF-SDIE 262 G I +S GIA + ++ +AD ALY AK++GR R CF +D+E Sbjct: 494 GMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWQCFEADLE 545 >gi|254788398|ref|YP_003075827.1| ggdef family protein [Teredinibacter turnerae T7901] gi|237683759|gb|ACR11023.1| ggdef family protein [Teredinibacter turnerae T7901] Length = 431 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 8/169 (4%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSA---FISSL--GSYNEKLS-IVFFDIDYFKQINDNF 146 L I + +L+ D L+G+LN I L +Y++ + ++ ++D FK IN+ F Sbjct: 260 LAIEKASLQKLAHKDPLTGILNRRGAEEHIKRLYQNTYSKAFTAVLLLNLDNFKLINEQF 319 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD ++ S + + + R G EEF + ++Q+A A LR++ E + Sbjct: 320 GHDKGDAILKAFSALIQMNLESSDIFARWGSEEFLLVCVAENQQDALYRAEKLRQLTERT 379 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S P ++T S G+A E + RA AL AK+SGRNRV Sbjct: 380 --HLSPAPGFNVTTSIGVATIGGNESFQQALTRASAALQNAKRSGRNRV 426 >gi|227329062|ref|ZP_03833086.1| hypothetical protein PcarcW_17700 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 307 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 7/158 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAF 157 RI S D L+ L N FI+ L K +F DID FK IND +GH GD++++ Sbjct: 145 RIQSFS--DELTQLPNRRFFINELKKLEAKTPYLFIIDIDNFKVINDKYGHTKGDEILSK 202 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L + + R+GGEEFA ++ A LA R++++N+ I H Sbjct: 203 FGHILSRFDNSEVVATRIGGEEFAIILYAGTQARAEKLA---REVLKNANKIIIKNMH-H 258 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++S G ++ KEP + R D ALY AK +G+ +V Sbjct: 259 LSVSIGAGQKQPKEPTEHFMKRVDVALYQAKSTGKGKV 296 >gi|330901226|gb|EGH32645.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 355 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 15/240 (6%) Query: 21 SFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLV---IISIT 77 S S +I S ++ + +A L + L+P G++ V + + I S++ Sbjct: 97 SLSVAVMIILCSTLLVVYTRDYLVVA--VLAWCILSPAQGVDTDSVAAVFMTLFFITSVS 154 Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134 + ++ + L+ + ++ +LS D L+ +LN A + +L ++ N + Sbjct: 155 LGSVMNHTYTRTLRTVLSLEHQFRELSLTDDLTAILNRRALMQALDNHVLNNSAGYFLML 214 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID FK IND FGH GD+ + ++ L G+ F GR+GGEEF SE + Sbjct: 215 DIDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAF-GRMGGEEFGVILPMCSEDDVRD 273 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +L + I S ++ P +T SAG+A+ S ++ AD LY AK+ G++R Sbjct: 274 YVLNLLECIRKS---LAVSP---LTCSAGLADIPAAADSSEVLKTADINLYQAKRGGKDR 327 >gi|300310347|ref|YP_003774439.1| GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300073132|gb|ADJ62531.1| GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 23/226 (10%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLG----------YISGSILKELFISY--NRISQL 103 PF+ EY + I+ +LG I+G L E + +++ L Sbjct: 103 APFFQYEYPCHSPNEQRWFMMRIAPVLGAEDFFVISHVVITGRKLAEQRVERLNEKLALL 162 Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + D L+GL N I+ Y + LS++ DID+FK++NDNFGH GD V+ Sbjct: 163 AVTDKLTGLANRMKLDEVLDNEINRADRYGKNLSLILLDIDHFKEVNDNFGHSTGDAVLV 222 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +++ L + GR GGEEF ++AA +A LR +IEN P Sbjct: 223 RIAEILRANVRSSDLAGRWGGEEFLLILPECDMEDAARMAEKLRLLIENYNFV----PVG 278 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 T S G+A +T++ AD ALY AK +GRNRV +++E Sbjct: 279 RRTCSFGVAAYQAGHDRTTLLTLADLALYRAKNTGRNRVEIAANLE 324 >gi|283851671|ref|ZP_06368950.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio sp. FW1012B] gi|283573001|gb|EFC20982.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio sp. FW1012B] Length = 444 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 94/175 (53%), Gaps = 15/175 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQIND 144 E+ ++ + S D L+ L N F + L E +++ DID+FK++ND Sbjct: 272 EMLEYIQKLRETSIRDPLTSLYNRRHFFEAAKDLHGRLTRGEEPMTLAMLDIDHFKKVND 331 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH VGD+V+ ++ L F V RLGGEEF A G ++A + NDLR IE Sbjct: 332 TYGHAVGDEVLKHVAHGLGNRFRGHDVVARLGGEEFCVLATGMEGEQALAVFNDLRNSIE 391 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRVV 256 S+ + ++ +TIS G+ C K P+ ++ + AD ALY AK++GRN+VV Sbjct: 392 RSKAK-AGKTAVGVTISIGL---CDK-PLGSVDAMLAAADAALYKAKRTGRNKVV 441 >gi|262280968|ref|ZP_06058751.1| ggdef domain/eal domain-containing protein [Acinetobacter calcoaceticus RUH2202] gi|262257868|gb|EEY76603.1| ggdef domain/eal domain-containing protein [Acinetobacter calcoaceticus RUH2202] Length = 684 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + ++ LS D L+ L N +S ++K++ ++ D+D FK +ND Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH +GD+++ ++++L + R+GG+EF A ++ E+ +LA + ++I+ Sbjct: 306 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTNADESVVLAEKVLQLIQ 365 Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S QI SG I+I+ S G+A H + + ++ AD A+ ++K+ GRN FS Sbjct: 366 ESYQI---SGKEINISASLGVALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTIFS 419 >gi|258626404|ref|ZP_05721251.1| GGDEF family protein [Vibrio mimicus VM603] gi|258581456|gb|EEW06358.1| GGDEF family protein [Vibrio mimicus VM603] Length = 440 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 20/165 (12%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L + S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQEQARLVRWQLNQFSVLFIDIDYFKQVNDVYGHGIGDDL 331 Query: 155 IAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + + V+V + + R GGEEF + +A LA+ LR +EN + Sbjct: 332 LR----EFVLVISSEIRESDRLVRWGGEEFVVFCAQTGIDQAVDLADRLRIRVENHSW-L 386 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G +T S GIA+ E ++ + RAD+ALY AK+ GRNR+ Sbjct: 387 HGG---ELTCSIGIAQ-MENERVTETVSRADEALYRAKRLGRNRI 427 >gi|239909078|ref|YP_002955820.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239798945|dbj|BAH77934.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 434 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 73/161 (45%), Gaps = 11/161 (6%) Query: 102 QLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 L+ D L+ LN A + Y S+ DID+FK IND+ GH GD V Sbjct: 267 DLANRDPLTRTLNRRKLGDVLEAETARAARYATPFSLALLDIDHFKHINDSHGHDAGDAV 326 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L+ ++ + R GGEEF AA G AA LA LR+ + + Sbjct: 327 LVELARRITASLRQVDRLARFGGEEFVVAAPGIDLAGAAELAERLRRAVADEPFAGVG-- 384 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G+A + +I RAD ALY AK GRNRV Sbjct: 385 --RVTASFGLAAWRPGDKPEDLIKRADAALYRAKDGGRNRV 423 >gi|157158903|ref|YP_001462259.1| diguanylate cyclase [Escherichia coli E24377A] gi|157160550|ref|YP_001457868.1| diguanylate cyclase [Escherichia coli HS] gi|157066230|gb|ABV05485.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli HS] gi|157080933|gb|ABV20641.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli E24377A] gi|320200258|gb|EFW74846.1| Sensory box/GGDEF domain protein [Escherichia coli EC4100B] gi|323962799|gb|EGB58376.1| GGDEF domain-containing protein [Escherichia coli H489] Length = 476 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 429 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 465 >gi|153836224|ref|ZP_01988891.1| ggdef family protein [Vibrio parahaemolyticus AQ3810] gi|149750499|gb|EDM61244.1| ggdef family protein [Vibrio parahaemolyticus AQ3810] Length = 658 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 11/162 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157 +RID L+ LN +A I ++ S K + D+D FK IND +GHP D V+ Sbjct: 483 ARIDSLTCALNRTAIIETIKSQTSKTHQEMRYVLALIDLDNFKAINDTYGHPTRDLVLKH 542 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + + V ++GRLGGEEF E + L K I QI + Sbjct: 543 VCQSIRVKLNKGEYIGRLGGEEFVLLLKNVDEIDVPFRVQSLHKTISEKQIKTERNEDLR 602 Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256 +T A +A P++ +Y DQALY AK++G+N VV Sbjct: 603 VT--ASLAYLSTSMPLTNFDELYSILDQALYQAKRNGKNAVV 642 >gi|330973807|gb|EGH73873.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 534 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 115/259 (44%), Gaps = 33/259 (12%) Query: 23 SPHTFMIYFSIFFSIFIATVIFIANIFLFYI--------GLTPFYGLEYILVENLSLVII 74 SPH Y ++ ++ +A + F + GL Y ++ E V+ Sbjct: 6 SPHMVRKYLYTLLWFYVLSIFLLAIAWEFELESLAMAAMGLP--YDQDFENAERWRFVLT 63 Query: 75 SI---TISLLLGYIS-GSILKELFISYNRI-------SQLSRIDCLSGLLN----HSAFI 119 S +S+++ +I ++++L SYN + L+R D LSGLLN H + Sbjct: 64 STGFAVLSMVIPFILLKRLMQQLHSSYNDLLESQALSESLARHDPLSGLLNRRVFHEQLV 123 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178 + L + ++ D+D K IND GH GD I +++ L G V RLGG+ Sbjct: 124 ARLQQPATQTAVFLIDLDKIKLINDTHGHAAGDAAICAVAESLRDATVGWQASVARLGGD 183 Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPIST 235 EF A G S E A LA ++ I S + + P + ++ + G IA +P Sbjct: 184 EFGLAVSGDFSHAELAPLAENILAKIAASSVGL---PRVALSATLGIAIAPMDGSDP-DL 239 Query: 236 IIYRADQALYVAKKSGRNR 254 ++ RAD A+Y K GR R Sbjct: 240 LLQRADSAMYRGKAGGRAR 258 >gi|326388704|ref|ZP_08210297.1| diguanylate cyclase with PAS/PAC sensor [Novosphingobium nitrogenifigens DSM 19370] gi|326206955|gb|EGD57779.1| diguanylate cyclase with PAS/PAC sensor [Novosphingobium nitrogenifigens DSM 19370] Length = 599 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 8/174 (4%) Query: 89 ILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQ 141 I++++ + R IS+ + D L+G+LN + F L + E S+ D+D FK Sbjct: 423 IMRDITVRKAREVAISKRAETDDLTGVLNRAGFHQRLNLAIETSEEPFSLALIDVDRFKS 482 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND +GHPVGD + + ++ VGRLGG+EF A +A + + Sbjct: 483 INDTYGHPVGDAALIEIVRRMKTGTRKGDVVGRLGGDEF-AILFRCEMAKAETICKRITG 541 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ I+ + + +IS G+A+ ++ AD ALY AK SGRN V Sbjct: 542 LVSTDPIHANDNVLLLTSISCGVAQFAPGMSREQLVDAADLALYQAKDSGRNGV 595 >gi|323524509|ref|YP_004226662.1| diguanylate cyclase [Burkholderia sp. CCGE1001] gi|323381511|gb|ADX53602.1| diguanylate cyclase [Burkholderia sp. CCGE1001] Length = 509 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 17/212 (8%) Query: 63 YILVENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSA 117 Y+ + +I S+ +L L I+ ++L + + + + L+R D L+G+ N A Sbjct: 282 YVGWRRRAWIIGSLIAALDLTLIALAVLFAQQMRRRLAAEDELRMLARTDGLTGVDNRRA 341 Query: 118 FISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 F ++ + + LS++ D+D FK ND +GH GD + ++ + P Sbjct: 342 FEQAVENEWRRAQRHGGPLSMLLIDVDSFKGFNDLYGHSAGDDALITVAHSIAGNVQRPG 401 Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 R GGEEFA + E A +A +R +E I + +T+S G+A Sbjct: 402 DTAARYGGEEFAVLLPDTDEAGATSIAEKIRAAVEALAIRHVASSHHVLTVSIGVAT-MQ 460 Query: 230 KEPIST---IIYRADQALYVAKKSGRNRVVCF 258 E ST ++ ADQALY AK +GRNRV + Sbjct: 461 GEAFSTSRGLVEAADQALYAAKDAGRNRVFSY 492 >gi|256018713|ref|ZP_05432578.1| putative diguanylate cyclase [Shigella sp. D9] gi|323181285|gb|EFZ66778.1| diguanylate cyclase domain protein [Escherichia coli 1357] Length = 264 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 15/161 (9%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 97 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 156 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF + A LA +R+ +E N + I + Sbjct: 157 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ--KV 214 Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 I+I A + + P IYR AD ALY AK++GRN+VV Sbjct: 215 TISIGAVVTQENALNPNE--IYRLADNALYEAKETGRNKVV 253 >gi|229521336|ref|ZP_04410755.1| GGDEF family protein [Vibrio cholerae TM 11079-80] gi|229341434|gb|EEO06437.1| GGDEF family protein [Vibrio cholerae TM 11079-80] Length = 372 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++L+ ++ LS D L+GL N + L + V DID FK +N Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDSQQPFVCVMIDIDGFKAVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH VGDKV+ +++ L F + V RLGG+EF + +A + + I Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETDTAGGVYIAEQVCRAI 312 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I++ + ++S G+A + H E ++ ADQA+Y+AK SG+NRV F Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368 >gi|226306989|ref|YP_002766949.1| hypothetical protein RER_35020 [Rhodococcus erythropolis PR4] gi|226186106|dbj|BAH34210.1| hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 471 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 113/250 (45%), Gaps = 25/250 (10%) Query: 28 MIYFSIFFSIFIATVIFIANI-FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86 ++ ++ ++F+ +V+ A+ + + GL E +S V S+ I L L ++ Sbjct: 226 LVTAALLTNVFVTSVLTAASTAWTLVLTADGHLGLSS---EGVSPVSASVQIGLSLLAVA 282 Query: 87 ----GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN----------EKLSIV 132 ++ E + ++Q D L+G L F+ GS +S++ Sbjct: 283 PIAVACVILERRRALEALTQAVTHDDLTGALRRDEFLRRGGSVTGAPDPRRHSGRPVSVL 342 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK +NDN GH GD + +DQ+ RLGGEEF G + A Sbjct: 343 MMDLDHFKMVNDNLGHRAGDTALVSFADQVRRNLDDKHLFARLGGEEFVVLMAGVDLEGA 402 Query: 193 AILANDLRKI-IENSQINISS-GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKK 249 A +R+ ENS + GP T+S G+A H + ++ ++ AD+ALY AKK Sbjct: 403 TETAEMIRRAQAENSSAVLGELGP----TVSIGVACSPHGDADLTQLVDCADEALYRAKK 458 Query: 250 SGRNRVVCFS 259 RNR V + Sbjct: 459 LDRNRTVALT 468 >gi|220905630|ref|YP_002480942.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869929|gb|ACL50264.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 554 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 22/199 (11%) Query: 81 LLGYISGSILK-------------ELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122 L G ++G ILK +L +Y + +++ D L+GLLN A L Sbjct: 350 LTGMVNGFILKLKDDETALREEKNKLDDAYKELERVAYYDFLTGLLNRRAMYERLEKEFS 409 Query: 123 GSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + E L +V DID+FK +ND +GH GD V+ +++ R GGEEF Sbjct: 410 RAQREGLQFCLVLADIDHFKVVNDTYGHDAGDVVLQSIAEIFQNNIRQEDCASRWGGEEF 469 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 A+ ++ LA LRK +E++ I I + I++TI+ G+ E + ST+I A Sbjct: 470 LILAISCGLEDGLSLAEKLRKAVEDTPIRIGAA-IINVTITLGVVEYTKGKSFSTLIKEA 528 Query: 241 DQALYVAKKSGRNRVVCFS 259 D LY K+ RN V+ S Sbjct: 529 DFYLYEGKRQ-RNCVMSSS 546 >gi|187935634|ref|YP_001884962.1| ggdef domain protein [Clostridium botulinum B str. Eklund 17B] gi|187723787|gb|ACD25008.1| ggdef domain protein [Clostridium botulinum B str. Eklund 17B] Length = 1755 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 104 SRIDCLSGLLNHS----AF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S +D L+G+ N AF I S S++ FDID FK +ND +GH GD+V+ Sbjct: 1419 STLDKLTGVYNRKYLEKAFCDLIDDSYSKGRLFSLIIFDIDDFKGVNDRYGHQTGDEVLI 1478 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L+ ++ R GGEEF +E EA + + +R ++ ++I G Sbjct: 1479 KLTQEVKNCLSKEDVFVRYGGEEFIILLPDKNEDEAYLFSEKIRNKVDCAKI---LGEKR 1535 Query: 217 HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +TIS GI+ H +I ADQALY +K G+N+ ++D Sbjct: 1536 KVTISLGISVYLKHSSNSEDLIKMADQALYTSKAQGKNKTTIWND 1580 >gi|169797220|ref|YP_001715013.1| hypothetical protein ABAYE3236 [Acinetobacter baumannii AYE] gi|213155986|ref|YP_002318031.1| ggdef domain/eal domain protein [Acinetobacter baumannii AB0057] gi|215484661|ref|YP_002326896.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii AB307-0294] gi|239500742|ref|ZP_04660052.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii AB900] gi|301512846|ref|ZP_07238083.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii AB058] gi|301594190|ref|ZP_07239198.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii AB059] gi|332851275|ref|ZP_08433348.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013150] gi|332866144|ref|ZP_08436859.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013113] gi|169150147|emb|CAM88041.1| conserved hypothetical protein; putative membrane protein [Acinetobacter baumannii AYE] gi|193076343|gb|ABO10999.2| putative membrane protein [Acinetobacter baumannii ATCC 17978] gi|213055146|gb|ACJ40048.1| ggdef domain/eal domain protein [Acinetobacter baumannii AB0057] gi|213988225|gb|ACJ58524.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii AB307-0294] gi|332730155|gb|EGJ61482.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013150] gi|332734785|gb|EGJ65879.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013113] Length = 684 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + ++ LS D L+ L N +S ++K++ ++ D+D FK +ND Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH +GD+++ ++++L + R+GG+EF A + +EA LA + +I+ Sbjct: 306 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLHLIQ 365 Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S QI SG I+I+ S GIA H + + ++ AD A+ ++K+ GRN FS Sbjct: 366 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 419 >gi|170020575|ref|YP_001725529.1| diguanylate cyclase [Escherichia coli ATCC 8739] gi|169755503|gb|ACA78202.1| diguanylate cyclase [Escherichia coli ATCC 8739] Length = 452 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441 >gi|157960094|ref|YP_001500128.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157845094|gb|ABV85593.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 456 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 124/276 (44%), Gaps = 39/276 (14%) Query: 18 NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYG----------------- 60 LE F M+ I F + IA ++ A + L+PF G Sbjct: 177 GLEQFYGQMSMLTAFIGFVLAIAALMMTAKVGGVNAILSPFIGGKIARRQTAAGYFVPAI 236 Query: 61 LEYILVENLS----------LVIISITISLLLGYISGSILKELFISYNRISQLSRI---- 106 L Y+L+++L +V I + L++ Y S +++ + ++ QL + Sbjct: 237 LGYLLIKSLCAIDGELCGIFVVTICWFVILMISY-SALFQEKMDLERRQMEQLLTLAAMN 295 Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F ++ + + ++ D+D+FK+IND GH +GD+V+ LS Sbjct: 296 DQLTGLANRRKFHEFAQEELNRVQRNKSQFWVLVMDVDFFKKINDTAGHDMGDQVLIELS 355 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R+GGEEF+ +++Q A +A +R IE+ +I + IT Sbjct: 356 KVLKNSVRAVDLVSRMGGEEFSIILSDTTKQGAERVAESIRSSIESIKIKGWTDIYGPIT 415 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G A + + + AD ALY AK+ GRN+V Sbjct: 416 ASIGGATSDGADKLENTLKIADSALYQAKQRGRNQV 451 >gi|172063342|ref|YP_001810993.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria MC40-6] gi|171995859|gb|ACB66777.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia ambifaria MC40-6] Length = 516 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLN----HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVG 151 I L+R D L+GL N H+ L + L++++ D+D FK IND FGH G Sbjct: 338 IRHLARHDALTGLPNRHELHAELRRRLAHRPRVPSPALAVMYLDLDGFKAINDRFGHQAG 397 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++++L R+GG+EF A ++ Q +ILA + + I ++ +S Sbjct: 398 DEVLTQVAERLGKTLPPGELAARIGGDEFVVAIDDTTMQACSILAARIIRQI-SAPYTLS 456 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 G ++ + IS GIA + H P +I +AD ALY AK G+ Sbjct: 457 IGATVSLGISIGIALDDGHGSP-DELIRQADSALYDAKSGGKG 498 >gi|152985233|ref|YP_001345645.1| hypothetical protein PSPA7_0249 [Pseudomonas aeruginosa PA7] gi|150960391|gb|ABR82416.1| hypothetical protein PSPA7_0249 [Pseudomonas aeruginosa PA7] Length = 275 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L NE+ + D+D+FKQ+ND +GH GD+V+ ++ Sbjct: 103 DPLTGLPNRRMLLERLREENERSQRHGQSYVLAMLDVDFFKQVNDTWGHDSGDRVLVEIA 162 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + GR GGEEF + Q+A + +R + + + + ++ +T Sbjct: 163 RAMESELREYDLCGRWGGEEFLLLLPQTRLQDAGPVLERVRDSVRTLAVRVGT-EALSVT 221 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+ E E S + RAD AL AK+SGR++ V Sbjct: 222 ASVGVTEHRIGETYSQTVNRADAALLDAKRSGRDKCV 258 >gi|89094637|ref|ZP_01167574.1| PAS:GGDEF domain protein [Oceanospirillum sp. MED92] gi|89081107|gb|EAR60342.1| PAS:GGDEF domain protein [Oceanospirillum sp. MED92] Length = 421 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 107/223 (47%), Gaps = 33/223 (14%) Query: 69 LSLVIISITISLLLGYI-------SGSILKELFISYNRISQ-------LSRIDCLSGLLN 114 L L++ T++L+ GY + +L +++ RIS+ L+ D L+GL N Sbjct: 182 LMLMLAICTMTLITGYAIWRFTSNRSKYINKLAVAHQRISEQNAQLKELAHTDQLTGLPN 241 Query: 115 HSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 +S + + LS+ F D+D+FK IND FGH VGDKV++ + + Sbjct: 242 RKMLEAITNQALSRVQRKHSVLSLTFIDLDFFKPINDEFGHNVGDKVLSNFTKAITTQLR 301 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS----SGPS-IHITISA 222 + RL G+EF L E+ L L II Q+ + S PS IHI SA Sbjct: 302 DGDVLARLAGDEF---ILLIQEESEDALKEALDNIIARIQLRLEEPIISAPSEIHIRCSA 358 Query: 223 GIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIEN 263 G A ++ I +++ ADQA+Y +K GR + C+ + E+ Sbjct: 359 GTA-FAPRDAIEFEMLLHCADQAMYESKNRGRGQ-HCYYEPES 399 >gi|332995083|gb|AEF05138.1| diguanylate cyclase [Alteromonas sp. SN2] Length = 634 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 16/199 (8%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------ 120 +N+ LV + + +LLL ++ + + ++ LS D L+GL N F Sbjct: 436 KNMMLVGVVVIFALLLIFVVFQ-----YKNSRKLLALSIRDDLTGLHNRRYFFDYFEHNL 490 Query: 121 -SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 L + L+++ FDID FK INDN GH VGD+VI ++ T + R+GG+E Sbjct: 491 VKLNPSHVGLALISFDIDNFKHINDNLGHHVGDEVIKTVAHTAANTLRTNDVIARIGGDE 550 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE----PIST 235 F A ++ +A +A + + I + + G +T S G+A + + + Sbjct: 551 FIIALPRTTLLQAKEIAKRILENIRSHRFTTKEGADFSVTASLGVAYHHQNKLIALDVKS 610 Query: 236 IIYRADQALYVAKKSGRNR 254 ++ AD ALY +K++G+NR Sbjct: 611 MMESADTALYQSKRAGKNR 629 >gi|330448353|ref|ZP_08312001.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492544|dbj|GAA06498.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 350 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRI---DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146 Y+ I Q+ R D L+GLLN F+ S Y +S++ DID ++IND F Sbjct: 179 YDAIKQVKRTTTHDYLTGLLNREGFVPLYLTESSRCQRYRRDISMLLLDIDNLREINDRF 238 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 G GDK I L+ L G + RL +EF + Q+A +A LR + Sbjct: 239 GLDAGDKTIMMLAKCLNEHCGDKAKISRLSCQEFCILLPDADIQKAEFMAIQLRNEVAKW 298 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + +G I+ITIS GI +++ I +A+ AL AK+ G N++ Sbjct: 299 SLELETGHRINITISVGITAVEYQDFRYDYI-KAESALMRAKRWGYNQI 346 >gi|320352178|ref|YP_004193517.1| response regulator receiver modulated diguanylate cyclase [Desulfobulbus propionicus DSM 2032] gi|320120680|gb|ADW16226.1| response regulator receiver modulated diguanylate cyclase [Desulfobulbus propionicus DSM 2032] Length = 437 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 107 DCLSGLLN----HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N AF + +S +FFD+D+FKQ+ND GH GD V+ + Sbjct: 276 DALTGLRNKRYFQEAFEEAFARAQRIGIDVSCLFFDLDHFKQVNDTCGHGFGDYVLKTVG 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + R GGEEF A + +A +A +R++I G +T Sbjct: 336 ALIKETVRRGDLAARFGGEEFVVALPNTDLGQAKCVAEKIRRLIAAHPFR-DQGLQWRVT 394 Query: 220 ISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 +S G+A P S ++ ADQALY AK++GR+RV Sbjct: 395 VSIGVASLLSARPSSACGLLQLADQALYRAKRAGRDRV 432 >gi|229529548|ref|ZP_04418938.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|229333322|gb|EEN98808.1| GGDEF family protein [Vibrio cholerae 12129(1)] Length = 527 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 493 YLSKSKGRNRV 503 >gi|192360288|ref|YP_001982075.1| hypothetical protein CJA_1595 [Cellvibrio japonicus Ueda107] gi|190686453|gb|ACE84131.1| putative membrane protein [Cellvibrio japonicus Ueda107] Length = 380 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 9/157 (5%) Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ LLN F + + ++ S F DID+FK +NDN+GH GDKV+ +S Sbjct: 227 DSLTHLLNRRGFFEAAKDFMGSDATSRYFLLTCDIDHFKNVNDNWGHLAGDKVLQAVSKA 286 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 ++ V R GGEEF +A +A +R+ IEN+ S I IT S Sbjct: 287 IIKNVRKGDLVARFGGEEFVIFLRSIDINDARKIAERIREEIENTTY---SAIPICITAS 343 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G+ + + + + I RAD LY AK++GRN+ VC+ Sbjct: 344 FGLVDIVPNQDLVSAIDRADALLYNAKQNGRNQ-VCW 379 >gi|297583734|ref|YP_003699514.1| GAF sensor-containing diguanylate cyclase [Bacillus selenitireducens MLS10] gi|297142191|gb|ADH98948.1| diguanylate cyclase with GAF sensor [Bacillus selenitireducens MLS10] Length = 580 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 21/191 (10%) Query: 89 ILKELFISYNRISQLSR-----IDC-LSGLLNHSAFISSLGSY----NEKLSIVFFDIDY 138 +L L +S N L R + C L+ L N+ F +L + ++ +++ D+D+ Sbjct: 376 LLNHLTVSINNARHLERAQKESMQCALTKLHNYRFFERTLQEHYEGNDDDFAVILLDLDH 435 Query: 139 FKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 FK +ND FGH G++V+ ++ L V G V R GGEEF ++ ++A A Sbjct: 436 FKSVNDRFGHSAGNQVLHQVARTLESAVTSGKAYTVARYGGEEFVILLDQTTAEDATDQA 495 Query: 197 NDLRKIIENSQINI-----SSGPSIHITISAGI---AERCHKEPISTIIYRADQALYV-A 247 +R+ +E + ++ G + +T++A I A R E I+ AD+A+Y A Sbjct: 496 EQIRQTLEETVFHVDDDLQQGGQTKALTLTASIGVAARRADDEDPLGIVRNADRAMYTGA 555 Query: 248 KKSGRNRVVCF 258 K +GRN+V + Sbjct: 556 KNNGRNKVAVY 566 >gi|85859612|ref|YP_461814.1| response regulator [Syntrophus aciditrophicus SB] gi|85722703|gb|ABC77646.1| response regulator protein with GGDEF domain [Syntrophus aciditrophicus SB] Length = 355 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 9/185 (4%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132 +L+ YI+ ++ N+I +S D L+G+ N YN LS++ Sbjct: 168 VLVAYITTMFASDIRYGLNKIKLMSETDELTGIYNRRGLAIIADRLFGHTVRYNRPLSLL 227 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D D K++ND++GH GD+++ L + + + R GG+EF + A Sbjct: 228 AIDSDNMKRVNDDYGHKAGDQLLVTLVNTIQAQLRHSDILARQGGDEFVVLLPETPSTGA 287 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251 +A +RK +EN+ + + G + T+S G+A + ++ +AD +Y AK G Sbjct: 288 LDVAERIRKAVENTPL-VLDGKIVRTTVSIGVASYPSEGHSLDVLLAQADFKMYEAKLGG 346 Query: 252 RNRVV 256 RN+VV Sbjct: 347 RNKVV 351 >gi|77463595|ref|YP_353099.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides 2.4.1] gi|77388013|gb|ABA79198.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides 2.4.1] Length = 833 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 12/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++R D L+GL N F ++SL ++++ D+D FK +ND GHPVG Sbjct: 393 QVFHMARHDMLTGLPNRHYFGDCYQEAVASLAP-ERSVAVLMLDLDGFKTVNDTRGHPVG 451 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210 D+V+ ++++L + V RLGG+EFA SEQEA LA R I S+ Sbjct: 452 DQVLCEVANRLRTSVRSTDTVARLGGDEFAVIQTPIRSEQEACDLAR--RLIAAISKPFD 509 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + S GIA R H + I+ AD ALY AK++GR F + Sbjct: 510 LEGAVPEVGASVGIAFARGHGDSAEEIMRYADVALYAAKQAGRGTFRVFDE 560 >gi|27376066|ref|NP_767595.1| hypothetical protein bll0955 [Bradyrhizobium japonicum USDA 110] gi|27349205|dbj|BAC46220.1| bll0955 [Bradyrhizobium japonicum USDA 110] Length = 955 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 10/162 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-YNE------KLSIVFFDIDYFKQINDNFGHPVG 151 R++ ++R D L+ L N + F +G N+ ++++ FD+D FK +ND GH G Sbjct: 524 RVAHMARHDSLTDLPNRTLFREKMGEGLNQVAIAGGAMAVLCFDLDNFKTVNDRLGHAAG 583 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ +++ +L G V RLGG+EFA G Q A LA L +II + S Sbjct: 584 DRLLRWVAARLKENVGEHDTVARLGGDEFAVLQRGPQPQSAEKLARRLVEIIGHPPPLES 643 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252 SIH+ +S GIA H ++ AD ALY AK GR Sbjct: 644 Q--SIHVGVSVGIAIAPDHGLDADELMKCADLALYQAKARGR 683 >gi|309701300|emb|CBJ00601.1| predicted diguanylate cyclase [Escherichia coli ETEC H10407] Length = 449 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441 >gi|296101507|ref|YP_003611653.1| diguanylate cyclase AdrA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055966|gb|ADF60704.1| diguanylate cyclase AdrA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 367 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 25/202 (12%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128 L+L ++ I +L ++S L + ++ +S D ++G+ N + + L EK Sbjct: 172 LTLPVLMI-YPILFAWVSHQTAIRLAENKRKLELMSTRDGMTGVYNRRHWETLLRMEYEK 230 Query: 129 -------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +I+ DID+FK IND +GH VGD+ I ++ QL + ++GR GG+EFA Sbjct: 231 CRRDHCQTTILLIDIDHFKSINDTWGHDVGDEAIIAITRQLQMTLRAGDYIGRFGGDEFA 290 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--Y 238 G+ E+AI A + ++ E ++++ P+ + IS G+A P T Y Sbjct: 291 IIMSGTP-AESAIAA--MSRVHERLKKLSLPCAPNERLRISVGVA------PWGTQFAHY 341 Query: 239 R-----ADQALYVAKKSGRNRV 255 R AD ALY AK +GR R Sbjct: 342 REWLKAADIALYKAKNAGRGRT 363 >gi|288959268|ref|YP_003449609.1| two-component response regulator, modulated diguanylate cyclase [Azospirillum sp. B510] gi|288911576|dbj|BAI73065.1| two-component response regulator, modulated diguanylate cyclase [Azospirillum sp. B510] Length = 310 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 17/170 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + LS +D L+G+ N F +L G + LS+V D+D+FK ND++GH GD Sbjct: 131 LRSLSFLDGLTGIANRRRFDDALRREWRRCGRSHLPLSLVILDVDHFKAYNDHYGHQSGD 190 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + + ++D L P V R GGEEF + + A LA R + + +I + Sbjct: 191 ECLRIVADVLSERARRPSDLVARYGGEEFVCLLPETDGEGAVRLAEGFRAGVADRRIPHA 250 Query: 212 SGP-SIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + ++TIS G+A + E ++ I ADQ LY AK++GRNRV Sbjct: 251 QSPVAPYVTISLGVATVIPSDEGGPERLAEI---ADQLLYRAKRAGRNRV 297 >gi|194438098|ref|ZP_03070191.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1] gi|194423034|gb|EDX39028.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 101-1] Length = 476 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 429 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 465 >gi|148265332|ref|YP_001232038.1| diguanylate cyclase [Geobacter uraniireducens Rf4] gi|146398832|gb|ABQ27465.1| diguanylate cyclase [Geobacter uraniireducens Rf4] Length = 603 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 85/174 (48%), Gaps = 17/174 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----------SIVFFDIDYFKQINDNF 146 N + + S D L+GL N L Y EKL ++ D+DYFKQ+ND + Sbjct: 426 NTLRESSLKDPLTGLHNRRF----LQEYTEKLVAGAKRRRTLVGLIMCDLDYFKQVNDAY 481 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH VGD V+ + + V R GGEEF +A +A +R ++N+ Sbjct: 482 GHNVGDIVLRETASIIRTSVREADIVVRFGGEEFLVVLFDIGAGDALNVAEKIRVNVQNA 541 Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +I I G I TIS G++E E I AD ALY AK++GRN+V+ F+ Sbjct: 542 RIKIPEG-VIQKTISLGVSEFPADSETFWHSIKYADVALYKAKEAGRNKVMRFT 594 >gi|126173611|ref|YP_001049760.1| diguanylate cyclase [Shewanella baltica OS155] gi|125996816|gb|ABN60891.1| diguanylate cyclase [Shewanella baltica OS155] Length = 518 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + + L + DID+FK IND+FGH GDK Sbjct: 354 QKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWVAVADIDHFKTINDSFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF + + A L N +R+ ++N + Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLLPDVAPADIAQLLNRVREKVKNIPFKFKNQ 473 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A+ E I RAD ALY AK R+RVV Sbjct: 474 -RITVTVSIGAAQVMGSELIHETFERADAALYKAKHESRDRVV 515 >gi|332874050|ref|ZP_08441985.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6014059] gi|322506769|gb|ADX02223.1| EAL domain-containing protein [Acinetobacter baumannii 1656-2] gi|323516639|gb|ADX91020.1| EAL domain-containing protein [Acinetobacter baumannii TCDC-AB0715] gi|332737791|gb|EGJ68683.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6014059] Length = 684 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + ++ LS D L+ L N +S ++K++ ++ D+D FK +ND Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH +GD+++ ++++L + R+GG+EF A + +EA LA + +I+ Sbjct: 306 AFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLHLIQ 365 Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S QI SG I+I+ S GIA H + + ++ AD A+ ++K+ GRN FS Sbjct: 366 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 419 >gi|293401537|ref|ZP_06645680.1| putative diguanylate cyclase (GGDEF) domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305175|gb|EFE46421.1| putative diguanylate cyclase (GGDEF) domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 829 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 8/158 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFIS--SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVI 155 + + S +D L+ + N +AF L +K F DIDYFK++ND FGH +GD+V+ Sbjct: 670 LEKKSMMDALTSVYNTAAFKKKIQLELVRDKGMYAFGVLDIDYFKEVNDEFGHFIGDQVL 729 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +D + FG +GRLGG+EFA + ++ A +AN ++ + Q I P+ Sbjct: 730 IHCADVMQKAFGEKALIGRLGGDEFAVFLMAPQDENA--VANGCARLQKALQTTIEGLPN 787 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 IT+S G + + +AD+ LY K +GRN Sbjct: 788 --ITLSMGFVMTKDVCDYNILYQKADKVLYEVKAAGRN 823 >gi|260683836|ref|YP_003215121.1| putative signaling protein [Clostridium difficile CD196] gi|260687496|ref|YP_003218630.1| putative signaling protein [Clostridium difficile R20291] gi|260209999|emb|CBA64027.1| putative signaling protein [Clostridium difficile CD196] gi|260213513|emb|CBE05232.1| putative signaling protein [Clostridium difficile R20291] Length = 408 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 110/245 (44%), Gaps = 30/245 (12%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFIS 96 F +VI FLF P G++ I S ++ + I+ L ++S + + +F Sbjct: 164 FGESVIVFGGCFLFLNLFLP--GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTY 221 Query: 97 YNRI---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFF 134 Y+++ Q I ++ LLN L N E ++ + Sbjct: 222 YDKLLISQQYEEISHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMI 281 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEA 192 DIDYFKQ NDN+GH GD + ++ ++++ F + R GGEEF E +A Sbjct: 282 DIDYFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCDETDA 340 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKS 250 + + LRKIIE+ P +T+S G+ + ++ I+ I D+ALY AK+ Sbjct: 341 KLKSECLRKIIESCNFERDDVPLKCVTVSIGVYTKKIEKAITLNEFISNCDKALYTAKEQ 400 Query: 251 GRNRV 255 GRN V Sbjct: 401 GRNCV 405 >gi|281412997|ref|YP_003347076.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga naphthophila RKU-10] gi|281374100|gb|ADA67662.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga naphthophila RKU-10] Length = 643 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 15/170 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 RI L+ D L+G+ N AF S L Y+ KLS VF D+D FK+IND+ GH V Sbjct: 477 ERILWLAERDSLTGVYNREAFESRLAYLINLSKRYSRKLSFVFIDLDDFKRINDSKGHLV 536 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++L + VGRLGG+EF + A IL +++I E+ + ++ Sbjct: 537 GDRVLKEFVNRLTSLLRKSDVVGRLGGDEFGIILPETDRTGAEIL---MKRIEEHFRESV 593 Query: 211 S-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYV---AKKSGRNRV 255 G + S GI+ E + ++ AD+ +Y+ +KK GR V Sbjct: 594 PVDGELFSVNFSYGISVFPEDGESVEELLKVADERMYMNKFSKKRGRENV 643 >gi|226365224|ref|YP_002783007.1| hypothetical protein ROP_58150 [Rhodococcus opacus B4] gi|226243714|dbj|BAH54062.1| hypothetical protein [Rhodococcus opacus B4] Length = 614 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 14/190 (7%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIV 132 I+ LL + I+ E + Y+ + D L+GL N A L S ++I+ Sbjct: 163 IAALLAQVQARIVVEEQLRYS-----ADHDSLTGLSNRRALYHHLDTRLASSEPGPVAIL 217 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191 F D+D K +ND FGH GD I+ ++D+L V RLGG+EF GS +E Sbjct: 218 FLDLDRLKPLNDFFGHGAGDGFISTIADRLRSTSDADDLVSRLGGDEFVLVLGGSVGLEE 277 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKS 250 A + A +R ++ ++ + + ++S G+A C K S+++ +ADQA+ VAK Sbjct: 278 AEVRAQHIRDVV-TERVRLGR-EVVSRSVSIGVAAGCPGKATTSSLLSQADQAVMVAKTK 335 Query: 251 GRNRVVCFSD 260 G N + F+D Sbjct: 336 GGNAISVFTD 345 >gi|254503088|ref|ZP_05115239.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222439159|gb|EEE45838.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 301 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 85/156 (54%), Gaps = 6/156 (3%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFF----DIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G+ N + + + + S +F DID+FK +ND +GH +GD+V+ ++ + Sbjct: 143 DSLTGIYNRRYLEAEFAARHSRPSPKYFLALLDIDHFKNVNDTYGHIIGDQVLKLVATAI 202 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSI-HITI 220 + + + R GGEEFA + E E A + +R + ++ +N G +I +T+ Sbjct: 203 KSLIRSQDVLCRYGGEEFAILFDSADETECADVVERVRLGVTKHKLVNRKQGHTIGSVTL 262 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SAG+A + T + R D+ LY AK++GR+R+V Sbjct: 263 SAGLALVEPDDDFDTALERVDRLLYKAKQAGRDRLV 298 >gi|217974144|ref|YP_002358895.1| diguanylate cyclase [Shewanella baltica OS223] gi|217499279|gb|ACK47472.1| diguanylate cyclase [Shewanella baltica OS223] Length = 518 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + + L + DID+FK IND+FGH GDK Sbjct: 354 QKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWVAVADIDHFKTINDSFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF + + A L N +R+ ++N + Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLLPDVAPADIAQLLNRVREKVKNIPFKFKNQ 473 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A+ E I RAD ALY AK R+RVV Sbjct: 474 -RITVTVSIGAAQVMGSELIHETFERADAALYKAKHESRDRVV 515 >gi|146309057|ref|YP_001189522.1| diguanylate cyclase [Pseudomonas mendocina ymp] gi|145577258|gb|ABP86790.1| diguanylate cyclase [Pseudomonas mendocina ymp] Length = 366 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 9/169 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 ++ + +L++ D L+G+ + +F +L ++ L +V D+D+FK++ND +GH Sbjct: 182 AHEELERLAQTDSLTGVASRGSFQHALQRSIQEAERSSGHLVLVLLDVDHFKEVNDRWGH 241 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD + + L F+GRLGGEEF + A L LR+ + + Sbjct: 242 EAGDMALQHICQMLQQRLRVTDFLGRLGGEEFGLLLRHTDSTGAGPLVETLRRQLTERPL 301 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 P I ++ + G+A + +YR AD+ LY K+ GRN++V Sbjct: 302 EYHGQP-IALSATFGLAAWPEDGRSAAELYRSADRRLYRGKQRGRNQLV 349 >gi|111021686|ref|YP_704658.1| hypothetical protein RHA1_ro04714 [Rhodococcus jostii RHA1] gi|110821216|gb|ABG96500.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 399 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 8/155 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GLLN +A L E + +F D+D FK +ND GH VGD+++ +S+ L Sbjct: 245 DSLTGLLNRAAITEYLQRLFEPGAGPAVALFLDVDGFKDVNDTRGHRVGDRILQGVSEHL 304 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITIS 221 P VGRLGG+EF A E + + + + +++ + I G + +TIS Sbjct: 305 RHAMRAPSAVGRLGGDEFVAILPDIDEYD---VDDVVTRMLASITTPIDVGDELLVVTIS 361 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+A + +++ AD ALY AK+ G N V Sbjct: 362 VGMARSTTARTVDELLHHADTALYAAKRRGGNTAV 396 >gi|119773757|ref|YP_926497.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119766257|gb|ABL98827.1| response regulator receiver protein [Shewanella amazonensis SB2B] Length = 378 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ +D L+GL N F I + LS++ DID+FK++ND GH GD Sbjct: 204 RMALLDGLTGLSNRRHFDEILDQEIRASTRTGHPLSLILLDIDFFKRLNDALGHQAGDDC 263 Query: 155 IAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 + L L V P + R GGEEFA ++ A +AN + K++ + I + S Sbjct: 264 LRQLGQLLSDVAARPRDLAVRYGGEEFAVLLPETTLTGAVEVANRIAKLLAKAAIPHPDS 323 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + HIT+S G+ + ++ +D ALY AK+SGRN Sbjct: 324 QVASHITVSQGLVQWQRGMDAEALLEASDAALYRAKESGRN 364 >gi|312958309|ref|ZP_07772830.1| putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain [Pseudomonas fluorescens WH6] gi|311287373|gb|EFQ65933.1| putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain [Pseudomonas fluorescens WH6] Length = 333 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 73/130 (56%), Gaps = 2/130 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK IND++GH GD+V+ +++ V GR+GGEEFAA G + Sbjct: 204 LAFLLLDIDDFKDINDSYGHLEGDQVLRRIAESGRGVLRRGDLFGRIGGEEFAAVLPGCA 263 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247 + A +A L K I+ N G + +TIS G+A + + ++ RAD A+Y A Sbjct: 264 PEMALQVAERLGKEIQALSFNY-EGRAFSVTISQGLASLTEDDATLDSLFARADTAMYEA 322 Query: 248 KKSGRNRVVC 257 K+ G+NRVV Sbjct: 323 KRLGKNRVVA 332 >gi|308125453|ref|ZP_07663403.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|308115576|gb|EFO53116.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] Length = 179 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 26/169 (15%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G +N A + L + LSI++ D+D FK+IND FGH +GD Sbjct: 9 AELAHRDALTGAMNRHAVQTWLEQQARQVRWGHSTLSILYMDLDNFKKINDKFGHQMGDD 68 Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 ++ + V+V + + R GGEEF ++ ++A A +RK N Sbjct: 69 ILR----EFVMVVASSIAPDDRLVRWGGEEFVVFCPDTNIEQAVKKAEMIRK-------N 117 Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ +H +T S G+A+ E ++ + RAD+ LY+AK++GRNRV Sbjct: 118 VANHLWVHGEALTCSIGVAQ-MQNERVTETMARADEVLYLAKRNGRNRV 165 >gi|229527378|ref|ZP_04416770.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|229335010|gb|EEO00495.1| GGDEF family protein [Vibrio cholerae 12129(1)] Length = 312 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 8/167 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS + S+ID L+ L N F S + L ++ FDID+FKQIND +GHP GD Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L R GGEEF LA +R+ +E++ + + Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDEMANVIGLAETIRRYVESNTL-MWQ 264 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+SAG A H +++ ADQAL AK+ GRNRV+ Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309 >gi|225182117|ref|ZP_03735544.1| diguanylate cyclase [Dethiobacter alkaliphilus AHT 1] gi|225167180|gb|EEG76004.1| diguanylate cyclase [Dethiobacter alkaliphilus AHT 1] Length = 352 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 94/198 (47%), Gaps = 13/198 (6%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISY---NRISQLSRIDCLSGLLNHSAFISSLG- 123 NL ++ LL+G + G I+ S+ N + Q + D L+ LLNH +F L Sbjct: 154 NLITYFSQVSFLLLMGCLGGIIVSRERQSHSEKNLLEQAANRDYLTNLLNHRSFQEHLRG 213 Query: 124 --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGRLGGE 178 N + DID FK +ND +GH GDKV+ L + V V F R GGE Sbjct: 214 DLENNSAFYLALADIDNFKLVNDKYGHVTGDKVLRELGSIINSTVSVKQGKAF--RYGGE 271 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EFA + E L +++ + N I G + +T+S G ++ +EP ++ Sbjct: 272 EFAIIIYNKEQDEVDKLLVEIKLSVAN-HIFYCEGEAFSVTMSFGSCKQNGEEP-DKLVE 329 Query: 239 RADQALYVAKKSGRNRVV 256 + D+ LY AK GRNR+V Sbjct: 330 KVDKLLYEAKDRGRNRIV 347 >gi|158425538|ref|YP_001526830.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571] gi|158332427|dbj|BAF89912.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571] Length = 306 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 81/171 (47%), Gaps = 14/171 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 RI QLS D L+G+ N F +L S + LS++ DID+FK ND++GH Sbjct: 134 ERIYQLSITDGLTGISNRRRFDEALASLVAQHARSGKPLSVILIDIDHFKAFNDHYGHLS 193 Query: 151 GDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + ++ + ++ G R GGEEFA G AA +A LR I I Sbjct: 194 GDDCLRQVAAVIASLMRGESDLAARFGGEEFACVLPGLDLAGAASVAERLRSGIAGLGIP 253 Query: 210 ISSGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRVV 256 + H+T S G C + P++ ++ AD LY AK GRNRV Sbjct: 254 HAKADGGHVTASIGAV--CCERPMAQTSHGLLATADALLYRAKGEGRNRVA 302 >gi|328473015|gb|EGF43863.1| GGDEF family protein [Vibrio parahaemolyticus 10329] Length = 445 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 26/169 (15%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G +N A + L + LSI++ D+D FK+IND FGH +GD Sbjct: 275 AELAHRDALTGAMNRHAVQTWLEQQARQVRWGHSTLSILYMDLDNFKKINDKFGHQMGDD 334 Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 ++ + V+V + + R GGEEF ++ ++A A +RK N Sbjct: 335 ILR----EFVMVVASSIAPDDRLVRWGGEEFVVFCPDTNIEQAVKKAEMIRK-------N 383 Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++ +H +T S G+A+ E ++ + RAD+ LY+AK++GRNRV Sbjct: 384 VANHLWVHGEALTCSIGVAQ-MQNERVTETMARADEVLYLAKRNGRNRV 431 >gi|307311590|ref|ZP_07591230.1| diguanylate cyclase [Escherichia coli W] gi|306908145|gb|EFN38644.1| diguanylate cyclase [Escherichia coli W] gi|315060307|gb|ADT74634.1| predicted diguanylate cyclase [Escherichia coli W] gi|323379132|gb|ADX51400.1| diguanylate cyclase [Escherichia coli KO11] Length = 452 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441 >gi|307129860|ref|YP_003881876.1| sensory box/GGDEF family protein [Dickeya dadantii 3937] gi|306527389|gb|ADM97319.1| Sensory box/GGDEF family protein [Dickeya dadantii 3937] Length = 241 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ + N SA I + ++ +++ DID+FKQ+ND +GHP GD VI L ++ Sbjct: 84 DPLTDVFNRSAIIDLVDHALEQDQAALIVLDIDHFKQVNDAYGHPTGDAVICSLIARIRD 143 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 V +GR+GGEEF G + A +A + + + + + P +T S G+ Sbjct: 144 VLQGKGSIGRVGGEEFTILLDGYTLMAAVDVAEHIHASLNGAALE--ALPQQKVTASFGV 201 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + T+ AD ALY AK GRNRV Sbjct: 202 SWAPPRTGFDTLYSTADTALYRAKHQGRNRV 232 >gi|260219632|emb|CBA26477.1| hypothetical protein Csp_E35650 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 260 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 91/161 (56%), Gaps = 13/161 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I +R D L+GL N + F + L +++L++ F D+D+FK++ND +GH GD Sbjct: 89 IRHSARHDELTGLPNRAHFAACLEDGIKQQSLKDDRLAVFFMDVDHFKEVNDRYGHAAGD 148 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINI 210 ++ ++ +L V RLGG+EFA G S++ + LA RK++ + + N+ Sbjct: 149 ALLRVVATRLHRAMRKDDMVCRLGGDEFACLLPGVSDK--SQLARLARKLLASIATPCNL 206 Query: 211 SS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 + +HI+I ++ HK+ ++ ++ AD+A+YVAK+S Sbjct: 207 NGVMVDVHISIGIAVSHPNHKKSLN-LLAMADEAMYVAKRS 246 >gi|157376654|ref|YP_001475254.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157319028|gb|ABV38126.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 636 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 4/141 (2%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+++ FD D FK +NDN+GH +GDK + L+ VGR+GGEEF ++ Sbjct: 497 LALILFDADNFKSVNDNYGHDIGDKALIELAKISSSHMRKADLVGRVGGEEFLIILPETT 556 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 +A +A L I S + + +TISAGIA + + S ++ RAD ALY AK Sbjct: 557 LYQATEIAQRLVNSIAKSDLG-DIAANFGMTISAGIAAQEKDKSFSELLQRADSALYQAK 615 Query: 249 KSGRNRVV---CFSDIENNTC 266 GRN V SD E + Sbjct: 616 SEGRNCAVSNTSLSDAETDKA 636 >gi|117920874|ref|YP_870066.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117613206|gb|ABK48660.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 329 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 16/169 (9%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+ L N AF + LG + L+ + FDID+FK+IND +GH +GD + Sbjct: 159 ERLADTDELTQLYNRRAFFN-LGRQIAQQTAQPLAFIMFDIDHFKRINDRWGHAMGDAAL 217 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ T + RLGGEEF + ++A +A +R + + + +G S Sbjct: 218 IHIARLTQTKLRTNDILARLGGEEFGLILPNTHHEQAWQVAESIRHGFDTQPLQL-NGHS 276 Query: 216 IHITISAGIA-----ERCHKEPISTIIY----RADQALYVAKKSGRNRV 255 IH T S GI+ + H + T++ ADQA+ AK++GRN+V Sbjct: 277 IHCTASFGISSLVLPQINHPDEAQTLLETLFNNADQAMMQAKRAGRNQV 325 >gi|107099158|ref|ZP_01363076.1| hypothetical protein PaerPA_01000168 [Pseudomonas aeruginosa PACS2] gi|296386656|ref|ZP_06876155.1| hypothetical protein PaerPAb_00930 [Pseudomonas aeruginosa PAb1] gi|313112258|ref|ZP_07798029.1| putative GGDEF domain-containing protein [Pseudomonas aeruginosa 39016] gi|310884531|gb|EFQ43125.1| putative GGDEF domain-containing protein [Pseudomonas aeruginosa 39016] Length = 275 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L NE+ + D+D+FKQ+ND +GH GD+V+ ++ Sbjct: 103 DPLTGLPNRRMLLERLREENERSQRHGQSYVLAMLDVDFFKQVNDTWGHDSGDRVLVEIA 162 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + GR GGEEF + Q+A + +R + + + + ++ +T Sbjct: 163 RAMESELREYDLCGRWGGEEFLLLLPQTRLQDAGPVLERVRDSVRTLAVRVGT-EALSVT 221 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+ E E S + RAD AL AK+SGR++ V Sbjct: 222 ASVGVTEHRIGETYSQTVNRADAALLDAKRSGRDKCV 258 >gi|330937915|gb|EGH41706.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 292 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 11/171 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFKQI 142 S++ + + +R +LS D L+ N A ++SL + EK S+ F D+D+FK I Sbjct: 102 SLVMQTMAARDRYQELSETDTLTHAPNRRALVASLNTALASAEKSSLWFAMIDLDHFKSI 161 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH VGD V+ + L G F GRLGGEEF ++ +A +L + Sbjct: 162 NDTHGHDVGDNVLVGFATLLKSTKGLIAF-GRLGGEEFGVILSAANATDAVHALEELLML 220 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + + + S G+A E +S ++ AD LY AK+SGR Sbjct: 221 AQKDET-----VQVLYSFSGGVASLSRVETVSDLLKEADDNLYHAKRSGRK 266 >gi|261211055|ref|ZP_05925345.1| GGDEF family protein [Vibrio sp. RC341] gi|260840030|gb|EEX66630.1| GGDEF family protein [Vibrio sp. RC341] Length = 372 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 16/183 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDIDYFKQIN 143 ++L+ ++ LS D L+GL N + SL N + + V D+D FK +N Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWSLAQDNRQPFACVMVDVDGFKAVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGD+V+ L+ L F + V RLGG+EF ++ A +A + I Sbjct: 253 DLYGHDVGDRVLTTLAHTLRDHFRSDDLVCRLGGDEFLVLCPETNTLGAVHIAQAVCHAI 312 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I+I ++S G+AE + H E ++ ADQA+Y+AK G+NRV F Sbjct: 313 QQHVISIEGNLCWQGSVSMGVAEFDPKMKDHHE----LLRAADQAVYLAKHGGKNRVCSF 368 Query: 259 SDI 261 + + Sbjct: 369 NSV 371 >gi|253773945|ref|YP_003036776.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161137|ref|YP_003044245.1| putative diguanylate cyclase [Escherichia coli B str. REL606] gi|300902798|ref|ZP_07120749.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|301302353|ref|ZP_07208484.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1] gi|242376836|emb|CAQ31551.1| diguanylate cyclase [Escherichia coli BL21(DE3)] gi|253324989|gb|ACT29591.1| diguanylate cyclase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973038|gb|ACT38709.1| predicted diguanylate cyclase [Escherichia coli B str. REL606] gi|253977252|gb|ACT42922.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)] gi|300405148|gb|EFJ88686.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|300842192|gb|EFK69952.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1] gi|315258076|gb|EFU38044.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1] Length = 452 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441 >gi|148270691|ref|YP_001245151.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga petrophila RKU-1] gi|147736235|gb|ABQ47575.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga petrophila RKU-1] Length = 643 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 15/170 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 RI L+ D L+G+ N AF S L Y+ KLS VF D+D FK+IND+ GH V Sbjct: 477 ERILWLAERDSLTGVYNREAFESRLAYLINLSKRYSRKLSFVFIDLDDFKRINDSKGHLV 536 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++L + VGRLGG+EF + A IL +++I E+ + ++ Sbjct: 537 GDRVLKEFVNRLTSLLRKSDVVGRLGGDEFGIILPETDRTGAEIL---MKRIEEHFRESV 593 Query: 211 S-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYV---AKKSGRNRV 255 G + S GI+ E + ++ AD+ +Y+ +KK GR V Sbjct: 594 PVDGELFSVNFSYGISVFPEDGESVEELLKVADERMYMNKFSKKRGRENV 643 >gi|86360385|ref|YP_472273.1| hypothetical protein RHE_PE00107 [Rhizobium etli CFN 42] gi|86284487|gb|ABC93546.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 667 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 73/270 (27%), Positives = 120/270 (44%), Gaps = 46/270 (17%) Query: 27 FMIYFSIFFSIF--IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84 FM+ ++FFS +A V N+ +F L F + +L+ L L I+ + Y Sbjct: 132 FMMSVNLFFSFRFPVALVASATNVLIFIGALCLFAPM--LLLHKLILGAFCISCFIFTSY 189 Query: 85 ISGSILKELFISY-----NRISQ------------LSRIDCLSGLLNHSAFISSL----- 122 ++ + +E + + R+ Q LS D L+GL N A L Sbjct: 190 VNLQLNRERYKVFLNALEARLQQAAADERGKALLHLSNTDALTGLENRRAIDQHLREHWQ 249 Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV---FGTPMFVGRLGG 177 + +++ D+DYFK+ ND +GH GD+ + +S L V +G+ +GR GG Sbjct: 250 LWQDHRAPFAVLLIDVDYFKRYNDCYGHQEGDRCLVAVSQILQSVASSWGS--IIGRYGG 307 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-------ITISAGIA-ERCH 229 EEF + A LA + + + + P H IT+S G++ R Sbjct: 308 EEFLVVTPMPDLERATDLAEAM-----CAAVRALAWPHEHRRDGTTVITVSVGLSYTRDE 362 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + +IY AD+ALY AK +GR+ +V F Sbjct: 363 TKQVDKVIYEADRALYAAKATGRDNLVVFD 392 >gi|54298266|ref|YP_124635.1| hypothetical protein lpp2324 [Legionella pneumophila str. Paris] gi|53752051|emb|CAH13477.1| hypothetical protein lpp2324 [Legionella pneumophila str. Paris] Length = 506 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 15/181 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 LK+L ++S+L+ D LS L N F I+ Y L+++ D+D+FK + Sbjct: 61 LKDLERVQKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNV 120 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL-R 200 ND FGH VGD ++ ++ +L V RLGG+EFA ++ Q+A ++AN++ + Sbjct: 121 NDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNMIQ 180 Query: 201 KIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 K+ + I G ++ I IS GIA E I T+ AD ALY AK+ GRN F Sbjct: 181 KMGKPFHI---KGHTVMIGISIGIAYFPDAGDEAI-TLRKNADIALYNAKECGRNNCQIF 236 Query: 259 S 259 + Sbjct: 237 T 237 >gi|310829700|ref|YP_003962057.1| putative GGDEF domain protein [Eubacterium limosum KIST612] gi|308741434|gb|ADO39094.1| putative GGDEF domain protein [Eubacterium limosum KIST612] Length = 616 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 18/171 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 I+Q R D L+GL N + F + +Y +E+ +++ D+D+FK +ND GH GD+V Sbjct: 434 INQAHR-DALTGLYNRTTFEELVNTYLQERGDEEGAMMVVDLDHFKTVNDTLGHQGGDEV 492 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEF------AAAALGSSEQEAAILANDLRKIIENSQI 208 + L+ ++ FG +GRLGG+EF A Q A L + + E Sbjct: 493 LEDLAREMTACFGEEAVLGRLGGDEFLVFVKDVKACRDKPVQAARALCRAMNRCYER--- 549 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +SG I +++S G+A + AD+ALY K G+N V + Sbjct: 550 --NSG-QIEVSVSVGLAYSFRNSAFEMLYSMADEALYYMKDHGKNNVKVYD 597 >gi|300920917|ref|ZP_07137310.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1] gi|300412104|gb|EFJ95414.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1] Length = 452 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441 >gi|293433320|ref|ZP_06661748.1| inner membrane protein ycdT [Escherichia coli B088] gi|291324139|gb|EFE63561.1| inner membrane protein ycdT [Escherichia coli B088] Length = 431 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 264 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 323 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 324 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 383 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 384 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 420 >gi|168178971|ref|ZP_02613635.1| putative diguanylate cyclase [Clostridium botulinum NCTC 2916] gi|182670072|gb|EDT82048.1| putative diguanylate cyclase [Clostridium botulinum NCTC 2916] Length = 437 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 12/173 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144 E + + N+I +LS I L+ LN +F+ L N++ +SIVF D+DYFK ND Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGSFMEKLKDEFDDSKKNKRHISIVFIDVDYFKAYND 314 Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 N+GH GDKV+ + ++ V VGR GG+EF E ++A ++ K I Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAMEISKEI 374 Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +I S S + T+S G+A K E I +I AD+ALY +K++GRN Sbjct: 375 NKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYKSKENGRN 427 >gi|170289415|ref|YP_001739653.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga sp. RQ2] gi|170176918|gb|ACB09970.1| diguanylate cyclase with PAS/PAC sensor [Thermotoga sp. RQ2] Length = 643 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 15/170 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 RI L+ D L+G+ N AF S L Y+ KLS VF D+D FK+IND+ GH V Sbjct: 477 ERILWLAERDSLTGVYNREAFESRLAYLINLSKRYSRKLSFVFIDLDDFKRINDSKGHLV 536 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++L + VGRLGG+EF + A IL +++I E+ + ++ Sbjct: 537 GDRVLKEFVNRLTSLLRKSDVVGRLGGDEFGIILPETDRTGAEIL---MKRIEEHFRESV 593 Query: 211 S-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYV---AKKSGRNRV 255 G + S GI+ E + ++ AD+ +Y+ +KK GR V Sbjct: 594 PVDGELFSVNFSYGISVFPEDGESVEELLKVADERMYMNKFSKKRGRENV 643 >gi|115359689|ref|YP_776827.1| diguanylate cyclase [Burkholderia ambifaria AMMD] gi|115284977|gb|ABI90493.1| diguanylate cyclase [Burkholderia ambifaria AMMD] Length = 520 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 17/208 (8%) Query: 68 NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 + ++ I S L +G++ S+L ++ + + L+R D L+GL N +L Sbjct: 303 DRAIPIGSAMAVLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174 + LS++F D+D+FK+ ND GH GD +A ++ + P + R Sbjct: 363 AREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVARCIAGCLRRPADYAAR 422 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--- 231 GGEEF A +A +R I + I +G S +T S G+ C+ E Sbjct: 423 YGGEEFVVVLPNVDTNGAVTIAEAIRTGILDLGIRHDTGVSGRLTASIGVTT-CYPERDD 481 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259 I + AD ALY AK+SGRN+VV + Sbjct: 482 SIQAALKLADDALYRAKESGRNQVVVLT 509 >gi|327484046|gb|AEA78453.1| GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 527 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSEHLCKMLDE 374 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 493 YLSKSKGRNRV 503 >gi|299131993|ref|ZP_07025188.1| diguanylate cyclase [Afipia sp. 1NLS2] gi|298592130|gb|EFI52330.1| diguanylate cyclase [Afipia sp. 1NLS2] Length = 397 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 10/164 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++ L+ D L+G+ N ++ L + S++ DID FK INDN+GH GD Sbjct: 215 VADLALFDDLTGVANRRRLLTCLAEECARSDRSMQPFSVLLMDIDEFKAINDNYGHAAGD 274 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + + + T + R+GG+EF ++ EA ++A D+ + +Q++ S+ Sbjct: 275 ECLRQFTRTVQQRLRTGDLLARMGGDEFCVVLPATTLHEAGLIARDMLGLCVAAQVHWSA 334 Query: 213 GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254 +I ++ S G+A+ + +I AD+ALY +K+ G++R Sbjct: 335 A-AIKLSTSIGVAQWRPEIGHDFDRLIVTADEALYASKRDGKSR 377 >gi|209547860|ref|YP_002279777.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533616|gb|ACI53551.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 660 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 10/164 (6%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +S+ D ++G+ N F ++ LG + L + D D+FK ND +GHP GD + Sbjct: 482 ISQTDEMTGVANRRRFDEVLASELAGLGQGQDLLMLAMVDADWFKGYNDRYGHPAGDACL 541 Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 ++ L + V R GGEEFA A +S A ++ L + ++ P Sbjct: 542 KEIARVLERNTRSKQDVVARYGGEEFAIIARIASASNAPVIGQALCSAMATVKLAHEGSP 601 Query: 215 SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 H+T+S GIA + IS ++ AD+ALY AK++GRN+ V Sbjct: 602 FGHVTLSVGIALAAPDQNISPEALLLEADRALYRAKQAGRNQAV 645 >gi|52842861|ref|YP_096660.1| sensory box protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629972|gb|AAU28713.1| sensory box protein, EAL domain, GGDEF domain, signal transduction protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 371 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 108/224 (48%), Gaps = 25/224 (11%) Query: 48 IFLFYIGLTPFYGL--EYIL-VENLS-LVIISITISLLLGYISGSILKELFISYN----- 98 IF FYI P Y + EY+ ++N + L I ++ ++L ++ ++ EL + Sbjct: 143 IFEFYI---PIYSISQEYVFFLDNTNHLFIFALIFTVLYHFLVQNLQYELLLKEQNYLLI 199 Query: 99 ----RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 + LS D L+ L N S F + L + E +++ F D+D FK IND +G Sbjct: 200 ADKEKFHYLSHHDSLTNLPNRSYFHAHLQTLLENTDTKKEAITLYFMDLDKFKPINDEYG 259 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+++ S +L F F+ RLGG+EF A + + A A LR E Q Sbjct: 260 HEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPHDQIA-EALTLRIEQEFEQ 318 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250 + +G +IH TIS GIA + ++ AD+A+Y K+ Sbjct: 319 PFVINGQTIHCTISVGIANYPRNAKNAEDLLKWADKAMYDNKRK 362 >gi|304311386|ref|YP_003810984.1| hypothetical protein HDN1F_17520 [gamma proteobacterium HdN1] gi|301797119|emb|CBL45335.1| Hypothetical protein HDN1F_17520 [gamma proteobacterium HdN1] Length = 137 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/128 (39%), Positives = 73/128 (57%), Gaps = 7/128 (5%) Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK IND +GH GD V+ S+ ++ VGR GGEEFA G + + A Sbjct: 1 MLDLDHFKHINDTWGHHAGDAVLVAASEIMMANARPYDEVGRYGGEEFAILLPGVTLKIA 60 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAK 248 A +A LRK I ++ + I G I I+ S G+A C+ ++ ++ ADQALY AK Sbjct: 61 AGIAERLRKAISDAVVEI-DGNRISISASFGVA--CYPTHAISDLNDLLKAADQALYEAK 117 Query: 249 KSGRNRVV 256 + GRNRV+ Sbjct: 118 RGGRNRVI 125 >gi|157737696|ref|YP_001490379.1| GGDEF domain-containing protein [Arcobacter butzleri RM4018] gi|157699550|gb|ABV67710.1| GGDEF domain protein [Arcobacter butzleri RM4018] Length = 479 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 1/131 (0%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 ++S++F D+D FK+IND GH GD V+ +++ L + R GGEEF A + S Sbjct: 350 EISVIFLDVDNFKRINDELGHQKGDLVLKRVANILSSGIRETDLLARWGGEEFIIALIDS 409 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 + + I+ +LRK IE I + S ++T S G+ E +++ R D+A+Y + Sbjct: 410 PLENSKIVCENLRKAIE-EDIELMEICSFNVTASFGLTMVKQLETKESVLIRVDEAMYKS 468 Query: 248 KKSGRNRVVCF 258 K +GRN + Sbjct: 469 KNNGRNTITVL 479 >gi|56459409|ref|YP_154690.1| signal protein [Idiomarina loihiensis L2TR] gi|56178419|gb|AAV81141.1| Signaling protein with membrane-bound sensor domain and GGDEF domain [Idiomarina loihiensis L2TR] Length = 400 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 12/183 (6%) Query: 89 ILKELFISYNRISQLSRI---DCLSGLLNHSAFISSLGSYNEKLSI-------VFFDIDY 138 +LKE+ + +QL + D L+GL + S F+ + ++ + D+D+ Sbjct: 215 LLKEIKHRKSLEAQLRMVAERDALTGLDSRSHFMKRAEALLQRAQLEKTPFCLFMIDVDH 274 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+IND +GH GD ++ +++ +GR GGEEF +S EA +A Sbjct: 275 FKRINDTWGHTRGDLILTKIAEVCEQSLRPTDVIGRFGGEEFVVGLPHTSPSEAQTIAER 334 Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 L++ +E + + + ++++ GIA ++ + +I RAD LY K+ GRNRVV Sbjct: 335 LKENVEALPLT-AELSELCLSVTIGIAAAHGEEDDLDVLITRADNMLYEGKREGRNRVVM 393 Query: 258 FSD 260 F + Sbjct: 394 FGE 396 >gi|54293995|ref|YP_126410.1| hypothetical protein lpl1054 [Legionella pneumophila str. Lens] gi|53753827|emb|CAH15290.1| hypothetical protein lpl1054 [Legionella pneumophila str. Lens] gi|307609821|emb|CBW99338.1| hypothetical protein LPW_11161 [Legionella pneumophila 130b] Length = 506 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 15/181 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 LK+L ++S+L+ D LS L N F I+ Y L+++ D+D+FK + Sbjct: 61 LKDLERVQKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNV 120 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL-R 200 ND FGH VGD ++ ++ +L V RLGG+EFA ++ Q+A ++AN++ + Sbjct: 121 NDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNMIQ 180 Query: 201 KIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 K+ + I G ++ I IS GIA E I T+ AD ALY AK+ GRN F Sbjct: 181 KMGKPFHI---KGHTVMIGISIGIAYFPDAGDEAI-TLRKNADIALYNAKECGRNNCQIF 236 Query: 259 S 259 + Sbjct: 237 T 237 >gi|238792826|ref|ZP_04636457.1| hypothetical protein yinte0001_5820 [Yersinia intermedia ATCC 29909] gi|238727934|gb|EEQ19457.1| hypothetical protein yinte0001_5820 [Yersinia intermedia ATCC 29909] Length = 414 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 13/158 (8%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F + Y + S++ D D+FKQ+ND FGH GD+V+ L+ Sbjct: 260 DPLTGLGNRRQFFNLVEHANAQSQRYAQGFSLMLVDADHFKQVNDQFGHHKGDEVLILLA 319 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HI 218 L + R GGEEFA ++ A +A +R+ ++ + P++ + Sbjct: 320 RTLESRIRESDMIFRWGGEEFAILLPSTNLAGALQVAESIREAVQ-----LVCQPNLPQL 374 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G+A+ E ++ R D+ALY AK +GRNRV+ Sbjct: 375 TVSIGVAQHQVGEDSDSLFKRMDEALYRAKAAGRNRVL 412 >gi|325925985|ref|ZP_08187351.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] gi|325543581|gb|EGD14998.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] Length = 954 Score = 79.3 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 14/159 (8%) Query: 107 DCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN S + ++ ++ E L++V D+D+FKQ+ND GH VGD V+A + Sbjct: 790 DALTGLLNRSGILEAMAEELQGCAHGEHPLAVVLIDLDHFKQVNDEHGHLVGDAVLAKVG 849 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216 +L VGR GGEE G S+Q + LR I E I + + + Sbjct: 850 ARLTACLRDSDKVGRYGGEELLLLLPGMSQQS----QHRLRAIHEALSIAPYEVGAARPL 905 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G++ + ++++ RAD+ALY AK+SGRNR+ Sbjct: 906 QVTCSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 944 >gi|294637583|ref|ZP_06715865.1| putative inner membrane protein YcdT [Edwardsiella tarda ATCC 23685] gi|291089254|gb|EFE21815.1| putative inner membrane protein YcdT [Edwardsiella tarda ATCC 23685] Length = 451 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 28/202 (13%) Query: 79 SLLLGYISGSILKELFI-----SYNRISQLSRI-------DCLSGLLNHSAFISSLGSYN 126 SLL G ++ + E+F+ Y R+ + D L+ N S + +L Sbjct: 248 SLLFGLLANFCVMEIFLYDIFQRYRRMQHAYVVTHDNAIRDGLTRAYNRSYYYDALQHAL 307 Query: 127 EKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ S I+ DID+FKQ+ND +GH GD+ + ++ + V T + R+GG+E Sbjct: 308 QRASVEYPPAILIMDIDHFKQVNDRYGHLSGDRALIAVTRAIEQVLATGDVLARIGGDEL 367 Query: 181 AAAALGSSEQEAAILAN--DLRKIIENSQINISSGPSIHITISAG----IAERCHKEPIS 234 L + E EA + A +R + ++ G + +T+S G RC E Sbjct: 368 -CVLLPAVENEAVLQARAEQIRARVAALTLSAQDGRPVTVTLSIGGVLCRPARCSAE--- 423 Query: 235 TIIYRADQALYVAKKSGRNRVV 256 + RAD ALY AK++GRNRVV Sbjct: 424 AYMVRADSALYQAKQTGRNRVV 445 >gi|325982818|ref|YP_004295220.1| diguanylate cyclase [Nitrosomonas sp. AL212] gi|325532337|gb|ADZ27058.1| diguanylate cyclase [Nitrosomonas sp. AL212] Length = 487 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 16/185 (8%) Query: 91 KELFI--SYNRISQL---SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDY 138 KEL + S +RI L S+ D L+G N + F +L YN L++ D+D+ Sbjct: 301 KELLMIHSLSRIKDLEDKSQRDGLTGAYNRTYFDETLRREFNLSTQYNLPLTVAIIDLDH 360 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +ND +GH GD ++A + + + R GGEEFA G+ A L Sbjct: 361 FKHVNDTYGHVAGDSLLATVVKTIFDQIRQDDTLSRYGGEEFALILPGTPLSAARNLIAR 420 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNR 254 L+ + S IHIT S G+A +I AD ALY AK +GRN+ Sbjct: 421 LKDSVAAISYKFDSNSIIHITASIGVASYYENAASFHDAKDLIKAADSALYAAKHAGRNQ 480 Query: 255 VVCFS 259 ++ +S Sbjct: 481 IIEWS 485 >gi|238927426|ref|ZP_04659186.1| possible diguanylate cyclase [Selenomonas flueggei ATCC 43531] gi|238884708|gb|EEQ48346.1| possible diguanylate cyclase [Selenomonas flueggei ATCC 43531] Length = 620 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 14/174 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + +++QL+ D L+ LLN ++ + LS++ DID+FK +N Sbjct: 440 EELHTANQQLTQLAIRDTLTNLLNRREMERLLKEAVALSQAQKTPLSVILMDIDHFKAVN 499 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 DN+GH +GDKV+ +SD + R GG+EF G+ A + +R+ + Sbjct: 500 DNYGHDMGDKVLLTVSDAISRTIRGSDAGCRWGGDEFFIILQGAPLAVAGRVGERIRRRV 559 Query: 204 ENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255 E +++ P H +TIS G A ++ +++ AD+ALY AKK+GRN V Sbjct: 560 EEAKM-----PFHHNVTISVGAAAFDPEQDNELQLFKNADEALYQAKKAGRNVV 608 >gi|146311799|ref|YP_001176873.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638] gi|145318675|gb|ABP60822.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638] Length = 410 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F N ++ S++ D D+FK IND FGH GD+V+ LS Sbjct: 256 DSMTGLLNRRQFYRITEQTNPSHLPLQDQFSLLLVDTDHFKNINDVFGHLKGDEVLISLS 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L FV R GGEEF + A +A +R + ++I I P T Sbjct: 316 RTLEACSRKDDFVFRWGGEEFVILLPRTQLDIAMQVAETIRAAV--ARIAIPGLP--RFT 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRN+V+ Sbjct: 372 VSIGVARHNPDESIDELFKRVDDALYRAKNDGRNKVLA 409 >gi|187477502|ref|YP_785526.1| signaling protein [Bordetella avium 197N] gi|115422088|emb|CAJ48612.1| putative signaling protein [Bordetella avium 197N] Length = 429 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 14/179 (7%) Query: 88 SILKEL--FISYNRI-SQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDID 137 S+LK++ F++ ++ S+ R D L+GLLN + + + S++ DID Sbjct: 246 SVLKDISQFVAREKLLSKQVRSDALTGLLNRRGAAAKIQRLHRAAHQSGRFYSVIMADID 305 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK+IND FGH +GD V+ ++ + V R GGEEF +A LA Sbjct: 306 HFKKINDQFGHLLGDTVLKRCANLIRDNVREGDAVARWGGEEFLILLPNCPLIKAVALAE 365 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R I I+ +T+S G+ E ++I RAD+ALY AK GRN+V Sbjct: 366 RIRNTIATLTDPITG----QVTLSLGVGTSSPAETPQSLIQRADKALYKAKAQGRNQVA 420 >gi|87200494|ref|YP_497751.1| diguanylate cyclase [Novosphingobium aromaticivorans DSM 12444] gi|87136175|gb|ABD26917.1| diguanylate cyclase [Novosphingobium aromaticivorans DSM 12444] Length = 374 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 9/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143 + L S + + + D L+GL N AF + E L + F DID+FK+IN Sbjct: 187 RALQKSLDEARRNAEEDHLTGLPNRRAFEALFEREYQEARKAGEPLCVAFCDIDHFKRIN 246 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+V+ +++ L + V R GGEEFA + +A + R+ I Sbjct: 247 DAHGHAAGDRVLKLVAETLNRISDARCHVARHGGEEFAVLFRSLTPDDAWERLDRARQEI 306 Query: 204 ENSQ-INISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + +N ++ P +T S GIA+ + + + AD ALY AK+SGRN++ Sbjct: 307 ADRRLVNRATDLPFGRVTFSGGIADVFAYDSRTNALRAADDALYAAKQSGRNQI 360 >gi|307720847|ref|YP_003891987.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM 16294] gi|306978940|gb|ADN08975.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM 16294] Length = 630 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 14/187 (7%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFF 134 I L+L Y+ L Y + + + ID L+ + N S F+ + N L ++ Sbjct: 206 IMLILAYV-------LVYLYYKTRKKAFIDPLTQVYNRQYLSEFLETTSLQNYYLMMI-- 256 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+D FK++NDN+GH +GD V+ ++ ++ V R GGEEF +E+ Sbjct: 257 DLDNFKRVNDNYGHNIGDDVLVAVAQEIKSTVRQEDIVIRFGGEEFILLVDKKENKESIG 316 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 +A +R+ + N I S I +T+S G+ + + + I AD+ LYVAK SGRN Sbjct: 317 VAERIRQAVMNLDIQ-SHDNQISMTLSIGVNPFPYSAKNMDEAIKIADEQLYVAKSSGRN 375 Query: 254 RVVCFSD 260 RV F D Sbjct: 376 RVEIFDD 382 >gi|304406647|ref|ZP_07388302.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] gi|304344180|gb|EFM10019.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] Length = 354 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 9/182 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143 ++L + + +L + D L+ L NH F L + + L + DID FK +N Sbjct: 165 QDLLVKTVLMDKLIKTDALTELYNHITFHEYLEHLIIQHEANDLSLQLALIDIDNFKLVN 224 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD ++ +S+ + G R GGEEFA +++ L LR I Sbjct: 225 DQYGHRAGDAILRRVSEIIRTESGANDVAARYGGEEFAILLTDKMPEQSLALLEKLRVKI 284 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 ++ G +TIS G + E R D ALY+AKKSG+N++V +I+ Sbjct: 285 AAETHDLLDGKK--VTISIGFSRYRPWEGKEVFFARTDAALYMAKKSGKNQIVHADEIDP 342 Query: 264 NT 265 ++ Sbjct: 343 HS 344 >gi|283785725|ref|YP_003365590.1| cellulose synthesis regulatory protein (signal transduction protein) [Citrobacter rodentium ICC168] gi|282949179|emb|CBG88787.1| cellulose synthesis regulatory protein (signal transduction protein) [Citrobacter rodentium ICC168] Length = 564 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 10/163 (6%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N A + + S++ D+D+FK IND FGH GD+V+ + Sbjct: 401 DTLTRLYNRGALFGKARHLAQRCQAQKQPFSVIQIDLDHFKSINDRFGHQAGDRVLTHAA 460 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + GR+GGEEF ++ +A +A +R+ + ++ ++ ++ I+ Sbjct: 461 SLISGTLRADDVAGRVGGEEFCVVLPATTLAQAEAIAERIRQRLNEKELLVAKSTTLRIS 520 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S G+ A+ + AD+ LY+AK+ GRNR VC +D Sbjct: 521 ASLGVSSAQENDDYDFEQLQSLADRRLYLAKQMGRNR-VCITD 562 >gi|134290975|ref|YP_001114744.1| diguanylate cyclase [Burkholderia vietnamiensis G4] gi|134134164|gb|ABO58489.1| diguanylate cyclase [Burkholderia vietnamiensis G4] Length = 328 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+R D L+GL N AF L LS++F DID FK ND++GH GD Sbjct: 147 LQRLARRDALTGLENRGAFDEMLSQEWANTLRTGRHLSLLFIDIDRFKSYNDHYGHQSGD 206 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P V R GGEEF + + AA +A +R+ I + + ++ Sbjct: 207 QALKAVAHCISACVSRPSDHVARYGGEEFVVILPETDVEGAAAVAEKIRQAIHDMHVAHV 266 Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255 SG ++T S G++ H +I AD A+Y AK GRNRV Sbjct: 267 KSGFG-YVTASIGVSSSAHPAVHDGDALIRVADLAVYEAKSRGRNRV 312 >gi|254225335|ref|ZP_04918947.1| GGDEF family protein [Vibrio cholerae V51] gi|125622176|gb|EAZ50498.1| GGDEF family protein [Vibrio cholerae V51] Length = 537 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 325 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 384 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 385 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 444 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 445 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 502 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 503 YLSKSKGRNRV 513 >gi|117619871|ref|YP_855827.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561278|gb|ABK38226.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 517 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 75/173 (43%), Gaps = 17/173 (9%) Query: 103 LSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 LSR D L+G N F L ++ FD D+FKQ+ND FGH VGD+V+ L Sbjct: 352 LSRHDALTGAFNRHYLDEFERRHQQRGGSLGVIMFDCDHFKQVNDRFGHEVGDQVLIQLV 411 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------G 213 + R GGEEF A E L ++ E ++ I+ Sbjct: 412 RLCQQHLRREDALIRWGGEEFLLLAAKGGE--------PLDQLAEQLRLRIARYPWQELA 463 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 P++ +T+S G + I RAD ALY AK +GRNR + D C Sbjct: 464 PALAVTVSLGYHHSTTDTQLQEAIRRADVALYQAKANGRNRSERWQDDGAGNC 516 >gi|296164430|ref|ZP_06847004.1| diguanylate cyclase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900212|gb|EFG79644.1| diguanylate cyclase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 361 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 13/161 (8%) Query: 104 SRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 S D L+GL N F IS+ G + LS++ D+D FK++ND GH GD+++ Sbjct: 194 SSTDPLTGLRNRRGFYRAASRISAAGHPSSCLSVLMVDLDRFKRVNDTHGHATGDRILVA 253 Query: 158 LSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENSQINISS--GP 214 ++D L + + R+GGEEF A +G+ QEA +A LR I + +++ G Sbjct: 254 VADNLRRLGDEGTIIARVGGEEFLVAQTIGT--QEALRMAEALRLAIAATPWGVTASVGA 311 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S + G E ++ I +++ AD A+Y AK++G N+V Sbjct: 312 SSFRLPAEG--ETLDRQLIERLVHAADLAMYEAKRAGGNQV 350 >gi|261822254|ref|YP_003260360.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] gi|261606267|gb|ACX88753.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] Length = 353 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 12/182 (6%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFF 134 LGY++ + +L + ++S D ++ L N + L + ++V F Sbjct: 171 LGYVTYTTALKLAEHKRMLMEVSIHDGMTNLYNRHHWEHLLKHEYDICLRHKRTATLVLF 230 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK NDNFGH VGD+ I L+ +L F +GR GG+EFA + +A Sbjct: 231 DIDHFKAFNDNFGHNVGDQAILLLARELTSGFRDTDVIGRFGGDEFAVILPQTRAGDALD 290 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGR 252 N +R+ + S +S P + + +S GIAE E I + AD ALY AK GR Sbjct: 291 AVNRIRESL--SLKFLSQTPQLAVFVSVGIAE-ISPEMGQYIDWLKAADMALYRAKNKGR 347 Query: 253 NR 254 R Sbjct: 348 RR 349 >gi|126175209|ref|YP_001051358.1| diguanylate cyclase [Shewanella baltica OS155] gi|125998414|gb|ABN62489.1| diguanylate cyclase [Shewanella baltica OS155] Length = 579 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/137 (38%), Positives = 72/137 (52%), Gaps = 8/137 (5%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA 183 +N L I+ FDID FKQ ND +GH GD+ + + + + P + R GGEEF Sbjct: 434 HNMPLGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIV 493 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEP----ISTIIY 238 S +E A LR+ I + +I P I TISAGI C + P +++I Sbjct: 494 LPSSHLEEVYQFAELLREKIISLEIPHEDSPHAGILTISAGIT--CWQLPQQLDANSLIN 551 Query: 239 RADQALYVAKKSGRNRV 255 RAD+ALY AK +GRNR Sbjct: 552 RADEALYHAKLTGRNRT 568 >gi|87121506|ref|ZP_01077395.1| sensory box sensor/GGDEF/EAL domain protein [Marinomonas sp. MED121] gi|86163349|gb|EAQ64625.1| sensory box sensor/GGDEF/EAL domain protein [Marinomonas sp. MED121] Length = 878 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 16/173 (9%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +++D L+GLLN + F+ + Y +K S I F D+D FK +ND +GH VGD+++ Sbjct: 439 AQMDSLTGLLNRATFVEKMSDYIKKNSAHKSAIFFIDLDKFKTVNDQYGHHVGDELLLEF 498 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-----QEAAILANDLRKIIENSQINISSG 213 S +L F + RLGG+EFA LG ++ + A + LRK S+G Sbjct: 499 SRRLKACFSENEVISRLGGDEFAVFLLGVTDLPQLNKLADKVVAGLRK-----PFAFSNG 553 Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + I+ S GI+ + S + +AD A+Y K++GR + F+ N T Sbjct: 554 FNFKISASIGISMLDETVKSASEGLKQADMAMYEVKRNGRADFIIFNQGLNET 606 >gi|134291605|ref|YP_001115374.1| diguanylate cyclase [Burkholderia vietnamiensis G4] gi|134134794|gb|ABO59119.1| diguanylate cyclase [Burkholderia vietnamiensis G4] Length = 210 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 12/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+R D L+GL N AF L LS++F DID FK ND++GH GD Sbjct: 29 LQRLARRDALTGLENRGAFDEMLSQEWANTLRTGRHLSLLFIDIDRFKSYNDHYGHQSGD 88 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P V R GGEEF + + AA +A ++R+ I + + ++ Sbjct: 89 QALKAVAHCISACVSRPSDHVARYGGEEFVVILPETDVEGAAAVAEEIRQAIHDMHVAHV 148 Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255 SG ++T S G++ H +I AD A+Y AK GRNRV Sbjct: 149 KSGFG-YVTASIGVSSSAHPAVHDGDALIRVADLAVYEAKSRGRNRV 194 >gi|254286172|ref|ZP_04961132.1| fog: ggdef domain [Vibrio cholerae AM-19226] gi|150423841|gb|EDN15782.1| fog: ggdef domain [Vibrio cholerae AM-19226] Length = 527 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 493 YLSKSKGRNRV 503 >gi|76817698|ref|YP_336807.1| hypothetical protein BURPS1710b_A1650 [Burkholderia pseudomallei 1710b] gi|254263027|ref|ZP_04953892.1| diguanylate cyclase [Burkholderia pseudomallei 1710a] gi|76582171|gb|ABA51645.1| putative membrane protein [Burkholderia pseudomallei 1710b] gi|254214029|gb|EET03414.1| diguanylate cyclase [Burkholderia pseudomallei 1710a] Length = 462 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N L++V D D+FKQ N Sbjct: 275 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTPLALVMVDDDHFKQYN 334 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V G FV R GGEEFA G+ E+ AA +A R+ Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPGADERGAATIAERARQA 394 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E +I AD ALY AK GRN Sbjct: 395 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 446 >gi|77456418|ref|YP_345923.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gi|77380421|gb|ABA71934.1| conserved GGDEF domain protein [Pseudomonas fluorescens Pf0-1] Length = 329 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 2/130 (1%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 +++ + DID FK IND +GHP GD V+ +++ GR+GGEEFAA G Sbjct: 199 QMAFLLLDIDDFKVINDTYGHPEGDNVLQRIAECGRASLRRGDLFGRIGGEEFAAVFPGC 258 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYV 246 + A +A L++ I+ N + + IT+S G+ E + T+ RAD A+Y Sbjct: 259 APDMAMQVAERLQREIQRLSFN-HADQTFGITVSQGLTSLTPEDESLDTLFARADAAMYE 317 Query: 247 AKKSGRNRVV 256 AK+ G+NR++ Sbjct: 318 AKRQGKNRII 327 >gi|117927828|ref|YP_872379.1| diguanylate cyclase [Acidothermus cellulolyticus 11B] gi|117648291|gb|ABK52393.1| diguanylate cyclase [Acidothermus cellulolyticus 11B] Length = 517 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 14/166 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +I+ L+ D L+G+ N +L + +S+V DID+FK IND FGH V Sbjct: 341 EQITLLAATDMLTGVANRRTLEENLDRMFAQASRAAQPISVVMVDIDHFKHINDTFGHQV 400 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + ++ L + V R GGEEF + AA A +LR+ I + Sbjct: 401 GDQTLQRVARALQQGCRSSDLVARYGGEEFVVVLPDTDLAGAATAAENLRRRI----FGL 456 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + P +T+S G+A H I+ AD ALY +K +GRNRV Sbjct: 457 DAEP--RVTVSLGVATFPLHGGSPDHILSAADAALYQSKSAGRNRV 500 >gi|88704261|ref|ZP_01101975.1| GGDEF domain protein [Congregibacter litoralis KT71] gi|88701312|gb|EAQ98417.1| GGDEF domain protein [Congregibacter litoralis KT71] Length = 447 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 8/176 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L NR + D L+G+ + A+ +S Y E +V DID+FK++N Sbjct: 273 EQLQEKLNRNREKLMRDTLTGVHSRLAYDEMMAQEMSRFRRYKETFCLVMLDIDFFKRVN 332 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH GDK + ++ + ++ R+GGEEF + A+ L +R + Sbjct: 333 DTFGHAAGDKALQSVASIVGDRIRETDYLFRVGGEEFVLLLPRTEVSAASPLVEVIRVAV 392 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S + + P + IT+SAG+ + T+ RAD A+Y AKK+GRNR+V Sbjct: 393 GESGFHYENQP-VTITLSAGLTAVRDDDTPETLFARADDAMYRAKKAGRNRLVTLE 447 >gi|85703548|ref|ZP_01034652.1| diguanylate cyclase, putative/response regulator [Roseovarius sp. 217] gi|85672476|gb|EAQ27333.1| diguanylate cyclase, putative/response regulator [Roseovarius sp. 217] Length = 479 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 13/164 (7%) Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+G N I + S + +++ D+D+FKQ+ND +GH GD+V+ + Sbjct: 309 IDPLTGAHNRRFALPFLQRVIETSRSTGKSFAVMVADLDFFKQVNDRYGHAAGDRVLCEV 368 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIH 217 + L + R+GGEEF ++ A A+ L +I + I +S ++H Sbjct: 369 TRHLRAHLREGDMLARIGGEEFLIVTPATTRLRAQRTADRLCAMIAQTPITLSGHKATLH 428 Query: 218 ITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+ + P+ ++ AD+ALY AK GRN V Sbjct: 429 VTVSIGVTMANPSPSRAAPPVGQLLEEADRALYAAKAQGRNTVT 472 >gi|262368213|ref|ZP_06061542.1| response regulator [Acinetobacter johnsonii SH046] gi|262315891|gb|EEY96929.1| response regulator [Acinetobacter johnsonii SH046] Length = 476 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 120/243 (49%), Gaps = 14/243 (5%) Query: 24 PHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG 83 P +I+ ++ +++F ++I F+ Y LT +Y +N IS+ I L + Sbjct: 233 PLAGLIWAALSYNLFYVSIINSLVCFVTYHSLTTYYISR--TADNFLATSISVRIGLCML 290 Query: 84 YISGSIL----KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFF 134 I+ +L + Y + L+ D L+ + N F + + ++ +SI+ Sbjct: 291 MIAPLLLCIVSRNRHDLYKEVLYLANHDPLTHVGNRRFFFTQTENLLKENLVKSMSIIVL 350 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK++ND +GH +GD ++ + + R+GGEEF ++E E+ I Sbjct: 351 DIDHFKKMNDQYGHYIGDVLLQSFATTVKSNLREQDLFARMGGEEFVVVLNNTTEIESQI 410 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGR 252 +A + + + S+ ++ + +T+S G+ + + + +++ RAD+ALY AK GR Sbjct: 411 IAERICRAVATSKTQVAHA-VLSMTVSLGVVHQVLPTQNSLQSLLNRADRALYQAKTLGR 469 Query: 253 NRV 255 N+V Sbjct: 470 NQV 472 >gi|261886477|ref|ZP_06010516.1| diguanylate cyclase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 404 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 77/153 (50%), Gaps = 6/153 (3%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++L+ D LSG + F + Y ++ ++ FDID FK+IND FGH +GD + Sbjct: 253 MAKLANTDFLSGAYSRRYFYMDMKEYYKNCSDQSFAVAMFDIDDFKKINDKFGHDIGDII 312 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I LS L+ V R GGEEF + +A A +R I +S INI G Sbjct: 313 IQKLSSFLIGWISEGDLVARFGGEEFCVVLKNINFDDAVKKAVSIRAKIASSLINI-KGF 371 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVA 247 I T+S G+ + I II +AD+ALY A Sbjct: 372 DIKFTVSIGVTNGDFSKNIDHIISKADEALYNA 404 >gi|184157424|ref|YP_001845763.1| GGDEF domain-containing protein [Acinetobacter baumannii ACICU] gi|213156113|ref|YP_002318533.1| hypothetical protein AB57_1151 [Acinetobacter baumannii AB0057] gi|215484151|ref|YP_002326376.1| WspR [Acinetobacter baumannii AB307-0294] gi|239503319|ref|ZP_04662629.1| WspR [Acinetobacter baumannii AB900] gi|260557373|ref|ZP_05829588.1| WspR [Acinetobacter baumannii ATCC 19606] gi|301347761|ref|ZP_07228502.1| WspR [Acinetobacter baumannii AB056] gi|301512248|ref|ZP_07237485.1| WspR [Acinetobacter baumannii AB058] gi|301596672|ref|ZP_07241680.1| WspR [Acinetobacter baumannii AB059] gi|332854540|ref|ZP_08435418.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013150] gi|332870165|ref|ZP_08439077.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013113] gi|332875103|ref|ZP_08442939.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6014059] gi|183209018|gb|ACC56416.1| GGDEF domain protein [Acinetobacter baumannii ACICU] gi|213055273|gb|ACJ40175.1| hypothetical protein AB57_1151 [Acinetobacter baumannii AB0057] gi|213987993|gb|ACJ58292.1| WspR [Acinetobacter baumannii AB307-0294] gi|260408999|gb|EEX02302.1| WspR [Acinetobacter baumannii ATCC 19606] gi|322507304|gb|ADX02758.1| GGDEF domain protein [Acinetobacter baumannii 1656-2] gi|323517323|gb|ADX91704.1| GGDEF domain protein [Acinetobacter baumannii TCDC-AB0715] gi|332727949|gb|EGJ59344.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013150] gi|332732432|gb|EGJ63688.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013113] gi|332736720|gb|EGJ67711.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6014059] Length = 420 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 13/184 (7%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFF 134 L I+ IL+ I + + LS+ D L+ + N F + EK L+++F Sbjct: 229 LAEINEQILR---IEASELLHLSQQDALTQISNRRTFDEMFDFFYYRANQEKRPLAVLFI 285 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND +GH +GDKVI+ ++ + FV R GGEEF + Q A Sbjct: 286 DIDFFKNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPETPAQGAYS 345 Query: 195 LANDLRKIIENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSG 251 +A ++ K IE I + +S S ++TIS G + K +I+ ADQALY AK+ G Sbjct: 346 VAANIYKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMGQDRLIHAADQALYRAKQLG 405 Query: 252 RNRV 255 RN++ Sbjct: 406 RNQI 409 >gi|184157028|ref|YP_001845367.1| response regulator [Acinetobacter baumannii ACICU] gi|239501295|ref|ZP_04660605.1| response regulator [Acinetobacter baumannii AB900] gi|260555649|ref|ZP_05827869.1| response regulator [Acinetobacter baumannii ATCC 19606] gi|332872603|ref|ZP_08440571.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6014059] gi|183208622|gb|ACC56020.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Acinetobacter baumannii ACICU] gi|260410560|gb|EEX03858.1| response regulator [Acinetobacter baumannii ATCC 19606] gi|322506927|gb|ADX02381.1| Diguanylate cyclase [Acinetobacter baumannii 1656-2] gi|323516794|gb|ADX91175.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332739132|gb|EGJ69991.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6014059] Length = 473 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L F+ S+ EK+ + D+D+FK++ND++GH +GD+ + Sbjct: 312 DELTSSLTRRQFLQSVRLLQEKVQKENKTSAFFMLDVDHFKKVNDSYGHLIGDRALQTCV 371 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + +GR GGEEFA ++ + A LA +R I I + I + Sbjct: 372 TTIQNILHPHDLLGRFGGEEFAIFIPDTTREAAFELAERIRIQISQQPIYVYGKLPIFVQ 431 Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S GI+ + I ++ AD ALY AK+ GRNRV Sbjct: 432 VSIGISLYSPSYHRSIESLFKEADDALYQAKRQGRNRV 469 >gi|70730957|ref|YP_260698.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68345256|gb|AAY92862.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5] Length = 366 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 22/224 (9%) Query: 44 FIANIFLFYIGLTPFYGLEYILVE--NLSLVIISITISLLLGY----ISGSILKELFISY 97 F++ IF+ ++ L PF+ L E L +++ ++ +S L Y + + L +S Sbjct: 139 FVSAIFITWLVLNPFWRTSTTLQELKGLLVLVYALFLSALTLYSFITLRRARLHNYIMSK 198 Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVG 151 + Q + +D L+ + N +F++ G + L + DID FK++ND +GH +G Sbjct: 199 LLLDQ-AYLDTLTEIPNRRSFMARAGQRLQALPREHDHYLAMVDIDNFKKVNDVYGHDIG 257 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++ + V + RLGGEEFA + LA L +++ + Sbjct: 258 DEVLKRIAADIKGVMRDFDY-ARLGGEEFAIYLADVPRADVEALATRLCQVVRDQ----- 311 Query: 212 SGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 P+ H +TIS G+A E ++ + +ADQALY +K G++R Sbjct: 312 --PTRHPVTISMGLARVEPGETLNQALIKADQALYESKHGGKDR 353 >gi|42527191|ref|NP_972289.1| GGDEF domain-containing protein [Treponema denticola ATCC 35405] gi|41817615|gb|AAS12200.1| GGDEF domain protein [Treponema denticola ATCC 35405] Length = 987 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQI 142 K+L + +++ LS +D L+G+ N + ++G + +S++ DID FKQ Sbjct: 808 KDLISANEQLTVLSTVDELTGVGNRRQ-LDTVGKDLWRRGLDNKQPISLIMIDIDLFKQY 866 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD V+ ++ L FVGR GGEEF SS E +A LR Sbjct: 867 NDLYGHQAGDNVLRTVAQTLQKKLRAKYDFVGRYGGEEFLVLLYNSSASETMKIAEKLRI 926 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253 I+N I S+ +TIS G +S T++ AD ALY AK+SGR+ Sbjct: 927 EIKNLNIEHSAEKDKILTISLGAYTSVPNNELSYETMLSFADSALYKAKESGRD 980 >gi|95928551|ref|ZP_01311298.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95135341|gb|EAT16993.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 526 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 22/235 (9%) Query: 33 IFFSIFIATVIFIANIFLFYIGLTPFYGLEYI--LVENLSLVIISITISL-LLGYISGSI 89 +FF +FI T++ + G T F+ L+ + L E+L L + T +L L Sbjct: 295 LFFCVFILTLMSL-------FGGTGFF-LKQVRSLQESLELKVAKRTSALQALNETLSLE 346 Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ++E + + +LS D L+G+ N F S+ LS++ DID FK Sbjct: 347 IQERKKAQRALKELSEKDVLTGIYNRRKFNTYYETEWSAARREGRVLSLLMIDIDLFKIY 406 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD+ + ++ L P FV R GGEEF +S+Q A LA +R+ Sbjct: 407 NDRYGHLAGDQALHQVAITLNQTVSRPRDFVARYGGEEFICLLPETSQQAAVQLAETMRQ 466 Query: 202 IIENSQ-INISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRN 253 +E+ I+ S + IT+S G+A + +I AD+ALY+AK+ GRN Sbjct: 467 HVEDLHYIHEFSDTANVITVSIGVASVIPEKNQAKEELIDLADKALYLAKRDGRN 521 >gi|296273131|ref|YP_003655762.1| serine/threonine protein kinase [Arcobacter nitrofigilis DSM 7299] gi|296097305|gb|ADG93255.1| serine/threonine protein kinase [Arcobacter nitrofigilis DSM 7299] Length = 1646 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 11/168 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 ++ LSR D L+ + N AF L E+ +S++ D+D+FK+ ND +GH G Sbjct: 1478 KLDLLSRTDSLTSINNRRAFDECLEKNFEQAKRDKKPISLMICDVDFFKKYNDFYGHQKG 1537 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-IN 209 D + ++ L P V R GGEEFA +++ A +AN++ + S+ I+ Sbjct: 1538 DDCLIKVAQTLKESLKRPNDSVSRYGGEEFAIILPDTNKIGAIKIANEIHNNLNKSKIIH 1597 Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S S ++TIS G++ E+ + +I AD+ALY AKKSGRN+ Sbjct: 1598 EKSEVSKYLTISIGVSTIEKFNTYDTKQLINSADKALYDAKKSGRNQT 1645 >gi|294635274|ref|ZP_06713775.1| putative sensor-type protein [Edwardsiella tarda ATCC 23685] gi|291091340|gb|EFE23901.1| putative sensor-type protein [Edwardsiella tarda ATCC 23685] Length = 1002 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 14/191 (7%) Query: 80 LLLGYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAFISSLG-------SYNEKL 129 +L+GY+ + +++ + + QLS D L+GL N +F +L Y+++ Sbjct: 532 ILMGYVV--VFQDVSETRTLLRQLSYSALHDPLTGLPNRVSFEQALRRALRGAIEYHQRH 589 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +VF D+DYFK INDN GH GD+++ L+ + + + RLGG+EFA Sbjct: 590 VLVFLDLDYFKSINDNAGHAAGDRLLQDLAQLMRSLLRPQDTLARLGGDEFALILCDCEL 649 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAK 248 + ++ + L I G HI SAG+ + H ++ I +AD A Y AK Sbjct: 650 SQGKLMVDQLIHEIAAYPFPW-QGQQYHIGASAGLTQLQHDNALADETINQADAACYQAK 708 Query: 249 KSGRNRVVCFS 259 GR R C S Sbjct: 709 HRGRGRAFCHS 719 >gi|227013291|gb|ACP09501.1| GGDEF family protein [Vibrio cholerae O395] Length = 537 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 325 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 384 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 385 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 444 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 445 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 502 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 503 YLSKSKGRNRV 513 >gi|193076781|gb|ABO11498.2| GGDEF [Acinetobacter baumannii ATCC 17978] Length = 420 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 13/184 (7%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFF 134 L I+ IL+ I + + LS+ D L+ + N F + EK L+++F Sbjct: 229 LAEINEQILR---IEASELLHLSQQDALTQISNRRTFDEMFDFFYYRANQEKRPLAVLFI 285 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND +GH +GDKVI+ ++ + FV R GGEEF + Q A Sbjct: 286 DIDFFKNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPETPAQGAYS 345 Query: 195 LANDLRKIIENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSG 251 +A ++ K IE I + +S S ++TIS G + K +I+ ADQALY AK+ G Sbjct: 346 VAANIYKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMGQDRLIHAADQALYRAKQLG 405 Query: 252 RNRV 255 RN++ Sbjct: 406 RNQI 409 >gi|315637474|ref|ZP_07892685.1| GGDEF domain protein [Arcobacter butzleri JV22] gi|315478264|gb|EFU68986.1| GGDEF domain protein [Arcobacter butzleri JV22] Length = 156 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 1/131 (0%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 ++S++F D+D FK+IND GH GD V+ +++ L + R GGEEF A + S Sbjct: 27 EISVIFLDVDDFKRINDELGHQKGDLVLKRVANILSSGIRETDLLARWGGEEFIIALIDS 86 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 S + + I+ +LRK IE I + S ++T S G+ E +++ R D+A+Y + Sbjct: 87 SLENSKIVCENLRKAIE-EDIELMEICSFNVTASFGLTMVKQLETKESVLIRVDEAMYKS 145 Query: 248 KKSGRNRVVCF 258 K +G+N++ Sbjct: 146 KNNGKNKITVL 156 >gi|258624398|ref|ZP_05719345.1| GGDEF family protein [Vibrio mimicus VM603] gi|258583245|gb|EEW08047.1| GGDEF family protein [Vibrio mimicus VM603] Length = 371 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 17/181 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIV--FFDIDYFKQIN 143 K+ + + ++ LS D L+GL N + L S +K V D+D FK++N Sbjct: 193 KQFYQANRQLEALSLTDSLTGLPNRRKAMHQLALHWNLSREQKKPFVCVMIDVDGFKEVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D++GH +GDKV+ ++ L F V RLGG+EF A + +A + + Sbjct: 253 DSYGHDIGDKVLTIIAHALKDHFRNDDLVCRLGGDEFLAICPNTDAVSEVHIAEHVCDEV 312 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 E +I + G ++S G+AE + H E ++ ADQA+Y+AK +G+NRV F Sbjct: 313 ELLEIPV-EGIHWQGSVSMGVAEFDPSMKDHHE----LLRAADQAVYLAKNNGKNRVCAF 367 Query: 259 S 259 + Sbjct: 368 N 368 >gi|188591943|ref|YP_001796541.1| diguanylate cyclase [Cupriavidus taiwanensis LMG 19424] gi|170938317|emb|CAP63302.1| putative diguanylate cyclase (GGDEAF) and c-di-GMP phosphodiesterase (EAL domain) with Chase and PAS domains [Cupriavidus taiwanensis LMG 19424] Length = 1064 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 93/169 (55%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+GL N + A + + E+++++ D+D+FK+IND+ GHPVGD Sbjct: 617 IRHLALHDPLTGLPNRAELGERAQALLLQARTRGERVALLLLDLDHFKRINDSLGHPVGD 676 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211 V+ ++D++ V R+GG+EF G + EA ++A ++ + N ++ ++ Sbjct: 677 DVLRTMADRIKGTVRQGDLVARMGGDEFGVVLGGLRHDSEAELIAAKIQARV-NEEL-VA 734 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 G + +T S G+A + ++ ++ AD A+Y AK+ GR R+ F+ Sbjct: 735 GGQRLRVTPSVGMAVFPDDGDTLTELLKSADSAVYAAKQGGRARLCRFA 783 >gi|119775516|ref|YP_928256.1| GGDEF family protein [Shewanella amazonensis SB2B] gi|119768016|gb|ABM00587.1| GGDEF family protein [Shewanella amazonensis SB2B] Length = 649 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 87/175 (49%), Gaps = 21/175 (12%) Query: 98 NRISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 N+ +L++ D L+G N + A I + + E + V D+D FK+IND FGH Sbjct: 406 NKYMRLAQRDGLTGTYNRATGQEKGENALIGCM-ARGEPTAAVLLDLDNFKRINDEFGHA 464 Query: 150 VGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GD KV+ + QL + R GGEEF G S +A +A R+ I Sbjct: 465 TGDWTLKKVVEVIRPQLA----DDHILCRFGGEEFMLILPGLSGAQAVEVAERCREAI-- 518 Query: 206 SQINIS-SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 + +N SG S +T S G+ E H + + +I RAD ALY AK GRNRVV + Sbjct: 519 AGVNTHYSGHSFKLTASFGVTEWQHGDLSLDPMIKRADLALYRAKHLGRNRVVSY 573 >gi|134293814|ref|YP_001117550.1| diguanylate cyclase [Burkholderia vietnamiensis G4] gi|134136971|gb|ABO58085.1| diguanylate cyclase [Burkholderia vietnamiensis G4] Length = 492 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 14/193 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I +S++LG + L+ + + + L+R D L+GL N +F L + Sbjct: 300 IAVSVMLG----AQLRHRMRAESELVLLARTDGLTGLGNRRSFAEVLEREWRRARRARSV 355 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 S++F D+D FK ND +GH GD +A ++ + P+ R GGEEF + Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGDNIRRPVDSAARYGGEEFVVLLPDT 415 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALY 245 E AA +A +R I+ + H+T S G+A E +I AD+ALY Sbjct: 416 PEPGAARIAERIRAAIDELALEHVGSEHGHVTASIGLASWTPERDEEADNMIKAADRALY 475 Query: 246 VAKKSGRNRVVCF 258 A +GRN+V F Sbjct: 476 RANATGRNKVAAF 488 >gi|262275547|ref|ZP_06053357.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Grimontia hollisae CIP 101886] gi|262220792|gb|EEY72107.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Grimontia hollisae CIP 101886] Length = 498 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISS 121 LS+ I S + G I+ I++++ + R+ S D L+G+ N + Sbjct: 296 LSIAISSFSFEEHQGSIA--IIRDI-TDFKRLESDSMHDALTGVYNRRHIEERFEDEVKR 352 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 Y LS++ D+D FK +ND GH GDK + ++ L +GR GG+EF Sbjct: 353 AKRYARALSLLVVDLDNFKNLNDTEGHRAGDKGLVVAAEHLRSQLRKHDHIGRWGGDEFV 412 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPIST---II 237 +A +A +R+ E Q P H +T+S G+A + T + Sbjct: 413 VICPELDRADAIEIAERIRRRFEAQQF-----PWCHKMTMSIGVASLSPDTSVMTPRDLF 467 Query: 238 YRADQALYVAKKSGRNRVVCFSDIEN 263 ADQALY+AK+ GRNRV F D++ Sbjct: 468 EEADQALYLAKERGRNRVEHFFDLQR 493 >gi|149182127|ref|ZP_01860610.1| adenylate/guanylate cyclase [Bacillus sp. SG-1] gi|148850159|gb|EDL64326.1| adenylate/guanylate cyclase [Bacillus sp. SG-1] Length = 642 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 13/170 (7%) Query: 98 NRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 ++ LS D L+ + N H A+ ++L + +++++ DIDYFK ND +GH Sbjct: 460 EKLKNLSYRDQLTQIPNRRYFDEKYHEAWDAALMN-KSPIAVMYLDIDYFKLYNDTYGHE 518 Query: 150 VGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+ + ++ + ++ FV R+GGEEF A L S + LA R +IE I Sbjct: 519 AGDECLKLVAQSIEEIIQSCDGFVARMGGEEFIAVLLNQSPESIYQLAEKCRTMIEGLNI 578 Query: 209 ---NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 N + ++I A ++ K + +I AD+ LY AK++GRN + Sbjct: 579 PHENSKVSNRVTLSIGAAMSVANAKGKAADLISEADECLYEAKENGRNSI 628 >gi|145298909|ref|YP_001141750.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851681|gb|ABO90002.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 432 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 8/155 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F + + +S++ DID+FKQ+ND GH GD+ I L Sbjct: 268 DPLTGIANRRRFDELVKQEVQRCQRFGHTMSLLLLDIDHFKQVNDTHGHQQGDQAILSLV 327 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ +GR GGEEF +S A A +R I + + + I +T Sbjct: 328 RRIAKQLREVDILGRWGGEEFIILLPETSLDLAWASAERIRLAIASESHPLGADIEIPLT 387 Query: 220 ISAGI-AERCHKEPISTIIYRADQALYVAKKSGRN 253 +S GI A + ++ + ++ RAD ALY+AKK GRN Sbjct: 388 VSIGISASQGPQDNVDNMVRRADTALYLAKKQGRN 422 >gi|71281070|ref|YP_267881.1| GGDEF/EAL domain-containing protein [Colwellia psychrerythraea 34H] gi|71146810|gb|AAZ27283.1| GGDEF/EAL domain protein [Colwellia psychrerythraea 34H] Length = 637 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 5/165 (3%) Query: 99 RISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +I +LS +D L+GL N +AF+ ++L S N+ +++F D+D FK+IND+ GH GD++ Sbjct: 206 KIYELSNLDSLTGLYNRTAFLKHLKTALASSNKPFALLFIDLDGFKKINDSIGHQAGDQI 265 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++L + R GG+EF + E A ++ L +++ S Sbjct: 266 LKKSAERLKQWSFDTKLLCRWGGDEFLMVLADTDEVSAVGVSKQLIEVLSAPHNTEHSVL 325 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S+ TI + H + +I AD A+Y KK R+ V FS Sbjct: 326 SVGATIGIALYPE-HAKTEDRLIQSADMAMYYQKKQARSTVGVFS 369 >gi|332140752|ref|YP_004426490.1| response regulator receiver modulated diguanylate cyclase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550774|gb|AEA97492.1| response regulator receiver modulated diguanylate cyclase [Alteromonas macleodii str. 'Deep ecotype'] Length = 653 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 3/170 (1%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHP 149 L+I+ + L+ D L+G L A + SL + S + D+D FK+IND GH Sbjct: 483 LWIAKRQSDTLAERDSLTGALTRRAMLKSLKKALKSDSTSCVALLDVDNFKKINDKHGHL 542 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ L+ + + R GGEEF + +Q A + ++L + ++ Sbjct: 543 VGDEVLTTLTRTIQKRIRKSDKLCRYGGEEFLIYFSDTDQQSAKRILDELNASLSRQKLW 602 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + ++ S+G+ + + + TII D LY AK+ GR RV FS Sbjct: 603 SGTDQKFSVSFSSGLLDVNGETNLDTIIKACDDLLYKAKREGRARVAAFS 652 >gi|262377222|ref|ZP_06070447.1| WspR protein [Acinetobacter lwoffii SH145] gi|262307960|gb|EEY89098.1| WspR protein [Acinetobacter lwoffii SH145] Length = 568 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 10/162 (6%) Query: 99 RISQLSRIDCLSGLLNHSA---FISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 R+ ++ D L+GL N A +I + + +LS ++ DID+FKQ+ND +GH VGD Sbjct: 405 RLKNIAHSDSLTGLANRFALEEYIRFMENQPGQLSQTCLMIIDIDHFKQVNDQYGHIVGD 464 Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 +VI ++++L V T + V R GG+EF Q+A I+A+ +R + I + Sbjct: 465 QVIQLVAERLKANVRATDLLV-RYGGDEFLVLIENIQMQQALIVADKIRAEVVERYILTA 523 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G I I++S G+A T++ AD AL+ AK GRN Sbjct: 524 LGDQIQISVSIGVA--IGAVSWMTLLSNADDALFKAKAKGRN 563 >gi|229523522|ref|ZP_04412927.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229337103|gb|EEO02120.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] Length = 527 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 493 YLSKSKGRNRV 503 >gi|225851296|ref|YP_002731530.1| diguanylate cyclase with PAS/PAC sensor [Persephonella marina EX-H1] gi|225646109|gb|ACO04295.1| diguanylate cyclase with PAS/PAC sensor [Persephonella marina EX-H1] Length = 427 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 13/171 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPV 150 ++ +++ D L+ + N F ++ +Y E+ +S++ D+D+FK+ ND+FGH Sbjct: 254 RKLYEMTITDELTKVANRRFFQEAVEKELKRAYRERYPVSLLIVDVDHFKEYNDSFGHTA 313 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+ + +++ L V R GG+EF +SE A +A +R +E+ I Sbjct: 314 GDRCLCSVAEILKKYRKRSYDLVARYGGDEFIVVLPKASEDYAMNVAQMIRSDVEDLCIK 373 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P +T+S G+A +R + +I AD+ALY+AKK GRNRVV Sbjct: 374 -HIEPFNRVTVSIGVAVLNGKRIKGVTVKNLINTADKALYIAKKEGRNRVV 423 >gi|167583687|ref|ZP_02376075.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu] Length = 315 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 9/179 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQ 141 + +E + ++ + + D L+G+ N F L Y LS++ FD+D+FK Sbjct: 138 MQREREEAVAKLREHANCDGLTGIANRRFFEERLRDEFARWQRYGGNLSVLLFDLDHFKT 197 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND FGH VGD V+ ++ ++ + R GGEEFA + EA ++A +R Sbjct: 198 INDRFGHAVGDAVLREMALRVAGIVRAQDTFCRFGGEEFALLLPCTDLAEAMLVAEKVRC 257 Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I + ++ + G + +T S G A + ++ AD ALY AK+ GR+R V ++ Sbjct: 258 AIGVTPVD-AEGVRVPVTASVGGASAHAGAQACDVLVNEADAALYRAKRLGRDRSVAYA 315 >gi|217973294|ref|YP_002358045.1| PAS/PAC sensor-containing diguanylate cyclase [Shewanella baltica OS223] gi|217498429|gb|ACK46622.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS223] Length = 346 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 98/203 (48%), Gaps = 39/203 (19%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGH 148 + +++L+ D L+G+ N F L ++LS +V DID FK +ND +GH Sbjct: 138 AQTELNRLALTDELTGIANRRHFFQQLEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGH 197 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA--------AAALGSSEQEAAILAN-D 198 VGDK++ + Q + P + GRLGGEEFA AA + + LAN D Sbjct: 198 QVGDKILQHFT-QFISARTRPYDIFGRLGGEEFALLLPETTVDAAQKIVMRMMSSLANED 256 Query: 199 LRKIIENSQINISSGPS------IH--ITISAGIAE------------RCHKEPISTIIY 238 + I+ + Q S+G S IH I SA IA+ +C + ++ Sbjct: 257 ISAIVADFQYQFSAGVSALTPVIIHHGIDNSADIADVEQVALPVEIGSQCRSDA-EKLVA 315 Query: 239 RADQALYVAKKSGRNRVVCFSDI 261 AD+ALY AK GRNRVV + D+ Sbjct: 316 EADKALYQAKTLGRNRVVIWDDV 338 >gi|126641116|ref|YP_001084100.1| GGDEF [Acinetobacter baumannii ATCC 17978] Length = 390 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 13/184 (7%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEK--LSIVFF 134 L I+ IL+ I + + LS+ D L+ + N F + EK L+++F Sbjct: 199 LAEINEQILR---IEASELLHLSQQDALTQISNRRTFDEMFDFFYYRANQEKRPLAVLFI 255 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK ND +GH +GDKVI+ ++ + FV R GGEEF + Q A Sbjct: 256 DIDFFKNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARYGGEEFVVLLPETPAQGAYS 315 Query: 195 LANDLRKIIENSQI-NISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSG 251 +A ++ K IE I + +S S ++TIS G + K +I+ ADQALY AK+ G Sbjct: 316 VAANIYKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMGQDRLIHAADQALYRAKQLG 375 Query: 252 RNRV 255 RN++ Sbjct: 376 RNQI 379 >gi|187478626|ref|YP_786650.1| signaling protein [Bordetella avium 197N] gi|115423212|emb|CAJ49743.1| putative signaling protein [Bordetella avium 197N] Length = 450 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 8/168 (4%) Query: 97 YNRISQL-SRIDCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQINDNFGH 148 + R S L S D L+ LLN +S +Y K L+++ D+D+FK++ND GH Sbjct: 280 FERASHLESGRDTLTHLLNRKYLHVVMSKEVAYARKTSSPLAVLMVDVDHFKRVNDEHGH 339 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ + + + RLGGEEF + ++ +A +A +LR+ I + Sbjct: 340 DAGDLVLQQVGGMIATYSRGGDYTFRLGGEEFLVVLVDATATQALNIAENLRQRIAEKPL 399 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G I++S G+A ++ RAD ALY AK GRN V Sbjct: 400 TLPDGLHRRISVSIGVAAHDSHPDYQRLLKRADIALYAAKTRGRNTCV 447 >gi|117921874|ref|YP_871066.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117614206|gb|ABK49660.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 483 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 9/146 (6%) Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 H A S+ G+ + +V DID+FK+IND GH VGD ++ LS L V R Sbjct: 344 HRAAASTQGA----ICLVMLDIDFFKEINDTLGHSVGDTILMELSSVLQHCVRESDVVAR 399 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 GGEEF +S + L + I S+ + S + +T S GIA+ EP+ Sbjct: 400 WGGEEFVILCHNTSLEAVKSLCQRITTAI--SEYHFSG--DVQLTCSFGIAKLAANEPMQ 455 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260 + RAD+ALY AK GR++ +C D Sbjct: 456 SCFERADKALYQAKALGRDQ-ICVDD 480 >gi|330879018|gb|EGH13167.1| GGDEF domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 493 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 11/191 (5%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGS 124 LS+V+ I + L+ + S +L ++ L+R D LSGLLN F ++ L Sbjct: 30 LSMVVPFILLKRLMQRLQTSY-NDLLVAQALSDSLARHDLLSGLLNRRVFNEQLVARLQQ 88 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAA 183 + + ++ D+D FK IND GH VGD I +++ L G V RLGG+EF+ A Sbjct: 89 KSTQTAVFLIDLDKFKLINDTHGHAVGDAAICAVAESLRDATTGWQALVARLGGDEFSLA 148 Query: 184 ALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRAD 241 G Q E A LA ++ I S + P + ++ + G+A ++ RAD Sbjct: 149 VSGDFSQFELAALAENVLAKIAMSSAGL---PRVTLSATLGVAISPLDGSDAEVLLQRAD 205 Query: 242 QALYVAKKSGR 252 A+Y K GR Sbjct: 206 SAMYRGKNGGR 216 >gi|310778016|ref|YP_003966349.1| diguanylate cyclase with PAS/PAC sensor [Ilyobacter polytropus DSM 2926] gi|309747339|gb|ADO82001.1| diguanylate cyclase with PAS/PAC sensor [Ilyobacter polytropus DSM 2926] Length = 763 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 11/164 (6%) Query: 103 LSRIDCLSGLLNHSAF------ISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G+ N F I N+K +SI+ DID FK ND++GH GD+ + Sbjct: 598 LSIKDSLTGIYNRRGFEEMSERIFKESLRNKKNVSIIMLDIDKFKLYNDHYGHQAGDECL 657 Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSG 213 ++++L P VGR GGEEF ++ + A +A +RK IEN +I ++ S Sbjct: 658 KKIAEKLEKSCKRPSDIVGRYGGEEFIIFLPDTTLEGARTVAEKIRKNIENMEIEHVKSR 717 Query: 214 PSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S GI+ ++ + +I +AD+ LY AK+ GRNRV Sbjct: 718 HGGVVTVSLGISATVPNNEYEMEKLIGKADKMLYQAKELGRNRV 761 >gi|307727776|ref|YP_003910989.1| diguanylate cyclase [Burkholderia sp. CCGE1003] gi|307588301|gb|ADN61698.1| diguanylate cyclase [Burkholderia sp. CCGE1003] Length = 502 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 17/179 (9%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142 L++ ++ +R+++L++ D L+GL N A L + E+L S++F D D+FKQ Sbjct: 318 LRDRALAEDRLTELTQTDSLTGLKNRRALDEVLRNEWERLERNESCLSVLFLDADHFKQY 377 Query: 143 NDNFGHPVGDKVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND GH GDK + L+ Q G R GGEEF +S +A ++A + Sbjct: 378 NDKHGHAEGDKALRHLAKCITQRARRRGD--CAARYGGEEFVVVLPDTSSADALLIAEGI 435 Query: 200 RKIIENSQINISSGPSIHI---TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 R+ +E S G + T+S G A H + + AD A+Y AK++GR+ Sbjct: 436 RETLEKSWQVQHGGEKAGLHAFTVSIGCATGRPGHGATLEQLTKLADLAIYEAKRAGRD 494 >gi|260554189|ref|ZP_05826447.1| WspR [Acinetobacter sp. RUH2624] gi|260404695|gb|EEW98207.1| WspR [Acinetobacter sp. RUH2624] Length = 409 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 17/177 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL ++S LS+ D L+GL N +L + + L+I+ DID+FK ND Sbjct: 222 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDFFKPYND 281 Query: 145 NFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAI----LANDL 199 GH GD+ + ++ + + + V R GGEEF ++ Q+A I L N + Sbjct: 282 TLGHLKGDQCLKDIATAISSIAARSGDLVARYGGEEFLLLFPMTNAQQAQIQVERLMNAI 341 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254 +KI + ++ S S ++TIS G+A + + IS + RAD ALY AK +GRN+ Sbjct: 342 KKI---AIVHPCSSVSPYVTISVGVATTIPRLNDSISAFVSRADHALYQAKTNGRNQ 395 >gi|260843270|ref|YP_003221048.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009] gi|300819391|ref|ZP_07099588.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] gi|300925278|ref|ZP_07141172.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] gi|301327127|ref|ZP_07220400.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] gi|257758417|dbj|BAI29914.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009] gi|300418584|gb|EFK01895.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] gi|300527987|gb|EFK49049.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] gi|300846249|gb|EFK74009.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] gi|323163795|gb|EFZ49610.1| diguanylate cyclase domain protein [Escherichia coli E128010] gi|324019148|gb|EGB88367.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3] Length = 452 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441 >gi|116253904|ref|YP_769742.1| transmembrane sensory box GGDEF/EAL family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258552|emb|CAK09656.1| putative transmembrane sensory box GGDEF/EAL family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 737 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 26/227 (11%) Query: 50 LFYIGLTP----FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105 L +I +P + + ++++ L LV + + L++G+++G LK N + + Sbjct: 248 LVWISRSPGDIGYAQVRPMVIQALGLVGLFFVVLLVIGWLAGRRLK---AEENSAREEAL 304 Query: 106 IDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D LSGL N F+ + +++ D+D FK++ND++GH GD++I + Sbjct: 305 RDRLSGLSNRDGLGLAVDRFVVEARQTKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRAV 364 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LAND----LRKIIENSQINISSG 213 + L V+ + R+GG+EFA A L SE AA+ LA L + +E + + G Sbjct: 365 AAGLDVLIPQGAVLARIGGDEFAIAFLSDSENAAALQLAEQILDFLVEPLEIGRRVVVVG 424 Query: 214 PSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 SI I +S +G R ++ R+D A+Y AK++GR R+ + Sbjct: 425 ASIGIAMSPSGTIGR------EELVRRSDLAMYKAKEAGRARMTLYD 465 >gi|24374900|ref|NP_718943.1| sensory box protein [Shewanella oneidensis MR-1] gi|24349604|gb|AAN56387.1|AE015775_4 sensory box protein [Shewanella oneidensis MR-1] Length = 879 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 10/174 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148 S +++ L+ D L+ L N + L N +L+ VF D+D FK IND+FGH Sbjct: 444 SEAQLAHLAYFDPLTHLPNRMKLMIQLKQEIMHAKRLNSQLATVFIDVDLFKHINDSFGH 503 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQ 207 +GD+++ L+ +L + R+G +EF A G E A A N LR++ E Sbjct: 504 SIGDEMLVELAKRLRSQLQEQDVLSRIGSDEFVALISGIQYHEDATAAINQLRQVFEQPF 563 Query: 208 INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +S+G + +T + G++ T++ AD A+Y AK GRN +++ Sbjct: 564 V-VSTGDHLRLTATMGVSLYPSDGSNADTLLRNADAAMYRAKSEGRNNYAFYTE 616 >gi|330820697|ref|YP_004349559.1| diguanylate cyclase [Burkholderia gladioli BSR3] gi|327372692|gb|AEA64047.1| diguanylate cyclase [Burkholderia gladioli BSR3] Length = 562 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 9/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFK 140 S ++E ++ + ++ D L+ L N AF + G + + ++ D+D+FK Sbjct: 381 SRMRERASLAEKLKRQAQTDALTKLFNRRAF-ETFGQIKLRGADPAGQPFLILLDLDHFK 439 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND FGHPVGD V+ ++D L V R GGEEF A LA L Sbjct: 440 SINDRFGHPVGDGVLVKVADALASQVRPGDLVARFGGEEFVVLLHAVDVAAALSLAERLL 499 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I + + G ++ +T S G+A + + ++ AD ALY AK+ GR+R+ F Sbjct: 500 AAIRAVAVFAADGTAVPVTASLGVAS-GSQLSLRQLLSHADLALYEAKRLGRDRIRMF 556 >gi|311696320|gb|ADP99193.1| two-component response regulator [marine bacterium HP15] Length = 567 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 84/171 (49%), Gaps = 12/171 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 ++S L D L+GLL HS L + S+ D+DYFKQ+ND +GH Sbjct: 397 RQLSDLMNRDSLTGLLKHSLIKQELEKELARCRRFGHLSSVAMIDLDYFKQVNDTWGHRY 456 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQIN 209 GD VI L++ L +GR GGEEF S Q AA L L+ I E+ S++ Sbjct: 457 GDIVIRALANLLRNRLRETDMIGRYGGEEFMVVLPDCSVQAAADL---LKSIGESFSELV 513 Query: 210 ISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + G + +T+SAGIA + + ADQALY K GRN V +S Sbjct: 514 FAVGEKNFQVTLSAGIAGVNEFPSGAEALEAADQALYQCKHEGRNGVAIYS 564 >gi|304408789|ref|ZP_07390410.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS183] gi|307302792|ref|ZP_07582547.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica BA175] gi|304352610|gb|EFM17007.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS183] gi|306913152|gb|EFN43574.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica BA175] Length = 346 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 98/203 (48%), Gaps = 39/203 (19%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGH 148 + +++L+ D L+G+ N F L ++LS +V DID FK +ND +GH Sbjct: 138 AQTELNRLALTDELTGIANRRHFFQQLEHEIKRLSRLQLPLCLVMMDIDNFKLVNDRYGH 197 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA--------AAALGSSEQEAAILAN-D 198 VGDK++ + Q + P + GRLGGEEFA AA + + LAN D Sbjct: 198 QVGDKILQHFT-QFISARTRPYDIFGRLGGEEFALLLPETTVDAAQKIVMRMMSSLANED 256 Query: 199 LRKIIENSQINISSGPS------IH--ITISAGIAE------------RCHKEPISTIIY 238 + I+ + Q S+G S IH I SA IA+ +C + ++ Sbjct: 257 ISAIVADFQYQFSAGVSALTPVIIHHGIDNSADIADVEQVALPVETGSQCRSDA-EKLVA 315 Query: 239 RADQALYVAKKSGRNRVVCFSDI 261 AD+ALY AK GRNRVV + D+ Sbjct: 316 EADKALYQAKTLGRNRVVIWDDV 338 >gi|297564629|ref|YP_003683601.1| diguanylate cyclase [Meiothermus silvanus DSM 9946] gi|296849078|gb|ADH62093.1| diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Meiothermus silvanus DSM 9946] Length = 560 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +LS D L+GL N L Y LS+ D+D FKQIND H VGD+ Sbjct: 399 ERLSLEDALTGLYNRRYLDGRLAEEFIRARRYQHPLSVAIADLDNFKQINDKLSHAVGDE 458 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS- 212 + ++ L V R GGEEFA L +SE++A + +R I ++ S+ Sbjct: 459 ALRTVARLLRQCCRETDLVARYGGEEFALVLLEASEEQARSICEKIRSAI--AEYPWSTV 516 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P + +T+S G+ E ++ AD+ LY AK G+NRVV Sbjct: 517 HPELKVTVSIGLCSDLGLESHQHMLAEADRNLYRAKHLGKNRVV 560 >gi|297578961|ref|ZP_06940889.1| GGDEF family protein [Vibrio cholerae RC385] gi|297536555|gb|EFH75388.1| GGDEF family protein [Vibrio cholerae RC385] Length = 537 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 325 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 384 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 385 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 444 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 445 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 502 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 503 YLSKSKGRNRV 513 >gi|119471574|ref|ZP_01613988.1| hypothetical GGDEF family protein [Alteromonadales bacterium TW-7] gi|119445517|gb|EAW26803.1| hypothetical GGDEF family protein [Alteromonadales bacterium TW-7] Length = 348 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 12/184 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----YNEKLS------IVFFDIDYF 139 +K+L + N + + D L+G N F S + Y+E+ + ++ FDID+F Sbjct: 165 IKDLKEALNLSKEAADTDPLTGFYNRGKFDSDINDFCREYSEQTTESSLAALIMFDIDHF 224 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+ ND+FGH GD+VI ++ ++ R GGEEF A + + A + Sbjct: 225 KRFNDDFGHQKGDEVIKLVAKKVKENLTDKAKAYRYGGEEFCITAYFDTINDLVAFAECI 284 Query: 200 RKIIENSQINISSGPSIHITISA--GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 R+ I I + ISA G+A S ++ RAD+ALY+AK GRNRV Sbjct: 285 RQEIAKLAIRKKQDVNNKRAISASFGLAMLRPFTKSSVLVERADRALYIAKTHGRNRVEI 344 Query: 258 FSDI 261 DI Sbjct: 345 APDI 348 >gi|118589104|ref|ZP_01546511.1| putative diguanylate cyclase (GGDEF) [Stappia aggregata IAM 12614] gi|118438433|gb|EAV45067.1| putative diguanylate cyclase (GGDEF) [Stappia aggregata IAM 12614] Length = 353 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 78/135 (57%), Gaps = 2/135 (1%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ DID+FK+ ND +GH GD+V+ ++ + R GGEEFA + Sbjct: 210 SLLMTDIDHFKKFNDTYGHQTGDQVLRLVALAVKQNIKAQDIACRYGGEEFAIILPHAEL 269 Query: 190 QEAAILANDLRKIIENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVA 247 ++AA++ ++R + + + + S+G ++ +TIS GIA + +I+ RAD+ALY+A Sbjct: 270 EDAAVIGENIRNAVMSKELVKRSTGENLGRVTISVGIATFESTDTAHSIVSRADEALYLA 329 Query: 248 KKSGRNRVVCFSDIE 262 K +GRN V ++E Sbjct: 330 KNAGRNVVKTERELE 344 >gi|120612883|ref|YP_972561.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gi|120591347|gb|ABM34787.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 395 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 105/201 (52%), Gaps = 24/201 (11%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYN 126 ++ ++L+LG ++ ++ + +++ L++ D L+G+LN F ++ + Sbjct: 192 LAANVTLVLGTMA-VLVAWRTEAEDKLRALAKTDALTGVLNRRGFDVRGRALLAHALRHG 250 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AA 183 +++ V D+D+FK++ND GH GD V+AF + L T GR+GGEEFA A Sbjct: 251 LRVTAVMLDVDHFKRVNDTHGHGTGDHVLAFFARLLQDATRTGDVAGRIGGEEFAVLLAH 310 Query: 184 ALGSSEQEA------AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EP-IS 234 A G E+ A LA D + + ++ S+G + T+ AG+ + P ++ Sbjct: 311 APGDRAAESFDRRLRARLAADSPQAV-GFPVSYSAGAA---TLEAGLPDPGAMAVAPLLA 366 Query: 235 TIIYRADQALYVAKKSGRNRV 255 ++ RAD LY AK++GR R+ Sbjct: 367 DLMARADATLYEAKRAGRGRL 387 >gi|229511287|ref|ZP_04400766.1| GGDEF family protein [Vibrio cholerae B33] gi|229608047|ref|YP_002878695.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|229351252|gb|EEO16193.1| GGDEF family protein [Vibrio cholerae B33] gi|229370702|gb|ACQ61125.1| GGDEF family protein [Vibrio cholerae MJ-1236] Length = 529 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 317 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 376 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 377 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 436 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 437 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 494 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 495 YLSKSKGRNRV 505 >gi|332534442|ref|ZP_08410281.1| putative two-component response regulator [Pseudoalteromonas haloplanktis ANT/505] gi|332036095|gb|EGI72571.1| putative two-component response regulator [Pseudoalteromonas haloplanktis ANT/505] Length = 299 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 21/174 (12%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 + L+ ID L+ + N +L + LS++ DID+FK+ ND +GH GD Sbjct: 130 LEMLASIDGLTEIPNRRYLDENLAREWRRSKRSGTPLSVLLMDIDHFKRYNDCYGHRAGD 189 Query: 153 KVIAFLSDQLVVV--FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + + ++ L G+ F+ R GGEEFAA G + EA AN LR + + +NI Sbjct: 190 ECLKDVAQALAAQCERGSD-FIARYGGEEFAAVLPGIDKHEALEFANKLRNAV--NALNI 246 Query: 211 SSGPSI---HITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S+ HITIS GIA + + E ++ AD LY AK +GR+R+V Sbjct: 247 EHKASLNADHITISIGIATTQSGKVYAE--QALLEEADLGLYAAKDAGRDRIVA 298 >gi|309778002|ref|ZP_07672944.1| putative GGDEF domain/EAL domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914291|gb|EFP60089.1| putative GGDEF domain/EAL domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 453 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 8/163 (4%) Query: 104 SRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 +++D + +LN +AF + + + NEK + DID FK IND GH VGD+VI Sbjct: 276 NKLDPFTEVLNKTAFRTHVLDVIRDKNKNEKGAFFILDIDNFKMINDTCGHLVGDQVIVE 335 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++ L VGR+GG+EF L +Q I N ++II+N + +G H Sbjct: 336 VAANLQNNLREDDLVGRIGGDEF-CIYLQHIKQIDDIEKN-AQRIIDNIRTMQLTGYHRH 393 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T+S GI ++ I +AD ALY AK +GR++ V + + Sbjct: 394 LTVSMGICIVDAEKDFEDIFMKADHALYEAKANGRDQFVVYKN 436 >gi|255093223|ref|ZP_05322701.1| putative signaling protein [Clostridium difficile CIP 107932] Length = 284 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 37/282 (13%) Query: 8 FLSIWLCHEKNLESFSPHTFMIYFSIF-----FSI--FIATVIFIANIFLFYIGLTPFYG 60 F +W C L+ + ++ I FS+ F +VI FLF P G Sbjct: 3 FFCLWGCVITLLDQLGGNDLSVFSYIMLAAAAFSVLKFGESVIVFGGCFLFLNLFLP--G 60 Query: 61 LEYILVENLSLVIISITISLLLGYISGSILK-ELFISYNRI---SQLSRIDCLSGLLNHS 116 ++ I S ++ + I+ L ++S + + +F Y+++ Q I ++ LLN Sbjct: 61 IQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTYYDKLLISQQYEEISHINNLLNDK 120 Query: 117 AFISSLGSYN-------------------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 L N E ++ + DIDYFKQ NDN+GH GD + Sbjct: 121 VMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDIDYFKQFNDNYGHQKGDYCLQN 180 Query: 158 LSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ ++++ F + R GGEEF E +A + + LRKIIE+ P Sbjct: 181 IA-KVILDFTSSENEHAIRYGGEEFFICIFNCDETDAKLKSECLRKIIESCNFERDDVPL 239 Query: 216 IHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 +T+S G+ + ++ I+ I D+ALY AK+ GRN V Sbjct: 240 KCVTVSIGVYTKKIEKAITLNEFISNCDKALYTAKEQGRNCV 281 >gi|117621295|ref|YP_855610.1| sensory box/GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562702|gb|ABK39650.1| sensory box/GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 738 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 9/194 (4%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK 128 + IS +I L++ I+ L + + + + ID L+GLLN F +S + N++ Sbjct: 277 ICISTSIILIMRKKETHIIHALQKTVDELRKSKLIDPLTGLLNREGFKNILSEKCNSNKE 336 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 + + D+D FK+IND GH VGD V+ S ++ + G V RLGG+EFA G Sbjct: 337 FLVAYADLDKFKEINDFMGHAVGDLVLKISSARMSSILGMNSPVARLGGDEFAFVIPG-- 394 Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK-EPISTIIYRADQALYV 246 E ++ +++IE I+ G + I IS G++ H+ + ++ +AD A+Y Sbjct: 395 --EKSMALQRCQELIEKITQPIALGERTFSIGISIGVSSYPHQATALEELLDKADMAMYA 452 Query: 247 AKKSGRNRVVCFSD 260 AK S V F + Sbjct: 453 AKCSHDRAPVYFEE 466 >gi|86357767|ref|YP_469659.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] gi|86281869|gb|ABC90932.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] Length = 753 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDN 145 +L + R+ LS D L+GL N F+ + S ++L ++ D+D FK+IND Sbjct: 310 KLVRARQRLEHLSLHDALTGLPNRR-FVDQMISQPPRPDPQDRLILIHIDLDRFKEINDT 368 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIE 204 GH GD V+ + +L + G R+GG+EF A+ + E +AA LA R+I++ Sbjct: 369 KGHAGGDMVLQTTASRLADLTGPNDVAARIGGDEFVFASWSTDPEPKAAELA---RQIVD 425 Query: 205 NSQINI-SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 Q I G + S G+A E + ++ AD ALY AKK+GR R F++ Sbjct: 426 ALQQTIFIDGAGYVVGASVGVAWETESARDRDLGQLLLNADLALYEAKKAGRGRAAVFTE 485 >gi|54307823|ref|YP_128843.1| putative c-di-GMP phosphodiesterase A-related protein [Photobacterium profundum SS9] gi|46912246|emb|CAG19041.1| putative c-di-GMP phosphodiesterase A-related protein [Photobacterium profundum SS9] Length = 679 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 17/182 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 E + ++ QL D L+GL N F + SL + L +++ DID FK IND+ GH Sbjct: 241 EHMMQQGQVEQLVHTDPLTGLYNRHGFSRRLESLITNETPLVMLYLDIDNFKNINDSLGH 300 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD+V+ +S +L + +G LGG+EF L E + A ++ I Sbjct: 301 HIGDRVLQEISQRLRRLLPENAIIGHLGGDEF-GIVLSEPEHDRA------GDLVAQQVI 353 Query: 209 NISSGP------SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 ++ + P S H+ S G ++ + ++ AD A+Y AK GRNR+V F++ Sbjct: 354 SLINQPFDLHHFSKHLACSIGMVSYPGNGNDARILLQNADTAMYEAKNRGRNRLVKFNEA 413 Query: 262 EN 263 N Sbjct: 414 MN 415 >gi|332279786|ref|ZP_08392199.1| diguanylate cyclase [Shigella sp. D9] gi|332102138|gb|EGJ05484.1| diguanylate cyclase [Shigella sp. D9] Length = 320 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 15/161 (9%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 153 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 212 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF + A LA +R+ +E N + I + Sbjct: 213 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ--KV 270 Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 I+I A + + P IYR AD ALY AK++GRN+VV Sbjct: 271 TISIGAVVTQENALNPNE--IYRLADNALYEAKETGRNKVV 309 >gi|310658000|ref|YP_003935721.1| hypothetical protein CLOST_0690 [Clostridium sticklandii DSM 519] gi|308824778|emb|CBH20816.1| membrane protein of unknown function [Clostridium sticklandii] Length = 652 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 11/163 (6%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S ID ++GL N + + LSI+ D+D+FK ND +GH GD + Sbjct: 487 SLIDSMTGLANRRYLEQRIMYEYARMKRNWSNLSIIMIDVDFFKLYNDTYGHVQGDICLK 546 Query: 157 FLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGP 214 ++ L V V R GGEEF + + A+ILA++++ IEN +I +++S Sbjct: 547 TIAATLRSTVKRQTDLVARYGGEEFVVLLPETDKYSASILADNIKTNIENLEIEHMTSTI 606 Query: 215 SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 S ++T+S GIA +S +I +AD ALY AKK GRN + Sbjct: 607 SDYVTVSIGIATFTKDCNVSCEDLIQKADVALYQAKKIGRNSI 649 >gi|297519769|ref|ZP_06938155.1| putative diguanylate cyclase [Escherichia coli OP50] Length = 297 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 130 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 189 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 190 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 249 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 250 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 286 >gi|270262480|ref|ZP_06190751.1| diguanylate cyclase [Serratia odorifera 4Rx13] gi|270043164|gb|EFA16257.1| diguanylate cyclase [Serratia odorifera 4Rx13] Length = 520 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 13/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+ +D L+GL N F ++ ++++ DIDYFKQ ND +GH G Sbjct: 346 RLEELALLDGLTGLANRRQFDIALKNELARAARNYRSVALLMLDIDYFKQYNDIYGHVAG 405 Query: 152 DKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D+ + + L + + + R GGEE + + Q A I A+ + + + +I Sbjct: 406 DQCLQQIGQMLKGLASRSNDIMARYGGEEMSIILPDTDAQGALIFADRVMQAVRELKIPH 465 Query: 211 SSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVC 257 P IT+S GI + + PI I AD ALY AKK G+NR+VC Sbjct: 466 QGNPHGVITLSIGICAKVPHMYNDTPIG-FINMADSALYQAKKEGKNRIVC 515 >gi|226307763|ref|YP_002767723.1| hypothetical protein RER_42760 [Rhodococcus erythropolis PR4] gi|226186880|dbj|BAH34984.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 768 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 17/186 (9%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139 GS + E+ + + I ++ R+D L+G+ N +F + L + L++ D+D F Sbjct: 333 GSDVTEVKLQSDEIVRMGRVDALTGMPNRHSFWTELERLLRDPYTSESGLALAMLDLDNF 392 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILAN 197 K +ND GH VGD V+ ++D+L G RLGG+EFA +G S Q +L Sbjct: 393 KSVNDTLGHTVGDAVLREVADRLSEAGGMSQLFARLGGDEFAILFTDMGDSSQVRTLLGR 452 Query: 198 ---DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L + I + + G SI + A + + ++ AD AL+ AK+SGR Sbjct: 453 YIETLHEPITVAGTRLEIGCSIGYYLPAELPSSADE-----MMGAADLALFAAKESGRGA 507 Query: 255 VVCFSD 260 V + D Sbjct: 508 VREYRD 513 >gi|254521982|ref|ZP_05134037.1| diguanylate cyclase [Stenotrophomonas sp. SKA14] gi|219719573|gb|EED38098.1| diguanylate cyclase [Stenotrophomonas sp. SKA14] Length = 512 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 85/183 (46%), Gaps = 20/183 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 E R++ + D L+G+LN + L G LS+ F D+D FK+IND Sbjct: 317 EFEARAKRLADQAHRDALTGVLNRRQLEAVLEQEFLRAGRQGWPLSVAFIDLDDFKKIND 376 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILANDL 199 GH GD+V+ + +L V R GGEEF A +SE A +LAN Sbjct: 377 AHGHLTGDEVLRAFAGKLQGQLRNSDTVARFGGEEFVALLPNTSETVALDVIRRVLAN-- 434 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256 I+ + GP + +T SAG+A + E + ++ AD LY +K GRNRV+ Sbjct: 435 --IVATPMAELEGGP-LFVTFSAGVATQGGYERFADVQDLLRAADDVLYRSKNLGRNRVI 491 Query: 257 CFS 259 S Sbjct: 492 ARS 494 >gi|119897735|ref|YP_932948.1| response regulator [Azoarcus sp. BH72] gi|119670148|emb|CAL94061.1| probable response regulator [Azoarcus sp. BH72] Length = 656 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 12/183 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 EL I+ R+ + + D L+G N I + LS + D+D FKQIND Sbjct: 474 ELAITNRRLQEAALTDALTGFPNRRYAIDRMQQEWTAAKRNGRPLSCMIIDLDGFKQIND 533 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH VGD V+ +D L + + R GG+EF + + A LR ++ Sbjct: 534 TYGHDVGDMVLRQSADALRLALRGQDVICRTGGDEFLVICPDTDLAQGLSCAERLRAAVD 593 Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 I ++ ++ +TIS G+A R + ++ RADQ Y+AK+ GRN C + ++ Sbjct: 594 ALAI-VTGADTLGLTISIGVAVRDDSMADLDALMKRADQGAYLAKQRGRN---CVASVQG 649 Query: 264 NTC 266 Sbjct: 650 GAA 652 >gi|225571389|ref|ZP_03780385.1| hypothetical protein CLOHYLEM_07487 [Clostridium hylemonae DSM 15053] gi|225159865|gb|EEG72484.1| hypothetical protein CLOHYLEM_07487 [Clostridium hylemonae DSM 15053] Length = 330 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 11/174 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNF 146 ++E F + S +D ++G+ NH +F +L D+D FK +ND + Sbjct: 154 VREAFELVELFRKRSEMDLMTGIYNHDSFQRKTEERLMKGNQLCFYIIDLDDFKSVNDTY 213 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD ++ L+ + F VGRLGG+EFA + QE LR++ Sbjct: 214 GHSAGDAILKCLAKLIRKYFPEDAVVGRLGGDEFAVCEVCPGTQEER--KERLRQMRAEY 271 Query: 207 QINISSG--PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 Q +S G + S GIAE+ KE ++ I RAD+ALY AK+ G++R Sbjct: 272 Q-QLSGGLLKENPCSYSVGIAEK-GKESMTYRQIFERADEALYAAKQRGKDRTA 323 >gi|163800819|ref|ZP_02194719.1| putative GGDEF family protein [Vibrio sp. AND4] gi|159175168|gb|EDP59965.1| putative GGDEF family protein [Vibrio sp. AND4] Length = 655 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 11/162 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 SR+D L+G LN SA I + S N + +V D+D FK IND +GHP GD V+ Sbjct: 477 SRLDRLTGSLNRSAIIDKISSQTISAPENMRYVLVLIDMDRFKSINDKYGHPTGDLVLKH 536 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + + ++GRLGGEEF E + L+K I Q S++ Sbjct: 537 VCQAVQAKLNKGEYIGRLGGEEFILLLKNVDEIDVPFRIQSLQKSILEKQFVSKQNESLY 596 Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256 +T A +A +P+S+ +Y DQAL +KK+G N +V Sbjct: 597 VT--ASLAYLSTSKPLSSFDRLYSILDQALSQSKKNGHNALV 636 >gi|66046557|ref|YP_236398.1| GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63257264|gb|AAY38360.1| GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 548 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 23/181 (12%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144 EL I+ N + ++ D L+ L N F ++L S N+ ++I+ DID+FKQ ND Sbjct: 352 ELNIARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYND 411 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199 +GH GD + Q+ + G + R GGEEF + A LA + Sbjct: 412 TYGHLQGDDCLR----QVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKI 467 Query: 200 RKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNR 254 R IE S I SS P ++IS+G+ AE+ K+ + + AD+ LY+AK GRNR Sbjct: 468 RSSIEASCIEHSSSPLGRLSISSGVVAINAAEK--KDAHTAALKEADRLLYLAKTKGRNR 525 Query: 255 V 255 V Sbjct: 526 V 526 >gi|51246567|ref|YP_066451.1| hypothetical protein DP2715 [Desulfotalea psychrophila LSv54] gi|50877604|emb|CAG37444.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 382 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 10/163 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GLLN + L + ++ L++ DID+FK++ND GH GD V Sbjct: 198 ELASRDELTGLLNRRKIMEILDTEIKRAADNKTALTLCLVDIDHFKKVNDVHGHSAGDTV 257 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++D + VGR GGEEF +S EA+++ +R+ I + S Sbjct: 258 LRYVADTIRRGIRKADRVGRYGGEEFCILLPHTSISEASLVLERIRQDIAAMTFPLDSSD 317 Query: 215 SIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255 + ++IS G + + P +I AD ALY AK+SGRNR+ Sbjct: 318 ELSLSISLGQVQYAPAIRSP-RQLIDLADTALYRAKRSGRNRL 359 >gi|330822768|ref|YP_004386071.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans K601] gi|329308140|gb|AEB82555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alicycliphilus denitrificans K601] Length = 1100 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 89/169 (52%), Gaps = 10/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI LS D L+GLLN +F I G+ + +LS+++FD+D FK IN++ GH G Sbjct: 666 RIQALSNFDTLTGLLNKKSFDERLALAIERAGASHGRLSMLWFDLDNFKLINESLGHTAG 725 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ +++L GT + R G+ F A + + A++A + ++++ + Sbjct: 726 DELLVEAANRLRSCLGTQNALARYSGDAFVAIVPQADQASVALMAQEALRLLQTA--TSV 783 Query: 212 SGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259 G + ++ SAG+A + T+ A+ A+Y K+ GRN + F+ Sbjct: 784 QGHPVSVSASAGVAVYPDDARTAGTLASAAELAMYRVKEDGRNGLRFFA 832 >gi|325528192|gb|EGD05373.1| putative diguanylate cyclase [Burkholderia sp. TJI49] Length = 341 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNF 146 ++ I L+R D L+GL N + LG + S +++ D+D FK IND F Sbjct: 162 LTERHIRHLARHDALTGLPNRHELHAELGRMLAQRSPLPDVAAAVMYLDLDGFKAINDRF 221 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+V+ ++++L R+GG+EF A G++ + LA ++ + I ++ Sbjct: 222 GHQAGDEVLMQVAERLGRTLLNGELAARIGGDEFVVAIDGTTTHACSTLAAEIIRQI-SA 280 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +S G ++ IS GIA + +I +AD ALY AK +G+ Sbjct: 281 PYTLSIGETVSFGISIGIALDDGRRSPDELIRQADSALYDAKSAGKG 327 >gi|323973267|gb|EGB68457.1| GGDEF domain-containing protein [Escherichia coli TA007] Length = 301 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 134 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 193 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 194 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 253 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 254 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 290 >gi|304407948|ref|ZP_07389598.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] gi|304342967|gb|EFM08811.1| diguanylate cyclase [Paenibacillus curdlanolyticus YK9] Length = 590 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 6/156 (3%) Query: 105 RIDCLSGLLNHSAFISSLGSY-NEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 R D L+GL N F + + + +++L +++ D+D FK IND FGH GD+V+ L++ Sbjct: 435 RHDSLTGLFNRRMFDNVIQDWVDQRLPFALLLLDVDNFKTINDTFGHLTGDEVLKKLAET 494 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 ++ R GGEEF + E LA LR+ + + P IT+S Sbjct: 495 MLAASREEDVCFRYGGEEFGILLQRDTADELYALAEQLRQNVHGLRGKDLDLPP--ITVS 552 Query: 222 AGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 GIA E S++I RAD ALY +K G++RV Sbjct: 553 IGIASLHVMDESPSSVIERADAALYESKARGKDRVT 588 >gi|319760863|ref|YP_004124800.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|317115424|gb|ADU97912.1| diguanylate cyclase [Alicycliphilus denitrificans BC] Length = 1100 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 89/169 (52%), Gaps = 10/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI LS D L+GLLN +F I G+ + +LS+++FD+D FK IN++ GH G Sbjct: 666 RIQALSNFDTLTGLLNKKSFDERLALAIERAGASHGRLSMLWFDLDNFKLINESLGHTAG 725 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ +++L GT + R G+ F A + + A++A + ++++ + Sbjct: 726 DELLVEAANRLRSCLGTQNALARYSGDAFVAIVPQADQASVALMAQEALRLLQTA--TSV 783 Query: 212 SGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259 G + ++ SAG+A + T+ A+ A+Y K+ GRN + F+ Sbjct: 784 QGHPVSVSASAGVAVYPDDARTAGTLASAAELAMYRVKEDGRNGLRFFA 832 >gi|227081547|ref|YP_002810098.1| GGDEF family protein [Vibrio cholerae M66-2] gi|298498540|ref|ZP_07008347.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|227009435|gb|ACP05647.1| GGDEF family protein [Vibrio cholerae M66-2] gi|297542873|gb|EFH78923.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 537 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 325 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 384 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 385 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 444 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 445 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 502 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 503 YLSKSKGRNRV 513 >gi|226943291|ref|YP_002798364.1| intracellular signalling protein [Azotobacter vinelandii DJ] gi|226718218|gb|ACO77389.1| intracellular signalling protein with diguanylate cyclase and phosphodiesterase activities [Azotobacter vinelandii DJ] Length = 586 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 32/216 (14%) Query: 72 VIISITISLLLGYISGSILKELFI----SYNRISQLSRIDCLSGLLNHSAF-------IS 120 + I +++ ++ ++L + S++RI QL+ D L+ L N I+ Sbjct: 122 IAIDVSVQTEREEVARQRCRQLMLEREESHDRIRQLAFYDPLTDLPNRGLLLIQADQAIA 181 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 L+++FFD+D FK IND GHP GD ++ ++ +L T VGRL G+EF Sbjct: 182 RARRERTALNVLFFDLDRFKLINDTLGHPAGDLMLRTIAQRLRSELRTTDIVGRLAGDEF 241 Query: 181 AAAALGSSEQEAAILAN-DLRKIIE-----NSQINIS---SGPSIHITISAGIAE-RCHK 230 +LA+ DLR+ E Q++ S +G ++ + S GI+ Sbjct: 242 -----------VVVLADCDLRQTTETIRRIQKQLSASCQIAGATLAPSASIGISRFPDDG 290 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 E + T++Y AD A+Y AK GR + FS+ N Sbjct: 291 EDMETLLYYADLAMYQAKSKGRGQFSFFSEEMNRQA 326 >gi|218509758|ref|ZP_03507636.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5] Length = 195 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 67/125 (53%), Gaps = 1/125 (0%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + FDID FKQIND FGH GD V+ + ++ GR+GGEEF +S + Sbjct: 69 LAVFDIDKFKQINDRFGHHAGDLVLRDFAHRIHQNVRRNDCFGRVGGEEFLLVMPSTSPE 128 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +A + + +I S+ ++ P T SAGIA + S + RADQALY AK S Sbjct: 129 DALDMVERMLTVIRFSR-PLADSPDFSYTCSAGIAASLPSDSASELYRRADQALYDAKMS 187 Query: 251 GRNRV 255 GR+RV Sbjct: 188 GRDRV 192 >gi|254456786|ref|ZP_05070214.1| sensory box/ggdef family protein [Campylobacterales bacterium GD 1] gi|207085578|gb|EDZ62862.1| sensory box/ggdef family protein [Campylobacterales bacterium GD 1] Length = 335 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 14/170 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 SI +L +YNR+ ++ + H A Y + SI+ DID+FK INDN+G Sbjct: 176 SITDKLTQTYNRL----HLENIFAQETHKA-----KRYGDTYSIIIMDIDFFKPINDNYG 226 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+V+ + L +GR GGEEF ++ +A +A LR IE + Sbjct: 227 HDVGDQVLIDIVQVLKSHIRDIDVLGRWGGEEFLIICTKTNIDQAYTVAEKLRVAIERYE 286 Query: 208 INISSGPSIHITISAGIAERCHKEPISTI-IYRADQALYVAKKSGRNRVV 256 ++ IT S G++E + S + + RAD ALY +K +GRN V Sbjct: 287 FDVIG----KITGSFGVSEYKQSDSNSDVAVKRADDALYTSKDAGRNLVT 332 >gi|170740237|ref|YP_001768892.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium sp. 4-46] gi|168194511|gb|ACA16458.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium sp. 4-46] Length = 1034 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +RI L++ D L+ L N F L + + ++++ D+D FK +ND GHPVGD Sbjct: 599 DRIRFLAQHDPLTRLPNRVLFRERLDAMMRADAPDATALLYLDLDAFKNVNDTLGHPVGD 658 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++A + +L G V RLGG+EFA A +E EAA A R I + S + Sbjct: 659 ALLAAVGARLGACVGEGGVVARLGGDEFAVAC---AEGEAAAQALATRIIAQLSAPYALA 715 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G ++ + S GIA T++ AD ALY AK GR F Sbjct: 716 GRTVQVGASVGIAVSGPEARDADTLLRHADMALYEAKGRGRGLACVF 762 >gi|66045521|ref|YP_235362.1| GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63256228|gb|AAY37324.1| GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 555 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 15/172 (8%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 361 DKLTGLANRRRFDQFLEVEFKRARRERSPLSLILIDADHFKRYNDHYGHLAGDECLIALA 420 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A + + I + QI + P + Sbjct: 421 RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILRAIRDEQIEHPASPFGIV 480 Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 TIS G+A +R + +I AD+ALY AK GRNRV S+I +T Sbjct: 481 TISLGVATFVGTDRQLDQ--RGLIELADRALYAAKSQGRNRVNVASEIATST 530 >gi|319650990|ref|ZP_08005125.1| hypothetical protein HMPREF1013_01734 [Bacillus sp. 2_A_57_CT2] gi|317397346|gb|EFV78049.1| hypothetical protein HMPREF1013_01734 [Bacillus sp. 2_A_57_CT2] Length = 422 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 10/195 (5%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-- 126 +SL I++ +S ++S S + + I ++ Q++ D L+G+ N + + N Sbjct: 210 ISLFILNYLVSR--SFLSKSQMLQNKIERDKFEQMAYTDFLTGVFNRAYMDKKMTELNQS 267 Query: 127 -EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 E ++IV DID FK+IND++ H VGD+ I +D L ++ R GGEEF Sbjct: 268 AEHIAIVVADIDKFKRINDSYNHAVGDQAIRHFADSLKSYLSKDDYLFRSGGEEFTIIMR 327 Query: 186 GSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKE----PISTIIYRA 240 S +E LA +RK IENS + SI ++ +A +K I A Sbjct: 328 FRSYEECLNLAQKIRKGIENSTFHADFKDQSISLSYTASFGLFYYKVNKLLSIEKAYVYA 387 Query: 241 DQALYVAKKSGRNRV 255 DQ L +K G+NR+ Sbjct: 388 DQLLLQSKDMGKNRL 402 >gi|307552849|gb|ADN45624.1| inner membrane protein YcdT [Escherichia coli ABU 83972] Length = 479 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI Sbjct: 309 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 364 Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212 +V + G + R+GGEEF + A LA +R+ +E N + I Sbjct: 365 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 424 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 425 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 465 >gi|302036588|ref|YP_003796910.1| response regulator [Candidatus Nitrospira defluvii] gi|300604652|emb|CBK40984.1| Response regulator, contains GGDEF domain [Candidatus Nitrospira defluvii] Length = 334 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 8/175 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 ++++L + + +LS +D L+G+ N F L + LS++ DIDYFK Sbjct: 144 EVMRQLQEANQMLLRLSCLDGLTGITNRRQFDDFLDQEWRRAARESTPLSLIMLDIDYFK 203 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND+ GH GD+ + ++ + P V R GG+EF G++ AA +A+ L Sbjct: 204 TYNDSHGHQAGDECLRQVAQLISSHVNRPGDLVARYGGDEFVIVLPGTTVDGAAQVADTL 263 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 R+ + +++ +G + I++ + +I ADQALY AK+ GRNR Sbjct: 264 RRKVCEAEMKHPNGDPVTISLGFACTVPSRVAAPTDLIRAADQALYQAKQEGRNR 318 >gi|292490564|ref|YP_003526003.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291579159|gb|ADE13616.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 304 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 11/197 (5%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124 V+++ T++L +++ S S + L+ D L+G+ N I+ GS Sbjct: 99 VMVNCTLTLFAVWLTASFCYLHLHSVLTLQHLAHRDQLTGVYNRHYLIAK-GSEQIKMWQ 157 Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 Y S++ DIDYFK+IND +GH GD+V+ ++ L + R GGEEF Sbjct: 158 RYQMPFSLIILDIDYFKKINDQYGHGAGDQVLKHIAKLLQSQTRNVDTICRYGGEEFVIL 217 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQ 242 A +A+ +++ + S + + + T+S G+AE K + +I AD Sbjct: 218 LPMVDLDGALAMAHRIQRALSKSSLPWETM-TFRPTVSMGVAELVDKRWDLDKLIAEADM 276 Query: 243 ALYVAKKSGRNRVVCFS 259 ALY AK GRN+++ S Sbjct: 277 ALYQAKSLGRNQIIPMS 293 >gi|269962166|ref|ZP_06176519.1| GGDEF family protein [Vibrio harveyi 1DA3] gi|269832997|gb|EEZ87103.1| GGDEF family protein [Vibrio harveyi 1DA3] Length = 374 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 9/188 (4%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128 + ++L+L K+L + ++ LS D L+ L N + I +L + + Sbjct: 178 LKLNLVLEEKVDERTKQLSNANKQLEALSLTDSLTQLPNRRSAIKTLKKLWKDEDARDLP 237 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L + D DYFKQ+ND GH GD V+ L+ L F + V RLGG+EF + Sbjct: 238 LVCIMIDADYFKQVNDTCGHEAGDLVLTELAQALKHYFRSDDIVCRLGGDEFFVICPDTG 297 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247 + +A +RK + + + S P +IS G+AER E + +I AD+ +Y+A Sbjct: 298 LEGGLHVAEAVRKQVSHMLVPTSVEP-WRGSISVGVAERRDNMETYTDLIRVADEGVYLA 356 Query: 248 KKSGRNRV 255 K++G+NRV Sbjct: 357 KQNGKNRV 364 >gi|220933899|ref|YP_002512798.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] gi|219995209|gb|ACL71811.1| diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] Length = 370 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 20/179 (11%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147 ++ R+ +L D L+GL N F L ++ L+ +F DID FK IND G Sbjct: 181 LNLRRLRELGLTDPLTGLRNRRYFDEQLPMECQRARREQGPLACLFVDIDRFKSINDVHG 240 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIEN 205 HP GD+ I ++ ++ + R GGEEF L S AA +A +R+ + Sbjct: 241 HPAGDQAIREVAQRISAHVRPFDLLARYGGEEF--VILLSRLDAAATREVAERVRQAVAQ 298 Query: 206 SQINISSGPSIHITISAGIAERCHK-----EPIST---IIYRADQALYVAKKSGRNRVV 256 ++++ GP + +++S G A C + EP T ++ AD AL AK+SGRNRVV Sbjct: 299 RPVSLADGPELELSVSLGGAV-CARWDSRDEPEQTGRRLMEAADLALLEAKQSGRNRVV 356 >gi|121593122|ref|YP_985018.1| diguanylate cyclase [Acidovorax sp. JS42] gi|120605202|gb|ABM40942.1| diguanylate cyclase [Acidovorax sp. JS42] Length = 388 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Query: 107 DCLSGLLNHSAFIS--SLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N A + L + L D+D+FK++ND+ GH +GD V+ + Sbjct: 211 DELTGLYNRRAMVELIQLECRRRRRGQGTLLFAMIDVDHFKRVNDHHGHAMGDHVLRVFA 270 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D L + R GG+EF + A L R+ I + ++ P + ++ Sbjct: 271 DALRANVRETDVLARWGGDEFLLLLSDIEPRSAQTLLERTREAIAALPVP-NAPPDLRLS 329 Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +SAG+A H P T+ RADQALY AK GRNRV +++ Sbjct: 330 MSAGLALHMPHSSPQETL-ERADQALYAAKDQGRNRVALAPELQ 372 >gi|117927375|ref|YP_871926.1| diguanylate cyclase with GAF sensor [Acidothermus cellulolyticus 11B] gi|117647838|gb|ABK51940.1| diguanylate cyclase with GAF sensor [Acidothermus cellulolyticus 11B] Length = 710 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 88/183 (48%), Gaps = 13/183 (7%) Query: 82 LGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIV 132 LG +G S+ E + + +LS D L+GL N+ +LG + L+++ Sbjct: 485 LGTFAGQASVAIENVLLHQEAERLSLTDALTGLWNYRYLTMTLGHEIERATRFRRPLALL 544 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D FK IND GH GD V+ L+ +L V R GGEEF + A Sbjct: 545 MIDLDRFKDINDRHGHQAGDAVLVELARRLHTTVREVDTVARYGGEEFVVILPETDADGA 604 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKS 250 A A LR+ + + ++ I +T S GIA R H + ++ AD+ALYVAK S Sbjct: 605 AHTAERLRQAVRGTPFHVEQM-DIPVTASIGIAVFPR-HGSSAAILLRAADEALYVAKHS 662 Query: 251 GRN 253 GR+ Sbjct: 663 GRD 665 >gi|153825282|ref|ZP_01977949.1| ggdef family protein [Vibrio cholerae MZO-2] gi|183179374|ref|ZP_02957585.1| ggdef family protein [Vibrio cholerae MZO-3] gi|229515748|ref|ZP_04405207.1| GGDEF family protein [Vibrio cholerae TMA 21] gi|262192376|ref|ZP_06050529.1| GGDEF family protein [Vibrio cholerae CT 5369-93] gi|149741110|gb|EDM55169.1| ggdef family protein [Vibrio cholerae MZO-2] gi|183012785|gb|EDT88085.1| ggdef family protein [Vibrio cholerae MZO-3] gi|229347517|gb|EEO12477.1| GGDEF family protein [Vibrio cholerae TMA 21] gi|262031729|gb|EEY50314.1| GGDEF family protein [Vibrio cholerae CT 5369-93] Length = 527 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 493 YLSKSKGRNRV 503 >gi|323958044|gb|EGB53754.1| GGDEF domain-containing protein [Escherichia coli H263] Length = 479 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI Sbjct: 309 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 364 Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212 +V + G + R+GGEEF + A LA +R+ +E N + I Sbjct: 365 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 424 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 425 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 465 >gi|312881571|ref|ZP_07741352.1| hypothetical protein VIBC2010_03170 [Vibrio caribbenthicus ATCC BAA-2122] gi|309370774|gb|EFP98245.1| hypothetical protein VIBC2010_03170 [Vibrio caribbenthicus ATCC BAA-2122] Length = 417 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 17/164 (10%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 Q++ D L+GL NH + E I D+D+FK+IND FGH GD + L+ Sbjct: 255 QMANQDSLTGLWNHRFLHNHACKTCEHYCIALIDVDHFKKINDTFGHDAGDAALVKLAQI 314 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---- 217 L F V R GGEEF + + A L EN + ++S P +H Sbjct: 315 LKASFPDDTVV-RFGGEEFCIQSYSPFDHFIAKL--------ENMREDVSKTPIVHFEKT 365 Query: 218 --ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +TIS G+ + + I +AD LY AK+SGRN++V + Sbjct: 366 IIMTISIGVT--GIQGSLDEKIKKADDRLYTAKRSGRNQLVAYD 407 >gi|223984933|ref|ZP_03635036.1| hypothetical protein HOLDEFILI_02338 [Holdemania filiformis DSM 12042] gi|223963102|gb|EEF67511.1| hypothetical protein HOLDEFILI_02338 [Holdemania filiformis DSM 12042] Length = 838 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 5/127 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DID+FK++ND +GH GD+V+ ++ L VF + VGR GG+EF S Sbjct: 701 ALILLDIDHFKEVNDTYGHWAGDQVLGQVAQLLQEVFSGEI-VGRPGGDEFLVYIRQSEP 759 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 + DLR+ I+ +++ + ++ISAG A T+ +AD+ALY AK+ Sbjct: 760 ENVRQRCEDLRRRIQEIRLSATE----RLSISAGCAGASADSTFETLYQQADKALYQAKE 815 Query: 250 SGRNRVV 256 GRN++V Sbjct: 816 KGRNQIV 822 >gi|222640395|gb|EEE68527.1| hypothetical protein OsJ_26969 [Oryza sativa Japonica Group] Length = 1502 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 79/135 (58%), Gaps = 8/135 (5%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 ++ + ++D+FK +ND+FGH GD+++ ++ LV +VGRLG +EFA + + Sbjct: 372 ALCYINLDHFKLVNDSFGHAAGDQMLRSFAEYLVAAVRDGDWVGRLGADEFAVFLAHAGQ 431 Query: 190 QEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALY 245 EA + L+++I N + +S G S ++ S G+ E P ++ ++ AD A Y Sbjct: 432 DEAKRV---LQRVIRNLGQATFLVSEG-SPQLSCSIGVVEVSADAPDVNWLMSAADSACY 487 Query: 246 VAKKSGRNRVVCFSD 260 AK++GRNRV CF++ Sbjct: 488 AAKQAGRNRVHCFNE 502 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 10/100 (10%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 LEY VE L L + + ++ Y L L + + QL+ D L+GL N A + Sbjct: 1122 LEY-RVEALQLAVTWLL--MMAAYALNQRLGRLRQQRDELRQLAETDGLTGLPNRRAGLQ 1178 Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153 L + E+ L I F DID FK IND GH VGD+ Sbjct: 1179 QLARHLERVDRERGPLVIGFLDIDLFKDINDRHGHAVGDQ 1218 >gi|109898977|ref|YP_662232.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica T6c] gi|109701258|gb|ABG41178.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica T6c] Length = 681 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 92/176 (52%), Gaps = 16/176 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVG 151 N + ++S D L+GLLN IS + + +S+ +FD+D FK+IND +GHP+G Sbjct: 244 NNLKKISSTDPLTGLLNRRGMISKVRKEFKHIVEHHTISLFYFDVDDFKKINDTYGHPIG 303 Query: 152 DKVIAFLSDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAAILANDL-RKIIEN 205 D+++ + ++ ++ F G RL G+EF +++A ++ + +++I+ Sbjct: 304 DELLVAICQKVKLIISEMNFEGRYSFARLAGDEFVLTITDCDKEKAIQVSRRIGQQLIDP 363 Query: 206 SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 + SG + + IS G+A K+ ++ +AD A+ AK+ G+ R F D Sbjct: 364 IPV---SGCEVKVGISLGLAYSSDKKASFKALLSQADSAMRCAKEQGKGRFKVFDD 416 >gi|238761891|ref|ZP_04622865.1| Predicted diguanylate cyclase [Yersinia kristensenii ATCC 33638] gi|238700005|gb|EEP92748.1| Predicted diguanylate cyclase [Yersinia kristensenii ATCC 33638] Length = 366 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 7/181 (3%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141 + ++ L+ + S LS ID L+ L N + L + + ++ DID+FK Sbjct: 178 TRKLVAHLYNEREKFSDLSMIDPLTSLYNRRGLENKLETLLAQSPGNHYVLLLDIDHFKA 237 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 NDN+GH +GD+ + ++ + + V R GGEEF SE+ A LA +R+ Sbjct: 238 YNDNYGHTMGDQALVRVAAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYATQLAERVRQ 297 Query: 202 IIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + I + S +T+SAGI+ +++ + AD+ALY AKK GRN+V Sbjct: 298 RVLGLDIPHVFNHKVSTTVTLSAGISP-LQSYDLASSLKAADEALYRAKKDGRNKVAFAK 356 Query: 260 D 260 D Sbjct: 357 D 357 >gi|256830904|ref|YP_003159632.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gi|256580080|gb|ACU91216.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] Length = 542 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 14/184 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 ++L + +++ LS D L+G+ N F SL + +SI+ D+D+FK N Sbjct: 351 EDLKRANEQLTLLSMRDGLTGIPNRRMFDDSLKQEWRRAMRDKTPVSIILGDVDFFKDYN 410 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D GH GD+ + ++ L P V R GGEEFA + A +A LR+ Sbjct: 411 DAHGHLQGDQCLIAVAAVLQQQMNRPADLVARFGGEEFAIILADTGTDGAEHVAQSLRQA 470 Query: 203 IENSQINIS-SGPSIHITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNRVV 256 I + + S + +T+S G+A + E ++ +++RAD+A+Y +K+ GRNRV+ Sbjct: 471 ILDLHLEHGHSDAAPCLTMSFGVASMVPQPEDGDEGMAELLHRADRAMYQSKRLGRNRVI 530 Query: 257 CFSD 260 +SD Sbjct: 531 VWSD 534 >gi|226311854|ref|YP_002771748.1| signaling protein [Brevibacillus brevis NBRC 100599] gi|226094802|dbj|BAH43244.1| probable signaling protein [Brevibacillus brevis NBRC 100599] Length = 815 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 16/172 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I ++ D L+ L N + F L +EK+ ++F D+D FK IND GH +GD Sbjct: 381 IRYMAHYDSLTNLPNRTLFHEKLAEAMLKAKQKDEKIGVMFIDLDRFKNINDTLGHSIGD 440 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN----DLRKIIENSQI 208 ++ ++++L+ V RLGG+EFA G + +EA +A + + I I Sbjct: 441 VLLQAVANRLICCLRKEDSVSRLGGDEFAIFLTGVTHREAGEIAQRIITSMSESITLDHI 500 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I PSI I++ + I ++ AD A+Y+AK+ G+N FS+ Sbjct: 501 EIFITPSIGISMYPDDG-----DDIEALLKHADAAMYLAKEQGKNNYQFFSE 547 >gi|120556594|ref|YP_960945.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120326443|gb|ABM20758.1| periplasmic/7TM domain sensor diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 935 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 19/201 (9%) Query: 71 LVIISITISLLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----- 122 ++I + I+ LL Y + G + +EL + +S+LS D L+ L N S F Sbjct: 729 ILIAGLVITALLVYWNRKLGRLNRELADANEALSRLSVTDNLTQLGNRSYFDREFPHSFQ 788 Query: 123 --GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEE 179 + ++ D D+FK+IND +GH GD+ + L+D + F + R GGEE Sbjct: 789 WCQRHKTGFAVAMVDADHFKKINDTWGHEAGDQCLQALADVMREHFRRETDRLSRFGGEE 848 Query: 180 FAAAALGSSEQEAAILANDL---RKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236 F + +S ++A+ + L R + N Q + G +I +T+S G+A K S Sbjct: 849 F---IIFTSYEDASDIMERLERFRAAVANRQCDTCQGSAIELTVSIGLAYGVPKPTGSPA 905 Query: 237 IY--RADQALYVAKKSGRNRV 255 Y ADQALY AK +GRNR+ Sbjct: 906 EYLRLADQALYAAKGNGRNRL 926 >gi|124265854|ref|YP_001019858.1| signal transduction protein [Methylibium petroleiphilum PM1] gi|124258629|gb|ABM93623.1| signal transduction protein [Methylibium petroleiphilum PM1] Length = 1006 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 9/170 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++S L+ D L+GL N F S + + +++F D+D+FK +ND+ GH VG Sbjct: 568 KMSYLAHHDGLTGLPNRVLFQDRVHQACQSGRRHGRRFAVIFMDLDHFKHVNDSLGHAVG 627 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI 210 D+++ ++ +L + RLGG+EF + E +A +KI+ +Q + Sbjct: 628 DELLKAVAQRLTGALRASDTICRLGGDEFVVLLSDLDDVEVDGVAEVAKKILRQVAQPCV 687 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G +++ S GIA E T++ RAD A+Y +K+ GRNR FS Sbjct: 688 LGGTEVNVGASLGIALFPGDGEDPDTLMKRADAAMYRSKREGRNRYHFFS 737 >gi|310780255|ref|YP_003968587.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] gi|309749578|gb|ADO84239.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] Length = 313 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 11/173 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK-----LSIVFFDIDYFKQIN 143 +L ++ +I++L D L+ L N F + L S ++ + I+F DID+FK IN Sbjct: 141 QLKLANEKITKLLNTDFLTDLYNRKHFFERLEELVSLKKRKDCLNIGIIFADIDFFKTIN 200 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD V+ S L + R+GGEEF ++ ++ LRK Sbjct: 201 DTYGHDTGDLVLIKFSQMLKESLRKEDIIARIGGEEFCIIVQCGTDNCLTNISEKLRK-- 258 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 N + I I +T S G E I + I RAD+ +Y AK +GRN+V+ Sbjct: 259 -NCESMIFDNIDIKLTASFGATFYRVGEEIDSTIKRADENMYKAKDTGRNKVI 310 >gi|260770821|ref|ZP_05879750.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972] gi|260614058|gb|EEX39248.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972] Length = 636 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 21/169 (12%) Query: 97 YNRISQL---SRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQIND 144 YN I +L S D + L N F +L Y + DID FK IND Sbjct: 459 YNAIVELKERSERDPATSLWNKKKFEHTLQYYARLKQRYPNQPPTCLAIIDIDSFKAIND 518 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH VGD+VI +++ QL + F+ R+GG+EFA + +A K+++ Sbjct: 519 SLGHTVGDEVILYVAIQLQSLLRDTDFIARIGGDEFAVIIQHTDIHQAV-------KLMQ 571 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ISS P +T+S G+AE + P + AD+A+Y +K+ G+N Sbjct: 572 RVCTAISSWPQHKVTVSVGVAEVTAEAPQTCT--NADKAMYRSKRKGKN 618 >gi|107026294|ref|YP_623805.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] gi|105895668|gb|ABF78832.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] Length = 495 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 12/168 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVG 151 I L+R D L+GL N + L + ++++ D+D FK IND FGH G Sbjct: 317 IRHLARHDALTGLPNRHELHAELKRMLARRPRLPSPAFAVMYLDLDGFKSINDRFGHQAG 376 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++++L R+GG+EF A ++ Q +ILA + + I ++ +S Sbjct: 377 DEVLTQVAERLGKTLPPGELAARIGGDEFIVAIDDTTMQACSILAARIIRQI-SAPYALS 435 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G ++ I IS GIA + H P +I +AD ALY AK +G+ + CF Sbjct: 436 IGETVCIGISIGIALDDGHGSP-DELIRQADSALYDAKSAGKG-IYCF 481 >gi|94970869|ref|YP_592917.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345] gi|94552919|gb|ABF42843.1| diguanylate cyclase [Candidatus Koribacter versatilis Ellin345] Length = 472 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 12/177 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 ++L E + R++ L +D L+ L N F S + +S++ D+D FK Sbjct: 285 AVLGERDRLHERLTGLVYVDWLTDLPNRRHFDMRFNSEWRRAMRSRMPISLMMIDVDQFK 344 Query: 141 QINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 + ND +GH GD+ +A L + V + FV R GGEEF ++ A I+A ++ Sbjct: 345 EYNDAYGHMAGDRCLAKLGSVMAASVKRSADFVARYGGEEFVVILPETTATGAGIVAANV 404 Query: 200 RKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253 + + ++ + P +++S GIA EP S ++ AD+ALY AK+ GRN Sbjct: 405 MEAVAALELPHAGSPHKQVSVSVGIAYAHPDIGAEP-SELVRSADRALYTAKRDGRN 460 >gi|46908145|ref|YP_014534.1| GGDEF domain-containing protein [Listeria monocytogenes serotype 4b str. F2365] gi|46881415|gb|AAT04711.1| GGDEF domain protein [Listeria monocytogenes serotype 4b str. F2365] Length = 375 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 14/169 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++ + D L+ L N F G + LS+ DID+FK+IND GH G+ Sbjct: 204 LTETAMTDSLTNLPNMRFFTQQFGWIFAKSQKRKKSLSLFIIDIDHFKEINDFHGHQAGN 263 Query: 153 KVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI--N 209 V+A S L F R+GGEEFA ++AA++A R+ +E ++ N Sbjct: 264 TVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAALIAYFFREEVERAKFPYN 323 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVC 257 +SG +T+S G+A + ++ ADQALY AK++GRN++ Sbjct: 324 PASG---KVTVSIGVASASSNFSTTESLFEAADQALYQAKQNGRNQIAV 369 >gi|147674636|ref|YP_001216937.1| GGDEF family protein [Vibrio cholerae O395] gi|262169320|ref|ZP_06037012.1| GGDEF family protein [Vibrio cholerae RC27] gi|146316519|gb|ABQ21058.1| ggdef family protein [Vibrio cholerae O395] gi|262022133|gb|EEY40842.1| GGDEF family protein [Vibrio cholerae RC27] Length = 527 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 493 YLSKSKGRNRV 503 >gi|330974466|gb|EGH74532.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 530 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 15/172 (8%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSPLSLILIDADHFKRYNDHYGHLAGDECLIALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A + + I + QI + P + Sbjct: 396 RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILRAIRDEQIEHPASPFGIV 455 Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 TIS G+A +R + +I AD+ALY AK GRNRV S+I +T Sbjct: 456 TISLGVATFVGTDRQLDQ--RGLIELADRALYAAKSQGRNRVNVASEIATST 505 >gi|315126736|ref|YP_004068739.1| hypothetical protein PSM_A1661 [Pseudoalteromonas sp. SM9913] gi|315015250|gb|ADT68588.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 424 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S ++ +D L+ + N F L + N +LS++ DID FK+ ND +GH GD Sbjct: 253 LSDMAFLDSLTKIANRRRFDEKLHAEFKKLIKVNTQLSMIIIDIDNFKKFNDRYGHIAGD 312 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 K + ++ +L P FV R GGEEF + Q A +A ++K IE+ I Sbjct: 313 KCLHSVAQKLAETVSRPEDFVARYGGEEFVVLLPQTDNQGALFIAEQIQKSIEDLAIAHE 372 Query: 212 SGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRN 253 + +++S G+ H E + + + D ALY AK+ GRN Sbjct: 373 DSFTGFLSVSMGVHTVKHGEKTNHVDFFKATDSALYYAKRQGRN 416 >gi|289207702|ref|YP_003459768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] gi|288943333|gb|ADC71032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] Length = 1072 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 10/171 (5%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N F I + L++++FD+D FK IND FGH GD V+ Sbjct: 649 LAEHDPLTGLYNRHRFQRQLEQAIHTARRRGTHLALIYFDLDEFKTINDTFGHRAGDTVL 708 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + ++ + RLGG+EFA ++E+E LA + + I G + Sbjct: 709 VRAAGEIASLVREEEIFARLGGDEFAILVDHAAEREPEGLAERVARAISAIPFRF-RGQN 767 Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 +T S GIA H + + ++ AD A+Y AK SG+N F D NT Sbjct: 768 YRLTASIGIARYPEHGDNVEDLVAHADAAMYQAKDSGKNTWAVF-DASRNT 817 >gi|153212712|ref|ZP_01948369.1| ggdef family protein [Vibrio cholerae 1587] gi|124116362|gb|EAY35182.1| ggdef family protein [Vibrio cholerae 1587] Length = 527 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSEHLCKMLDE 374 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 493 YLSKSKGRNRV 503 >gi|332532219|ref|ZP_08408100.1| GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038317|gb|EGI74762.1| GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505] Length = 298 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 11/164 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y+R+ +L+ D L+GL N S F + + Y S++ D+D FKQ+NDNFGH Sbjct: 134 YSRVLKLATKDALTGLNNRSQFNDFLLQKLENCRRYQRPFSLMLLDLDNFKQVNDNFGHK 193 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD + S L V R GG+EFA ++A + ++ S + Sbjct: 194 IGDDTLKEFSKVLCSSIRGTDSVFRFGGDEFALLIEDPEFTTNKVIAERIMCLVRKSPLM 253 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + I + ++ C E I RAD+ LY AK SGRN Sbjct: 254 SKYKVTTSIGFTLANSQDCETE----IFARADKGLYKAKASGRN 293 >gi|209695294|ref|YP_002263223.1| membrane associated receptor [Aliivibrio salmonicida LFI1238] gi|208009246|emb|CAQ79509.1| membrane associated receptor [Aliivibrio salmonicida LFI1238] Length = 482 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 9/155 (5%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GLLN + + + ++ +++ FDID FK IND +GHP GD+V+ ++ + Sbjct: 329 DDLTGLLNRRSMTKVVNRFIEEDKPFALICFDIDNFKDINDTYGHPEGDEVLLHITYLVS 388 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS--IHITIS 221 + G + RLGG+EFA Q+ + +A + ++IE S I P I TIS Sbjct: 389 DLLGEATPIIRLGGDEFAVLLEIGDLQQLSHVAKKIHQVIEESPTII---PDLIIEQTIS 445 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G A E ++ ADQALY +K GRN+V Sbjct: 446 LG-AVLWRGERKEVLLKLADQALYDSKDRGRNQVT 479 >gi|91792747|ref|YP_562398.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91714749|gb|ABE54675.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella denitrificans OS217] Length = 888 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 9/170 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +LS D L+ L N + F+S + + +L++VF D+D+FK IND+ GH G Sbjct: 452 KLDKLSLHDPLTQLPNRAQFMSRIDNAIYYAKQEGTQLAVVFIDVDFFKHINDSLGHVAG 511 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ L+++L + + RLGG+EF+ +S + N + + E + + S Sbjct: 512 DTILVELANRLSSILHPGAVLSRLGGDEFSLLTNMASTDNLIAIVNRIFSVFE-APFSCS 570 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +G SI +T S G+A + ++ AD A++ AK+ GRN +++ Sbjct: 571 NGQSIRLTASMGLALYPSDGKDNDGLLRNADAAMHRAKQDGRNNYAFYTE 620 >gi|78044643|ref|YP_360678.1| GGDEF domain-containing protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996758|gb|ABB15657.1| GGDEF domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 217 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 7/167 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKV 154 + +S + D L+GL N + F L + K +S++ D+D FK IND +GH GD V Sbjct: 53 FKEVSVQANTDALTGLFNRNYFNEKLYNIKTKGPISLILLDLDNFKNINDLYGHLAGDTV 112 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ L V + R GG+EFA ++EQEA +A ++ IEN + Sbjct: 113 LQKVAEILKNVTRKVDIIVRWGGDEFAVVLWETTEQEALNIAQRIKTQIENYDF-VFGQS 171 Query: 215 SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + I++S GIA + + AD+ALY+AK G+ +++ S Sbjct: 172 RVRISVSIGIASMQESDLNDKDQLFKTADEALYLAK--GKKKLITVS 216 >gi|330951990|gb|EGH52250.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7] Length = 530 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 15/172 (8%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLIALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A ++ + I + QI + P + Sbjct: 396 RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAENILQAIRDEQIEHPASPFGIV 455 Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 TIS G+A +R + +I AD+ALY AK GRNRV S+I T Sbjct: 456 TISLGVATFVGTDRQLDQ--RGLIELADRALYAAKSQGRNRVNVASEIATGT 505 >gi|302342105|ref|YP_003806634.1| diguanylate cyclase with PAS/PAC sensor [Desulfarculus baarsii DSM 2075] gi|301638718|gb|ADK84040.1| diguanylate cyclase with PAS/PAC sensor [Desulfarculus baarsii DSM 2075] Length = 344 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 90/185 (48%), Gaps = 24/185 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 + + +LS D L+GL N F S L Y LS++ D+D FK NDNFGH V Sbjct: 164 DELRRLSITDSLTGLYNRRQFHSVLHDETARACRYGRPLSLICLDLDNFKPFNDNFGHQV 223 Query: 151 GDKVIAFLSDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GD ++ QLV + G R+GG+EF + ++E A I A+ R+ N Sbjct: 224 GDSIL-----QLVATCARGVLRGQDTAFRVGGDEFCLLMVETNEDNATIAADRFRRAF-N 277 Query: 206 SQINISSGPSIH-----ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 Q I+ +H + +S G+A+ E +++ RAD A+Y AK++G NR V Sbjct: 278 DQWPIAMS-FLHKGMEPVYMSLGVAQLQPGEKPDSLLMRADLAMYEAKRAGGNRSVTAGA 336 Query: 261 IENNT 265 N T Sbjct: 337 CINRT 341 >gi|254848498|ref|ZP_05237848.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|254844203|gb|EET22617.1| GGDEF domain-containing protein [Vibrio cholerae MO10] Length = 537 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 325 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 384 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 385 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 444 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 445 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 502 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 503 YLSKSKGRNRV 513 >gi|332187591|ref|ZP_08389327.1| diguanylate cyclase domain protein [Sphingomonas sp. S17] gi|332012339|gb|EGI54408.1| diguanylate cyclase domain protein [Sphingomonas sp. S17] Length = 667 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 12/163 (7%) Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++++R D L+G+ N +AF + + +KL++++ D+D FK++ND+FGH G+ Sbjct: 228 ARMARRDDLTGVANRTAFREHFEERLRLRAASEKKLALLWLDLDRFKEVNDSFGHLAGNA 287 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-S 212 ++ ++ +L V G V RLGG+EFA + Q A + I+++ + ++ + Sbjct: 288 LLVSVARRLEAVLGDHGIVARLGGDEFAVICCIADAQAAGRIGT---AILDSVRQSVRFN 344 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254 G + T S GIA + T++ AD ALY AK+ GR R Sbjct: 345 GHELRTTASIGIAIAPDNGSDADTLLKNADLALYRAKEKGRGR 387 >gi|288549379|ref|ZP_05966896.2| hypothetical protein ENTCAN_05250 [Enterobacter cancerogenus ATCC 35316] gi|288318873|gb|EFC57811.1| HmsT protein [Enterobacter cancerogenus ATCC 35316] Length = 305 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 20/256 (7%) Query: 25 HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN---------LSLVIIS 75 H+ + ++ +FI ++ F +NI F + P + + L ++ +L +++ Sbjct: 48 HSTYLIMALLTVLFIGSLAFASNIKAFTLHSLPAFIVCLWLSDHDSWIRMMFFFALPVVA 107 Query: 76 ITISLLL----GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NE 127 I I +L + ++L L ++ LS +D L+GL N S L + N Sbjct: 108 IGIHHVLQRRNDKFAQALLSRLLEERETLTDLSMMDPLTGLYNRRGLQSRLDNLPTPDNG 167 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 + ++ DID+FK ND++GH +GDK + +S + + V R GGEEF Sbjct: 168 EHFVLLLDIDHFKAYNDHYGHMMGDKALMRVSAAIRDAVRSRDIVARFGGEEFMVLLSNI 227 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALY 245 S + A A +R+ + + +I S+ ++TIS GI+ E + +AD+ALY Sbjct: 228 SLEHARQTAEHIRQKVYDLKIPHMFNESVATNVTISIGISI-YQNEDAERALEKADKALY 286 Query: 246 VAKKSGRNRVVCFSDI 261 AK GRN ++ ++ Sbjct: 287 EAKHMGRNNILLSDEL 302 >gi|300313424|ref|YP_003777516.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gi|300076209|gb|ADJ65608.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 E I+ R+ + D L+G+ N ++ LS +F DID+FK++ND Sbjct: 188 ENVINNERLKHIGLTDPLTGVNNRRYIEQRMQEEVARSQRDRSALSCLFIDIDHFKRVND 247 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH GD V+ ++ ++ +GR GGEEF ++ ++AA +A +R + Sbjct: 248 QFGHQSGDDVLREVAARIKKELRLSDALGRFGGEEFVVLLTHATREDAARIAERIRAGVC 307 Query: 205 NSQINIS-SGPSIHITISAGIA-------ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + I S + IT S G A R E ++ ADQALY AK++GRNRV+ Sbjct: 308 SRGVMIEGSRDPLKITASIGAAALTPPDRSRPAAEVKQAMLKAADQALYQAKEAGRNRVM 367 >gi|289207221|ref|YP_003459287.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] gi|288942852|gb|ADC70551.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] Length = 433 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +AF L E L ++ +DID FK IND +GH GDKV+ +++ Sbjct: 271 DSLTGLPNRTAFERYLDGLREDLGAEQPACLLVWDIDRFKAINDEYGHSAGDKVLKAVAE 330 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHIT 219 L + FV R GGEEF L S A+ +R+ ++ ++ + +G + + +T Sbjct: 331 ILAEGVRSEDFVARYGGEEF-VMILTSDPDTCQRRADSIREAVD--RLIVRAGKTRLRVT 387 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ISAG+ + + I AD AL AKK GR+RV Sbjct: 388 ISAGMCPIAAGQSTAAIFDAADHALLQAKKLGRDRV 423 >gi|91210117|ref|YP_540103.1| hypothetical protein UTI89_C1088 [Escherichia coli UTI89] gi|237706988|ref|ZP_04537469.1| diguanylate cyclase [Escherichia sp. 3_2_53FAA] gi|91071691|gb|ABE06572.1| hypothetical protein YcdT [Escherichia coli UTI89] gi|226898198|gb|EEH84457.1| diguanylate cyclase [Escherichia sp. 3_2_53FAA] Length = 496 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI Sbjct: 326 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVI----KT 381 Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212 +V + G + R+GGEEF + A LA +R+ +E N + I Sbjct: 382 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 441 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 442 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 482 >gi|84687739|ref|ZP_01015611.1| two component diguanylate cyclase [Maritimibacter alkaliphilus HTCC2654] gi|84664240|gb|EAQ10732.1| two component diguanylate cyclase [Rhodobacterales bacterium HTCC2654] Length = 456 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 13/162 (8%) Query: 107 DCLSGLLNH---SAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +++ + G+ +++ D+D+FK +ND FGH GD V+ + Sbjct: 290 DPLTGLFNRRYADGYLARMQKEHGATRRSCAMLLLDLDHFKSVNDRFGHLAGDDVLVETA 349 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 +L V R+GGEEF ++ EA + A LR + ++ ++ G + I + Sbjct: 350 RRLKATLREIDLVARIGGEEFLVVLRDTTGDEARLTAERLRAAVADTPVDARDGQTPISV 409 Query: 219 TISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257 T+S G+A C IS + +AD+ALYV+K GRN V C Sbjct: 410 TLSIGMAL-CSNS-ISNPRELWDQADRALYVSKAGGRNIVTC 449 >gi|126175898|ref|YP_001052047.1| diguanylate cyclase [Shewanella baltica OS155] gi|125999103|gb|ABN63178.1| diguanylate cyclase [Shewanella baltica OS155] Length = 460 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 14/177 (7%) Query: 92 ELFISYNR----ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140 L+++ R + Q S D L+GL N S L + E L ++ D+D+FK Sbjct: 273 RLYVATQRANESLYQQSVKDTLTGLFNRRYLESQLAIHIDHAKRHKEPLCLLVLDVDHFK 332 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND GH GD + ++ QL P F+ R GGEEF + ++ +A L Sbjct: 333 AFNDQHGHLAGDDCLVAVAKQLEQSLYRPADFIARYGGEEFVVVLPHTDAKDGMQIAERL 392 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRV 255 R + +I G + +TIS G A H E + +++ AD ALY AK +GRN V Sbjct: 393 RLNVSAKKIEY-QGQLLSVTISIGCAVLRHSEETAQSLLIAADSALYQAKAAGRNCV 448 >gi|114562967|ref|YP_750480.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] gi|114334260|gb|ABI71642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] Length = 751 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 22/166 (13%) Query: 104 SRIDCLSGLLNH-------SAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDK 153 S D L+GL N A I S S N + S++ DID+FKQIND GH GD Sbjct: 315 SNYDQLTGLSNRKYLFESLQAMIDSEDSVNGCKQDFSLMLMDIDHFKQINDTLGHDNGDL 374 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----LANDLRKIIENSQI 208 V+ F++ +L+ + + R+ +EFA G E+ I L N+L+K+ Sbjct: 375 VLKFVAQRLLSAIPDNVLIARIAADEFALVLPGKMCSESLISLFDDLTNELKKLF----- 429 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 I G + +++S G+A H + + I+ A QA+Y AK GRN Sbjct: 430 -IVGGQDVMLSMSTGLARYPHDADNVEQILNCATQAMYNAKSRGRN 474 >gi|315178862|gb|ADT85776.1| hypothetical sensory box/GGDEF family protein [Vibrio furnissii NCTC 11218] Length = 636 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 21/169 (12%) Query: 97 YNRISQL---SRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQIND 144 YN I +L S D + L N F +L Y + DID FK IND Sbjct: 459 YNAIVELKERSERDPATSLWNKKKFEHTLQYYARLKQRYPNQPPTCLAIIDIDSFKAIND 518 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH VGD+VI +++ QL + F+ R+GG+EFA + +A K+++ Sbjct: 519 SLGHTVGDEVILYVAIQLQSLLRDTDFIARIGGDEFAVIIQHTDIHQAV-------KLMQ 571 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ISS P +T+S G+AE + P + AD+A+Y +K+ G+N Sbjct: 572 RVCTAISSWPQHKVTVSVGVAEVTAEAPQTCT--NADKAMYRSKRKGKN 618 >gi|300691153|ref|YP_003752148.1| diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum PSI07] gi|299078213|emb|CBJ50860.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum PSI07] Length = 534 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 20/191 (10%) Query: 84 YISGSILKELFISYNRI--SQLSRI------DCLSGLLNHSAFISSL-----GSYNEKLS 130 YI LK + R+ S+L+R+ D L+GL N ++L + S Sbjct: 328 YIEAHRLKRALLRGTRLTSSRLARLNHEALTDPLTGLYNRRGVANALRLHAGAGQPQPFS 387 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 V D+D+FK+IND GH VGD+V+ ++ + GR+GGEEF G++ Sbjct: 388 AVTLDVDHFKRINDRNGHDVGDQVLKHIAALIREQARHGDITGRIGGEEFIILLPGATPD 447 Query: 191 EAAILANDLRKIIENSQINISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAK 248 A A LR+ +E P+ +T+S G+A + ++ +D ALY AK Sbjct: 448 GAFKTAERLRRAVE-----ARPNPTGQVVTVSLGVAHYPLSSGEVDAVLKLSDLALYQAK 502 Query: 249 KSGRNRVVCFS 259 ++GRNR V + Sbjct: 503 RNGRNRTVLYQ 513 >gi|296102510|ref|YP_003612656.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056969|gb|ADF61707.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 364 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 7/168 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 +L IS R+ L+ D L+ N + + N+ S++ DIDYFK ND +GH Sbjct: 196 QLLIS--RLDALAHQDPLTKTANRRMMEVVLENAVEQNKAFSLIMLDIDYFKLYNDTYGH 253 Query: 149 PVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD + ++ L TP V R GGEEF E A +A ++ + + Sbjct: 254 QAGDDCLTRVAQVLKQAVRTPDDVVSRYGGEEFVVILFNCPENVAQQVARRIQDGLRAAA 313 Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I + +S S H+T+S GIA +I RAD ALY AK++GR+R Sbjct: 314 IPHGASKVSEHVTVSMGIAGIAPGLAGPELIARADAALYRAKEAGRDR 361 >gi|163749530|ref|ZP_02156778.1| GGDEF domain protein [Shewanella benthica KT99] gi|161330939|gb|EDQ01866.1| GGDEF domain protein [Shewanella benthica KT99] Length = 518 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 20/169 (11%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + + + L + DID+FK INDNFGH GDK Sbjct: 354 QKLNLLDTLTQLPNRAALEERMEQEYRNYQRHKQPLWVAVADIDHFKTINDNFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF + A D+ +++ + + S Sbjct: 414 ALQVIAMALKNSLRDTEFVARYGGEEFVFII-------PDVNATDIEQLLNRVREKVKSI 466 Query: 214 P------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P I +T+S G A+ + E I+ RAD ALY AK R+RV+ Sbjct: 467 PFKFKNQRITVTVSIGAAQIINNELINETFDRADAALYRAKHESRDRVI 515 >gi|163850760|ref|YP_001638803.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163662365|gb|ABY29732.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 811 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 11/172 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+ L+ D L+GL N + F G S ++ +++ D+D FK++ND GH GD Sbjct: 372 IAYLATRDPLTGLSNRAVFHDVAGEACTASMSGGPRVHLLYLDLDGFKKVNDTAGHCAGD 431 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ ++D+L V RLGG+EFA G EA ILA + I + + Sbjct: 432 DLLRQVADRLCASVDANAQVFRLGGDEFAILHRGRESAEAEILAEAV--IASLHRPYLIE 489 Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF-SDIE 262 G I +S GIA + ++ +AD ALY AK++GR R CF +D+E Sbjct: 490 GMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWHCFEADLE 541 >gi|37675941|ref|NP_936337.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|37200481|dbj|BAC96307.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 639 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 15/179 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQIND 144 S+ +EL R++ ++ D L+GL N S SL + +++ ++F D+D FK +ND Sbjct: 466 SVEREL----KRLNYVANHDPLTGLANRSHAFQSLQTEHDQGKDQYLLFLDLDGFKAVND 521 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH +GD ++ ++ +L V RL G+EF ++A + +I+E Sbjct: 522 QFGHAIGDDLLRVVAKRLKNSVFNRDLVARLAGDEFLIGI-----RDAHTYVPVVERILE 576 Query: 205 NSQINIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 Q IS G +T S G++ K+ +S I+ AD+A+YVAK+ G+N+ C D Sbjct: 577 QLQQPISIDGCLCDVTASIGVSHWAVKDGVSLEERIHHADEAMYVAKRLGKNQYCCLQD 635 >gi|332670800|ref|YP_004453808.1| diguanylate cyclase with PAS/PAC sensor [Cellulomonas fimi ATCC 484] gi|332339838|gb|AEE46421.1| diguanylate cyclase with PAS/PAC sensor [Cellulomonas fimi ATCC 484] Length = 522 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 11/167 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 Q SR D L+GL N + L + E+ LS+V D+D+FK +ND GH VGD+V Sbjct: 337 QASR-DGLTGLHNRRSLAQRLTTAVEQSAGTGAPLSMVLLDLDHFKTVNDTHGHAVGDRV 395 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L G RLGGEEF G +A A LR +++ + +G Sbjct: 396 LREVAALLAAATGPGEIAARLGGEEFVLLLPGVDVVDATRRAERLRT--RCARLAVPAGD 453 Query: 215 -SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ +T+SAG+A ++ AD A+Y AK +GR+RV D Sbjct: 454 VTLTLTLSAGVAAHAAGGTPDDLLRAADDAMYAAKAAGRDRVTAAPD 500 >gi|303246217|ref|ZP_07332497.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio fructosovorans JJ] gi|302492280|gb|EFL52152.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio fructosovorans JJ] Length = 300 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 89/177 (50%), Gaps = 15/177 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL + + + + + ID L+ + N F + L + LS++ DID+FK+ ND Sbjct: 122 ELKRARDLLEEQAFIDSLTAIPNRRRFDAVLDKEWRRAQRNGAPLSLILLDIDFFKKYND 181 Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 N+GH GD + + L V FV R GGEEFA G+ Q A ++ +R I Sbjct: 182 NYGHQQGDDCLRRVGWSLKESVRRAADFVARYGGEEFAVILPGTDTQGALDASDTIRLRI 241 Query: 204 ENSQI-NISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I + S + H+T+S G+A ER H II ADQALY AK+ GRN V Sbjct: 242 SSLAIPHEHSSVAPHVTVSLGVATSYPERNHGP--GEIIDAADQALYRAKEEGRNTV 296 >gi|316932923|ref|YP_004107905.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315600637|gb|ADU43172.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 357 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 17/177 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-----------SAFISSLGSYNEKLSIVFFDIDYF 139 ++L + + +LS D L+G+ N ++ + SLG S++ D+D+F Sbjct: 184 RDLRRANAALERLSATDALTGVFNRRYLDELIEQETASIVPSLGQ-----SVLMIDVDHF 238 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K ND+ GH GD+ + + + + V R GGEEFA G + E A L Sbjct: 239 KLFNDHGGHAAGDRCLQQIVTAVRRNLRSCDVVVRYGGEEFAVVLPGLDQAELQETAERL 298 Query: 200 RKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ +I + G + +TIS GIA E ++ I RADQ+LY AK+ GRNRV Sbjct: 299 CHAVKELKIAHPGLGEAEIVTISVGIAPAVPAETLADAIQRADQSLYRAKRGGRNRV 355 >gi|183179370|ref|ZP_02957581.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|183012781|gb|EDT88081.1| GGDEF family protein [Vibrio cholerae MZO-3] Length = 392 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 18/198 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----I 119 I+V+NL II T+ +L + +E I ++R+ + D L+G N F Sbjct: 201 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 250 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 L +K + DID+FKQIND++GH +GD VI ++ L + T V R GGEE Sbjct: 251 KKLKQSKQKSMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 310 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238 FA A + + + + +R I + ++ P + ++I A I E H+ ++ Sbjct: 311 FAIFASENDFERVSQALDSVRDAI-SVGFHVEQQPLKVSVSIGAVIFESSHE--YGEVLR 367 Query: 239 RADQALYVAKKSGRNRVV 256 +AD+ALY AK+ GRNR++ Sbjct: 368 QADKALYQAKQQGRNRIM 385 >gi|104782182|ref|YP_608680.1| diguanylate cyclase [Pseudomonas entomophila L48] gi|95111169|emb|CAK15889.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas entomophila L48] Length = 524 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 17/181 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 +I + L ++ + ++ D L+GL N I + L++V FD+D+FK Sbjct: 332 AIERALHQAHQTLKAMALTDSLTGLGNRRRLDAVLEPEIRRARRQGQSLALVMFDLDHFK 391 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199 ND +GHP GD + + L P + R GGEEF + Q AA++ ++ Sbjct: 392 PYNDRYGHPAGDACLRQFGELLRQALKRPGDLAVRYGGEEFTLLLPDTDTQGAALIVQEI 451 Query: 200 RKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRN 253 + ++ I P ++ SAGIA E E + T AD+ALY AK+ GR+ Sbjct: 452 LHALRHAAIEHLGSPLGQVSASAGIAVAAPSLENVTPENLMTA---ADEALYTAKRQGRD 508 Query: 254 R 254 R Sbjct: 509 R 509 >gi|148545650|ref|YP_001265752.1| diguanylate cyclase [Pseudomonas putida F1] gi|148509708|gb|ABQ76568.1| diguanylate cyclase [Pseudomonas putida F1] Length = 425 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 126/283 (44%), Gaps = 39/283 (13%) Query: 1 MTRSLKDFLSIWLCHEKNLESFSPHTF---MIYFSIFFSIFIATVI--FIANIFLFYIGL 55 + +S + L WL E + H + + +F +FI V+ A L L Sbjct: 141 LQQSYPEALLTWLA-EIRWPALHGHWMSLIQMVYPLFLGVFILLVVQYLRAPRPLHAAQL 199 Query: 56 TPFYGLEYILVENLSL-VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 G+ ++L + L ++I S ++ I+ ++ E + Q++ D L+GL Sbjct: 200 IGLLGIFWMLPQTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPG 252 Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 A + I D+D+FK+ ND GH VGD+V+ ++ +LV G Sbjct: 253 RRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASRLVTGGGRAYRY-- 310 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPS 215 GGEEFA G + E +R++I N +++ S+G + Sbjct: 311 -GGEEFALVFAGKTAAECVPHVEAVREVIANYVMHLRDQHNRPQDDTAGRQRRAGSAGGT 369 Query: 216 IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 + +TIS G+AER H+ P ++ ADQALY AK +GRN V+ Sbjct: 370 VSVTISIGVAERQADHRNP-EAVLKSADQALYSAKGAGRNCVM 411 >gi|330873610|gb|EGH07759.1| response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 551 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + A + +++R ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIHNAHKVLDEIRHRF--AEIHYPAQPADLFC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRN+V Sbjct: 497 TFSAGVVSLGADDDSLSLASQADIALYRAKHAGRNQV 533 >gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans] Length = 832 Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 18/179 (10%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDID 137 I+ + EL I Y + D L+ L N +++L + E L+++F D+D Sbjct: 387 ITKRKMTELQIEYQAMH-----DMLTDLPNRRYLVNTLATAMETSRQQQSSLTMLFCDLD 441 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK +ND GH GD+ + +S ++V V FV R GG EF SS E++I A Sbjct: 442 FFKSVNDTHGHDFGDQCLLEISKRIVAVLPESDFVARFGGNEFVILT-NSSLAESSIKAK 500 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNR 254 + + + S+ + ++ I +S GIA+ H+ P + +I AD A+Y AK+ GRNR Sbjct: 501 AIARAV--SERLVFENVAVKIQVSIGIAQLSPDHQVP-ADLIREADAAMYQAKERGRNR 556 >gi|332139907|ref|YP_004425645.1| sensory box protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327549929|gb|AEA96647.1| sensory box protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 720 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 5/165 (3%) Query: 99 RISQLSRIDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+ QL+ D L+GL N + I+ L + +VF D+D FK INDN GH GD + Sbjct: 292 RLRQLALHDELTGLSNRNFLRESITGLVESKKPFVLVFIDLDGFKAINDNAGHERGDIEL 351 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + QL +FG VGR GG+EF A + ++ A + L IE I++ S Sbjct: 352 QRVGAQLTAMFGPIGEVGRWGGDEFIAVLPSQTCEKIAEKSQQLIHHIEEDVISVKSS-E 410 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + ++ S GIA+ H + I +I AD A+Y AK+ G+ + + Sbjct: 411 LRLSASIGIADFPAHSDSIEGLIQCADAAMYRAKELGKGQAFIYE 455 >gi|90422286|ref|YP_530656.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gi|90104300|gb|ABD86337.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] Length = 501 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 21/175 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 R+ +LS D L+GL N F +++ + ++ ++++ D D+FK ND+FGH Sbjct: 326 QRLEELSVTDPLTGLTNRRKFDAAIETEWQRAQRQQTPVALLMIDADHFKGYNDSFGHQA 385 Query: 151 GDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD+++ ++ V + + G R GGEEFA G S A +A +R +E Sbjct: 386 GDQMLIGIA---VCIADSVHRAGDCAARFGGEEFAVLLPGLSAYAALSVAETIRGKVEQW 442 Query: 207 QINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I+ + +TIS G A P S ++ AD+ALY AK SGRNR V S Sbjct: 443 SIDQTG-----VTISVGTASITPGPATPWSVLVEAADKALYAAKASGRNRSVVAS 492 >gi|330963451|gb|EGH63711.1| response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 551 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + A + +++R ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIHNAHKVLDEIRHRF--AEIHYPAQPADLFC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRN+V Sbjct: 497 TFSAGVVSLGADDDSLSLASQADIALYRAKHAGRNQV 533 >gi|330447520|ref|ZP_08311168.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491711|dbj|GAA05665.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 435 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 93/195 (47%), Gaps = 33/195 (16%) Query: 72 VIISITISLLLGYISGSI--LKELFISYNRISQLSRIDCL-----SGLLNHSAFISSLGS 124 ++ S+ ++L++GYIS S+ + L+ N ++Q R D + +LNH A Sbjct: 262 LLFSLILTLVIGYISNSLNFVINLYQKDN-MTQCIRRDIIEPKLRKKMLNHQA------- 313 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 I+ DID FK INDN+GH GD+VI +++ L R GGEEF Sbjct: 314 ------ILMVDIDRFKSINDNYGHDYGDQVITTVAEILKDNIRKADKCIRWGGEEFMLIL 367 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRAD 241 Q A LR IE S + IT S G+A + C S ++ RAD Sbjct: 368 NIKDAQVVKNKAEQLRSAIEQ-----QSALDMKITASIGVAIAEQNC----FSQVLERAD 418 Query: 242 QALYVAKKSGRNRVV 256 ALY AK +GRN+VV Sbjct: 419 MALYHAKNNGRNQVV 433 >gi|323704500|ref|ZP_08116078.1| diguanylate cyclase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535962|gb|EGB25735.1| diguanylate cyclase [Thermoanaerobacterium xylanolyticum LX-11] Length = 297 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 15/217 (6%) Query: 50 LFYIGLTPFYGLE-YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108 L+ + TPFY I+VE L T + L+ I + ++ N +++L D Sbjct: 87 LYLVTSTPFYTDSGKIVVELLK----DSTDAGLIEDIKNLTSQNIYDKVNELNELVVKDG 142 Query: 109 LSGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+GL N L S N +SI+ DID+FK++ND +GH GD+ + F + Sbjct: 143 LTGLYNRRFVDERLPVDILRASLNTMPVSIIMADIDFFKKVNDTYGHIAGDETLKFFASI 202 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + + R GGEEF + + EA +A +RK IE+S I I I IT S Sbjct: 203 IQSNIRKDDWAARYGGEEFLICLKNTDKNEAYEIAERIRKSIESSTI-IYKDKEIKITSS 261 Query: 222 AGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G+ + E +I + DQ LY AKK RN+V+ Sbjct: 262 FGVYTFEGNYENYLDVIEKTDQKLYEAKKK-RNQVMA 297 >gi|323488359|ref|ZP_08093607.1| diguanylate cyclase [Planococcus donghaensis MPA1U2] gi|323398017|gb|EGA90815.1| diguanylate cyclase [Planococcus donghaensis MPA1U2] Length = 325 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 13/174 (7%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFK 140 G+ +EL + QL+ D L+G N L + +++++ DID+FK Sbjct: 152 GNKQQELLALNLELQQLAITDSLTGSKNRRYLEERLTHFLVQAEKGREVTVLILDIDHFK 211 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ++ND GH +GD V+ L+ +L V G+ V R GGEEF +E N + Sbjct: 212 RVNDTHGHHIGDAVLKELARRLEEVVGSTGIVTRFGGEEFVIIIPDVGAKEGLAKGNIIC 271 Query: 201 KIIENSQ-INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 K +E++ IN+ +T+S G+A + S+ + RAD LY AK GRN Sbjct: 272 KYMESANWINVP------VTVSIGVAVHLPGDDTSSWLSRADSYLYKAKADGRN 319 >gi|288918031|ref|ZP_06412389.1| diguanylate cyclase [Frankia sp. EUN1f] gi|288350549|gb|EFC84768.1| diguanylate cyclase [Frankia sp. EUN1f] Length = 424 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 11/197 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--E 127 S V++ I + L+L G EL +S R +R+ L G A + S+ Sbjct: 220 SPVLLVIAVPLVLLLRRGLAHAEL-LSAARTDAKTRLATL-GYWRQVATAETARSHGLGR 277 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 L ++ DID+FKQ+ND GH GD V+ ++D L VGR GGEEF +G Sbjct: 278 PLGVLLVDIDHFKQVNDRHGHIDGDVVLLAVADALRHATRPQDLVGRFGGEEFVVLLVGV 337 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKEP--ISTIIYRADQ 242 AA +A +R + +++++ G +T+S G+A H + ++ ++ RAD Sbjct: 338 DLAAAAAIAERIRDSVAAVRVHLTRGEQ-RVTVSVGVASGAPASHDDHGVVTDLLERADA 396 Query: 243 ALYVAKKSGRNRVVCFS 259 ALY AK+ GR+R VC + Sbjct: 397 ALYRAKREGRDR-VCLA 412 >gi|256821336|ref|YP_003145299.1| diguanylate cyclase [Kangiella koreensis DSM 16069] gi|256794875|gb|ACV25531.1| diguanylate cyclase [Kangiella koreensis DSM 16069] Length = 393 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPV 150 R+ + D L+G+ + F+ S EK F D+DYFK++ND +GH Sbjct: 227 ERLRTAAESDALTGVDSRGHFMQRAEALLQRSRFEKAPFCLFMIDVDYFKRVNDTWGHTC 286 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD++++ +++ +GR GGEEF ++ EA +A+ L+ + ++ Sbjct: 287 GDQILSKIAEVCQHSLRPNDIIGRFGGEEFVVGLPNTNTSEAKAVADRLKDNVAALTLD- 345 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++++ GIA + + +I RAD LYV K+ GRNRVV Sbjct: 346 GEMSELRLSVTIGIAVADTEDDDLDVLITRADNMLYVGKREGRNRVV 392 >gi|153833419|ref|ZP_01986086.1| diguanylate cyclase [Vibrio harveyi HY01] gi|148870307|gb|EDL69237.1| diguanylate cyclase [Vibrio harveyi HY01] Length = 373 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 85/181 (46%), Gaps = 17/181 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 KEL ++ +L+ D LSGL N F +S + N+ +S V D+DYFKQ+N Sbjct: 193 KELRCLNKKLQELAITDELSGLYNRRYFNIMTPDILSKAQAGNQTVSFVSIDLDYFKQLN 252 Query: 144 DNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 D GH GD KV A LS Q G R+GGEEF +GS A + Sbjct: 253 DELGHLKGDEAITKVGALLSSQFN---GVDEIAFRMGGEEFLIVLVGSEHHRCVRRAEKV 309 Query: 200 RKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVV 256 R+ I I H +T S G+ + + +S + + D+ LY AK +GRN+VV Sbjct: 310 RESIATLSIQCDRHEQRHFLTSSIGVYSQQSEANVSIRYFLDKVDKCLYKAKLTGRNKVV 369 Query: 257 C 257 Sbjct: 370 A 370 >gi|89093469|ref|ZP_01166417.1| two-component response regulator [Oceanospirillum sp. MED92] gi|89082159|gb|EAR61383.1| two-component response regulator [Oceanospirillum sp. MED92] Length = 419 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 11/167 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL I ++ + SR D L+ +LN +AF + YN +++F D+D FKQ+ND Sbjct: 252 ELIIRQQKLERASRQDALTKVLNRNAFNDHLRQALEHFNRYNTAATLIFIDLDDFKQVND 311 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH VGD + L+ L +GR GG+EF S E +A N ++ + Sbjct: 312 NYGHLVGDNCLIELARTLRSSVRKTDLLGRYGGDEFVVLLNNSIEHDAEEFIN---RVGD 368 Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250 + I I++ IS G+ + + E I I AD +Y +K S Sbjct: 369 RITLLIEEEQKINVGISYGVHQLTREIESIDQWIDHADHLMYQSKLS 415 >gi|127512206|ref|YP_001093403.1| diguanylate cyclase [Shewanella loihica PV-4] gi|126637501|gb|ABO23144.1| diguanylate cyclase [Shewanella loihica PV-4] Length = 593 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 17/178 (9%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSA--------FISSLGSYNEKLSIVFFDIDYFKQIND 144 +F+ + ++S+ D L+G+LN F+ L ++ S+V FD+D+FK IND Sbjct: 404 MFVQKRKYKRISQRDPLTGVLNRGTGQDFAENLFVDVL-AHRSMFSVVMFDLDHFKAIND 462 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD + + D + + R+GGEEFA + EQ A +A R IE Sbjct: 463 TYGHSAGDWALRRVVDAVTPSLKSRDLFVRMGGEEFALFLPYTDEQAALKIAKQCRVAIE 522 Query: 205 NSQINISSGP---SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCF 258 I + P + IT S G+ ++ + ++ R D A+Y AK +GRN VV + Sbjct: 523 ----AIQTRPHYSDLSITASFGVCTSVEEDLSLDPLMKRVDIAMYQAKGNGRNCVVMY 576 >gi|121728541|ref|ZP_01681564.1| chase domain protein [Vibrio cholerae V52] gi|121629205|gb|EAX61645.1| chase domain protein [Vibrio cholerae V52] Length = 527 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 493 YLSKSKGRNRV 503 >gi|330963771|gb|EGH64031.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 712 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q+N G I + S GIA C + ++ AD A+Y A Sbjct: 371 QAAKIAEKLIERVSGRRQVN---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426 Query: 248 KKSGRNR 254 K++GR + Sbjct: 427 KRAGRQQ 433 >gi|311106996|ref|YP_003979849.1| diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310761685|gb|ADP17134.1| diguanylate cyclase, GGDEF domain protein 14 [Achromobacter xylosoxidans A8] Length = 390 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 22/263 (8%) Query: 4 SLKDFLSIW-LCHEKNLESFSPHTFMIYFSIFFSIFIATVIFI---------ANIFLFYI 53 +L ++ W L ++L S +P + ++ A FI I L Sbjct: 128 ALVSGMTAWELLRCQSLRSLTPLRIATAAAGIHALVYAARAFILPWWVAEHGPGIHLTAS 187 Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 LT + G+ Y +V ++L + L+ G +L+E Y L+R+ Sbjct: 188 TLTMYEGVLYSIVLPMTL------LKLVREETHGQLLRESQTDY-----LTRLGNRRWFF 236 Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 A I G+ ++++ FD+D FK IND GH GD+V+ F ++ V G + + Sbjct: 237 EQGARIIEGGAGRGPVAVLAFDLDQFKAINDRHGHQAGDQVLKFFAESARCVLGPDVLLA 296 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP- 232 R+GGEEFAA G + A +L + + + G I T+S G+A+ K P Sbjct: 297 RIGGEEFAALLSGQDARRATVLGAAVAQHFAGTVSRRDDGAGIPATVSVGLAQFEDKVPA 356 Query: 233 ISTIIYRADQALYVAKKSGRNRV 255 ++ + AD+ALY AK G NRV Sbjct: 357 LADALAAADRALYQAKALGGNRV 379 >gi|291618993|ref|YP_003521735.1| PleD [Pantoea ananatis LMG 20103] gi|291154023|gb|ADD78607.1| PleD [Pantoea ananatis LMG 20103] Length = 535 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 6/152 (3%) Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+GL N F ++E+ S + DID+FK+IND +GH GD+V+ L+ L Sbjct: 375 DPLTGLNNRRGFYIQAAQHSEEPVQSAIAIDIDHFKKINDRYGHDAGDEVLVSLAGLLRK 434 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 T + R GG +AA +A +R+ + + S +T+S G+ Sbjct: 435 RCRTLDVISRFGGRSLFCCFPVRHLNDAAAMAERIREAVSKTSFPFISA----MTVSLGV 490 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 A E ++ RAD+ALY AK GRNRV+ Sbjct: 491 ATLSETEDKDALLRRADEALYAAKGDGRNRVM 522 >gi|218676322|ref|YP_002395141.1| hypothetical protein VS_II0547 [Vibrio splendidus LGP32] gi|218324590|emb|CAV26119.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 489 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 16/210 (7%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYN--RISQLSRIDCLSGLLNHSAF 118 LE L +N SL++ S+ ++L++ +S + L++ + +I ++ +D L+GL N F Sbjct: 278 LEQELNKNHSLLLASL-MTLVISLLSIIAVLVLYLRHRHLKILDVASLDYLTGLSNRRDF 336 Query: 119 ISSL-------GSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 IS + Y K + I+ DID+FK +ND GH GD+VI ++ L Sbjct: 337 ISQVKMRILECSPYPLKGVGIILLDIDHFKSVNDLHGHNEGDRVICAVAKVLKQFANENR 396 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 + R GGEEF +E + L+ +LR+ +E + G + +T+S G Sbjct: 397 LIARYGGEEFIFVTFDCNEYQLYELSEELRRSVEKIE-----GLVLPVTVSVGCRYANAL 451 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I I +AD+ALY AKK+GRN + + Sbjct: 452 FHIEGTIDQADKALYQAKKNGRNNTQVYRE 481 >gi|193782538|ref|NP_435318.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021] gi|307300730|ref|ZP_07580505.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti BL225C] gi|307319141|ref|ZP_07598571.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83] gi|193072994|gb|AAK64730.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021] gi|306895248|gb|EFN26004.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83] gi|306904264|gb|EFN34849.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti BL225C] Length = 733 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 10/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 S + L+R D L+GL N ++F + + + ++ ++++ D+D FKQ+ND GHP Sbjct: 296 SQAELDHLARHDPLTGLANRASFNRLLARVVATSTIDQANALLYLDLDRFKQVNDTLGHP 355 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+++ ++ +L + R+GG+EF + + E L + L I Sbjct: 356 VGDRLMVEVAKRLKET-AAGAAISRIGGDEFTIIVARTRQDEVEKLCDALIAAIRRP-FE 413 Query: 210 ISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I P I ++I +A +PI I +AD ALY AK +GRNR F Sbjct: 414 IDGQPILIGLSIGVAVATGNDADPIE-ITRKADIALYHAKSAGRNRYAVF 462 >gi|149180971|ref|ZP_01859472.1| hypothetical protein BSG1_11041 [Bacillus sp. SG-1] gi|148851255|gb|EDL65404.1| hypothetical protein BSG1_11041 [Bacillus sp. SG-1] Length = 593 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 10/167 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q S D L+G N + F L YN+ ++++F DID FK++ND+ GH GDKV Sbjct: 221 QKSVTDSLTGSYNSAYFKQKLAEVMKDARYYNQPMALLFCDIDNFKKLNDHEGHLYGDKV 280 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ + V R GGEEF + A +A +R ++ +N Sbjct: 281 LKQIAKVIHDHVREHDIVCRYGGEEFVIIMRDTDASTATAIAEKVRHMV---ALNGHRSI 337 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 IT+S G+A I++ ADQA+Y AK G+NRVV D+ Sbjct: 338 LTPITMSIGVAVFPQDADEENIVHIADQAMYTAKSLGKNRVVAAQDL 384 >gi|32477591|ref|NP_870585.1| GGDEF family protein [Rhodopirellula baltica SH 1] gi|32448145|emb|CAD77662.1| GGDEF family protein [Rhodopirellula baltica SH 1] Length = 346 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 14/168 (8%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQINDNFGHP 149 YN +++ D L+G LN + ++ S KL +++ DID+FK +ND GH Sbjct: 182 YNALTR----DALTGALNKRFLMEAIDRELSRSTRAKLELAVIMLDIDHFKSVNDTHGHL 237 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD V+ ++ + T + R GGEEF + +A +A R I + Sbjct: 238 VGDDVLRTFGKRIQALCRTDDLLARYGGEEFCLLLAATGHHDAMEIAERCRATIAGTPFQ 297 Query: 210 ISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255 S GP + IT S G++ +P + ++ ADQ LY AK +GRN+V Sbjct: 298 TSIGP-LEITASFGVSVMDPDQPSTVRALLQDADQHLYDAKNAGRNQV 344 >gi|117919199|ref|YP_868391.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117611531|gb|ABK46985.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 646 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 107/207 (51%), Gaps = 22/207 (10%) Query: 67 ENLSLVIISITISLLLGYISGSILK--ELF----ISYNR-ISQLSRIDCLSGLLNHSAFI 119 + L+L+ + ++ L++ ++G IL LF + NR + ++ D L+ L N Sbjct: 433 QELALLEKNKSLQLIILLLTGCILAIVSLFAYKQVHRNRHLQTIALTDYLTQLPNRRYIY 492 Query: 120 SSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 + Y ++ LS++ FD D+FK+INDNFGH +GD+ + ++ + + Sbjct: 493 AKAEQYFQQALKQQTPLSVIIFDADHFKKINDNFGHEIGDQALLTIAQASQALTADRNLI 552 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAE----- 226 GR+GGEEF ++ + LA++L+ +I IN+ + +T+SAG+A Sbjct: 553 GRIGGEEFLILLPNTNAERVWELAHELQTLITRYGAINLPV--ELKLTVSAGVATLNTEL 610 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRN 253 + + ++ RAD ALY AK +G+N Sbjct: 611 GKQDDSFARLLKRADNALYDAKNAGKN 637 >gi|331014538|gb|EGH94594.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 712 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q+N G I + S GIA C + ++ AD A+Y A Sbjct: 371 QAAKIAEKLIERVSGRRQVN---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426 Query: 248 KKSGRNR 254 K++GR + Sbjct: 427 KRAGRQQ 433 >gi|313683100|ref|YP_004060838.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM 16994] gi|313155960|gb|ADR34638.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM 16994] Length = 283 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 17/163 (10%) Query: 103 LSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +++ID L+ L N ++ FI Y S++ D+D FK IND +GHPVGD+V+ Sbjct: 127 MAKIDPLTRLYNRNSIEEFAQLFIDEAQRYQTSFSVIMVDLDDFKHINDVYGHPVGDEVL 186 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 LS + + +GR GGEEF ++ +A LA LR SS Sbjct: 187 KKLSVIFQDLIRSSDRIGRWGGEEFIILCPQTTYLQAKELAERLR-------FGFSSHEF 239 Query: 216 IHI---TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I T S G+A ++ I ++I +AD ALY +K+ G+NRV Sbjct: 240 EEIGYKTASFGVALFEDEDTIESLIVKADNALYDSKRLGKNRV 282 >gi|240140799|ref|YP_002965279.1| putative diguanylate cyclase (2 GGDEF motifs) [Methylobacterium extorquens AM1] gi|240010776|gb|ACS42002.1| putative diguanylate cyclase (2 GGDEF motifs) [Methylobacterium extorquens AM1] Length = 355 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 13/170 (7%) Query: 107 DCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 D L+GL N +F SL + S++ DID FK+ ND +GH GD+V+ Sbjct: 181 DALTGLGNRKSFEESLRKSVDLQSASAQQGKPASLIVIDIDSFKRFNDLYGHLTGDQVLR 240 Query: 157 FLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGP 214 ++ + G + R GGEEF + EA +A +R + + + S+G Sbjct: 241 LVAIVMREHIGQKNATLARFGGEEFGIVLPETDRVEARAIAERVRIGVTGRELVKRSTGE 300 Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S+ +T+S G+A + + +++ RAD L+ AK++GRNR + +++EN Sbjct: 301 SLGKVTVSLGVATQREDDNAVSLLERADACLFAAKRAGRNRTLDETEVEN 350 >gi|153827593|ref|ZP_01980260.1| GGDEF family protein [Vibrio cholerae MZO-2] gi|149737931|gb|EDM52836.1| GGDEF family protein [Vibrio cholerae MZO-2] Length = 306 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++L+ ++ LS D L+GL N + L + V DID FK +N Sbjct: 127 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 186 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH VGDKV+ +++ L F + V RLGG+EF + +A+ + + I Sbjct: 187 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETDIAGGVYIADQVCRAI 246 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I++ + ++S G+A + H E ++ ADQA+Y+AK SG+NRV F Sbjct: 247 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 302 >gi|121588015|ref|ZP_01677767.1| ggdef family protein [Vibrio cholerae 2740-80] gi|121547756|gb|EAX57847.1| ggdef family protein [Vibrio cholerae 2740-80] Length = 527 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 493 YLSKSKGRNRV 503 >gi|114320172|ref|YP_741855.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] gi|114226566|gb|ABI56365.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] Length = 295 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/131 (39%), Positives = 69/131 (52%), Gaps = 4/131 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+++ D+D+FK+IND +GH GD V+ S+ L VGRLGGEEF A Sbjct: 157 LTLLMMDLDHFKRINDKYGHAAGDTVLVAFSEVLRRNLRESDAVGRLGGEEFLAVLPDVD 216 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYV 246 Q LA +R I +I +I +T+S G+A H E + I RAD ALY Sbjct: 217 LQGGLALAERIRSEIAELRIPWQE-EAIRLTVSIGVAGILAVH-ESLDDTIMRADDALYQ 274 Query: 247 AKKSGRNRVVC 257 AK +GRNRV Sbjct: 275 AKVAGRNRVTV 285 >gi|89901384|ref|YP_523855.1| diguanylate cyclase [Rhodoferax ferrireducens T118] gi|89346121|gb|ABD70324.1| diguanylate cyclase [Rhodoferax ferrireducens T118] Length = 380 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 7/132 (5%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + ++++ D+D+FK+IND +GH GD+ + ++ + P +GR GGEEF A Sbjct: 252 HGHSMALLIMDLDHFKEINDIYGHQAGDQALINFVARVNALLRGPDQLGRFGGEEFVALL 311 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQA 243 +S EA +A +R +G + T+S G+ R + + T++ RAD A Sbjct: 312 PETSLDEAIAVAERIRGAC------TLAGQAPACTVSIGVTTNRKDNDSVDTLLARADAA 365 Query: 244 LYVAKKSGRNRV 255 LY AK +GRNRV Sbjct: 366 LYRAKAAGRNRV 377 >gi|330956959|gb|EGH57219.1| GGDEF domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 432 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 30/227 (13%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 206 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 255 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND +GH VGD+V+ ++ +L + R GG Sbjct: 256 LNERMQRLGRNYVLAMSDVDHFKKFNDTYGHDVGDQVLRLVASKLSKITSGGGKAYRYGG 315 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + E + +R+ I +I N + P S+ + Sbjct: 316 EEFAIVFAARTLDECMPHLDAIRETIAQYEIQLRNKDNRPQDDQQGRQRRGGAHTGSVSV 375 Query: 219 TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIENN 264 TIS G+AER + + + + ADQALY AK +GRN VV F + Sbjct: 376 TISIGVAERQPEHRSAEEVLKCADQALYAAKGAGRNCVVAFDQLNRR 422 >gi|229515742|ref|ZP_04405201.1| GGDEF family protein [Vibrio cholerae TMA 21] gi|229347511|gb|EEO12471.1| GGDEF family protein [Vibrio cholerae TMA 21] Length = 443 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 15/166 (9%) Query: 103 LSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G+ N AF L N KL+++FFD+D FK+IND GH VGD V+ Sbjct: 269 LSERDSLTGISNRRAFKQQLSHALIKAKRSNMKLALLFFDLDKFKEINDTKGHEVGDLVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214 ++ +L F GRLGG+EF Q+ + + N +++E Q + + Sbjct: 329 QEIAQRLKGSIRESDFCGRLGGDEFVVCL--DLLQDHSGVINKAYQMLEKLQKPLQLNQE 386 Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S+ I +S G+A E+ + P ++ AD+A+Y AK N V C Sbjct: 387 SLEIGVSIGVALYPEQATQVP--ELLRIADEAMYTAKHQSGNTVYC 430 >gi|188532751|ref|YP_001906548.1| HmsT (Hemin storage system protein) [Erwinia tasmaniensis Et1/99] gi|188027793|emb|CAO95650.1| HmsT (Hemin storage system protein) [Erwinia tasmaniensis Et1/99] Length = 365 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 7/178 (3%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQIND 144 ++++L+ S LS +D L+GL N + L ++ ++ DID FK ND Sbjct: 176 LVRQLYEEKETYSDLSMLDPLTGLYNRRGLQNRLENVIDNHTGNHYVLLLDIDNFKSYND 235 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 N+GH +GD+ + +S + + V R GGEEF +E A A +R+ + Sbjct: 236 NYGHAMGDQALTRVSVAIRDAVRSRDIVTRYGGEEFLVILTNVNEAIALKQAERVRQFVL 295 Query: 205 NSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +I + + H+TIS G+A + + AD+ALY+AK GRN V D Sbjct: 296 DLEIPHRFNDKVATHVTISVGVAPLIAND-FDKALAHADRALYLAKSQGRNTVFSLHD 352 >gi|118466529|ref|YP_880652.1| cyclic diguanylate phosphodiesterase domain-containing protein [Mycobacterium avium 104] gi|118167816|gb|ABK68713.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Mycobacterium avium 104] Length = 1304 Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 21/187 (11%) Query: 82 LGYISGSILKELFI----SYNRISQLSR---IDCLSGLLNHSAFISSLGSYNEK------ 128 LG + ++L F+ + N +S+++R D L+GL N + F+ L + Sbjct: 308 LGILVAAVLARQFVVLVDNQNLLSEVAREAFRDNLTGLANRALFVHRLEQAVARRHPDGT 367 Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AA 184 ++++ D+D FK +ND GHP GD+++ ++++L G + RLGG+EFAA A+ Sbjct: 368 PIAVLCLDLDNFKAVNDALGHPAGDELLVRVAERLTAALGDSGTIARLGGDEFAAVIEAS 427 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + S+ A + I I I+ PSI T+ G A C + ++ AD A+ Sbjct: 428 VDESQAAAHRILEAFTGAILIDGIPITVRPSIGFTVCTG-ASTC---TVDQLLRHADLAM 483 Query: 245 YVAKKSG 251 Y AK+ G Sbjct: 484 YAAKREG 490 >gi|221069185|ref|ZP_03545290.1| diguanylate cyclase [Comamonas testosteroni KF-1] gi|220714208|gb|EED69576.1| diguanylate cyclase [Comamonas testosteroni KF-1] Length = 377 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 10/223 (4%) Query: 42 VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101 + + +F + +TP + L LSL+ + + S + + +LK L ++ Sbjct: 118 IALLCGMFFMSLAITPSPQWDAPLAVQLSLLPLIVMHSAYASWSNSRMLKTLARQNLQLK 177 Query: 102 QLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 L RID L+ + + A + S E+ ++ DID FK +ND +GH VGD V Sbjct: 178 LLGRIDPLTTVYSRDYWWKKARAALHQHRSVKEQTCLLVIDIDRFKSVNDLYGHIVGDDV 237 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + + + GR GG+EF ++ +EA +A +R + +QI + P Sbjct: 238 LKLIGLAIRNSLRSNDIAGRYGGDEFTVLCKHTTAREAYSVA--MRICEKIAQIRVRDYP 295 Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 + I+ S G+A ++ I AD ALY AK GR++V+ Sbjct: 296 QLQISASIGVAAADDSFGSVTEWIKAADSALYSAKSGGRDQVM 338 >gi|326794532|ref|YP_004312352.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326545296|gb|ADZ90516.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 454 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 10/161 (6%) Query: 103 LSRIDCLSGLLNHSAFISS------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 L+ D L+G N + L + S++ DID+FK+IND +GH +GDKV+ Sbjct: 295 LATRDKLTGAYNRHKWDEQIKESLDLAQRGVEFSLIMLDIDHFKKINDEYGHQLGDKVLE 354 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + L + R+GGEEFA S ++A + +R IE + + PS Sbjct: 355 YFVTSLNTCLRKSDLLFRMGGEEFAVLLPQQSLEKAEQVGERIRTHIET--MEETHIPS- 411 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T+S GI+ + ++I+ RAD+ALY +K +GRN V Sbjct: 412 -FTVSLGISAYRAADDENSILARADKALYKSKLNGRNTVTL 451 >gi|311106008|ref|YP_003978861.1| diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310760697|gb|ADP16146.1| diguanylate cyclase, GGDEF domain protein 12 [Achromobacter xylosoxidans A8] Length = 395 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 12/178 (6%) Query: 90 LKELFISYNRI----SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138 L + I ++R+ Q + D L+GL++ A+ Y + L+++ DIDY Sbjct: 204 LGTIMIIHDRMLADREQEASTDFLTGLMSRKAWWLQAERYCAQALRTRRPLTLLLLDIDY 263 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK+IND GH GD V+ T VGR+GGEEFA +A Sbjct: 264 FKRINDTHGHAAGDAVLRHFGLLATATLRTGDHVGRVGGEEFAVLFPDMRSDAVMDVAER 323 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 L + + G +I T SAG+A+ E + RAD+ LY AK +GRNR+ Sbjct: 324 LLDSVRRTPCA-HGGSTISYTFSAGVADWMPGESLQAFFERADRKLYAAKAAGRNRIT 380 >gi|306520661|ref|ZP_07407008.1| putative signaling protein [Clostridium difficile QCD-32g58] Length = 238 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 30/225 (13%) Query: 61 LEYILVENLSLVIISIT--ISLLLGYISGSILK-ELFISYNRI---SQLSRIDCLSGLLN 114 L + L + +SLVI+S I+ L ++S + + +F Y+++ Q I ++ LLN Sbjct: 13 LGFKLYQAMSLVILSTHFFITSLAIFVSTMLYRNRVFTYYDKLLISQQYEEISHINNLLN 72 Query: 115 HSAFISSLGSYN-------------------EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L N E ++ + DIDYFKQ NDN+GH GD + Sbjct: 73 DKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDIDYFKQFNDNYGHQKGDYCL 132 Query: 156 AFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ ++++ F + R GGEEF E +A + + LRKIIE+ Sbjct: 133 QNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCDETDAKLKSECLRKIIESCNFERDDV 191 Query: 214 PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 P +T+S G+ + ++ I+ I D+ALY AK+ GRN V Sbjct: 192 PLKCVTVSIGVYTKKIEKAITLNEFISNCDKALYTAKEQGRNCVA 236 >gi|260221000|emb|CBA29127.1| hypothetical protein Csp_A10590 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 641 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 15/178 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFK 140 + + +L ++ +++ +LS D L+ + N + F SL + +++ S ++ DID+FK Sbjct: 448 AAMDQLRLANDQLQRLSMTDSLTQVGNRAFFDQSLVTEHKRASRLKQPLALLLLDIDHFK 507 Query: 141 QINDNFGHPVGDKVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 IND +GHP GD + L+D Q V G + R GGEEFA + S+ +A LA+ Sbjct: 508 AINDTYGHPAGDACLRTLADYMRQKVQRAGD--LLARYGGEEFAVLLINSTLGDALDLAD 565 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253 + R I ++ + G ++ T S G+A S + AD+ALY AK GRN Sbjct: 566 EFRADIAGLEV-VFEGRTLRFTASIGVASAIPDMQFTPSQFVGDADKALYEAKHGGRN 622 >gi|254499426|ref|ZP_05112087.1| hypothetical protein LDG_3465 [Legionella drancourtii LLAP12] gi|254351325|gb|EET10199.1| hypothetical protein LDG_3465 [Legionella drancourtii LLAP12] Length = 1066 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 13/163 (7%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N + S L ++L+I+F D+DYFK IND GH VGDK++ + S Sbjct: 641 DPLTGFANRNLLFQIFQQSASRLSREAKQLAIIFLDLDYFKTINDTMGHEVGDKLLIYFS 700 Query: 160 DQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +Q+ RLGG+EF +L S Q I+ +++ + I G +IH Sbjct: 701 EQIKTCLRAGDLPVRLGGDEFVILLDSLDESMQVKVIIDKIYQQL---AAPVIIQGHTIH 757 Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I+ SAGI+ I ++ +AD ALY AK+ G+N+ +S Sbjct: 758 ISTSAGISLFPKDATDIQGLLKQADTALYRAKELGKNQYQFYS 800 >gi|153823875|ref|ZP_01976542.1| ggdef family protein [Vibrio cholerae B33] gi|126518605|gb|EAZ75828.1| ggdef family protein [Vibrio cholerae B33] Length = 245 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 16/180 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++L+ ++ LS D L+GL N + L + V DID FK +N Sbjct: 66 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 125 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH VGDKV+ +++ L F + V RLGG+EF ++ +A + + I Sbjct: 126 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCRAI 185 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I++ + ++S G+A + H E ++ ADQA+Y+AK SG+NRV F Sbjct: 186 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 241 >gi|153817746|ref|ZP_01970413.1| ggdef family protein [Vibrio cholerae NCTC 8457] gi|153821330|ref|ZP_01973997.1| ggdef family protein [Vibrio cholerae B33] gi|229505043|ref|ZP_04394553.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229518405|ref|ZP_04407849.1| GGDEF family protein [Vibrio cholerae RC9] gi|255745762|ref|ZP_05419710.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262158959|ref|ZP_06030071.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|126511684|gb|EAZ74278.1| ggdef family protein [Vibrio cholerae NCTC 8457] gi|126521148|gb|EAZ78371.1| ggdef family protein [Vibrio cholerae B33] gi|229345120|gb|EEO10094.1| GGDEF family protein [Vibrio cholerae RC9] gi|229357266|gb|EEO22183.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|255736837|gb|EET92234.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262029144|gb|EEY47796.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] Length = 527 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 315 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 374 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 375 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 434 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 435 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 492 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 493 YLSKSKGRNRV 503 >gi|91794451|ref|YP_564102.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91716453|gb|ABE56379.1| GGDEF domain [Shewanella denitrificans OS217] Length = 580 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QL+ D L+GL N A G+Y N LS+ DID+FK++ND +GH GD Sbjct: 415 MRQLAFTDPLTGLSNRRAGTVETGAYLSRFKQDNLALSVAILDIDFFKRVNDTYGHSRGD 474 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + L + R GGEEF G+ A + L I + Sbjct: 475 EVLISFARLLKATVRPSDRLYRWGGEEFLVLFPGADIAAATQVCERLCHTIASKHFEGVG 534 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IT S G+ E + + +++ RAD ALY AK+ GRNRV Sbjct: 535 ----RITSSLGVTEASLDDSLDSLVSRADVALYQAKQQGRNRV 573 >gi|28871952|ref|NP_794571.1| response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28855205|gb|AAO58266.1| response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 551 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + A + +++R ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIHNAHKVLDEIRHRF--AEIHYPAQPADLFC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRN+V Sbjct: 497 TFSAGVVCLGADDDSLSLASQADNALYRAKHAGRNQV 533 >gi|26247049|ref|NP_753089.1| hypothetical protein c1164 [Escherichia coli CFT073] gi|26107449|gb|AAN79632.1|AE016758_236 Hypothetical protein ycdT [Escherichia coli CFT073] Length = 496 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI Sbjct: 326 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVI----KT 381 Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212 +V + G + R+GGEEF + A LA +R+ +E N + I Sbjct: 382 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 441 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 442 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 482 >gi|27381815|ref|NP_773344.1| hypothetical protein bll6704 [Bradyrhizobium japonicum USDA 110] gi|27354984|dbj|BAC51969.1| bll6704 [Bradyrhizobium japonicum USDA 110] Length = 614 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 20/175 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 +++S L+ D L+ L N F L + ++ LS++ D+D+FK+ ND +GH Sbjct: 430 DKLSALASSDGLTALANRRHFDERLEAEWDRAKREGTPLSLLLMDVDHFKRFNDQYGHQA 489 Query: 151 GDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA----AAALGSSEQEAAILANDLRKIIEN 205 GD + ++ L P V R GGEEFA +G EQ + +R+ I++ Sbjct: 490 GDACLRSVAGVLAEQARRPADVAARYGGEEFALLLPNTDMGGCEQ----VGERIRQAIQD 545 Query: 206 SQI-NISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVV 256 I + + PS +T+S G A K +++I AD+ALY AK+SGRNR+V Sbjct: 546 LGILHALNPPSKQVTLSIGGATHMSFADKADCTSLIVAADKALYAAKESGRNRLV 600 >gi|323493946|ref|ZP_08099063.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] gi|323311887|gb|EGA65034.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] Length = 515 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 13/176 (7%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQIN 143 ++ EL S ++ Q S ID L+G+ N S Y E L S+V DID+FK N Sbjct: 329 LIAELEDSRAQLKQQSTIDPLTGIANRRYLYDSAKEYIETLRYRYISVVIVDIDHFKLYN 388 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSS----EQEAAILAND 198 D++GH GDK + ++ L V R GGEEF S E + L Sbjct: 389 DSYGHIAGDKALNQIAQTLKQAPTQYEHLVARYGGEEFCIVLACDSPIEIEPYVSSLVTS 448 Query: 199 LRKI-IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++++ IENSQ + +I + ++G ER H+ +S +I AD+ALY K +GRN Sbjct: 449 VQQLNIENSQSPTAECVTISVGATSGQIERYHQ--LSALIQFADRALYQVKDTGRN 502 >gi|304312348|ref|YP_003811946.1| hypothetical protein HDN1F_27200 [gamma proteobacterium HdN1] gi|301798081|emb|CBL46303.1| Hypothetical protein HDN1F_27200 [gamma proteobacterium HdN1] Length = 613 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 16/172 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R++ ++ D L+G+ N F L + N LS++ DIDYFK+ ND +GH G Sbjct: 424 RLALVATTDGLTGIANRRRFDEVLATELVRLRRSNVPLSLMLLDIDYFKRFNDEYGHVAG 483 Query: 152 D----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 D ++ A L+ + T V R GGEEFAA ++E+ AA LA R IE+ Sbjct: 484 DDCLRRIGALLASSISRASDT---VARYGGEEFAAILPFTNERGAAALAECFRSGIESLG 540 Query: 208 I-NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + S S +T+S G+ ++ ++ AD LY AK+ GRNRVV Sbjct: 541 IPHTGSTVSAFVTVSIGVVTLSAGMGSVAGVVELADAQLYQAKRMGRNRVVA 592 >gi|238924726|ref|YP_002938242.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Eubacterium rectale ATCC 33656] gi|238876401|gb|ACR76108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Eubacterium rectale ATCC 33656] Length = 860 Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 10/170 (5%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI + D L+GL N + FI + + ++++ D+D FK IND GH G Sbjct: 430 RIENQANNDFLTGLYNRMRCEQDLAKFIDDSVKNDTRGAMIYIDLDDFKHINDGLGHQYG 489 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ +S L V G R+GG+EF GSS + ND+++I Sbjct: 490 DVLLKAISHSLTQVKGIENHCYRMGGDEFIVIVTGSSVDRLESIINDIQQIFVRPW--FL 547 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + TISAG+A + +I RAD AL+ AKK G+NR+ +++ Sbjct: 548 KGEDYYCTISAGVAFFPTDARTVEDVIRRADIALFNAKKEGKNRIEFYNE 597 >gi|77460305|ref|YP_349812.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gi|77384308|gb|ABA75821.1| putative GGDEF domain sensory box protein [Pseudomonas fluorescens Pf0-1] Length = 308 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 8/167 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y +Q + D L+G N A +L + + LS++ DID+FKQ+ND GH Sbjct: 140 YRAATQSALRDPLTGAGNRIAMEQTLHREIEMSRRHLQPLSLLMLDIDHFKQVNDLHGHS 199 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ + V R GGEEF + AA++ LR+ + +Q Sbjct: 200 AGDDVLKAVAASIKGQLRNVDMVFRYGGEEFLILLSNTGRDAAAMVGERLRQAAQ-AQDY 258 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ I +T+S G + E +++ RAD ALYVAK+ GRNR+ Sbjct: 259 YANNQLIELTVSLGCSTLLPGESADSLLRRADSALYVAKREGRNRLT 305 >gi|89093798|ref|ZP_01166744.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanospirillum sp. MED92] gi|89081928|gb|EAR61154.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanospirillum sp. MED92] Length = 970 Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 16/196 (8%) Query: 81 LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132 LL Y+S S + L ++ +++ D L+GL N L + L++ Sbjct: 396 LLRYVSLFSDITALKKQQQQLEKIAHYDALTGLPNRVLLSDRLQQAILQAKRHKRLLAVA 455 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQ 190 FFD+D FK++ND GH +GDK++ L+++ + RLGG+EF L SSE+ Sbjct: 456 FFDLDGFKEVNDTHGHSIGDKLLIELAERSKQALREGDSLARLGGDEFVVVLQDLHSSEE 515 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAK 248 +L L+ I + +N + I ++ S GI + I +I +ADQA+YVAK Sbjct: 516 SLPVLERLLKAISKPIFMNHT---EICVSASIGITFYPQADEIDADQLIRQADQAMYVAK 572 Query: 249 KSGRNRVVCFSDIENN 264 +SG+NR F D E++ Sbjct: 573 QSGKNRYHIF-DTEHD 587 >gi|330501458|ref|YP_004378327.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328915744|gb|AEB56575.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina NK-01] Length = 548 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 9/183 (4%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSA----FISSLGSYNEK---LSIVFFDID 137 +S L+ + + + ++ + + D L+GL N F L + L++ D+D Sbjct: 367 VSEERLRTISVLHEQLREQALCDPLTGLYNRRYLDEFFDRELARAQRESLPLALALIDLD 426 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK++ND GH VGD V+ ++ L+ + V R+GGEEF G Q A + Sbjct: 427 HFKRLNDECGHLVGDDVLKAVAQHLLDNLRSTDAVFRIGGEEFLLILPGLDAQAAEVRLE 486 Query: 198 DLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR + + G ++ +T+SAGIA + E + ++ AD ALY AK+ GRNR+ Sbjct: 487 SLRLQLADMDQPTRIG-ALPVTLSAGIAVWPTNGEKLDELLQAADMALYSAKRGGRNRIA 545 Query: 257 CFS 259 S Sbjct: 546 LAS 548 >gi|323953280|gb|EGB49146.1| GGDEF domain-containing protein [Escherichia coli H252] Length = 455 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI Sbjct: 285 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 340 Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212 +V + G + R+GGEEF + A LA +R+ +E N + I Sbjct: 341 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 400 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 401 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441 >gi|301023195|ref|ZP_07186996.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] gi|300397173|gb|EFJ80711.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] Length = 455 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI Sbjct: 285 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 340 Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212 +V + G + R+GGEEF + A LA +R+ +E N + I Sbjct: 341 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 400 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 401 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441 >gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille] gi|151282068|gb|ABR90478.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 876 Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 18/172 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQIND 144 EL I Y + D L+ L N +++L + E L+++F D+D+FK +ND Sbjct: 436 ELQIEYQAMH-----DMLTDLPNRRFLVNTLNTAMETSRLRQSSLTMLFCDLDFFKSVND 490 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+ + +S ++V T FV R GG EF SS EA I AN + + Sbjct: 491 THGHDFGDQCLIEISKRIVTALPTADFVARFGGNEFVILT-NSSLAEATIKANTIMAAV- 548 Query: 205 NSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254 S+ I + I S GIA+ H+ P + +I AD A+Y AK+ GRNR Sbjct: 549 -SERLIFDNVVVKIQTSIGIAQLNAGHQSP-ADLIRDADAAMYQAKERGRNR 598 >gi|15077777|gb|AAK83338.1|AF372703_9 unknown [Pseudomonas syringae pv. syringae] Length = 534 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 112/259 (43%), Gaps = 33/259 (12%) Query: 23 SPHTFMIYFSIFFSIFIATVIFIANIFLFYI--------GLTPFYGLEYILVENLSLVII 74 SPH Y ++ ++ +A + F + GL Y ++ E V+ Sbjct: 6 SPHMVRKYLYTLLWFYVLSIFLLAIAWEFELESLAMAAMGLP--YDQDFENAERWRFVLT 63 Query: 75 SITISLLLGYIS----GSILKELFISYNRI-------SQLSRIDCLSGLLN----HSAFI 119 S ++L I ++++L SYN + L+R D LSGLLN H + Sbjct: 64 STGFAVLSMVIPFILLKRLMQQLHSSYNDLLESQALSESLARHDPLSGLLNRRVFHEQLV 123 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178 + L + ++ D+D FK IND GH GD I +++ L G V RLGG+ Sbjct: 124 ARLQQPATQTAVFLIDLDKFKLINDTHGHAAGDAAICAVAESLRDATVGWQASVARLGGD 183 Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPIST 235 EF A G S E A LA ++ I + + P + ++ + G IA +P Sbjct: 184 EFGLAVSGDFSHAELAPLAENILAKIAAFSVGL---PRVALSATLGIAIAPMDGSDP-DL 239 Query: 236 IIYRADQALYVAKKSGRNR 254 ++ RAD A+Y K GR R Sbjct: 240 LLQRADSAMYRGKAGGRAR 258 >gi|320355079|ref|YP_004196418.1| response regulator receiver modulated diguanylate cyclase [Desulfobulbus propionicus DSM 2032] gi|320123581|gb|ADW19127.1| response regulator receiver modulated diguanylate cyclase [Desulfobulbus propionicus DSM 2032] Length = 326 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 10/179 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDN 145 + L S R +LS +D L+GL N ++ ++ + L+++F DID FKQ+ D+ Sbjct: 138 QALKASRARYRELSFLDDLTGLFNTRYLYRNMQAHFNRDPEQSLTVIFMDIDRFKQVVDS 197 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH G + IA L+ + + + GG+EF + LA +R I Sbjct: 198 HGHLNGSRAIAELAGIIKSLLPQGGYGVSYGGDEFVVVLANLDGEAGRRLAEQMRAAIAG 257 Query: 206 SQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + G S+H+T+S G+A E H + ++ +AD AL+ +K GRN V+ F+D+ Sbjct: 258 RRFLRGQGLSVHLTVSCGMASYPEDAHD--LVDLLGKADHALFASKSRGRNTVISFADM 314 >gi|117623220|ref|YP_852133.1| diguanylate cyclase [Escherichia coli APEC O1] gi|218557913|ref|YP_002390826.1| diguanylate cyclase [Escherichia coli S88] gi|115512344|gb|ABJ00419.1| predicted diguanylate cyclase [Escherichia coli APEC O1] gi|218364682|emb|CAR02372.1| putative diguanylate cyclase [Escherichia coli S88] gi|222032786|emb|CAP75525.1| Inner membrane protein ycdT [Escherichia coli LF82] gi|294494001|gb|ADE92757.1| diguanylate cyclase domain protein [Escherichia coli IHE3034] gi|307627562|gb|ADN71866.1| putative diguanylate cyclase [Escherichia coli UM146] gi|312945594|gb|ADR26421.1| putative diguanylate cyclase [Escherichia coli O83:H1 str. NRG 857C] gi|315287342|gb|EFU46753.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3] gi|324007869|gb|EGB77088.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2] Length = 455 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI Sbjct: 285 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 340 Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212 +V + G + R+GGEEF + A LA +R+ +E N + I Sbjct: 341 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 400 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 401 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441 >gi|87119011|ref|ZP_01074909.1| sensory box/GGDEF domain/EAL domain protein [Marinomonas sp. MED121] gi|86165402|gb|EAQ66669.1| sensory box/GGDEF domain/EAL domain protein [Marinomonas sp. MED121] Length = 816 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 29/230 (12%) Query: 54 GLTPFYGLEYILVENLS---LVIISITISLLLGYIS----GSILKELFISYNRISQLSRI 106 L Y +E L + ++ ++ IS T + G+ S S + E ++ Q++ Sbjct: 312 NLEESYEVERELTDGMARKRVLQISYTAIVYEGHASLLLVASDMTEKITREKQLIQVAYQ 371 Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F+ LG S+ + ++++ D+D F+ IND+ GH VGD +I LS Sbjct: 372 DQLTGLPNRELFLDRLGMAITYTASHKQYGALLYIDLDEFRLINDSKGHSVGDSIILALS 431 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISS------ 212 D+L + + R+GG+EF G E +EAAI KI+ +++ +S Sbjct: 432 DRLASKVNSSNTLARIGGDEFCIILSGVDEDKEAAI-----NKIVSTAELILSDIRQPLT 486 Query: 213 --GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 G +T S G+ ++ + +++ D A+Y AK +GRNR+ F Sbjct: 487 IKGNEFRVTASIGVVIFSEEDSDAEELFKFGDTAMYNAKSAGRNRISMFK 536 >gi|94984673|ref|YP_604037.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300] gi|94554954|gb|ABF44868.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300] Length = 349 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 60/153 (39%), Positives = 81/153 (52%), Gaps = 6/153 (3%) Query: 106 IDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 +D L+ L N F L ++ E ++ D+D FK +ND+ GHP GD+V+ L+ L Sbjct: 196 LDALTNLHNRRQFDEDLPAFGIEEGTFLLLLDLDRFKALNDSCGHPFGDRVLRELAVLLQ 255 Query: 164 V-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 V GT V RLGGEEFA +S AA +A LR + P + ITISA Sbjct: 256 QGVRGTDR-VYRLGGEEFAVLLRQTSPTGAARVAERLRSQVREQLGTRVGRPDLTITISA 314 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G+ C +P T + AD LY AK+SGRNR+ Sbjct: 315 GLTP-CTADP-DTTVRTADHLLYEAKRSGRNRI 345 >gi|23007588|ref|ZP_00049393.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 359 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 16/180 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R++ LS D L+ L N F L + L ++ D+D+FKQ+ND GH G Sbjct: 163 RLTVLSETDSLTALPNRRHFSERLEEAWRLAAEQDAWLGVILVDLDHFKQLNDTAGHAEG 222 Query: 152 DKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D+ + +++ L V GR GGEEFA G+ + LR + + I Sbjct: 223 DRCLIVVAEALQACVEARAGLAGRYGGEEFAVFLPGADPPAVRVAGEALRLAVSDLAICH 282 Query: 211 SSGP-------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 P S+ +T + G A C + + ++ AD ALY AK GR+RV F N Sbjct: 283 PGRPSGARMTASVGVTAARGRARECGIQ-VPDLLKAADFALYAAKSDGRDRVEIFMPAAN 341 >gi|313681222|ref|YP_004058960.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313154082|gb|ADR32760.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 509 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 19/203 (9%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA-------FISSLG 123 L I S TI +LL I I ++L + + L+ D L+GL N ++ LG Sbjct: 307 LTISSTTIFILL-IIVYRINRKLNQTSAELFDLATHDPLTGLFNRRGMMERLKFLLAELG 365 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--- 180 + ++++ D+D FK +ND++GH +GD+++ +S ++ + + R+GG+EF Sbjct: 366 RNKKNGALIYLDLDNFKPLNDSYGHAIGDELLIQVSKRIGMTVRAIDTIARMGGDEFLVI 425 Query: 181 -AAAALGSSEQEAAILANDLRKII-ENSQINISSGPSIHITISAGIA----ERCHKEPIS 234 + ++A +A LR ++ E I+I+ I +ISA I + HK Sbjct: 426 LSHMEPTKVYEDAKQIAEKLRTVLNEPFSISINEELEIKHSISASIGMVIFDEHHKA--D 483 Query: 235 TIIYRADQALYVAKKSGRNRVVC 257 TII AD A+Y AK+ GRNRVV Sbjct: 484 TIIIHADAAMYEAKEQGRNRVVV 506 >gi|297624605|ref|YP_003706039.1| diguanylate cyclase with GAF sensor [Truepera radiovictrix DSM 17093] gi|297165785|gb|ADI15496.1| diguanylate cyclase with GAF sensor [Truepera radiovictrix DSM 17093] Length = 701 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 8/167 (4%) Query: 98 NRISQLSRIDCLSGLLN--HSAFISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPV 150 R+ Q S D L+GL N H L + E LS+V FD+D+FK+ ND +GH Sbjct: 516 ERLRQQSVRDPLTGLFNRRHLEEALELELHRAERRREPLSVVMFDVDHFKRFNDTYGHDA 575 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S + R GGEEF G A A LR ++ + Sbjct: 576 GDAVLRSVSALVTRHIRAGDLPCRFGGEEFLLVQPGLGAPHAWERAESLRAAVQALALEH 635 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++IS G+A H ++ AD+ALY AK++GRNR V Sbjct: 636 AGRALGRVSISVGVATYPDHAASAEALVRAADEALYRAKRAGRNRTV 682 >gi|257484751|ref|ZP_05638792.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330986383|gb|EGH84486.1| GGDEF domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011195|gb|EGH91251.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 523 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 18/178 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQIND 144 EL I+ N + ++ D L+ L N F ++L S N ++I+ DID+FKQ ND Sbjct: 328 ELNIARNELEIIAHTDSLTHLANRRCFDAALQQEWGRASRNTATIAIILLDIDWFKQYND 387 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199 +GH +GD + Q+ + G + R GGEEF + A +A + Sbjct: 388 TYGHLLGDDCL----KQVAGLIGNSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKI 443 Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R +E ++I S+ P +TIS+G+ K+ + + AD+ LY+AK GRNRV Sbjct: 444 RSSVETNRIEHSASPLGKLTISSGVVSINAAEKDGHTAALAEADRLLYLAKTRGRNRV 501 >gi|301384376|ref|ZP_07232794.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato Max13] gi|302061908|ref|ZP_07253449.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato K40] gi|302132336|ref|ZP_07258326.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 712 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q+N G I + S GIA C + ++ AD A+Y A Sbjct: 371 QAAKIAEKLIERVSGRRQVN---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426 Query: 248 KKSGRNR 254 K++GR + Sbjct: 427 KRAGRQQ 433 >gi|237801120|ref|ZP_04589581.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023977|gb|EGI04034.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 719 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 18/170 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 +I L+ D L+GL N + + LG N + +++F D+DYFK IND+ GHPVG Sbjct: 275 QIHHLAYHDPLTGLPNRALLMDRLGQQLSLLKHQNLRGALLFLDLDYFKHINDSLGHPVG 334 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA------AALGSSEQEAAILANDLRKIIEN 205 D V+ ++ +L V RLGG+EF +L ++ +L+++LR ++ Sbjct: 335 DSVLNVVAARLEASVRQEDTVARLGGDEFVVLICGLDGSLDEVTRKVRVLSDNLRVLL-- 392 Query: 206 SQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ G + +T S GI P + ++ RAD ALY AK +GRN Sbjct: 393 AEPMFLDGHRLQVTPSIGIVLIPDDGLTP-ADVLKRADIALYRAKDAGRN 441 >gi|259907764|ref|YP_002648120.1| Putative exported protein, probable fragment [Erwinia pyrifoliae Ep1/96] gi|224963386|emb|CAX54873.1| Putative exported protein, probable fragment [Erwinia pyrifoliae Ep1/96] gi|283477624|emb|CAY73540.1| Protein yhjK [Erwinia pyrifoliae DSM 12163] Length = 375 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 8/178 (4%) Query: 85 ISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDY 138 I ++L + + +++I +L ++ D ++GLLN + L S + +++ DID Sbjct: 182 IKRAMLAGIALLHDKIGRLRSEAQTDPMTGLLNRRGLDAVLDYFFSTKQPFAVLALDIDR 241 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +ND FGH GD VI ++ QL + + R GGEEF G+ A ++A Sbjct: 242 FKSVNDAFGHAAGDTVIKTVAHQLELGARQADVLCRNGGEEFLMLLPGADRDRALMVAER 301 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +RK IE Q+ + + ++ I+I E + +A +ALY AK +GRN VV Sbjct: 302 VRKRIE--QLRMEAAGNVTISIGISFWSSDSGEDMHCAFGQAVEALYRAKNAGRNCVV 357 >gi|254500844|ref|ZP_05112995.1| MASE1 domain family [Labrenzia alexandrii DFL-11] gi|222436915|gb|EEE43594.1| MASE1 domain family [Labrenzia alexandrii DFL-11] Length = 497 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 29/184 (15%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFKQ 141 EL + + +L+ D L+G N F L NE+L+ ++ FD+D+FK+ Sbjct: 309 ELEEAKRKAEELASTDALTGAPNRRVF---LKRGNEELNRAIRGGEDACVIMFDLDHFKE 365 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFV------GRLGGEEFAAAALGSSEQEAAIL 195 +ND +GH +GD++ L D V G FV GR+GGEEFA ++ + Sbjct: 366 MNDTYGHQIGDRI---LKDCAAVTMG---FVRNYDLFGRIGGEEFAVFLPNTTVSGGQNV 419 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254 A LR+ + S ++ T S GI+ K+ +S ++ RAD A+Y AK GRN Sbjct: 420 AEKLRQAFLERSV---SSHKLNYTASFGISPVLEKDRALSMVLRRADLAMYRAKADGRNC 476 Query: 255 VVCF 258 VV + Sbjct: 477 VVVY 480 >gi|28872128|ref|NP_794747.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28855382|gb|AAO58442.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 719 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 261 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 317 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 318 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 377 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q+N G I + S GIA C + ++ AD A+Y A Sbjct: 378 QAAKIAEKLIERVSGRRQVN---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 433 Query: 248 KKSGRNR 254 K++GR + Sbjct: 434 KRAGRQQ 440 >gi|330873862|gb|EGH08011.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 712 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q+N G I + S GIA C + ++ AD A+Y A Sbjct: 371 QAAKIAEKLIERVSGRRQVN---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426 Query: 248 KKSGRNR 254 K++GR + Sbjct: 427 KRAGRQQ 433 >gi|302867269|ref|YP_003835906.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029] gi|315506325|ref|YP_004085212.1| diguanylate cyclase [Micromonospora sp. L5] gi|302570128|gb|ADL46330.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029] gi|315412944|gb|ADU11061.1| diguanylate cyclase [Micromonospora sp. L5] Length = 260 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 78/155 (50%), Gaps = 10/155 (6%) Query: 107 DCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL N AF + + L V D+D FKQ+ND +GH GD+V+ ++ Q Sbjct: 100 DPLTGLPNRRAFFRLAAALLTDPAGQPLVAVVLDLDNFKQVNDRYGHAAGDQVLVSVA-Q 158 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITI 220 + F P V RLGG+EF A L S + + + R++ E I G SI +T Sbjct: 159 RLAAFAGPNLVARLGGDEF-AGLLASPTADRRWIEHATRRLCEALAAPIPLGARSIQVTA 217 Query: 221 SAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNR 254 S G+A C + ++ + RAD A+Y AK G R Sbjct: 218 SVGLAPVHCPTQ-LTDALCRADAAMYEAKTLGAAR 251 >gi|229521488|ref|ZP_04410907.1| GGDEF family protein [Vibrio cholerae TM 11079-80] gi|229341586|gb|EEO06589.1| GGDEF family protein [Vibrio cholerae TM 11079-80] Length = 281 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 69 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTHIYNRRFFSQHLCKMLDE 128 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 129 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 188 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 189 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 246 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 247 YLSKSKGRNRV 257 >gi|332139558|ref|YP_004425296.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Alteromonas macleodii str. 'Deep ecotype'] gi|327549580|gb|AEA96298.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Alteromonas macleodii str. 'Deep ecotype'] Length = 353 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 1/128 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS V DID+FK+IND++GH VGD+V+ ++ + + V R GGEEF ++ Sbjct: 226 LSAVVVDIDHFKKINDSYGHDVGDQVLIHVTSLMKEAVRSSDVVARTGGEEFLVLFPHAT 285 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 +A LA +R++IE ++ + IT S G+A + + +AD LY AK Sbjct: 286 LTQAVKLAETMRRLIEERPF-VAGDINHPITASFGVATALTDTNLHASLKQADDNLYKAK 344 Query: 249 KSGRNRVV 256 +GRNRV+ Sbjct: 345 NAGRNRVM 352 >gi|117920926|ref|YP_870118.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117613258|gb|ABK48712.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 467 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 4/156 (2%) Query: 107 DCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D LSGLLN F+ L + N + S+ D+D FK IND +G VGD+VI L+ + Sbjct: 312 DPLSGLLNRRGFMPQLTNLNGQTVRYSVAMLDLDNFKMINDTYGDSVGDRVIQLLAQLIH 371 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + RLGGEEFA ++ + +RK I + +I+ T+S G Sbjct: 372 NHSRSQDIAARLGGEEFALVLRDIDAEQVYPVLERIRKSFAEMSIA-AEEHTIYCTVSIG 430 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 E ++++ AD+ALY AK G+N +V + Sbjct: 431 WVEYQQGIAGESLLHLADKALYQAKAKGKNTIVKYQ 466 >gi|323492416|ref|ZP_08097564.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] gi|323313203|gb|EGA66319.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] Length = 319 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 15/180 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---------IVFFDIDYFK 140 L +++ +Y I S D L+GLLN L E + + D+D+FK Sbjct: 128 LAKIYRNYLIILHESERDKLTGLLNRKTLEERLSYCFEVVHRPQDEINAWVAIIDLDHFK 187 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH +GD+V+ + Q+ F + R GGEEF +Q + R Sbjct: 188 AINDTYGHMIGDEVLLLFAQQMQNFFTDQEQLFRFGGEEFVVLLPQQDKQACYNRLDSFR 247 Query: 201 KIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + IE+ + P + ++T S G+ E + TI+ AD ALY AK++GRN++ C+ Sbjct: 248 RHIESFRF-----PQVANLTFSCGVCGITRNEYLPTILDHADSALYNAKENGRNQICCYE 302 >gi|254491592|ref|ZP_05104771.1| hypothetical protein MDMS009_1927 [Methylophaga thiooxidans DMS010] gi|224463070|gb|EEF79340.1| hypothetical protein MDMS009_1927 [Methylophaga thiooxydans DMS010] Length = 805 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 9/171 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N++S + D L+GL+N + F + ++ ++ F D+D FK IND GH Sbjct: 359 NKLSYQATHDNLTGLINRTEFERRLIELVQDARQHDSVHALCFIDLDQFKVINDTCGHIA 418 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ L +L+ + RLGG+EFA ++ +A ++R++IE Q + Sbjct: 419 GDELLRQLGQRLIGQVRKSDTLARLGGDEFAILMRHCDPGQSEKVATEVREVIELFQF-V 477 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I S G++ H ++ ++ +AD A Y AK +GRNRV + D Sbjct: 478 WDSRVFTIGASIGVSSIHRHTTDMTEVLKQADTACYAAKNAGRNRVYIYQD 528 >gi|182414373|ref|YP_001819439.1| response regulator receiver modulated diguanylate cyclase [Opitutus terrae PB90-1] gi|177841587|gb|ACB75839.1| response regulator receiver modulated diguanylate cyclase [Opitutus terrae PB90-1] Length = 300 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 + QL+ D L+GLLN F L ++ + +V DID+FK IND GHP GD Sbjct: 131 MRQLATHDQLTGLLNRREFDRELAEERDRARRFEHPIGLVMVDIDHFKAINDTHGHPAGD 190 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ ++ + + R GGEEFA + S A A + + + I + + Sbjct: 191 TVLREVARRMSAEARSVDRLARFGGEEFALIVVESDRAAALEAAQRMWAAVRRTPIALGN 250 Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 G + +T+SAG A H + T+I AD+ALY AK +GR+RV Sbjct: 251 GVQLVVTVSAGAAALPHDADSEETLIAAADRALYAAKAAGRDRV 294 >gi|170757365|ref|YP_001782986.1| putative diguanylate cyclase [Clostridium botulinum B1 str. Okra] gi|169122577|gb|ACA46413.1| putative diguanylate cyclase [Clostridium botulinum B1 str. Okra] Length = 437 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 12/173 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144 E + + N+I +LS I L+ LN +F+ L N++ +SIVF D+DYFK+ ND Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGSFMEKLKDEFDDSKKNKRHISIVFIDVDYFKEYND 314 Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 N+GH GDKV+ + ++ V VGR GG+EF E ++A ++ K I Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAVEISKEI 374 Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +I S S + T+S G+A K E I +I AD+ALY +K++GR+ Sbjct: 375 NKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYKSKENGRD 427 >gi|153001535|ref|YP_001367216.1| diguanylate cyclase [Shewanella baltica OS185] gi|151366153|gb|ABS09153.1| diguanylate cyclase [Shewanella baltica OS185] Length = 579 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 70/133 (52%), Gaps = 8/133 (6%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 L I+ FDID FKQ ND +GH GD+ + + + + P + R GGEEF S Sbjct: 438 LGIILFDIDNFKQFNDRYGHVAGDQCLKNIVNAAKSILKRPTDMLARYGGEEFMIVLPSS 497 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIAERCHKEP----ISTIIYRADQ 242 +E A LR+ I + +I P I TISAGI C + P +++I RAD+ Sbjct: 498 HLEEVYQFAERLREKIISLEIPHEDSPHAGILTISAGIT--CWQLPQQLDANSLINRADE 555 Query: 243 ALYVAKKSGRNRV 255 ALY AK +GRNR Sbjct: 556 ALYHAKLTGRNRT 568 >gi|330972078|gb|EGH72144.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 505 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 23/181 (12%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144 EL I+ N + ++ D L+ L N F ++L S N+ ++I+ DID+FKQ ND Sbjct: 309 ELNIARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYND 368 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199 +GH GD + Q+ + G + R GGEEF + A LA + Sbjct: 369 TYGHLQGDDCLR----QVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKI 424 Query: 200 RKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNR 254 R IE S I SS P ++IS+G+ AE+ K+ + + AD+ LY+AK GRNR Sbjct: 425 RSSIEASCIEHSSSPLGRLSISSGVVAINAAEK--KDAHTAALKEADRLLYLAKTKGRNR 482 Query: 255 V 255 V Sbjct: 483 V 483 >gi|304411133|ref|ZP_07392749.1| diguanylate cyclase with extracellular sensor [Shewanella baltica OS183] gi|307301744|ref|ZP_07581502.1| diguanylate cyclase with extracellular sensor [Shewanella baltica BA175] gi|304350668|gb|EFM15070.1| diguanylate cyclase with extracellular sensor [Shewanella baltica OS183] gi|306913782|gb|EFN44203.1| diguanylate cyclase with extracellular sensor [Shewanella baltica BA175] Length = 484 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139 ++ ++L S + LS D L+ L N F + L NE+ + +V DIDYF Sbjct: 310 TLRQQLEASNAELEFLSNHDPLTKLYNRHYF-NRLFINNEQHDKSAKAGMCLVMIDIDYF 368 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND GH VGD+++ +S L V R GGEEF SS L + Sbjct: 369 KEINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCMRI 428 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I++ Q ++ +T S G+A+ EP+ RAD+ALY AK GRN++ Sbjct: 429 AERIKHYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQM 480 >gi|300088231|ref|YP_003758753.1| diguanylate cyclase with PAS/PAC sensor [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527964|gb|ADJ26432.1| diguanylate cyclase with PAS/PAC sensor [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 300 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 2/131 (1%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA 183 Y+ ++ FDID FK +NDN+GH +GD+V+ ++ ++ +P R GGEEF Sbjct: 167 YDWPFGVILFDIDNFKAVNDNYGHDIGDEVLKMVARTIMANIRSPQSLFFRWGGEEFVIV 226 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 + + +A +R ++ S + + + +T+SAG+ + TII RAD+ Sbjct: 227 GTNVNGLQLYDIAERMRNLVSCSML-TQNDLELSVTVSAGVTVARPGDNSETIIRRADEL 285 Query: 244 LYVAKKSGRNR 254 +Y++KK+G+NR Sbjct: 286 MYLSKKTGKNR 296 >gi|229521762|ref|ZP_04411180.1| GGDEF family protein [Vibrio cholerae TM 11079-80] gi|229341356|gb|EEO06360.1| GGDEF family protein [Vibrio cholerae TM 11079-80] Length = 312 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 83/167 (49%), Gaps = 8/167 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS + S+ID L+ L N F S + L ++ FDID+FKQIND +GHP GD Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L R GGEEF LA ++R +E+ + + Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRCYVESHTL-MWQ 264 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+SAG A H +++ ADQAL +AK+ GRNRV+ Sbjct: 265 GQQIALTLSAGCTIGAMMSHN--WDNLLHTADQALLLAKRLGRNRVI 309 >gi|226309056|ref|YP_002769016.1| hypothetical protein RER_55690 [Rhodococcus erythropolis PR4] gi|226188173|dbj|BAH36277.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 775 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 9/187 (4%) Query: 80 LLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIV 132 ++LG+ GS + E ++ I +L+ D L+GL N AF +L + ++++ + Sbjct: 322 VILGWRGVGSDITERYVHEQEILRLAATDSLTGLPNRRAFGVALEEAINSRAPDKQVLVG 381 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D FK +ND GHP+GD+++ ++ +L V G+ M R+GG+EF SS + Sbjct: 382 ILDLDNFKSVNDTLGHPIGDQLLLEVTKRLRKVVGSDM-CSRMGGDEFGLIVCTSSRDDP 440 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 ++ + +++ + + TI A + ++ AD ALY AK +GR Sbjct: 441 GVIFDRYLEVLHEPFFVEGNRIEVRATIGYSSAPEDSTD-ADGLVMLADLALYEAKSTGR 499 Query: 253 NRVVCFS 259 NRV FS Sbjct: 500 NRVGKFS 506 >gi|213967857|ref|ZP_03396003.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] gi|213927200|gb|EEB60749.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] Length = 719 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 261 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 317 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 318 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 377 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q+N G I + S GIA C + ++ AD A+Y A Sbjct: 378 QAAKIAEKLIERVSGRRQVN---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 433 Query: 248 KKSGRNR 254 K++GR + Sbjct: 434 KRAGRQQ 440 >gi|330957167|gb|EGH57427.1| GGDEF domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 690 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 82/161 (50%), Gaps = 8/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKV 154 Q + +D L+ L N +A+ L EK S++ D+D+FK+IND +GH GDKV Sbjct: 528 QKALVDTLTELPNRAAWGERLEHEMAQWQREKNSLLVCILDLDHFKRINDGYGHLAGDKV 587 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ F+ R GGEEF + L ++LR +E + G Sbjct: 588 LKIVANVFKKRLRPGDFLARFGGEEFVMLLPATVPDVGLKLLDELRAAVELCPFHFK-GE 646 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E T I RADQALY AK++GRNRV Sbjct: 647 RVTITVSMGMTAFRLGERSDTAIKRADQALYKAKENGRNRV 687 >gi|329890340|ref|ZP_08268683.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] gi|328845641|gb|EGF95205.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] Length = 609 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +L L +V D+D+FK+ ND FGH GD V+ ++ Sbjct: 444 DPLTGLFNRRYMEEALALEVARAARSGAPLCVVMCDVDHFKRFNDEFGHEAGDVVLQAVA 503 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L F V R GGEEF A G+ + A +R+ I + + P T Sbjct: 504 AELGHRFRDGDIVCRYGGEEFIVIAPGTKAETLAPRVETVRQAIAAIALRLGKQPLGSST 563 Query: 220 ISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+AE + ++ AD ALY AKK GRNRVV Sbjct: 564 MSFGVAEWSKGMNRDGDALVQAADAALYRAKKEGRNRVV 602 >gi|296272919|ref|YP_003655550.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296097093|gb|ADG93043.1| diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] Length = 631 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%) Query: 101 SQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +LS D L+ + N + + LSI+ DID FK INDN+GH GD+ Sbjct: 473 EKLSNTDALTKVYNRRFLEDFSKKYFEIIKREKTTLSILIVDIDDFKTINDNYGHEAGDE 532 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ L + + F+ RLGG+EF S+ + A I+A L K I ++ N Sbjct: 533 VLLKLVELMQNKIRENDFIVRLGGDEFLVLLPNSNIKGAKIVAEKLLKSICEAKNNYK-- 590 Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G AE + I+ +I RAD+ LY AKK+G+N++ Sbjct: 591 ---RFTVSIGSAEFNLEDKDINCLIRRADEELYKAKKAGKNQL 630 >gi|289678766|ref|ZP_06499656.1| GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 524 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 18/178 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144 EL I+ N + ++ D L+ L N F ++L S N+ ++I+ DID+FKQ ND Sbjct: 328 ELNIARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYND 387 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199 +GH GD + Q+ + G + R GGEEF + A LA + Sbjct: 388 TYGHLQGDDCLR----QVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALKLAEKI 443 Query: 200 RKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R IE S I SS P ++IS+G+ K+ + + AD+ LY+AK GRNRV Sbjct: 444 RSSIEASCIEHSSSPLGRLSISSGVVAVNAAEKDGNTAALEEADRLLYLAKTKGRNRV 501 >gi|226356808|ref|YP_002786548.1| diguanylate-cyclase [Deinococcus deserti VCD115] gi|226318798|gb|ACO46794.1| putative diguanylate-cyclase [Deinococcus deserti VCD115] Length = 605 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q S D ++GL N ++ + +S++ DID+FK+ ND FGH GD Sbjct: 432 LRQQSIRDPMTGLFNRRYLEETMERELHRATRDQQSVSVLAVDIDHFKKFNDTFGHEAGD 491 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ + + F + R GGEEF + + ++ AN R+ I + + Sbjct: 492 AVLLAAAKTMQEYFRAEDIICRYGGEEFIIVLVNAPHEDILARANGFREKIAALTVKHNR 551 Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G+A H + +I +ADQALY+AK+ GRNRV Sbjct: 552 QMLGQVTVSIGVATYAEHGTDVRVLINQADQALYLAKQEGRNRV 595 >gi|222099520|ref|YP_002534088.1| Respons regulator [Thermotoga neapolitana DSM 4359] gi|221571910|gb|ACM22722.1| Respons regulator [Thermotoga neapolitana DSM 4359] Length = 452 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 72/156 (46%), Gaps = 4/156 (2%) Query: 104 SRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 S D L+ LLN A F+ E +++ DID FK+IND FGHP+GD+V+ + + Sbjct: 297 SETDSLTQLLNKRAIMKFLEEALRKREGVAVAMLDIDDFKKINDTFGHPIGDEVLKVVGE 356 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L GR GGEEF N + + I N +T+ Sbjct: 357 TLKRTVSNGK-AGRYGGEEFMIVFETGDRNLVESTMNGIMEKIRNFNWKSIFNVERKVTL 415 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+A + ++ AD+ LY AK+SG+NR V Sbjct: 416 SGGVAFSDENSSPAGLVEEADKKLYEAKRSGKNRFV 451 >gi|170738560|ref|YP_001767215.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46] gi|168192834|gb|ACA14781.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46] Length = 536 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 26/218 (11%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDC 108 F+ GLT + ++L+ L++V +++ SL L +++E + ++R D Sbjct: 53 FMLESGLTDLF--TFMLLMGLTMVGVTVRKSLKLR----RVMRERDAAAAHAEAVARHDA 106 Query: 109 LSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+GL N + ++ + ++ DID FK +ND +GH GD V+ ++D+L Sbjct: 107 LTGLANRRLLLEAIDRLMRSSATAVSGAVLLIDIDRFKPVNDLYGHAAGDAVLCAVADRL 166 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND----LRKIIENSQINISSGPSIH 217 + + RLGG+EFA +G + EA A LA + + +E +Q + G ++ Sbjct: 167 RSLAPSQGLAARLGGDEFALLVIGETGSEALARLAEQVIAAIARPVEWAQAELKVGATVG 226 Query: 218 ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253 IT+ +E + I++ AD A+Y KK GR Sbjct: 227 ITL-------ISREDVDAHGIMHAADLAMYQGKKEGRG 257 >gi|74317607|ref|YP_315347.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259] gi|74057102|gb|AAZ97542.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus denitrificans ATCC 25259] Length = 538 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 8/178 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 +K+L + ++S L R D ++ LN S +N SI D+D FK + Sbjct: 355 IKQLELELAQMSALVREDPMTHSLNRRGLDDEFAREASRAERFNTPFSIAVLDVDNFKAL 414 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GD+ + L + R+GGEEF + EA + L++ Sbjct: 415 NDRRGHNTGDEALIHLVKVAKEELRLSDHIARIGGEEFLIILPNTPVAEAVQIVTRLQRS 474 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + + + + IT SAG+AER E +I RAD A+Y AK SG+NRV D Sbjct: 475 L-TKKYFLDNNERVLITFSAGVAERRAGETQEALIARADSAMYEAKHSGKNRVCVAPD 531 >gi|26988144|ref|NP_743569.1| GGDEF domain-containing protein [Pseudomonas putida KT2440] gi|24982876|gb|AAN67033.1|AE016332_3 GGDEF domain protein [Pseudomonas putida KT2440] Length = 493 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ +D L+GL N +F + + L + D+D+FK +NDN GH GD+V+ Sbjct: 328 LATLDSLTGLYNRRSFDLLAAQALREARRDSSPLVALLIDLDHFKALNDNHGHLAGDEVL 387 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L + R GGEEF + ++A +A +R+ E + + P Sbjct: 388 RQFANVLQGSLRQSDILCRWGGEEFIVLLREAEGRQAIEVAEKIRRRTEQLTFSYDNQP- 446 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T S G++ + + ++ RAD+ALY AK++GRNRV Sbjct: 447 LRLTTSIGLSSLQPGDTLHALLTRADRALYRAKQAGRNRV 486 >gi|88812167|ref|ZP_01127419.1| GGDEF family protein [Nitrococcus mobilis Nb-231] gi|88790671|gb|EAR21786.1| GGDEF family protein [Nitrococcus mobilis Nb-231] Length = 300 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 24/198 (12%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVF 133 +L +++GS ++ + + I +L+ ID L+ + N F+ + Y L+++ Sbjct: 105 ILKFLTGSNIEASY--HEEIYRLTTIDGLTQVYNKYYFLKEMARVVGRSVRYERDLALIL 162 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DIDYFK IND++GH GD V+ ++ + R GGEEF A S+ A Sbjct: 163 CDIDYFKLINDSYGHLAGDHVLKQVAQHIKRHTHPDDIFARYGGEEFVALLPERSKSTAV 222 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA----------ERC----HKEPISTIIYR 239 ++A LRK +++ G SI +T+S G+A ER H +I Sbjct: 223 VVAESLRKHVDSEPFEF-DGVSIPVTLSMGVADLREARRALGERGGISEHDSSCFALIKL 281 Query: 240 ADQALYVAKKSGRNRVVC 257 AD LY AK+ GRN +V Sbjct: 282 ADDRLYWAKQIGRNTIVA 299 >gi|327538970|gb|EGF25608.1| diguanylate cyclase [Rhodopirellula baltica WH47] Length = 331 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 14/168 (8%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQINDNFGHP 149 YN +++ D L+G LN + ++ S KL +++ DID+FK +ND GH Sbjct: 167 YNALTR----DALTGALNKRFLMEAIDRELSRSTRAKLELAVIMLDIDHFKSVNDTHGHL 222 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD V+ ++ + T + R GGEEF + +A +A R I + Sbjct: 223 VGDDVLRTFGKRIQALCRTDDLLARYGGEEFCLLLAATGHHDAMEIAERCRATIAGTPFQ 282 Query: 210 ISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255 S GP + IT S G++ +P + ++ ADQ LY AK +GRN+V Sbjct: 283 TSIGP-LEITASFGVSVMDPDQPSTVKALLQDADQHLYDAKNAGRNQV 329 >gi|153954414|ref|YP_001395179.1| signal transduction protein [Clostridium kluyveri DSM 555] gi|219855004|ref|YP_002472126.1| hypothetical protein CKR_1661 [Clostridium kluyveri NBRC 12016] gi|146347295|gb|EDK33831.1| Predicted signal transduction protein containing GGDEF domain [Clostridium kluyveri DSM 555] gi|219568728|dbj|BAH06712.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 289 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 16/168 (9%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +SRID L+ L N I + + S+ D+D+FK IND +GH GD Sbjct: 125 LDNMSRIDPLTKLSNRRDLRQKFECEIKKVSTRPTSFSLAIGDVDFFKNINDTYGHGCGD 184 Query: 153 KVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +V+ ++ +F + + R GGEEF + + A + ++R II+N Sbjct: 185 EVLK----KIACIFKNNLRKEDVISRYGGEEFVIFLPETDLKYALSVIENIRSIIQNETF 240 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G H+TIS G+ H I RAD ALY AK GRNRVV Sbjct: 241 EYN-GEIFHMTISFGLVNFNHSISFIECIERADSALYEAKVRGRNRVV 287 >gi|94501570|ref|ZP_01308087.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Oceanobacter sp. RED65] gi|94426253|gb|EAT11244.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Oceanobacter sp. RED65] Length = 577 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 11/177 (6%) Query: 88 SILKELFISYNRISQ---LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 ++ KEL + +++Q + D L+GL N A+ Y +LS++ D+D Sbjct: 379 TMEKELEEAKEQLNQSQLKAMTDSLTGLPNRGAYDVYAQQEYERYKRYGGELSLIVCDVD 438 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK IND +GH GDKV+ +S Q+ + R GGEEF + +++A +A Sbjct: 439 KFKSINDTYGHQAGDKVLQLISRQVKKGTRETDLLARYGGEEFVVLLPETKQEDAVSVAE 498 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + + + S + G + ITIS G+A + AD ALY AK++GRN+ Sbjct: 499 KIIEAVATSPFHF-RGKRVQITISCGVASFKKGYRPEQVFDAADAALYRAKENGRNQ 554 >gi|15641388|ref|NP_231020.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|9655871|gb|AAF94534.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 521 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 76 ITISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY-NE 127 + ISLLL YI L+E + R ++L + D L+ + N F L +E Sbjct: 325 VIISLLLSYIMRMQLEEKQRLTDMIEERTAELRYLVEHDSLTNIYNRRFFSQHLCKMLDE 384 Query: 128 KLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 K S ++ FDID FKQIND++GH GD + + D + R GG+EFA + Sbjct: 385 KQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVKKELVESDIFARFGGDEFAILSS 444 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQAL 244 + E +RK++E + +++ + +TIS G + C + EP I+ D L Sbjct: 445 VTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIGASINCEYSEP--EILQSVDDQL 502 Query: 245 YVAKKSGRNRV 255 Y++K GRNRV Sbjct: 503 YLSKSKGRNRV 513 >gi|13472106|ref|NP_103673.1| hypothetical protein mll2297 [Mesorhizobium loti MAFF303099] gi|14022851|dbj|BAB49459.1| mll2297 [Mesorhizobium loti MAFF303099] Length = 697 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 83/168 (49%), Gaps = 20/168 (11%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK- 153 +LSR D L+GL N A L Y K + + D+D+FK+ ND +GH GD+ Sbjct: 262 RLSRTDPLTGLENRRAIDEKLRDYWSDWQKLGSKFAAILIDVDFFKKFNDCYGHQEGDRC 321 Query: 154 ---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 V LSD + G+ +GR GGEEF A + + A LA + + +EN I Sbjct: 322 LIHVANALSDLIKNYNGS---IGRYGGEEFIVLARMDKKDQVAELAEAICRTVENLAITH 378 Query: 210 --ISSGPSIHITISAGIA-ERCHK-EPISTIIYRADQALYVAKKSGRN 253 G SI +T S G A R + II+ AD+ALY+AK GRN Sbjct: 379 ELRRDGISI-VTASVGAAFTRTQAGAKLEKIIHEADRALYLAKAGGRN 425 >gi|83954114|ref|ZP_00962834.1| diguanylate cyclase, putative/response regulator [Sulfitobacter sp. NAS-14.1] gi|83841151|gb|EAP80321.1| diguanylate cyclase, putative/response regulator [Sulfitobacter sp. NAS-14.1] Length = 471 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 26/172 (15%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N +S + + L+++ DID+FK++ND FGH GD V+ + Sbjct: 296 DPLTGIYNRRHALSEVARLALRTRRKGIPLAVMLADIDHFKRVNDAFGHASGDAVLVETA 355 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218 +L R+GGEEF G +E EA +A + + + I +S IH Sbjct: 356 RRLKSCLRPLDVAARIGGEEFLLILPGITEAEATRMAKRMCEAYRTTPFTIPASAQPIHA 415 Query: 219 TISAGIAERCHKEPIST---------------IIYRADQALYVAKKSGRNRV 255 TIS G+ C +P ++ +I RADQALY AK GR+RV Sbjct: 416 TISIGL---CTAQPETSDAFPAPLDASAIAAELIDRADQALYSAKHRGRDRV 464 >gi|116692517|ref|YP_838050.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] gi|116650517|gb|ABK11157.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] Length = 516 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 12/168 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVG 151 I L+R D L+GL N + L + ++++ D+D FK IND FGH G Sbjct: 338 IRHLARHDALTGLPNRHELHAELKRMLARRPRLPSPAFAVMYLDLDGFKSINDRFGHQAG 397 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++++L R+GG+EF A ++ Q +ILA + + I ++ +S Sbjct: 398 DEVLTQVAERLGKTLPPGELAARIGGDEFIVAIDDTTMQACSILAARIIRQI-SAPYALS 456 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G ++ I IS GIA + H P +I +AD ALY AK +G+ + CF Sbjct: 457 IGETVCIGISIGIALDDGHGSP-DELIRQADSALYDAKSAGKG-IYCF 502 >gi|225686403|ref|YP_002734375.1| GGDEF domain-containing protein [Brucella melitensis ATCC 23457] gi|225642508|gb|ACO02421.1| GGDEF domain protein [Brucella melitensis ATCC 23457] Length = 237 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 23/229 (10%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97 IAT+I I+ G+ G++ V L +++ I++LLG S L+EL SY Sbjct: 18 IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMLLGVFWFSRLEELERSYR 73 Query: 98 ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148 N +++++ +D L+GLLN +FI + N+ +F D+DY KQIND +GH Sbjct: 74 TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 133 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204 P GD I ++ L + + R+GG+EF A G+ ++L++ LR ++ Sbjct: 134 PAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 193 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + N+ S +T+S G + ++ AD+ LY KKS R Sbjct: 194 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 237 >gi|119898940|ref|YP_934153.1| GGDEF family protein [Azoarcus sp. BH72] gi|119671353|emb|CAL95266.1| GGDEF family protein [Azoarcus sp. BH72] Length = 569 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 14/163 (8%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFF-----DIDYFKQINDNFGHPVGDKV 154 QL+R D L+GL N A L K S+V + DID FK+IND GH VGD V Sbjct: 396 QLARRDALTGLPNRLAANEQLTEEFLRMKRSLVPYAVLMADIDLFKRINDGHGHAVGDAV 455 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ + FV R+GGEEF + + AA++A +R +E ++ P Sbjct: 456 LRHVAGVIRSSLRITDFVARVGGEEFLVLLPNTDIEAAAVVAEKIRVAVEG-----AAAP 510 Query: 215 SI-HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255 + +T+S G+ P R AD LY AK+ GRNR+ Sbjct: 511 EVGQVTLSIGVGRAVSAHPSPDDAVRLADDGLYEAKRLGRNRI 553 >gi|118443736|ref|YP_877444.1| signal transduction protein [Clostridium novyi NT] gi|118134192|gb|ABK61236.1| signal transduction protein containing diguanilate cyclase/phosphodiesterase domain [Clostridium novyi NT] Length = 365 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 YN+I Q++ D L G+ N F + +++ +IV DID FK++ND +GH V Sbjct: 197 YNKIRQIAIRDPLIGIYNRKHFFNIVEEKIKKDKASKRFAIVMMDIDDFKKVNDKYGHQV 256 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209 GD+V+ +V V R GGEE SS+++ + N +RK I + I Sbjct: 257 GDEVLKETGKIIVDNLNKEDIVARYGGEEIIMYVSNFSSKEDVYNIVNGIRKKISENIIK 316 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 G + IT S GIA + ++++I AD LY+AKK+ +N V+ Sbjct: 317 Y-EGMKVSITASFGIAYYMEDGKSLNSVISVADNRLYIAKKANKNVVI 363 >gi|313499909|gb|ADR61275.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas putida BIRD-1] Length = 1098 Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 16/174 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I L+ D L+ L N + I+ L +N + +++F D+D+FK IND+ GHPVG Sbjct: 656 QIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVG 715 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQEAAILANDLRKIIEN 205 D V+ ++ +L V RLGG+EF G E++ LA+ LR+++ Sbjct: 716 DTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELL-- 773 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ G + +T S G+A H + ++ RAD ALY AK SGRN F Sbjct: 774 AEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLF 827 >gi|295103047|emb|CBL00591.1| diguanylate cyclase (GGDEF) domain [Faecalibacterium prausnitzii SL3/3] Length = 372 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 29/235 (12%) Query: 29 IYFSIFFSIFIATVIFIANI-----FLFYIGLTPFYGLEYIL---VENLSLVIISITISL 80 +Y++ + +ATV A L Y LT F G E ++ + L + + +T+ Sbjct: 144 MYYAAMLYLMVATVRTAAAFQNRSRTLIY-PLTLFLGAETVIQLALPELHVTWLCVTLLS 202 Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI-VFFDIDYF 139 +L YI S +++D L+GLLN +++++ + V FD+D F Sbjct: 203 VLYYIYCS------------EMWNQLDALTGLLNQNSYLNRTAEMRRSGGVLVVFDVDDF 250 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 KQIND +GH GD +A ++D + + + R+GG+EF L E+ A A L Sbjct: 251 KQINDRYGHLQGDVCLAEIADCIKKAYARCGYCYRIGGDEF--CVLLKDEESEARCAKTL 308 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + ++ + + P++ + +A E + T+ RAD+ALY AKK + R Sbjct: 309 QALLAERRKVFAILPTVSLGSAAF-----SGEDVVTVKARADRALYCAKKEQKAR 358 >gi|261253757|ref|ZP_05946330.1| pole remodelling regulatory diguanylate cyclase [Vibrio orientalis CIP 102891] gi|260937148|gb|EEX93137.1| pole remodelling regulatory diguanylate cyclase [Vibrio orientalis CIP 102891] Length = 404 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 7/156 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +L+ D L+GL N + S E +I DIDYFK++ND +GH GD + +++ Sbjct: 253 KLANQDALTGLWNRRFLFNQACSGCEHSNIAMLDIDYFKKVNDTYGHDGGDATLKMVANI 312 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L V F + V R GGEEF + ++ + + N +R+ +E + I G I +TIS Sbjct: 313 LKVYFPDDVVV-RFGGEEFCIQSCAPFDEFISRIEN-MRQRVEKTPIK-HDGQQIQVTIS 369 Query: 222 AGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256 G+ C+ ++ I AD LY AK +GRN+ + Sbjct: 370 IGV---CNLNTDLNDQIKIADDHLYAAKAAGRNQTI 402 >gi|190573501|ref|YP_001971346.1| putative transmembrane GGDEF family signalling protein [Stenotrophomonas maltophilia K279a] gi|190011423|emb|CAQ45041.1| putative transmembrane GGDEF family signalling protein [Stenotrophomonas maltophilia K279a] Length = 512 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 85/183 (46%), Gaps = 20/183 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 E R++ + D L+G+LN + L G LS+ F D+D FK+IND Sbjct: 317 EFEARAKRLADQAHRDALTGVLNRRQLEAVLEQEFLRAGRQGWPLSVAFIDLDDFKKIND 376 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILANDL 199 GH GD+V+ + +L V R GGEEF A +SE A +LAN Sbjct: 377 AHGHLTGDEVLRAFAGKLQGQLRHSDTVARFGGEEFVALLPNTSETVALDVIRRVLAN-- 434 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV 256 I+ + GP + +T SAG+A + E + ++ AD LY +K GRNRV+ Sbjct: 435 --IVATPMAELEGGP-LFVTFSAGVATQGGYERFADVQDLLRAADDVLYRSKNLGRNRVI 491 Query: 257 CFS 259 S Sbjct: 492 ARS 494 >gi|183179590|ref|ZP_02957801.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|183013001|gb|EDT88301.1| GGDEF family protein [Vibrio cholerae MZO-3] Length = 443 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 34/172 (19%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L +S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVNDVYGHSLGDDL 331 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KII 203 + SD+LV R GGEEF ++ ++A LA LR KI Sbjct: 332 LREFALVISREIRESDKLV----------RWGGEEFVVFCAQTTLEQAIELAERLRAKIA 381 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++S I+ + IT S GIA+ E I+ + RAD ALY AK+ GRNR+ Sbjct: 382 DHSWIHGGA-----ITCSLGIAQ-MGDERITETVSRADDALYRAKRLGRNRI 427 >gi|163761463|ref|ZP_02168536.1| diguanylate cyclase [Hoeflea phototrophica DFL-43] gi|162281307|gb|EDQ31605.1| diguanylate cyclase [Hoeflea phototrophica DFL-43] Length = 316 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 14/168 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +++ QLSR D L+G+ N + L ++ LS++ DID FK IND++GH Sbjct: 135 DQLDQLSRTDSLTGVSNRRELEAVLERLFKEADRSDQPLSLLMMDIDNFKLINDSYGHDA 194 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ L+ L V V RLGG+EF + A +LA+ + + S Sbjct: 195 GDQVLCALAKVLQSVCRETDVVARLGGDEFVCVLHDTDLSGAQVLADRIMAAVSKS---- 250 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 + P + T+S GI+ R S+ ++ AD+ALY AK GR+R Sbjct: 251 ADAPCAY-TVSIGISGRTRLFSASSGDVLKFADKALYDAKAGGRDRTA 297 >gi|148548982|ref|YP_001269084.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148513040|gb|ABQ79900.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida F1] Length = 1098 Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 16/174 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I L+ D L+ L N + I+ L +N + +++F D+D+FK IND+ GHPVG Sbjct: 656 QIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVG 715 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQEAAILANDLRKIIEN 205 D V+ ++ +L V RLGG+EF G E++ LA+ LR+++ Sbjct: 716 DTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELL-- 773 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ G + +T S G+A H + ++ RAD ALY AK SGRN F Sbjct: 774 AEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLF 827 >gi|26988709|ref|NP_744134.1| sensory box protein [Pseudomonas putida KT2440] gi|24983498|gb|AAN67598.1|AE016389_6 sensory box protein [Pseudomonas putida KT2440] Length = 1136 Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 16/174 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I L+ D L+ L N + I+ L +N + +++F D+D+FK IND+ GHPVG Sbjct: 694 QIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVG 753 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG------SSEQEAAILANDLRKIIEN 205 D V+ ++ +L V RLGG+EF G E++ LA+ LR+++ Sbjct: 754 DTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRELADTLRELL-- 811 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ G + +T S G+A H + ++ RAD ALY AK SGRN F Sbjct: 812 AEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLF 865 >gi|238786644|ref|ZP_04630445.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641] gi|238725012|gb|EEQ16651.1| Diguanylate cyclase [Yersinia frederiksenii ATCC 33641] Length = 404 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 87/173 (50%), Gaps = 15/173 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIND 144 K L + ++ + D L+GL N + F L NE +++F D D FK+IND Sbjct: 212 KHLTQENDSLAHRAAHDSLTGLANRAFFEGRLSRTLKDCKTNEHAAVLFLDGDRFKEIND 271 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKI 202 N+GH GD V+ ++D++ + V RLGG+EFA A + ++ I N I Sbjct: 272 NYGHAAGDVVLTTIADRIRALLRESDLVARLGGDEFAVLLAPIHDTDDVLTIADN----I 327 Query: 203 IEN--SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252 IE+ I + G I ++S GIA H + ++ RAD+A+Y AKK R Sbjct: 328 IESMTQPIVLVDGIEITTSLSIGIAVYPDHAQTPEELLQRADEAMYQAKKGFR 380 >gi|152968250|ref|YP_001364034.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Kineococcus radiotolerans SRS30216] gi|151362767|gb|ABS05770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Kineococcus radiotolerans SRS30216] Length = 708 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 30/171 (17%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F +L + ++++ D+D+FK +ND GHP GD+++ L+ Sbjct: 288 DPLTGLPNRRYFTQALQHALARSARSGQPVALLLLDVDHFKHVNDAHGHPAGDRLLTTLA 347 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE----NSQINISSGPS 215 +L V RLGG+EF +LA DL + E ++N+++G + Sbjct: 348 QRLRSSLRPSDTVCRLGGDEF------------VVLAEDLHHLDEALLLAERVNVAAGGT 395 Query: 216 -------IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +++S G++ ++ AD ALY AK+ GR+R F Sbjct: 396 YLLDHGEVRVSVSIGVSTAVGPGDPDALLSTADHALYEAKRRGRDRAEVFQ 446 >gi|323493241|ref|ZP_08098370.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546] gi|323312507|gb|EGA65642.1| diguanylate cyclase [Vibrio brasiliensis LMG 20546] Length = 344 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 7/161 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKV 154 +R++ L+ D L+G N + I++ +++ + DID FK IND++GH GD+V Sbjct: 176 DRLNSLAHQDALTGAQNRLSLITAFNQSSKQFEGFYLFTLDIDDFKAINDSYGHAAGDEV 235 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIENSQINISS 212 + + +L V GT + R+GGEEF E + L L+ + ++ I S Sbjct: 236 LRQVVLRLGRVVGTQ-HIYRMGGEEFVVVLTRQLVNENGLPELVGKLQDCVMDTPITFQS 294 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I +T SAG+ + +E + + +AD LY+AKK+G+ Sbjct: 295 -TQIRVTFSAGLEKFTRQEGLDRTLSKADNGLYLAKKAGKK 334 >gi|289666115|ref|ZP_06487696.1| GGDEF family protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 944 Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 10/172 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 +EL + +S + D L+GLLN + +++L L++V D+D+FK +N Sbjct: 763 RELEAARAELSLKATHDELTGLLNRAGILAALREMLLHAARSGRPLAVVLIDLDHFKLVN 822 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD V+A + ++ + +GR GGEE A G + L R I Sbjct: 823 DQHGHLAGDAVLAGVGRRMDTLVRGDDRIGRYGGEELLALLPGLNLDATHRLEALHRDIC 882 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I+ G +H+T S G+A E + ++ RAD ALY AK++GRNR+ Sbjct: 883 GDYPID---GSWLHVTCSIGVAWFQPGETLEQLLARADAALYSAKRNGRNRI 931 >gi|167032524|ref|YP_001667755.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166859012|gb|ABY97419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 1098 Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 16/174 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I L+ D L+ L N + I+ L +N + +++F D+D+FK IND+ GHPVG Sbjct: 656 QIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVG 715 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS------EQEAAILANDLRKIIEN 205 D V+ ++ +L V RLGG+EF G E++ LA+ LR+++ Sbjct: 716 DTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSRELVEEKVRELADTLRELL-- 773 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ G + +T S G+A H + ++ RAD ALY AK SGRN F Sbjct: 774 AEPMSLDGQRLQVTPSIGVALIPDHGATPADLLKRADIALYRAKDSGRNTTQLF 827 >gi|170738234|ref|YP_001779494.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia MC0-3] gi|169820422|gb|ACA95004.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia cenocepacia MC0-3] Length = 516 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 12/168 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVG 151 I L+R D L+GL N + L + +I++ D+D FK IND FGH G Sbjct: 338 IRHLARHDSLTGLPNRHELHAELKRMLARRPRLPSPAFAIMYLDLDGFKSINDRFGHQAG 397 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++++L R+GG+EF A ++ Q +ILA + + I ++ +S Sbjct: 398 DEVLTQVAERLGKTLPPGELAARIGGDEFIVAIDDTTMQACSILAARIIRQI-SAPYALS 456 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G ++ I IS GIA + H P +I +AD ALY AK +G+ + CF Sbjct: 457 IGETVCIGISIGIALDDGHGSP-DELIRQADSALYDAKSAGKG-IYCF 502 >gi|89094788|ref|ZP_01167722.1| GGDEF domain protein [Oceanospirillum sp. MED92] gi|89080953|gb|EAR60191.1| GGDEF domain protein [Oceanospirillum sp. MED92] Length = 365 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 110/242 (45%), Gaps = 37/242 (15%) Query: 48 IFLFYIGLTPFYGLEYILVENL--SLVIISITISLLLGYISGSILKELFI-----SYNR- 99 IFLF I GL + L E L + I L+L +++ + L + SY R Sbjct: 135 IFLFGIS-----GLLFFLDETLLAATYDTDFKIRLILSFLTVTFLSSFYEYSREESYQRA 189 Query: 100 ------ISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNF 146 QL+++D L+ L N + + E ++++ DID+FK INDN+ Sbjct: 190 LEISQEFEQLAKVDPLTKLSNRRDALEKIEYEFHRMERTQEPVTVLLCDIDHFKAINDNY 249 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD V+ LS + V R GGEEF + A+I A L + I Sbjct: 250 GHDAGDLVLVSLSRLFELQIRAQDTVSRWGGEEFLFVLPQTDLINASIFAEKLHRAI--- 306 Query: 207 QINIS--SGPSIHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRVVCFSDI 261 ++N + G I T S G+ C +P ++I + +AD+ALY AK +GRN + D Sbjct: 307 RLNTAFYQGQVIQCTTSIGM---CQLDPGTSIKESLRKADEALYQAKDAGRNTTMPQVDR 363 Query: 262 EN 263 N Sbjct: 364 TN 365 >gi|326391753|ref|ZP_08213275.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Thermoanaerobacter ethanolicus JW 200] gi|325992217|gb|EGD50687.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Thermoanaerobacter ethanolicus JW 200] Length = 676 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 12/164 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ N F+ L E++ S++ FD+D+FK++ND FGH GD V+ ++ Sbjct: 515 DPLTNTYNRRFFMQMLEQEIERVKRNRRPFSLIMFDLDHFKKVNDRFGHAAGDMVLKSVA 574 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D + R GGEEF +S A LA +LRK I ++ +T Sbjct: 575 DTVKERIRKTDCFARWGGEEFIILLPETSLNNAVDLAEELRKQISRMELQGIGD----VT 630 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDIE 262 S G+ E + I T++ R D LY AK +GRN V C DIE Sbjct: 631 ASFGVTEYRDTDTIDTVLIRVDNMLYEAKGAGRNCVKSCKFDIE 674 >gi|229524675|ref|ZP_04414080.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] gi|229338256|gb|EEO03273.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426] Length = 312 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS + S+ID L+ L N F S + L ++ FDID+FKQIND +GHP GD Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L R GGEEF LA ++R +E+ + + Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVVGLAENIRGYVESHTL-MWQ 264 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+SAG A H +++ ADQAL AK+ GRNRV+ Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309 >gi|227884018|ref|ZP_04001823.1| diguanylate cyclase [Escherichia coli 83972] gi|301047387|ref|ZP_07194469.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1] gi|227838770|gb|EEJ49236.1| diguanylate cyclase [Escherichia coli 83972] gi|300300731|gb|EFJ57116.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1] gi|315291128|gb|EFU50491.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1] Length = 455 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI Sbjct: 285 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 340 Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212 +V + G + R+GGEEF + A LA +R+ +E N + I Sbjct: 341 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ 400 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 401 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441 >gi|218515981|ref|ZP_03512821.1| putative sensory box/GGDEF family protein [Rhizobium etli 8C-3] Length = 240 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 14/177 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 S + ++ D L+G+LN + E+ ++++ FD+D+FK++ND FGH Sbjct: 31 SERHLRTMTLTDSLTGVLNRRGLLGYFEPSQERAHGEQRQVAVILFDLDHFKRVNDRFGH 90 Query: 149 PVGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD V IAF + G GR+GGEEFAA A + + EA +A +R E + Sbjct: 91 QAGDAVLIAFARMARQYIPGN--IFGRMGGEEFAAFAAVADQMEAEAIAEAIR--TEFCR 146 Query: 208 INISSGPSI-HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +++G +I +T+S GIA + I +I AD+ALY AK +GRN V F + E Sbjct: 147 LPVATGEAIVPVTVSIGIALASSIDANIDKLISAADRALYAAKAAGRNCTVTFGETE 203 >gi|158424389|ref|YP_001525681.1| hypothetical protein AZC_2765 [Azorhizobium caulinodans ORS 571] gi|158331278|dbj|BAF88763.1| protein of unknown function [Azorhizobium caulinodans ORS 571] Length = 309 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 11/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ ID L+ + N F+ + + LS++ DID+FK +ND GH +GD Sbjct: 135 LRRLATIDPLTEIFNRRHFMEVARQAFAEAERSHAPLSLLTLDIDHFKIVNDTHGHGIGD 194 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI ++ + + R+GGEEFA G++ QEA A L + + + + Sbjct: 195 EVIRAVARRCGQTLRPKDVLARMGGEEFAILMPGTTAQEACAQAWALFDGVTSEPLVLPE 254 Query: 213 GPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256 + ++IS G A+ C + + + RAD+ALY AK+SGR RVV Sbjct: 255 L-QLRVSISVGGAQ-CLPDDSSLDATLTRADRALYAAKRSGRGRVV 298 >gi|152990054|ref|YP_001355776.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] gi|151421915|dbj|BAF69419.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] Length = 627 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 7/163 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 + + S +D L+ + N + L S+ ++ I+ D+D+FK+IND +GH GD ++ Sbjct: 213 KTKKESFLDPLTQIYNRKFLRTFLTSFQPDRYQILMLDVDHFKKINDVYGHKAGDFILQE 272 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE--AAILANDLRKIIENSQINISSGPS 215 +++ + ++ R GGEEF ++ A +AN +RKIIE I + Sbjct: 273 VANLMKKNIREEDYLIRYGGEEFLLFIHRENKNSNIAIDIANRIRKIIEIKDF-IYNNHH 331 Query: 216 IHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I ITIS G+ K PI I Y AD+ LY+AK+ GRN+V+ Sbjct: 332 IKITISVGVNLHPEHFKNPIEAIKY-ADEMLYIAKRQGRNQVI 373 >gi|95930642|ref|ZP_01313376.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95133294|gb|EAT14959.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 475 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS+V DID+FK++ND +GH VGD+V+ ++ V R GGEEF ++ Sbjct: 344 LSVVMMDIDHFKKVNDTYGHHVGDQVLMEVAQTCRSHCRESDLVSRFGGEEFLILLPSTN 403 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 A A +R+ IE+ + G ++ +T S G+++ + I ++ RAD ALY AK Sbjct: 404 LNGAQTHAEKIRQAIEDLSFPTAEG-NVSVTASFGVSQWQGETKIDRVVSRADAALYQAK 462 Query: 249 KSGRN 253 GRN Sbjct: 463 HDGRN 467 >gi|300311572|ref|YP_003775664.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300074357|gb|ADJ63756.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 395 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 16/183 (8%) Query: 85 ISGSIL---KELFISYNRI----SQLSRIDCLSGLLNHSAFISS----LGSYNEK---LS 130 +SGS+L + I + R+ +L+ D L+G LN + L E+ L+ Sbjct: 205 LSGSLLFSVSLMMIYFERLLADRQRLATEDQLTGALNRRELVRCGELLLARAVERKSVLA 264 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + F D+D+FKQIND GH GD+V+A + L +GR GGEEF A G Sbjct: 265 LAFIDVDHFKQINDRHGHLAGDRVLAGIGATLAQSCRPGDVLGRYGGEEFCAVFPGVDHD 324 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +A + L + + + G + I++ + + ++ +++ AD ALY AK Sbjct: 325 QACQIGQRLLESVRTQRFE--HGHPVTISVGLAVLQPGNQRSWDELVHEADLALYRAKNE 382 Query: 251 GRN 253 GRN Sbjct: 383 GRN 385 >gi|296135678|ref|YP_003642920.1| diguanylate cyclase [Thiomonas intermedia K12] gi|295795800|gb|ADG30590.1| diguanylate cyclase [Thiomonas intermedia K12] Length = 325 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 18/197 (9%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130 I L L + G E+ + R +Q D L+GL +A L S Sbjct: 138 IDLGLDTLQGFADLEVVFAARRAAQ----DPLTGLPGRAALQQRLQGEQSLVLRQGRMCS 193 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 +V DID+FK IND GH GD+V+A + L V R GGEEF G++ Sbjct: 194 VVMLDIDHFKSINDQHGHQAGDRVLAAFARLLRGALRPYDGVYRYGGEEFVLVLPGATVA 253 Query: 191 EAAILANDLRK-IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +A + + +R+ I+E + I +G +HI SAG+A ++ I+ + AD ALY AK Sbjct: 254 QAVQIIDRMRQTIVERPLVQIQTG-GLHIRFSAGVAA-LNERAIAQTLRCADAALYHAKA 311 Query: 250 SGRNRVVCFSDIENNTC 266 GR++V +E C Sbjct: 312 EGRDQV----RLERGHC 324 >gi|118588839|ref|ZP_01546247.1| hypothetical protein SIAM614_19074 [Stappia aggregata IAM 12614] gi|118438825|gb|EAV45458.1| hypothetical protein SIAM614_19074 [Stappia aggregata IAM 12614] Length = 419 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 13/168 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149 Y+++ + S D L+G L+ S + K LS++ DID+FKQ+ND GH Sbjct: 249 YHKLLEASIRDHLTGALHRSQYDQKAPKILAKNIEEKRPLSLLVIDIDHFKQVNDRHGHQ 308 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQI 208 GD+++ ++ L T + R+GGEEF + A LA LRK IE S+I Sbjct: 309 AGDEILKTVARLLADNLRTDDHLYRVGGEEFVLLCEKLPVEGATTLAERLRKTIERFSKI 368 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255 + +T+S G+A ++R AD LY AKK GRNRV Sbjct: 369 YLPE----KVTVSIGLASAPQDGVTMEALFRQADLRLYEAKKQGRNRV 412 >gi|111022717|ref|YP_705689.1| hypothetical protein RHA1_ro05753 [Rhodococcus jostii RHA1] gi|110822247|gb|ABG97531.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 614 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 18/192 (9%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIV 132 I+ LL + I+ E + Y+ + D L+GL N A L S ++I+ Sbjct: 163 IAALLAQVQARIVVEEQLRYS-----ADHDSLTGLSNRRALYHHLDTRLAESEAGPVAIL 217 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQE 191 F D+D K +ND FGH GD I+ ++D+L T V RLGG+EF GS +E Sbjct: 218 FLDLDRLKPLNDFFGHGAGDGFISTIADRLRSTSQTDDLVSRLGGDEFVLVLGGSVGLEE 277 Query: 192 AAILANDLRKIIENSQINISS---GPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 A + A +R ++ ++ + S+ I ++ GI K S+++ +ADQA+ VAK Sbjct: 278 AEVRAQHIRDVV-TERVRLGREVVSRSVSIGVAVGIP---GKATTSSLLSQADQAVMVAK 333 Query: 249 KSGRNRVVCFSD 260 G N + F+D Sbjct: 334 TKGGNAISVFTD 345 >gi|259419193|ref|ZP_05743110.1| diguanylate cyclase [Silicibacter sp. TrichCH4B] gi|259345415|gb|EEW57269.1| diguanylate cyclase [Silicibacter sp. TrichCH4B] Length = 313 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 15/157 (9%) Query: 106 IDCLSGLLN--HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD----KVIAFLS 159 +D L+G N H A +S K +++ FD+DYFK +ND FGHP GD V A + Sbjct: 166 LDPLTGCFNRRHLARVSETQDL-RKAALILFDLDYFKSVNDTFGHPTGDFVLRSVTALVR 224 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 QL G F R+GGEEF L + LA R+ ++ S+I + +T Sbjct: 225 QQLSD--GDLFF--RIGGEEFLVLRLNPEKGTTRALAEQCRQALDTSRILATR----RVT 276 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + A+ + + ++ +AD AL AK++GRNRVV Sbjct: 277 ATFSCADFDGRAEMEPVLGQADVALLKAKRAGRNRVV 313 >gi|260551034|ref|ZP_05825239.1| response regulator [Acinetobacter sp. RUH2624] gi|260405982|gb|EEW99469.1| response regulator [Acinetobacter sp. RUH2624] Length = 473 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L F+ S+ EK+ + D+D+FK++ND++GH +GD+ + Sbjct: 312 DELTSSLTRRQFLQSVRLLQEKVQKEHKTSAFFMLDVDHFKKVNDSYGHLIGDRALQTCV 371 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + +GR GGEEFA ++++ A LA +R I I + I + Sbjct: 372 TTIQNILHPHDLLGRFGGEEFAIFIPDTTKEAAFELAERIRIKISQQPIYVYGKLPIFVQ 431 Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S GI+ + I ++ AD ALY AK+ GRNRV Sbjct: 432 VSIGISLYSPNYHRSIESLFKEADDALYQAKRQGRNRV 469 >gi|238783668|ref|ZP_04627688.1| hypothetical protein yberc0001_31860 [Yersinia bercovieri ATCC 43970] gi|238715381|gb|EEQ07373.1| hypothetical protein yberc0001_31860 [Yersinia bercovieri ATCC 43970] Length = 431 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 6/133 (4%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 Y S++ D+D+FK IND GH GD+V+ L+ L + V R GGEEF Sbjct: 302 YGHCFSLILLDVDHFKSINDQLGHNKGDEVLILLARTLESIIRESDSVFRWGGEEFTILL 361 Query: 185 LGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 + + A LA +R+ I+ Q N+ +T+S G+A+ E ++ R D+A Sbjct: 362 PLTHLEGALQLAESIRETIQMICQPNLP-----QLTVSIGVAQHQSGEDTDSLFKRMDEA 416 Query: 244 LYVAKKSGRNRVV 256 LY AK SGRNRV+ Sbjct: 417 LYRAKASGRNRVL 429 >gi|242278703|ref|YP_002990832.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens DSM 2638] gi|242121597|gb|ACS79293.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens DSM 2638] Length = 383 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 7/172 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143 ++L S R LS D L+GL N + + LSI+ D+D FK N Sbjct: 207 QKLKESEERFKNLSITDQLTGLFNRRHMLDVAEKEIFKSRNTGHPLSIMLMDVDDFKMFN 266 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD ++ + + R GGEEF ++ EA +A ++R + Sbjct: 267 DTYGHAAGDDILEAIGKIIKNNIRATDKAFRYGGEEFMVILPETNGLEAIKVAENIRIAL 326 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + G IH TIS G+AE + E + +I RAD +Y K G+NRV Sbjct: 327 AEYEYHPKEGSPIHKTISIGVAEFTNDESLEKVIKRADDNMYRCKIKGKNRV 378 >gi|190894935|ref|YP_001985228.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190700596|gb|ACE94678.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 628 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L +S ++ L+ D L+G++N AF + N S++ DID FK ND Sbjct: 440 LRLSAEQLKNLAETDGLTGIVNRRAFDEVFARETAGNARRNTPFSLLMVDIDRFKAYNDT 499 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GHP GD+ + +S L P V R GGEEF +S + A I+A + + Sbjct: 500 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLA 559 Query: 205 NSQINISSGPSIHITISAGIAERCH-----KEPISTIIYRADQALYVAKKSGRNRVVC 257 I S +T S GI+ C + + ++ AD ALY AK GRNR++ Sbjct: 560 QENIVHSGSEFGRVTASIGIS--CATGAMLRASPNRLLAEADTALYEAKTQGRNRILA 615 >gi|310641381|ref|YP_003946139.1| diguanylate cyclase [Paenibacillus polymyxa SC2] gi|309246331|gb|ADO55898.1| Diguanylate cyclase [Paenibacillus polymyxa SC2] Length = 393 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 13/168 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154 RI + S D L+GL N F L Y + ++S++F DID FK++ND GH D+V Sbjct: 226 QRIYRSSITDGLTGLYNRKYFSGRLRRYMDQGIRVSVIFCDIDNFKKLNDTQGHARADEV 285 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ + GR GGEE A + + A + ++ E S + IS G Sbjct: 286 LKQVAQIMEEELDEIGLTGRYGGEELVAMVVDRRAKVAQVAERIRERVAEESIVTISVG- 344 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 H T I P ++ +ADQA+Y++K +G+N+V + E Sbjct: 345 --HSTAKKEI------NP-DELVKQADQAMYISKTTGKNKVTAYKAAE 383 >gi|319761584|ref|YP_004125521.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|330823452|ref|YP_004386755.1| PAS/PAC sensor-containing diguanylate cyclase [Alicycliphilus denitrificans K601] gi|317116145|gb|ADU98633.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|329308824|gb|AEB83239.1| diguanylate cyclase with PAS/PAC sensor [Alicycliphilus denitrificans K601] Length = 431 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 25/180 (13%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 + EL + + + D L+GL N +F G + LS++ DID+FK+ Sbjct: 253 ITELHELKEELRRQASTDGLTGLANRRSFCERAGHEFARSRRHGTPLSLIAIDIDHFKRF 312 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND++GHP+GD+V+ + + R GGEEF + +D R+I Sbjct: 313 NDSYGHPLGDRVLCAFAACCQSMLREADLCARTGGEEFCILLPDTG-------LDDARRI 365 Query: 203 IENSQINISSG--------PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 E +I +S+G P + I+ S G+A + T+ RAD+ALY AK+ GR+ Sbjct: 366 AE--RIRVSAGSLCVDGQSPQLRISASFGVASLESGDQAFDTLFSRADRALYCAKQQGRD 423 >gi|317152325|ref|YP_004120373.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316942576|gb|ADU61627.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 478 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 16/161 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISS--LGSYNEKL-----SIVFFDIDYFKQINDNFGHPVG 151 R+ ++++ D L+G N A L +Y + S V D+D FK IND GH G Sbjct: 315 RLERMAKTDPLTGAANRRALEERFHLAAYKARRNATPCSAVIIDLDDFKAINDTLGHMEG 374 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D VI ++D + + R GG+EF + S+ Q+A+I+ +R ++ Sbjct: 375 DAVIKTVADTITRTLRPTDLLARWGGDEF-VILMESTAQDASIVTERIR-------AHMP 426 Query: 212 SGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 GP I+ S GIA+ + + ++ +RADQA+Y AK G Sbjct: 427 PGPLGRTISFSCGIAQFTADDDLKSLTHRADQAMYAAKAKG 467 >gi|213968212|ref|ZP_03396357.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] gi|301383782|ref|ZP_07232200.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato Max13] gi|302060775|ref|ZP_07252316.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato K40] gi|302131874|ref|ZP_07257864.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927192|gb|EEB60742.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] Length = 730 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 21/209 (10%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---- 115 G +L ++ + ++ T LL+ + + +L + +I L+ D L+GL N Sbjct: 246 GAPLVLDVSVEFITLNNTACLLM---NARDIGQLKSAQAQIQHLAYHDPLTGLPNRALLM 302 Query: 116 ---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L V Sbjct: 303 DRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTV 362 Query: 173 GRLGGEEFAA------AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225 RLGG+EF +L + +LA++LR ++ ++ G + +T S GI Sbjct: 363 ARLGGDEFVVLICGLDGSLEHVTHQVRVLADNLRVLL--AEPMFLDGHRLQVTPSVGIVL 420 Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRN 253 P + ++ RAD ALY AK SGRN Sbjct: 421 IPDDGLTP-ADLLKRADIALYRAKDSGRN 448 >gi|229915872|ref|YP_002884518.1| diguanylate cyclase [Exiguobacterium sp. AT1b] gi|229467301|gb|ACQ69073.1| diguanylate cyclase [Exiguobacterium sp. AT1b] Length = 496 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 14/163 (8%) Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G N S FIS L E ++ DID+FKQ+ND FGH GD V+ + Sbjct: 220 VDELTGAFNRKYLKATFSRFISRLERSGESFAVALLDIDHFKQLNDTFGHSYGDDVLHRV 279 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH- 217 S+++ + + R GGEEF L S++ AI+ + L ++ ++I P H Sbjct: 280 SEEIRHAIRSSDELIRYGGEEF-LILLNVSDR--AIVESVLERV--RTRIEEMEFPYDHQ 334 Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 +T+S G C + AD+ALY AK+ GRNRVV ++ Sbjct: 335 VTVSIGYTRVCQTGYTLGEWCAYADEALYKAKRDGRNRVVRYT 377 >gi|169796659|ref|YP_001714452.1| hypothetical protein ABAYE2642 [Acinetobacter baumannii AYE] gi|169149586|emb|CAM87475.1| hypothetical protein; putative GGDEF domain [Acinetobacter baumannii AYE] Length = 275 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 11/203 (5%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKE-LFISYNRISQLSRIDCLSGLLNHSAFISSL 122 IL ++S ++IS SL L I ++ L I + + LS+ D L+ + N F Sbjct: 62 ILGFSISSMLISRERSLFLNNQLAEINEQILRIEASELLHLSQQDALTQISNRRTFDEMF 121 Query: 123 GSY-----NEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 + EK L+++F DID+FK ND +GH +GDKVI+ ++ + FV R Sbjct: 122 DFFYYRANQEKRPLAVLFIDIDFFKNYNDFYGHQMGDKVISSIAAAIKNSIRHVDFVARY 181 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAG--IAERCHKEP 232 GGEEF + Q A +A ++ K IE I + +S S ++TIS G + K Sbjct: 182 GGEEFVVLLPETPAQGAYSVAANIYKAIERQAIPHAASLVSKYVTISLGFTVYTGGLKMG 241 Query: 233 ISTIIYRADQALYVAKKSGRNRV 255 +I+ ADQALY AK+ GRN++ Sbjct: 242 QDRLIHAADQALYRAKQLGRNQI 264 >gi|167644871|ref|YP_001682534.1| diguanylate cyclase [Caulobacter sp. K31] gi|167347301|gb|ABZ70036.1| diguanylate cyclase [Caulobacter sp. K31] Length = 239 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 13/191 (6%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS----- 124 +L + + I L G ++ L N L+ +D L+ +LN AF+ + Sbjct: 54 ALKTLMVEIDDLRGEVA-----RLKFKLNEAQGLADLDVLAPVLNRRAFLREIKRVAAFA 108 Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 Y S+VFFD+D FK +ND FGH GD+ + ++ +L VGR+GG+EFA Sbjct: 109 QRYGSPASLVFFDLDGFKAVNDRFGHAAGDEALKAVAQRLQAHVRESDVVGRIGGDEFAV 168 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 + + +Q A A L + + + + + S+ + IS G+ E + AD Sbjct: 169 LLVQADQQTAVSKAETLAQAVRDMPVQVGEW-SVPLRISWGVREIEPGADPEVALAEADA 227 Query: 243 ALYVAKKSGRN 253 A+++ K++ + Sbjct: 228 AMFLKKRARKE 238 >gi|218531235|ref|YP_002422051.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] gi|254562231|ref|YP_003069326.1| diguanylate cyclase [Methylobacterium extorquens DM4] gi|218523538|gb|ACK84123.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] gi|254269509|emb|CAX25475.1| putative diguanylate cyclase (GGDEF motif) [Methylobacterium extorquens DM4] Length = 352 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 18/185 (9%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDI 136 +S + + +L + + D L+GL N F + S++ DI Sbjct: 163 VSAAHIAKLHKDLVETQRAAATDALTGLANRKTFDGFLRDSIARTRSDSGSTFSLLMLDI 222 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEA 192 D+FK +ND GH GD+V+ + L R GGEEFA A +G+ A Sbjct: 223 DHFKGLNDRHGHRFGDQVLRLVGRLLSAKTTDRDLAARYGGEEFAIVLGEAGIGAGVALA 282 Query: 193 AILANDLR--KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 + LR ++++ ++ + +TISAG+A+ E +I RAD+ALY AK++ Sbjct: 283 QEICGRLRGQRLVKRGTGDVVA----QVTISAGVAQYRPGEAARDVIERADRALYEAKRT 338 Query: 251 GRNRV 255 GR+RV Sbjct: 339 GRDRV 343 >gi|56416693|ref|YP_153767.1| response regulator PleD [Anaplasma marginale str. St. Maries] gi|222475058|ref|YP_002563473.1| Putative two-component response regulator with GGDEF and receiver domains [Anaplasma marginale str. Florida] gi|255003037|ref|ZP_05278001.1| response regulator PleD [Anaplasma marginale str. Puerto Rico] gi|255004160|ref|ZP_05278961.1| response regulator PleD [Anaplasma marginale str. Virginia] gi|56387925|gb|AAV86512.1| hypothetical protein AM475 [Anaplasma marginale str. St. Maries] gi|222419194|gb|ACM49217.1| Putative two-component response regulator with GGDEF and receiver domains [Anaplasma marginale str. Florida] Length = 455 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 9/162 (5%) Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++S D L+G N F ++ + LS++ D+D+FK++ND FGH VGD+ Sbjct: 291 AEMSITDPLTGCYNRRYFDMHFQNIVNEARDKGKDLSVMIIDVDHFKRVNDTFGHTVGDE 350 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ L ++ + R GGEEF + +A A LR+ I N S G Sbjct: 351 LLQQLRKRIFDNIRISDLLARFGGEEFVIILPETGIDQAVTAAERLRQKIAEEPFNTSGG 410 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ T+S G+AE E + RAD+ LY AK++ RN V Sbjct: 411 -ALEKTVSIGVAEFRPSEEAKDFLNRADKCLYSAKET-RNAV 450 >gi|83311044|ref|YP_421308.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945885|dbj|BAE50749.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 317 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 13/164 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + S D L+GL N S Y E +S++ D+D+FK +ND GH VGD Sbjct: 157 LEKASITDALTGLFNRRRLDESFAHELDRAQRYAEPVSLIISDVDHFKSVNDIHGHHVGD 216 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ L VGR GGEEF + A LA LR I ++Q Sbjct: 217 EVLQAMAGLLRHGVRALDVVGRWGGEEFLIICPNTDLDGATALAEKLRAAIASAQF---- 272 Query: 213 GPSIHITISA-GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P I + ++ G+A+ E + RAD ALY AK +GRNR+ Sbjct: 273 -PGIGTSSASFGVAQYQDGESFKDTVARADTALYRAKVNGRNRI 315 >gi|254229585|ref|ZP_04922997.1| fog: ggdef domain containing protein [Vibrio sp. Ex25] gi|262394511|ref|YP_003286365.1| GGDEF family protein [Vibrio sp. Ex25] gi|151937868|gb|EDN56714.1| fog: ggdef domain containing protein [Vibrio sp. Ex25] gi|262338105|gb|ACY51900.1| GGDEF family protein [Vibrio sp. Ex25] Length = 445 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 26/169 (15%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G +N A L + ++ SI++ D+D FK++ND FGH +GD Sbjct: 275 AELAHRDALTGAMNRHAVQHWLEQQSRQVRWGHSTFSILYMDLDKFKKVNDKFGHQMGDD 334 Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 ++ + V+V + ++ R GGEEF ++ +A + +RK N Sbjct: 335 ILR----EFVMVVASSIYPDDRLVRWGGEEFVVFCPDTNIDQAVKKSEMIRK-------N 383 Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + S +H +T S G+A+ E +S + RAD+ LY AK++GRNRV Sbjct: 384 VESHLWVHGESLTCSIGVAQ-MQNERVSETMARADEVLYQAKRNGRNRV 431 >gi|46201931|ref|ZP_00054098.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 290 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 13/171 (7%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R S LS D ++GL N ++++ L+++ D+D+FK +ND +GH G Sbjct: 115 RESSLS--DPMTGLNNRRFLEEYVDTLVANVHRRKSALTVMMLDLDHFKMVNDTYGHDAG 172 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ LS L V R GGEEF + + EA +A +R ++E + + Sbjct: 173 DAVLKALSKVLRQAVRASDMVIRFGGEEFLIVLVDTPCTEADQVAEKIRAMVE--ALTVQ 230 Query: 212 SGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +G +I TIS G+++ + + AD ALY AK++GRNRVV F++ Sbjct: 231 AGTVTIRKTISIGLSDFPTDSDTFWQAVKFADVALYQAKENGRNRVVRFNE 281 >gi|170720732|ref|YP_001748420.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619] gi|169758735|gb|ACA72051.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida W619] Length = 1098 Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 16/174 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I L+ D L+ L N + + L +N + +++F D+D+FK IND+ GHPVG Sbjct: 656 QIRHLAYHDPLTNLPNRALLMDRLSQQIALLRRHNLRGALLFLDLDHFKHINDSLGHPVG 715 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI------LANDLRKIIEN 205 D V+ ++ +L V RLGG+EF G A+ LA+ LR+++ Sbjct: 716 DTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREAVENKVRELADTLRELL-- 773 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ G + +T S G+A H + ++ RAD ALY AK SGRN F Sbjct: 774 AEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTTQLF 827 >gi|221069372|ref|ZP_03545477.1| diguanylate cyclase [Comamonas testosteroni KF-1] gi|220714395|gb|EED69763.1| diguanylate cyclase [Comamonas testosteroni KF-1] Length = 473 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 4/133 (3%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + +I+ D+D+FKQIND+FGH GD+++ L V VGR+GGEEFA A Sbjct: 337 GQPFAILMLDLDHFKQINDSFGHAGGDQLLRSFCQTLTQVLRAQDIVGRMGGEEFAVALP 396 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHK-EPISTIIYRADQ 242 + A +A + + I ++ + + T+S G+ +R + + ++ ADQ Sbjct: 397 KVNAAAAQEIAKRINRAIRELRVPMDDQ-LMSATVSIGLIHTDRLQAHQSLDLLLQDADQ 455 Query: 243 ALYVAKKSGRNRV 255 ALY AK +GR+RV Sbjct: 456 ALYEAKAAGRDRV 468 >gi|187919786|ref|YP_001888817.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] gi|187718224|gb|ACD19447.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] Length = 503 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 12/169 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 +++ L+R D L+GL N F +L ++ LS++F DID FK ND +GH Sbjct: 333 SKLQHLARTDALTGLSNRGTFDDTLQKEWQRANRSGRPLSLLFIDIDQFKAYNDYYGHQA 392 Query: 151 GDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ ++ + + V + V R GGEEF + A +A +R+ + + + Sbjct: 393 GDEVLRAVAQCVGLCVLRSADQVARYGGEEFVVTLPDTDATGATNVAETVRRAVFDLNLE 452 Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G+ ER ++ +T++ AD ALY AK +GRNRV Sbjct: 453 HVQSRYGRVTVSIGLVTSDERVARDG-ATLVNMADSALYEAKSTGRNRV 500 >gi|91203573|emb|CAJ71226.1| conserved hypothetical response regulator protein [Candidatus Kuenenia stuttgartiensis] Length = 685 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 2/133 (1%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 K +++F D+D FK +ND GH GD+++ LS L + RLGG+EFA + Sbjct: 293 KGALLFLDLDNFKYVNDTLGHQHGDELLIKLSCILKERLRQTDILARLGGDEFAVILPNT 352 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYV 246 E++A ++ L ++ N + + S +HIT+S GIA H + T++ AD A+Y Sbjct: 353 EEEQAQHISKQLVELTRNC-LALDSLNPLHITVSIGIAMFPAHGDTAETLLANADMAMYQ 411 Query: 247 AKKSGRNRVVCFS 259 AK GR+R FS Sbjct: 412 AKDEGRDRGCIFS 424 >gi|28869374|ref|NP_791993.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852615|gb|AAO55688.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 730 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 21/209 (10%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---- 115 G +L ++ + ++ T LL+ + + +L + +I L+ D L+GL N Sbjct: 246 GAPLVLDVSVEFITLNNTACLLM---NARDIGQLKSAQAQIQHLAYHDPLTGLPNRALLM 302 Query: 116 ---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L V Sbjct: 303 DRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTV 362 Query: 173 GRLGGEEFAA------AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225 RLGG+EF +L + +LA++LR ++ ++ G + +T S GI Sbjct: 363 ARLGGDEFVVLICGLDGSLEHVTHQVRVLADNLRVLL--AEPMFLDGHRLQVTPSVGIVL 420 Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRN 253 P + ++ RAD ALY AK SGRN Sbjct: 421 IPDDGLTP-ADLLKRADIALYRAKDSGRN 448 >gi|71907229|ref|YP_284816.1| response regulator receiver modulated diguanylate cyclase [Dechloromonas aromatica RCB] gi|71846850|gb|AAZ46346.1| response regulator receiver modulated diguanylate cyclase [Dechloromonas aromatica RCB] Length = 313 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 10/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140 ++ ++L + + ++S D L+G+ N F ++ ++ ++++ DIDYFK Sbjct: 130 AVTRKLDAANQELIRISSTDSLTGVANRRYFDEAMSIEWRRARRHSNSIALLMCDIDYFK 189 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND +GH GD+ + ++ + P V R GGE+FA +S A ++A + Sbjct: 190 LYNDTYGHQAGDECLRKIAAAISRHTERPSDTVARYGGEKFAVILPETSIGGALMVAEKI 249 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255 R+ + I +S P+ + +S GIA P +I AD+ALY AKK GR+RV Sbjct: 250 RQATKELNITHASSPTGQVGLSIGIASAAPGFDNPPDDLILAADKALYRAKKEGRDRV 307 >gi|86147999|ref|ZP_01066302.1| putative regulatory component of sensory transduction system [Vibrio sp. MED222] gi|85834223|gb|EAQ52378.1| putative regulatory component of sensory transduction system [Vibrio sp. MED222] Length = 316 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+ L N + L G N ++++ D+D+FK NDN+GH GD Sbjct: 140 LQQQANEDGLTKLYNRRYMDTKLEESIAWHGRRNISMTVILLDVDFFKPYNDNYGHIQGD 199 Query: 153 KVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI 210 K + L++ L +F FVGR GGEEF + A + AN +++ + + ++ Sbjct: 200 KCLQGLANTLKELFVRAGEFVGRYGGEEFVIILSDTDSSAANLQANRVKEALHQMNYVHD 259 Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 S S +T S G+ + E I++I + DQALY AK+SGRN Sbjct: 260 YSAVSDRVTASQGVLSFIPEGGEAIASIYEKVDQALYQAKQSGRN 304 >gi|300991963|ref|ZP_07179747.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1] gi|300406898|gb|EFJ90436.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1] Length = 455 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI Sbjct: 285 DSLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIK----T 340 Query: 162 LVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISS 212 +V + G + R+GGEEF + A LA +R+ +E N + I Sbjct: 341 VVSIIGKSIRPDDLFARVGGEEFGVLLTDIDTKRAKALAERIRENVERLTGDNPEYAIPQ 400 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 401 --KVTISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441 >gi|296390527|ref|ZP_06880002.1| diguanylate cyclase (GGDEF) domain [Pseudomonas aeruginosa PAb1] Length = 398 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 10/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL ++ L+ D L+GL N F ++ + + LS++ D+D+FK IN Sbjct: 213 QELEEKNRQLEYLAGHDPLTGLFNRREFDQLVLMELARIARQPQPLSLLMVDLDHFKYIN 272 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GHP GD+VI ++ L + V RLGGEEF ++EQ+A LA LR+ + Sbjct: 273 DRYGHPFGDEVIRHAANLLRGNTRSSDSVARLGGEEFLLLLPDTAEQQARSLAEKLRERL 332 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E + + G + +T S G+A + + + ADQALY AK SGRNRV Sbjct: 333 EGTPLATQDG-VLCLTASFGVASLDGGGQASYEQLYSAADQALYRAKSSGRNRV 385 >gi|294011328|ref|YP_003544788.1| putative signal transduction protein [Sphingobium japonicum UT26S] gi|292674658|dbj|BAI96176.1| putative signal transduction protein [Sphingobium japonicum UT26S] Length = 655 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 14/196 (7%) Query: 73 IISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYN 126 I T ++L + G K +L + + R L+R D L+G+ N A L G + Sbjct: 190 ITKATHRIVLEALQGKYEKTQLAVKFER---LARFDSLTGVENRMAMQMRLREMFDGRRS 246 Query: 127 EK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 +K +++ + D+D FK+IND+ GH +GD+++ ++++L V R GG+EF Sbjct: 247 DKDPMAVFWMDLDRFKEINDSLGHMIGDQLLCRVAERLSHALDGRGHVARFGGDEFVLIC 306 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243 G+ EA +A D+ + E + G + +T S GIA + ++ AD A Sbjct: 307 PGADRSEAERIAGDI--MAEFTHDFDVGGYLLGVTASMGIAVAPEDGQDSDELLQHADMA 364 Query: 244 LYVAKKSGRNRVVCFS 259 LY AK +GRNR F+ Sbjct: 365 LYQAKHAGRNRHAQFT 380 >gi|227529903|ref|ZP_03959952.1| diguanylate cyclase [Lactobacillus vaginalis ATCC 49540] gi|227350182|gb|EEJ40473.1| diguanylate cyclase [Lactobacillus vaginalis ATCC 49540] Length = 362 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 9/162 (5%) Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFL 158 S D L+GLLN+ A IS+L + SIV DID+FK+IND +GH VG++V+ + Sbjct: 187 SERDDLTGLLNYRALSQGISALTEDRDIHSIVIGGLDIDHFKRINDTYGHFVGNEVLNYF 246 Query: 159 S----DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 S ++ F +V R GGEEF S +E L + K I G Sbjct: 247 STVFRKKIHEAFPDQGYVYRFGGEEFTIVVSNHSIEEVYALLQTIEKQFSEQPIVTKEGV 306 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I I S + + E + + RAD+ LY K +GR +V Sbjct: 307 KITINFSCSLTNHLNGELLDLTLKRADKMLYSVKNNGRGWIV 348 >gi|222110291|ref|YP_002552555.1| diguanylate cyclase [Acidovorax ebreus TPSY] gi|221729735|gb|ACM32555.1| diguanylate cyclase [Acidovorax ebreus TPSY] Length = 507 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 20/178 (11%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L +R S +R D L+G LN F I+ + L + D+D FK IND Sbjct: 336 LRQELDRASAQARHDPLTGSLNRKGFAEAMEREIARARRQDAPLCVALLDVDNFKSINDR 395 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH GD + L+ V + R GGEEF L +E LA + K +E Sbjct: 396 LGHTAGDAALVHLAQVTREVMRPQDQLARYGGEEF-VIILPDTE-----LAEGV-KAMER 448 Query: 206 SQINISS------GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 Q +++ + IT SAG+A+ ++ + I RADQ +Y+AK++G+NRVV Sbjct: 449 LQRELTTRYFLKDQERVLITFSAGVAQVEGEQGSADAIRRADQGMYLAKRTGKNRVVA 506 >gi|148381302|ref|YP_001255843.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC 3502] gi|153932736|ref|YP_001385680.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC 19397] gi|153935193|ref|YP_001389086.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall] gi|148290786|emb|CAL84920.1| putative signaling protein [Clostridium botulinum A str. ATCC 3502] gi|152928780|gb|ABS34280.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC 19397] gi|152931107|gb|ABS36606.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall] Length = 437 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 12/173 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144 E + + N+I +LS I L+ LN +F+ L N++ +SI+F D+DYFK+ ND Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGSFMEKLKDEFDNSKKNKRHISIIFIDVDYFKEYND 314 Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 N+GH GDKV+ + ++ V VGR GG+EF E ++A ++ K I Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGIVGRYGGDEFIVLLNKVETSELEVIAVEISKEI 374 Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +I S S + T+S G+A K E I +I AD+ALY +K++GR+ Sbjct: 375 NKLKIKREYSHISKYQTVSIGVASIIPKKEEKIEDLINYADKALYKSKENGRD 427 >gi|330979900|gb|EGH78200.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 424 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 99/228 (43%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 198 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 247 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 248 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 307 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPSIHI 218 EEF S E +R+ I + +I + + S+ + Sbjct: 308 EEFPIVFAAKSIDECMPHLEAIRETIASYEIQLRNKNDRPQDDQQGRQCRSGAQAGSVSV 367 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 368 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 414 >gi|86605201|ref|YP_473964.1| GGDEF/FHA domain-containing protein [Synechococcus sp. JA-3-3Ab] gi|86553743|gb|ABC98701.1| GGDEF/FHA domain protein [Synechococcus sp. JA-3-3Ab] Length = 261 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F+ L ++ L +++ D+D FK IND +GH GD+ + ++ Sbjct: 101 DPLTGLHNRRFFLEHLQREMAFARRHSFPLHLLYLDLDNFKLINDRWGHLAGDQALIQVA 160 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 QL + R+GG+EF G E + LA LR+ +++ + + + IH+T Sbjct: 161 RQLQDQVRQEDLLARMGGDEFVLMVRGVPEAQILQLAKRLRQAVQSLPLQVGA-EVIHLT 219 Query: 220 ISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S G+A + + + + ADQALY AK+ G NR V Sbjct: 220 CSIGVASWLSLSAETSVQSFLEAADQALYQAKRQGGNREVLL 261 >gi|50086421|ref|YP_047931.1| putative GGDEF family protein [Acinetobacter sp. ADP1] gi|49532397|emb|CAG70109.1| putative GGDEF family protein [Acinetobacter sp. ADP1] Length = 580 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 112/250 (44%), Gaps = 37/250 (14%) Query: 35 FSIFIATVIFIANIF-LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-- 91 + FI TV+ +IF L GLT Y YIL+ + + +SL Y + K Sbjct: 337 WQKFILTVLI--SIFSLLVAGLTLRYIQRYILLPLMEARESILALSLPQSYGQENRKKKR 394 Query: 92 ------ELFISYNRISQL--------------SRIDCLSGLLNHSAFISSLGSYNEK--- 128 ELF + ++ +L + D L+G+ N A + + ++ Sbjct: 395 FKGEFAELFAAIAKLKRLLSQKDALEFQLRNIAHTDTLTGVANRQALEAYFIALEQEPWK 454 Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 L ++ DIDYFKQIND +GH VGD+VI ++DQL + R GG+EF Sbjct: 455 WSDLCLMIIDIDYFKQINDQYGHMVGDQVIQRIADQLQQHVDVSDLIVRYGGDEFLILIE 514 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 + ++A LA + K I + P I ++S G+A T+ ADQAL Sbjct: 515 DIAAEDALQLAEKISKSI----YTLCIAPDISTSVSIGLA--VGARNWLTLFQNADQALL 568 Query: 246 VAKKSGRNRV 255 AK G+NRV Sbjct: 569 RAKAKGKNRV 578 >gi|88704937|ref|ZP_01102649.1| PAS/PAC sensory box/GGDEF family protein [Congregibacter litoralis KT71] gi|88700632|gb|EAQ97739.1| PAS/PAC sensory box/GGDEF family protein [Congregibacter litoralis KT71] Length = 438 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 16/172 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + +++LS D L+G+ N F ++L + +L++V DID FK ND+FGH Sbjct: 262 DSLAKLSMTDGLTGIGNRRRFDTALENEWRRASRHGTELALVLADIDDFKAFNDDFGHLA 321 Query: 151 GDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--- 205 GD + ++ + FG + V R GGEE A G S ++AA +A R+ +E Sbjct: 322 GDDCLKNIA-AAIEAFGNRVGDCVARYGGEELAIILPGLSLEDAASVAEQCRQAVEALGI 380 Query: 206 SQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ G S+ +TIS G+A K+ T+I AD+ LY AK SG+N+V Sbjct: 381 ARKACGDGASV-VTISLGVAAMHPDSKDAAETLIEAADKQLYRAKSSGKNKV 431 >gi|325915298|ref|ZP_08177618.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325538491|gb|EGD10167.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 964 Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 1/128 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L++ DID+FK IND +GH VGD V++ L + L F R GGEEF AA G Sbjct: 836 LALALMDIDHFKHINDEYGHDVGDAVLSALGEALSDQDQAQCFAARHGGEEFLLAATGLD 895 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 ++A L +R+ + ++ + G ++ T S G+A ++ AD+ LY AK Sbjct: 896 AEQARALFERMRQRLATIDVD-AHGITVRCTASMGMAMSDEAPTRRELLALADRRLYQAK 954 Query: 249 KSGRNRVV 256 + GR+R+V Sbjct: 955 RQGRDRLV 962 >gi|313682434|ref|YP_004060172.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313155294|gb|ADR33972.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 324 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/134 (40%), Positives = 73/134 (54%), Gaps = 8/134 (5%) Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV--VVFGTPMFVGRLGGEEFA 181 Y +KL ++ FDID FK IND FGH VGD V+ LS LV + + +FV R GGEEFA Sbjct: 192 QYTDKLFLLLFDIDNFKGINDTFGHNVGDSVLKELS-ALVSRSIRKSDIFV-RWGGEEFA 249 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 S +A +R++I+ + S +H+T S G+ E + RAD Sbjct: 250 ILLRYSDPSTVVKIAEQIRQLIDKN----SFETIVHVTCSFGLTSIQPAETLEQAFERAD 305 Query: 242 QALYVAKKSGRNRV 255 +ALY AKK G+N V Sbjct: 306 KALYRAKKDGKNCV 319 >gi|312134090|ref|YP_004001428.1| diguanylate cyclase [Caldicellulosiruptor owensensis OL] gi|311774141|gb|ADQ03628.1| diguanylate cyclase [Caldicellulosiruptor owensensis OL] Length = 296 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 19/194 (9%) Query: 81 LLGYISGSI------LKELFISYNRISQLSRI---DCLSGLLNHSAFISSL------GSY 125 LL ++G I L ++ ++Y +I++L+ + D L+GL N L S+ Sbjct: 103 LLKDVTGKIFIEDIDLSDVQLTYQKINKLNELVVKDSLTGLYNRRFIDERLDVEIIRASF 162 Query: 126 NEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAA 183 ++ SI DIDYFK++ND +GH GDKV+ +D + + + R GGEEF Sbjct: 163 SKSYFSIAMADIDYFKKVNDTYGHTAGDKVLQTFADIIRKNIRIESDWAARYGGEEFLIF 222 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQ 242 A +A +RK +EN+ I + + I IT S GI+ + +I AD+ Sbjct: 223 FQNQKSINAFEIAERIRKELENTVIKLENFE-IKITASFGISSLENYSMTSKELIKIADE 281 Query: 243 ALYVAKKSGRNRVV 256 LY AK SGRN+VV Sbjct: 282 KLYYAKNSGRNKVV 295 >gi|300926731|ref|ZP_07142506.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] gi|301326922|ref|ZP_07220214.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] gi|300417307|gb|EFK00618.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1] gi|300846393|gb|EFK74153.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] Length = 430 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|296169116|ref|ZP_06850775.1| possible diguanylate cyclase with PAS/PAC sensor [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896236|gb|EFG75898.1| possible diguanylate cyclase with PAS/PAC sensor [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 584 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 12/170 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 + R+ +L+ D L+GL+N + + L + E+ L ++F D+D FK+IND +GH Sbjct: 416 AEQRLERLATFDTLTGLVNRAEAMGRLAAALEQPQPAGTCLGVLFCDVDQFKEINDTWGH 475 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLR-KIIENS 206 GD V+A L+ ++ VGR GG+E G S E +A +R + E Sbjct: 476 GTGDLVLATLAARIRESVRRGDTVGRTGGDEILVLLPGVGSIDEVTQIAEKIRCRAAEPI 535 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +G ++H T+S G + + TI RAD A+Y AK +N VV Sbjct: 536 DV---AGEALHATLSIGATVAVPGDSVDTITARADAAMYRAKLGDKNTVV 582 >gi|291085418|ref|ZP_06353032.2| diguanylate cyclase [Citrobacter youngae ATCC 29220] gi|291070928|gb|EFE09037.1| diguanylate cyclase [Citrobacter youngae ATCC 29220] Length = 570 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 75/163 (46%), Gaps = 7/163 (4%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +L + E +S + DID+FK IND FGH GD VI ++ Sbjct: 406 DPLTGLRNRHHLEDTLRTQMSQAVRNKEPISCLMIDIDHFKNINDRFGHEAGDSVIKSIA 465 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + V R GGEEF G+ EQ A A D+ + + H+ Sbjct: 466 AIIQRVVHDSGLAFRYGGEEFLVLLAGADEQAANGFATDIYNGVRELSLRFGVSDIGHVD 525 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +S G+A ++ AD ALY AK+ GR+R+V F +E Sbjct: 526 VSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSFGMLE 568 >gi|291286735|ref|YP_003503551.1| periplasmic/7TM domain sensor diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] gi|290883895|gb|ADD67595.1| periplasmic/7TM domain sensor diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] Length = 614 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 90/179 (50%), Gaps = 10/179 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIN 143 KEL + R+ +L+ ID L+GL N F +L + I+ DIDYFK N Sbjct: 435 KELEEANQRLVELASIDVLTGLYNRRIFNETLQKEFSRAKRTGSLISIILIDIDYFKNYN 494 Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD +A L+D V + + R GGEEFA + A +A +R Sbjct: 495 DYYGHLEGDACLAELADIFTNSVNRSTDTIARYGGEEFAIILCDTRLDGALKVAESIRFT 554 Query: 203 IENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +E S I P ++T+S GIA ++ ++ +ADQALY AK SGRN+VV S Sbjct: 555 VEESCIPHKMSPIGYVTVSCGIASITPLMQDKPEDLLSKADQALYKAKSSGRNQVVTSS 613 >gi|302520942|ref|ZP_07273284.1| diguanylate cyclase [Streptomyces sp. SPB78] gi|302429837|gb|EFL01653.1| diguanylate cyclase [Streptomyces sp. SPB78] Length = 208 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 13/154 (8%) Query: 104 SRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +R D L+GL AF +++ +V D+D+FKQ+ND GH GD ++A ++ + Sbjct: 29 ARRDPLTGLWTRDAFTRKARRLLRDKRAVVVLADVDHFKQVNDTHGHAAGDALLASVARR 88 Query: 162 LVVVFGTPMFVGRLGGEEFAAAAL---GSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 L G GRLGG+EFAA L G++ A+L L + E +++ Sbjct: 89 LAHATGADGVCGRLGGDEFAAVLLDKDGTAADLLALLHGVLARPAEGQPSEVAT------ 142 Query: 219 TISAGI--AERCHKEPISTIIYRADQALYVAKKS 250 T+S G A E +S ++ RAD+A+Y AK++ Sbjct: 143 TVSLGWVRAADHSGEGLSALLGRADEAMYEAKRA 176 >gi|126640809|ref|YP_001083793.1| diguanylate cyclase [Acinetobacter baumannii ATCC 17978] gi|126386693|gb|ABO11191.1| diguanylate cyclase [Acinetobacter baumannii ATCC 17978] Length = 323 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-----SIVFF--DIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L F+ S+ EK+ + FF D+D+FK++ND++GH +GD+ + Sbjct: 162 DELTSSLTRRQFLQSVRLLQEKVQKENKTSAFFMLDVDHFKKVNDSYGHLIGDRALQTCV 221 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + +GR GGEEFA ++ + A LA +R I I + I + Sbjct: 222 TTIQNILHPHDLLGRFGGEEFAIFIPDTTREAAFELAERIRIQISQQPIYVYGKLPIFVQ 281 Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S GI+ + I ++ AD ALY AK+ GRNRV Sbjct: 282 VSIGISLYSPSYHRSIESLFKEADDALYQAKRQGRNRV 319 >gi|170725889|ref|YP_001759915.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169811236|gb|ACA85820.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 581 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 17/173 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +S ID L+G N F + S +N+ +SI+ FD+D FK ND +GH +G Sbjct: 401 QVKSISEIDGLTGAYNRRFFDHKLKHELKSTSKFNQPISIILFDVDNFKLFNDRYGHVIG 460 Query: 152 DKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D+ + +S L + + R GGEEF + Q A+ +A +R+ E ++ I Sbjct: 461 DQCLKRISYALKTLPEMQDRIFARYGGEEFIVFLTATDNQTASDIAEIMRE--EVIKLAI 518 Query: 211 SSGPSIH---ITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVC 257 S+H TIS G+ + EP T+I++AD ALY AK SGRN +V Sbjct: 519 PHADSLHNELTTISIGVT-TSNSEPGITAETLIHQADIALYQAKASGRNCIVS 570 >gi|108804911|ref|YP_644848.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rubrobacter xylanophilus DSM 9941] gi|108766154|gb|ABG05036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rubrobacter xylanophilus DSM 9941] Length = 545 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 10/160 (6%) Query: 106 IDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 +D L+GLLN + F+ L S + +++++ D+D FK+IND FGH GD+V+ ++ Sbjct: 122 MDPLTGLLNRTLFLDRLEHAACRSRHAAIALLYMDLDGFKEINDTFGHEAGDEVLREVAR 181 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHIT 219 +L R+GG+EF S EA +A R+++E+ + I++G + + Sbjct: 182 RLRSGLRPGDTAARIGGDEFGILLEDSRASEALRVA---RRLLEDLREPIAAGERRVCVA 238 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S GIA R ++ RAD A+Y AK+ G+NR F Sbjct: 239 ASVGIAAGRGEDRGALHLMRRADLAMYRAKQRGKNRCEVF 278 >gi|39936282|ref|NP_948558.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris CGA009] gi|39650137|emb|CAE28660.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) [Rhodopseudomonas palustris CGA009] Length = 656 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 23/174 (13%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148 E+ S + Q++R D L+GL N S F + + ++ V FD+D FK IND GH Sbjct: 213 EVLNSNRALEQIARADPLTGLANRSHFRDAAADACRSGQGVAFVLFDVDNFKIINDTRGH 272 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---------AAAALGSSEQEAAILANDL 199 GD+VIA ++D L + G+ RLGG+EF AA AL + + + L L Sbjct: 273 DAGDRVIAAVADLLRLSCGSHDLPVRLGGDEFIVVLKGDDVAARALSLARRLSGALTRPL 332 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252 + + G + IT S GIA + + RAD ALY AK GR Sbjct: 333 QVL----------GQPLAITCSIGIAAHPGGPIDVEDVFSRADAALYRAKDDGR 376 >gi|120597528|ref|YP_962102.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|120557621|gb|ABM23548.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|319427693|gb|ADV55767.1| diguanylate cyclase [Shewanella putrefaciens 200] Length = 454 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 8/176 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQIND 144 +L NR + R D L+ LLN A ++ SY+ + +I+ DID+FK +ND Sbjct: 276 DLLFEQNREVESGR-DVLTRLLNRKFLPAVMTKEVSYSRRNKSQFAILAIDIDHFKTVND 334 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 ++GH GD V+ L+ L ++ RLGGEEF + + +EAA+ A ++R+ +E Sbjct: 335 SYGHEGGDLVLQHLAALLSNTGRGGDYLFRLGGEEFLMLLVDINAREAALSAENIRRKVE 394 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + IT+S G+A + AD AL+ AK++GRN ++ D Sbjct: 395 RETFLLPHNQQLQITVSIGLAMYDGHPDYQRCLRAADDALFAAKRAGRNCIITAID 450 >gi|326316268|ref|YP_004233940.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373104|gb|ADX45373.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 516 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 +R S +R D L+G LN +L + L + D+D FK IND GH Sbjct: 350 DRASAQARHDPLTGSLNRKGLDEALDREVARALRNDAPLCVALLDLDNFKAINDRLGHTG 409 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENS 206 GD+ + L+ V + R GGEEF +L + A L +L + Sbjct: 410 GDEALKHLAGVTREVMRPQDQLARYGGEEFVIILPDTSLAQGVEAMARLQREL-----TT 464 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + + IT SAG+A+ +E I RADQ +Y+AK+SG+NRV+ Sbjct: 465 RYFLKDQEKVLITFSAGVAQLAPQETTVEAIRRADQGMYLAKRSGKNRVMA 515 >gi|269839222|ref|YP_003323914.1| response regulator receiver modulated diguanylate cyclase [Thermobaculum terrenum ATCC BAA-798] gi|269790952|gb|ACZ43092.1| response regulator receiver modulated diguanylate cyclase [Thermobaculum terrenum ATCC BAA-798] Length = 303 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 11/194 (5%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126 + + L+ + S+ ++L +++ Q +RID L+G N L S Y Sbjct: 108 VELRARLIAAHRITSLHQQLKELNDQLFQQARIDSLTGTYNRLRLQEDLASMDNRAARYG 167 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 ++ FDID+FK+ ND +GH GD+++ ++ ++ V R GGEEF Sbjct: 168 HTYALALFDIDHFKRYNDTYGHGAGDRMLCTVARTILSCCRASDSVYRYGGEEFLVLLPE 227 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIA--ERCHKEPISTIIYRADQ 242 A +A+ +R ++ I P +T+SAG+A + T++ AD+ Sbjct: 228 QRCTTAVKVADRVRASVQGLGIPHEGRPDDPKVVTVSAGVADLDSARDRSAQTVLQLADE 287 Query: 243 ALYVAKKSGRNRVV 256 ALY AK +GRN VV Sbjct: 288 ALYRAKHAGRNTVV 301 >gi|213968028|ref|ZP_03396174.1| response regulator [Pseudomonas syringae pv. tomato T1] gi|301383655|ref|ZP_07232073.1| response regulator [Pseudomonas syringae pv. tomato Max13] gi|302063178|ref|ZP_07254719.1| response regulator [Pseudomonas syringae pv. tomato K40] gi|302131266|ref|ZP_07257256.1| response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927371|gb|EEB60920.1| response regulator [Pseudomonas syringae pv. tomato T1] gi|331014725|gb|EGH94781.1| response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 551 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFIS-----SLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL NH+ + S S E + F DID+FK++ND+ GHP+GD+VI L+ Sbjct: 379 DSLTGLYNHTHILQLLEDCSFRSRREGKPLCFAMLDIDHFKRVNDSHGHPMGDRVIKSLA 438 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 L F+GR GGEEFA + A + +++R ++I+ + P+ + Sbjct: 439 LFLKQRLRKTDFIGRYGGEEFAIVMPDTDIHNAHKVLDEIRHRF--AEIHYPAQPADLFC 496 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T SAG+ + ++ +AD ALY AK +GRN+V Sbjct: 497 TFSAGVVCLGADDDSLSLASQADTALYRAKHAGRNQV 533 >gi|90416683|ref|ZP_01224613.1| sensory transduction protein kinase [marine gamma proteobacterium HTCC2207] gi|90331436|gb|EAS46672.1| sensory transduction protein kinase [marine gamma proteobacterium HTCC2207] Length = 415 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 80/181 (44%), Gaps = 33/181 (18%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD---KVIAFL 158 Q+ D L+ + N A + + SI D DYFK+IND FGH +GD +VIA L Sbjct: 234 QIGYRDDLTQIGNRRALQQTAKTLRGPYSIAMVDADYFKKINDQFGHDLGDQALRVIASL 293 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN------------- 205 +Q G P R GGEEF G +EQE R+ I N Sbjct: 294 LNQ-TAEGGKPF---RYGGEEFCLLFRGKTEQEVLDALEACRQAIANYDMVVRDKQLRPK 349 Query: 206 --SQINISSGPS-----IHITISAGIA--ERCHK----EPISTIIYRADQALYVAKKSGR 252 Q G S + +T+S G+A + H P ++ RADQALY AK SGR Sbjct: 350 KLKQGETRRGASKRKSNLRLTVSIGVASSDMAHSSNSLNPFEQVLKRADQALYRAKASGR 409 Query: 253 N 253 N Sbjct: 410 N 410 >gi|70731670|ref|YP_261412.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68345969|gb|AAY93575.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5] Length = 308 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 1/122 (0%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK+INDN GH GD+V+ ++ + V R GGEEF + + AA+ Sbjct: 185 DIDHFKRINDNHGHSAGDQVLKAVAAAIKGQLRNVDMVFRFGGEEFLILLSNTGREAAAM 244 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + LR + +Q + G I +T+S G + E +++ RAD ALYVAK+ GRNR Sbjct: 245 VGERLRHAAQ-AQDYRADGQPIELTVSLGCSTLLPGESAESLLRRADSALYVAKREGRNR 303 Query: 255 VV 256 + Sbjct: 304 LA 305 >gi|147669830|ref|YP_001214648.1| diguanylate cyclase with GAF sensor [Dehalococcoides sp. BAV1] gi|146270778|gb|ABQ17770.1| diguanylate cyclase with GAF sensor [Dehalococcoides sp. BAV1] Length = 841 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 18/181 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y + + + D L+ L NH F I+ + S++ D+D FK ND +GH Sbjct: 459 YTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHL 518 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+++ L L + R GGEEFA G+ ++A +A +RK IE+ Sbjct: 519 AGDQLLRRLGKILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNIESK--- 575 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 SS + IT S G+A + KE II +AD ALY +K++GRNR +D+ NN+ Sbjct: 576 -SSFRDMPITASLGLANWPTDGVMKE---EIIAKADAALYRSKETGRNRTSLPADLNNNS 631 Query: 266 C 266 Sbjct: 632 T 632 >gi|15596304|ref|NP_249798.1| hypothetical protein PA1107 [Pseudomonas aeruginosa PAO1] gi|107100558|ref|ZP_01364476.1| hypothetical protein PaerPA_01001583 [Pseudomonas aeruginosa PACS2] gi|218892929|ref|YP_002441798.1| hypothetical protein PLES_42141 [Pseudomonas aeruginosa LESB58] gi|254234241|ref|ZP_04927564.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254239476|ref|ZP_04932798.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|9947025|gb|AAG04496.1|AE004541_1 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126166172|gb|EAZ51683.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126192854|gb|EAZ56917.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218773157|emb|CAW28969.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] Length = 398 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 10/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL ++ L+ D L+GL N F ++ + + LS++ D+D+FK IN Sbjct: 213 QELEEKNRQLEYLAGHDPLTGLFNRREFDQLVLMELARIARQPQPLSLLMVDLDHFKYIN 272 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GHP GD+VI ++ L + V RLGGEEF ++EQ+A LA LR+ + Sbjct: 273 DRYGHPFGDEVIRHAANLLRGNTRSSDSVARLGGEEFLLLLPDTAEQQARSLAEKLRERL 332 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E + + G + +T S G+A + + + ADQALY AK SGRNRV Sbjct: 333 EGTPLATQDG-VLCLTASFGVASLDGGGQASYEQLYSAADQALYRAKSSGRNRV 385 >gi|330961138|gb|EGH61398.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 685 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ NEK L + Sbjct: 227 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRNEKADKYLVV 283 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND+ GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 284 LFMDLDGFKQINDSLGHDAGDQVLLWVAEQFKECMRPYDVLARVGGDEFTVVIDGLDYPE 343 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 344 QAAKIAEKLIERVSSKRQVD---GVDIALGASVGIATYPDCGSN-LDGLLRAADIAMYEA 399 Query: 248 KKSGRNR 254 K++GR + Sbjct: 400 KRAGRKQ 406 >gi|308185511|ref|YP_003929643.1| hypothetical protein Pvag_pPag10133 [Pantoea vagans C9-1] gi|308055791|gb|ADO07961.1| Uncharacterized 80.5 kDa protein in ntrC 5'region [Pantoea vagans C9-1] Length = 709 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 10/179 (5%) Query: 87 GSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFK 140 G I++++ Y R+ +L+ +D L+ L + SAF+ +G + +++ D+D FK Sbjct: 258 GMIIRDVTARYESEARLCELASLDMLTRLASRSAFMDQVGQLTKAGVPYTLLMTDLDGFK 317 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ++ND GH GD ++ +++Q+ V + RLGG+EF G S EAAI A L Sbjct: 318 EVNDTLGHAAGDALLCHVAEQIRAVCAGAVTAARLGGDEFVILLAGGS-AEAAITAEKLI 376 Query: 201 KIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ + P + + S GIA H S ++ AD ALY AK SG+ + F Sbjct: 377 AAVQ-TPFRYHDSPVV-VGASTGIASYPEHGRDPSAVMSAADLALYRAKASGKGCSILF 433 >gi|302521275|ref|ZP_07273617.1| diguanylate cyclase [Streptomyces sp. SPB78] gi|302430170|gb|EFL01986.1| diguanylate cyclase [Streptomyces sp. SPB78] Length = 206 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 15/155 (9%) Query: 104 SRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +R D L+GL AF +++ +V D+D+FKQIND GH GD ++A ++ + Sbjct: 29 ARRDPLTGLWTRDAFTRRARRLLRDKRAVVVLADVDHFKQINDTHGHAAGDALLASVARR 88 Query: 162 LVVVFGTPMFVGRLGGEEFAAAAL---GSSEQEAAILANDLRKIIENSQINISSGPS--- 215 L G GRLGG+EFAA L G++ A+L L + E +++ S Sbjct: 89 LAHATGADGVCGRLGGDEFAAVLLDKDGTAADLLALLHGVLARPAEGQPAEVATTVSLGW 148 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 + T AG +S+++ RAD+A+Y AK++ Sbjct: 149 VRATDHAGA-------DLSSLLERADEAMYEAKRA 176 >gi|218532240|ref|YP_002423056.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] gi|218524543|gb|ACK85128.1| diguanylate cyclase [Methylobacterium chloromethanicum CM4] Length = 369 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 13/170 (7%) Query: 107 DCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 D L+GL N +F SL + S++ DID FK+ ND +GH GD+V+ Sbjct: 195 DALTGLGNRKSFEESLRKSVDLQSASAQQGKPASLIVIDIDSFKRFNDLYGHLTGDQVLR 254 Query: 157 FLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGP 214 ++ + G + R GGEEF + EA +A +R + + + S+G Sbjct: 255 LVAIVMREHIGQRNATLARFGGEEFGIVLPETDRVEARAIAERVRIGVTGRELVKRSTGE 314 Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S+ +T+S G+A + + +++ RAD L+ AK++GRNR + +++EN Sbjct: 315 SLGKVTVSLGVATQREDDNAVSLLERADACLFAAKRAGRNRTLDETEVEN 364 >gi|150021511|ref|YP_001306865.1| response regulator receiver modulated diguanylate cyclase [Thermosipho melanesiensis BI429] gi|149794032|gb|ABR31480.1| response regulator receiver modulated diguanylate cyclase [Thermosipho melanesiensis BI429] Length = 465 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 13/169 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDN 145 KE F++ S+ D L+GL N ++ + Y E + FDID FK IND Sbjct: 295 FKEYFVA-------SQYDSLTGLYNKKVLMNKIEEYIDKYEEDTVLAIFDIDNFKSINDT 347 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH VGD V+ +++ + + R GGEEF SE I++ KI +N Sbjct: 348 YGHVVGDNVLKEIANIIRSITKGNGICARYGGEEF-VILFTDSESAIEIVSKIYSKIRKN 406 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + ++ + I +T+S GIA + I+ I +AD+ LY AKK G++R Sbjct: 407 NWPSLLNDNRI-VTVSCGIARYRNGLRITEFINKADELLYKAKKDGKDR 454 >gi|119946934|ref|YP_944614.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] gi|119865538|gb|ABM05015.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] Length = 711 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 33/197 (16%) Query: 85 ISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFD 135 +SG+++ EL + ++I QL+ D L+GL N +AF + Y +++F D Sbjct: 245 VSGTVVDVTELTQAQDQILQLAHFDSLTGLANRNAFRKRVELAMERAKQYGHLGAVLFLD 304 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVG-------------RLGGEEFA 181 +D FK+IND GH +GD+++ ++ +L +V G+ G RLGG+EF Sbjct: 305 LDNFKRINDTLGHSIGDQLLQEVARRLTDIVRGSDSICGTNFNHAIDDNLISRLGGDEFT 364 Query: 182 A-----AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236 + +E A + N + II S +I PSI I I H E + ++ Sbjct: 365 VLLPEIGKIKDAEHAARRVLNSIGDIINLSGHDIVVTPSIGIAIFP-----HHGENVDSL 419 Query: 237 IYRADQALYVAKKSGRN 253 + AD A+Y K++G+N Sbjct: 420 LKNADAAMYYVKRAGKN 436 >gi|186472517|ref|YP_001859859.1| diguanylate cyclase with GAF sensor [Burkholderia phymatum STM815] gi|184194849|gb|ACC72813.1| diguanylate cyclase with GAF sensor [Burkholderia phymatum STM815] Length = 418 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 14/174 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +L D L+GL N F L Y L +F DID FK IND GH + Sbjct: 244 EQLERLGATDALTGLPNRRYFDERLREETMRASRYRLPLGCLFIDIDGFKPINDAHGHAI 303 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ +A + L + R GGEEFA G + A+ A +R + +++ Sbjct: 304 GDRALALVGACLRKQTRLGDTIARYGGEEFAVLLQGDLKDSLAV-AERMRTAVAQLELHD 362 Query: 211 SSGPSIHITISAGIAERCHKEPIS------TIIYRADQALYVAKKSGRNRVVCF 258 + G I +T+S G + + T++ AD+A+Y AK GRNRVV Sbjct: 363 NGGARIPLTVSIGASAHAMQSGSDLDRLGRTLVDEADRAMYKAKADGRNRVVTL 416 >gi|15801824|ref|NP_287842.1| hypothetical protein Z2421 [Escherichia coli O157:H7 EDL933] gi|15831179|ref|NP_309952.1| hypothetical protein ECs1925 [Escherichia coli O157:H7 str. Sakai] gi|168749015|ref|ZP_02774037.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4113] gi|168756026|ref|ZP_02781033.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4401] gi|168762638|ref|ZP_02787645.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4501] gi|168775170|ref|ZP_02800177.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4196] gi|168799655|ref|ZP_02824662.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC508] gi|189010557|ref|ZP_02807882.2| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4076] gi|189403280|ref|ZP_02794434.2| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4486] gi|191171038|ref|ZP_03032589.1| sensory box-containing diguanylate cyclase [Escherichia coli F11] gi|195938010|ref|ZP_03083392.1| hypothetical protein EscherichcoliO157_16502 [Escherichia coli O157:H7 str. EC4024] gi|208810988|ref|ZP_03252821.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4206] gi|208816098|ref|ZP_03257277.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4045] gi|208820633|ref|ZP_03260953.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4042] gi|209400929|ref|YP_002270401.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4115] gi|217329215|ref|ZP_03445295.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. TW14588] gi|291282436|ref|YP_003499254.1| hypothetical protein G2583_1690 [Escherichia coli O55:H7 str. CB9615] gi|300972032|ref|ZP_07171792.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1] gi|12515414|gb|AAG56456.1|AE005372_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361390|dbj|BAB35348.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187769266|gb|EDU33110.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4196] gi|188016556|gb|EDU54678.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4113] gi|188999686|gb|EDU68672.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4076] gi|189356778|gb|EDU75197.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4401] gi|189361535|gb|EDU79954.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4486] gi|189367032|gb|EDU85448.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4501] gi|189377944|gb|EDU96360.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC508] gi|190908770|gb|EDV68358.1| sensory box-containing diguanylate cyclase [Escherichia coli F11] gi|208724494|gb|EDZ74202.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4206] gi|208732746|gb|EDZ81434.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4045] gi|208740756|gb|EDZ88438.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4042] gi|209162329|gb|ACI39762.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. EC4115] gi|209771348|gb|ACI83986.1| hypothetical protein ECs1925 [Escherichia coli] gi|209771350|gb|ACI83987.1| hypothetical protein ECs1925 [Escherichia coli] gi|209771352|gb|ACI83988.1| hypothetical protein ECs1925 [Escherichia coli] gi|209771354|gb|ACI83989.1| hypothetical protein ECs1925 [Escherichia coli] gi|209771356|gb|ACI83990.1| hypothetical protein ECs1925 [Escherichia coli] gi|217317654|gb|EEC26082.1| sensory box-containing diguanylate cyclase [Escherichia coli O157:H7 str. TW14588] gi|290762309|gb|ADD56270.1| hypothetical protein G2583_1690 [Escherichia coli O55:H7 str. CB9615] gi|300309254|gb|EFJ63774.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1] gi|320642611|gb|EFX11859.1| hypothetical protein ECO9389_21874 [Escherichia coli O157:H- str. 493-89] gi|320647964|gb|EFX16672.1| hypothetical protein ECO2687_09804 [Escherichia coli O157:H- str. H 2687] gi|320653567|gb|EFX21672.1| hypothetical protein ECO7815_06847 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659156|gb|EFX26748.1| hypothetical protein ECO5905_05446 [Escherichia coli O55:H7 str. USDA 5905] gi|324011379|gb|EGB80598.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1] gi|326340990|gb|EGD64783.1| hypothetical protein ECF_03538 [Escherichia coli O157:H7 str. 1125] gi|326343228|gb|EGD66995.1| hypothetical protein ECoA_02665 [Escherichia coli O157:H7 str. 1044] Length = 430 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|320103469|ref|YP_004179060.1| diguanylate cyclase [Isosphaera pallida ATCC 43644] gi|319750751|gb|ADV62511.1| diguanylate cyclase [Isosphaera pallida ATCC 43644] Length = 367 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 18/212 (8%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 G E + + ++ IS + L + S LK +N++ + D L+GL N + Sbjct: 124 GPEPVKLRENDIICISPEVRLKFLHHSPRSLKHHEEMFNKVVR----DDLTGLYNRMYVV 179 Query: 120 SSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 L ++ L++ D+D FK IND +GH VGD+V+ L L + P F Sbjct: 180 EMLEGERDRNAYRGLGLALALIDLDRFKSINDTYGHQVGDQVLIELGGLLCELIPPPGFS 239 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGI------A 225 RLGGEEF + S + A LA +R + N + + G +H+T S G+ Sbjct: 240 ARLGGEEFLSVYPAESLEFACRLAETIRIRVANQPFGMQTLGFPLHLTTSIGLLFLELTE 299 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 R + I RAD LY AK GR++V+ Sbjct: 300 TRQPDDRSEHWITRADGLLYRAKAMGRDQVMA 331 >gi|254563309|ref|YP_003070404.1| diguanylate cyclase [Methylobacterium extorquens DM4] gi|254270587|emb|CAX26590.1| putative diguanylate cyclase (2 GGDEF motifs) [Methylobacterium extorquens DM4] Length = 355 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 13/170 (7%) Query: 107 DCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 D L+GL N +F SL + S++ DID FK+ ND +GH GD+V+ Sbjct: 181 DALTGLGNRKSFEESLRKSVDRQSASAQLGKPASLIVIDIDSFKRFNDLYGHLTGDQVLR 240 Query: 157 FLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGP 214 ++ + G + R GGEEF + EA +A +R + + + S+G Sbjct: 241 LVAIVMREHIGQKNATLARFGGEEFGIVLPETDRVEARAIAERVRIGVTGRELVKRSTGE 300 Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S+ +T+S G+A + + +++ RAD L+ AK++GRNR + +++EN Sbjct: 301 SLGKVTVSLGVATQREDDNAVSLLERADACLFAAKRAGRNRTLDETEVEN 350 >gi|193067083|ref|ZP_03048052.1| sensory box-containing diguanylate cyclase [Escherichia coli E110019] gi|192959673|gb|EDV90107.1| sensory box-containing diguanylate cyclase [Escherichia coli E110019] Length = 430 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|163852479|ref|YP_001640522.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163664084|gb|ABY31451.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 352 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 18/164 (10%) Query: 106 IDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+GL N F + S++ DID+FK +ND GH GD+V+ Sbjct: 184 TDALTGLANRKTFDGFLRDSITRTRSDSGSTFSLLMLDIDHFKGLNDRHGHRFGDQVLRL 243 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLR--KIIENSQINIS 211 + L R GGEEFA A +G+ A + LR ++++ ++ Sbjct: 244 VGRLLSAKTTDRDLAARYGGEEFAIVLGEAGIGAGVALAQEICGRLRGQRLVKRGTGDVV 303 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +TISAG+A+ E +I RAD+ALY AK++GR+RV Sbjct: 304 A----QVTISAGVAQYRPGEAARDVIERADRALYEAKRTGRDRV 343 >gi|160873975|ref|YP_001553291.1| diguanylate cyclase [Shewanella baltica OS195] gi|160859497|gb|ABX48031.1| diguanylate cyclase [Shewanella baltica OS195] gi|315266204|gb|ADT93057.1| diguanylate cyclase with extracellular sensor [Shewanella baltica OS678] Length = 507 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139 ++ ++L S + LS D L+ L N F + L NE+ + +V DIDYF Sbjct: 333 TLRQQLEASNAELEFLSTHDPLTKLYNRHYF-NRLFINNEQHDQSAKAGMCLVMIDIDYF 391 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND GH VGD+++ +S L V R GGEEF SS L + Sbjct: 392 KEINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCVRI 451 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I++ Q ++ +T S G+A+ EP+ RAD+ALY AK GRN++ Sbjct: 452 AERIKHYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQM 503 >gi|77918711|ref|YP_356526.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77544794|gb|ABA88356.1| response regulator receiver modulated diguanylate cyclase [Pelobacter carbinolicus DSM 2380] Length = 323 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 14/165 (8%) Query: 101 SQLSRI---DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 SQL+RI D L+GL N + F +++ + LS++ D+D+FK+IND +GH Sbjct: 137 SQLARIALTDSLTGLYNRAYFDATITQEVARCSRRGLPLSLLMVDLDHFKKINDTYGHLA 196 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ +A ++ L V R GGEEFA ++ AA +A +RK I SQ+++ Sbjct: 197 GDQALAAVALVLKEQSRISDTVCRFGGEEFAVILPETTNANAATVAERIRKKI--SQLDL 254 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + +I G A+ ++ +I AD ALY AK GRNRV Sbjct: 255 AF--PVTASIGVGSAKVTNQLLPDHLIAEADGALYEAKSQGRNRV 297 >gi|167037787|ref|YP_001665365.1| PAS/PAC sensor-containing diguanylate cyclase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116202|ref|YP_004186361.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856621|gb|ABY95029.1| diguanylate cyclase with PAS/PAC sensor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929293|gb|ADV79978.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 302 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L+ ID L+G+LN I YN K +++F D+D FK IND +GH +G Sbjct: 135 KLRNLAFIDELTGVLNRRGLDFFIKEKIKETKRYNRKFAVLFIDLDNFKDINDLYGHHIG 194 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAAILANDLRKIIENSQ 207 DKV+ + + L V R GG+E F + S E+ LA + +IENS Sbjct: 195 DKVLKMIGETLKSNLRANDIVARFGGDEFIVIFEIEDINSIEE----LAQKMITLIENSF 250 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 G I ++ S G ++ ++ +AD+ +YV+K G+NR Sbjct: 251 FE-EKGQIIKVSASIGGVMIKKEDTPEKLLKKADRLMYVSKAKGKNR 296 >gi|213971020|ref|ZP_03399141.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] gi|301385583|ref|ZP_07234001.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13] gi|302058833|ref|ZP_07250374.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40] gi|302132138|ref|ZP_07258128.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924256|gb|EEB57830.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] Length = 677 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 8/157 (5%) Query: 106 IDCLSGLLNHSAFISSLGS-----YNEKLSIV--FFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+ L N +A+ L +K S++ D+D+FK+IND +GH GDKV+ + Sbjct: 519 IDPLTSLPNRAAWGERLEQEMADWQRDKNSLLVCILDLDHFKRINDGYGHLAGDKVLKIV 578 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ F+ R GGEEF + L ++LR +E + G + I Sbjct: 579 ANVFKKRLRPADFLARFGGEEFVMLLPATLLGAGLTLLDELRTAVELCPFHFK-GERVTI 637 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 T+S G+ E T I RADQALY AK++GRNRV Sbjct: 638 TVSIGVTALRTGERSDTAIKRADQALYRAKENGRNRV 674 >gi|153837196|ref|ZP_01989863.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus AQ3810] gi|149749459|gb|EDM60213.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus AQ3810] Length = 592 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 18/168 (10%) Query: 100 ISQLSRIDCLSGLLNH---SAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++Q S D L+GL N ++ + + N ++ D+D+FK ND +GH +GD++ Sbjct: 423 LTQESTTDLLTGLHNRRYLEVWLEKMARRTPNRTFALAVLDVDHFKAFNDTYGHDIGDQM 482 Query: 155 IAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + ++ +F G R GGEEF + + A LR +IEN+ + I Sbjct: 483 LMHIAS----IFNESTRSGDLLIRWGGEEFVLLVEVNDPNDCAKSLERLRHVIENTPLII 538 Query: 211 SSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNR 254 S P I+ TIS G +R K+ + ADQALY AK++GRN+ Sbjct: 539 DSKP-INATISLGAVDRLSAQTIKQEWDQWFFLADQALYDAKQAGRNQ 585 >gi|325271495|ref|ZP_08138013.1| diguanylate cyclase [Pseudomonas sp. TJI-51] gi|324103385|gb|EGC00714.1| diguanylate cyclase [Pseudomonas sp. TJI-51] Length = 427 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 30/204 (14%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF 133 ++I S ++ I+ ++ E + Q++ D L+GL A + I Sbjct: 219 LNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPGRRALNERMQRLGRNYVIAM 271 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D+FK+ ND GH VGD+V+ ++ +L V R GGEEFA G + +E Sbjct: 272 TDVDHFKKFNDTHGHDVGDQVLRLVASRLAKV-TGGGRAYRYGGEEFALVFAGKTAEECV 330 Query: 194 ILANDLRKIIENSQINI-------------------SSGPSIHITISAGIAERC--HKEP 232 +R++I N +++ SSG ++ +TIS G+AER H+ P Sbjct: 331 PHVEAVREVIANYVMHLRDKYNRPQDDTAGRQRRAGSSGGTVSVTISIGVAERQADHRNP 390 Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256 ++ ADQALY AK +GRN VV Sbjct: 391 -EAVLKSADQALYDAKGAGRNCVV 413 >gi|323172288|gb|EFZ57925.1| hypothetical protein ECLT68_2938 [Escherichia coli LT-68] Length = 430 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|315178611|gb|ADT85525.1| hypothetical protein vfu_A00298 [Vibrio furnissii NCTC 11218] Length = 497 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVI 155 N + + S ID L+GL N A + L S E + + DIDYFK IND +GH GD V+ Sbjct: 330 NTLRKESLIDGLTGLNNRRALDNDLPSLIEDGATLVAMLDIDYFKSINDTYGHQTGDTVL 389 Query: 156 ---AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 A +++ + T ++ R GGEEF + + +A + LR I +Q Sbjct: 390 KTFAAIAEAQLPPQSTRIY--RYGGEEFIIVFVRVTPSQALEMLEQLRLSI--AQYQWHQ 445 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 GP +T SAG+A + IS AD LY AK+SGRNR+V Sbjct: 446 GPH-QVTFSAGLASCADADAISL----ADARLYEAKRSGRNRIV 484 >gi|315127561|ref|YP_004069564.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913] gi|315016075|gb|ADT69413.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913] Length = 399 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 17/165 (10%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+ L A S K ++ DID+FK+ ND +GH +GD+V+ ++ ++ V Sbjct: 234 DDLTSLPTRRALNQLALSLGRKYTVAMLDIDHFKKFNDTYGHDIGDQVLKLVAAKMSGVK 293 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-------IIENSQ---------INI 210 G + R GGEEF + +++ LR+ +I N + Sbjct: 294 GGGK-IYRYGGEEFTVVFPRKTAEQSIPELETLRQNIATYDMVIRNPKRTDKKSRKGKQP 352 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S ++++T+S G+A+R K+ + AD ALY AKK GRN V Sbjct: 353 SDNKTVNVTVSIGVAQRTAKQTFDEALKNADLALYRAKKKGRNNV 397 >gi|300927855|ref|ZP_07143417.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] gi|300464140|gb|EFK27633.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] Length = 430 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|229521483|ref|ZP_04410902.1| GGDEF family protein [Vibrio cholerae TM 11079-80] gi|229341581|gb|EEO06584.1| GGDEF family protein [Vibrio cholerae TM 11079-80] Length = 358 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 18/198 (9%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 I+V+NL II T+ +L + +E I ++R+ + D L+G N F + Sbjct: 167 IVVQNLFFFIILGTMLMLF------LFEE--IEWHRLRSIQ--DELTGAFNRRHFKEQVQ 216 Query: 124 SYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 ++ + DID+FKQIND++GH +GD VI ++ L + T V R GGEE Sbjct: 217 KKLKQSKQKAMVALVDIDHFKQINDSYGHDIGDSVITYVVRHLESLALTECLVARYGGEE 276 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIY 238 FA A + + + + +R I + ++ P + ++I A I E H+ ++ Sbjct: 277 FAIFASENDFERVSQALDSVRDAI-SVGFHVEQQPLKLSVSIGAVIFESSHE--YGEVLR 333 Query: 239 RADQALYVAKKSGRNRVV 256 +AD+ALY AK+ GRNR++ Sbjct: 334 QADKALYQAKQQGRNRIM 351 >gi|90412493|ref|ZP_01220496.1| putative c-di-GMP phosphodiesterase A-related protein [Photobacterium profundum 3TCK] gi|90326530|gb|EAS42936.1| putative c-di-GMP phosphodiesterase A-related protein [Photobacterium profundum 3TCK] Length = 679 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 17/182 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 E + ++ QL D L+GL N F + SL + L +++ DID FK IND+ GH Sbjct: 241 ENTVQQGQVEQLVHTDPLTGLYNRHGFSRRLESLITNETPLVMLYLDIDNFKNINDSLGH 300 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD+V+ +S +L + +G LGG+EF L E + A ++ I Sbjct: 301 HIGDRVLQEISQRLRRLLPENAIIGHLGGDEF-GIVLSEPEHDRA------GDLVAQQVI 353 Query: 209 NISSGP------SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 ++ + P S H+ S G ++ + ++ AD A+Y AK GRNR+V F++ Sbjct: 354 SLINQPFDLHHFSKHLACSIGMVSYPGNGNDARILLQNADTAMYEAKNRGRNRLVKFNEA 413 Query: 262 EN 263 N Sbjct: 414 MN 415 >gi|189500280|ref|YP_001959750.1| diguanylate cyclase [Chlorobium phaeobacteroides BS1] gi|189495721|gb|ACE04269.1| diguanylate cyclase [Chlorobium phaeobacteroides BS1] Length = 436 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 88/191 (46%), Gaps = 21/191 (10%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 + L ELFI D + L N+ F ++ ++EK+SI DID Sbjct: 254 VKNKKLDELFIK----------DEKTNLYNYRHFKDHLIVDVARAKRFDEKVSIAMIDID 303 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK ND GH GD V+ ++ + R GGEEFA + ++A + Sbjct: 304 RFKAYNDANGHVAGDIVLEKMARIIREECRESDIPARFGGEEFAVLFSRTDSRKAIEIVE 363 Query: 198 DLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254 LR +IE + P +T+SAGIA C + ++I AD+ALY AK +GRNR Sbjct: 364 RLRSVIEAEPFYHEKELPDGQLTVSAGIAT-CPDDAADWYSLINNADKALYRAKNTGRNR 422 Query: 255 VVCFSDIENNT 265 VV F ++ + Sbjct: 423 VVHFRELADQN 433 >gi|15642692|ref|NP_232325.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586618|ref|ZP_01676403.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121726689|ref|ZP_01679914.1| GGDEF family protein [Vibrio cholerae V52] gi|153821269|ref|ZP_01973936.1| GGDEF family protein [Vibrio cholerae B33] gi|227082813|ref|YP_002811364.1| GGDEF family protein [Vibrio cholerae M66-2] gi|229507255|ref|ZP_04396760.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229509823|ref|ZP_04399304.1| GGDEF family protein [Vibrio cholerae B33] gi|229516945|ref|ZP_04406391.1| GGDEF family protein [Vibrio cholerae RC9] gi|229606762|ref|YP_002877410.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254851233|ref|ZP_05240583.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255744343|ref|ZP_05418295.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262158547|ref|ZP_06029662.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|298500487|ref|ZP_07010291.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|9657293|gb|AAF95838.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549177|gb|EAX59210.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121630850|gb|EAX63232.1| GGDEF family protein [Vibrio cholerae V52] gi|126521201|gb|EAZ78424.1| GGDEF family protein [Vibrio cholerae B33] gi|227010701|gb|ACP06913.1| GGDEF family protein [Vibrio cholerae M66-2] gi|229346008|gb|EEO10980.1| GGDEF family protein [Vibrio cholerae RC9] gi|229353297|gb|EEO18236.1| GGDEF family protein [Vibrio cholerae B33] gi|229354760|gb|EEO19681.1| GGDEF family protein [Vibrio cholerae BX 330286] gi|229369417|gb|ACQ59840.1| GGDEF family protein [Vibrio cholerae MJ-1236] gi|254846938|gb|EET25352.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255737868|gb|EET93261.1| GGDEF family protein [Vibrio cholera CIRS 101] gi|262029708|gb|EEY48357.1| GGDEF family protein [Vibrio cholerae INDRE 91/1] gi|297540656|gb|EFH76713.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 312 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS + S+ID L+ L N F S + L ++ FDID+FKQIND +GHP GD Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L R GGEEF LA ++R +E+ + + Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRDYVESHTL-MWQ 264 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+SAG A H +++ ADQAL AK+ GRNRV+ Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309 >gi|312945977|gb|ADR26804.1| hypothetical protein NRG857_06880 [Escherichia coli O83:H1 str. NRG 857C] Length = 430 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|294139915|ref|YP_003555893.1| GGDEF domain-containing protein [Shewanella violacea DSS12] gi|293326384|dbj|BAJ01115.1| GGDEF domain protein [Shewanella violacea DSS12] Length = 518 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + + + L + DID+FK IND+FGH GDK Sbjct: 354 QKLNLLDTLTQLPNRAALEERMELEFRNYQRHKQPLWVAVADIDHFKTINDSFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF + + A L N +R+ +++ Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLIIPDVNATDIAQLLNRVREKVKSIPFKF-KN 472 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A+ + E I+ RAD ALY AK R+RV+ Sbjct: 473 QRITVTVSIGAAQIINNELINETFDRADAALYRAKHESRDRVI 515 >gi|260770462|ref|ZP_05879395.1| GGDEF family protein [Vibrio furnissii CIP 102972] gi|260615800|gb|EEX40986.1| GGDEF family protein [Vibrio furnissii CIP 102972] gi|315181532|gb|ADT88445.1| GGDEF family protein [Vibrio furnissii NCTC 11218] Length = 385 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 20/166 (12%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+ L A + K ++ D+D+FK ND++GH GD V+ ++ +L +V Sbjct: 215 DRLTQLPGRHALELDMRHLGRKFTVAMVDVDHFKSFNDSYGHETGDDVLKLVAARLRMVQ 274 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP--------- 214 G V R GGEEF G + ++A LR IE + N+ S P Sbjct: 275 GRAK-VYRYGGEEFTVLFKGKTAEQAMDYLELLRADIEAYDLVIRNLESRPKNDKDGAKQ 333 Query: 215 -------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 S++IT+S G+ + + + + ADQALY AKK+GRN Sbjct: 334 RSDSKRMSVNITVSIGLCDSTLQRDPNEALKFADQALYAAKKAGRN 379 >gi|222054925|ref|YP_002537287.1| diguanylate cyclase [Geobacter sp. FRC-32] gi|221564214|gb|ACM20186.1| diguanylate cyclase [Geobacter sp. FRC-32] Length = 418 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 26/225 (11%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITIS-------LLLGYISGSILKELFISYNRIS 101 F Y+ +T + E+I V S +++ + IS +++ ++G + K + + Sbjct: 197 FEIYVDVTKYRN-EHINVVVTSAIMLLLVISAVHVGALVVVRKLTGQLKK----VHAELE 251 Query: 102 QLSRIDCLSGLLNHSAFIS-----SLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDK 153 Q++ D L+G+ N +S ++ E + ++ D+DYFK +ND +GH VGD+ Sbjct: 252 QMAIKDELTGIFNRRHILSKANFKAISRQREGELTIGVLNMDVDYFKSVNDTYGHLVGDE 311 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ +S +L GR+GGEEF ++ E +A + + + ++ Sbjct: 312 VLKEISRRLTDSCRASDLAGRIGGEEFIVLLPDTAMTEIIAIAERIHRSVGEKPFHVEQ- 370 Query: 214 PSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRV 255 + +TIS G+A C ++ +S I RAD ALY AK GRNR+ Sbjct: 371 HDLAVTISVGVA--CTLPGEKDLSQAIRRADTALYRAKNMGRNRI 413 >gi|225163776|ref|ZP_03726075.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224801606|gb|EEG19903.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 306 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 84/160 (52%), Gaps = 10/160 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L E+ LS+V DID+FK IND GH GD V+ ++ Sbjct: 137 DTLTGLNNRHEFERLLADELERARLLGHPLSLVMCDIDHFKTINDTRGHAAGDAVLREVA 196 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L +GR GGEEFA G+ ++ A +A + + S I + P + +T Sbjct: 197 SRLRSALRASDRIGRFGGEEFAVLLAGADQEAARHIAVRMVAAVAASPITPAPFPGLSVT 256 Query: 220 ISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRVV 256 ISAG+A +P +T+ ADQALY AK +GRNRVV Sbjct: 257 ISAGVAGLRRPQPENTVAALFAAADQALYAAKHAGRNRVV 296 >gi|160875202|ref|YP_001554518.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195] gi|160860724|gb|ABX49258.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS195] gi|315267395|gb|ADT94248.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS678] Length = 749 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 9/162 (5%) Query: 107 DCLSGLLNHSAF---ISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +A I SL S S + D+D FKQ+ND GH GD ++ + Sbjct: 318 DSLTGLANRNALFKQIQSLITSDSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVVR 377 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 Q+ M RLGG+EFA G +++E A LA + K + + ++ G ++ + Sbjct: 378 QICECLNDTMMFARLGGDEFALLLPGIVNQKELAQLAETINKHVAKRYV-LADGKGVYSS 436 Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S GIA + ++ ADQA+Y++K +GRNR F++ Sbjct: 437 VSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478 >gi|54298644|ref|YP_125013.1| hypothetical protein lpp2708 [Legionella pneumophila str. Paris] gi|53752429|emb|CAH13861.1| hypothetical protein lpp2708 [Legionella pneumophila str. Paris] Length = 371 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 110/225 (48%), Gaps = 27/225 (12%) Query: 48 IFLFYIGLTPFYGL--EYIL-VENLS-LVIISITISLLLGYISGS-----ILKE----LF 94 +F FYI P Y + EY+ ++N + L I ++ ++L ++ + +LKE L Sbjct: 143 VFEFYI---PIYSISQEYVFFLDNTNHLFIFALIFTVLYHFLVQNSQYELLLKEQNYLLI 199 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147 + LS D L+ L N S F + L + E +++ F D+D FK IND +G Sbjct: 200 ADKEKFHYLSHHDSLTNLPNRSYFHAHLQTLLENTDTTKEAITLYFMDLDKFKPINDEYG 259 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+++ S +L F F+ RLGG+EF A + + A A LR E Q Sbjct: 260 HEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPHDQIA-EALTLRIEQEFEQ 318 Query: 208 INISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKS 250 + +G +IH TIS GIA R K ++ AD+A+Y K+ Sbjct: 319 PFVINGQTIHCTISVGIANYPRNAKNA-EDLLKWADKAMYYNKRK 362 >gi|331652391|ref|ZP_08353410.1| putative GGDEF domain protein [Escherichia coli M718] gi|331050669|gb|EGI22727.1| putative GGDEF domain protein [Escherichia coli M718] Length = 430 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|330940755|gb|EGH43753.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 525 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 23/181 (12%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144 EL I+ N + ++ D L+ L N F ++L S N+ ++I+ DID+FKQ ND Sbjct: 328 ELNIARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYND 387 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199 +GH GD + Q+ + G + R GGEEF + A LA + Sbjct: 388 TYGHLQGDDCLR----QVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAGALRLAEKI 443 Query: 200 RKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNR 254 R IE S I SS P ++IS+G+ AE+ K+ + + AD+ LY+AK GRNR Sbjct: 444 RSSIEASCIEHSSSPLGRLSISSGVVAINAAEK--KDEHTAALKEADRLLYLAKTKGRNR 501 Query: 255 V 255 V Sbjct: 502 V 502 >gi|330911205|gb|EGH39715.1| hypothetical protein ECAA86_01548 [Escherichia coli AA86] Length = 430 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|301647158|ref|ZP_07246979.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] gi|331641908|ref|ZP_08343043.1| putative GGDEF domain protein [Escherichia coli H736] gi|301074644|gb|EFK89450.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1] gi|331038706|gb|EGI10926.1| putative GGDEF domain protein [Escherichia coli H736] Length = 430 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|299066447|emb|CBJ37634.1| putative diguanylate cyclase (GGDEF domain) [Ralstonia solanacearum CMR15] Length = 533 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 18/188 (9%) Query: 84 YISGSILKELFISYNRIS--QLSRI------DCLSGLLNHSAFISSL---GSYNEKLSIV 132 YI LK + R++ +++R+ D L+GL N ++L ++ S V Sbjct: 328 YIEAHRLKRALLRGTRLTSTRMARLNLEALTDPLTGLYNRRGVANALRLHAGRHQPFSAV 387 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK+IND +GH VGD+V+ L+ + GR+GGEEF ++ A Sbjct: 388 TLDVDHFKRINDRYGHDVGDQVLRHLAALIREQARHGDITGRIGGEEFILLLPDATPDGA 447 Query: 193 AILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250 A LR +E P+ +T+S G+A + ++ +D ALY AK+ Sbjct: 448 FKTAERLRLAVE-----ARPNPTGQVVTVSLGVAHYPQSAGEVDAVLKLSDLALYQAKRD 502 Query: 251 GRNRVVCF 258 GRNR+V + Sbjct: 503 GRNRIVVY 510 >gi|265999096|ref|ZP_05464990.2| GGDEF domain-containing regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|263092193|gb|EEZ16490.1| GGDEF domain-containing regulatory protein [Brucella melitensis bv. 2 str. 63/9] Length = 240 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 23/229 (10%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97 IAT+I I+ G+ G++ V L +++ I++LLG S L+EL SY Sbjct: 21 IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMLLGVFWFSRLEELERSYR 76 Query: 98 ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148 N +++++ +D L+GLLN +FI + N+ +F D+DY KQIND +GH Sbjct: 77 TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 136 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204 P GD I ++ L + + R+GG+EF A G+ ++L++ LR ++ Sbjct: 137 PAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 196 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + N+ S +T+S G + ++ AD+ LY KKS R Sbjct: 197 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 240 >gi|222148419|ref|YP_002549376.1| GGDEF family protein [Agrobacterium vitis S4] gi|221735407|gb|ACM36370.1| GGDEF family protein [Agrobacterium vitis S4] Length = 413 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 73/156 (46%), Gaps = 4/156 (2%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 S ID L+G+LN AF S K + + D+D+FK IND GH GD + Sbjct: 225 SEIDMLTGVLNRRAFYERAQSQMHKNAGVLALIDLDHFKYINDAHGHAGGDAALCAFGKT 284 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 ++ M GRLGGEEFA + EA + LR+ + +I +TIS Sbjct: 285 MIEQLDANMVFGRLGGEEFALFMPQMTGGEALSFCDGLRQSVARLTTPWRDA-TITMTIS 343 Query: 222 AGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 G+ E + + RAD ALY AK GR+R + Sbjct: 344 IGMHEVVKAGADLDAVSLRADAALYQAKDQGRDRCI 379 >gi|270308545|ref|YP_003330603.1| GGDEF domain protein [Dehalococcoides sp. VS] gi|270154437|gb|ACZ62275.1| GGDEF domain protein [Dehalococcoides sp. VS] Length = 836 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 12/178 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y + + + D L+ L NH F I+ + S++ D+D FK ND +GH Sbjct: 459 YTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHL 518 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+++ L L + R GGEEFA G+ ++A +A +RK IE+ Sbjct: 519 AGDQLLRRLGKILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNIESK--- 575 Query: 210 ISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 SS + IT S G+A + + II +AD ALY +K++GRNR +D+ NN Sbjct: 576 -SSFRDMPITASLGMANWPNDGVMKEEIIAKADAALYRSKETGRNRTSLPADLNNNPT 632 >gi|148979980|ref|ZP_01815820.1| response regulator [Vibrionales bacterium SWAT-3] gi|145961503|gb|EDK26806.1| response regulator [Vibrionales bacterium SWAT-3] Length = 413 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 5/151 (3%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL N + E+ +I DID+FK++ND +GH GD V+ + + F Sbjct: 258 DALTGLWNRRYLFNQTCKGCEERNIAMMDIDFFKKVNDTYGHDGGDAVLIEVGQIIKQHF 317 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 + V R GGEEF + G EQ L + +R IE+ Q+ S I +T+S G+ + Sbjct: 318 KDDLPV-RFGGEEFCIQSCGPFEQFVEALES-MRDAIESHQVEHDS-QIIKVTMSIGVTD 374 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + I AD+ LY AK+ GRN++VC Sbjct: 375 LVG--SLDEQIKAADELLYTAKEQGRNQLVC 403 >gi|91226108|ref|ZP_01260998.1| GGDEF family protein [Vibrio alginolyticus 12G01] gi|91189342|gb|EAS75620.1| GGDEF family protein [Vibrio alginolyticus 12G01] Length = 386 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 22/173 (12%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 QL+ D L+ + + A L +K +I D+D+FK+ ND +GH GD V+ ++ + Sbjct: 210 QLAFTDSLTLIPSRRALDLDLKHMGKKFTIAMLDVDHFKKFNDTYGHDTGDDVLKMVASR 269 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI------------- 208 L G V R GGEEF G E + RK I ++ Sbjct: 270 LTKTPGGAK-VYRFGGEEFTIVFKGKYTDECKNFLEEARKSIAEYEMILRDEESRPENHK 328 Query: 209 --------NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 N S S+ +T S G+A+ + + +I AD+ALY AKK+GRN Sbjct: 329 QGQKRRGSNSSKRKSVFVTASFGVADSRNGQAPLDVIKSADEALYKAKKAGRN 381 >gi|189346760|ref|YP_001943289.1| diguanylate cyclase [Chlorobium limicola DSM 245] gi|189340907|gb|ACD90310.1| diguanylate cyclase [Chlorobium limicola DSM 245] Length = 419 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 9/183 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 K++ ++ +L D + L N+ F I ++K+S+ DID+FK N Sbjct: 233 KDIEAKNKKLDELYIRDEKTNLYNYRHFKEHLIMEIERSKRLDDKVSMAMIDIDHFKLYN 292 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+V+ L+ + T R GGEEFA + A +++ LR II Sbjct: 293 DENGHVAGDRVLEQLAGIIGNTCRTSDMPSRFGGEEFAVLFPRTGIDTAMQISDRLRMII 352 Query: 204 ENSQIN-ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 ++ PS +T+S GIA + T++ AD+ALY AK +GRNRV FS I Sbjct: 353 SAEPVDHEKKQPSGRLTVSIGIATFPDDAQDWYTLVNNADRALYQAKSAGRNRVTAFSTI 412 Query: 262 ENN 264 ++ Sbjct: 413 KSK 415 >gi|170759489|ref|YP_001788676.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch Maree] gi|169406478|gb|ACA54889.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch Maree] Length = 437 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 12/173 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144 E + + N+I +LS I L+ LN +F+ L N++ +SI+F D+DYFK ND Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGSFMEKLKDEFDDSKKNKRHISIIFIDVDYFKAYND 314 Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 N+GH GDKV+ + ++ V VGR GG+EF E ++A ++ K I Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNKVETSELKVIATEISKEI 374 Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +I S S + T+S G+A K E I +I AD+ALY +K++GR+ Sbjct: 375 NKLKIEREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYKSKENGRD 427 >gi|153833679|ref|ZP_01986346.1| ggdef family protein [Vibrio harveyi HY01] gi|148869958|gb|EDL68918.1| ggdef family protein [Vibrio harveyi HY01] Length = 374 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 9/188 (4%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEK 128 + ++L+L K+L + ++ LS D L+ L N + I +L + + Sbjct: 178 LKLNLVLEEKVDERTKQLSNANKQLEALSLTDSLTQLPNRRSAIKTLKKLWKDEDAKDLP 237 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L + D DYFKQ+ND GH GD V+ L+ L F + V RLGG+EF + Sbjct: 238 LVCIMIDADYFKQVNDTCGHEAGDLVLTELAQALKHYFRSDDIVCRLGGDEFFVICPDTG 297 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247 + +A +RK + + + S P +IS G+AER E + +I AD+ +Y+A Sbjct: 298 LEGGLHVAEAVRKQVSHMLVPTSFEP-WRGSISVGVAERRDNMETYTDLIRVADEGVYLA 356 Query: 248 KKSGRNRV 255 K++G+NRV Sbjct: 357 KQNGKNRV 364 >gi|83942939|ref|ZP_00955399.1| diguanylate cyclase, putative/response regulator [Sulfitobacter sp. EE-36] gi|83845947|gb|EAP83824.1| diguanylate cyclase, putative/response regulator [Sulfitobacter sp. EE-36] Length = 471 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 26/172 (15%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N +S + + L+++ DID+FK++ND FGH GD V+ + Sbjct: 296 DPLTGIYNRRHALSEVARLAVRTRRKGIPLAVMLADIDHFKRVNDAFGHASGDAVLVETA 355 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218 +L R+GGEEF G +E EA +A + + + I +S IH Sbjct: 356 RRLKSCLRPLDVAARIGGEEFLLILPGITEAEATRMAKRICEAYRTTPFTIPASAQPIHA 415 Query: 219 TISAGIAERCHKEP---------------ISTIIYRADQALYVAKKSGRNRV 255 TIS G+ C +P + +I RADQALY AK GR+RV Sbjct: 416 TISIGL---CTAQPETGDAFPAPLDASAIAAELIDRADQALYSAKHRGRDRV 464 >gi|315297171|gb|EFU56451.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3] Length = 430 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLALAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|225848925|ref|YP_002729089.1| signal transduction response regulator [Sulfurihydrogenibium azorense Az-Fu1] gi|225643532|gb|ACN98582.1| signal transduction response regulator [Sulfurihydrogenibium azorense Az-Fu1] Length = 442 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 76/164 (46%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ +D L+ + N + L +N LSI DID FK IND+FGH VGD Sbjct: 22 IYNLATLDFLTKIPNRRKLMMDLEKEILRAKRFNRPLSIALIDIDDFKIINDSFGHDVGD 81 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + D L VGR GGEEF +S A +RK IE S I + Sbjct: 82 LALLHVVDILKDSIRLTDIVGRYGGEEFLVIMPETSLDGTLKAAEKIRKNIEQSSF-IIN 140 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I T+S GIA H ++ AD LY AKK G+NRV Sbjct: 141 DTKIPFTVSIGIASTELHGYDSQLLLKAADLGLYKAKKEGKNRV 184 >gi|152982630|ref|YP_001355220.1| hypothetical protein mma_3530 [Janthinobacterium sp. Marseille] gi|151282707|gb|ABR91117.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 356 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 87/193 (45%), Gaps = 32/193 (16%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS--------------------- 130 ++ +Y + S D L+GLLN F N K S Sbjct: 144 VYRNYQSLLDYSERDSLTGLLNRKTFDEKFARMVNAKPSESVARDDEGREERRHHADVKS 203 Query: 131 --IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 + DID+FK++ND FGH GD+V+ +++ L F V R GGEEF ++ Sbjct: 204 QWLAVIDIDHFKRVNDQFGHLYGDEVLILVANVLRTSFRAQDRVFRFGGEEFVVLLRSAT 263 Query: 189 EQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVA 247 +A ++ R IE S P I IT+S G A + P+ I+ ADQALY A Sbjct: 264 LADAQMVFERFRTSIEQ-----HSFPQIGQITVSIGFASISQETPV-VILGHADQALYYA 317 Query: 248 KKSGRNRVVCFSD 260 K GRN+ VC+ D Sbjct: 318 KDHGRNQ-VCYYD 329 >gi|90420494|ref|ZP_01228401.1| conserved hypothetical protein with GGDEF domain [Aurantimonas manganoxydans SI85-9A1] gi|90335222|gb|EAS48975.1| conserved hypothetical protein with GGDEF domain [Aurantimonas manganoxydans SI85-9A1] Length = 280 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVG 151 + + + D L+G+LN F +++LG + L ++ D D+FK+IND GHP G Sbjct: 85 LQRAATTDRLTGVLNRPGFDTIIRRHMAALGDHQYAGLMLLIIDADHFKRINDRLGHPTG 144 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DK + ++ L VGRLGGEEFA + +S ++ +A LR I ++++S Sbjct: 145 DKALKAIAGALKRSMRGSDAVGRLGGEEFAISFPCTSLEQGKAVAERLRLSI--GKLSVS 202 Query: 212 SGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G S +++S G A + + AD LY +K++GRNR S Sbjct: 203 DGKQSARLSVSIGGAFYTTPQLFDRVYGAADVNLYHSKRTGRNRTTITS 251 >gi|83643082|ref|YP_431517.1| GGDEF domain-containing protein [Hahella chejuensis KCTC 2396] gi|83631125|gb|ABC27092.1| FOG: GGDEF domain [Hahella chejuensis KCTC 2396] Length = 307 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 10/171 (5%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L D ++ +LN + + Y E+ S + D D+F INDNFG G Sbjct: 137 RVKELIMYDPVTKVLNWRFAEERCTQMVKHCRRYKEEFSFLVLDGDHFIWINDNFGPEAG 196 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ + FL++ + V +GR GGE+F + A ++A +R++ E + Sbjct: 197 DEALIFLAETIKNVIREVDILGRYGGEKFVIGLPATDLNGAVVVAERIRQLFEQCK---P 253 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + + ++S G A+ E + I RA ALY A K GRNRV + E Sbjct: 254 TSYDVRYSVSIGCAQLIRNEDLHDTIKRATHALYRAIKGGRNRVAASKNHE 304 >gi|83310566|ref|YP_420830.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945407|dbj|BAE50271.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 634 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 13/171 (7%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R S LS D ++GL N ++++ L+++ D+D+FK +ND +GH G Sbjct: 459 RESSLS--DPMTGLNNRRFLEEYVDTLVANVHRRKSALTVMMLDLDHFKMVNDTYGHDAG 516 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ LS L V R GGEEF + + EA +A +R ++E + + Sbjct: 517 DAVLKALSKVLRQAVRASDLVIRFGGEEFLIVLVDTPSAEADQVAEKIRALVE--ALVVQ 574 Query: 212 SGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +G +I TIS G+++ + + AD ALY AK++GRNRVV F++ Sbjct: 575 TGTVTIRKTISIGLSDFPTDSDTFWQAVKFADVALYQAKENGRNRVVRFNE 625 >gi|330969610|gb|EGH69676.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 298 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 21/233 (9%) Query: 31 FSIFFSIFIATVIFIANIFL--FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG- 87 S+FF FI + A I+L + LT G++++ + + I+ +LL G ++ Sbjct: 45 MSVFFVKFIDYIAAAALIWLIMWQTDLTAV-GVDHVPL----FYVFLISSTLLGGCLNAT 99 Query: 88 --SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFK 140 S++ + + +R +LS D L+ N A ++ L + +K S+ F D+D+FK Sbjct: 100 FLSLIMQTMAARDRYQELSETDTLTHAPNRRALVAGLNTALASADKSSLWFAMLDLDHFK 159 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND GH VGD V+ + L G F GRLGGEEF ++ +A L Sbjct: 160 SINDTHGHDVGDNVLISFATLLKSTKGLISF-GRLGGEEFGVILSAANATDAIHALEGLL 218 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + ++ + + + SAG+A E I+ ++ AD+ LY AK+SGR Sbjct: 219 MLAQHDE-----AAQVPYSFSAGVASLSRVETINDLLKEADENLYYAKRSGRT 266 >gi|313106069|ref|ZP_07792327.1| hypothetical protein PA39016_000160006 [Pseudomonas aeruginosa 39016] gi|310878829|gb|EFQ37423.1| hypothetical protein PA39016_000160006 [Pseudomonas aeruginosa 39016] Length = 398 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 10/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL ++ L+ D L+GL N F ++ + + LS++ D+D+FK IN Sbjct: 213 QELEEKNRQLEYLAGHDPLTGLFNRREFDQLVLMELARIARQPQPLSLLMVDLDHFKYIN 272 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GHP GD+VI ++ L + V RLGGEEF ++EQ+A LA LR+ + Sbjct: 273 DRYGHPFGDEVIRHAANLLRGNTRSSDSVARLGGEEFLLLLPDTAEQQARSLAEKLRERL 332 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E + + G + +T S G+A + + + ADQALY AK SGRNRV Sbjct: 333 EGTPLATQDG-VLCLTASFGVASLDGGGQASYEQLYSAADQALYRAKSSGRNRV 385 >gi|311105518|ref|YP_003978371.1| diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310760207|gb|ADP15656.1| diguanylate cyclase, GGDEF domain protein 11 [Achromobacter xylosoxidans A8] Length = 403 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV--VVFGTPMFVGRLGGEEFAAAAL 185 KL+++ DID+FK IND +GH GD + S Q+V V G+ F GRLGGEEF Sbjct: 251 KLAVLVLDIDHFKSINDRYGHASGDAALRHFS-QVVQRAVRGSDRF-GRLGGEEFVLLMY 308 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 A + A + + ++ ++ G + +T S G+A + I+ RAD ALY Sbjct: 309 DCDPARALVQAQRVCDALRDTPFHL-QGREVRMTTSGGLASYQSGDSADGILARADDALY 367 Query: 246 VAKKSGRNRV 255 AK+ GR+RV Sbjct: 368 RAKEHGRDRV 377 >gi|317153199|ref|YP_004121247.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316943450|gb|ADU62501.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 277 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 20/181 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 L++ + R++ + D L+GL N AF +L E+ LS+ FD+D FK+I Sbjct: 73 LRQFQATLERLAYQTDHDPLTGLANRRAFDRTLEIEVERSRRAKTPLSLALFDLDDFKRI 132 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GHP GD+V+ + ++ R GGEEFA GS +A L R + Sbjct: 133 NDTYGHPKGDEVLIAFARRVSETTRRYDLAARFGGEEFALVMAGSGVVKAQRLLE--RLL 190 Query: 203 IENSQINISSGPSIH---ITISAGIAERCHK-----EPISTIIYRADQALYVAKKSGRNR 254 E Q+ ++ H +T S G+ C K EP+ ++ AD ALY AK +G+++ Sbjct: 191 SEFRQMEFTAPDGSHTFSVTCSVGLT--CFKGTVDLEPVE-LVQMADDALYEAKNAGKDQ 247 Query: 255 V 255 + Sbjct: 248 I 248 >gi|302879164|ref|YP_003847728.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302581953|gb|ADL55964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 935 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 19/174 (10%) Query: 99 RISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 RI+ L+ D L+GL N AF SS N K++++F D+DYFK IND+ GH + Sbjct: 505 RINYLANYDVLTGLPNRYLLSDRIEQAF-SSAQRNNFKVAVLFIDLDYFKNINDSLGHDI 563 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIEN--- 205 GD ++ ++ +L + RLGG+EF A + L SSE+ + + + E Sbjct: 564 GDALLKLVAARLKTCLRRSDTIARLGGDEFVALLSELDSSEEVIFVAEKMIESLTEKFTL 623 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +S PSI I I E + ++ AD A+Y AK GRN +S Sbjct: 624 GEYQLSITPSIGICIYPDDGETSVE-----LLRNADLAMYQAKDDGRNNFKFYS 672 >gi|239928916|ref|ZP_04685869.1| hypothetical protein SghaA1_11897 [Streptomyces ghanaensis ATCC 14672] gi|291437243|ref|ZP_06576633.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291340138|gb|EFE67094.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 204 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 22/188 (11%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNE 127 +L I S + L G + +++ L +R D L+GL F + Sbjct: 5 ALAIASAVLGLAWGAHTVWMVRRL--------HRARRDPLTGLWTREGFTRRARRLLRDG 56 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-- 185 + +V D+D FKQ+ND FGH GD ++A + +L G GRLGG+EFAA + Sbjct: 57 RAVVVLADVDRFKQVNDTFGHAAGDALLAATATRLAHGVGRGGVAGRLGGDEFAAVFVDR 116 Query: 186 -GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPISTIIYRADQ 242 G++ + LA+ L + ++ S P +H T+S G R E +S ++ RAD+ Sbjct: 117 DGTALERLDTLAHILARPVD-------SLPEVHTTVSLGWVRRADHADEDLSGLLRRADE 169 Query: 243 ALYVAKKS 250 A+Y AK+S Sbjct: 170 AMYAAKRS 177 >gi|192289266|ref|YP_001989871.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris TIE-1] gi|192283015|gb|ACE99395.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris TIE-1] Length = 313 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 20/175 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFKQINDNFGHP 149 + Q + D L+GL N + F Y E +S +V D+D FK++ND GH Sbjct: 138 LRQQAETDPLTGLANRARFQER---YREVVSDRLHHGFASALVLIDLDGFKELNDTLGHL 194 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQ 207 GD + ++ +L F + + RLGG+EFA S+E+ A +L R I+ S+ Sbjct: 195 AGDACLCEVAQRLRRAFNSAGLISRLGGDEFAIILRTPTSAERIADVL---RRTIVMLSR 251 Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +G I ++ S G A R H+ I+ + AD ALY AK +GRNRV D Sbjct: 252 PLFWNGHRIKVSASIGAALIGRPHQRRIADLFAEADLALYQAKAAGRNRVSLIGD 306 >gi|254285887|ref|ZP_04960849.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|150424069|gb|EDN16008.1| GGDEF family protein [Vibrio cholerae AM-19226] Length = 312 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS + S+ID L+ L N F S + L ++ FDID+FKQIND +GHP GD Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L R GGEEF LA ++R +E+ + + Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRDYVESHTL-MWQ 264 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+SAG A H +++ ADQAL AK+ GRNRV+ Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309 >gi|119487299|ref|ZP_01621050.1| hypothetical protein L8106_21282 [Lyngbya sp. PCC 8106] gi|119455854|gb|EAW36989.1| hypothetical protein L8106_21282 [Lyngbya sp. PCC 8106] Length = 965 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 4/130 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L + FDID+FK IND +GH GD + S+ + + GRLGGEEF A S Sbjct: 832 LLCMMFDIDHFKLINDQYGHKAGDIALIAFSEIVSKNLRSNDIFGRLGGEEFLAVVPEIS 891 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALY 245 + LA +R +E + I + + I +T+S GI+ + + ++T +I +D+ALY Sbjct: 892 LEAGKKLAERIRLEVEKTPITVGAD-CITMTVSIGISMYKNNKNLATFDELIELSDKALY 950 Query: 246 VAKKSGRNRV 255 AK SGRNRV Sbjct: 951 TAKNSGRNRV 960 >gi|87199456|ref|YP_496713.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Novosphingobium aromaticivorans DSM 12444] gi|87135137|gb|ABD25879.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Novosphingobium aromaticivorans DSM 12444] Length = 896 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 62/178 (34%), Positives = 84/178 (47%), Gaps = 11/178 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138 SG+ L E S S+L+ D L+GL N +L + ++ D+D Sbjct: 336 SGTDLTEKRRSQEHASRLAHFDSLTGLSNRFRMSQTLEKILLAPQVQHRACAVFLLDLDR 395 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FKQ+ND GHP GD ++ ++ +L V G VGRLGG+EF G E+ L + Sbjct: 396 FKQVNDTLGHPAGDALLKQVAQRLERVVGKIGRVGRLGGDEFEVILPGKMER--GQLGHM 453 Query: 199 LRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254 +IIE+ SQ G + I S GIA S + R AD ALY AK GR R Sbjct: 454 AGRIIESLSQPYSIEGSRVMIGASVGIALAPDDGVTSEALIRNADLALYAAKDGGRGR 511 >gi|319783753|ref|YP_004143229.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169641|gb|ADV13179.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 383 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 15/199 (7%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-----S 120 E LSL+I+ +++ + G +S ++ + ++R + L+ D L+GLLN A + Sbjct: 186 AEELSLIIVIASMTGI-GALSLALNQGRLARHHRHNALT--DPLTGLLNRRALFDLHGDA 242 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 +G++ ++V FD+D FK IND FGH GD+V+ + +L R+GGEEF Sbjct: 243 PVGAFT---AVVVFDLDNFKAINDEFGHAAGDEVLRVFARELASNRRPADVAARMGGEEF 299 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIY 238 A + + A +R +I +G S+ T+SAG A KE + ++ Sbjct: 300 ALVLKRTLPETVEATAEAIRAAFAAHRIETETG-SLICTVSAGFAFGT-KEGLGFDKVLN 357 Query: 239 RADQALYVAKKSGRNRVVC 257 AD+ALY AK+ GRNRV Sbjct: 358 AADKALYDAKRGGRNRVTA 376 >gi|262402983|ref|ZP_06079543.1| hypothetical protein VOA_000964 [Vibrio sp. RC586] gi|262350482|gb|EEY99615.1| hypothetical protein VOA_000964 [Vibrio sp. RC586] Length = 314 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 19/174 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D LS L N F L +N+ L++ DID FK+ ND+FGH GD Sbjct: 135 LDKMAHTDSLSNLANRLTFDEQLDVEFRRSRRHNDPLTVALIDIDEFKKFNDHFGHIAGD 194 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + I ++ L + P R GGEEFA + E+ A + N+L K +E Q+ I+ Sbjct: 195 ECIRKIAHALRSITKRPADLAARYGGEEFALILPSTEEEGAKSMVNELIKAVE--QLEIA 252 Query: 212 SGPSIH---ITISAG----IAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 P +T+S G E+ E + + AD+ALY +K +GRN+ Sbjct: 253 HSPEAMNQCVTVSVGYTVLYPEQVDFEQMKAVDVAQTADKALYTSKHNGRNQAT 306 >gi|260434152|ref|ZP_05788123.1| response regulator receiver modulated diguanylate cyclase [Silicibacter lacuscaerulensis ITI-1157] gi|260417980|gb|EEX11239.1| response regulator receiver modulated diguanylate cyclase [Silicibacter lacuscaerulensis ITI-1157] Length = 467 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 16/165 (9%) Query: 106 IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+GL N +S+L + +I+ D+D+FK IND +GH VGD+V+ Sbjct: 297 IDPLTGLNNRRYALSALDRMMTRATRKGQSFAIMLADLDHFKSINDRYGHSVGDQVLVEA 356 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IH 217 + ++ FG F+ R+GGEEF A + + A A + +++ S + + P+ + Sbjct: 357 AKRMRRAFGNEGFLARIGGEEFLFALPDADHRTARAKAERICQLMAASPFVMPTIPTRLT 416 Query: 218 ITISAGIAE-----RCHKEPIST---IIYRADQALYVAKKSGRNR 254 +T+S G+ +C E T ++ AD+ALY AKK+GRN+ Sbjct: 417 VTVSVGLKLCEPPFQCLGEDGCTAPELVNCADRALYAAKKAGRNQ 461 >gi|237653888|ref|YP_002890202.1| response regulator receiver modulated diguanylate cyclase [Thauera sp. MZ1T] gi|237625135|gb|ACR01825.1| response regulator receiver modulated diguanylate cyclase [Thauera sp. MZ1T] Length = 642 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 9/170 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL IS R+ + + D L+GL N I ++ + + S++ D+D FK IND Sbjct: 462 ELSISNRRLQEAALTDPLTGLPNRRRAIEAMEAEWATATRHGRAFSVMIVDLDGFKTIND 521 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH VGD + + L + R GG+EF + + A ++A LR ++ Sbjct: 522 THGHDVGDMALRQAAATLRGALRAQDLICRTGGDEFLVLCPDTDLKAAMLVAERLRVAVQ 581 Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 S + + GP I +T S G+A R + +I AD ++Y AK+ GRN Sbjct: 582 ASPVE-TGGPQIFLTASVGVAMRVPAMGSVDALIKCADDSVYRAKQRGRN 630 >gi|222109892|ref|YP_002552156.1| diguanylate cyclase [Acidovorax ebreus TPSY] gi|221729336|gb|ACM32156.1| diguanylate cyclase [Acidovorax ebreus TPSY] Length = 388 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Query: 107 DCLSGLLNHSAFIS--SLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N A + L + L D+D+FK++ND+ GH +GD V+ + Sbjct: 211 DELTGLYNRRAMVELIQLECRRRRRGQGALLFAMIDVDHFKRVNDHHGHAMGDHVLRVFA 270 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D L + R GG+EF + A L R+ I + ++ P + ++ Sbjct: 271 DALRANVRETDVLARWGGDEFLLLLSDIEPRSAQTLLERTREAIAALPVP-NAPPDLRLS 329 Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +SAG+A H P T+ RADQALY AK GRNRV +++ Sbjct: 330 MSAGLALHLPHSSPQETL-ERADQALYAAKDQGRNRVALAPELQ 372 >gi|218441976|ref|YP_002380305.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] gi|218174704|gb|ACK73437.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] Length = 465 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 13/168 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QL+R+D L+G+ N F +L + LS++ DIDYFK ND +GH G Sbjct: 278 KLHQLARLDGLTGVANRRYFEETLAKEWKRGIRDKQPLSLILCDIDYFKIYNDTYGHLKG 337 Query: 152 DKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-- 208 D+ + ++ + V + V R GGEEF + Q A +A ++K + +I Sbjct: 338 DECLIRVAKAINRAVKRSTDLVARYGGEEFGIILTNTERQGAIAIAQSIQKAVNQLKIPH 397 Query: 209 -NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253 N +I +S G+A ++ +S ++ AD+ALY AKK GRN Sbjct: 398 PNPREKNHHYIAMSLGVASLIPQKKLSPKILVASADKALYEAKKQGRN 445 >gi|119775582|ref|YP_928322.1| sensory box protein [Shewanella amazonensis SB2B] gi|119768082|gb|ABM00653.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella amazonensis SB2B] Length = 1036 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 18/150 (12%) Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 IS N + +++F D+D+FK++ND GH +GDK++ +D++ V RLGG+ Sbjct: 603 ISLASRQNVRFALLFLDLDFFKEVNDTLGHDMGDKLLIECADRIKACIRDSDVVARLGGD 662 Query: 179 EFAAAA-----LGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEP 232 EF +G E+ A +N L+ I E Q+ GP S +I++S GI E Sbjct: 663 EFTVLIRDIHDVGGVERAA---SNILKAIAEPFQL----GPDSAYISVSIGIT--LFPED 713 Query: 233 IST---IIYRADQALYVAKKSGRNRVVCFS 259 ST ++ ADQA+Y AK+ GRNR F+ Sbjct: 714 ASTREALLKNADQAMYAAKEQGRNRFNYFT 743 >gi|332982919|ref|YP_004464360.1| diguanylate cyclase [Mahella australiensis 50-1 BON] gi|332700597|gb|AEE97538.1| diguanylate cyclase [Mahella australiensis 50-1 BON] Length = 560 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 18/184 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL + + +LS D L+GL N + L Y + LS + D+D+FK +ND Sbjct: 378 ELIEKNSLLERLSITDALTGLYNRGYMTNRLAGDLSYSLRYGQPLSCLMMDLDFFKAVND 437 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD V+ L+ + + V R GGEEF + A +L +R+ + Sbjct: 438 MYGHQAGDLVLKQLAQIISMNVRKSDVVIRYGGEEFLVICPNTDGNGAIMLGERIRQAVR 497 Query: 205 NSQINISS-GPSIHITISAGIAERC---HK-----EPISTIIYRADQALYVAKKSGRNRV 255 +IS+ G I +TIS G A C H + II +AD ALY+AK GR+ V Sbjct: 498 EHDFDISNGGKRIRMTISIGAA--CIEPHDIKDIVQAERDIIAQADSALYMAKGDGRDNV 555 Query: 256 VCFS 259 F+ Sbjct: 556 KLFA 559 >gi|300957940|ref|ZP_07170109.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1] gi|300315379|gb|EFJ65163.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1] Length = 357 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 12/166 (7%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---- 124 LSL II I LL G++S +L R+ +S D ++G+ N + + L + Sbjct: 176 LSLPIIVI-YPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDN 234 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 +N +++ DID+FK IND +GH VGD+ I L+ QL + +GR GG+EFA Sbjct: 235 CRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFA 294 Query: 182 AAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAE 226 G+ E+AI A + ++ E + + + + P + + IS G+A Sbjct: 295 VIMSGTPA-ESAITA--MLRVHEGLNTLRLPNTPQVTLRISVGVAP 337 >gi|281178532|dbj|BAI54862.1| conserved hypothetical protein [Escherichia coli SE15] Length = 430 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|242238666|ref|YP_002986847.1| diguanylate cyclase [Dickeya dadantii Ech703] gi|242130723|gb|ACS85025.1| diguanylate cyclase [Dickeya dadantii Ech703] Length = 519 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 29/221 (13%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFIS----------------YNRISQ-LSRID 107 L+ENL +++++ + + ++ +LK++ ++ NR+ Q L+ +D Sbjct: 297 LMENLPAMLLNVFVLFPILFMGALVLKQIRLTVRNKDVLTRLHQEETDKNRVLQKLALVD 356 Query: 108 CLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+ L N F S L EK LS++ D+D+FK ND +GH GD+ ++ + Sbjct: 357 PLTRLANRRRFDSYLEQSLEKMRDEGKVLSLIMMDVDFFKYFNDTYGHVRGDRCLSQIGS 416 Query: 161 QLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG--PSIH 217 L+ V+ + R GGEEFA + ++A +L + + I I P Sbjct: 417 VLLGRVWPSGALPARYGGEEFAVILPNVTGEQAELLGAQVVEAIRACAIPHQESLLPDHI 476 Query: 218 ITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+ P + + ADQALY+AKK GRN+ V Sbjct: 477 VTVSVGVYSFSSANPCDVQRLKDGADQALYLAKKKGRNQCV 517 >gi|254225422|ref|ZP_04919033.1| GGDEF family protein [Vibrio cholerae V51] gi|125622056|gb|EAZ50379.1| GGDEF family protein [Vibrio cholerae V51] Length = 312 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 16/171 (9%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGH 148 IS + S+ID L+ L N F + ++E L ++ FDID+FKQIND +GH Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFT----WSEPIVPETLLGLIIFDIDHFKQINDTYGH 201 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 P GD V+ ++ L R GGEEF LA ++R +E+ + Sbjct: 202 PAGDYVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVVGLAENIRGYVESHTL 261 Query: 209 NISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G I +T+SAG A H +++ ADQAL AK+ GRNRV+ Sbjct: 262 -MWQGQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309 >gi|82544203|ref|YP_408150.1| hypothetical protein SBO_1720 [Shigella boydii Sb227] gi|193062480|ref|ZP_03043574.1| sensory box-containing diguanylate cyclase [Escherichia coli E22] gi|209918586|ref|YP_002292670.1| hypothetical protein ECSE_1395 [Escherichia coli SE11] gi|300818938|ref|ZP_07099142.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] gi|300904993|ref|ZP_07122811.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|301305843|ref|ZP_07211928.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1] gi|306813634|ref|ZP_07447815.1| hypothetical protein ECNC101_17017 [Escherichia coli NC101] gi|81245614|gb|ABB66322.1| conserved hypothetical protein [Shigella boydii Sb227] gi|192931602|gb|EDV84202.1| sensory box-containing diguanylate cyclase [Escherichia coli E22] gi|209911845|dbj|BAG76919.1| conserved hypothetical protein [Escherichia coli SE11] gi|300403142|gb|EFJ86680.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1] gi|300528399|gb|EFK49461.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1] gi|300838933|gb|EFK66693.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1] gi|305852908|gb|EFM53353.1| hypothetical protein ECNC101_17017 [Escherichia coli NC101] gi|315254383|gb|EFU34351.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1] gi|320199382|gb|EFW73973.1| hypothetical protein ECoL_03482 [Escherichia coli EC4100B] gi|323153513|gb|EFZ39766.1| sensory box protein [Escherichia coli EPECa14] gi|323179695|gb|EFZ65256.1| hypothetical protein ECOK1180_1440 [Escherichia coli 1180] gi|323187575|gb|EFZ72884.1| hypothetical protein ECRN5871_4400 [Escherichia coli RN587/1] gi|324021222|gb|EGB90441.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3] gi|332094922|gb|EGI99962.1| hypothetical protein SB359474_1973 [Shigella boydii 3594-74] Length = 430 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|56419574|ref|YP_146892.1| hypothetical protein GK1039 [Geobacillus kaustophilus HTA426] gi|56379416|dbj|BAD75324.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 588 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 18/187 (9%) Query: 85 ISGSILKELFISYNRISQLSR-------IDCLSGLLN-------HSAFISSLGSYNEKLS 130 I+ ELF+ R+ + R ID L+G+ N ++ S L Y Sbjct: 251 ITTPAADELFVRVRRLIEKKRKIDDLVLIDELTGVYNRKYLPRVYARLRSDLERYGAPSC 310 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + D+D+FKQ+ND FGH GD V+ L+ L V R GGEEF +S+ Sbjct: 311 LALLDLDHFKQVNDRFGHLAGDAVLQKLAAFLRQHTRGVDTVVRFGGEEFVVWLAKTSKS 370 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAK 248 EA + L++ +I + G + T SAG+ E C + P+ + AD+ALY AK Sbjct: 371 EARAVLERLQRQFAAEKIE-ADGALLSCTFSAGLVE-CDEPDRPLDYWLRLADKALYAAK 428 Query: 249 KSGRNRV 255 + G NR+ Sbjct: 429 RGGGNRI 435 >gi|39933844|ref|NP_946120.1| diguanylate cyclase [Rhodopseudomonas palustris CGA009] gi|39647691|emb|CAE26211.1| putative diguanylate cyclase (GGDEF) with PAS/PAC domain [Rhodopseudomonas palustris CGA009] Length = 313 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 20/175 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFKQINDNFGHP 149 + Q + D L+GL N + F Y E +S +V D+D FK++ND GH Sbjct: 138 LRQQAETDPLTGLANRARFQER---YREVVSDRLHHGFASALVLIDLDGFKELNDTLGHL 194 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQ 207 GD + ++ +L F + + RLGG+EFA S+E+ A +L R I+ S+ Sbjct: 195 AGDACLCEVAQRLRRAFNSAGLISRLGGDEFAIILRTPTSAERIADVL---RRTIVMLSR 251 Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +G I ++ S G A R H+ I+ + AD ALY AK +GRNRV D Sbjct: 252 PLFWNGHRIKVSASIGAALIGRPHQRRIADLFAEADLALYQAKAAGRNRVSLIGD 306 >gi|330808444|ref|YP_004352906.1| diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376552|gb|AEA67902.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 794 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 14/206 (6%) Query: 57 PFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS 116 P GL ++ E + + L GYIS + +L + LS D L+G+ N Sbjct: 591 PLRGLRWVRGEATPEELPGGGV-LWHGYISD--ISDLKRVEEELRALSVTDALTGIRNRR 647 Query: 117 AFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F L S + L+++ DID+FK+IND GH VGD+V+ + ++ Sbjct: 648 YFQDRLTSEMARVERGSGGLAVIMLDIDHFKRINDQHGHAVGDRVLQAVCQRVGQRLRRT 707 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 RLGGEEF + + A LA +L + + + I +T S GIA Sbjct: 708 DVFCRLGGEEFVVLCPDTDSESAYTLALELWEGLRAAPIEGVG----FVTASFGIATWRI 763 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 E ++ RAD +Y AK++GR+RV Sbjct: 764 GEGADALLLRADSGVYAAKQAGRDRV 789 >gi|269104840|ref|ZP_06157536.1| hypothetical protein VDA_000997 [Photobacterium damselae subsp. damselae CIP 102761] gi|268161480|gb|EEZ39977.1| hypothetical protein VDA_000997 [Photobacterium damselae subsp. damselae CIP 102761] Length = 719 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 13/182 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL R++ LSR D L+ L N I+ + L+ + DID++K N Sbjct: 530 QELEAVNQRLNTLSRYDALTQLFNRYELDTIAPNLINEAQKQQKSLTCLMIDIDFYKTFN 589 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D++GH GDKV+ ++ + F F R GG+EF A S+++ L++ Sbjct: 590 DHYGHQQGDKVLRLVAKFIHQAFSEQQDFAFRYGGDEFLLLAFNQSQEQIQTKVEQLQQY 649 Query: 203 IENSQINIS-SGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +E I S S +T+S G + + ++I++ DQALY AK+ RNR V Sbjct: 650 LEQENIEHHYSQCSERLTLSIGSYTWQPDSFDDLTVESLIHQTDQALYFAKQKHRNRYVT 709 Query: 258 FS 259 + Sbjct: 710 YQ 711 >gi|255307261|ref|ZP_05351432.1| putative signaling protein [Clostridium difficile ATCC 43255] Length = 391 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 110/245 (44%), Gaps = 30/245 (12%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFIS 96 F +VI FLF P G++ I S ++ + I+ L ++S + + +F Sbjct: 147 FGESVIVFGGCFLFLNLFLP--GIQTIPGNEFSNIVNTFFITSLAIFVSTMLYRNRVFTY 204 Query: 97 YNRI---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFF 134 Y+++ Q I ++ LLN L N E ++ + Sbjct: 205 YDKLLISQQYEEISHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMI 264 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEA 192 DIDYFKQ NDN+GH GD + ++ ++++ F + R GGEEF +E +A Sbjct: 265 DIDYFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCNEADA 323 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKS 250 + + LRKIIE+ P +T+S G+ + + I+ I D+ALY AK+ Sbjct: 324 KLKSECLRKIIESCNFERDDVPLKCVTVSIGVYTKKIGKTITLNEFISNCDKALYTAKEQ 383 Query: 251 GRNRV 255 GRN V Sbjct: 384 GRNCV 388 >gi|189403875|ref|ZP_02785789.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4501] gi|189368709|gb|EDU87125.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4501] gi|320659635|gb|EFX27198.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7 str. USDA 5905] Length = 476 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 429 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 465 >gi|301017564|ref|ZP_07182238.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] gi|300400058|gb|EFJ83596.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1] Length = 430 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCTLA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|237731698|ref|ZP_04562179.1| RNase II stability modulator [Citrobacter sp. 30_2] gi|226907237|gb|EEH93155.1| RNase II stability modulator [Citrobacter sp. 30_2] Length = 663 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 18/185 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 SG+ + E + R+ L+ D ++GL N +A I + G + ++ IV+ D+D Sbjct: 219 SGTDITEERRAQERLRMLANTDSITGLPNRNAIHELISDAIENAG--DTQVGIVYLDLDN 276 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAI 194 FK++ND +GH GD+++ +S ++ + R GG+EF A +S E A+ Sbjct: 277 FKKVNDAYGHMFGDQLLQSVSLAILSCLDDNQLLARFGGDEFIVLATETSQSTLEATASR 336 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + LR+ I + +G SI I+++ + C ++I AD A+Y AK+ GR + Sbjct: 337 ILTRLRQPFRIGLIEVYTGCSIGISLAPQHGQDCE-----SVIRNADTAMYTAKEGGRGQ 391 Query: 255 VVCFS 259 FS Sbjct: 392 FCVFS 396 >gi|226950798|ref|YP_002805889.1| putative diguanylate cyclase [Clostridium botulinum A2 str. Kyoto] gi|226842978|gb|ACO85644.1| putative diguanylate cyclase [Clostridium botulinum A2 str. Kyoto] Length = 437 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 91/173 (52%), Gaps = 12/173 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144 E + + N+I +LS I L+ LN F+ L N++ +SIVF D+DYFK ND Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGNFMEKLKDEFDDSKKNKRHISIVFIDVDYFKAYND 314 Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 N+GH GDKV+ + ++ V VGR GG+EF E ++A ++ K I Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEVIAMEISKEI 374 Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +I S S + T+S G+A K E I +I AD+ALY +K++GRN Sbjct: 375 NKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYKSKENGRN 427 >gi|168215416|ref|ZP_02641041.1| GGDEF domain protein [Clostridium perfringens NCTC 8239] gi|182382033|gb|EDT79512.1| GGDEF domain protein [Clostridium perfringens NCTC 8239] Length = 299 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 4/129 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSS 188 +++ DID FK++ND GH VGDK++ + L + ++GR GGEEF ++ Sbjct: 172 TVIMADIDSFKKVNDTCGHLVGDKILRDFAKALNNNIRENSDWIGRYGGEEFIIVLNNTN 231 Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247 + +A LRKIIE +++ G S+ IT S G+ E KE I AD+ LY+A Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289 Query: 248 KKSGRNRVV 256 K +GRN+ V Sbjct: 290 KMTGRNKTV 298 >gi|148258166|ref|YP_001242751.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] gi|146410339|gb|ABQ38845.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] Length = 502 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 21/175 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ QL+ D L+GL N F ++ ++ L ++ D D+FK NDN GH Sbjct: 324 TRLEQLATTDPLTGLKNRRKFDETIEVEWRRALRHHAPLGLLMIDADHFKSYNDNHGHQA 383 Query: 151 GDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD+V+ ++ V + + G R GGEEFA G+S+ +A +A +R + Sbjct: 384 GDQVLVGIA---VCISDSVRRAGDCAARYGGEEFAVLLPGTSDADALHVAETIR-----T 435 Query: 207 QINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ I +G + + ++S G+A + ++ AD+ALY+AK +GRNR V + Sbjct: 436 KVAIWAGEAGNTSVSIGVASITPSRDTDWTALMNAADRALYMAKAAGRNRCVAAT 490 >gi|91975244|ref|YP_567903.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91681700|gb|ABE38002.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB5] Length = 905 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +I+ L+ D L+ L N S F L ++++ DID FK IND GHPVGD Sbjct: 474 KIAYLAHYDSLTDLPNRSLFRQRLERKLEGAQRGASFALLYIDIDEFKSINDTLGHPVGD 533 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINIS 211 +++ ++ +L G FV RLGG+EFA G+ + + A +A + + I + Sbjct: 534 ELLKQVAVRLQACVGEDEFVARLGGDEFAIVTNGAGDSDQATEMAERILQAIRTPYQCLG 593 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 S +I IA R + I ++ AD A+Y AK GR Sbjct: 594 HRLSTDASIGIAIAPR-DGDDIDQLVKNADLAMYGAKAHGR 633 >gi|327189763|gb|EGE56907.1| sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 542 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140 +I +L + R+ L+ D L+GL N F +L S L+++ D+D FK Sbjct: 360 AIEDQLQEANRRLQALAEQDALTGLANRRYFDEALLREHAHALSQRTNLALLIIDVDRFK 419 Query: 141 QINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND +GHP GD+ + + + + R GGEEFA G+ EAA +A + Sbjct: 420 SFNDRYGHPSGDECLKRIGGAIKDTIRRAGDVAARYGGEEFAVLLPGADGSEAASVAELI 479 Query: 200 RKIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNR 254 R + + I + P+ TIS G+ C E ++ AD+ALY AK+ GRN Sbjct: 480 RLAVLHLGIEHEASPNGIATISVGVTGLTGDSSCGPE---ALVREADRALYRAKERGRNT 536 Query: 255 VVCFSD 260 VV D Sbjct: 537 VVIAHD 542 >gi|325920711|ref|ZP_08182617.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] gi|325548763|gb|EGD19711.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] Length = 804 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 9/171 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 + +S +R D L+GL+N L E ++ F D+D+FK +ND FGH V Sbjct: 366 DEVSFHARHDALTGLINRHEIERRLLRLIEPPQSPQLCHALCFVDLDHFKLVNDTFGHAV 425 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDK + +D + + ++GRLGG+EFA + +A L + ++ + Sbjct: 426 GDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDLLQAQALLTHMHGVLGQPWSH- 484 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + + S G+ E R ++ ++ AD A Y AK+ GRNR+ CF + Sbjct: 485 QGGKPLTPSCSFGVVEIRQGASDLNALMTAADLACYAAKEEGRNRIRCFDE 535 >gi|323964516|gb|EGB59991.1| GGDEF domain-containing protein [Escherichia coli M863] gi|327254035|gb|EGE65664.1| hypothetical protein ECSTEC7V_1466 [Escherichia coli STEC_7v] Length = 410 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVTKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|320653792|gb|EFX21866.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 476 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 429 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 465 >gi|300693354|ref|YP_003749327.1| modulator of rnase ii stability, signal transduction protein eal-ggdef domains (gmr) [Ralstonia solanacearum PSI07] gi|299075391|emb|CBJ34686.1| putative modulator of Rnase II stability, signal transduction protein eal-ggdef domains (gmr) [Ralstonia solanacearum PSI07] Length = 578 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 21/183 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGH 148 + RI L+ D L+GLLN SA +L N ++S++F D+D FK +ND GH Sbjct: 132 AQQRIRHLATHDTLTGLLNRSALEDRLEHALALARRNRSRVSVMFLDLDRFKNVNDTLGH 191 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-----ALGSSEQEAAILANDLRKII 203 GD+++ ++ +L V RLGG+EF ++G+ ILA I Sbjct: 192 QFGDQLLREVATRLQACAREADTVARLGGDEFVVMLESLDSMGTRRVAERILA----AIG 247 Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261 I+ G + + +S GIA H + +T++ +AD A+Y+AK+ GRN F SD+ Sbjct: 248 APFHID---GQELFLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQTFTSDL 304 Query: 262 ENN 264 ++ Sbjct: 305 DDR 307 >gi|269958888|ref|YP_003328677.1| response regulator [Anaplasma centrale str. Israel] gi|269848719|gb|ACZ49363.1| response regulator [Anaplasma centrale str. Israel] Length = 456 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 9/162 (5%) Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++S D L+G N F ++ + LS++ D+D+FK++ND FGH VGD+ Sbjct: 291 AEMSITDPLTGCYNRRYFDMHFQNIVNEARDKGKDLSVMIIDVDHFKKVNDTFGHTVGDE 350 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ L ++ + R GGEEF + +A A LR+ + N S G Sbjct: 351 LLQQLRKRIFDNIRISDLLARFGGEEFVVILPETGIDQAVTAAERLRQKVAEEPFNTSGG 410 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ T+S G+AE E + RAD+ LY AK++ RN V Sbjct: 411 -ALDKTVSIGVAEFRPSEEAKDFLNRADKCLYSAKET-RNAV 450 >gi|325981624|ref|YP_004294026.1| diguanylate cyclase [Nitrosomonas sp. AL212] gi|325531143|gb|ADZ25864.1| diguanylate cyclase [Nitrosomonas sp. AL212] Length = 637 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 8/176 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 +L +S+ + D L+G LN F I+ L L DID FKQ+ND Sbjct: 445 QLETQLQEMSEQVQEDHLTGALNRRGFDKAFEREITQLARSQGTLCFALLDIDNFKQLND 504 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH VGD + +L + + + R GGEEFA S + A +R+ + Sbjct: 505 THGHHVGDDALKYLVEAVKETVRRDDVISRYGGEEFAILLPNSGLKAAISTVARIRRYL- 563 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + + IT SAG+A+ E ++ R D+ALY AK++G+N++V + Sbjct: 564 TKKFFLHGNNRLLITFSAGVAQYQPGESQESLFKRTDEALYFAKRNGKNQIVAAEE 619 >gi|170681443|ref|YP_001743835.1| sensory box-containing diguanylate cyclase [Escherichia coli SMS-3-5] gi|331672870|ref|ZP_08373656.1| putative GGDEF domain protein [Escherichia coli TA280] gi|170519161|gb|ACB17339.1| sensory box-containing diguanylate cyclase [Escherichia coli SMS-3-5] gi|331070091|gb|EGI41460.1| putative GGDEF domain protein [Escherichia coli TA280] Length = 430 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|119470514|ref|ZP_01613217.1| response regulator/GGDEF domain protein [Alteromonadales bacterium TW-7] gi|119446215|gb|EAW27492.1| response regulator/GGDEF domain protein [Alteromonadales bacterium TW-7] Length = 411 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 81/167 (48%), Gaps = 16/167 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI-------VFFDIDYFKQINDNFGHPVGD 152 I + D L+ L N F + ++LS+ DID+FK IND +GH GD Sbjct: 250 IKHQANTDYLTDLPNRRYFFEQANNSLKELSLKKVNGALAMIDIDHFKSINDTYGHDAGD 309 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ L+ L F V RLGGEEFA + EA R +EN+ S Sbjct: 310 QVLKGLAICLKKYF-EKYLVARLGGEEFAVYFADENTPEALKRLEGFRYFVENNSQEFSK 368 Query: 213 GPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRVV 256 I +TIS G + P+ T++ +ADQ LY AK+SGRN+VV Sbjct: 369 -EKIKLTISIGFS----TGPVYQMDTLLKQADQKLYEAKESGRNKVV 410 >gi|323977026|gb|EGB72113.1| GGDEF domain-containing protein [Escherichia coli TW10509] Length = 410 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAITQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVTKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|256376388|ref|YP_003100048.1| diguanylate cyclase [Actinosynnema mirum DSM 43827] gi|255920691|gb|ACU36202.1| diguanylate cyclase [Actinosynnema mirum DSM 43827] Length = 430 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 11/160 (6%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D +GLLN A+ ++ + L ++ D+D+FK IND GH GD+V+ Sbjct: 255 ARTDAKTGLLNAEAWHLQARVELNRTRQRGDALGLLMIDVDHFKGINDTHGHQTGDEVLR 314 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++D + VGR GGEEF G+ E+ +A R + + +GP Sbjct: 315 SIADVIRESVRRGDSVGRFGGEEFVVLLPGAGRDESMAIAERARCRV--GLLGTGAGPVR 372 Query: 217 HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 +T+S G+A ++ + ++ AD ALY AK+ GR++ Sbjct: 373 GLTVSVGVAVWPDVPEDTVEGLLAAADGALYQAKRLGRDQ 412 >gi|221369368|ref|YP_002520464.1| Diguanylate cyclase precursor [Rhodobacter sphaeroides KD131] gi|221162420|gb|ACM03391.1| Diguanylate cyclase precursor [Rhodobacter sphaeroides KD131] Length = 439 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%) Query: 74 ISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 +++T+ L ++ + + + + R+ + R D L+ LLN F +L Sbjct: 241 VAVTVPPELAAVANAFNDMTRTIVEQEARLREFGRRDALTSLLNRREFDHALEQRAAPWT 300 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAA 183 E +++ DID FK+IND GH VGD V+ ++ +L G P+F R GGEEFA Sbjct: 301 GEPYALLLIDIDRFKRINDTHGHAVGDAVLRAVALRLAASARGGLPLF--RYGGEEFALL 358 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 + EA A LR+ + + + G I +TIS GIA + + + AD+A Sbjct: 359 LDRAGAAEALPEAERLRRAVAEEPVELEDGTRIAVTISVGIALGARGQAGAELFAAADRA 418 Query: 244 LYVAKKSGRN 253 LY AK +GRN Sbjct: 419 LYAAKDAGRN 428 >gi|94266350|ref|ZP_01290051.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93453064|gb|EAT03546.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] Length = 451 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 14/163 (8%) Query: 107 DCLSGLLNHSA------FISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GL NH+A +S N L + D+D+FK++ND +GH GD+V+ L+ Sbjct: 282 DAMTGLYNHTAGKEHLNLATSTAQRNGSPLCLAIIDVDWFKKVNDTYGHATGDQVLITLA 341 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK---IIENSQINISSGPSI 216 L T V R GGEEF A G A + +++R+ IE + + Sbjct: 342 RLLKQRLRTTDIVCRFGGEEFGAILPGCDLPTAQRIMDEMRQSYAAIEFRADEV----TF 397 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 H + S G+A + + AD +LY AK GRNRVV ++ Sbjct: 398 HSSFSCGVASIADCDGPVELWKAADMSLYAAKNGGRNRVVTWT 440 >gi|74312287|ref|YP_310706.1| hypothetical protein SSON_1790 [Shigella sonnei Ss046] gi|73855764|gb|AAZ88471.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|323168223|gb|EFZ53909.1| hypothetical protein SS53G_1536 [Shigella sonnei 53G] Length = 430 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|331646672|ref|ZP_08347775.1| putative GGDEF domain protein [Escherichia coli M605] gi|331045424|gb|EGI17551.1| putative GGDEF domain protein [Escherichia coli M605] Length = 430 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|332715993|ref|YP_004443459.1| diguanylate cyclase [Agrobacterium sp. H13-3] gi|325062678|gb|ADY66368.1| diguanylate cyclase [Agrobacterium sp. H13-3] Length = 664 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 12/176 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N A L E ++ D+D+FK+ ND +GH GDK Sbjct: 227 RLSNTDSLTGLQNRRAIDQHLRLLWDNWSKKGEGFAVFLIDVDFFKKYNDRYGHQEGDKC 286 Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + + + L + +GR GGEEF A S Q+ LA +R +E+ ++ Sbjct: 287 LVTVGNALQDAIIDHGASIGRYGGEEFIVLAPFKSRQQVGELAETIRHTVEDLSLSHDQR 346 Query: 214 PS----IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + ++I A + II AD+ALY+AK +GRN + F + T Sbjct: 347 RDGTFIVTVSIGASFTRPNPDGKLEKIINEADRALYIAKANGRNCMKLFDPDDPQT 402 >gi|323162446|gb|EFZ48298.1| hypothetical protein ECE128010_1347 [Escherichia coli E128010] Length = 430 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|300718335|ref|YP_003743138.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661] gi|299064171|emb|CAX61291.1| Periplasmic sensor diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661] Length = 717 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 26/234 (11%) Query: 47 NIFLFYIGLTPFY-GLEYILVENLSLVIISITISLLLGYISGSI----------LKELFI 95 NI + Y+ P G + ++V +++ + I+L+ ++ + +++L Sbjct: 229 NIPVSYVSWQPMRPGSQMLMVTGPLVLLAMLAITLMCIKMTRRLWTSSLKLSESMQKLEA 288 Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S + QL+ D L+GL N +A +S+L + E + ++ D+D FK IND +GH Sbjct: 289 SEAQAQQLALHDVLTGLPNRAAMEQQLTQRLSNLSAEGENIGLLLLDLDRFKMINDTYGH 348 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENS 206 GD +I + +L + VGRLGG+EF L Q A+ ++II Sbjct: 349 HTGDDLIVEIGQRLSALLRPEDAVGRLGGDEFVVVVNHLQDDRQITAL----CQQIIACL 404 Query: 207 QINIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I+ G + + +S GIA H ++ +AD ALY AK GR R F Sbjct: 405 TTPITLQGNRLWVGVSIGIALAPQHGTERQELMRKADIALYAAKAEGRGRYHMF 458 >gi|256372297|ref|YP_003110121.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans DSM 10331] gi|256008881|gb|ACU54448.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans DSM 10331] Length = 1167 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 104/207 (50%), Gaps = 21/207 (10%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ--LSRIDCLSGLLNHSA 117 GL + V+ L L + T + LLG + + R Q L++ D L+GL+N SA Sbjct: 621 GLAHAGVDELRLASVIGTGAQLLGLGMAEVALRDRLDRERALQQRLAQTDTLTGLMNRSA 680 Query: 118 FISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 F L + E +++ F D+D FK +ND+ GH GD+++A L L + +FV RL Sbjct: 681 FEVRLNALVAQEPVAVGFLDLDGFKDVNDSLGHTKGDELLAALGRALARLAAPDVFVARL 740 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIA-----ERCH 229 GG+EFA A +GS+ L +I E + + + G IT S G A R Sbjct: 741 GGDEFAVALVGSARHR-------LDQIAERISVMVRTIGQRWRITGSIGWALAPDDVRTT 793 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVV 256 +E ++ AD+ALY AK +G+ R V Sbjct: 794 RE----LLMAADEALYAAKAAGKARWV 816 >gi|226355662|ref|YP_002785402.1| regulator protein [Deinococcus deserti VCD115] gi|226317652|gb|ACO45648.1| putative regulator protein, GGDEF domain; putative membrane protein [Deinococcus deserti VCD115] Length = 291 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 82/165 (49%), Gaps = 18/165 (10%) Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 + +R+D L+G+ A L N +SIV DID+FK +ND GH GD V Sbjct: 133 RAARLDALTGVYGRGAIEEELKRSMHTAREANTAVSIVVTDIDHFKSVNDLHGHMAGDDV 192 Query: 155 IAFLSDQL---VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + ++ L V G VGR GGEEF G S +A ++A LR+ E S + + Sbjct: 193 LRAVAKCLRRNVRRIGG--VVGRWGGEEFVVLLPGISRTDALVVAEQLRR--ELSAVPLG 248 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 P IT S G+A R + + RAD A+Y AK++GRN V Sbjct: 249 GLP---ITASFGVAAYRGTGDSPEKMFSRADLAMYEAKRAGRNAV 290 >gi|224369891|ref|YP_002604055.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223692608|gb|ACN15891.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 470 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N A+ + Y S++F D D+FK IND +GH +GDK + + Sbjct: 312 DPLTGAYNRRAYNQRIEDEMDRFLRYGTLFSLLFIDADHFKNINDTYGHAIGDKCLQEII 371 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + + R GGEEF + A +A +RK IE + ++ +T Sbjct: 372 KRASKLIRKSDMLARYGGEEFVLVMPETDAANAKNVAEKIRKTIERIAF-LYKKDAVKVT 430 Query: 220 ISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256 +S G+ + + + ++ RAD A+Y AK+ GRNRVV Sbjct: 431 VSIGVTQVRENDAVPQDVLGRADAAVYQAKQDGRNRVV 468 >gi|222053163|ref|YP_002535525.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Geobacter sp. FRC-32] gi|221562452|gb|ACM18424.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Geobacter sp. FRC-32] Length = 439 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 21/179 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148 +Y+R+ ++ D L+ L N F LG YN+ ++++ D+D FK +NDN GH Sbjct: 261 AYDRLQYMANFDPLTSLPNRILFFDRLGQTVSHARRYNQMFALLYVDLDRFKPVNDNLGH 320 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAA--ILANDLRK 201 VGD ++ ++ ++ V R+GG+EF A G +E A I A D+ Sbjct: 321 DVGDMLLREVAGRMTGCIRDADTVARMGGDEFCIILSKIAGKGDAETVAGKIIAALDVDF 380 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + Q +I G SI I+I ++ +P ++ AD A+Y AK++GRNR F+D Sbjct: 381 CLRGHQCSI--GASIGISIFPADSD----DP-QLLLKMADMAMYNAKENGRNRFCLFAD 432 >gi|168754353|ref|ZP_02779360.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4401] gi|168799156|ref|ZP_02824163.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC508] gi|187775846|ref|ZP_02798727.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4196] gi|188024578|ref|ZP_02772373.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4113] gi|189010289|ref|ZP_02806055.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4076] gi|189402984|ref|ZP_02792537.2| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4486] gi|208808066|ref|ZP_03250403.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4206] gi|208816404|ref|ZP_03257583.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4045] gi|208822596|ref|ZP_03262915.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4042] gi|209400191|ref|YP_002269752.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4115] gi|187770376|gb|EDU34220.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4196] gi|188018208|gb|EDU56330.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4113] gi|189001295|gb|EDU70281.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4076] gi|189358305|gb|EDU76724.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4401] gi|189363103|gb|EDU81522.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4486] gi|189378245|gb|EDU96661.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC508] gi|208727867|gb|EDZ77468.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4206] gi|208733052|gb|EDZ81740.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4045] gi|208738081|gb|EDZ85764.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4042] gi|209161591|gb|ACI39024.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. EC4115] gi|320192470|gb|EFW67112.1| Sensory box/GGDEF domain protein [Escherichia coli O157:H7 str. EC1212] gi|320637456|gb|EFX07256.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. G5101] gi|320648475|gb|EFX17130.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H- str. H 2687] gi|320664405|gb|EFX31556.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. LSU-61] gi|326338525|gb|EGD62352.1| Sensory box/GGDEF domain protein [Escherichia coli O157:H7 str. 1125] gi|326345575|gb|EGD69315.1| Sensory box/GGDEF domain protein [Escherichia coli O157:H7 str. 1044] Length = 476 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 368 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 429 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 465 >gi|217973467|ref|YP_002358218.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223] gi|217498602|gb|ACK46795.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS223] Length = 749 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 11/163 (6%) Query: 107 DCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +A FI+S S S + D+D FKQ+ND GH GD ++ + Sbjct: 318 DSLTGLANRNALFKLIQSFITS-DSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVV 376 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHI 218 Q+ M RLGG+EFA G +++E A LA + K + + ++ G ++ Sbjct: 377 RQICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETINKHVAKRYV-LADGKGVYS 435 Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++S GIA + ++ ADQA+Y++K +GRNR F++ Sbjct: 436 SVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478 >gi|147673258|ref|YP_001218185.1| GGDEF family protein [Vibrio cholerae O395] gi|262170059|ref|ZP_06037748.1| GGDEF family protein [Vibrio cholerae RC27] gi|146315141|gb|ABQ19680.1| GGDEF family protein [Vibrio cholerae O395] gi|227014585|gb|ACP10795.1| GGDEF family protein [Vibrio cholerae O395] gi|262021467|gb|EEY40179.1| GGDEF family protein [Vibrio cholerae RC27] Length = 312 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS + S+ID L+ L N F S + L ++ FDID+FKQIND +GHP GD Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L R GGEEF LA ++R +E+ + + Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRDYVESHTL-MWQ 264 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+SAG A H +++ ADQAL AK+ GRNRV+ Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309 >gi|330890882|gb|EGH23543.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 527 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 15/172 (8%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E +A ++ + I + QI + P + Sbjct: 396 RVVEQCIRHPGDVAARYGGEEIAVVLPGTDESSTRQVAENILQAIRDEQIEHPASPFGIV 455 Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A +R + ++I AD+ALY AK GRNRV S+I +T Sbjct: 456 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 505 >gi|325845271|ref|ZP_08168575.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1] gi|325488712|gb|EGC91117.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1] Length = 785 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 92/166 (55%), Gaps = 9/166 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAF 157 I +L+ D L+GL N + + S +L +++F D+D FK++ND+FGH GD+ + Sbjct: 366 IKRLAYTDFLTGLHNRRSLYKYIESEKAQLNLTVMFMDLDNFKKLNDSFGHHYGDEALLL 425 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSI 216 +S +L+ + FV R+GG+EF +SE + L N + +I+ + S G Sbjct: 426 ISKKLISL-CEDAFVARIGGDEFVVVWKNLNSETD---LMNKINEILLEMKTEFSKGDKT 481 Query: 217 H-ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I++S GI ++ + ++ + D ALY AK+ G+N+ V ++D Sbjct: 482 NIISVSMGIVNSKGRDIDVDHLLLQGDLALYRAKEKGKNQFVIYTD 527 >gi|312971539|ref|ZP_07785714.1| uncharacterized protein ydaM [Escherichia coli 1827-70] gi|310336136|gb|EFQ01336.1| uncharacterized protein ydaM [Escherichia coli 1827-70] Length = 430 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|220933432|ref|YP_002512331.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7] gi|219994742|gb|ACL71344.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7] Length = 1076 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +++ D L+GL N F ISS + + ++++FD+D FK IND FGH GD V+ Sbjct: 654 MAQHDALTGLYNRHRFQEHLDRMISSAQRNDSRFALLYFDLDEFKYINDTFGHRAGDTVL 713 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + ++ + + RLGG+EFA A + E + LA + + I G + Sbjct: 714 VRAAGEVSSLVRSGEVFARLGGDEFAVLAEIRHDDEPSQLAERIARAISAIPFRF-RGSN 772 Query: 216 IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253 + +T S GIA H + + ++ AD A+Y AK +G+N Sbjct: 773 LRLTASIGIAFFPEHGDNVEDLVAHADTAMYQAKSNGKN 811 >gi|167913383|ref|ZP_02500474.1| hypothetical protein Bpse112_23045 [Burkholderia pseudomallei 112] Length = 441 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N S F +N L++V D+D+FKQ N Sbjct: 254 RRLFDAHASLMRTASHDALTMVYNRSYFNEQFERAFHYARRHNTPLALVMVDVDHFKQYN 313 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V G FV R GGEEFA + E+ AA +A R+ Sbjct: 314 DTFGHLQGDTCLAAVAAALSGVAGRANDFVARYGGEEFAVVLPRADERGAATIAERARQA 373 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E +I AD ALY AK GRN Sbjct: 374 VERLRIAADTAPG-YVTVSAGYAASSGNPFETPGALIAAADAALYRAKMLGRN 425 >gi|126664503|ref|ZP_01735487.1| putative diguanylate cyclase (GGDEF) with HAMP domain [Marinobacter sp. ELB17] gi|126630829|gb|EBA01443.1| putative diguanylate cyclase (GGDEF) with HAMP domain [Marinobacter sp. ELB17] Length = 445 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 85/186 (45%), Gaps = 13/186 (6%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130 ++ L Y + +++ + L+R+D L+GL N + I N Sbjct: 254 MTRTLKYSRDELEQKIAERTTDLHSLARVDSLTGLCNRRSLDEILEVEIQRASRRNAGFG 313 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 +++ DID+FK IND+ GH GD+V+ + L GR GG+EF Sbjct: 314 VMWLDIDHFKAINDSLGHQTGDEVLCQAALWLQYSLRPYDQPGRWGGDEFMVVLSPCDHN 373 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249 L+ LR+ E S+ +I IT+S G A C + TI++ ADQALY AK Sbjct: 374 ILRFLSERLRQTFERE----SANGNIPITVSVG-AYLCQPGDSAKTILHEADQALYQAKA 428 Query: 250 SGRNRV 255 GRN V Sbjct: 429 RGRNTV 434 >gi|119774648|ref|YP_927388.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119767148|gb|ABL99718.1| response regulator receiver modulated diguanylate cyclase [Shewanella amazonensis SB2B] Length = 416 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 S + LG S+ DID+FK +ND GH VGD V+ + +L G V R Sbjct: 272 SQQVPVLGQQGASFSLAVLDIDFFKDVNDKHGHDVGDFVLTEFASRLKQSLGQHFTVARF 331 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH--KEPI 233 GGEEF A G + A L R+ + + + +T S GI H +E + Sbjct: 332 GGEEFVVALKGLDGKRALALMEGFRERLAMEPF-VFGELELRLTASIGIVALGHDSEETL 390 Query: 234 STIIYRADQALYVAKKSGRNRVV 256 ++I +AD ALY AK +GRNR V Sbjct: 391 DSLIKQADVALYQAKTNGRNRCV 413 >gi|304408638|ref|ZP_07390259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS183] gi|307305467|ref|ZP_07585215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica BA175] gi|304352459|gb|EFM16856.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS183] gi|306911770|gb|EFN42195.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica BA175] Length = 749 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 11/163 (6%) Query: 107 DCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +A FI+S S S + D+D FKQ+ND GH GD ++ + Sbjct: 318 DSLTGLANRNALFKLIQSFITS-DSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVV 376 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHI 218 Q+ M RLGG+EFA G +++E A LA + K + + ++ G ++ Sbjct: 377 RQICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETINKHVAKRYV-LADGKGVYS 435 Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++S GIA + ++ ADQA+Y++K +GRNR F++ Sbjct: 436 SVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478 >gi|209548193|ref|YP_002280110.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533949|gb|ACI53884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1062 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 16/179 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144 EL ++ NRI S D L+ L N +L +K SI+ D+D FK+IND Sbjct: 623 ELELAKNRIEHNSLHDPLTALANRRKLDIALEELTNDGRRQRQKFSILHIDLDRFKEIND 682 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA----NDLR 200 GH GD ++ S L V R+GG+EF AL + E A L+ ++R Sbjct: 683 TLGHAAGDAMLVHASKVLAKNVRGSDIVARIGGDEFVILALDVGDTEMAQLSARIIEEMR 742 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + I+ + G SI + ++ GI K ++ AD ALY AK +GRNR F+ Sbjct: 743 QPIDFQGFSCRCGVSIGVALANGIHVDARK-----VLINADIALYRAKSTGRNRFEFFN 796 >gi|90578694|ref|ZP_01234504.1| sensory box/GGDEF family protein [Vibrio angustum S14] gi|90439527|gb|EAS64708.1| sensory box/GGDEF family protein [Vibrio angustum S14] Length = 438 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 13/130 (10%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAAL 185 S++F DID+FKQ+ND +GH +GD+V+ + + R GGEEF A L Sbjct: 309 SMIFIDIDHFKQVNDKYGHRLGDEVLRRFASLINKRVRKSDVFARWGGEEFVIFCPATPL 368 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 G++ A LA +R+ IE++ + + +T S G+AE E S I RAD+AL Sbjct: 369 GAT----AELAESIRECIESAVWD----NGMKVTCSLGVAE-LENEGYSHFIERADEALM 419 Query: 246 VAKKSGRNRV 255 AK+ GRNRV Sbjct: 420 KAKERGRNRV 429 >gi|157160853|ref|YP_001458171.1| sensory box-containing diguanylate cyclase [Escherichia coli HS] gi|188493845|ref|ZP_03001115.1| sensory box-containing diguanylate cyclase [Escherichia coli 53638] gi|256022945|ref|ZP_05436810.1| hypothetical protein E4_06209 [Escherichia sp. 4_1_40B] gi|300948426|ref|ZP_07162529.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1] gi|300954594|ref|ZP_07167039.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1] gi|301022691|ref|ZP_07186541.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1] gi|157066533|gb|ABV05788.1| sensory box-containing diguanylate cyclase [Escherichia coli HS] gi|188489044|gb|EDU64147.1| sensory box-containing diguanylate cyclase [Escherichia coli 53638] gi|299881136|gb|EFI89347.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1] gi|300318428|gb|EFJ68212.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1] gi|300452101|gb|EFK15721.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1] gi|332343040|gb|AEE56374.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 430 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|147673926|ref|YP_001217148.1| GGDEF family protein [Vibrio cholerae O395] gi|262169618|ref|ZP_06037309.1| GGDEF family protein [Vibrio cholerae RC27] gi|146315809|gb|ABQ20348.1| GGDEF family protein [Vibrio cholerae O395] gi|262021852|gb|EEY40562.1| GGDEF family protein [Vibrio cholerae RC27] Length = 195 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 7/161 (4%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 L+ D L+G N + +S + L ++ D+D+FK IND FGH GDKV+ Sbjct: 20 LASRDPLTGAHNRLSLTTSFQHFERFSDQTSLCLLVIDLDFFKSINDQFGHDTGDKVLIE 79 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + V G R+GGEEF S ++A + LR I+ + Sbjct: 80 TTRLFTQVVGDNNLY-RIGGEEFCVTLFDQSLEQAGRVCEHLRAIVSQHLFAFRE-KRVQ 137 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +TIS G+ E + ++ ++ AD LY AKK+GRN+V F Sbjct: 138 VTISIGVCEYQAGDQLNDLLKFADMELYRAKKAGRNQVRLF 178 >gi|238794768|ref|ZP_04638371.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Yersinia intermedia ATCC 29909] gi|238725922|gb|EEQ17473.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Yersinia intermedia ATCC 29909] Length = 350 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 106/230 (46%), Gaps = 11/230 (4%) Query: 30 YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89 Y++ F S+FI I IA F + L Y I +S++++SI Y S Sbjct: 127 YYTFFLSVFIPQCINIALNFDRLVSLGYLY--RSIFKSLMSIILLSIL------YFIFSR 178 Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNF 146 ++ F ++ + S D L+ L N + L ++ + I DID+FK++ND+ Sbjct: 179 FQKTFSKFSMLQFQSSTDQLTKLPNRFSINRHLDNFKQTRKDRFIALIDIDFFKKVNDSH 238 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GDK++ ++ +L V F+ R GGEEF + + A + + I ++ Sbjct: 239 GHSAGDKILYDIAQELKSVIRGNDFLARYGGEEFLLLIHTADNRIAREILARIITHIRDT 298 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S++ITIS G A I AD+ALY AK GR+ VV Sbjct: 299 LFITPDNHSLNITISIGAALYVKDTSFDDAIKSADKALYQAKNGGRDEVV 348 >gi|218246546|ref|YP_002371917.1| diguanylate cyclase [Cyanothece sp. PCC 8801] gi|218167024|gb|ACK65761.1| diguanylate cyclase [Cyanothece sp. PCC 8801] Length = 462 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 11/180 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + +++ L+ ID L+ + N F L + LS++ D+DYFK N Sbjct: 277 QELQKANDKLEYLAIIDGLTQVHNRRYFNQYLVQEWRRLMRERQSLSLILCDVDYFKLFN 336 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D++ H GD + ++ + V P V R GGEEFA ++E AA +A +R Sbjct: 337 DHYLHQAGDDCLQKIAQVMQDVVKRPADLVARFGGEEFAIILSNTNELGAARVAQKIRLE 396 Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259 +E +I + S S ++T+S GIA IS+ +I AD+ALY AK GRNR ++ Sbjct: 397 VEKLKIPHALSQCSEYVTLSLGIATTIPTPDISSERLILAADKALYQAKNMGRNRYCLYA 456 >gi|188592140|ref|YP_001796738.1| diguanylate cyclase (ggdef) domain [Cupriavidus taiwanensis LMG 19424] gi|170938514|emb|CAP63501.1| putative diguanylate cyclase (GGDEF) domain [Cupriavidus taiwanensis LMG 19424] Length = 583 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 13/183 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFK 140 S+ + + L+ D L+GL N A + + +++V DID+FK Sbjct: 385 SLFRHYLARGEALRTLAETDALTGLANRRVFAARFAAEAARCAAEQRPIAVVMLDIDHFK 444 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH GD V+ ++ L RLGGEEFA G+ +AA +A +LR Sbjct: 445 AINDRWGHASGDVVLRAVAAALRSGVRKDDLPARLGGEEFAVLLPGTGVDDAAAVAGNLR 504 Query: 201 KIIENSQINISS----GPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNR 254 + +E + + ++ + T S G+A P + ++ AD+ LY AK +GRN+ Sbjct: 505 QRLERLRCDPAADALCNEPMRFTASFGVAGSAPGVPGSLDALLMAADRRLYAAKANGRNQ 564 Query: 255 VVC 257 VV Sbjct: 565 VVA 567 >gi|114777426|ref|ZP_01452423.1| GGDEF/response regulator receiver domain protein [Mariprofundus ferrooxydans PV-1] gi|114552208|gb|EAU54710.1| GGDEF/response regulator receiver domain protein [Mariprofundus ferrooxydans PV-1] Length = 277 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 20/174 (11%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L Y +IV D+D FKQ+ND +GH GDKV++ ++ Sbjct: 104 DVLTGLYNRRYMMEQLYQGVSQATRYRHPYAIVVMDLDRFKQVNDIYGHAAGDKVLSTMA 163 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L GR GGEEF + A A K + + + + G SI ++ Sbjct: 164 GILRESVRDADIAGRWGGEEFLVLLPHTDLDGARQAAEQWLKRVLATPLGVGGGKSIQVS 223 Query: 220 ISAGIA--ERCHKEP-----------ISTIIYRADQALYVAKKSGRNRVVCFSD 260 SAG+A + + P + T+++ AD+ +Y+AK SGR+ VV D Sbjct: 224 FSAGVAMFDPVNGRPAVKQALNIDQQVETLLHLADKRMYLAKDSGRSCVVVSGD 277 >gi|332091751|gb|EGI96831.1| hypothetical protein SB521682_1541 [Shigella boydii 5216-82] Length = 410 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|330684523|gb|EGG96236.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus epidermidis VCU121] Length = 356 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 9/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 NR + D L+GL N F L ++NE L ++ DID FK +ND + H Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNQLSKYTETHNESLGLLLIDIDGFKDVNDTYTHQA 241 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + R GGEEF+ + ++ LA ++R+ +E S ++ Sbjct: 242 GDAVLKQMSQLLKNYVPKQFLIFRNGGEEFSVVINDYTLDQSVKLAENIRQGVEKSSFHL 301 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 + I +++S G+ + S + AD ++VAK GRN+V+ Sbjct: 302 PNKEVIKLSVSIGVGYLTQDDRKSQRRVFKDADDMVHVAKSEGRNKVM 349 >gi|299530088|ref|ZP_07043514.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298721745|gb|EFI62676.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 609 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 7/170 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 + L+ D L+GL N A +L + L++ F D+D FKQ+ND GH GD+V+ Sbjct: 440 NHLANHDALTGLANRRALEETLNQELADGQMLAVCFMDLDGFKQVNDTQGHDAGDEVLRV 499 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ +L V RLGG+EF + L + + +++ + + I ++ G Sbjct: 500 VAARLTAQARAGDCVARLGGDEFVVLLSGLHTPGEAMSVMKRCMEAV--RQPIALNGGVM 557 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + + S GI+ + ++ AD+A+Y AK +G+ R+V SD+ ++ Sbjct: 558 VQVGSSIGISISTADSSSANLMQSADEAMYSAKHAGKGRIVQHSDLSQDS 607 >gi|264677578|ref|YP_003277484.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262208090|gb|ACY32188.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 406 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 115/230 (50%), Gaps = 14/230 (6%) Query: 33 IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92 ++ SI T F ++ +G + L L+LV I + +LL ++ +I + Sbjct: 154 LWLSIAFTTYTFTRPGLIWLLGYSDLRSLPKSPYWLLTLVSI-LNFALLFSFVMTAIAAK 212 Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 + +++ + +D L+ LLN +F ++ + Y ++++ DID+FK+IND+ Sbjct: 213 ETV--DKLRRERDLDALTQLLNRRSFQEYAQQRLADIRLY--PMAVLACDIDHFKRINDS 268 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD+V+ +S L V R GGEEF S ++A +A +++ + Sbjct: 269 WGHKRGDEVLQLVSTTLKDSVRENDLVARFGGEEFVLLLTEISLKDAEAIALRIQRDLRL 328 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + SG + +T+S GI+ P+ + AD+ LY AK +GR+RV Sbjct: 329 NNEVLPSGYT--LTLSFGISALDSTTPLDQALREADRLLYEAKNAGRDRV 376 >gi|258405957|ref|YP_003198699.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692] gi|257798184|gb|ACV69121.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692] Length = 544 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 73/157 (46%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N +G E + + DIDYFK IND GH VGD+V+ + Sbjct: 385 DSLTGIFNRERLDEDMGLLIHRCHERGEGFACILVDIDYFKTINDTKGHTVGDQVLVEFA 444 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF G+ + A+ LA +R I ++ ++ Sbjct: 445 RLLAQQSRGTDSVFRYGGEEFLMVLPGADLRGASQLAERVRAAIGGTRF----AGETRLS 500 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+AE + ++ RAD ALY AK GRNRVV Sbjct: 501 ASFGVAEYQLSDNWEGLLSRADTALYAAKAQGRNRVV 537 >gi|237749424|ref|ZP_04579904.1| predicted protein [Oxalobacter formigenes OXCC13] gi|229380786|gb|EEO30877.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 806 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 13/183 (7%) Query: 88 SILKELFISYNRI---SQLSRIDCLSGLLNHSAF-ISSLGSYNEKLS------IVFFDID 137 S+L +++ Y R+ ++ ++ D L+GLLN AF + ++ + L+ + D D Sbjct: 613 SLLATVWV-YRRLGDATKQAQSDGLTGLLNRGAFEMRAMETLQRSLTDGHGVMLAIIDCD 671 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LA 196 +FK +ND +GH GDKV++ L+D L F V R+GG+EFA SS + I Sbjct: 672 HFKLVNDTYGHLTGDKVLSALADCLRENFRQDDLVSRIGGDEFAICCKISSGETGVINKI 731 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 L +I + G +I+ T+S GIA + + AD ALY AK+ GRN+ Sbjct: 732 ARLSEIWSKTPFETGEGKTIYSTLSIGIAISPADGTAYDKLFHHADIALYKAKQQGRNQY 791 Query: 256 VCF 258 + Sbjct: 792 AIY 794 >gi|117925193|ref|YP_865810.1| diguanylate cyclase with PAS/PAC sensor [Magnetococcus sp. MC-1] gi|117608949|gb|ABK44404.1| diguanylate cyclase with PAS/PAC sensor [Magnetococcus sp. MC-1] Length = 564 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 16/173 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ +LS D L+ L+N L Y LSI+ D+D+FK+ ND +GH Sbjct: 392 QQLRELSTTDGLTKLINRRRMDELLDEELKRAVRYGLNLSILLLDVDHFKKFNDTYGHEQ 451 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ L+ ++ F + R GGEEF + A +A+ LR+ + +++ Sbjct: 452 GDHVLIALAAEMKSYFRNIDYPCRYGGEEFFVILPNTDADGAIKVADRLRERVAEKEVD- 510 Query: 211 SSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +TIS G+A P ++ AD ALYVAK+ GRN+VV S+ Sbjct: 511 ----GLRVTISIGVASYPDLSITRP-DAMVRAADSALYVAKEQGRNKVVYASE 558 >gi|315127139|ref|YP_004069142.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913] gi|315015653|gb|ADT68991.1| GGDEF domain-containing protein [Pseudoalteromonas sp. SM9913] Length = 298 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHP 149 YNR+ +L+ D L+GL N S F + L ++ S++ D+D FKQ+NDN+GH Sbjct: 134 YNRVLRLATKDSLTGLNNRSQFNDMLLQKLENHRRNGHSFSLMLLDLDNFKQVNDNYGHK 193 Query: 150 VGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD V I F + + GT V R GG+EF+ + ++A + +++ NS I Sbjct: 194 IGDDVLIEFAAVLSSSIRGTDS-VFRFGGDEFSILIEDPAFTTNKVVAERIMRLVRNSPI 252 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + I + ++ C E I RAD+ LY AK SGRN Sbjct: 253 MSKYNVTASIGFTLTNSDDCQNE----IFSRADKGLYKAKASGRN 293 >gi|311696440|gb|ADP99313.1| diguanylate cyclase [marine bacterium HP15] Length = 573 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 12/192 (6%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134 LG + + ++ + +++L+RID L+GL N I + +++ Sbjct: 383 LGQSTRELETKVAQRTDELNRLARIDPLTGLKNRRGLDEILEEEIQRARRQDSGFGVIWL 442 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK INDN GH GD+++ ++ L GR GG+EF Sbjct: 443 DIDHFKTINDNLGHQAGDQILCRVALWLKAGVRPYDHPGRWGGDEFVVLLSPCDPDTLEQ 502 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +A +R+++E Q + +G ++ +++ A + TI+ AD+ALY AK GRN+ Sbjct: 503 IARRIRELVE--QESRKTGAAVTVSVGGFFAR--PGDTSDTILRHADRALYRAKAGGRNQ 558 Query: 255 VVCFSDIENNTC 266 VC ++ T Sbjct: 559 -VCIDTRDDETA 569 >gi|284921215|emb|CBG34281.1| putative signaling protein [Escherichia coli 042] Length = 430 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|220936199|ref|YP_002515098.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] gi|219997509|gb|ACL74111.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] Length = 388 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 25/225 (11%) Query: 47 NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106 +F Y+G + Y + + VI T L L+E R L+ + Sbjct: 170 RLFSVYLGQSVTY---WRHTHQMEAVIRERTAELRQALDQAQELRE------RYEALAVV 220 Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N A +S + + +++ D+D+FK++ND+ GH GD+V+ + Sbjct: 221 DDLTGLNNRRFFFPEAQAALSRTRRHGQPFAVLALDLDHFKRVNDDHGHAWGDRVLQDVG 280 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + + R GGEEF A G+ + A LA +R + N+ + +T Sbjct: 281 AALKSMLREGDILARFGGEEFMFALPGTDLEGAMSLAQRIRARLAKLSWNVGD-RCLLVT 339 Query: 220 ISAGI--------AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+ AE E + ++ +AD+ALY +K +GR+RV Sbjct: 340 ASMGVSGLGEDEAAEGSSHEILDRLVAQADEALYGSKHAGRDRVT 384 >gi|157145625|ref|YP_001452944.1| RNase II stability modulator [Citrobacter koseri ATCC BAA-895] gi|157082830|gb|ABV12508.1| hypothetical protein CKO_01371 [Citrobacter koseri ATCC BAA-895] Length = 691 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 18/185 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 SG+ + E + R+ L+ D ++GL N +A I + G + ++ IV+ D+D Sbjct: 247 SGTDITEERRTQERLRVLANTDTITGLPNRNAIHELINDAIENAG--DNQVGIVYLDLDN 304 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAI 194 FK++ND +GH GD+++ +S ++ + RLGG+EF + GS E A+ Sbjct: 305 FKRVNDAYGHMFGDQLLQAVSLAILSCLEENQLLARLGGDEFIVLATQTSQGSLEAMASR 364 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + LR+ I + +G SI I ++ H ++I AD A+Y AK+ GR + Sbjct: 365 ILTRLRQPFRIGLIEVYTGCSIGIALAPQ-----HGHDSESVIRNADTAMYTAKEGGRGQ 419 Query: 255 VVCFS 259 FS Sbjct: 420 FCVFS 424 >gi|331662751|ref|ZP_08363674.1| putative GGDEF domain protein [Escherichia coli TA143] gi|331061173|gb|EGI33137.1| putative GGDEF domain protein [Escherichia coli TA143] Length = 410 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCTLA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|325261317|ref|ZP_08128055.1| GGDEF/response regulator receiver domain protein [Clostridium sp. D5] gi|324032771|gb|EGB94048.1| GGDEF/response regulator receiver domain protein [Clostridium sp. D5] Length = 317 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 11/181 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLS---IVFFDIDYFKQIN 143 KEL S +++ ++ D L+GL N I L Y K ++ DID FK +N Sbjct: 138 KELLTSMEKLNYMAFRDGLTGLYNRRYVIGDLVEDITKYTGKARKNVLILADIDDFKMVN 197 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD + +++ + + V R GGEEF A +E EA ++ +R+ + Sbjct: 198 DTYGHEAGDMALICIANIMEGICRDYKVV-RWGGEEFLVALFNVTESEAFEVSETIRREV 256 Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 E+ +I S IT+ + ER E I + +ADQALY K++G+N V + +IE Sbjct: 257 EDFEIAYGEDTFSCTITLGMHVYER--HEGIEECVEKADQALYYGKRNGKNCSVWYENIE 314 Query: 263 N 263 Sbjct: 315 Q 315 >gi|293409736|ref|ZP_06653312.1| conserved hypothetical protein [Escherichia coli B354] gi|291470204|gb|EFF12688.1| conserved hypothetical protein [Escherichia coli B354] Length = 410 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCTLA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|149909418|ref|ZP_01898073.1| sensory transduction protein kinase [Moritella sp. PE36] gi|149807528|gb|EDM67477.1| sensory transduction protein kinase [Moritella sp. PE36] Length = 409 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 ID L+ + A L + K SI DID FK+ ND +GH +GD V+ ++ QL V Sbjct: 235 IDDLTRIPGRRALNIELAQLSGKYSIAMLDIDRFKKFNDAYGHDIGDSVLKMVASQLATV 294 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS------------- 212 G V R GGEEF G S + N++R +I + I Sbjct: 295 KGRGR-VFRYGGEEFTILFKGKSALDCVGYLNEIRVLIADYPFQIRQPVERREPQEEGAN 353 Query: 213 ----------GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ +TIS G+A ER +I AD+ LY AK+SGRN+V Sbjct: 354 NTDSCREEFIDKTVKVTISIGVAQERSSTTSPDEVIIAADKLLYKAKESGRNQV 407 >gi|90426221|ref|YP_534591.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] gi|90108235|gb|ABD90272.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] Length = 778 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 15/171 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLS-IVFFDIDYFKQINDNFGHP 149 RI L+R D L+GL N F + G + S ++F D+D FKQ+ND GHP Sbjct: 333 RIIHLARYDELTGLPNRVNFRDEIERLLMAVHGHAETRPSALLFIDLDQFKQVNDTLGHP 392 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQ 207 GD+++ ++D+L + FV R GG+EF +S++++A+LA R+I++ S+ Sbjct: 393 CGDQLLCDVADRLREMLRPEDFVARFGGDEFVVFQQHIASKEDSALLA---RRIVDRLSE 449 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + I S GIA ++ AD ALY AK GR CF Sbjct: 450 RYLIDHHVVEIGASIGIAVTAPGVKADVLLKNADMALYRAKADGRG-TFCF 499 >gi|307293251|ref|ZP_07573097.1| diguanylate cyclase/phosphodiesterase [Sphingobium chlorophenolicum L-1] gi|306881317|gb|EFN12533.1| diguanylate cyclase/phosphodiesterase [Sphingobium chlorophenolicum L-1] Length = 647 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 16/197 (8%) Query: 73 IISITISLLLGYISGSILK-ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------S 124 I T ++L + G K +L I + R L+R D L+G+ N A L S Sbjct: 182 ITKTTHRIVLEALQGKYEKSQLAIKFER---LARFDSLTGVENRMAMQMRLRELFDGRRS 238 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + +++ + D+D FK+IND+ GH +GD+++ ++++L V R GG+EF Sbjct: 239 DRDAMAVFWMDLDRFKEINDSLGHMIGDQLLCRVAERLSHALDGRGHVARFGGDEFVLIC 298 Query: 185 LGSSEQEAAILAND-LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQ 242 G+ A +A+D + + + Q+ G + +T S GIA + ++ AD Sbjct: 299 PGADRPAAEQIADDVMAEFAHDFQVG---GYQLGVTASMGIAVAPEDGQDSDELLQHADM 355 Query: 243 ALYVAKKSGRNRVVCFS 259 ALY AK +GRNR F+ Sbjct: 356 ALYQAKHAGRNRHAQFA 372 >gi|299530043|ref|ZP_07043470.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni S44] gi|298722023|gb|EFI62953.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni S44] Length = 435 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 78/161 (48%), Gaps = 21/161 (13%) Query: 107 DCLSGLLNHSAFISSLGSYN--------EKLSI----VFFDIDYFKQINDNFGHPVGDKV 154 D L+GL N SA GSY E+ + + D+D FKQ+ND FGH GD+V Sbjct: 252 DDLTGLPNRSA-----GSYELENCQRIAERQGVPYALIMCDVDLFKQVNDQFGHEAGDQV 306 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L + V R GGEEF G Q A LA LR+ I + S Sbjct: 307 LQQIAKVLRSTVRSSEHVARWGGEEFLIIVPGVGLQAALELAERLRRSIASH----SYAA 362 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E + ++ R D ALY AK SGRN+V Sbjct: 363 AGTITMSFGVGSWQAGEASAQLLRRTDMALYRAKSSGRNQV 403 >gi|227112657|ref|ZP_03826313.1| hypothetical protein PcarbP_06834 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 307 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 7/158 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAF 157 RI S D L+ L N FI+ L K +F DID FK IND +GH GD+V++ Sbjct: 145 RIQSFS--DELTQLPNRRFFINELKKLEAKTPYLFIIDIDNFKVINDKYGHTKGDEVLSK 202 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L + + R+GGEEFA ++ A LA R++++N+ I H Sbjct: 203 FGHILSRFDNSEVVATRIGGEEFAIILYAGTQDRAEKLA---REVLKNANKIIIKNMH-H 258 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++S G ++ +EP + R D ALY AK +G+ +V Sbjct: 259 LSVSIGAGKKQPQEPTEHFMKRVDIALYQAKNTGKGKV 296 >gi|34495842|ref|NP_900057.1| hypothetical protein CV_0387 [Chromobacterium violaceum ATCC 12472] gi|34330267|gb|AAQ58065.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 334 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 11/185 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 S L+E+ + + + + D L+GL N ++ + + + +++++ D D+FK Sbjct: 149 SHLREIELLQQGLREQALRDPLTGLFNRRHLDDILPRVLAHMLALHREVAVLMVDADHFK 208 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND +GH GD V+ L L F + V R GGEEF G++ + A A LR Sbjct: 209 RINDTYGHRCGDAVLTALGACLSDHFRSGDIVCRYGGEEFFVLLPGATLEAAYAKAEGLR 268 Query: 201 KIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + + + G S+ +T+S G+A C H +++ AD+ALY AK+ GR+RV Sbjct: 269 RAVGERPME-ALGHSLAVTLSIGLAL-CPLHGSDAESVVRAADEALYQAKRQGRDRVCVA 326 Query: 259 SDIEN 263 + +++ Sbjct: 327 ARLQS 331 >gi|50122121|ref|YP_051288.1| hypothetical protein ECA3199 [Pectobacterium atrosepticum SCRI1043] gi|49612647|emb|CAG76097.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043] Length = 307 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 7/158 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAF 157 RI S D L+ L N FI+ L K +F DID FK IND +GH GD++++ Sbjct: 145 RIQSFS--DELTQLPNRRFFINELKKLEAKTPYLFIIDIDNFKVINDKYGHTKGDEILSK 202 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L + + R+GGEEFA ++ A LA R++++N+ I H Sbjct: 203 FGHILSRFDNSEVVATRIGGEEFAIILYAGTQDRAEKLA---REVLKNANKIIIKNMH-H 258 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++S G ++ +EP + R D ALY AK +G+ +V Sbjct: 259 LSVSIGAGKKQPQEPTEHFMKRVDVALYQAKNTGKGKV 296 >gi|154248589|ref|YP_001419547.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Xanthobacter autotrophicus Py2] gi|154162674|gb|ABS69890.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Xanthobacter autotrophicus Py2] Length = 864 Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 22/177 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 +RI+ L+ ID L+GL N I SLG +E L+++ D+D+FK +N+ GH Sbjct: 408 DRIATLASIDALTGLPNRRRLIESLGDLIAEAAERDEPLAVMMLDVDHFKDVNETLGHST 467 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ ++ +L T VGR GG+EF + +EAA +A L I+ Sbjct: 468 GDELLVEMARRLQAQLRTGDTVGRTGGDEFVVVVHDCAAEEAARIARRL--------IDY 519 Query: 211 SSGP----SIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S P +H+T+SA + H T++ AD A+Y AK R R F++ Sbjct: 520 LSAPIPAQKLHLTMSASVGIALYPQHGTSAETLLRHADTAMYEAKSKARGRFQFFTE 576 >gi|87122329|ref|ZP_01078210.1| sensory box protein [Marinomonas sp. MED121] gi|86162304|gb|EAQ63588.1| sensory box protein [Marinomonas sp. MED121] Length = 729 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 H A+++ Y SIV FD+DYFK+ ND +GH GD+ + + D + + R Sbjct: 587 HQAYLTHKTLY----SIVLFDVDYFKKFNDFYGHQAGDEALIQVVDCIGEHLKKADKIYR 642 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233 GGEEF ++ EA +A +L + + I + +T+SAG AE + Sbjct: 643 YGGEEFVCVLPNVTQDEALTMAKNLIEKVAALTIEHQASHYQLVTVSAGCAEVMAQDKTW 702 Query: 234 STIIYRADQALYVAKKSGRNRV 255 ++ R+D+ALY AK +GRNR Sbjct: 703 EQVVSRSDKALYSAKDAGRNRA 724 >gi|194437157|ref|ZP_03069256.1| sensory box-containing diguanylate cyclase [Escherichia coli 101-1] gi|253773658|ref|YP_003036489.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161420|ref|YP_003044528.1| putative diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli B str. REL606] gi|194424140|gb|EDX40128.1| sensory box-containing diguanylate cyclase [Escherichia coli 101-1] gi|242377117|emb|CAQ31845.1| diguanylate cyclase, transcriptional modulator [Escherichia coli BL21(DE3)] gi|253324702|gb|ACT29304.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973321|gb|ACT38992.1| predicted diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli B str. REL606] gi|253977534|gb|ACT43204.1| predicted diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli BL21(DE3)] gi|323962408|gb|EGB57991.1| GGDEF domain-containing protein [Escherichia coli H489] gi|323973549|gb|EGB68734.1| GGDEF domain-containing protein [Escherichia coli TA007] Length = 410 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|331657395|ref|ZP_08358357.1| putative GGDEF domain protein [Escherichia coli TA206] gi|331055643|gb|EGI27652.1| putative GGDEF domain protein [Escherichia coli TA206] Length = 410 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLALAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|307137983|ref|ZP_07497339.1| putative diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli H736] Length = 410 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|307718267|ref|YP_003873799.1| hypothetical protein STHERM_c05610 [Spirochaeta thermophila DSM 6192] gi|306531992|gb|ADN01526.1| hypothetical protein STHERM_c05610 [Spirochaeta thermophila DSM 6192] Length = 387 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 14/164 (8%) Query: 106 IDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D +G+ N S F+ L Y L ++ D+D+FK ND +GH GD+V+ + Sbjct: 206 MDFKTGIYNASFFMRRLEEELYRVKRYGGHLGLIILDVDHFKLFNDRYGHLAGDEVLISI 265 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + R GGEEF G++ A I+A +R IE ++ +H+ Sbjct: 266 ARNIKQNLRKGDVAARYGGEEFVVLLPGANRNAAYIVAERVRHSIELMKVYFED-KILHV 324 Query: 219 TISAGIAERCHK----EPISTIIYRADQALYVAKKSGRNRVVCF 258 T+S G+ C + +P +I ADQALY++K+ GRNR + Sbjct: 325 TVSVGVTS-CTRYRLLDP-RKLIEEADQALYLSKERGRNRTTVY 366 >gi|298530375|ref|ZP_07017777.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] gi|298509749|gb|EFI33653.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] Length = 301 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 87/174 (50%), Gaps = 17/174 (9%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQINDNFGH 148 Y + Q + +D L+ + N F L G N LS+ DID FKQ ND++GH Sbjct: 128 KYKLLEQKANLDGLTEIPNRRCFEEVLAREWQRGKRNASPLSVAMLDIDCFKQYNDHYGH 187 Query: 149 PVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GD +V + D L + GR GGEEF + + + ++A +R IE Sbjct: 188 QTGDIALQRVARSIMDSLKRASD---YAGRYGGEEFVILMPETPLESSLMVAERIRSDIE 244 Query: 205 NSQINIS-SGPSIHITISAGIAE-RCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 + I + S + H+T+S G+A R + E II RADQ +Y AK+SGRNRV Sbjct: 245 SLAIPHALSSIAPHLTVSIGVASTRDYAESGPEEIIKRADQHMYTAKQSGRNRV 298 >gi|157155005|ref|YP_001462650.1| sensory box-containing diguanylate cyclase [Escherichia coli E24377A] gi|191165081|ref|ZP_03026925.1| sensory box-containing diguanylate cyclase [Escherichia coli B7A] gi|300822490|ref|ZP_07102629.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7] gi|300900112|ref|ZP_07118306.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1] gi|309796956|ref|ZP_07691357.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] gi|331677130|ref|ZP_08377826.1| putative GGDEF domain protein [Escherichia coli H591] gi|332279459|ref|ZP_08391872.1| sensory box-containing diguanylate cyclase [Shigella sp. D9] gi|157077035|gb|ABV16743.1| sensory box-containing diguanylate cyclase [Escherichia coli E24377A] gi|190904853|gb|EDV64558.1| sensory box-containing diguanylate cyclase [Escherichia coli B7A] gi|300356391|gb|EFJ72261.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1] gi|300524906|gb|EFK45975.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7] gi|308119484|gb|EFO56746.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7] gi|323185491|gb|EFZ70852.1| hypothetical protein ECOK1357_0853 [Escherichia coli 1357] gi|331075819|gb|EGI47117.1| putative GGDEF domain protein [Escherichia coli H591] gi|332101811|gb|EGJ05157.1| sensory box-containing diguanylate cyclase [Shigella sp. D9] Length = 430 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|194425990|ref|ZP_03058546.1| sensory box-containing diguanylate cyclase [Escherichia coli B171] gi|218553900|ref|YP_002386813.1| putative diguanylate cyclase [Escherichia coli IAI1] gi|218694916|ref|YP_002402583.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein [Escherichia coli 55989] gi|260843689|ref|YP_003221467.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009] gi|260855040|ref|YP_003228931.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368] gi|260867789|ref|YP_003234191.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128] gi|293414667|ref|ZP_06657316.1| ydaM protein [Escherichia coli B185] gi|194416045|gb|EDX32311.1| sensory box-containing diguanylate cyclase [Escherichia coli B171] gi|218351648|emb|CAU97363.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein [Escherichia coli 55989] gi|218360668|emb|CAQ98229.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein [Escherichia coli IAI1] gi|257753689|dbj|BAI25191.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368] gi|257758836|dbj|BAI30333.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009] gi|257764145|dbj|BAI35640.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128] gi|291434725|gb|EFF07698.1| ydaM protein [Escherichia coli B185] gi|320186795|gb|EFW61516.1| hypothetical protein SGF_01001 [Shigella flexneri CDC 796-83] Length = 410 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|126090207|ref|YP_001041688.1| hypothetical protein Sbal_4570 [Shewanella baltica OS155] gi|126174500|ref|YP_001050649.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS155] gi|125997705|gb|ABN61780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS155] gi|125999863|gb|ABN63933.1| hypothetical protein Sbal_4570 [Shewanella baltica OS155] Length = 749 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 9/162 (5%) Query: 107 DCLSGLLNHSAF---ISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +A I SL S S + D+D FKQ+ND GH GD ++ + Sbjct: 318 DSLTGLANRNALFKLIQSLITSDSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVVR 377 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 Q+ M RLGG+EFA G +++E A LA + K + + ++ G ++ + Sbjct: 378 QICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETINKHVAKRYV-LADGKGVYSS 436 Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S GIA + ++ ADQA+Y++K +GRNR F++ Sbjct: 437 VSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478 >gi|295699114|ref|YP_003607007.1| diguanylate cyclase [Burkholderia sp. CCGE1002] gi|295438327|gb|ADG17496.1| diguanylate cyclase [Burkholderia sp. CCGE1002] Length = 607 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 11/181 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 + L + + L+ D L+GL N F+ L + E L+++F D+D FKQI Sbjct: 396 MDALHSKQSELVHLASHDVLTGLPNRMLFMQKLENAIEEARFRREGLAVLFVDLDRFKQI 455 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH VGDKV+ ++ +L V V RLGG+EF L + A + +I Sbjct: 456 NDQFGHSVGDKVLVAVARRLKDVLYAGDVVARLGGDEF--IVLIEGRRAAEVTPEIAERI 513 Query: 203 IENSQINIS-SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ +S G S+ + S GI+E H ++ AD A+Y AK GR + + D Sbjct: 514 MDALNKTLSVDGNSMTVGASIGISEFPHDSGNAEELLLNADAAMYAAKSGGRCGYLRYQD 573 Query: 261 I 261 + Sbjct: 574 L 574 >gi|187922244|ref|YP_001893886.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] gi|187713438|gb|ACD14662.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] Length = 373 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 78/159 (49%), Gaps = 16/159 (10%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N AF L+++ D+D+FK IND +GH VGDKV+ Sbjct: 207 DPLTGVFNRRAFAEIYQREYQVAQRTGGTLALLIVDLDHFKAINDKYGHDVGDKVLVDFC 266 Query: 160 DQ--LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + V+V GT M RLGGEEFA G S ++A+ A +R + N G Sbjct: 267 RRANAVLVNGTSM--ARLGGEEFAVLLRGVSLEDASAQAERIRLSLLQDGDNELPG---- 320 Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 T S G+A + ++ AD ALY AK+ GRNRV Sbjct: 321 YTCSVGVATTAKDGSALEQLLRVADDALYHAKREGRNRV 359 >gi|119469568|ref|ZP_01612472.1| GGDEF domain protein [Alteromonadales bacterium TW-7] gi|119447103|gb|EAW28373.1| GGDEF domain protein [Alteromonadales bacterium TW-7] Length = 313 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 8/160 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVI 155 L+ ID L+GL N ++ L + L+ ++ D+D FK++ND +GH GD+ + Sbjct: 152 LATIDPLTGLPNRRFTMNKLSEFKLALTKEQTPFVLILCDVDNFKKVNDEYGHSFGDEAL 211 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L++ L R GGEEF A + ++N + ++ +N +S S Sbjct: 212 IHLANILKQHIPNNAVASRWGGEEFLIAIPNVFNAKGVEISNKIHAALKQFPVN-TSFAS 270 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +TIS G+ + + I I RAD+ LY AK+ G+NR Sbjct: 271 LSLTISMGVVQSHESDSIDIDIKRADELLYKAKEQGKNRT 310 >gi|92113441|ref|YP_573369.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043] gi|91796531|gb|ABE58670.1| diguanylate cyclase [Chromohalobacter salexigens DSM 3043] Length = 608 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 107 DCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +L + E+ L ++ DID+FK IND++GH +GD+ + ++ Sbjct: 447 DALTGLYNRRFLDETLARELARAERQAVPLCVLMLDIDHFKPINDDYGHALGDRALVAVA 506 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L V R GGEEF G+ A + LR+ + + + I +T Sbjct: 507 ELLNAHVRRDDIVCRYGGEEFVIIMPGAGLDAAQRRGDHLRRCVSALDVEANVPAPIRLT 566 Query: 220 ISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S G+A C H + +++ AD ALY AK+ GRNR+ S Sbjct: 567 VSLGLA--CYPQHGDNAEHLLHSADMALYEAKQGGRNRLTIAS 607 >gi|325920713|ref|ZP_08182619.1| diguanylate cyclase with GAF sensor [Xanthomonas gardneri ATCC 19865] gi|325548765|gb|EGD19713.1| diguanylate cyclase with GAF sensor [Xanthomonas gardneri ATCC 19865] Length = 356 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 13/162 (8%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N AF ++L + E+ LS+ D+D+FK +ND GH GD V+ Sbjct: 200 TRTDPLTGLPNRRAFAAALAAATEQTRAAGQPLSVALLDVDHFKTVNDVHGHDQGDVVLR 259 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 LS L + R GGEEF +A + LR+ + I ++ Sbjct: 260 ELSALLRAHVAGAGTIARYGGEEFVLLLPNVDLLQARVQCEYLRQSVAVMTI------AL 313 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +T+S G+A +E + +I RADQALY AK+ GR++VV Sbjct: 314 PVTVSIGVATLHPQENVEAVIKRADQALYAAKRGGRDQVVAL 355 >gi|320180216|gb|EFW55151.1| hypothetical protein SGB_02534 [Shigella boydii ATCC 9905] Length = 410 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|326319510|ref|YP_004237182.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376346|gb|ADX48615.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 357 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 11/175 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143 +E+ +++ + + D L+GL N +A I+ G+ LS++ DID+FK++N Sbjct: 173 EEIRALQDQLQEQAMRDPLTGLYNRRHLDATLAARIAQCGARGLPLSLLMIDIDHFKRVN 232 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD ++ L+ L R GGEEF + A A LR+ Sbjct: 233 DTHGHAAGDAMLQALAQLLQRHVRVQDLACRHGGEEFVLLLPETPLTIARERAEALRQAF 292 Query: 204 ENSQINISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+ GP ++ T+S G++ H + ++ RAD+ALY AK GRNRV Sbjct: 293 EALQVR--HGPDALSTTLSCGVSAFPQHADEPHALLARADEALYSAKVQGRNRVA 345 >gi|264678089|ref|YP_003277996.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262208602|gb|ACY32700.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 609 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 7/170 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 + L+ D L+GL N A +L + L++ F D+D FKQ+ND GH GD+V+ Sbjct: 440 NHLANHDALTGLANRRALEETLNQELADGQMLAVCFMDLDGFKQVNDTQGHDAGDEVLRV 499 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ +L V RLGG+EF + L + + +++ + + I ++ G Sbjct: 500 VAARLTAQARAGDCVARLGGDEFVVLLSGLHTPGEAMSVMKRCMEAV--RQPIALNGGVM 557 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + + S GI+ + ++ AD+A+Y AK +G+ R+V SD+ ++ Sbjct: 558 VQVGSSIGISISTADSSSANLMQSADEAMYSAKHAGKGRIVQHSDLSQDS 607 >gi|255100052|ref|ZP_05329029.1| putative signaling protein [Clostridium difficile QCD-63q42] gi|255305939|ref|ZP_05350111.1| putative signaling protein [Clostridium difficile ATCC 43255] Length = 383 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y + + D L+ + N F + + ++K ++ D+D FK+INDNFGHP Sbjct: 208 KYEELRTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKKDALFIIDLDDFKEINDNFGHP 267 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQI 208 GD V+ +D++ FG+ VGR+GG+EF +E A +L +++ ++ Sbjct: 268 FGDFVLKTFADKIQTSFGSKDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDNYT 327 Query: 209 NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 ++S S ++S GIA R ++ S + AD+ALY K SG+N F + Sbjct: 328 DLSF--SFDASVSIGIA-RYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEE 378 >gi|110641574|ref|YP_669304.1| hypothetical protein ECP_1394 [Escherichia coli 536] gi|254792934|ref|YP_003077771.1| putative diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli O157:H7 str. TW14359] gi|261224335|ref|ZP_05938616.1| predicted diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli O157:H7 str. FRIK2000] gi|261257411|ref|ZP_05949944.1| predicted diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli O157:H7 str. FRIK966] gi|161788956|sp|Q8X8Q3|YDAM_ECO57 RecName: Full=Uncharacterized protein ydaM gi|110343166|gb|ABG69403.1| hypothetical protein YdaM [Escherichia coli 536] gi|254592334|gb|ACT71695.1| predicted diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli O157:H7 str. TW14359] Length = 410 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|332529867|ref|ZP_08405819.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC 19624] gi|332040661|gb|EGI77035.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC 19624] Length = 1018 Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N F L + ++ +++FFD+D FK IND FGH GD V+ Sbjct: 585 LAERDALTGLFNRRRFEDELARFIQESQRRHRHGALLFFDLDEFKHINDTFGHRAGDAVL 644 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ ++ + + RLGG+EFA + ++EA LA + + I + G + Sbjct: 645 IRVASEVGALTRRNELLCRLGGDEFAVLMPDARQEEAEQLAERIVRAIALIPFRL-DGQN 703 Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253 + +T S GIA H ++ AD A+Y AK+SG+N Sbjct: 704 LRLTSSLGIALYPHGSVSAEELVAHADTAMYQAKESGKN 742 >gi|325969865|ref|YP_004246056.1| diguanylate cyclase [Spirochaeta sp. Buddy] gi|324025103|gb|ADY11862.1| diguanylate cyclase [Spirochaeta sp. Buddy] Length = 507 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 2/125 (1%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + FD+DYFKQIND +GH +GD+ + LS + V T + R GG+EF + Sbjct: 379 VALFDVDYFKQINDTYGHDIGDRCLMQLSKAIAQVICTEKSLFRWGGDEFLIICPFIPQD 438 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249 E + L + +++ I + G +I TIS GI+ E I+ RAD+ALY AK+ Sbjct: 439 ELDRVKKTLLETAKSTSI-VHEGITITFTISVGISSFVSSDESEEQILKRADKALYRAKQ 497 Query: 250 SGRNR 254 GRNR Sbjct: 498 LGRNR 502 >gi|319787502|ref|YP_004146977.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1] gi|317466014|gb|ADV27746.1| diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1] Length = 365 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 13/159 (8%) Query: 104 SRIDCLSGLLNHSAFI----SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N + ++LG E+ LS+ D+D+FK IND+ GHP GD+V+ Sbjct: 209 TRTDQLTGLPNRRGYGELMGAALGHAEEEGTPLSVAIVDLDHFKNINDSLGHPEGDRVLV 268 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L R GGEEFA + ++A + + + + ++ SG Sbjct: 269 RVAQVLAEQMKDVGLAARYGGEEFAPLLPATGLEQAREHCHAVCDAV--AAMDDCSG--- 323 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G+A+ E + RAD ALY AK GRNRV Sbjct: 324 -VTVSIGVAQWQPGELPGQALSRADAALYRAKLGGRNRV 361 >gi|222033145|emb|CAP75885.1| Uncharacterized protein ydaM [Escherichia coli LF82] Length = 410 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|220935617|ref|YP_002514516.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] gi|219996927|gb|ACL73529.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] Length = 651 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 18/208 (8%) Query: 67 ENLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISS 121 + S+ I + TI L +SG +L EL ++ + D L+GL+N F + Sbjct: 443 QEYSVKITTSTIRAGLSRVSGCVLVIHDVTELRTLARQLKFQAAHDPLTGLVNRREFETR 502 Query: 122 L-----GSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 L GS + ++F D+D+FK IND GH GD+V+ ++D L + R Sbjct: 503 LSRAVDGSQKSGQTHVLIFLDLDWFKAINDTLGHAAGDQVLREVADMLERQVRSTDTAAR 562 Query: 175 LGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKE 231 +GG+EF L + E EA I +A LR I +S G + + +S G+ +R Sbjct: 563 IGGDEFGILLL-NCELEAGIAVAEKLRDAIAGYSY-VSGGETYRVGVSQGLVLIDR-QSG 619 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259 + I+ AD+A Y AK+ GRNR +S Sbjct: 620 NLGAILKAADEACYTAKEHGRNRYHVYS 647 >gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [Herminiimonas arsenicoxydans] gi|133737742|emb|CAL60787.1| conserved hypothetical protein; putative GGDEF and Cyclic nucleotide-binding domains [Herminiimonas arsenicoxydans] Length = 322 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 8/162 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 QLS +D L+GL N + L E+ LS++ D+DYFK+ ND +GH +GD Sbjct: 159 QLSMLDGLTGLYNRAWLNDKLAELVEEAHHAGRPLSLIMIDLDYFKKFNDQYGHQMGDHA 218 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSG 213 + + L F R GGEE S+ ++A L ++ E Sbjct: 219 LRVAAGVLNAALRPSDFAVRYGGEELTVILPDSNATTGRMVAQRLCERMREAVVFEDMHV 278 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P H+T S GIA + ++ RAD ALY AK++GRN++ Sbjct: 279 PLPHLTASFGIATLDAQHDQEDLVTRADAALYRAKEAGRNQI 320 >gi|152994177|ref|YP_001339012.1| response regulator receiver modulated diguanylate cyclase [Marinomonas sp. MWYL1] gi|150835101|gb|ABR69077.1| response regulator receiver modulated diguanylate cyclase [Marinomonas sp. MWYL1] Length = 306 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 15/183 (8%) Query: 94 FISYNRI-SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDN 145 I+ +RI +LS ID L+ L N + ++ S NE LS+ DID FKQ ND Sbjct: 123 LINQHRILERLSTIDPLTSLANRRKYEETIRSEWKLMEEINETLSLAVIDIDNFKQYNDF 182 Query: 146 FGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GDKV+ ++ L F V R GGEEF A +S++EA N ++ Sbjct: 183 YGHAAGDKVLQKVAAILANNFKHNSNLVARYGGEEFVAIMPRTSKKEALQRLNKCISEVQ 242 Query: 205 NSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV----VCF 258 I +TISAG++ + ++ AD+ALY+AK G+N+V V Sbjct: 243 EIAITCKKENDSVVTISAGVSSIIPNDGFKFESLFAAADEALYLAKYEGKNQVKWKNVTT 302 Query: 259 SDI 261 SDI Sbjct: 303 SDI 305 >gi|126698599|ref|YP_001087496.1| putative signaling protein [Clostridium difficile 630] gi|115250036|emb|CAJ67856.1| Two-component sensor histidine kinase [Clostridium difficile] Length = 537 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 16/176 (9%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 Y + + D L+ + N F + + G + L I+ D+D FK+INDNFG Sbjct: 362 KYEELRTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKKDALFII--DLDDFKEINDNFG 419 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206 HP GD V+ +D++ FG+ VGR+GG+EF +E A +L +++ ++ Sbjct: 420 HPFGDFVLKTFADKIQTSFGSKDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDN 479 Query: 207 QINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 ++S S ++S GIA R ++ S + AD+ALY K SG+N F + Sbjct: 480 YTDLSF--SFDASVSIGIA-RYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEE 532 >gi|160873802|ref|YP_001553118.1| diguanylate cyclase [Shewanella baltica OS195] gi|160859324|gb|ABX47858.1| diguanylate cyclase [Shewanella baltica OS195] gi|315266026|gb|ADT92879.1| diguanylate cyclase [Shewanella baltica OS678] Length = 466 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 14/177 (7%) Query: 92 ELFISYNR----ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140 L+++ R + Q S D L+GL N S L + E L ++ D+D+FK Sbjct: 273 RLYVATQRANESLYQQSVKDTLTGLFNRRYLESQLAIHIDHAKRHKEPLCLLVLDVDHFK 332 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND GH GD + ++ QL P F+ R GGEEF + ++ +A L Sbjct: 333 AFNDQHGHLAGDDCLVTVAKQLEQSLYRPADFIARYGGEEFIVVLPHTDAKDGMQIAERL 392 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRV 255 R + +I G + +TIS G A H E + +++ AD ALY AK +GRN V Sbjct: 393 RLNVSAEKIEY-QGQLLSVTISIGCAVLRHSEETAQSLLIAADSALYQAKAAGRNCV 448 >gi|77917713|ref|YP_355528.1| putative sensory transduction system, regulatory protein [Pelobacter carbinolicus DSM 2380] gi|77543796|gb|ABA87358.1| putative sensory transduction system, regulatory protein [Pelobacter carbinolicus DSM 2380] Length = 536 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 14/177 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL + R++ LS D L+G+ N +F L ++ LS++ DID+FK ND Sbjct: 347 ELDEANRRLASLSLTDGLTGIANRRSFDDHLAQEWKRALRDRHPLSLIMVDIDHFKAYND 406 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD + ++ L V P V R GGEEF A L ++ A L R + Sbjct: 407 YYGHLAGDDCLRQVARMLQSVVARPGDLVARYGGEEF-ALILPQTDHGAKSLGESCRAAV 465 Query: 204 ENSQINISSGP-SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I + P +T+S G+A +P S +I ADQA+Y AK GR+ VV Sbjct: 466 AGGKIPHHASPVKPVVTVSVGVATMIPHVEDDP-SQLIKAADQAMYRAKLLGRDHVV 521 >gi|89108189|ref|AP_001969.1| predicted diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli str. K-12 substr. W3110] gi|90111253|ref|NP_415857.2| diguanylate cyclase, csgD regulator [Escherichia coli str. K-12 substr. MG1655] gi|170081020|ref|YP_001730340.1| diguanylate cyclase domain-containing signalling protein [Escherichia coli str. K-12 substr. DH10B] gi|238900576|ref|YP_002926372.1| putative diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli BW2952] gi|161789052|sp|P77302|YDAM_ECOLI RecName: Full=Probable diguanylate cyclase YdaM; Short=DGC gi|85674914|dbj|BAA14945.2| predicted diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli str. K12 substr. W3110] gi|87081881|gb|AAC74423.2| diguanylate cyclase, csgD regulator [Escherichia coli str. K-12 substr. MG1655] gi|169888855|gb|ACB02562.1| predicted diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli str. K-12 substr. DH10B] gi|238862243|gb|ACR64241.1| predicted diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli BW2952] gi|260449525|gb|ACX39947.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli DH1] gi|309701642|emb|CBJ00949.1| putative signaling protein [Escherichia coli ETEC H10407] gi|315135982|dbj|BAJ43141.1| putative diguanylate cyclase, GGDEF domain signalling protein [Escherichia coli DH1] gi|315619424|gb|EFU99968.1| uncharacterized protein ydaM [Escherichia coli 3431] gi|323937667|gb|EGB33935.1| GGDEF domain-containing protein [Escherichia coli E1520] gi|323942288|gb|EGB38459.1| GGDEF domain-containing protein [Escherichia coli E482] Length = 410 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|119470911|ref|ZP_01613495.1| hypothetical protein ATW7_00210 [Alteromonadales bacterium TW-7] gi|119445933|gb|EAW27213.1| hypothetical protein ATW7_00210 [Alteromonadales bacterium TW-7] Length = 511 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 17/167 (10%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNFGHPVGDK 153 S++D L+ L N +AF YN ++ ++V D+D+FK IND FGH GD Sbjct: 350 SQLDGLTKLPNRAAFDER---YNHEMHLFNVQQSNVTLVVIDVDHFKSINDRFGHTAGDI 406 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L F+ R GGEEF ++ A LRK+I++ Sbjct: 407 TLQVIAKALQKSIRKSDFIARYGGEEFVLLMTETTVDNAVAPLEKLRKVIKSIPFKFKD- 465 Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I ITIS G + + PI RAD ALY AK SGR+R +C S Sbjct: 466 KQIEITISVGATQLKKGDTPIKA-FDRADDALYEAKNSGRDR-LCIS 510 >gi|322834528|ref|YP_004214555.1| diguanylate cyclase [Rahnella sp. Y9602] gi|321169729|gb|ADW75428.1| diguanylate cyclase [Rahnella sp. Y9602] Length = 364 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 22/240 (9%) Query: 36 SIFIATVIFIANIFLFY-----------IGLTPFYGLEYILVENLSLVIISITISLLL-- 82 SIF + I +++ FL + I L F +E IL +SL +I + + L+ Sbjct: 108 SIFFISAIALSDNFLAFCLHAVPSTLCVIFLDDFQHVERILF-TVSLPLIGLWLHHLMLK 166 Query: 83 --GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDID 137 + ++ L+ + S LS +D L+GL N + L + + S ++ DID Sbjct: 167 RSDEFTRRMVSNLYSEREKFSDLSMLDPLTGLYNRRGLQNKLETLFNQDSGHYVMLLDID 226 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK NDN+GH +GD+ + +S + + V R GGEEF ++ A +A Sbjct: 227 HFKAYNDNYGHTMGDQALVRVSAAIRDAVRSRDVVVRYGGEEFLVLMSNVKQEHAVRMAE 286 Query: 198 DLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ + I + S H+T+SAG+A + I + +AD +LY AK SGRN++ Sbjct: 287 RIQNKVLGLNIPHLFNVEVSTHVTVSAGLAALEDGDFIKA-LGKADASLYNAKNSGRNKI 345 >gi|289677667|ref|ZP_06498557.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5] gi|330901317|gb|EGH32736.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330941309|gb|EGH44169.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 332 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK +ND +GH GD V+ +++ GR+GGEEFAA G + Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247 A +A L++ I+ S G + IT S G+ +P + T+ RAD A+Y A Sbjct: 263 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGADDPSLETLYGRADAAMYQA 321 Query: 248 KKSGRNRVV 256 K+ G+N++V Sbjct: 322 KRQGKNQIV 330 >gi|260893212|ref|YP_003239309.1| diguanylate cyclase/phosphodiesterase [Ammonifex degensii KC4] gi|260865353|gb|ACX52459.1| diguanylate cyclase/phosphodiesterase [Ammonifex degensii KC4] Length = 469 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 7/173 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 Y + L+ D L+GL N + L + +++F D+D FK +ND GH Sbjct: 42 YRSLRFLATHDFLTGLPNRYLLEARLKKALARARRGHQGALLFLDLDNFKLVNDTLGHGA 101 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ + F+ + L + R+GG+EFA G +EA +A LR++++ + + I Sbjct: 102 GDRALRFVVELLRRNLRKGDLLARVGGDEFAVLLEGVELEEARAVAERLRQVVDETPVVI 161 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 G + ++ +S GI K + + RAD ALY AK+ G N V E+ Sbjct: 162 -DGHTFNLGLSIGITPLDGKMDVQKALGRADAALYAAKERGGNACVVVGPGED 213 >gi|168206892|ref|ZP_02632897.1| GGDEF domain protein [Clostridium perfringens E str. JGS1987] gi|170661676|gb|EDT14359.1| GGDEF domain protein [Clostridium perfringens E str. JGS1987] Length = 545 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%) Query: 99 RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R S+L + D L + N ++I++L + +S + D+DYFK NDN+GH GD + Sbjct: 372 RDSKLDSLKDWLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFI 431 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 + ++ L V R GGEEF G+S+ + A +++ ++N I S Sbjct: 432 LKSIASVLEKNSRKEDIVARYGGEEFCVLLKGASKYSSINYAKRIKENLDNLNIKHKYSK 491 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S H+T S GI K + I +D+ALY++K GRN D Sbjct: 492 TSDHVTFSIGIYTTYTKNDLKNAIKFSDKALYISKTRGRNTYTYLED 538 >gi|166711280|ref|ZP_02242487.1| response regulator [Xanthomonas oryzae pv. oryzicola BLS256] Length = 494 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 16/200 (8%) Query: 71 LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125 +V+ ++ +LLLG ++ L+ + + ++S + +D L+G+ N AF L Sbjct: 294 IVVAALGCALLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDDRLSRALQ 352 Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEE 179 LS++ D+D+FK ND +GH GD + ++ + V R GGEE Sbjct: 353 DAIRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEE 412 Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235 F + A LA+ +R + E +++SS S H+T+S G+A + P+S Sbjct: 413 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNA 472 Query: 236 IIYRADQALYVAKKSGRNRV 255 I++ AD ALY AK+ GRNR Sbjct: 473 IVHDADSALYRAKQKGRNRT 492 >gi|86750359|ref|YP_486855.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] gi|86573387|gb|ABD07944.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] Length = 420 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 14/168 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 ++S + D L+G+ N F L + L+++ D+D FK++ND +GH V Sbjct: 239 TQLSAFALTDGLTGVGNRRDFDDKLQRFLTGQTNATTPLALLLIDVDRFKRLNDTYGHLV 298 Query: 151 GDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+ + L+ + VV + V R GGEEFAA + A +A +R+ IE ++ Sbjct: 299 GDQCLKLLATAIRCVVSRSGDVVARYGGEEFAAILPATDAATALAIAERIRRAIET--MD 356 Query: 210 ISSGPSIH----ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ P + ++I GIA +I AD ALY AK+SGRN Sbjct: 357 LAGLPKLDERPTVSIGVGIAASGTTMLPHALIEIADAALYAAKQSGRN 404 >gi|15801016|ref|NP_287032.1| hypothetical protein Z1527 [Escherichia coli O157:H7 EDL933] gi|15830525|ref|NP_309298.1| hypothetical protein ECs1271 [Escherichia coli O157:H7 str. Sakai] gi|195935283|ref|ZP_03080665.1| hypothetical protein EscherichcoliO157_02312 [Escherichia coli O157:H7 str. EC4024] gi|254792283|ref|YP_003077120.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. TW14359] gi|12514390|gb|AAG55643.1|AE005302_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13360731|dbj|BAB34694.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|209748584|gb|ACI72599.1| hypothetical protein ECs1271 [Escherichia coli] gi|209748586|gb|ACI72600.1| hypothetical protein ECs1271 [Escherichia coli] gi|209748588|gb|ACI72601.1| hypothetical protein ECs1271 [Escherichia coli] gi|254591683|gb|ACT71044.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str. TW14359] gi|320643017|gb|EFX12218.1| putative diguanylate cyclase [Escherichia coli O157:H- str. 493-89] Length = 452 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 405 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 441 >gi|87120483|ref|ZP_01076377.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121] gi|86164126|gb|EAQ65397.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121] Length = 363 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 12/206 (5%) Query: 62 EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS- 120 + I+V NL+ +I IS + G + + + + + +L+ +D L+G+ N ++ Sbjct: 160 QQIIVRNLTFIITLAAISGATALVVGRLRR----ANSDLRKLAELDELTGIANRRKVLAD 215 Query: 121 SLGSYNEKL----SIVF--FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 ++ Y + + S V+ D+D+FK+IND +GH GD V+ ++ ++ +GR Sbjct: 216 AVNIYADAVINMESCVYAIVDLDHFKKINDTYGHEAGDVVLKSVAAKMDETIRPGDKLGR 275 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-AERCHKEPI 233 GGEEF + + + LR+ + + I G + +T+S G+ A Sbjct: 276 YGGEEFVVIMPDTDIEHGLQEMDRLRQEVSDMLIETEMGVVVPVTLSVGLSAISLETNRY 335 Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259 I+ AD ALY AK+ GRNRV ++ Sbjct: 336 EEILAEADSALYSAKREGRNRVSAYT 361 >gi|296104979|ref|YP_003615125.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059438|gb|ADF64176.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 693 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 15/203 (7%) Query: 64 ILVENLSLVIISIT--ISLLLGYISG--SILKELFISYNR-ISQLSRIDCLSGLLNH--- 115 +LV ++L I+ IT +S+L + S+L NR ++QL+ D L+ L N Sbjct: 216 VLVSVVALAILGITLLVSMLDARLQARTSLLASSLAEANRELAQLALQDTLTRLPNRILL 275 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 I+ +++F D+D FK +ND +GH VGDK++ ++ +L++ Sbjct: 276 EDRLDQAINKADREGTHFALMFMDLDGFKTVNDAYGHDVGDKLLVAVTQRLLLPLKGQYT 335 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK- 230 + R+GG+EF A +AA LAN L + I +S N+ + +T+S GIA H Sbjct: 336 LARIGGDEFVLLAEVGGPDDAASLANALVRTI-DSPFNVDPYKLV-VTLSIGIALYPHDG 393 Query: 231 EPISTIIYRADQALYVAKKSGRN 253 + +++ AD A+Y K GRN Sbjct: 394 KTDRELMFNADAAMYHTKHMGRN 416 >gi|110805762|ref|YP_689282.1| hypothetical protein SFV_1817 [Shigella flexneri 5 str. 8401] gi|110615310|gb|ABF03977.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 410 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|83643391|ref|YP_431826.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83631434|gb|ABC27401.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 826 Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 39/229 (17%) Query: 54 GLTPFYGLEYILVENL---------SLVIISITISLLLGYISGSILKELFISYNRISQLS 104 GLT YG IL N +I+S+ I+ + + +R+ QL+ Sbjct: 342 GLTDIYGRRRILQSNKIPFRFFGKPCALIVSVDIT------------DRVEAQSRVEQLA 389 Query: 105 RIDCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 D L+GL N + F L G+Y +++ D+D FK IND+ GH VGD++ Sbjct: 390 FHDPLTGLPNRNLFYDRLTMDIARSRNHGAYG---ALLLIDLDNFKNINDSLGHSVGDEL 446 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDL--RKIIENSQINI 210 + ++ L + VGRLGG+EF LG + +EA AN + + + E S Sbjct: 447 LRNVAKNLRNCLDEEITVGRLGGDEFTVIMPELGRTPEEAEQNANLIAAKVLSELSTPFF 506 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258 + +T S G+A K+ + +I R AD AL+ AK GRN+V F Sbjct: 507 FNTQEFTVTASMGVALYPDKDANTEVILRYADTALFQAKHEGRNKVTIF 555 >gi|84387369|ref|ZP_00990389.1| GGDEF domain protein [Vibrio splendidus 12B01] gi|84377818|gb|EAP94681.1| GGDEF domain protein [Vibrio splendidus 12B01] Length = 654 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 8/133 (6%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S+V D+D+FK++ND FGH +GD+V+ ++ ++ V R GGEEF GS Sbjct: 521 ISLVILDLDHFKRVNDTFGHDIGDEVLVEVARRVKQHLFPNDVVARWGGEEFVMLLSGSI 580 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQA 243 + E + N +R I + I+ SG S+ +T S G + E+ +++ + AD A Sbjct: 581 DPEQQL--NVIRLAISETPIDTHSG-SLDLTTSIGASIGIAHEQLNQDTYKKYLKAADDA 637 Query: 244 LYVAKKSGRNRVV 256 LY AK+SGRN+V+ Sbjct: 638 LYQAKESGRNQVI 650 >gi|307609672|emb|CBW99179.1| hypothetical protein LPW_09631 [Legionella pneumophila 130b] Length = 367 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 17/182 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK------LSIVFFDIDYFKQIN 143 KEL IS ++ ++ D L+GL N F + +N LS+V D D FK IN Sbjct: 184 KELLISELKVMTIT--DSLTGLYNRRYFDTLFPQEFNRARRNQYFLSLVSIDADNFKLIN 241 Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 DN GHP GDKV+ ++D L +F + + RLGG+EFA ++ + ++ Sbjct: 242 DNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKDTISICQSIKNP 301 Query: 203 IENSQINISSGPS-----IHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 + +N + G + H+T+S GI + +S I AD+ALY AKK G+N++ Sbjct: 302 FKTENLNHNYGSNEQLLMSHVTLSIGIVYIHFESSVSIEHAITAADKALYQAKKKGKNQI 361 Query: 256 VC 257 V Sbjct: 362 VV 363 >gi|317048561|ref|YP_004116209.1| diguanylate cyclase [Pantoea sp. At-9b] gi|316950178|gb|ADU69653.1| diguanylate cyclase [Pantoea sp. At-9b] Length = 389 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 38/259 (14%) Query: 11 IWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGL-------EY 63 +W +F P +++ + F + A IFL TP +G Y Sbjct: 137 LWRARASLTVTFWPAQMLLWIHLLFHV--------ARIFLDDAVATPVHGAIGGSSFSVY 188 Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118 +++E++ L +I +T ++L +++ E ++++ L D L+ + N A Sbjct: 189 VILESI-LFVIGLTFTIL------AMVNERTQIAHKLASLH--DPLTSVWNRRALFAQAE 239 Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 I+ + V FD+D+FK IND +GH GD+V+ + RLG Sbjct: 240 KIIARRLRQQLPFTAVLFDLDHFKSINDRYGHQQGDRVLIDFCQIAQSLLPEEGQFARLG 299 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIST 235 GEEFAA G SEQ + +I +Q+++ +I T+S G A ++ T Sbjct: 300 GEEFAAILPGDSEQAQMV----CERIRVATQLSLPD--NISYTVSIGYATSSQEDLHFPT 353 Query: 236 IIYRADQALYVAKKSGRNR 254 ++ AD+ALY AK SGRNR Sbjct: 354 LLALADEALYRAKASGRNR 372 >gi|212637035|ref|YP_002313560.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212558519|gb|ACJ30973.1| GGDEF domain protein [Shewanella piezotolerans WP3] Length = 344 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 24/194 (12%) Query: 85 ISGSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGSYNE-------------- 127 ISG +K + + + + Q R+ + GL N IS+ ++E Sbjct: 152 ISGWFIKAVIRDFEKQKLVKQFKRLALIDGLTN----ISNRRHFDEILSQEVRVAERNHH 207 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALG 186 LSI+ DID+FK++ND GH GD + +++ + P V R GGEEF A Sbjct: 208 ALSIILLDIDFFKRLNDTLGHQAGDAQLIKIAEIISSAVNRPRDLVARYGGEEFVIALPN 267 Query: 187 SSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 ++ + A +A ++ ++E +QI + S S +T+S GIA+ +I AD+ LY Sbjct: 268 TNLEGAIRVAEKVKSLLEEAQIVHPCSDVSAQVTLSQGIAQWEPGMSRDQLIKAADRMLY 327 Query: 246 VAKKSGRNRVVCFS 259 AK +GR+ CF Sbjct: 328 RAKSAGRDS-YCFE 340 >gi|197337560|ref|YP_002157973.1| sensory transduction protein kinase [Vibrio fischeri MJ11] gi|197314812|gb|ACH64261.1| sensory transduction protein kinase [Vibrio fischeri MJ11] Length = 345 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 122/272 (44%), Gaps = 33/272 (12%) Query: 7 DFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIA--TVIFIANIFLFYIGLTPFYGLEYI 64 D IW + N+ SP +I + +SI + + IF+ L T + Sbjct: 82 DMTEIWQTYLLNIPEISPLPVII---VLYSIVMCGLSAIFV----LTRSNNTDLASYTCL 134 Query: 65 LVENLSLVIISIT-ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 L +L+ + S+ IS + I+G +L I+ + +L+ ID L+G+ A S + Sbjct: 135 LYSSLTFSLFSVDYISSTMFSIAGLLLLLYIITASH--ELAFIDQLTGIPGRRALESEMK 192 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 +I D+D+FK+ ND +GH GD V+ ++ + G V R GGEEF Sbjct: 193 HLGRTYTIAMLDVDHFKKFNDTYGHDTGDDVLKLVASIMAQTGGNAK-VYRYGGEEFTVL 251 Query: 184 ALGSSEQEAAILANDLRKIIENSQI---NISSGPS-----------------IHITISAG 223 G + +++ +LR+ I + + + S+ P +++TIS G Sbjct: 252 FKGKTAKQSLEYLEELREDIADYDLIIRDTSTRPKDNKEGQAKRGKANKTKVVNVTISIG 311 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +A+ +I AD+ALY AK+ GRN V Sbjct: 312 VADSEDLRKPQLVIKAADEALYRAKEGGRNCV 343 >gi|192289382|ref|YP_001989987.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] gi|192283131|gb|ACE99511.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 502 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 21/172 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ +L+ D L+GL N F +++ + N ++++ D D+FK ND+FGH Sbjct: 328 RRLEELATTDPLTGLTNRRKFDAAIDTEWRRAIRQNTPIALLMIDADHFKAYNDSFGHQA 387 Query: 151 GDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+++ ++ + V V R GGEEFA G + A +A +R+ +E + Sbjct: 388 GDQMLVGIAVCIADTVHRAGDCVARFGGEEFAVLLPGLTAPAAEAIAETIRRKVEEWS-D 446 Query: 210 ISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRVV 256 I G +T+S G+A PI+ ++ AD+ALY AK+ GRNR V Sbjct: 447 IEGG----VTVSIGVASTT---PIAAHQWYDLVEAADRALYAAKELGRNRCV 491 >gi|94500398|ref|ZP_01306930.1| hypothetical protein RED65_16276 [Oceanobacter sp. RED65] gi|94427433|gb|EAT12411.1| hypothetical protein RED65_16276 [Oceanobacter sp. RED65] Length = 1407 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 99 RISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 RI L+ D L+GL N H A + +L+++F D+D FK IND GHP GD+V Sbjct: 968 RIQHLAYFDPLTGLPNRAQMHEALDRLMAKEESQLALLFIDLDRFKPINDTMGHPAGDQV 1027 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIEN-SQINIS 211 + ++ +L G V R+GG+EF A L +EQ + + +I+ Q Sbjct: 1028 LKEVASRLKEAVGAKNLVSRIGGDEFTVIMATLPETEQAIQTIIDVSERILHQMMQPFFI 1087 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253 ++++ S GIA T + R AD A+Y AK G+N Sbjct: 1088 EDRQLYLSASVGIALYPENALSGTDLLRNADTAMYHAKAMGKN 1130 >gi|77918520|ref|YP_356335.1| sensory box histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77544603|gb|ABA88165.1| sensory box histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 581 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D L+GL N + L E LS + D+D FK IND FGH GD Sbjct: 400 LRRIAITDDLTGLYNRGYLLKQLAGKIETAECQSGNLSTLLLDLDNFKWINDTFGHDFGD 459 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ S VGR GGEEF + ++ ++A +RK I++ + + Sbjct: 460 TVLEKASAIFRSCLRGTDLVGRYGGEEFLVILPDTDLEKGQLIAEGIRKSIQSCRWDRE- 518 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ITIS G+ + E + ++ RAD+ LY AK GRNR+ Sbjct: 519 --NFRITISGGLVQYA-GESVEMLLKRADKLLYQAKDLGRNRI 558 >gi|317049523|ref|YP_004117171.1| diguanylate cyclase [Pantoea sp. At-9b] gi|316951140|gb|ADU70615.1| diguanylate cyclase [Pantoea sp. At-9b] Length = 236 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 107 DCLSGLLNHSAFISS--LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ + N SA I L + +++ DID+FK+IND FGHP+GDKVI L ++ Sbjct: 85 DPLTAVWNRSAIIQRIMLTLAHGPAALIILDIDHFKKINDEFGHPMGDKVICELVSRVQA 144 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 +GR+GGEEF +A I+A + + S + + P +T S G+ Sbjct: 145 HCPAEANIGRIGGEEFTVLLPHFRLSDAVIVAGAIHASLNASPLAVL--PGQLVTASLGV 202 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T+ AD ALY AK GRNRV Sbjct: 203 SYGKPGSDFETLYNNADAALYDAKNHGRNRV 233 >gi|271499536|ref|YP_003332561.1| diguanylate cyclase [Dickeya dadantii Ech586] gi|270343091|gb|ACZ75856.1| diguanylate cyclase [Dickeya dadantii Ech586] Length = 241 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 107 DCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ + N SA I + ++ +++ DID+FKQ+ND +GHP GD VI L ++ Sbjct: 84 DPLTDVFNRSAIIDLVDHALEQDQAALIVLDIDHFKQVNDAYGHPTGDAVICSLIARIRD 143 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 V +GR+GGEEF G + A +A + + ++ + P +T S G+ Sbjct: 144 VLQGKGSIGRVGGEEFTILLDGYTLMAAVDIAEHIHASLNHTPLE--PLPDHQVTASFGV 201 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + T+ AD ALY AK GRNRV Sbjct: 202 SWAPPHTGFDTLYGTADAALYRAKHQGRNRV 232 >gi|239907247|ref|YP_002953988.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239797113|dbj|BAH76102.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 290 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 31/201 (15%) Query: 81 LLGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLGSY-------N 126 L +++ I F RI Q LS D L+ L N AF L + Sbjct: 67 LRDWMALPITANPFPYLTRIQQTLKELVFLSEHDPLTKLHNRGAFERILSAELIRSSRSG 126 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAA 184 + L++V D+D FK +ND +GHP GD+V+ + L T + R+GGEEFA Sbjct: 127 QPLALVLLDLDNFKTVNDTYGHPCGDRVLETMGALLAAEKRTYDYAARVGGEEFALILPG 186 Query: 185 LGSSEQEAAILANDLRKIIENSQ----INISSGPSIHITISAGIAERCHKEPIS----TI 236 +G E + ++IE+++ + + +T+SAGIA C K ++ + Sbjct: 187 VGMVRAEGIV-----ERLIESARTLRVVCDGVDTPLCVTLSAGIA--CTKGKVAIGWEKL 239 Query: 237 IYRADQALYVAKKSGRNRVVC 257 AD+ALY AK +G++RV C Sbjct: 240 YAMADEALYAAKAAGKDRVRC 260 >gi|291287632|ref|YP_003504448.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] gi|290884792|gb|ADD68492.1| diguanylate cyclase [Denitrovibrio acetiphilus DSM 12809] Length = 490 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 8/168 (4%) Query: 97 YNR-ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 YNR + +L+ D L+G N F + E S++ DID FK IND GH Sbjct: 315 YNRRLERLAITDELTGSYNRREFSRIYDKAVQWYKKNEEPFSVILVDIDNFKIINDAKGH 374 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD VI ++ + R GG+EF G S + I R + ++ ++ Sbjct: 375 AAGDSVIKAVTRICKNSIRGNDLIARWGGDEFIMLIYGDSNTASTIAERIQRYMSQDEEL 434 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + IT+S GI+E + +I RAD+ALY AK+SGRN+V+ Sbjct: 435 LTITSDIDDITLSIGISEYTVTDSEDSITIRADKALYSAKESGRNKVI 482 >gi|222056656|ref|YP_002539018.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] gi|221565945|gb|ACM21917.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] Length = 845 Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 13/157 (8%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F+ L YNE +++F D+D FK IND+ GH GDK++ +S Sbjct: 425 DILTGLANRMLFMDHLALSISQGHRYNEIQAVMFLDLDRFKSINDSLGHAAGDKLLQLIS 484 Query: 160 DQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +L V R+GG+E+ + E AI L + + I+ G +H Sbjct: 485 GRLKECVRETDTVARIGGDEYNILITQMAHPEDATAIANKILSSMNKPFAID---GHQLH 541 Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 +TIS GI+ E T++ AD ALY AK+ GRN Sbjct: 542 VTISIGISLYPTDGEDAETLLKNADIALYHAKEQGRN 578 >gi|254560441|ref|YP_003067536.1| sensory box-containing diguanylate cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and EAL domains [Methylobacterium extorquens DM4] gi|254267719|emb|CAX23566.1| putative sensory box-containing diguanylate cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and EAL domains [Methylobacterium extorquens DM4] Length = 815 Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 11/172 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+ L+ D L+GL N + F G ++ +++ D+D FK++ND GH GD Sbjct: 376 IAYLATRDPLTGLSNRAVFHDVAGEACTASMRGGPRVHLLYLDLDGFKKVNDTAGHCAGD 435 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ ++D+L V RLGG+EFA G EA ILA + I + + Sbjct: 436 DLLRQVADRLCASVDANAQVFRLGGDEFAILHRGRESAEAEILAEAV--IASLHRPYLIE 493 Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF-SDIE 262 G I +S GIA + ++ +AD ALY AK++GR R CF +D+E Sbjct: 494 GMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWQCFEADLE 545 >gi|253996593|ref|YP_003048657.1| diguanylate cyclase [Methylotenera mobilis JLW8] gi|253983272|gb|ACT48130.1| diguanylate cyclase [Methylotenera mobilis JLW8] Length = 364 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 104/203 (51%), Gaps = 19/203 (9%) Query: 70 SLVIISITISLLL-GYISGSILKELFISYNRISQ----LSRIDCLSGLLNHSAF------ 118 SLV++ + IS+LL Y L E S +++ L+ D L+ L N F Sbjct: 163 SLVVVFLIISILLINYRRTISLFEHASSSQELAEEFGYLAMHDALTHLPNRRNFEQYLKK 222 Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 IS G +K+ +++ D+D FK IND +GH GD + ++ V F+ R+GG Sbjct: 223 SISQAGRSKQKIGLLYMDLDGFKLINDQYGHDAGDDALVGAVAKINHVLRDSDFIARVGG 282 Query: 178 EEFAAAALG-SSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIAERCHK-EPI 233 +EFA A + E ILAN +IIE N+ + +G I + +S GIA + + I Sbjct: 283 DEFALVAHNFNDASELLILAN---RIIEALNTPVIKVTGTDIFMGVSIGIAIYPDQVKSI 339 Query: 234 STIIYRADQALYVAKKSGRNRVV 256 +I AD+A+Y AK +G+N+ V Sbjct: 340 KALISAADEAMYKAKSTGKNQAV 362 >gi|218661629|ref|ZP_03517559.1| hypothetical protein RetlI_20116 [Rhizobium etli IE4771] Length = 306 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 15/180 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L +S ++ L+ D L+G++N AF + N S++ DID FK ND Sbjct: 118 LRLSAEQLRNLAETDGLTGIVNRRAFDEIFARETAGSARKNTPFSLLMVDIDRFKAYNDT 177 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GHP GD+ + +S L P V R GGEEF +S + A I+A + + Sbjct: 178 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLT 237 Query: 205 NSQINISSGPSIHITISAGIAERCH-----KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I S +T S GI+ C + + ++ AD ALY AK GRNR++ S Sbjct: 238 KENILHSGSEFGRVTASIGIS--CATGATLRASPNRLLAEADTALYEAKTQGRNRILAHS 295 >gi|153000566|ref|YP_001366247.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185] gi|151365184|gb|ABS08184.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS185] Length = 749 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 9/162 (5%) Query: 107 DCLSGLLNHSAF---ISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +A I SL S S + D+D FKQ+ND GH GD ++ + Sbjct: 318 DSLTGLANRNALFKLIQSLITSDSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVVR 377 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 Q+ M RLGG+EFA G +++E A LA + K + + ++ G ++ + Sbjct: 378 QICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETINKHVAKRYV-LADGKGVYSS 436 Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S GIA + ++ ADQA+Y++K +GRNR F++ Sbjct: 437 VSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478 >gi|114320525|ref|YP_742208.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii MLHE-1] gi|114226919|gb|ABI56718.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii MLHE-1] Length = 302 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL+N F I Y +++ DID+FK +ND +GH GDKV+ + Sbjct: 148 DPLTGLVNRYHFEELLAREIERGQRYGGGFALIMLDIDHFKAVNDTYGHLEGDKVLRRFA 207 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++L + R GGEEF G+ A LA +R + ++ + +T Sbjct: 208 EELTGKIRAADTLARWGGEEFMLLLPGTDIAGARALAEAIRVAVNGCRMPVPG----QVT 263 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +S G+ + E + ++ R D+ALY AK +GR++VV Sbjct: 264 VSLGVTGYRNGESVWGLLKRVDEALYAAKLAGRDQVVVL 302 >gi|54293856|ref|YP_126271.1| hypothetical protein lpl0912 [Legionella pneumophila str. Lens] gi|53753688|emb|CAH15146.1| hypothetical protein lpl0912 [Legionella pneumophila str. Lens] Length = 377 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 92/183 (50%), Gaps = 19/183 (10%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-YNEK------LSIVFFDIDYFKQIN 143 KEL IS ++ ++ D L+GL N F + +N LS+V D D FK IN Sbjct: 194 KELLISELKVMTIT--DSLTGLYNRRYFDTLFPQEFNRARRNQYFLSLVSIDADNFKLIN 251 Query: 144 DNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 DN GHP GDKV+ ++D L +F + + RLGG+EFA ++ + ++ Sbjct: 252 DNLGHPFGDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKDTISICQSIKNP 311 Query: 203 IENSQINISSGPS-----IHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNR 254 + +N + G + H+T+S GI H E I I AD+ALY AKK G+N+ Sbjct: 312 FKTENLNHNYGLNEQLLMSHVTLSIGIV-YIHFESSVSIEHAITAADKALYQAKKKGKNQ 370 Query: 255 VVC 257 VV Sbjct: 371 VVV 373 >gi|17546264|ref|NP_519666.1| hypothetical protein RSc1545 [Ralstonia solanacearum GMI1000] gi|17428561|emb|CAD15247.1| probable signal transduction eal-ggdef domains transmembrane protein [Ralstonia solanacearum GMI1000] Length = 776 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 7/154 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 NRI QL+ D L+GL N + F + L + +L +++ D+D FK +ND GH GD Sbjct: 336 NRIRQLAHYDTLTGLANRTNFREQLDARLAAPEARLGLLYIDLDGFKLVNDTKGHRAGDA 395 Query: 154 VIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ ++ +L V P M + RLGG+EFA AA LA L + + + + + Sbjct: 396 LLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHDDADRAATLATALIEAL-GAPYALGA 454 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALY 245 ++ I S GIA H ++ RAD ALY Sbjct: 455 DQNVRIGASIGIALAPAHGRDTENLLARADIALY 488 >gi|327193248|gb|EGE60154.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium etli CNPAF512] Length = 843 Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 13/180 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 + EL S +I Q++ D L+ L N S F I+S S ++ ++ DID+FK + Sbjct: 402 VTELNASRQKIHQMAFYDPLTALPNRSLFNDRLRQMITSAVSRGQRAGVMLIDIDHFKVV 461 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLR 200 ND GHPVGD+++ + +L V RLGG+EFA L + + ++ L Sbjct: 462 NDTMGHPVGDELLCQAAARLNASVRDYDTVARLGGDEFAILLPDLRPGDDLGRVASDILD 521 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259 K EN ++ G + ++ S GIA + ++ AD A+Y+AK+SGRN +S Sbjct: 522 KFRENFLLD---GKEVFVSCSVGIALYPDDSAEANDLVKYADSAMYLAKRSGRNSFRFYS 578 >gi|313607994|gb|EFR84100.1| ggdef domain-containing protein [Listeria monocytogenes FSL F2-208] Length = 375 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 7/127 (5%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DID+FK+IND GH G+ V+A S L F R+GGEEFA ++AA Sbjct: 246 DIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAA 305 Query: 194 ILANDLRKIIENSQI--NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250 ++A+ R+ +E ++ N +SG +T+S G+A H ++ ADQALY AK+S Sbjct: 306 LIADFFREEVERAKFPYNPASG---KVTVSIGVASASSHFSTTESLFEAADQALYQAKQS 362 Query: 251 GRNRVVC 257 GRN++ Sbjct: 363 GRNQIAV 369 >gi|331682836|ref|ZP_08383455.1| putative GGDEF domain protein [Escherichia coli H299] gi|331080467|gb|EGI51646.1| putative GGDEF domain protein [Escherichia coli H299] Length = 410 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|239995396|ref|ZP_04715920.1| sensory box protein [Alteromonas macleodii ATCC 27126] Length = 722 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 5/165 (3%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ QL+ D L+GL N ++ IS L + +VF D+D FK INDN GH GD + Sbjct: 294 KLRQLALHDELTGLSNRNSLRESISGLVQKEQHFILVFIDLDGFKAINDNAGHERGDIEL 353 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + L +FG VGR GG+EF A + +E A + L IE I + + Sbjct: 354 QRVGALLTAIFGPIGEVGRWGGDEFIAVLPNQNVEEIAERSERLISQIEEDAITVKTS-E 412 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + ++ S GIAE H + + +++ AD A+Y AK+ G+ + + Sbjct: 413 LRLSASIGIAEFPEHSDNLESLVQCADAAMYRAKELGKGQAFIYE 457 >gi|217963936|ref|YP_002349614.1| ggdef domain protein [Listeria monocytogenes HCC23] gi|217333206|gb|ACK39000.1| ggdef domain protein [Listeria monocytogenes HCC23] gi|307571494|emb|CAR84673.1| GGDEF domain membrane protein [Listeria monocytogenes L99] Length = 375 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 7/127 (5%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DID+FK+IND GH G+ V+A S L F R+GGEEFA ++AA Sbjct: 246 DIDHFKEINDFHGHQAGNTVLAQFSSILKNRTFPPRTMFARIGGEEFAVLLQNVGTEQAA 305 Query: 194 ILANDLRKIIENSQI--NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250 ++A+ R+ +E ++ N +SG +T+S G+A H ++ ADQALY AK+S Sbjct: 306 LIADFFREEVERAKFPYNPASG---KVTVSIGVASASSHFSTTESLFEAADQALYQAKQS 362 Query: 251 GRNRVVC 257 GRN++ Sbjct: 363 GRNQIAV 369 >gi|217972032|ref|YP_002356783.1| diguanylate cyclase with extracellular sensor [Shewanella baltica OS223] gi|217497167|gb|ACK45360.1| diguanylate cyclase with extracellular sensor [Shewanella baltica OS223] Length = 484 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 13/176 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139 ++ ++L S + LS D L+ L N F + L NE+ + +V DIDYF Sbjct: 310 TLRQQLEASNAELEFLSTHDPLTKLYNRHYF-NRLFINNEQHDKSARAGMCLVMIDIDYF 368 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND GH VGD+++ +S L V R GGEEF SS L + Sbjct: 369 KEINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCVRI 428 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I++ Q ++ +T S G+A+ EP+ RAD+ALY AK GRN++ Sbjct: 429 AERIKHYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQM 480 >gi|218704860|ref|YP_002412379.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein [Escherichia coli UMN026] gi|256018406|ref|ZP_05432271.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein [Shigella sp. D9] gi|293404870|ref|ZP_06648862.1| hypothetical protein ECGG_00195 [Escherichia coli FVEC1412] gi|293433704|ref|ZP_06662132.1| ydaM protein [Escherichia coli B088] gi|298380514|ref|ZP_06990113.1| ydaM protein [Escherichia coli FVEC1302] gi|307309901|ref|ZP_07589551.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli W] gi|331667740|ref|ZP_08368604.1| putative GGDEF domain protein [Escherichia coli TA271] gi|218431957|emb|CAR12842.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein [Escherichia coli UMN026] gi|291324523|gb|EFE63945.1| ydaM protein [Escherichia coli B088] gi|291427078|gb|EFF00105.1| hypothetical protein ECGG_00195 [Escherichia coli FVEC1412] gi|298277956|gb|EFI19470.1| ydaM protein [Escherichia coli FVEC1302] gi|306909619|gb|EFN40113.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli W] gi|315060595|gb|ADT74922.1| predicted diguanylate cyclase, GGDEF domain signaling protein [Escherichia coli W] gi|323378843|gb|ADX51111.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli KO11] gi|324117464|gb|EGC11370.1| GGDEF domain-containing protein [Escherichia coli E1167] gi|331065325|gb|EGI37220.1| putative GGDEF domain protein [Escherichia coli TA271] Length = 410 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|59713564|ref|YP_206339.1| GGDEF domain-containing protein [Vibrio fischeri ES114] gi|59481812|gb|AAW87451.1| GGDEF domain protein [Vibrio fischeri ES114] Length = 384 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 124/277 (44%), Gaps = 36/277 (12%) Query: 7 DFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIA--TVIFIANIFLFYIGLTPFYGLEYI 64 D IW + N+ SP ++ + +SI + + IF+ L T + Sbjct: 121 DMTEIWQTYLLNIPEISPLPVIV---VLYSIVMCGLSAIFV----LTRSNNTDLASYTCL 173 Query: 65 LVENLSLVIISIT-ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 L +L+ + S+ IS + I+G +L IS + +L+ ID L+G+ A S + Sbjct: 174 LYSSLTFSLFSVDYISSTMFSIAGLLLLLYIISASH--ELAFIDQLTGIPGRRALESEMK 231 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 +I D+D+FK+ ND +GH GD V+ ++ + G V R GGEEF Sbjct: 232 HLGRTYTIAMLDVDHFKKFNDTYGHDTGDDVLKLVASIMAQTGGNAK-VYRYGGEEFTVL 290 Query: 184 ALGSSEQEAAILANDLRKIIENSQI---NISSGPS-----------------IHITISAG 223 G + +++ +LR+ I + + + S+ P +++TIS G Sbjct: 291 FKGKTAKQSLEYLEELREDIADYDLIIRDTSTRPKDNKEGQAKRGKANKTKVVNVTISIG 350 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +A+ +I AD+ALY AK+ GRN C S+ Sbjct: 351 VADSEDLRKPQLVIKAADEALYRAKEGGRN---CVSE 384 >gi|330955584|gb|EGH55844.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7] Length = 202 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK +ND +GH GD V+ +++ GR+GGEEFAA G + Sbjct: 73 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 132 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247 A +A L++ I+ S G + IT S G+ +P + T+ RAD A+Y A Sbjct: 133 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGADDPSLETLYGRADAAMYQA 191 Query: 248 KKSGRNRVV 256 K+ G+N++V Sbjct: 192 KRQGKNQIV 200 >gi|317491060|ref|ZP_07949496.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920607|gb|EFV41930.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 434 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 30/182 (16%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGH 148 ISYN S D ++ L N S + L S E ++++ DID+FK++ND +GH Sbjct: 246 ISYNN----SIRDPMTRLYNRSYYYDVLIQRMKTVSEQEPITLLVADIDHFKRVNDVYGH 301 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+VI +++ L R+GGEEF+ G +A +LA+ +R I + + Sbjct: 302 VTGDRVIQYVAKTLEYSIRKTDIAARIGGEEFSIMLNGIGRADAVLLADRIRMSISD-HM 360 Query: 209 NISSGPSI--HITISAGI---------AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 N + +TIS G+ AE+C + AD A+Y AK+ GR+RVV Sbjct: 361 NSPFAQDVPDKVTISIGVYTVTDNALGAEQC--------VAYADAAMYQAKQEGRDRVVL 412 Query: 258 FS 259 +S Sbjct: 413 YS 414 >gi|294664741|ref|ZP_06730070.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605495|gb|EFF48817.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 955 Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 14/159 (8%) Query: 107 DCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN S + ++ ++ E L++V D+D+FKQ+ND GH VGD V+A + Sbjct: 791 DALTGLLNRSGILEAMAEELQGCAHGEHPLAVVLIDLDHFKQVNDEHGHLVGDAVLAKVG 850 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216 +L VGR GGEE G S+Q + LR I E + + + + Sbjct: 851 ARLTACLRDSDKVGRYGGEELLLLLPGMSQQS----QHRLRAIHEALSLAPYEVGAARPL 906 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G++ + ++++ RAD+ALY AK+SGRNR+ Sbjct: 907 QVTCSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 945 >gi|229028422|ref|ZP_04184544.1| Sensory box/GGDEF [Bacillus cereus AH1271] gi|228732871|gb|EEL83731.1| Sensory box/GGDEF [Bacillus cereus AH1271] Length = 569 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 135 RRLRVSESRYRELAYHDALTSLPNRLQLITTVNEMIADKKEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|163816345|ref|ZP_02207711.1| hypothetical protein COPEUT_02533 [Coprococcus eutactus ATCC 27759] gi|158448342|gb|EDP25337.1| hypothetical protein COPEUT_02533 [Coprococcus eutactus ATCC 27759] Length = 381 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 83/181 (45%), Gaps = 12/181 (6%) Query: 86 SGSILKELFISYNR-ISQLSR--IDCLSGLLNHSAFISSLGSYNEKLS-------IVFFD 135 + +++ + SYNR ++ +S ID ++GL N +F SL E+ + FD Sbjct: 200 TKALMSSIMGSYNRQVTLMSELMIDPMTGLYNRRSFEDSLEKEIERAEQTGAKSYVTIFD 259 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK++ND +GH GD VI L + R GGEEF + + Sbjct: 260 IDHFKEVNDTYGHSNGDIVIKALCKMMKEKSKDMGLAFRYGGEEFVILFHDVELSKVMNI 319 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 D+R + + I T S G+AE E RAD ALY AK+SGRNR Sbjct: 320 VEDIRTEFRCYYFHFMNKDGI--TCSCGVAEYIKGESSKAWFNRADSALYKAKESGRNRT 377 Query: 256 V 256 V Sbjct: 378 V 378 >gi|58581174|ref|YP_200190.1| hypothetical protein XOO1551 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425768|gb|AAW74805.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 840 Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 2/134 (1%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 ++ F D+DYFK +ND FGH VGDK + +D + + ++GRLGG+EFA + Sbjct: 442 ALCFVDMDYFKLVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDL 501 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248 +A L + ++ + G + + S G+ E R +++++ AD A + AK Sbjct: 502 PQARALLEGMHAVLGQPWSH-QGGRPLTPSCSFGVVEIRQSASDVNSLMTAADLACHAAK 560 Query: 249 KSGRNRVVCFSDIE 262 + GRNR+ CF++ + Sbjct: 561 EEGRNRIRCFNETD 574 >gi|21242683|ref|NP_642265.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108155|gb|AAM36801.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306] Length = 948 Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 14/159 (8%) Query: 107 DCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN S + ++ ++ E L++V D+D+FKQ+ND GH VGD V+A + Sbjct: 784 DALTGLLNRSGILEAMAEELQGCAHGEHPLAVVLIDLDHFKQVNDEHGHLVGDAVLAKVG 843 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216 +L VGR GGEE G S+Q + LR I E + + + + Sbjct: 844 ARLTACLRDSDKVGRYGGEELLLLLPGMSQQS----QHRLRAIHEALSLAPYEVGAARPL 899 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G++ + ++++ RAD+ALY AK+SGRNR+ Sbjct: 900 QVTCSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 938 >gi|330862839|emb|CBX72980.1| hypothetical protein YEW_FE22280 [Yersinia enterocolitica W22703] Length = 519 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 104 SRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 ++ D ++GL N ++L + S++ DID+FK+IND++GH VGD+VI L+ Sbjct: 366 AQTDPMTGLYNRRGLATTLEPIVQLGQHFSVIALDIDHFKEINDSYGHDVGDEVIKQLAI 425 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHIT 219 Q+ + R GGEEF + + +A LR +E + NI IT Sbjct: 426 QIRESSRDSDILCRSGGEEFLMLLPSTVPDVSTQVAKRLRHNVEMMVMANIRP-----IT 480 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS G+A + + RAD+ALY AK+ GRNRV Sbjct: 481 ISLGVAFWNGEGTPEDALKRADEALYRAKQQGRNRV 516 >gi|153212575|ref|ZP_01948322.1| GGDEF family protein [Vibrio cholerae 1587] gi|124116446|gb|EAY35266.1| GGDEF family protein [Vibrio cholerae 1587] Length = 312 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS + S+ID L+ L N F S + L ++ FDID+FKQIND +GHP GD Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L R GGEEF LA ++R +E+ + + Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRGYVESHTL-MWQ 264 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+SAG A H +++ ADQAL AK+ GRNRV+ Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309 >gi|78776419|ref|YP_392734.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78496959|gb|ABB43499.1| response regulator receiver modulated diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] Length = 304 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/159 (38%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 107 DCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F L Y E LSI+ DIDYFK NDN+GH +GD+ + ++ Sbjct: 141 DSLTGISNRRYFDEILEQKYREIIREPKNLSIIMIDIDYFKLYNDNYGHWMGDECLTKVA 200 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIH 217 L P V R GGEEF G + A +A L I N + + P S Sbjct: 201 IALKKAIKRPTDVLARYGGEEFVVLLKGVDKDGAKQVAQSLIDSISNLNLAHNFSPVSKI 260 Query: 218 ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254 +TISAG+A + E IS +I +AD LY AK SGRN+ Sbjct: 261 VTISAGVAIKEVDEDISKEDLIKKADAELYRAKNSGRNK 299 >gi|117920655|ref|YP_869847.1| response regulator receiver modulated diguanylate cyclase [Shewanella sp. ANA-3] gi|117612987|gb|ABK48441.1| response regulator receiver modulated diguanylate cyclase [Shewanella sp. ANA-3] Length = 543 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSA-FISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNH+ +++ YN + I D+D+FKQ+ND +GH GDKV+ + Sbjct: 384 DSLTGLLNHTQILVAARRCYNLAKRINSSVCIAMLDLDHFKQVNDTYGHSGGDKVLLAFA 443 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L F+GR GGEEF A N +R+ + + + G +T Sbjct: 444 HLLQQSLRPVDFMGRYGGEEFMLVLPDLPAPLAIAKLNAIRESFSHI-VFVEEGAEFKVT 502 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A + AD+ LY AK++GRNR++ Sbjct: 503 LSGGLAFSTECNEFQDCLLLADKNLYEAKRTGRNRLIT 540 >gi|320323918|gb|EFW80002.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320328055|gb|EFW84060.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 523 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 18/178 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQIND 144 EL I+ N + ++ D L+ L N F ++L S N ++I+ DID+FKQ ND Sbjct: 328 ELNIARNELEIIAHTDSLTHLANRRCFDAALQQEWGRASRNTATIAIILLDIDWFKQYND 387 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199 +GH GD + Q+ + G + R GGEEF + A +A + Sbjct: 388 TYGHLQGDDCL----KQVAGLIGNSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKI 443 Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R +E ++I S+ P +TIS+G+ K+ + + AD+ LY+AK GRNRV Sbjct: 444 RSSVETNRIEHSASPLGKLTISSGVVSINAAEKDGHTAALAEADRLLYLAKTRGRNRV 501 >gi|218700060|ref|YP_002407689.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein [Escherichia coli IAI39] gi|218370046|emb|CAR17822.1| putative diguanylate cyclase, GG[D/E]EF domain signalling protein [Escherichia coli IAI39] Length = 410 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|212213496|ref|YP_002304432.1| sensory box/GGDEF family protein [Coxiella burnetii CbuG_Q212] gi|212011906|gb|ACJ19287.1| sensory box/GGDEF family protein [Coxiella burnetii CbuG_Q212] Length = 577 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 15/181 (8%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137 + SI L + RI+ L+ D L+ L N FI L S + KLS++F D+D Sbjct: 128 LQQSIFHTLLKNEARIAYLASRDQLTSLPNRREFIHRLNEEIGKPKSVDSKLSLLFLDLD 187 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAIL 195 FK IND GH +GD V+ +SD+L + +P+ F+G LGG+EF + + A L Sbjct: 188 NFKDINDALGHHMGDCVLVHVSDRLRKLDLSPLNYFLGHLGGDEFVILLKDLQQDKDATL 247 Query: 196 ANDLRKIIENSQINISSGPS--IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252 K I N+ + +++ S GI + K T++ +AD A+Y AKK GR Sbjct: 248 C---AKKISNAFFESFKIKNFLLYVNFSIGITIDFYSKTDSETLLKKADMAMYQAKKKGR 304 Query: 253 N 253 N Sbjct: 305 N 305 >gi|254247989|ref|ZP_04941310.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] gi|124872765|gb|EAY64481.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] Length = 496 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 14/197 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I +SLLLG + L+ + + + L+R D L+GL N +F L + + Sbjct: 304 IALSLLLG----AQLRRRMRAESELVLLARTDGLTGLSNRRSFGEVLDNEWRRARRARSV 359 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 S++F D+D FK ND +GH GD +A ++ + P R GGEEF + Sbjct: 360 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADTAARYGGEEFVVLLPDT 419 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALY 245 + AA +A +R I+ + + +T S G+A + +I AD+ALY Sbjct: 420 PQTGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPDQEGQPDAVIKAADEALY 479 Query: 246 VAKKSGRNRVVCFSDIE 262 AK +GRN+V E Sbjct: 480 YAKATGRNKVAALQPAE 496 >gi|119945531|ref|YP_943211.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii 37] gi|119864135|gb|ABM03612.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii 37] Length = 654 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 5/165 (3%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 SY+ ++ L L+ L + S N L+I+F D+D FK IND+ GH VGD ++ Sbjct: 492 SYDHLTHLPNRRLLNDRLKQAIAFSKRTQKN--LAILFIDLDGFKSINDSHGHQVGDWLL 549 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S ++ VGRLGG+EF L + A +AN + +E + I++ Sbjct: 550 TEVSKRIQYCLRATDTVGRLGGDEF-VVVLPEIYENAKEVANKILNSLEEPFV-ITNNGV 607 Query: 216 IHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 +HI+ S G+A T++ AD+A+Y AKK GRN+VV F Sbjct: 608 LHISSSIGVAIYPLDAKSQTMLMECADKAMYEAKKRGRNKVVFFD 652 >gi|39933963|ref|NP_946239.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009] gi|39647810|emb|CAE26330.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris CGA009] Length = 502 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 21/172 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ +L+ D L+GL N F +++ + N ++++ D D+FK ND+FGH Sbjct: 328 RRLEELATTDPLTGLTNRRKFDAAIDTEWRRAIRQNTPIALLMIDADHFKAYNDSFGHQA 387 Query: 151 GDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+++ ++ + V V R GGEEFA G + A +A +R+ +E + Sbjct: 388 GDQMLVGIAVCIADTVHRAGDCVARFGGEEFAVLLPGLTAPAAEAIAETIRRKVEEWS-D 446 Query: 210 ISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRVV 256 I G +T+S G+A PI+ ++ AD+ALY AK+ GRNR V Sbjct: 447 IEGG----VTVSIGVASTT---PIAAHQWYDLVEAADRALYAAKELGRNRCV 491 >gi|330826915|ref|YP_004390218.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans K601] gi|329312287|gb|AEB86702.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alicycliphilus denitrificans K601] Length = 921 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 10/167 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 Y+ ++QL L S + S + + L++VF D+DYFK++ND FGH +GD+++ Sbjct: 485 YDHLTQLPNRQMFQQDLQRS--MDSARASDLPLALVFLDLDYFKEVNDTFGHDMGDELLR 542 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQINISSGP 214 ++ +L + V RLGG+EF L E AI L + + ++ SG Sbjct: 543 QVARRLQSCVRSSDQVARLGGDEFTLILRDLKRLEDAPAICRKVLHAVAQPYEL---SGS 599 Query: 215 SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++H+++SAG+ R + + T++ AD A+Y AK+ GRN+ F+ Sbjct: 600 TVHVSVSAGVTFYPRDGDDGV-TLLKHADLAMYAAKEQGRNQFCEFA 645 >gi|325271650|ref|ZP_08138151.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] gi|324103222|gb|EGC00568.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] Length = 1098 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 16/174 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I L+ D L+ L N + I+ L +N + +++F D+D+FK IND+ GHPVG Sbjct: 656 QIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVG 715 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQ-EAAI--LANDLRKIIEN 205 D V+ ++ +L V RLGG+EF + GS E EA + LA+ LR+++ Sbjct: 716 DAVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSRELVEAQVRELADTLRELL-- 773 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ G + +T S G+A H + ++ RAD ALY AK SGRN F Sbjct: 774 AEPMSLDGQRLQVTPSIGVALIPDHGATPADLLKRADIALYRAKDSGRNTTQLF 827 >gi|315181530|gb|ADT88443.1| diguanylate cyclase [Vibrio furnissii NCTC 11218] Length = 468 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 15/249 (6%) Query: 19 LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL----VII 74 L S P + +++ F I ++F ++ L L + V+ L L ++ Sbjct: 221 LVSAYPSSQIVFMVFFLGIAQMWIVFTETATRSFVSLALLSTLTAVFVDVLGLSDRAMVY 280 Query: 75 SITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YN 126 TI LL G + + + ++ +LS D L+ + FI ++ Y+ Sbjct: 281 QFTIYLLAANTYFGLWVPHILVDNQKLRRLSEQDILTDVQTRQFFIRNVHDEVIRARRYS 340 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + +S+V FD+D FK INDN GH VGDKV+ +++ + +GR GG+EF G Sbjct: 341 QPVSMVLFDVDNFKAINDNHGHIVGDKVLIAIANLVKQEIRPSDKIGRFGGDEFMLLLPG 400 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 A +A LR+ I + I I +T S G+ E + + +AD+ L Sbjct: 401 DDLSGAIRVAERLRQAI--GHLYIDDFGDI-VTCSFGVTEMKSNDNFVSAFEQADKLLLA 457 Query: 247 AKKSGRNRV 255 AKK GR+RV Sbjct: 458 AKKEGRHRV 466 >gi|300790800|ref|YP_003771091.1| GGDEF domain-containing protein [Amycolatopsis mediterranei U32] gi|299800314|gb|ADJ50689.1| GGDEF domain-containing protein [Amycolatopsis mediterranei U32] Length = 224 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 25/177 (14%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDN 145 GS+ L SYNR R+ + F L++ D+D FK IND Sbjct: 53 DGSLRDPLTSSYNRRYLDERL--------YGPFTG-----RPPLALALIDLDRFKSINDT 99 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIE 204 +GH VGD+V+ ++D L F R GGEEF G + A + +D R ++ Sbjct: 100 YGHLVGDRVLRRVADLLQENLPPDGFCARYGGEEFVLWLPGVDARRAVRVVDDARVRVAR 159 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTI-----IYRADQALYVAKKSGRNRVV 256 + + P + +TISAG+A EP + + RAD LY AK++GRN+VV Sbjct: 160 HPWSELQ--PGLRVTISAGLAH----EPGTPASPERQLRRADVLLYAAKRAGRNKVV 210 >gi|319764707|ref|YP_004128644.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|317119268|gb|ADV01757.1| diguanylate cyclase [Alicycliphilus denitrificans BC] Length = 921 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 10/167 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 Y+ ++QL L S + S + + L++VF D+DYFK++ND FGH +GD+++ Sbjct: 485 YDHLTQLPNRQMFQQDLQRS--MDSARASDLPLALVFLDLDYFKEVNDTFGHDMGDELLR 542 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQINISSGP 214 ++ +L + V RLGG+EF L E AI L + + ++ SG Sbjct: 543 QVARRLQSCVRSSDQVARLGGDEFTLILRDLKRLEDAPAICRKVLHAVAQPYEL---SGS 599 Query: 215 SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++H+++SAG+ R + + T++ AD A+Y AK+ GRN+ F+ Sbjct: 600 TVHVSVSAGVTFYPRDGDDGV-TLLKHADLAMYAAKEQGRNQFCEFA 645 >gi|293605084|ref|ZP_06687476.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292816487|gb|EFF75576.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 375 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 87/182 (47%), Gaps = 20/182 (10%) Query: 90 LKELFISYNRI----SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138 L + I ++R+ Q + D L+GL++ A+ Y + L+++ D+D+ Sbjct: 184 LGTIMIIHDRMLADREQEANTDFLTGLMSRKAWWLQAERYCAQALRTRRPLTLLLLDVDH 243 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQE-AAI 194 FK+IND GH GD V+ T VGR+GGEEF G + E AA Sbjct: 244 FKRINDTHGHVAGDAVLRHFGLLATATLRTGDHVGRVGGEEFGVLFPDMRGDAVMEVAAR 303 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L + +R+ G +I T SAG+AE E + RAD+ LY AK +GRNR Sbjct: 304 LLDSVRR-----TPCAHGGSTISYTFSAGVAEWVPGENLQVFFERADRKLYAAKAAGRNR 358 Query: 255 VV 256 +V Sbjct: 359 IV 360 >gi|283832989|ref|ZP_06352730.1| putative GGDEF domain protein [Citrobacter youngae ATCC 29220] gi|291071602|gb|EFE09711.1| putative GGDEF domain protein [Citrobacter youngae ATCC 29220] Length = 410 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 77/165 (46%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+GLLN F ++ S + S++ D D FK IND FGH GD Sbjct: 249 LEQAALRDALTGLLNRRHFYQVTEPQQTNAMSLTQDYSLLLIDTDRFKSINDLFGHLKGD 308 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L+ L + R GGEEF +S A LA +R + +++ + Sbjct: 309 DVLCALARTLESCVRKDDLIFRWGGEEFVVLLPRTSLDAALNLAEVIRAAV--AKVTLPG 366 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 P T+S G+A E I + R D ALY AK GRNRV+ Sbjct: 367 LPR--FTVSIGVARHETNESIDELFKRVDDALYKAKNEGRNRVLA 409 >gi|218700465|ref|YP_002408094.1| putative diguanylate cyclase [Escherichia coli IAI39] gi|218370451|emb|CAR18258.1| putative diguanylate cyclase [Escherichia coli IAI39] Length = 485 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 315 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 374 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF + A LA +R+ +E N + I + Sbjct: 375 IGKSIRPDDLLARVGGEEFGVLLTEIDTECAKALAERIRENVERLTGDNPEYAIPQ--KV 432 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 433 TISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 471 >gi|218676491|ref|YP_002395310.1| hypothetical regulatory components of sensory transduction [Vibrio splendidus LGP32] gi|218324759|emb|CAV26424.1| hypothetical regulatory components of sensory transduction [Vibrio splendidus LGP32] Length = 323 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+ L N + L G N ++++ D+D+FK NDN+GH GD Sbjct: 147 LQQQANEDGLTKLYNRRYMDTKLEEIIAWHGRRNISMTVILLDVDFFKPYNDNYGHIQGD 206 Query: 153 KVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI 210 K + L++ L +F FVGR GGEEF + A + AN +++ + + ++ Sbjct: 207 KCLQGLANTLKELFVRAGEFVGRYGGEEFVIILSDTDSSGANLQANRVKEALHQMNYVHD 266 Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 S S +T S G+ + E I++I + DQALY AK+SGRN Sbjct: 267 YSAVSDRVTASQGVLSFIPEGGEAIASIYEKVDQALYQAKQSGRN 311 >gi|182417926|ref|ZP_02949236.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Clostridium butyricum 5521] gi|237669231|ref|ZP_04529213.1| diguanylate cyclase domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378235|gb|EDT75769.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Clostridium butyricum 5521] gi|237655118|gb|EEP52676.1| diguanylate cyclase domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 472 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 6/152 (3%) Query: 102 QLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 +++ D L+ L NH ++ ++ YN+ ++I+ FD++ FK IND +GH +GDK + Sbjct: 321 KMACADSLTKLNNHFSYKLTMKKLENKYNKNITIIVFDLNGFKLINDTYGHNIGDKALCV 380 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 S+ L+ VF FVGR+GG+EF +L + + I L K+I S+ N S + Sbjct: 381 FSEILLKVFKNKEFVGRIGGDEFIVISLEDNYENTEIKLKYLEKLI--SEYNKESEYRLG 438 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKK 249 + + K + I AD +Y KK Sbjct: 439 TSFGYCTRVKGDKSSLEKIQQEADICMYRNKK 470 >gi|158521388|ref|YP_001529258.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3] gi|158510214|gb|ABW67181.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3] Length = 368 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 29/247 (11%) Query: 33 IFFSIFIATVIFIANIFLFYIGL-----------TPFYGLEYILVENLSLVIISITISLL 81 + FSI IA++F F + L +P Y +V S++ + +T+S+ Sbjct: 125 VLFSILGDRRGMIASLFFFCLSLILMTLPETVLPSPPYSTH--IVARYSVIYVVLTLSVY 182 Query: 82 LGYISGSIL-KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133 S +L + + +R S+ D L+GL N + + E+ +++ Sbjct: 183 YYETSHQMLIRYIQREKDRFESASKRDPLTGLANRRDISERMENERERQARSGRPFALIL 242 Query: 134 FDIDYFKQINDNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 DID FKQ+ND GH GD V +A L V P R GGEEF + S + Sbjct: 243 GDIDNFKQLNDTHGHDCGDDVLKRVAGLMKNQVRGIDCP---SRWGGEEFLILLVESDRE 299 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249 A +A +R+ I+N+ + +T++ G++ + + I RADQALY K Sbjct: 300 GAYTVAGRIREKIQNTDFTFKK-EKMAVTMTFGLSVFNGGDDTVEKCIKRADQALYDGKH 358 Query: 250 SGRNRVV 256 G+NRVV Sbjct: 359 QGKNRVV 365 >gi|332163160|ref|YP_004299737.1| cell signaling regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667390|gb|ADZ44034.1| cell signaling regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 523 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 104 SRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 ++ D ++GL N ++L + S++ DID+FK+IND++GH VGD+VI L+ Sbjct: 370 AQTDPMTGLYNRRGLATTLEPIVQLGQHFSVIALDIDHFKEINDSYGHDVGDEVIKQLAI 429 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHIT 219 Q+ + R GGEEF + + +A LR +E + NI IT Sbjct: 430 QIRESSRDSDILCRSGGEEFLMLLPSTVPDVSTQVAKRLRHNVEMMVMANIRP-----IT 484 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS G+A + + RAD+ALY AK+ GRNRV Sbjct: 485 ISLGVAFWNGEGTPEDALKRADEALYRAKQQGRNRV 520 >gi|295690973|ref|YP_003594666.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC 21756] gi|295432876|gb|ADG12048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caulobacter segnis ATCC 21756] Length = 789 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 16/169 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-SYNEK-----------LSIVFFDIDYFKQINDNF 146 RIS+L+ D L+ L N +F+ +L ++ E +++ D+D+FK +ND+ Sbjct: 334 RISRLAHYDVLTQLPNRLSFLQALSRAWTEHGRGDREPRGAGCAVLCLDLDHFKGVNDSL 393 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN- 205 GHP+GD ++ S +L G V RLGG+EFA S EA L R I+++ Sbjct: 394 GHPIGDDLLVQASARLRDCVGEMGLVARLGGDEFAVVVAPSPGAEA--LGELARDIVDSL 451 Query: 206 SQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRN 253 S+ G + I S GIAE H + ++ AD ALY AK GR Sbjct: 452 SRPYDVRGNHVLIGASVGIAEAPLHADDPDGLLKNADLALYQAKGDGRG 500 >gi|242372980|ref|ZP_04818554.1| ABC superfamily ATP binding cassette transporter, binding protein [Staphylococcus epidermidis M23864:W1] gi|242349306|gb|EES40907.1| ABC superfamily ATP binding cassette transporter, binding protein [Staphylococcus epidermidis M23864:W1] Length = 356 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 14/205 (6%) Query: 63 YILVENLSLVIIS--ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 Y L+E L L+ IS ITIS + ++ + F NR + D L+GL N F Sbjct: 148 YDLIEILVLIPISLIITISSAITFVD---IWHFFSLVNRYENEDKYDYLTGLGNVKEFDR 204 Query: 121 SLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L N+ L+++ DID FK +ND + H GD V+ +S L + Sbjct: 205 HLNEVSSQAEEKNQSLALLLIDIDGFKDVNDTYSHQSGDAVLKQMSQLLKNYVPNQFKIF 264 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF+ + ++ LA ++R +E S ++ + I +++S G+ ++ Sbjct: 265 RNGGEEFSVVIRDYTLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTQEDRK 324 Query: 234 S--TIIYRADQALYVAKKSGRNRVV 256 S + AD ++VAK GRN+V+ Sbjct: 325 SQRKVFKDADDMVHVAKNEGRNKVM 349 >gi|153836913|ref|ZP_01989580.1| ggdef family protein [Vibrio parahaemolyticus AQ3810] gi|260365684|ref|ZP_05778198.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|260878185|ref|ZP_05890540.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|260896095|ref|ZP_05904591.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|149749871|gb|EDM60616.1| ggdef family protein [Vibrio parahaemolyticus AQ3810] gi|308088132|gb|EFO37827.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|308093473|gb|EFO43168.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|308111783|gb|EFO49323.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|328470693|gb|EGF41604.1| GGDEF family protein [Vibrio parahaemolyticus 10329] Length = 388 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 24/174 (13%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 QL+ D L+ + + A L K +I D+D+FK+ ND +GH +GD V+ ++ + Sbjct: 210 QLAFTDSLTQIPSRRALDLDLKHMGRKFTIAMLDVDHFKKFNDTYGHDIGDDVLKMVASR 269 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH- 217 L+ G V R GGEEF G + ++ + RK I ++ + +S P H Sbjct: 270 LMKTRGGAK-VYRFGGEEFTMVFKGKNVEDCRQYIEEARKAIAEYEMILRDKASRPDDHK 328 Query: 218 -----------------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 +T S G A+ R +EP + +I AD ALY AKK+GRN Sbjct: 329 QGQQNRGTEDMQRESVFVTASFGAADSRNGREP-AEVIKLADAALYKAKKAGRN 381 >gi|116250781|ref|YP_766619.1| GGDEF/EAL transmembrane sensory box protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255429|emb|CAK06505.1| putative GGDEF/EAL transmembrane sensory box protein [Rhizobium leguminosarum bv. viciae 3841] Length = 1046 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 83/179 (46%), Gaps = 16/179 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144 EL + NRI S D L+ L N +L S +K SI+ D+D FK IND Sbjct: 607 ELELVKNRIEHNSLHDPLTALANRRKLDIALESLTHDGRQQRQKFSILHIDLDRFKDIND 666 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN----DLR 200 GH GD ++ S L V R+GG+EF AL ++E A L+ ++R Sbjct: 667 TLGHAAGDAMLVHASKVLAKNVRGSDIVARIGGDEFVILALDVGDKEMAQLSTRIIEEMR 726 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + I+ + G SI I ++ GI K ++ AD ALY AK GRNR F+ Sbjct: 727 QPIDFQGFSCRCGVSIGIALANGIHVDARK-----VLINADIALYRAKSMGRNRFEFFN 780 >gi|24373122|ref|NP_717165.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1] gi|24347318|gb|AAN54609.1|AE015601_3 GGDEF domain protein [Shewanella oneidensis MR-1] Length = 518 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + + L I DID+FK IND+FGH GDK Sbjct: 354 QKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWIAVADIDHFKIINDSFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF + + A L N +R+ ++N + Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLILPDIDDSDIAQLLNRVREKVKNIPFKFKN- 472 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A E I RAD ALY AK R+RVV Sbjct: 473 QRITVTVSIGAARVMGNELIHETFERADAALYKAKHESRDRVV 515 >gi|73749065|ref|YP_308304.1| GGDEF domain-containing protein [Dehalococcoides sp. CBDB1] gi|73660781|emb|CAI83388.1| GGDEF domain [Dehalococcoides sp. CBDB1] Length = 792 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 18/181 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y + + + D L+ L NH F I+ + S++ D+D FK ND +GH Sbjct: 410 YTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHL 469 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+++ L L + R GGEEFA G+ ++A +A +RK IE+ Sbjct: 470 AGDQLLRRLGKILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNIESK--- 526 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 SS + IT S G+A + KE II +AD ALY +K++GRNR +D+ NN+ Sbjct: 527 -SSFRDMPITASLGLANWPTDGVMKE---EIIAKADAALYRSKETGRNRTSLPADLNNNS 582 Query: 266 C 266 Sbjct: 583 T 583 >gi|307824542|ref|ZP_07654767.1| diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307734526|gb|EFO05378.1| diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 335 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 12/135 (8%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 I DID+FK++ND+FGH GD+V+ S + F F+ R GGEEF +S++ Sbjct: 194 IAILDIDHFKRVNDDFGHLYGDEVLLIFSQLMEKCFRYNDFLFRFGGEEFVVILNLASQE 253 Query: 191 EAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPIS---TIIYRADQALYV 246 A + N R+ + N P++ +T+S G+ H + IS T + AD+ALY Sbjct: 254 TAVNVFNRFREAVANYNF-----PTVGRVTVSIGL---THVDGISMPTTQLDHADKALYH 305 Query: 247 AKKSGRNRVVCFSDI 261 AK +GRNR++ + D+ Sbjct: 306 AKDTGRNRIILYEDM 320 >gi|262273086|ref|ZP_06050903.1| GGDEF family protein [Grimontia hollisae CIP 101886] gi|262222842|gb|EEY74150.1| GGDEF family protein [Grimontia hollisae CIP 101886] Length = 341 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+G+ N A + L + + S++ D+D+FK+ ND +GH +GD+V+ + + Sbjct: 182 DALTGIYNRRALDAELEALVATPPPKGFSLLLCDLDHFKRFNDTYGHLMGDQVLKLTAKR 241 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI-HIT 219 L + R GGEEFA A +A +R I+ + + +G + +I+ Sbjct: 242 LSDYCRDGIKAYRYGGEEFALLVPNRPLSGACRVAETIRATIDKLALKDKRTGKKLDNIS 301 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IS G+A H E I +I RAD LY AKK GRNRV+ Sbjct: 302 ISIGVAAFEHGESIRDLISRADTQLYDAKKLGRNRVM 338 >gi|118588681|ref|ZP_01546089.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM 12614] gi|118438667|gb|EAV45300.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM 12614] Length = 489 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 9/162 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+GL N + F SL N K +++ D+D FK +ND GHPVGD Sbjct: 316 VRRLAMTDHLTGLSNRAHFSQSLAESIAIADRENRKFALMMLDLDTFKPVNDRHGHPVGD 375 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ ++ + V R+GG+EF A + QE +LA R E S+ Sbjct: 376 ALLQVVASTIKRCTRDGDVVTRIGGDEF-AVIISDYAQEKDVLACAERIYREVSRPMDIK 434 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 G I+I IS G++ + ++I ADQA+Y AKKSG N Sbjct: 435 GNQINIGISIGVSFYPDDADDAKSLITHADQAMYEAKKSGVN 476 >gi|90022108|ref|YP_527935.1| response regulator receiver modulated diguanylate cyclase [Saccharophagus degradans 2-40] gi|89951708|gb|ABD81723.1| response regulator receiver modulated diguanylate cyclase [Saccharophagus degradans 2-40] Length = 301 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 10/175 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + + +L+ D L+G+ N +F ++ + ++++ D D+FK IN Sbjct: 126 RDLEKANKELERLATRDPLTGINNRRSFFKLAEAELTKTIRHGRDIALLMLDADHFKMIN 185 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD+ + +++ + RLGGEEFA ++ + A +A +R+ Sbjct: 186 DTYGHAAGDEALLTITEICQNACRESDILARLGGEEFAICCPDTNLEGAYAVAERIRQQC 245 Query: 204 ENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 EN+ I +S S IT+S GI + I+ ++ RAD LY AK+ GRNR + Sbjct: 246 ENTVIEHNSA-SFGITLSIGITTFVPSQDKSITEMLQRADNLLYQAKEMGRNRSI 299 >gi|311696313|gb|ADP99186.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [marine bacterium HP15] Length = 759 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 17/184 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 S LKE ++ ++ D L+G+ N F L + KL++V+ D+D FK Sbjct: 579 SRLKE---QERKLRIMAHYDALTGMPNRVLFADRLQQAMALTRRQSGKLAVVYIDLDEFK 635 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILAND 198 +ND FGH GD+++ ++ ++ + R+GG+EFAA + + A ++L Sbjct: 636 PVNDAFGHEAGDQLLVEIAHRMRSELREEDTLARIGGDEFAAIVMNVQDDPALESLLMRL 695 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256 L ++ E + + S+ ++ S G E + ++ +ADQA+Y AK GRNR V Sbjct: 696 LARVAEPVWV---ADHSVEVSASIGYTLFPQAEDLDGDQLLRQADQAMYQAKHRGRNRYV 752 Query: 257 CFSD 260 FSD Sbjct: 753 RFSD 756 >gi|258621531|ref|ZP_05716564.1| GGDEF family protein [Vibrio mimicus VM573] gi|258586149|gb|EEW10865.1| GGDEF family protein [Vibrio mimicus VM573] Length = 408 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 20/172 (11%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 I ++R+ + D L+G N F L + + DID+FKQIND++GH + Sbjct: 239 IEWHRLRSIR--DELTGAFNRRYFKEQVQRQLNQSDTPYVVALVDIDHFKQINDSYGHDM 296 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK------IIE 204 GD VI F+ +L + T V R GGEEFA A + + + ND+ IE Sbjct: 297 GDAVITFVVRKLESLNLTDCLVARYGGEEFAVFAREADAERVKEVLNDVCDAISQGFCIE 356 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 N Q+ +S ++I A + + + +AD A+Y AK+ GRNRV+ Sbjct: 357 NQQLKVS------VSIGAVLFDTPFD--YGEALRKADSAMYQAKEQGRNRVM 400 >gi|330972663|gb|EGH72729.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 664 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 206 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 262 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 263 LFMDLDGFKQINDTLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 322 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 323 QAAKIAEKLIERVSGRRQVD---GVEITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 378 Query: 248 KKSGRNR 254 K++GR + Sbjct: 379 KRAGRQQ 385 >gi|297537744|ref|YP_003673513.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297257091|gb|ADI28936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylotenera sp. 301] Length = 985 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 21/179 (11%) Query: 96 SYNRISQLSRIDCLSGL---------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNF 146 S NR+ +L D L+GL L HS I N K++++F D+D FK +ND Sbjct: 553 SQNRLHELVNHDPLTGLPNRRLLNELLEHS--IKRAERDNHKIALLFIDLDRFKAVNDTL 610 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-LGSSEQEAAILANDLRKIIEN 205 GH VGDK++ S ++ + V RLGG+EF + S +A+++A +KII Sbjct: 611 GHQVGDKLLLEASRRISLSMRDSDVVARLGGDEFVVMMDMISKPSDASLVA---KKIIHA 667 Query: 206 SQINIS-SGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 QI + G I+I+ S GI+ + C + +I AD A+Y K G+N +SD Sbjct: 668 LQIEFNIDGHEIYISASVGISTFPKDC--ADVEGLIKAADIAMYQVKNKGKNNHCFYSD 724 >gi|260777847|ref|ZP_05886740.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605860|gb|EEX32145.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 303 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 20/195 (10%) Query: 73 IISITISLLLGYISGSI-LKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGS 124 IIS + ++G I S + ++ ++++L+ D L+ L N S + + Sbjct: 112 IISSVTNEVIGLIGVSTDITDIVEMREKLAELANTDDLTKLYNRRKLWRQFSEEFAHAQT 171 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 ++ LS + DID+FK IND FGH GD+VI L+D + GR+GGEEF Sbjct: 172 HDLSLSCIVIDIDHFKHINDTFGHDHGDEVIVQLADIARSHIRSTDSCGRIGGEEFLIVL 231 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGP----SIHITISAGIAERCHKEPISTIIY-R 239 ++ ++A +A LR + S P + + +IS G+ E K+ +Y R Sbjct: 232 HQTNAEQALQIAERLR-------CDFYSFPFFTDNNNFSISCGVTELTEKDKDFFDLYRR 284 Query: 240 ADQALYVAKKSGRNR 254 AD+ALYV+K GRNR Sbjct: 285 ADKALYVSKNKGRNR 299 >gi|77361999|ref|YP_341573.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis TAC125] gi|76876910|emb|CAI89127.1| putative protein with GGDEF domain [Pseudoalteromonas haloplanktis TAC125] Length = 174 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 11/165 (6%) Query: 99 RISQL---SRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +I QL ++ D L+G+ N + ++ L +I+ DID+FK++ND +GH GD Sbjct: 11 QIGQLRHDAQTDPLTGIHNRRSLKVWLDKLIHEQTLFTILEIDIDFFKRVNDTYGHDKGD 70 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + L+ + + V R+GGEEF + + A +A LR +E+S I+ Sbjct: 71 ETLKALTVLIQSIARKDDIVARIGGEEFVLVIPNQNSEGAFKIAERLRLAVESSYIDTIG 130 Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 +ITIS GIA H I + +AD ALY AK+ GRNR V Sbjct: 131 ----YITISIGIASYPEHGTNIDQVFKKADNALYYAKEHGRNRSV 171 >gi|297537336|ref|YP_003673105.1| diguanylate cyclase [Methylotenera sp. 301] gi|297256683|gb|ADI28528.1| diguanylate cyclase [Methylotenera sp. 301] Length = 337 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 22/168 (13%) Query: 107 DCLSGLLNHSAFISSLGS-----------YNEKLSIVFF----DIDYFKQINDNFGHPVG 151 D L+GLLN F + ++K V+F DID+FK++ND FGH +G Sbjct: 154 DTLTGLLNRKTFDFRINKILVQMQEAAKLQSDKADQVYFLAIFDIDHFKRVNDEFGHLIG 213 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ S + F + + R GGEEF SS + + N R+ + Q N Sbjct: 214 DEVLLLFSQLMTQTFRSNDPIFRFGGEEFVGVFECSSHDDIPNILNRFREKV--GQFNF- 270 Query: 212 SGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 P + +T+SAG E S +I AD ALY AK +GRNR +CF Sbjct: 271 --PQVGKVTVSAGYTEIFTYGLPSQLIDHADLALYFAKNNGRNR-ICF 315 >gi|262190925|ref|ZP_06049140.1| GGDEF family protein [Vibrio cholerae CT 5369-93] gi|262033192|gb|EEY51715.1| GGDEF family protein [Vibrio cholerae CT 5369-93] Length = 312 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS + S+ID L+ L N F S + L ++ FDID+FKQIND +GHP GD Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L R GGEEF LA ++R +E+ + + Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRGYVESHTL-MWQ 264 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+SAG A H +++ ADQAL AK+ GRNRV+ Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309 >gi|261211261|ref|ZP_05925550.1| GGDEF family protein [Vibrio sp. RC341] gi|260839762|gb|EEX66373.1| GGDEF family protein [Vibrio sp. RC341] Length = 312 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 12/160 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 S+ID L+ L N F + +L ++ FDID+FKQIND +GHP GD V+ ++ Sbjct: 155 SQIDPLTQLKNRRGFYTWCEPLVPETRLGMIIFDIDHFKQINDTYGHPAGDYVLRQIAGL 214 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L + R GGEEF LA +R+ +E++ + + G I +T+S Sbjct: 215 LEQNLPSLSCCVRWGGEEFLVCFECDEMANVIGLAETIRRYVESNTL-MWQGQQIALTLS 273 Query: 222 AGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRVV 256 AG C +++ ++ ADQAL AK+ GRNRV+ Sbjct: 274 AG----CTVGAMTSNNWDNLLQTADQALLSAKRLGRNRVI 309 >gi|153825555|ref|ZP_01978222.1| GGDEF family protein [Vibrio cholerae MZO-2] gi|149740840|gb|EDM54931.1| GGDEF family protein [Vibrio cholerae MZO-2] Length = 312 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS + S+ID L+ L N F S + L ++ FDID+FKQIND +GHP GD Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L R GGEEF LA ++R +E+ + + Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRGYVESHTL-MWQ 264 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+SAG A H +++ ADQAL AK+ GRNRV+ Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309 >gi|124267406|ref|YP_001021410.1| diguanylate cyclase [Methylibium petroleiphilum PM1] gi|124260181|gb|ABM95175.1| diguanylate cyclase [Methylibium petroleiphilum PM1] Length = 413 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 101/202 (50%), Gaps = 19/202 (9%) Query: 70 SLVIISITISLLLGYI----------SGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118 SLV+ + + LLL + +++L + ++ L+ ID L+ + N F Sbjct: 194 SLVVTGVVLPLLLSMLFTVYLCLVLTHERTVRDLRETQRQLRVLADIDMLTQVPNRRHFE 253 Query: 119 ---ISSLGSYNEKLSI-VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 + +G+ S+ + FDID+FK +NDN GH VGD + ++ T +GR Sbjct: 254 ELATAIVGNGAAPPSVLMLFDIDHFKHVNDNHGHAVGDAALRLVARCTRDTLRTRDVMGR 313 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 +GG+EF G+S +A +A+ +I N + + P + +++S G+ + E ++ Sbjct: 314 VGGDEFMLLLPGASVDDALHVAD---RITRNLDLASKNFP-LPLSLSFGLVQIHTGESLA 369 Query: 235 TIIYRADQALYVAKKSGRNRVV 256 +RAD ALY AK+ GR R V Sbjct: 370 AAQHRADLALYEAKRQGRRRAV 391 >gi|66043776|ref|YP_233617.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63254483|gb|AAY35579.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 719 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 261 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 317 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 318 LFMDLDGFKQINDTLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 377 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 378 QAAKIAEKLIERVSGRRQVD---GVEITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 433 Query: 248 KKSGRNR 254 K++GR + Sbjct: 434 KRAGRQQ 440 >gi|309777328|ref|ZP_07672289.1| protein AdrA [Erysipelotrichaceae bacterium 3_1_53] gi|308914869|gb|EFP60648.1| protein AdrA [Erysipelotrichaceae bacterium 3_1_53] Length = 253 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 96/180 (53%), Gaps = 16/180 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQIND 144 K++ R+ S +D +G+ + AF +K+ +++ DID+FK++ND Sbjct: 73 KKIMAQNERLRYTSELDGFTGIYHKKAFQEHADELIKKVNQHNWGALLILDIDHFKEVND 132 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+ I + D + V T GR+GG+EF+ G + QEA + +KI++ Sbjct: 133 TYGHLAGDEAILRIVDIMKKVLQTGDICGRIGGDEFSIFLCGLA-QEAQV-----QKIMQ 186 Query: 205 N--SQINISSGPSIHITISAGIAERCHKEPIS-TIIYR-ADQALYVAKKSGRNRVVCFSD 260 + Q++ P + +T++ I ++P S T IY+ +DQALY AK+ GRN+ + + Sbjct: 187 SILKQVHEIRLPGLDMTLTMSIGCCLIQKPCSFTHIYQHSDQALYKAKEKGRNQAYLYKE 246 >gi|254505185|ref|ZP_05117336.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222441256|gb|EEE47935.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 298 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 18/164 (10%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++ L++ D L+GLLN + +S + LS++ DID+FK IND +GH GD Sbjct: 134 LANLAKRDALTGLLNRRELSEQFAMLLSQANRADRALSVLLIDIDHFKTINDEYGHQRGD 193 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ L T R GGEEF + +AA A+ + + + ++ Sbjct: 194 TVLREFGGLLQKSCRTGDVAARYGGEEFVVLLPDTGITDAAKRADRIHEKLSGIEVG--- 250 Query: 213 GPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGR 252 + ++S GI+E+ K P++T +I +AD+ALY+AK +GR Sbjct: 251 --GLRFSVSIGISEK--KAPVATDAENMIKKADEALYLAKNAGR 290 >gi|270263851|ref|ZP_06192119.1| diguanylate cyclase [Serratia odorifera 4Rx13] gi|270042044|gb|EFA15140.1| diguanylate cyclase [Serratia odorifera 4Rx13] Length = 358 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 7/183 (3%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQ 141 + +++ L+ +R S LS ID L+GL N + + E S ++ DID+FK Sbjct: 172 TQTLVANLYNERDRFSNLSMIDPLTGLYNRRGLENKINMLPESQSGRHFVLLLDIDHFKA 231 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 NDN+GH +GD+ + ++ + + V R GGEEF E AA LA +R+ Sbjct: 232 YNDNYGHTMGDQALVQVAIAIRDSVRSRDIVVRYGGEEFLVLLTNVREDYAAQLAERVRR 291 Query: 202 IIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ +I + ++T+SAGIA K +++ I AD ALY+AK +GRN + Sbjct: 292 RVQELKIPHRFNQLEMTNVTLSAGIA-MLDKLDVASAIRAADAALYLAKNNGRNNIQLAE 350 Query: 260 DIE 262 +++ Sbjct: 351 NVQ 353 >gi|124516482|gb|EAY57990.1| Diguanylate cyclase [Leptospirillum rubarum] Length = 368 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 83/161 (51%), Gaps = 11/161 (6%) Query: 106 IDCLSGLLNHSAFISSLGS-YNEKLSIVFFDIDYFKQINDNFGHPVGD---KVIAFLSDQ 161 +D L+G LN F +GS + ++ FD+D+FKQ+ND GH GD K IA L + Sbjct: 203 LDPLTGTLNRRGFQKRIGSSVGMDIVLLIFDLDHFKQLNDRQGHHQGDLVLKRIAGLVNG 262 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS--GPSIH-I 218 L+ G+ R GG+EF + +E +A ++R IE + SS PS + Sbjct: 263 LLD--GSNAVFSRWGGDEFLVMFPRKNLEEIVAIAEEIRTQIEKEALGASSETEPSGQGM 320 Query: 219 TISAGI-AERCHKEPISTIIYR-ADQALYVAKKSGRNRVVC 257 TIS G+ A R E Y ADQALY+AKK GRNR Sbjct: 321 TISVGLSAGRLDSEEQFDRFYNLADQALYLAKKEGRNRTRA 361 >gi|330900807|gb|EGH32226.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 664 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 206 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 262 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND+ GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 263 LFMDLDGFKQINDSLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 322 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 323 QAAKIAEKLIERVSGRRQVD---GVEITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 378 Query: 248 KKSGRNR 254 K++GR + Sbjct: 379 KRAGRQQ 385 >gi|325924044|ref|ZP_08185623.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] gi|325545479|gb|EGD16754.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] Length = 348 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 16/179 (8%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF----------ISSLGSYNEKLSIVFFDIDYFKQIN 143 F +Y + ++ D L+GL N F ++ S E + + DID+FK++N Sbjct: 156 FQNYRSLLDDAQRDALTGLRNRKTFDDVILRLFAGAAADASAGESVWLGIVDIDHFKRVN 215 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+FGH GD+V+ ++ + F + R GGEEF G A L R + Sbjct: 216 DSFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRLAV 275 Query: 204 ENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 P + +T+S GI E H IS ++ AD+ALY AK+ GRNR ++++ Sbjct: 276 AEYAF-----PQVGKVTLSTGIVELTHGRLISQMMDEADKALYWAKQHGRNRAEVYAEL 329 >gi|324324668|gb|ADY19928.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 568 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ + +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKREFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 252 -FILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|309779360|ref|ZP_07674122.1| hypothetical protein HMPREF1004_00711 [Ralstonia sp. 5_7_47FAA] gi|308921918|gb|EFP67553.1| hypothetical protein HMPREF1004_00711 [Ralstonia sp. 5_7_47FAA] Length = 390 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G L+ F + + + L+++ D+D+FK+IND GH GD V+ Sbjct: 224 DFLTGALSRQGFEALARRHVGRVLRHARPLALLILDLDHFKRINDTLGHAAGDAVLRAFV 283 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +GR+GGEEFA + A LA+ LRK + + ++ S + Sbjct: 284 QMAQAQLRPTDVLGRIGGEEFALLLPDTDSGNAMHLADRLRK-AAAAHVVMAGAQSCRYS 342 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G+A E + RAD+ALY AK GR+R+ Sbjct: 343 LSGGVAVWQPGESFDRLSARADRALYDAKHQGRDRI 378 >gi|153803424|ref|ZP_01958010.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|124121037|gb|EAY39780.1| GGDEF family protein [Vibrio cholerae MZO-3] Length = 312 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS + S+ID L+ L N F S + L ++ FDID+FKQIND +GHP GD Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L R GGEEF LA ++R +E+ + + Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRGYVESHTL-MWQ 264 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+SAG A H +++ ADQAL AK+ GRNRV+ Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309 >gi|325288309|ref|YP_004264490.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271] gi|324963710|gb|ADY54489.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271] Length = 369 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 25/211 (11%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRI--------------SQLSRIDCLSGLLNHS 116 +VI+ I + LLGYI G + E+ R+ +++ D L+ L NH Sbjct: 148 VVIVQILLFFLLGYIMGVVNHEINRLVGRLCYMNEDLEHKNSLLNEMVSKDYLTSLYNHK 207 Query: 117 AF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F I+ LS+ DID FK+IND +GH GD+V+ +S + Sbjct: 208 TFYIYYKEIITRSYESQNSLSLALLDIDNFKKINDTYGHLAGDQVLQKISALIQANVRKN 267 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 R GGEEFA + + + +R +I + + I +TIS G+A Sbjct: 268 DVAARYGGEEFAIIFPDTLPEIGNAVCERIRNLIAGHEF-VFDNQIIQVTISGGVAGGIC 326 Query: 230 KEPI---STIIYRADQALYVAKKSGRNRVVC 257 EP + + DQ LY AK G+NR++C Sbjct: 327 MEPRYKNNELFTCVDQLLYQAKGQGKNRILC 357 >gi|255654991|ref|ZP_05400400.1| putative signaling protein [Clostridium difficile QCD-23m63] Length = 514 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 16/176 (9%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 Y + + D L+ + N F + + G + L I+ D+D FK+INDNFG Sbjct: 339 KYEELKTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKKDALFII--DLDDFKEINDNFG 396 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206 HP GD V+ +D++ FG+ VGR+GG+EF +E A +L +++ ++ Sbjct: 397 HPFGDFVLKTFADKIQASFGSRDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDN 456 Query: 207 QINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 ++S S ++S GIA R ++ S + AD+ALY K SG+N F + Sbjct: 457 YTDLSF--SFDASVSIGIA-RYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEE 509 >gi|152993068|ref|YP_001358789.1| hypothetical protein SUN_1481 [Sulfurovum sp. NBC37-1] gi|151424929|dbj|BAF72432.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 813 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 11/178 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143 +EL + + + D L+GL N + F L + KL++ F D+D FKQIN Sbjct: 374 QELLKQKDILHHQAHHDALTGLPNRTLFSDRLEHGLKLAERHLGKLALFFIDLDNFKQIN 433 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKI 202 D+ GH +GDKV+ +S +L + RLGG+EF + Q+ ++LA ++K+ Sbjct: 434 DSLGHQIGDKVLVVVSKRLKAKIRQEDTLARLGGDEFTIIMENFKDVQQVSVLAQKIQKV 493 Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + N ++I G +++I+ S GI+ + + ++ AD A+Y AK+ GRN +S Sbjct: 494 L-NQPMHI-EGHTLYISCSIGISFYPQDTQNANDLVKYADAAMYKAKEEGRNNFQFYS 549 >gi|120613358|ref|YP_973036.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gi|120591822|gb|ABM35262.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 572 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 11/167 (6%) Query: 100 ISQL---SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 I+QL S D L+GL N AF I+ ++++ D+D FK ND GH Sbjct: 402 IAQLREQSLTDFLTGLPNRRAFFAAARERIAQARQQRFDVALMLLDVDLFKSFNDRAGHA 461 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+ + ++ + V R GGEEF + +E A A LR IE + + Sbjct: 462 AGDEALRAVARAVRHTLRPGDLVARYGGEEFVVLLGPCAGREGAACAERLRHAIETAPVV 521 Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + SG +T S G+A + H + ++ AD ALY AK GRNRV Sbjct: 522 LPSGERFRLTASVGVAVSQRHGMVLDHLLSEADTALYRAKDRGRNRV 568 >gi|78486259|ref|YP_392184.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78364545|gb|ABB42510.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Thiomicrospira crunogena XCL-2] Length = 893 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 86/173 (49%), Gaps = 20/173 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R LS D L+GL N F I+ L+I DID+FK+IND +GH G Sbjct: 723 RNEHLSITDDLTGLYNRRYFNQVIEREINRAKREQRSLAIAMMDIDFFKKINDTYGHQEG 782 Query: 152 DKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 D+V+ Q+ VF + FV R+GGEEF +L SE E L +++ Sbjct: 783 DQVL----KQVATVFESSFHRATDFVFRMGGEEFLVISLFKSEAEFQTYLEQLCLKVKSL 838 Query: 207 QINISSGPSIHITISAGIAERCHKEPI--STIIYR-ADQALYVAKKSGRNRVV 256 I ++ +TIS G A C + + S +Y+ DQ LY AK++GRN+VV Sbjct: 839 GIENAASSEGVLTISVG-AIYCESDALTNSEKLYKVVDQRLYQAKQTGRNKVV 890 >gi|77748542|ref|NP_640967.2| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306] Length = 317 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 19/180 (10%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-----------ISSLGSYNEKLSIVFFDIDYFKQI 142 F +Y + ++ + L+GL N F S L IV DID+FK++ Sbjct: 126 FQNYRSLLDDAQRNALTGLRNRKTFDDVILRLFAGGADSAAEQGVWLGIV--DIDHFKRV 183 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH GD+V+ ++ + F + R GGEEF G A L R Sbjct: 184 NDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRLA 243 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + P + +T+S GI E H IS ++ AD+ALY AK++GRNR ++++ Sbjct: 244 VAEHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAEL 298 >gi|88860801|ref|ZP_01135438.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Pseudoalteromonas tunicata D2] gi|88817396|gb|EAR27214.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Pseudoalteromonas tunicata D2] Length = 357 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 22/243 (9%) Query: 33 IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN--------LSLVIISITISLLLGY 84 ++F +F +AN+ +F L Y ++IL E ++ +++I +S + Y Sbjct: 115 VYFILFDYRKGLVANLLIFSAILFLLYQPDWILAEYQPAEKSRFIASYLVTIFLSFVAEY 174 Query: 85 ISGSILKELF-ISYNRISQLSRIDCLSGLLNHSAFISS---LGSYNEK-----LSIVFFD 135 +EL I+Y R Q + D L+ L N F+ S +G+ E + +V D Sbjct: 175 FRFHSHQELSSINYQRQKQ-ANTDPLTQLPNRR-FLDSVFFIGADREPKHYFPMVVVMAD 232 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK++ND +GH GD V+ ++ L V R+GGEEF + + + Sbjct: 233 IDFFKRVNDTYGHDTGDHVLKHVASLLKSSLRGFDVVARIGGEEFLILLPQTMLVDGISV 292 Query: 196 ANDLRKIIENSQINISSGPS---IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +R +N+ N I +T+S G+AE E ++ I AD LY+AK+ GR Sbjct: 293 AEKIRIECQNTPFNQFDNLQQVYIDLTVSFGVAEASSAEQLNNAIMAADSKLYLAKEQGR 352 Query: 253 NRV 255 N+V Sbjct: 353 NQV 355 >gi|126176222|ref|YP_001052371.1| diguanylate cyclase [Shewanella baltica OS155] gi|125999427|gb|ABN63502.1| diguanylate cyclase [Shewanella baltica OS155] Length = 610 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 10/177 (5%) Query: 89 ILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIND 144 +L++ +S N ++ +++ D L+GL N F L + + + D+DYFK ND Sbjct: 424 VLQQALVSANTQLKEMAETDELTGLANRRPFTERLETVLQADTPAGLFMLDVDYFKSYND 483 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 + H GD V+ ++D L P + R+GGEEFA + + +A L + Sbjct: 484 TYVHLEGDVVLKRVADALAQCDILPHNALLARIGGEEFALVVEHVTPAQLTAIATQLCYL 543 Query: 203 IENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E I + P +TIS G ++ ++ ++ RAD LY AK GRNRV Sbjct: 544 VEQLNIPHQASPLAVLTISIGCVFLPLDKVSGLKMADVLRRADVCLYRAKDKGRNRV 600 >gi|311696963|gb|ADP99836.1| diguanylate cyclase with PAS/PAC sensor [marine bacterium HP15] Length = 753 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 10/170 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFI------SSLGSYNE-KLSIVFFDIDYFKQINDNFGHPV 150 + + S D L+GL N F S++ N+ LS++ DID+FK+ ND GH Sbjct: 584 EELQKFSYEDGLTGLKNRRYFDQLFEHESAVAQRNDLPLSLLIIDIDHFKKFNDTHGHEA 643 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + ++ L F V R GGEEF G++ + A A+ L + + I Sbjct: 644 GDNALKIVAGILQKQFRESDLVCRYGGEEFVVVMPGATSEAAMDKASQLSSAVRDVAIIH 703 Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +T+S G+A ++P+ I+ AD+ALY AK++GRNRV F Sbjct: 704 REKDLGALTVSVGVASWPESGEKPLQ-ILTLADRALYRAKEAGRNRVEVF 752 >gi|308126495|ref|ZP_05910508.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|308109956|gb|EFO47496.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] Length = 409 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 24/174 (13%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 QL+ D L+ + + A L K +I D+D+FK+ ND +GH +GD V+ ++ + Sbjct: 231 QLAFTDSLTQIPSRRALDLDLKHMGRKFTIAMLDVDHFKKFNDTYGHDIGDDVLKMVASR 290 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH- 217 L+ G V R GGEEF G + ++ + RK I ++ + +S P H Sbjct: 291 LMKTRGGAK-VYRFGGEEFTMVFKGKNVEDCRQYIEEARKAIAEYEMILRDKASRPDDHK 349 Query: 218 -----------------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 +T S G A+ R +EP + +I AD ALY AKK+GRN Sbjct: 350 QGQQNRGTEDMQRESVFVTASFGAADSRNGREP-AEVIKLADAALYKAKKAGRN 402 >gi|299529288|ref|ZP_07042728.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298722732|gb|EFI63649.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 522 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 12/180 (6%) Query: 90 LKELFISYN-RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 ++E + N + +L D L+GL N F + LS++ D+D+FK Sbjct: 343 VREKLLDANLELERLVTQDSLTGLANRRRFDEVLQLEVRRAARDGTVLSLLLIDLDHFKG 402 Query: 142 INDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND +GH GD+ + +S QL + + R GGEE A ++ + A +A +L Sbjct: 403 FNDRYGHVAGDECLKAVSRQLELSAKRSGDLAARYGGEELAIILPNTALEGAMRVAEELL 462 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257 K I I S H+T+S G A + +++ ++ ADQALY AK +GRNR C Sbjct: 463 KCIRGLDIAHESSQFGHVTVSIGAASMQGRHGLASPLDLVEAADQALYRAKAAGRNRAEC 522 >gi|253689352|ref|YP_003018542.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755930|gb|ACT14006.1| diguanylate cyclase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 310 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 7/158 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAF 157 RI S D L+ L N FI+ L K +F DID FK IND +GH GD+V++ Sbjct: 145 RIQSFS--DELTQLPNRRFFINELKKLEAKTPYLFIIDIDNFKVINDKYGHTKGDEVLSK 202 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L + + R+GGEEFA ++ A LA R++++N+ I H Sbjct: 203 FGHILSRFDNSEVVATRIGGEEFAIILYAGTQDRAEKLA---REVLKNANKIIIKNMH-H 258 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++S G ++ +EP + R D ALY AK +G+ +V Sbjct: 259 LSVSIGAGKKQPQEPTEHFMKRVDIALYQAKNTGKGKV 296 >gi|241765248|ref|ZP_04763230.1| diguanylate cyclase [Acidovorax delafieldii 2AN] gi|241365080|gb|EER59965.1| diguanylate cyclase [Acidovorax delafieldii 2AN] Length = 254 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 9/163 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+GL N F I + E ++ DID+FKQIND GH GD Sbjct: 49 LCELSLKDPLTGLANRRHFRAVLEREIDRVTRSGEAALLLMLDIDHFKQINDTHGHLAGD 108 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L + R GGEEFA ++A +R+ + N+ + IS Sbjct: 109 VVLQSVARTLNACIRPMDTLARYGGEEFAVVLPACQAGFGKVVAERIRRAVANTPVRISP 168 Query: 213 GPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRN 253 + +TIS G A +T+++ RAD LY AK GRN Sbjct: 169 SVEVQVTISIGGAFAMQWIRSTTLLWTDRADHQLYTAKSLGRN 211 >gi|229591725|ref|YP_002873844.1| putative GGDEF/GAF domain sensory box protein [Pseudomonas fluorescens SBW25] gi|229363591|emb|CAY50893.1| putative GGDEF/GAF domain sensory box protein [Pseudomonas fluorescens SBW25] Length = 315 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 1/128 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS++ DID+FK+IND GH GD V+ ++ + V R GGEEF + Sbjct: 186 LSLLMIDIDHFKRINDTHGHAAGDNVLRAVAAAIKGQLRNVDMVFRFGGEEFLILLSNTG 245 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 AA++ LR+ + +Q + I +T+S G + E +++ RAD ALYVAK Sbjct: 246 RDAAAMVGERLRQAAQ-AQDYWADDTRIELTVSLGCSTLLAAESAESLLRRADTALYVAK 304 Query: 249 KSGRNRVV 256 + GRNR+ Sbjct: 305 REGRNRLA 312 >gi|209886005|ref|YP_002289862.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans OM5] gi|209874201|gb|ACI93997.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans OM5] Length = 907 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 15/163 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 RI+ ++R D L+ L N + F + ++ +E L+++ D+D FKQ+ND GH VGD+++ Sbjct: 477 RIAHMARYDALTDLPNRTMFRDHLETMLRQSEPLAVLSIDVDEFKQVNDTLGHFVGDELL 536 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS---- 211 ++ ++ V RLGG+EFA G E+ DL +IE I Sbjct: 537 VAIAGRVSDCMEPGDLVARLGGDEFAIVRHGVRERA------DLIPLIERVHAAIRLPYS 590 Query: 212 -SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252 G +++ S G+A C + ++ AD ALY AK SGR Sbjct: 591 CVGHRLNVDASIGVAVSPCDGSELEGLLRNADLALYAAKGSGR 633 >gi|117620579|ref|YP_854982.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561986|gb|ABK38934.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 301 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 11/179 (6%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS---SLGSYNEKLSIVFFDIDY 138 + +++ +I ++ + R+ S D L+GL N F + ++V DID+ Sbjct: 120 VAWVTRNITRQYELQ-QRLKLQSETDQLTGLYNRRYFFEHCRQRRAGEAPCALVMLDIDH 178 Query: 139 FKQINDNFGHPVGDKVIA-FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FKQIND FGH GD+ + F + + MFV R GGEEF G SE + LA Sbjct: 179 FKQINDRFGHQQGDRALQRFCACVAAQLRADDMFV-RSGGEEFLILLPGMSEPDLLALAE 237 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R + + + P+ T+S G E I+ + RAD+ LY AK++GRNRV Sbjct: 238 RIRAAV----AALPADPAA-FTVSLGTTLVRPGEEINQALARADEWLYRAKRAGRNRVA 291 >gi|269967761|ref|ZP_06181809.1| GGDEF family protein [Vibrio alginolyticus 40B] gi|269827667|gb|EEZ81953.1| GGDEF family protein [Vibrio alginolyticus 40B] Length = 412 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 22/173 (12%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 QL+ D L+ + + A L +K +I D+D+FK+ ND +GH GD V+ ++ + Sbjct: 236 QLAFTDSLTLIPSRRALDLDLKHMGKKFTIAMLDVDHFKKFNDTYGHDTGDDVLKMVASR 295 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI------------- 208 L G V R GGEEF G E + RK I ++ Sbjct: 296 LTKTPGGAK-VYRFGGEEFTIVFKGKYADECKNFLEEARKSIAEYEMILRDEESRPENHK 354 Query: 209 --------NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 N S S+ +T S G+A+ + + +I AD+ALY AKK+GRN Sbjct: 355 QGQKRRGSNSSKRKSVFVTASFGVADSRNGQAPLDVIKLADEALYKAKKAGRN 407 >gi|119487017|ref|ZP_01620889.1| regulatory components of sensory transduction system [Lyngbya sp. PCC 8106] gi|119455946|gb|EAW37080.1| regulatory components of sensory transduction system [Lyngbya sp. PCC 8106] Length = 321 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 13/166 (7%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ +D L+ + N F +L + L ++ DID FK ND FGH GD+ + Sbjct: 145 LATLDGLTKIPNRRCFDETLNQEWLRLCREQKSLHLILCDIDCFKNYNDTFGHIAGDQCL 204 Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213 ++ L V P V R GGEEFA +S Q A +A +++ ++ I S+ Sbjct: 205 IKVAQTLYEVVRRPADLVARYGGEEFAIILPNTSAQGAIYIAERIQEAMQKLAIPHSASL 264 Query: 214 PSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S ++T+S GIA C + P+S +I +DQALY AK G+NR + Sbjct: 265 VSSYVTLSMGIAGGIPCCEESPLS-LIDISDQALYQAKMEGKNRFI 309 >gi|78484845|ref|YP_390770.1| diguanylate cyclase [Thiomicrospira crunogena XCL-2] gi|78363131|gb|ABB41096.1| diguanylate cyclase (GGDEF domain) [Thiomicrospira crunogena XCL-2] Length = 458 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N AF ++ ++ L +V D+D+FK +ND GH VGD V+ ++ Sbjct: 288 DSLTGFPNRRAFDLEFEKALAFAKRHDFWLDLVVVDVDFFKAVNDEHGHVVGDAVLKRVA 347 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L V T + R GGEEF L + + +LA +RK +E+ + + +T Sbjct: 348 EILDDVARTEDMLFRWGGEEFVIITLDKDSEGSEMLAERIRKAVEDEVFFAGTDQEMRLT 407 Query: 220 ISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 +S G +S + AD+ LY+AK+SGRN+V Sbjct: 408 VSCGALSYWAGLSLSEEEVFELADKQLYLAKESGRNQV 445 >gi|297581532|ref|ZP_06943455.1| GGDEF family protein [Vibrio cholerae RC385] gi|297534370|gb|EFH73208.1| GGDEF family protein [Vibrio cholerae RC385] Length = 312 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS + S+ID L+ L N F S + L ++ FDID+FKQIND +GHP GD Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L R GGEEF LA ++R +E+ + + Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRGYVESHTL-MWQ 264 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+SAG A H +++ ADQAL AK+ GRNRV+ Sbjct: 265 GQQIALTLSAGCTMGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309 >gi|152966403|ref|YP_001362187.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans SRS30216] gi|151360920|gb|ABS03923.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans SRS30216] Length = 683 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 13/163 (7%) Query: 107 DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N S F++ + S +++ ++F D+D FK +ND+ GH GD+++ ++++L Sbjct: 195 DALTGLANRTQLSEFLTRVLSRRDQVGVLFVDLDDFKNVNDSRGHAAGDQLLLAVAERLR 254 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V RLGG+EFA G + + L + + ++ G IH+ S G Sbjct: 255 ACVRGSDLVARLGGDEFAVVIHGGAAPARRVGERFLASLAQPVDVD---GQPIHVHASLG 311 Query: 224 IAERC-------HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 A+ + + ++ AD A+Y AK +G+NR+V +S Sbjct: 312 TADTATLCGTLSELDTATELLRNADLAMYWAKAAGKNRLVAYS 354 >gi|330958705|gb|EGH58965.1| GGDEF domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 524 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 107 DCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLDVEFKRARRERSMLSLILIDADHFKRYNDHYGHLAGDECLVTLA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A + E A +A + K I+N +I P + Sbjct: 396 RLVEQCIRRPCDVAARYGGEEMAVVLPDTDESSARQVAESILKSIQNERIEHPDSPYGIV 455 Query: 219 TISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 T+S G+A ++ +I AD+ALY AK GRNRV S+ Sbjct: 456 TVSLGVATFIGTDRQQDQRGLIELADRALYAAKSQGRNRVNVASE 500 >gi|329906325|ref|ZP_08274386.1| putative signal peptide containing protein [Oxalobacteraceae bacterium IMCC9480] gi|327547303|gb|EGF32143.1| putative signal peptide containing protein [Oxalobacteraceae bacterium IMCC9480] Length = 862 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 14/170 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 ++++ LS D L+GL N F L S L+++ D+D+FK+ ND +GH Sbjct: 690 DKLATLSATDGLTGLANRRHFDEILASEWGRASRTGMPLAVLMIDVDHFKKFNDCYGHQA 749 Query: 151 GDKVIAFLSDQLVVVFGTPM---FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD + ++ L GT R GGEEF+ + A LA+ +R IE Sbjct: 750 GDACLRRIAAALQA--GTRRSSDLAARYGGEEFSIVLPNTDGSTAWQLADVVRGAIEQLA 807 Query: 208 INISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255 + + PS +TIS G+A P ++ ++ AD ALY+AK +GRNRV Sbjct: 808 MPHARAPSGLVTISIGVAICRAGSPGSVAGLLRAADDALYLAKDAGRNRV 857 >gi|313681787|ref|YP_004059525.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313154647|gb|ADR33325.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 612 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 2/132 (1%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DIDYFK +ND +GH GD VI LS+ LV R GGEEF ++ Sbjct: 473 AVLMIDIDYFKMVNDTYGHDAGDVVIKSLSEILVQSIRKADLPVRYGGEEFLVLLHNTTP 532 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248 + A +A +R + + + + SI T+S GIA + I +I AD ALY K Sbjct: 533 EGALGVAEKIRTVFNDKKFQFGN-DSIQKTLSIGIAHFPTQADSIWKVIKFADIALYEGK 591 Query: 249 KSGRNRVVCFSD 260 +GRNRV+ F D Sbjct: 592 HTGRNRVIEFED 603 >gi|307298756|ref|ZP_07578559.1| diguanylate cyclase with PAS/PAC sensor [Thermotogales bacterium mesG1.Ag.4.2] gi|306915921|gb|EFN46305.1| diguanylate cyclase with PAS/PAC sensor [Thermotogales bacterium mesG1.Ag.4.2] Length = 613 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 14/165 (8%) Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ D L+G++N + L Y+ LS++ FD+D K +NDNFGH GD Sbjct: 451 KKLATTDMLTGVMNRYSLTELLKLETERSRRYSAPLSLIMFDLDNLKTVNDNFGHLAGDD 510 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS- 212 + + + +GR GG+EF A + + A +A LR + S I+ Sbjct: 511 ALKVTCSFVQSNIRSCDDIGRWGGDEFLIVATNTDLEGAVKMAEKLRSGL--SSIDKKEY 568 Query: 213 GPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 GP +TIS G+ E ++ RAD+ALY +K+SG+NRV Sbjct: 569 GP---LTISIGVTTLLENESDFDGLLRRADEALYESKRSGKNRVT 610 >gi|311235158|gb|ADP88012.1| diguanylate cyclase with hemerythrin-like metal-binding domain protein [Desulfovibrio vulgaris RCH1] Length = 613 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N + F + L + LS++ FD D+FK ND +GH GD Sbjct: 290 QRAGIDPLTGLCNRARFDEVLLAELQRLQRQDSPLSLMMFDADHFKPYNDMYGHVAGDAC 349 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L V V R GGEEF G+ A LA +R+ + I Sbjct: 350 LKRVAGVLRAVAHRASDVVARYGGEEFVCILPGTDRDSAYALAEKVRQGVRALAIPHVGS 409 Query: 214 PSIHI-TISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P + T+SAG+ C ++ + D+ALY AK +GR+RV+ Sbjct: 410 PVAGVLTVSAGVVTVHGCDGLDPQEVVAQVDRALYQAKGAGRDRVM 455 >gi|226303624|ref|YP_002763582.1| hypothetical protein RER_01350 [Rhodococcus erythropolis PR4] gi|226182739|dbj|BAH30843.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 796 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 12/180 (6%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFK 140 GS + E + RI L+ D L+GL N F + L E++ + D+D FK Sbjct: 356 GSDITEKYNYERRILWLAATDGLTGLPNRRTFGTELSDALGAVRTGEQVLVGILDLDNFK 415 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND GHPVGDK++ ++ +L V M R+GG+EF G+ + + A L Sbjct: 416 SVNDTLGHPVGDKLLISVAARLNRVVDGAM-CARIGGDEFGVVLRGTGDG-GEVFARYLG 473 Query: 201 KIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + E + G I + S G A E T++ AD ALY AK +G+NRV +S Sbjct: 474 ALREPFFVR---GNRIEVRASIGYASSPADSEDADTLVMSADLALYAAKSAGKNRVGKYS 530 >gi|119899156|ref|YP_934369.1| GGDEF/PAS/PAC-domain-containing protein [Azoarcus sp. BH72] gi|119671569|emb|CAL95482.1| GGDEF/PAS/PAC-domain containing protein [Azoarcus sp. BH72] Length = 342 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 15/226 (6%) Query: 42 VIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLLG--YISGSILKELFIS 96 V +A++ Y + E+ L E +L ++ + T L +S ++ K L S Sbjct: 110 VTALADVTALYDTIDRLRDSEHRLQELNADLEHLVAARTAELAERNRELSDAVAK-LEAS 168 Query: 97 YNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 R+ L+ D L+GL N + + + + ++F D+D FK +ND GH GD Sbjct: 169 RARVEHLALHDPLTGLPNRTQLRQVLDEMLALPGSFGVLFIDLDGFKPVNDTLGHDSGDL 228 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINIS 211 V+ ++ +L FVGRLGG+EF A L +++ AA + K+I + I I Sbjct: 229 VLVTVAQRLREALPAECFVGRLGGDEF-VAVLPHTDRAAACAVGE--KLIAALAAPIVIE 285 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + S G+A H +++ AD+A+Y AK+SG+ RV Sbjct: 286 GGAQCQLGASIGVALGPQHGRNRRSLLTAADRAMYAAKRSGKGRVA 331 >gi|262373376|ref|ZP_06066655.1| GGDEF domain-containing protein [Acinetobacter junii SH205] gi|262313401|gb|EEY94486.1| GGDEF domain-containing protein [Acinetobacter junii SH205] Length = 429 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 2/133 (1%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + + + D+D+FK++ND +GH +GDK + + ++ + +GRLGGEEFA Sbjct: 294 QQTTAFLMLDLDHFKKVNDTYGHQMGDKALKYCVQEIHSLLRPNDLLGRLGGEEFAIFMS 353 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQA 243 A A ++R I I ++ +I +S GI +++ I + +AD A Sbjct: 354 DIDPDTAFQYAENIRLNISKMPIPLNDQQQFYIQVSIGICLCTPENQQSIDALFKQADDA 413 Query: 244 LYVAKKSGRNRVV 256 LY AK GRN+VV Sbjct: 414 LYQAKHQGRNQVV 426 >gi|73539291|ref|YP_299658.1| GGDEF [Ralstonia eutropha JMP134] gi|72122628|gb|AAZ64814.1| GGDEF [Ralstonia eutropha JMP134] Length = 419 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 9/164 (5%) Query: 101 SQL---SRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 SQL S+ D L+ L N F G + +S++ FD+D+FK IND +GH GD Sbjct: 245 SQLLLESQTDYLTRLGNRRWFFEQGSRILDGGASGPVSVLAFDLDHFKAINDLYGHQTGD 304 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ ++ V G + R+GGEEFAA G A L + ++ + + + Sbjct: 305 KVLKSFAETARSVVGADAILARIGGEEFAAVLSGHDAARAQSLGESVARLFAETTSSRTD 364 Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 + T+S G+A + P + + ADQALY AK G NR+ Sbjct: 365 SLGVPATVSIGLAHFEDEVPALVEGLAAADQALYRAKSLGGNRL 408 >gi|10957409|ref|NP_051626.1| GGDEF family protein [Deinococcus radiodurans R1] gi|6460838|gb|AAF12542.1|AE001826_11 GGDEF family protein [Deinococcus radiodurans R1] Length = 364 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 72/161 (44%), Gaps = 9/161 (5%) Query: 107 DCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+G L+ LG S E+ ++ D+D+FK +ND++GH GD+ + + Sbjct: 208 DALTGTLSRRGLEKKLGTLWRTSSPEQTLLLMVDVDHFKGVNDSYGHLTGDQALQMIGVT 267 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L +GR GGEEF S +E + L I + + P +TIS Sbjct: 268 LRAAASEHALIGRWGGEEFVMVLPCQSAREHQQVTEQLLHTIRT--LRVDHLPP--LTIS 323 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 AG A + +I AD LY AK GRNR V +E Sbjct: 324 AGGATFAEAPSLEAVIAMADSRLYQAKDGGRNRAVLPVPVE 364 >gi|296387790|ref|ZP_06877265.1| two-component response regulator [Pseudomonas aeruginosa PAb1] Length = 342 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 12/168 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK ND FGH GD Sbjct: 167 LQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGD 226 Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + + R GGEEFA G+S A +LA +R+ +E+ QI + Sbjct: 227 EALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHD 286 Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P ++T+S G++ + +I ADQALY AK +GRN+V Sbjct: 287 QPRPGSYLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 334 >gi|257095583|ref|YP_003169224.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048107|gb|ACV37295.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1399 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 14/172 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGHP 149 +IS L+ D L+ L N S L + ++++F D+D FK IND GH Sbjct: 966 KISHLAHFDTLTDLPNRSNLQGRLDQALASARREGHGRSVAVMFLDLDRFKNINDTLGHH 1025 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QI 208 VGD ++ ++ +L V RLGG+EF G+ A +A + K + + QI Sbjct: 1026 VGDALLLEVAARLRSSVRDSDVVARLGGDEFVVVLTGADALAAERVAGKILKALSRAYQI 1085 Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G ++H T S GIA E + ++ AD A+Y AK +GRN V F+ Sbjct: 1086 ---EGHALHSTSSIGIAVFPADGESVEVLMQNADAAMYHAKSAGRNNVQFFT 1134 >gi|242278020|ref|YP_002990149.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio salexigens DSM 2638] gi|242120914|gb|ACS78610.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfovibrio salexigens DSM 2638] Length = 495 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 107 DCLSGLLNHSAFISSLGSY-----NE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F L + NE +LS++FFDID+FK++ND +GH GDK + L+ Sbjct: 331 DPLTGVTNRRLFEHRLQEFIDHSINEGTELSVLFFDIDHFKELNDKYGHQAGDKGLRHLA 390 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-I 218 + RLGG+EF + + A+ + L ++++ IH + Sbjct: 391 KICESYLRHNDILARLGGDEFVLLLPKTDPKTASAIGKRLLDAVKSTPFEYDG--KIHRM 448 Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 TIS G+A + + +I RAD ALY AK+ GRNR+ + Sbjct: 449 TISIGLASNDGRLTTPARLIERADTALYEAKQRGRNRLETLT 490 >gi|205374348|ref|ZP_03227146.1| diguanylate cyclase with GAF sensor [Bacillus coahuilensis m4-4] Length = 185 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 8/141 (5%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + LS++ DID+FKQIND +GH G++++ LS +L G V R GGEEF Sbjct: 43 QNLSLILLDIDHFKQINDTYGHQAGNEILIDLSRRLQNFIGKKGTVARFGGEEFVVLLPD 102 Query: 187 SSEQEAAILANDLRKIIENSQINISS------GPSIHITISAGIAER-CHKEPISTIIYR 239 + EA LA R +E+ + ++IT S G++ + + ++ Sbjct: 103 FEKNEAVELAEQFRLSLESEPFPVHDTMVAPLNDRVYITASFGVSSAFLDSDDETALVRN 162 Query: 240 ADQALYV-AKKSGRNRVVCFS 259 AD+ALYV AK+ GRN+V +S Sbjct: 163 ADRALYVGAKQKGRNKVASYS 183 >gi|254422604|ref|ZP_05036322.1| GGDEF domain protein [Synechococcus sp. PCC 7335] gi|196190093|gb|EDX85057.1| GGDEF domain protein [Synechococcus sp. PCC 7335] Length = 768 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 103/255 (40%), Gaps = 41/255 (16%) Query: 45 IANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFIS-------- 96 + ++ + + + F GLE V I I L + + I++E+F + Sbjct: 512 LPDLLILDLEMPQFNGLELCQVIRSDPRTAQIPILFLSAHTAPEIVREVFEAGADDYISK 571 Query: 97 -----------YNRIS------QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIV 132 NR+ +L+ ID L+GL +L L + Sbjct: 572 PVVDHELIGRILNRLERQRLLRKLAEIDSLTGLSRRRQSAETLERLLRLSVRQGVPLCMA 631 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FKQIND +GH VGD+V+ ++ L F V R GGEEF S++ + Sbjct: 632 LLDLDHFKQINDRYGHDVGDQVLKVFAEYLRNSFRGEDVVARWGGEEFVVGLYNVSKERS 691 Query: 193 AILANDLRKIIENSQINISSGP--------SIHITISAG-IAERCHKEPISTIIYRADQA 243 N LR+ S +++S G + E + + RADQA Sbjct: 692 LQRLNTLRESFGQHIFQAKSSAFYQSDLLLEFQVSLSGGMVTAPADGETVEMLYRRADQA 751 Query: 244 LYVAKKSGRNRVVCF 258 LY AK +GRN++ F Sbjct: 752 LYRAKAAGRNQICIF 766 >gi|148554415|ref|YP_001261997.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1] gi|148499605|gb|ABQ67859.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1] Length = 741 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 22/184 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 ++L + ++ L+ D L+GL N + F L E L++V+ D+D+FK +N Sbjct: 305 RQLSAAKSQAQHLADHDPLTGLANRALFERRLNERLGEICLTGETLALVYVDLDHFKNVN 364 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILAND 198 D+ GHP GD++I L+D ++ V RLGG+EFA + ++EQ A + Sbjct: 365 DHLGHPTGDQLIRALAD-ILSELAPGDVVARLGGDEFAIIHGSDNSAATAEQLARSIHRT 423 Query: 199 LRKIIE--NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 L + I+ N ++ I + + + G+ +R ++ +AD ALY AK+ GR R Sbjct: 424 LARPIDLGNGEVLIGASIGVAVAPQDGL-DRVE------LVRKADIALYDAKRGGRRRHS 476 Query: 257 CFSD 260 ++D Sbjct: 477 FYAD 480 >gi|320162522|ref|YP_004175747.1| putative signaling protein [Anaerolinea thermophila UNI-1] gi|319996376|dbj|BAJ65147.1| putative signaling protein [Anaerolinea thermophila UNI-1] Length = 782 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 26/232 (11%) Query: 33 IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE 92 +F ++++ + A IFLF L + E E L +I +SL L Sbjct: 552 LFTALYVKGEVLGA-IFLFTRDLARKFTAE----EKELLEVIGAQMSLALANA------- 599 Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 +S+ L+ +D L+G+ N F + Y +++ D+D+FK+ ND Sbjct: 600 --LSFREQQILAELDSLTGIYNRRKFFEIAAAELERSARYLRPCALLMMDLDHFKEYNDT 657 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGH GD+++A L+ + R GG+EF +++ A +A L + + Sbjct: 658 FGHQAGDQLLAELAQTFRRSLREFDTLARYGGDEFILLLPETTQDSALRVAERLLRRVRE 717 Query: 206 SQINISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNR 254 I +I +++S GIA C H + +++ AD+ALY AK++GR+R Sbjct: 718 KNAGIPEPHAIPLSLSIGIA--CFPQHARDLGSLLKCADEALYRAKQNGRDR 767 >gi|261820598|ref|YP_003258704.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] gi|261604611|gb|ACX87097.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] Length = 307 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 7/158 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAF 157 RI S D L+ L N FI+ L + K+ +F DID FK IND +GH GD++++ Sbjct: 145 RIQSFS--DELTQLPNRRFFINELKNLEAKIPYLFIIDIDNFKTINDRYGHTKGDEILSK 202 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L + + R+GGEEFA ++ +A LA RK+++N+ I H Sbjct: 203 FGHILSRFDNSEVVATRIGGEEFAMILYTGTQDQAEALA---RKVLKNANKIIIKNMQ-H 258 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++S G + +E + R D ALY AK +G+ +V Sbjct: 259 LSVSIGAGRKQPQESTEHFMTRVDIALYQAKTTGKGKV 296 >gi|222148194|ref|YP_002549151.1| GGDEF family protein [Agrobacterium vitis S4] gi|221735182|gb|ACM36145.1| GGDEF family protein [Agrobacterium vitis S4] Length = 674 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 12/170 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+G+ N A L S + + D+D+FK+ ND +GH GD Sbjct: 228 RLSNTDYLTGVENRRAIDQRLRDNWAEWQSSGTGFAAILVDVDFFKKYNDYYGHQAGDHC 287 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISS 212 + +++ L + +GR GGEEF A +S + +LA +R +E S ++ Sbjct: 288 LVLVANALKTALLPFNASIGRYGGEEFIVLAPAASRDDVGLLAEMIRNTVEKMSLVHDQR 347 Query: 213 GPSIH-ITISAGIA-ERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259 I+ +T+S G A R H P + II AD+ALY AK +GRN V F Sbjct: 348 KDGINVVTVSVGAAFTRPHFGPRLEKIITEADRALYSAKANGRNCVRLFD 397 >gi|220923552|ref|YP_002498854.1| diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans ORS 2060] gi|219948159|gb|ACL58551.1| diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans ORS 2060] Length = 526 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 31/227 (13%) Query: 43 IFIA-NIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101 +F A N+F+ GL+ + + ++ L+LV +++ SL L +++E ++ Sbjct: 36 VFAAFNLFILQHGLSDLF--TFAMLMGLTLVGVTVRKSLKLR----RVMRERDMAAAHAE 89 Query: 102 QLSRIDCLSGLLNHSAFISSL-----GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++R D L+GL N + ++ G ++ +++ DID FK +ND +GH GD V+ Sbjct: 90 AVARHDALTGLANRRLLLEAIDKLLAGDHSPVSGAVLLIDIDRFKPVNDLYGHAAGDAVL 149 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGS------SEQEAAILANDLRKIIENS 206 ++D+L + + RLGG+EFA A LGS +EQ A +A + +E + Sbjct: 150 CAIADRLRSLAPSQGLAARLGGDEFALLVRAELGSEALARLAEQVIASIA----RPVEWA 205 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 Q + G +I IT+ + H I++ AD A+Y KK GR Sbjct: 206 QAELKVGATIGITLISRDDLDAH-----AIMHAADLAMYQGKKEGRG 247 >gi|144898061|emb|CAM74925.1| response regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 312 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQIN 143 ++L ++ R+ QL+ +D L+G N F + E+ +++ D+D+FK+IN Sbjct: 128 RDLRRAHERLQQLAALDYLTGTFNRGHFEMLVNRELERAERSGLTGALLLIDLDHFKRIN 187 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+V+ ++D + + +GR+GGEEFA + EA +A L + Sbjct: 188 DTHGHAAGDQVLISVADAWLRELRSCDILGRVGGEEFAVFLPETGGTEATNIAARLLQRT 247 Query: 204 ENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + I ++ IT S G A C + + T++ AD+ LY AK++GR+R+ Sbjct: 248 RDLPIVWEGRQTLRITASIGGAWPVDCALD-LKTLMKAADRLLYRAKQAGRDRI 300 >gi|157962018|ref|YP_001502052.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157847018|gb|ABV87517.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 438 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 78/154 (50%), Gaps = 9/154 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 S ID LSG F+S S N S+ DID+FK+IND +GH VGD VIA +++++ Sbjct: 288 SSIDRLSGFYRKDGFMSKKMSVN---SMCLIDIDHFKKINDTYGHVVGDIVIAEVANRIK 344 Query: 164 VVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + R GGEEF G S ++ AN L I + IN I +TIS Sbjct: 345 NSMRSTDLAIRWGGEEFVVIFNGELSFEQFNSKANGLLSTINSETIN-----DIAVTISI 399 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + + + +D+ALY +K SGRN+V Sbjct: 400 GAIYSQSEMKLQEAFHLSDEALYESKNSGRNKVT 433 >gi|28900780|ref|NP_800435.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|28809226|dbj|BAC62268.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] Length = 414 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 24/174 (13%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 QL+ D L+ + + A L K +I D+D+FK+ ND +GH +GD V+ ++ + Sbjct: 236 QLAFTDSLTQIPSRRALDLDLKHMGRKFTIAMLDVDHFKKFNDTYGHDIGDDVLKMVASR 295 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH- 217 L+ G V R GGEEF G + ++ + RK I ++ + +S P H Sbjct: 296 LMKTRGGAK-VYRFGGEEFTMVFKGKNVEDCRQYIEEARKAIAEYEMILRDKASRPDDHK 354 Query: 218 -----------------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 +T S G A+ R +EP + +I AD ALY AKK+GRN Sbjct: 355 QGQQNRGTEDMQRESVFVTASFGAADSRNGREP-AEVIKLADAALYKAKKAGRN 407 >gi|88800852|ref|ZP_01116407.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Reinekea sp. MED297] gi|88776425|gb|EAR07645.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Reinekea sp. MED297] Length = 857 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 12/173 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+ L N F+ L + +++F D+D FK IND GH GD Sbjct: 416 IQHLAYHDALTDLPNRHLFLDRLDQALLRTQRSKQYGALIFVDLDNFKTINDTKGHLAGD 475 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLR-KIIENSQIN 209 V+A ++++L F V RLGG+EF LG +EQEA +A+D K+++ + Sbjct: 476 AVLADVAERLKHAFREVDTVARLGGDEFVICMTDLGRTEQEAYDIAHDRSVKLMDAMKRP 535 Query: 210 I-SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G + ++ S G+A H S ++ AD A+Y AK++G+NR++ F + Sbjct: 536 FQTQGDQLIVSASLGLAFFHDHSLTASELLSHADMAMYRAKETGKNRIILFQE 588 >gi|327193126|gb|EGE60036.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 422 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 11/173 (6%) Query: 97 YNRISQLSRIDCLSGLLNHS-----AFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHP 149 YN + + + D L+G+ + + A + + + LS ++ D D+FK +ND +GH Sbjct: 249 YNDLLERTGRDMLTGVYDRTRMELEAPLMLREALRQGLSATVLIIDADHFKDVNDGYGHL 308 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ +L + + R GGEEF A G++ +E +LA LR I S Sbjct: 309 QGDVVLKSIAARLGTTLRSSDRIFRFGGEEFVAVCPGTNHEEGLLLAERLRWTIATSVKT 368 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 P +T+S G+A +T++ AD LY AKK GRN VV S + Sbjct: 369 PDGSP---VTVSIGVATADEDGTSFTTVLSAADGRLYAAKKGGRNCVVGRSGL 418 >gi|296449740|ref|ZP_06891510.1| probable signaling protein [Clostridium difficile NAP08] gi|296877943|ref|ZP_06901962.1| probable signaling protein [Clostridium difficile NAP07] gi|296261464|gb|EFH08289.1| probable signaling protein [Clostridium difficile NAP08] gi|296431011|gb|EFH16839.1| probable signaling protein [Clostridium difficile NAP07] Length = 537 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 16/176 (9%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 Y + + D L+ + N F + + G + L I+ D+D FK+INDNFG Sbjct: 362 KYEELKTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKKDALFII--DLDDFKEINDNFG 419 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206 HP GD V+ +D++ FG+ VGR+GG+EF +E A +L +++ ++ Sbjct: 420 HPFGDFVLKTFADKIQASFGSRDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDN 479 Query: 207 QINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 ++S S ++S GIA R ++ S + AD+ALY K SG+N F + Sbjct: 480 YTDLSF--SFDASVSIGIA-RYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEE 532 >gi|315500371|ref|YP_004089174.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB 48] gi|315418383|gb|ADU15023.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB 48] Length = 657 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 16/217 (7%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L G +LV NL+L ++++ L ++ + ++ R+++L+ D L+GL N Sbjct: 182 LVTLRGNHRLLVRNLTLEDRNLSLIKQLSEVNQVLEAKVSERTERLARLAHTDKLTGLFN 241 Query: 115 HSAFI----SSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 + + + ++VFF D+D FKQ+ND H GDKV+ ++ Q+ V Sbjct: 242 RYGLFDWHQKRIEAEPKTRTVVFFLDLDRFKQVNDALSHEAGDKVLTAIAQQIESVAPPQ 301 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS---QINISSGPSIHITISAGIAE 226 + R GG+EF A + + A L +++ + + + +NI G + + +S G A Sbjct: 302 ARLARWGGDEFVLACPVTGDVHA--LVDEVSEAVSRAVDIPLNI-EGTDLKLGVSIGWA- 357 Query: 227 RCHKE---PISTIIYRADQALYVAKKSGRNRVVCFSD 260 CH + S I++ AD A K+SGR R + F + Sbjct: 358 -CHPDHDKTFSDIVHAADLATTEVKRSGRGRTLAFDE 393 >gi|254457680|ref|ZP_05071108.1| cache sensor signal transduction histidine kinase [Campylobacterales bacterium GD 1] gi|207086472|gb|EDZ63756.1| cache sensor signal transduction histidine kinase [Campylobacterales bacterium GD 1] Length = 642 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 11/163 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 + S D L+G+ N S + Y + LS++ DID+FK+IND GH VGD+V Sbjct: 483 KKSLTDPLTGVYNRSKAEDVMSHEINLAKLYGQPLSLIMLDIDHFKEINDTLGHAVGDEV 542 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + + V R GG+EF + ++AA+ A ++R +IE++ Sbjct: 543 LVEFIKVINNNSRSNDIVIRNGGDEFLIICPNTEAKDAALHAENIRSLIESNNY----KK 598 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++T S G+ + I R D+ALY+AK+ GRN VV Sbjct: 599 DYNVTSSIGVTSYQTGDTKEAIFKRVDKALYIAKEKGRNCVVS 641 >gi|21106717|gb|AAM35503.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306] Length = 326 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 19/180 (10%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-----------ISSLGSYNEKLSIVFFDIDYFKQI 142 F +Y + ++ + L+GL N F S L IV DID+FK++ Sbjct: 135 FQNYRSLLDDAQRNALTGLRNRKTFDDVILRLFAGGADSAAEQGVWLGIV--DIDHFKRV 192 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH GD+V+ ++ + F + R GGEEF G A L R Sbjct: 193 NDTFGHLYGDEVLLLVAQLMQRAFRQDDLLFRFGGEEFVIVLRGVDRDTAVSLFERFRLA 252 Query: 203 IENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + P + +T+S GI E H IS ++ AD+ALY AK++GRNR ++++ Sbjct: 253 VAEHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQNGRNRAAVYAEL 307 >gi|327183909|gb|AEA32356.1| regulator component [Lactobacillus amylovorus GRL 1118] Length = 374 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-NEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GLLN+ AF + + EK S + D+D+FK +ND +GH G+ V+ S + Sbjct: 209 DDLTGLLNYRAFAQDMRNLAREKDSTPVLLAILDLDHFKNVNDTYGHLNGNVVLRAFSRK 268 Query: 162 LVVV----FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L F + V R GGEEF S + L N+L + + + I G I+ Sbjct: 269 LESEVHHNFDSNCAVYRFGGEEFTIVVKDDSYAKVIKLLNNLNEYFASHPVKIPDGQQIY 328 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + S G+ E + RAD +Y AK GR R++ S ++ Sbjct: 329 FSFSGGLTRHLEDETFDQTLARADTLVYQAKNLGRRRILYKSKTDD 374 >gi|306841742|ref|ZP_07474428.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] gi|306288147|gb|EFM59534.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] Length = 461 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 9/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S R S D L+GL N ++ + LSI+ D+D+FKQ+N+ +GH Sbjct: 288 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 347 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ S +L + R GGEEF + Q A +A +R I+ + Sbjct: 348 GAGDHVLREFSARLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 407 Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +G +T+S GIA R + + + RA AL AK+SGRNR+V Sbjct: 408 VLDNGKRRASLTVSVGIAALRLAGDSLEALFTRATDALIQAKQSGRNRIV 457 >gi|254994902|ref|ZP_05277092.1| response regulator PleD [Anaplasma marginale str. Mississippi] Length = 455 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 9/162 (5%) Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +++S D L+G N F ++ + LS++ D+D+FK++ND FGH VGD+ Sbjct: 291 AEMSITDPLTGCYNRRYFDMHFQNIVNEARDKGKDLSVMIIDVDHFKRVNDTFGHTVGDE 350 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ L ++ + R GGEEF + +A A LR+ + N S G Sbjct: 351 LLQQLRKRIFDNIRISDLLARFGGEEFVIILPETGIDQAMTAAERLRQKVAEEPFNTSGG 410 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ T+S G+AE E + RAD+ LY AK++ RN V Sbjct: 411 -ALEKTVSIGVAEFRPSEEAKDFLNRADKCLYSAKET-RNAV 450 >gi|225568775|ref|ZP_03777800.1| hypothetical protein CLOHYLEM_04854 [Clostridium hylemonae DSM 15053] gi|225162274|gb|EEG74893.1| hypothetical protein CLOHYLEM_04854 [Clostridium hylemonae DSM 15053] Length = 363 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 15/175 (8%) Query: 96 SYNRISQL-------SRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQIND 144 +Y R+ QL S D L+ L N + + S N +L + D+D FKQ ND Sbjct: 181 TYGRLQQLNQKFEYLSNQDGLTKLSNRTYLERYKQKLMDSRNAELHALMLDVDCFKQYND 240 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKII 203 N+GH GD+V+ ++ + + P + R GGEEF + ++EA A L + I Sbjct: 241 NYGHMAGDEVLKSVAGVINGLTADPDSIAVRYGGEEFLILLQEAGQKEAETFARTLLRKI 300 Query: 204 ENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +I +G ++++S GI+ + +E ++ +AD+ALY AK+SGRN ++ Sbjct: 301 HDLKIPHITGDG-YVSVSIGISRQYVSSEEKFLDLLKQADEALYCAKQSGRNCII 354 >gi|217328412|ref|ZP_03444494.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. TW14588] gi|217318839|gb|EEC27265.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli O157:H7 str. TW14588] Length = 296 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 129 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 188 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 189 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 248 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 249 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 285 >gi|212637004|ref|YP_002313529.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212558488|gb|ACJ30942.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3] Length = 845 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 12/164 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 NR++ SR++ L N S + +L +++ D+D FKQ+N++FGH +GD+V+ Sbjct: 426 NRMAVTSRLEQEIRLANRSEY---------QLGVIYIDVDLFKQVNESFGHVIGDEVLVE 476 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSI 216 LS +L + G+ + RLGG+EFA + +L + L +I E + P + Sbjct: 477 LSQRLTLAIGSLATIARLGGDEFAVILPNIESSDMLLLRLSKLPQIFERPFMLGEHAP-V 535 Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 +T S G+A ST++ AD A++ AK+ GRN ++ Sbjct: 536 RLTASMGVALYPQDGRDSSTLLVNADAAMHRAKQDGRNNYAFYT 579 >gi|121997174|ref|YP_001001961.1| response regulator receiver modulated diguanylate cyclase [Halorhodospira halophila SL1] gi|121588579|gb|ABM61159.1| response regulator receiver modulated diguanylate cyclase [Halorhodospira halophila SL1] Length = 308 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 14/177 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 +L + + +LS+ D L+ L N L + LS++ DID+FK ND Sbjct: 129 DLKRKTDALERLSQRDGLTDLPNRRVLDRQLPEEWSRCQRGDTPLSVIMMDIDHFKPYND 188 Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 ++GH GD+ + ++ L V T V R GGEEF A + +A +A R + Sbjct: 189 HYGHGAGDECLRRVARVLANVPSRTTDLVARYGGEEFIALLPYTDAPDAWQMAERFRAAV 248 Query: 204 ENSQI--NISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255 Q+ SS I IT+S G+A P + ++ ADQALY AKK+GRNRV Sbjct: 249 AALQLPHGHSSTDGI-ITMSVGVASHTADRPYDSPEQLLEAADQALYAAKKAGRNRV 304 >gi|333007296|gb|EGK26778.1| hypothetical protein SFK272_1979 [Shigella flexneri K-272] gi|333019292|gb|EGK38576.1| hypothetical protein SFK227_1579 [Shigella flexneri K-227] Length = 410 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISCLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|302186775|ref|ZP_07263448.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 332 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK +ND +GH GD V+ +++ GR+GGEEFAA G + Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247 A +A L++ I+ S G + IT S G+ +P + T+ RAD A+Y A Sbjct: 263 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGPDDPSLETLYGRADAAMYQA 321 Query: 248 KKSGRNRVV 256 K+ G+N++V Sbjct: 322 KRQGKNQIV 330 >gi|257789836|ref|YP_003180442.1| diguanylate cyclase [Eggerthella lenta DSM 2243] gi|325832333|ref|ZP_08165332.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1] gi|257473733|gb|ACV54053.1| diguanylate cyclase [Eggerthella lenta DSM 2243] gi|325486169|gb|EGC88623.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1] Length = 328 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 12/165 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 + + + +D ++ LLNH+AF ++L E + D+D FK +ND GHP GD+VI Sbjct: 170 MERRAELDSMTELLNHAAFEKYVAAALVEGGEGSAFFMIDLDNFKTVNDTLGHPEGDRVI 229 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGP 214 +D L+ VF VGR+GG+EFA + S +EA A +L IE + + S+ Sbjct: 230 QEFADVLLRVFPRDALVGRMGGDEFAVFSTCPLSVEEAQCKACEL---IE-AWGSHSASR 285 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ + S GI E + AD ALY +K +G+ C+S Sbjct: 286 AVELGCSVGIVRVVRGETFFDLYRAADCALYASKDNGKG---CYS 327 >gi|149180940|ref|ZP_01859442.1| hypothetical protein BSG1_00875 [Bacillus sp. SG-1] gi|148851459|gb|EDL65607.1| hypothetical protein BSG1_00875 [Bacillus sp. SG-1] Length = 396 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 16/165 (9%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHPVGDK 153 +++ D L+ LN FI+ G + K LS + FDID+FK+IND+ GH +GDK Sbjct: 230 KMAAYDDLTNALNRRTFITR-GKQSLKDCVKNKIPLSFILFDIDHFKKINDSNGHNIGDK 288 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + + + + +GR GG+EFA G + ++ + A ++ K IE + IN Sbjct: 289 VLINIVNCINERLSSNHLLGRYGGDEFAMLLPGMGDSDSTLFAENIIKDIEKAGIN---E 345 Query: 214 PSIHITISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + TIS G+ H + + D+ALY+AK++GRN V Sbjct: 346 IQLSYTISLGVLTVLPDTHTN-LDELYITCDKALYLAKENGRNCV 389 >gi|119896789|ref|YP_932002.1| GGDEF/PAS/PAC-domain-containing protein [Azoarcus sp. BH72] gi|119669202|emb|CAL93115.1| GGDEF/PAS/PAC-domain containing protein [Azoarcus sp. BH72] Length = 901 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 60/171 (35%), Positives = 89/171 (52%), Gaps = 13/171 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQINDNFGHPV 150 + +L+ +D L+G N AF+ + +E+L S+V D+D+FK++ND +GH Sbjct: 728 LQRLATLDPLTGTWNRRAFLER--AEHERLRYLRSEHPASLVMLDLDHFKRVNDTWGHAA 785 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ L +GRLGGEEFA + ++ + AA L LR I + + Sbjct: 786 GDAVLCHFVRVLQQRLRATDLLGRLGGEEFALLLVDTTPEGAAELTERLRAAIAEHPLPL 845 Query: 211 SSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 +I IT+SAGIA + + + RAD ALY AK GRN+VV D Sbjct: 846 GD-RTISITVSAGIAPFVQDDQNVEAALARADAALYRAKARGRNQVVLADD 895 >gi|89902369|ref|YP_524840.1| PAS/PAC sensor-containing diguanylate cyclase [Rhodoferax ferrireducens T118] gi|89347106|gb|ABD71309.1| diguanylate cyclase with PAS/PAC sensor [Rhodoferax ferrireducens T118] Length = 757 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 14/171 (8%) Query: 100 ISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 I QL+ D L+GL N H A +S +L+++F D+D FK +ND+FGH G Sbjct: 568 IRQLAFYDPLTGLPNRRLLQDRLHQA-MSQARRERGRLALLFLDLDKFKPVNDDFGHQAG 626 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDLRKIIENSQIN 209 D+++ ++ +L V RLGG+EF L S E Q+A +A + + Sbjct: 627 DELLQAVAQRLQACVRESDTVARLGGDEF-VLLLPSIEAAQDAMAVAEKIHQAF-GRPFT 684 Query: 210 ISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S+G + ++ S GIA H ++ AD+A+Y AK +GR+R V F+ Sbjct: 685 LSAGRNATMSFSTGIAVYPEHASDEKALMRHADEAMYQAKAAGRDRFVLFA 735 >gi|317489294|ref|ZP_07947810.1| GGDEF domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911600|gb|EFV33193.1| GGDEF domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 328 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 12/165 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 + + + +D ++ LLNH+AF ++L E + D+D FK +ND GHP GD+VI Sbjct: 170 MERRAELDSMTELLNHAAFEKYVAAALVEGGEGSAFFMIDLDNFKTVNDTLGHPEGDRVI 229 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGP 214 +D L+ VF VGR+GG+EFA + S +EA A +L IE + + S+ Sbjct: 230 QEFADVLLRVFPRDALVGRMGGDEFAVFSTCPLSVEEAQCKACEL---IE-AWGSHSASR 285 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ + S GI E + AD ALY +K +G+ C+S Sbjct: 286 AVELGCSVGIVRVVRGETFFDLYRAADCALYASKDNGKG---CYS 327 >gi|293603221|ref|ZP_06685654.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Achromobacter piechaudii ATCC 43553] gi|292818452|gb|EFF77500.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Achromobacter piechaudii ATCC 43553] Length = 870 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 10/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI QL+ D L+GL N + I+ ++++++F D+D FKQ+ND GHP+G Sbjct: 441 RIRQLAFYDELTGLPNRNLLLAQAEQSIARAEPERKRVAVLFLDLDRFKQVNDTLGHPIG 500 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ ++ +L + VGRL G+EF L + + A ++ +Q Sbjct: 501 DALLRDVAQRLCRLARATDIVGRLSGDEF--VMLMPDFEHGRLTAAAEHILVALAQPFSV 558 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 G +++ ++S GI+ + T++ AD A+Y AK +GRNR+ FS Sbjct: 559 GGVTLNPSVSIGISVFPENGRDMDTLLRHADMAMYQAKTAGRNRISFFS 607 >gi|289433042|ref|YP_003462915.1| diguanylate cyclase and metal dependent phosphohydrolase [Dehalococcoides sp. GT] gi|288946762|gb|ADC74459.1| diguanylate cyclase and metal dependent phosphohydrolase [Dehalococcoides sp. GT] Length = 743 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 18/181 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y + + + D L+ L NH F I+ + S++ D+D FK ND +GH Sbjct: 361 YTQATIRANTDELTRLYNHRHFHERIEQEIARGSRFGNTFSLILLDLDLFKVYNDVYGHL 420 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+++ L L + R GGEEFA G+ ++A +A +RK IE+ Sbjct: 421 AGDQLLRRLGKILENSIRSIDMAFRYGGEEFAIMLPGTKIEDAYHVAERIRKNIESK--- 477 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 SS + IT S G+A + KE II +AD ALY +K++GRNR +D+ NN+ Sbjct: 478 -SSFRDMPITASLGLANWPTDGVMKE---EIIAKADAALYRSKETGRNRTSLPADLNNNS 533 Query: 266 C 266 Sbjct: 534 T 534 >gi|264677429|ref|YP_003277335.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262207941|gb|ACY32039.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 514 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 15/212 (7%) Query: 63 YILVENLSLVIISITISLLLGYIS-----GSILKELFISYNRISQLSRIDCLSGLLNHSA 117 Y + +L+I S+ +L + +I G LK + + ++ L+R D L+GL N Sbjct: 299 YAVWRQRALLIASVMGTLTMAFIGLSFAFGVQLKRRMRAESELALLARTDGLTGLNNRRK 358 Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 + S++F DID+FK ND +GH GD V+A ++ + P Sbjct: 359 LDEIIEHEWHRAKRSHSAFSLLFVDIDWFKAYNDTYGHQAGDMVLATVARCIASNIRRPE 418 Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 R GGEEF ++ A++A ++R+ + I + IT+S G A Sbjct: 419 DSAARYGGEEFIVVLPDTTLDGGALIAENIREAVSELAIAHTGSEFGCITVSIGCAAWVP 478 Query: 230 KE--PISTIIYRADQALYVAKKSGRNRVVCFS 259 + + ++ AD+ALY AK +GRN+VV S Sbjct: 479 GKDLDVQEVLRSADKALYGAKMTGRNKVVLSS 510 >gi|262164439|ref|ZP_06032177.1| hypothetical protein VMA_000881 [Vibrio mimicus VM223] gi|262026819|gb|EEY45486.1| hypothetical protein VMA_000881 [Vibrio mimicus VM223] Length = 314 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 19/174 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D LS L N F L +N+ L++ DID FK+ ND+FGH GD Sbjct: 135 LDKMAHTDSLSNLANRLTFDEQLDVEFRRSRRHNDPLTVALIDIDEFKKFNDHFGHIAGD 194 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + I ++ L + P R GGEEFA + E+ A + N+L K +E Q+ I+ Sbjct: 195 ECIRKIAHALRSITKRPADLAARYGGEEFALILPSTEEEGAKSMVNELIKAVE--QLEIA 252 Query: 212 SGPSIH---ITISAG----IAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 P +T+S G E+ E + + AD ALY +K +GRN+ Sbjct: 253 HSPEAMNQCVTVSVGYTVLYPEQVDFEQMKAVDVAQTADNALYTSKHNGRNQAT 306 >gi|262171783|ref|ZP_06039461.1| GGDEF family protein [Vibrio mimicus MB-451] gi|261892859|gb|EEY38845.1| GGDEF family protein [Vibrio mimicus MB-451] Length = 439 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 38/174 (21%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ D L+G +N L + S++F DIDYFKQ+ND +GH +GD + Sbjct: 272 EMAHRDALTGAINRHGIRDWLQEQARLVRWQLSQFSVLFIDIDYFKQVNDVYGHGLGDDL 331 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + SD+LV R GGEEF + ++A LA LR +E Sbjct: 332 LREFALVINREIRESDRLV----------RWGGEEFVVFCAQTGIEQAVELAERLRLRVE 381 Query: 205 NSQINISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 N IH +T S GI++ E I+ + RAD+ALY AK+ GRNR+ Sbjct: 382 NHSW-------IHGDELTCSIGISQ-MEDERITETVSRADEALYRAKRLGRNRI 427 >gi|254500077|ref|ZP_05112229.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia alexandrii DFL-11] gi|222441375|gb|EEE48053.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia alexandrii DFL-11] Length = 809 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 10/163 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +I +R D L+GLLN F + + +++++FFD+D FK +NDN GH GD Sbjct: 356 KILHQARTDFLTGLLNRHGFTHRMNEAIDAADADHEIAVLFFDLDNFKWVNDNLGHFAGD 415 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINIS 211 +V+ ++ ++ + T GR GG+EFA G + A+ LA + ++++ I++ Sbjct: 416 QVLKLVTQRVSKLLKTDDCFGRFGGDEFAILLSGGDVRARAVDLATRINQVLKQP-ISL- 473 Query: 212 SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253 SG + I+ S GI+ + + ++ +D A+Y K SGRN Sbjct: 474 SGRQLQISASIGISYYPENADTADDLLQTSDVAMYRQKGSGRN 516 >gi|120601326|ref|YP_965726.1| diguanylate cyclase [Desulfovibrio vulgaris DP4] gi|120561555|gb|ABM27299.1| diguanylate cyclase [Desulfovibrio vulgaris DP4] Length = 630 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N + F + L + LS++ FD D+FK ND +GH GD Sbjct: 307 QRAGIDPLTGLCNRARFDEVLLAELQRLQRQDSPLSLMMFDADHFKPYNDMYGHVAGDAC 366 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L V V R GGEEF G+ A LA +R+ + I Sbjct: 367 LKRVAGVLRAVAHRASDVVARYGGEEFVCILPGTDRDSAYALAEKVRQGVRALAIPHVGS 426 Query: 214 PSIHI-TISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P + T+SAG+ C ++ + D+ALY AK +GR+RV+ Sbjct: 427 PVAGVLTVSAGVVTVHGCDGLDPQEVVAQVDRALYQAKGAGRDRVM 472 >gi|167645462|ref|YP_001683125.1| response regulator PleD [Caulobacter sp. K31] gi|167347892|gb|ABZ70627.1| response regulator receiver modulated diguanylate cyclase [Caulobacter sp. K31] Length = 454 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 14/190 (7%) Query: 81 LLGYISGSILKELFISYNRIS-----QLSRIDCLSGLLNHSAFISSLGSY-------NEK 128 L + I ++ + Y R + +L+ D L+GL N L S + Sbjct: 261 LSARVKTQIQRKRYTDYLRQNLDQSLELAVTDQLTGLHNRRYMAGQLDSLVKRAALGGDP 320 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 ++ + DID+FK+IND FGH VGD+V+ + +L R GGEEF + Sbjct: 321 VAALLIDIDHFKKINDGFGHDVGDEVLREFALRLASNVRAIDLPCRYGGEEFTVIMPDTQ 380 Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGI-AERCHKEPISTIIYRADQALYV 246 +A +A +R + S ++ G + +TIS G+ A + T++ RAD+A+Y Sbjct: 381 LADALRIAERIRMHVSGSPFRVAQGSELLTVTISIGVSATSGPGDTPETLLKRADEAVYE 440 Query: 247 AKKSGRNRVV 256 AKKSGRN VV Sbjct: 441 AKKSGRNAVV 450 >gi|111222659|ref|YP_713453.1| sensor histidine kinase [Frankia alni ACN14a] gi|111150191|emb|CAJ61886.1| putative sensor histidine kinase with multiple PAS and a response regulator receiver domain [Frankia alni ACN14a] Length = 578 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 13/164 (7%) Query: 107 DCLSGLLNHSAFISSLGS---------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+GL N +F+ LG + +++ ++F D+D FK +ND+ GH GD V+ Sbjct: 385 DGLTGLPNRVSFLDRLGRALARAEADRWQDRVGLLFVDLDGFKAVNDSAGHQAGDWVLRE 444 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSI 216 ++ +L V RL G+EFA G + EA D +I+E + + GP + Sbjct: 445 VAARLRRAVRPGDTVARLAGDEFAVLCAGITSVEAVTGIAD--RIVETAAVRAPGGGPRV 502 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ ++ +P I++ AD A+Y AK+ GR+R V F + Sbjct: 503 TSSVGVAVSGPGLTDP-REILHAADIAMYAAKRQGRHRRVLFDE 545 >gi|89054522|ref|YP_509973.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1] gi|88864071|gb|ABD54948.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1] Length = 569 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 6/158 (3%) Query: 107 DCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N A ++ + +F D+D+FKQ+ND GH +GDK++ ++D+L Sbjct: 138 DELTGLGNRKYLKACFEAIAQEDSGAIALFLDLDHFKQVNDTLGHAIGDKLLCKVADRLR 197 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V R+GG+EFA + + A +A + K+I + + G + I +S G Sbjct: 198 KSVREGDIVVRIGGDEFAILLINWDQSAAEDVAARIIKVI--GRPFLIEGHQVTIGVSIG 255 Query: 224 IAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSD 260 +A R E S ++ RAD ALY +K+ GRNR F D Sbjct: 256 MAVRLPNERESEKLLQRADVALYESKRLGRNRFHWFKD 293 >gi|229194941|ref|ZP_04321722.1| Sensory box/GGDEF [Bacillus cereus m1293] gi|228588509|gb|EEK46546.1| Sensory box/GGDEF [Bacillus cereus m1293] Length = 569 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ + +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKREFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|254502820|ref|ZP_05114971.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222438891|gb|EEE45570.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 498 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDK 153 ++ + D L+ L N +F +L + + K ++V FD+D FK IND GH GD+ Sbjct: 321 LAHQANTDALTNLGNRWSFEQTLDALSAKADGTKEFALVCFDLDRFKTINDTLGHETGDE 380 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ ++ + L + V RLGG+EF G +++E +LA I SQ +G Sbjct: 381 VLKYVGETLSSLTYPQDKVFRLGGDEF-VIVYGLTDRE-RVLAVAKEAIAILSQRVTLNG 438 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S H SAGIA EP++ ++ RAD ALY +KK GR +V + Sbjct: 439 HSCHFGASAGIA--YSTEPVN-LLRRADTALYASKKKGRGQVTVY 480 >gi|294636778|ref|ZP_06715116.1| GGDEF protein [Edwardsiella tarda ATCC 23685] gi|291089993|gb|EFE22554.1| GGDEF protein [Edwardsiella tarda ATCC 23685] Length = 351 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 67/138 (48%) Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 I +L I DID FKQIND++GH GD+V+ L+ ++ R GGE Sbjct: 212 ILTLEREQRPCCIAMIDIDNFKQINDHYGHLCGDQVLITLAKMANQTLSPQDYIARFGGE 271 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EF +A LR++I ++ + + G +T S G+ + I Sbjct: 272 EFIILFAELELSQANARCEHLRRLISHAPLYLGHGQRAWVTASFGLTRFDGYSDLEHAIA 331 Query: 239 RADQALYVAKKSGRNRVV 256 +AD+ALY AK+ G+NR++ Sbjct: 332 QADEALYRAKRQGKNRII 349 >gi|264678991|ref|YP_003278898.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni CNB-2] gi|262209504|gb|ACY33602.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni CNB-2] Length = 458 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 78/161 (48%), Gaps = 21/161 (13%) Query: 107 DCLSGLLNHSAFISSLGSYN--------EKLSI----VFFDIDYFKQINDNFGHPVGDKV 154 D L+GL N SA GSY E+ + + D+D FKQ+ND FGH GD+V Sbjct: 275 DDLTGLPNRSA-----GSYELENCQRIAERQGVPYALIMCDVDLFKQVNDQFGHEAGDQV 329 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L + V R GGEEF G Q A LA LR+ I + S Sbjct: 330 LQQIAKVLRNTVRSSEHVARWGGEEFLIIVPGVGLQAALELAERLRRSIASH----SYAA 385 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + IT+S G+ E + ++ R D ALY AK SGRN+V Sbjct: 386 AGTITMSFGVGSWQAGEASAQLLRRTDMALYRAKSSGRNQV 426 >gi|220908650|ref|YP_002483961.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7425] gi|219865261|gb|ACL45600.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7425] Length = 1094 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 16/189 (8%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDID 137 IS EL I Y D L+GL N + F L Y L++ F D+D Sbjct: 637 ISARKQAELTIHYQAFH-----DLLTGLPNRALFDDRLNQALADARRYQHLLAVFFLDLD 691 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK IND GH +GD+++ ++ +L+ + R GG+EF L Q A Sbjct: 692 RFKVINDTLGHAIGDQLLQQVAQRLLPCLREIDTIARWGGDEF--TLLLPHVQTPADSVK 749 Query: 198 DLRKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 +++ + + S G ++HIT S GIA H E +T++ AD ALY AK+ GRN + Sbjct: 750 IAERLLASLKPPFSLKGHNLHITASLGIALYPHDGEDGTTLLRNADAALYRAKEEGRNGL 809 Query: 256 VCFSDIENN 264 C++ + N+ Sbjct: 810 YCYTPMLNS 818 >gi|300312320|ref|YP_003776412.1| response regulator protein [Herbaspirillum seropedicae SmR1] gi|300075105|gb|ADJ64504.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 341 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 11/177 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 ++L S + +L+ D L+G+ N F LG+ + L+++ D+D+FK N Sbjct: 161 QQLQKSNFELQRLTNTDGLTGIANRRYFDDYLGAEWRRARRDGLDLALLLIDVDFFKLYN 220 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 DN+GH GD V+ +++ L P R GGEEFA + A +A + + Sbjct: 221 DNYGHVAGDAVLRQVAEALDSSIQRPADLSARFGGEEFAMILPRTGLDGAHAIAQKVCHL 280 Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256 +E+ Q+ + S S +T+S G A +E + +I AD+ LY+AK+ GRNRVV Sbjct: 281 VESLQVPHEGSSVSAWLTVSVGAATLVPQEQQELRELIEAADRRLYLAKQQGRNRVV 337 >gi|269964051|ref|ZP_06178356.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831192|gb|EEZ85346.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 655 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 15/164 (9%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKVI 155 SR+D L+G LN S I + N+ +S + D+D FK +ND GHP GD V+ Sbjct: 477 SRLDRLTGSLNRSTIIEKIR--NQTVSAPEDMRYVLALIDLDNFKLLNDKHGHPTGDLVL 534 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + V ++GRLGGEEF E + L K I QI ++ + Sbjct: 535 KHVCKAIQVKLNKGEYLGRLGGEEFILLLKNVDEIDVPFRIQSLHKTISEKQIKSTNDET 594 Query: 216 IHITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256 +++T A +A +P+S +Y DQALY +KK+G N V+ Sbjct: 595 LNVT--ASLAYLSTSKPLSNFDELYSILDQALYQSKKNGHNAVI 636 >gi|146306844|ref|YP_001187309.1| diguanylate cyclase [Pseudomonas mendocina ymp] gi|145575045|gb|ABP84577.1| diguanylate cyclase [Pseudomonas mendocina ymp] Length = 386 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 12/222 (5%) Query: 48 IFLFYIGLTPFYGLEYI-LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106 + L YIG GL L+ N+ ++ I + Y+ +E F+ + L+ Sbjct: 165 VLLAYIGAEWLAGLPLPRLINNVLFLLFGNLIGAVGCYLLEYKSREYFLISRLMRLLADR 224 Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +F + L+++ DID+FK ND++GH GD + + Sbjct: 225 DSLTGLHNRRSFNRQFERLWRQAQRDGQSLALLLCDIDHFKAYNDHYGHQAGDTALQRVG 284 Query: 160 DQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217 + P+ +G RLGGEEFA EA A LR+ +E + I + SS + Sbjct: 285 ALIEQAARRPLDMGVRLGGEEFALLLFDIGPDEARQRAEALRQALEAAGIPHQSSDSAAV 344 Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +T+S G+A + +S I +AD+ALY AK GRN+V Sbjct: 345 LTMSIGVACLSPGTEGELSQIYEQADRALYEAKAFGRNQVAA 386 >gi|90418502|ref|ZP_01226414.1| putative response regulator component of a two-component regulatory system [Aurantimonas manganoxydans SI85-9A1] gi|90338174|gb|EAS51825.1| putative response regulator component of a two-component regulatory system [Aurantimonas manganoxydans SI85-9A1] Length = 409 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 10/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 + Q+ D L+GLLNH+ F + E+ L++ DID+FKQ+ND GH GD Sbjct: 245 LRQIMERDSLTGLLNHARFKERVTLELERSRRTGAPLTVALIDIDHFKQVNDTHGHQTGD 304 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NIS 211 +VI LS LV V R GGEEF L + A + + +R + SQI + Sbjct: 305 RVIQALSQCLVGGLRRTDVVARYGGEEFGLLLLDTPVAAAQTVLDRIR--VRFSQIGHAG 362 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S T S G+A + +I AD ALY AK++GRNR+V Sbjct: 363 DDASFRATFSGGVAGTAKGIDSTAMIAAADAALYGAKRAGRNRIV 407 >gi|46581509|ref|YP_012317.1| GGDEF domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450931|gb|AAS97577.1| GGDEF domain protein [Desulfovibrio vulgaris str. Hildenborough] Length = 655 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + ID L+GL N + F + L + LS++ FD D+FK ND +GH GD Sbjct: 332 QRAGIDPLTGLCNRARFDEVLLAELQRLQRQDSPLSLMMFDADHFKPYNDMYGHVAGDAC 391 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L V V R GGEEF G+ A LA +R+ + I Sbjct: 392 LKRVAGVLRAVAHRASDVVARYGGEEFVCILPGTDRDSAYALAEKVRQGVRALAIPHVGS 451 Query: 214 PSIHI-TISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P + T+SAG+ C ++ + D+ALY AK +GR+RV+ Sbjct: 452 PVAGVLTVSAGVVTVHGCDGLDPQEVVAQVDRALYQAKGAGRDRVM 497 >gi|332532610|ref|ZP_08408487.1| putative GGDEF domain membrane protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038031|gb|EGI74479.1| putative GGDEF domain membrane protein [Pseudoalteromonas haloplanktis ANT/505] Length = 345 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 2/125 (1%) Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 KQ+ND +GH VGD+V+ ++ L V+ +V R+GGEEFA + +++ A A + Sbjct: 217 KQVNDEYGHGVGDQVLIEVATLLRVILARG-YVFRVGGEEFALFSSFENDEAALKTAEQI 275 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 R E++ +I G +I++T S G+A+ + + + +AD+ LY AK+ GRN+V C Sbjct: 276 RARFESTTFDI-DGLAINVTTSIGVAKFKSTNSLESFVNQADKQLYKAKQFGRNKVYCKF 334 Query: 260 DIENN 264 EN+ Sbjct: 335 KKEND 339 >gi|313683571|ref|YP_004061309.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Sulfuricurvum kujiense DSM 16994] gi|313156431|gb|ADR35109.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfuricurvum kujiense DSM 16994] Length = 974 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 103 LSRIDCLSGLLN----HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N H+ +S+ N +L+++ FD+D FK IND++GH GD+++ Sbjct: 550 LANFDPLTGLANRGLLHAHLQNSIDKANRDKTQLALLMFDLDRFKDINDSYGHSAGDELL 609 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGP 214 +S++ + RLGG+EFA + ++A LA ++ + + +S+G Sbjct: 610 QMVSERFTSRLREGDLIARLGGDEFAVVLENITRPEDAGRLAQEMLGTLAEA-YRLSAGA 668 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 IH+ SAGI H + ++ AD ALY AK GR ++D Sbjct: 669 LIHVGASAGIVLFPDHGSDAAILLQHADAALYKAKAEGRGVYHYYTD 715 >gi|266619981|ref|ZP_06112916.1| putative response regulator/sensory box/GGDEF domain/EAL domain protein [Clostridium hathewayi DSM 13479] gi|288868445|gb|EFD00744.1| putative response regulator/sensory box/GGDEF domain/EAL domain protein [Clostridium hathewayi DSM 13479] Length = 611 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%) Query: 102 QLSRIDCLSGLLNHSA----FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 Q + ID L+G+ N A + L N +++ D+D FKQ+ND GHP GD+V+ Sbjct: 442 QEAMIDPLTGVKNRLAVEKILSALLHKENRSGALIMLDLDRFKQVNDTLGHPEGDRVLQK 501 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINISSGPSI 216 + L+ +FG+ FV RLGG+EF + + E A A R++I+ +Q Sbjct: 502 FAHCLIEIFGSNSFVARLGGDEFIVFSNEIALPEDA--ARKARQLIDIMAQRLEMEEKKC 559 Query: 217 HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +S GIA + ++ +I ADQALY AK +G R + +S+ Sbjct: 560 GLAVSIGIAFYPSDADSLTELIKLADQALYHAKHNGGKRYMLYSE 604 >gi|188582142|ref|YP_001925587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] gi|179345640|gb|ACB81052.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] Length = 950 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 15/174 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPV 150 RI ++R D L+GL N F L +L + + D+D FK++ND GHPV Sbjct: 518 RIITMARRDALTGLANRMVFGERLEEAAARLEDGSGAGFATLCLDLDRFKEVNDTLGHPV 577 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQIN 209 GD ++ ++++L V RLGG+EFA G+ + Q+A+ LA R I Q Sbjct: 578 GDGLLRSVAERLQSCLRETDLVARLGGDEFAIVQAGTHARQDASALAK--RLIAAFQQPF 635 Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + G ++ + +S GI+ H ++ AD ALY AK +GR C+S E Sbjct: 636 LLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKATGRG---CWSFFE 686 >gi|119898694|ref|YP_933907.1| two-component response regulator [Azoarcus sp. BH72] gi|119671107|emb|CAL95020.1| probable two-component response regulator [Azoarcus sp. BH72] Length = 301 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 85/177 (48%), Gaps = 17/177 (9%) Query: 94 FISYNRI-SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145 F+ +I L+ DCL+ + N F L G + +S+ D+DYFKQ ND+ Sbjct: 125 FVRQRKILETLAGRDCLTEIDNRRRFEEVLEREWRRAGRGSGPMSVAIIDVDYFKQYNDH 184 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +GH GD+ + ++ L G P FV R GGEEF G+ A LA +R Sbjct: 185 YGHARGDQALKAVAKAL---SGGPNRASDFVARYGGEEFVMLFPGTPADGARELAESVRH 241 Query: 202 IIENSQI-NISSGPSIHITIS-AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + I + S + H+T+S G ++ P +I AD LY AK GRNRV+ Sbjct: 242 AVASLAIPHAHSAVAPHLTVSIGGATSDDYQSPGHALIEAADTMLYRAKAEGRNRVL 298 >gi|296162931|ref|ZP_06845710.1| diguanylate cyclase [Burkholderia sp. Ch1-1] gi|295886842|gb|EFG66681.1| diguanylate cyclase [Burkholderia sp. Ch1-1] Length = 406 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 23/183 (12%) Query: 93 LFISYNRISQL----SRIDCLSGLLNHS---------AFISSLGSYNEKL----SIVFFD 135 L ++ R QL ++ D L+G LN A + +++ + S++ D Sbjct: 209 LLMAAERSHQLLFDHAQRDPLTGALNRGGLRLSYERVAAARGMARHDDTMLGLVSLIVID 268 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 +D+FK IND GH +GD V+ + T + R GG+EF A + EA L Sbjct: 269 LDHFKAINDTHGHTMGDDVLRLFATTARDDLRTGDTLARYGGDEFVAMLPHTGGDEALAL 328 Query: 196 ANDLRKIIENSQ---INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A +R N+ + ++ P++ + I+ G + + TI+ RAD+ALY +K+ GR Sbjct: 329 AERIRVAFANATGALVALAVQPTLSVGIATG---SLADDTLDTILQRADEALYRSKREGR 385 Query: 253 NRV 255 NRV Sbjct: 386 NRV 388 >gi|269962219|ref|ZP_06176572.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833050|gb|EEZ87156.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 376 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 85/185 (45%), Gaps = 21/185 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 KEL ++ +L+ D LSGL N F +S + + +S + D+DYFKQ+N Sbjct: 193 KELRCLNKKLQELAITDELSGLYNRRYFNIMTPDILSKAQAGKQTVSFISIDLDYFKQLN 252 Query: 144 DNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 D GH GD KV A LS Q G R+GGEEF + S + A L Sbjct: 253 DELGHLKGDEAITKVGALLSSQFN---GIDEIAFRMGGEEFLIVLVDSEHEHCVERAESL 309 Query: 200 RKIIENSQINISSGPSIH-ITISAGI----AERCHKEPISTIIYRADQALYVAKKSGRNR 254 R+ I I + H +T S G+ AE C I + + DQ LY AK SGRN Sbjct: 310 RESISKLSILCENNAHTHLLTSSIGVFSQRAESC--SDIRYFLDKVDQCLYKAKLSGRNT 367 Query: 255 VVCFS 259 V+ S Sbjct: 368 VIAES 372 >gi|240139816|ref|YP_002964293.1| putative diguanylate cyclase (GGDEF motif) [Methylobacterium extorquens AM1] gi|240009790|gb|ACS41016.1| putative diguanylate cyclase (GGDEF motif) [Methylobacterium extorquens AM1] Length = 352 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 18/164 (10%) Query: 106 IDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+GL N F + S++ DID+FK +ND GH GD+V+ Sbjct: 184 TDALTGLANRKTFDGFLRDSIARTRSDSGSTFSLLMLDIDHFKGLNDRHGHRFGDQVLRL 243 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLR--KIIENSQINIS 211 + L R GGEEFA A +G+ A + LR ++++ ++ Sbjct: 244 VGRLLSAKTTDRDLAARYGGEEFAIVLGEAGIGAGVALAQEICGRLRGQRLVKRGTGDVV 303 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +TISAG+A+ E ++ RAD+ALY AK++GR+RV Sbjct: 304 A----QVTISAGVAQYRPGEAARDVVERADRALYEAKRTGRDRV 343 >gi|257059586|ref|YP_003137474.1| diguanylate cyclase [Cyanothece sp. PCC 8802] gi|256589752|gb|ACV00639.1| diguanylate cyclase [Cyanothece sp. PCC 8802] Length = 462 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 11/180 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + +++ L+ ID L+ + N F L + LS++ D+DYFK N Sbjct: 277 QELQKANDKLEYLAIIDGLTQVHNRRYFNQYLVQEWRRLMRERQSLSLILCDVDYFKLFN 336 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D++ H GD + ++ + V P V R GGEEFA ++E AA +A +R Sbjct: 337 DHYLHQAGDDCLQKIAQVMQDVVKRPADLVARFGGEEFAIILSNTNELGAARVAQKIRLG 396 Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259 +E +I + S S ++T+S GIA IS+ +I AD+ALY AK GRNR ++ Sbjct: 397 VEQLKIPHALSQCSEYVTLSLGIATTIPTPDISSERLILAADKALYQAKNMGRNRYCLYA 456 >gi|158335003|ref|YP_001516175.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158305244|gb|ABW26861.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017] Length = 630 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 11/164 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 SRID L+ + N +F SL + LSI+ D+D+FKQ ND +GH GD + Sbjct: 466 SRIDGLTSIHNRRSFDESLDKEWRRLRREQQPLSIILCDVDHFKQYNDTYGHQAGDTCLQ 525 Query: 157 FLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGP 214 ++ + P V R GGEEF + A +A +R IE +I + +S Sbjct: 526 EVALAIDKSVKRPADMVARYGGEEFVVLLPNTPLPGATHIAEMIRTAIEVLRIPHKTSSA 585 Query: 215 SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S +T+S G+A ++ + ++ AD ALY AK+ GRNRV+ Sbjct: 586 SDQVTLSLGVATVIPNTQQTYTELLEAADAALYRAKQQGRNRVI 629 >gi|119776418|ref|YP_929158.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119768918|gb|ABM01489.1| diguanylate cyclase [Shewanella amazonensis SB2B] Length = 595 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 1/167 (0%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHP 149 +EL + +++ + D L+GL N F L E+ I+ D+D+FK ND +GH Sbjct: 414 QELMRANMHLAREAVTDPLTGLTNRRPFTERLSMQLEQGGILLMADVDFFKGYNDTYGHV 473 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ L+ +L + + R+GGEEFA A SE E L + L + N I Sbjct: 474 AGDDVLKKLAMELQALLSDSALLARIGGEEFALIAPVMSEAELEALCDRLLTHVRNLAIE 533 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G + + + +AD +LY+AK+ GRN V Sbjct: 534 HRGSHFGIVTLSLGAINLENSSNVRDALSQADASLYLAKQQGRNLAV 580 >gi|307721317|ref|YP_003892457.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306979410|gb|ADN09445.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 307 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 7/176 (3%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYF 139 + ++ +L + S +D L+ + N A + L + +K L ++ DID F Sbjct: 125 ANQVIAQLSAQVKELESSSNLDALTKIFNRRALDTYLKNLCDKKELKHELHVLLLDIDDF 184 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND +GH GDK++ F+++ L V R GGEEF +A+ + Sbjct: 185 KKINDKYGHIAGDKILIFVANMLRKALRDGDKVFRYGGEEFLIVLNRIDVNTCQEIADRI 244 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 K++ ++Q+ G I++TIS G ++ +I RAD+ALY +KKSG+N++ Sbjct: 245 LKLVSSNQL-FYKGEPINVTISIGSTLFYPEDTPEALINRADKALYKSKKSGKNQI 299 >gi|238920210|ref|YP_002933725.1| hypothetical protein NT01EI_2319 [Edwardsiella ictaluri 93-146] gi|238869779|gb|ACR69490.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 351 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 3/156 (1%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 QL++ + GL I L I DID FKQIND +GH GD+V+ ++ Sbjct: 198 QLTQTNNRQGLQQQ---ILRLEHSRSACCIAMIDIDNFKQINDRYGHLCGDRVLTAIAAI 254 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 ++ R GGEEF G + + A +R+ I + + + I + S Sbjct: 255 ASQTLQPRDYMARFGGEEFVILFPGKTLERANARCEQIRQAICATPLYLCHDQQIRASAS 314 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G++ ++ + I RAD ALY AK+ G+NRV C Sbjct: 315 FGLSYFDGRDSLQQAIARADGALYRAKRRGKNRVEC 350 >gi|227112381|ref|ZP_03826037.1| hypothetical protein PcarbP_05422 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 610 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+GL N S+F ++ EK + DID FK IND +GH GD V+ Sbjct: 452 DFLTGLPNRSSFFEQANTFFQHKQQSHQAEKSCLAIIDIDLFKNINDQYGHLAGDAVLKE 511 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L+ + + V R+GGEEF S Q A + +R+ IE + ++ Sbjct: 512 LAMLMRMSLRQEDLVARIGGEEFIILLKDVSYQTAVVTIERIRQAIEQHTLEYDR-QNLR 570 Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 TISAGIA R + I AD+ LY AK+ GRN Sbjct: 571 FTISAGIAAYRTDLASVEDWIQLADENLYAAKRQGRN 607 >gi|206603322|gb|EDZ39802.1| Diguanylate cyclase [Leptospirillum sp. Group II '5-way CG'] Length = 368 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 84/164 (51%), Gaps = 17/164 (10%) Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVF--FDIDYFKQINDNFGHPVGD---KVIAFLSD 160 +D L+G LN F +GS + L IV FD+D+FKQ+ND GH GD K IA L + Sbjct: 203 LDPLTGTLNRRGFQKRIGS-SVGLDIVLLIFDLDHFKQLNDRQGHHQGDLVLKRIAGLVN 261 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-------G 213 L+ G+ R GG+EF + +E +A ++R IE + +SS G Sbjct: 262 GLLA--GSNAVFSRWGGDEFLVLFSRKNLEEIVAVAEEIRTRIEKEGLGVSSETEPSDQG 319 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +I I +SAG + +E ADQALY+AKK GRNR Sbjct: 320 MTISIGLSAGHLD--SEEHFDRFYNLADQALYLAKKEGRNRTRA 361 >gi|167590007|ref|ZP_02382395.1| diguanylate cyclase [Burkholderia ubonensis Bu] Length = 518 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 94/209 (44%), Gaps = 17/209 (8%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ-----LSRIDCLSGLLNHSA 117 Y + ++ I S + L LG++ S+L ++ + ++ L+R D L+GL N Sbjct: 298 YAAWYDRAIPIGSAMVLLALGFVGLSLLLDVQLRRRHRAEAELRALARTDGLTGLDNRRM 357 Query: 118 FISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 +L LS++F D+DYFK+ ND GH GD +A + L P Sbjct: 358 LDLTLEREWRRAARSQHALSLLFVDVDYFKRYNDTQGHQAGDDALAAVGRCLAGCLRRPA 417 Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 + R GGEEF G AA +A +R I I + +T S G+ C Sbjct: 418 DYAARYGGEEFVVILPGVDASGAAAVAETIRASIHELGIRHDASEFGRLTASIGVTT-CF 476 Query: 230 KE---PISTIIYRADQALYVAKKSGRNRV 255 E + + RAD AL+ AK+ GRN+V Sbjct: 477 PEWDGSVHAALKRADDALFRAKERGRNQV 505 >gi|170736935|ref|YP_001778195.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] gi|169819123|gb|ACA93705.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] Length = 521 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 19/207 (9%) Query: 68 NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 + ++ I S + L +G++ S+L ++ + + L+R D L+GL N +L Sbjct: 303 DRAIPIGSAMVLLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174 + LS++F D+DYFK ND GH GD +A + + P + R Sbjct: 363 AREWRRAARSQHALSLLFIDVDYFKHYNDTQGHQAGDDALAAVGHCIAGCLRRPADYAAR 422 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHK 230 GGEEF A +A +R I + I +G +T+S G+ ER Sbjct: 423 YGGEEFVVVLPDIDTDGAVTIAETIRTGILDLGIRHDAGTVGRLTVSIGVTTSYPER--D 480 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257 + I + AD+ALY AK+ GRNR+V Sbjct: 481 DNIQAALKLADEALYRAKEGGRNRIVV 507 >gi|146307752|ref|YP_001188217.1| diguanylate cyclase [Pseudomonas mendocina ymp] gi|145575953|gb|ABP85485.1| periplasmic/7TM domain sensor diguanylate cyclase [Pseudomonas mendocina ymp] Length = 638 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 10/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R+++L+R D L+GL N L + ++I+ D+D+FKQ+ND +GH G Sbjct: 463 RLAELNRRDGLTGLFNRQTLSEELTRACARAERGKQSVAILMLDLDHFKQVNDRYGHLAG 522 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + + ++ + + R GGEEF A +S A LA LR + Sbjct: 523 DACLRHAAQRIQQRLRSSDLLARFGGEEFVALLDNTSLDGALDLAEQLRDDLARHPCPYQ 582 Query: 212 SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCF 258 SI +++S G+ +P + AD+ALY AK GRN+VV + Sbjct: 583 QH-SIPLSLSIGLHAGVPHDPSCGEHWLDLADRALYRAKAGGRNQVVSY 630 >gi|56413372|ref|YP_150447.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362295|ref|YP_002141932.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127629|gb|AAV77135.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093772|emb|CAR59246.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 660 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 98/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 216 AGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+SGR + Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKESGRGQFC 390 Query: 257 CFS 259 FS Sbjct: 391 VFS 393 >gi|107027525|ref|YP_625036.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] gi|116693763|ref|YP_839296.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] gi|105896899|gb|ABF80063.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] gi|116651763|gb|ABK12403.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] Length = 521 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 19/207 (9%) Query: 68 NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 + ++ I S + L +G++ S+L ++ + + L+R D L+GL N +L Sbjct: 303 DRAIPIGSAMVLLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174 + LS++F D+DYFK ND GH GD +A + + P + R Sbjct: 363 AREWRRAARSQHALSLLFIDVDYFKHYNDTQGHQAGDDALAAVGHCIAGCLRRPADYAAR 422 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA----ERCHK 230 GGEEF A +A +R I + I +G +T+S G+ ER Sbjct: 423 YGGEEFVVVLPDIDTDGAVTIAETIRTGILDLGIRHDAGTVGRLTVSIGVTTSYPER--D 480 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257 + I + AD+ALY AK+ GRNR+V Sbjct: 481 DNIQAALKLADEALYRAKEGGRNRIVV 507 >gi|188577960|ref|YP_001914889.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522412|gb|ACD60357.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] Length = 494 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 16/200 (8%) Query: 71 LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125 +V+ ++ +LLLG ++ L+ + + ++S + +D L+G+ N AF L Sbjct: 294 IVVAALGCALLLGVGIWLDLQ-LRRMHRNEAQLSTEAWVDALTGIANRRAFDDRLSRALQ 352 Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEE 179 LS++ D+D+FK ND +GH GD + ++ + V R GGEE Sbjct: 353 DAIRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEE 412 Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235 F + A LA+ +R + E +++SS S H+T+S G+A + P+S Sbjct: 413 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNA 472 Query: 236 IIYRADQALYVAKKSGRNRV 255 I++ AD ALY AK+ GRNR Sbjct: 473 IVHDADSALYRAKQKGRNRT 492 >gi|126735430|ref|ZP_01751176.1| GGDEF domain protein [Roseobacter sp. CCS2] gi|126715985|gb|EBA12850.1| GGDEF domain protein [Roseobacter sp. CCS2] Length = 260 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 115/258 (44%), Gaps = 31/258 (12%) Query: 4 SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63 +K+FLS W F+ T SI S+ + +F N + L P Sbjct: 15 QMKEFLSSWRG------VFAAATLTTLASICVSVLMVYFLFQGNDLHAALRLAP------ 62 Query: 64 ILVENLSLVIISITISLLLGY-ISGSILKELFISYNRISQLSRI---DCLSGLLNHSAFI 119 +IS+ I+ + + I + + +S+ +L RI D L+ + F Sbjct: 63 ---------VISVVIAFPVTFFIWSQVRSNIQLSF----ELQRIVDRDRLTDVATRDFFF 109 Query: 120 SSL-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 + + G N + DID+FK +ND FGH GDKVI+ +++ L V R GGE Sbjct: 110 ARMRGDPNAYGISLMVDIDFFKVVNDTFGHIAGDKVISRVAEILYENTRPDDIVCRFGGE 169 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY 238 EF + + +A +R+ I I G ++ +T+S G + + + + I Sbjct: 170 EFVIFLHQQDKADGFAIAERMREAIAEEVIEF-DGHNLSVTVSIGGSLKERLKDVEFAIQ 228 Query: 239 RADQALYVAKKSGRNRVV 256 +ADQALY AK +GRNR V Sbjct: 229 QADQALYQAKANGRNRTV 246 >gi|15891183|ref|NP_356855.1| GGDEF family protein [Agrobacterium tumefaciens str. C58] gi|15159539|gb|AAK89640.1| GGDEF family protein [Agrobacterium tumefaciens str. C58] Length = 302 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 17/211 (8%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ E + + L + S L GY + ++L + + S+ D L+G N Sbjct: 99 FWMTETVQQDGWMLCVASDVTELRQGYRTLRQDRDLAV------RASQTDELTGTANRRF 152 Query: 118 FISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKVIA-FLSDQLVVVFGT 168 + L E++S + DID+FKQIND FGH GD V+ F+ V+ Sbjct: 153 VFAKLALQVEQVSKGLEAPFCLCTLDIDFFKQINDRFGHKCGDAVLRDFVGIAHSVIRRV 212 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 F GR+GGEEF SS E + L + + S+ +S P + SAG+ Sbjct: 213 DCF-GRIGGEEFMLILPRSSIAEGREIVERLLQKVRLSR-PLSEFPDFSYSCSAGMTVFR 270 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 E + RADQALY AK+ GR+R++ + Sbjct: 271 MMENADDVFMRADQALYAAKEKGRDRLLAVT 301 >gi|82701771|ref|YP_411337.1| diguanylate cyclase [Nitrosospira multiformis ATCC 25196] gi|82409836|gb|ABB73945.1| diguanylate cyclase (GGDEF domain) [Nitrosospira multiformis ATCC 25196] Length = 569 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 92 ELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 E NR + +LS D L+GL N + + L +++ DID+FK +N Sbjct: 394 EAMQQQNRMLEKLSITDSLTGLYNRNKLDAILADQLARFRRTQRPFALLMLDIDHFKTLN 453 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GDK++A ++ L+ + + R GG+EF + + +A A +R + Sbjct: 454 DTYGHITGDKILAKVAQILLQSIRSIDYAARYGGDEFIIILVETYIDQAVKTAERIRTHV 513 Query: 204 ENSQINISSGPS-IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 E ++ +G S I IT+S G E R + + RAD ALY AK++GRN+ Sbjct: 514 E--KLTYPAGKSTISITVSIGAVECRSDDSTTTAVFSRADNALYEAKRAGRNQA 565 >gi|148253697|ref|YP_001238282.1| PAS/PAC sensor-containing diguanylate cyclase [Bradyrhizobium sp. BTAi1] gi|146405870|gb|ABQ34376.1| diguanylate cyclase with PAS/PAC sensor [Bradyrhizobium sp. BTAi1] Length = 636 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 24/182 (13%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPV 150 R+ L+ D L+GL N F L +Y +K L+++ DID+FK ND++GHP Sbjct: 447 GRLETLAIEDGLTGLANRRRFDERLLEEWGRAYRDKTSLALLMIDIDHFKAFNDSYGHPA 506 Query: 151 GDK----VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD+ V L+D+ + R GGEEFA + A L +R+ + + Sbjct: 507 GDECLHTVAGILADEAQR---SSDLAARYGGEEFAILLPNTDAAGCARLGERIRRALHEA 563 Query: 207 QI-NISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +I + +GP I +T S G A ER +++I AD+ALY AK GR+RVV Sbjct: 564 RITHDHNGPGI-VTASIGGAVCRPGFERSAGP--ASLIEAADRALYAAKDGGRDRVVMAG 620 Query: 260 DI 261 +I Sbjct: 621 EI 622 >gi|329894074|ref|ZP_08270059.1| two-component response regulator [gamma proteobacterium IMCC3088] gi|328923246|gb|EGG30566.1| two-component response regulator [gamma proteobacterium IMCC3088] Length = 414 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 90/175 (51%), Gaps = 17/175 (9%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 S ++++QL+ D L+GL N F S E LSI+ D+D FK ND+ GH Sbjct: 243 SNDKLAQLALTDFLTGLKNVRFFDSEYKKLWENSTTSGTPLSIILLDVDCFKLYNDSLGH 302 Query: 149 PVGDKVIAFLSDQLVVVFGTPMF----VGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GD+ + + + V+ P F V R+GGEEFA ++EQ A A + I+E Sbjct: 303 LAGDECLKRIGE---VLLTHPGFHRGLVARIGGEEFAIVMENNAEQ-ALEEAERIVAIVE 358 Query: 205 NSQI-NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVC 257 + I + SS +T++AG+A R + ++ RAD ALY AK GRNR + Sbjct: 359 HLSIPHPSSLVGASVTVTAGVATRSSLDSSREKLLSRADYALYHAKSLGRNRAMA 413 >gi|323492479|ref|ZP_08097627.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] gi|323313266|gb|EGA66382.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] Length = 509 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 17/212 (8%) Query: 59 YGLEYILVENLSLVIISI-----TISLLLGYISGSILKE----LFISYNRISQLSRI--- 106 + L+ + N S+V+ +I TI+ LL YI ++++ + R +L + Sbjct: 296 FKLDRQVTHNDSVVLAAIFVSGLTIACLLSYIVLLLVRDKEHLAVLLDERTEELQFLVMH 355 Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+G+ N AF + L N+ S++ FD+D FK IND+FGH GD+++ ++ + Sbjct: 356 DSLTGIYNRRAFSQYLRELVRTNQGFSLITFDVDRFKLINDHFGHVAGDEMLVCVAQIVQ 415 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 R+GG+EF + + +Q+ N +R + ++ SG I T+S G Sbjct: 416 RHLADEDLFVRMGGDEFCILSTVTDKQQLGEYLNAIRCAVAEL-VHTHSGQRIRCTLSIG 474 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 A R E I+ +D LY +K++GRNRV Sbjct: 475 AAIR-RDEGEEDIMQASDAQLYKSKQAGRNRV 505 >gi|163853382|ref|YP_001641425.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163664987|gb|ABY32354.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 369 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 13/170 (7%) Query: 107 DCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 D L+GL N F SL + S++ DID FK+ ND +GH GD+V+ Sbjct: 195 DALTGLGNRKNFEESLRKSVDRQSASAQQGKPASLIVIDIDSFKRFNDLYGHLTGDQVLR 254 Query: 157 FLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGP 214 ++ + G + R GGEEF + EA +A +R + + + S+G Sbjct: 255 LVAIVMREHIGEKNATLARFGGEEFGIVLPETDRVEARAIAERVRIGVTGRELVKRSTGE 314 Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S+ +T+S G+A + + +++ RAD L+ AK++GRNR + +++EN Sbjct: 315 SLGKVTVSLGVATQREDDNAVSLLERADACLFAAKRAGRNRTLDETEVEN 364 >gi|307721244|ref|YP_003892384.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306979337|gb|ADN09372.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 520 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 9/160 (5%) Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++G N A S N KL+++ DID FK IND +GH +GD I + Sbjct: 362 DYMTGAYNRRYFFEVARALFSRAKRKNTKLAVIMIDIDNFKAINDTYGHDIGDLAIIEVR 421 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF A S+++ L +RK EN++I S +I T Sbjct: 422 KVLERNLRKYDLFARFGGEEFCALLDDISKEDVEKLFEKIRKDFENNRI-TSGDMTIGYT 480 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S GIA + I AD+ALY +K++G+N+V + Sbjct: 481 VSFGIAYGMM-SSLEKFIKVADEALYTSKQNGKNQVTIYE 519 >gi|262369497|ref|ZP_06062825.1| diguanylate cyclase [Acinetobacter johnsonii SH046] gi|262315565|gb|EEY96604.1| diguanylate cyclase [Acinetobacter johnsonii SH046] Length = 458 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 7/154 (4%) Query: 107 DCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ LLN S +S ++ K LS++ D DYFK+IND +GH GD + F++ Sbjct: 294 DSLTQLLNRRYLSTIVSREINFARKNDAALSLLAIDADYFKRINDKYGHTAGDLALRFIA 353 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L+ V + R+GGEEF + S A +A +R I+ + I + G S T Sbjct: 354 EVLLDVAKGSDYAFRVGGEEFLLLLVDSDRTRALQVAETIRMRIQETPIRTAHGQSFSFT 413 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +S G + AD ALY AK GRN Sbjct: 414 VSIGCTVYNGHPDYQRFLDTADSALYAAKNKGRN 447 >gi|260467212|ref|ZP_05813388.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum WSM2075] gi|259028987|gb|EEW30287.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum WSM2075] Length = 688 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 84/168 (50%), Gaps = 20/168 (11%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVF----FDIDYFKQINDNFGHPVGDK- 153 +LSR D L+GL N A L Y +KL F D+D+FK+ ND +GH GD+ Sbjct: 251 RLSRTDPLTGLENRRAIDEKLRDYWNDWQKLGTGFVAILIDVDFFKKFNDCYGHQEGDRC 310 Query: 154 ---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 V LSD + G+ +GR GGEEF A + + A LA + + +EN I Sbjct: 311 LIQVANALSDMIKHYNGS---IGRYGGEEFIVLARMEKKDQVADLAEAICRTVENLAIAH 367 Query: 210 --ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 G SI +T S G A + + II+ AD+ALY+AK GRN Sbjct: 368 ELRRDGISI-VTASVGAAFTRKQTGAKLEKIIHEADRALYLAKAGGRN 414 >gi|158426164|ref|YP_001527456.1| putative sensory box/GGDEF family protein [Azorhizobium caulinodans ORS 571] gi|158333053|dbj|BAF90538.1| putative sensory box/GGDEF family protein [Azorhizobium caulinodans ORS 571] Length = 772 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 14/180 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDN 145 + + ++ +++ Q + D L+GL N +AF SL ++N + ++ D+D K +ND Sbjct: 318 ITDRLMAEDKVRQAALHDALTGLSNRAAFQLSLEAACAAFN-SVCLLLVDLDSLKDVNDT 376 Query: 146 FGHPVGDKVIA----FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +GH GD ++ L Q+ G FV RLGG+EF G EA +A L Sbjct: 377 YGHDAGDALLVETARRLGQQVEERVGGRGFVARLGGDEFVVLLAGVRLPEAIDMAETL-- 434 Query: 202 IIENSQINIS-SGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFS 259 I + I G S+ S G+AER + S ++ AD ALY AK GRNR V ++ Sbjct: 435 -IAGLRAPIWYGGRSLIARASVGVAERMGETQTSGELMKNADLALYAAKSQGRNRAVVYA 493 >gi|238787313|ref|ZP_04631112.1| hypothetical protein yfred0001_33000 [Yersinia frederiksenii ATCC 33641] gi|238724575|gb|EEQ16216.1| hypothetical protein yfred0001_33000 [Yersinia frederiksenii ATCC 33641] Length = 414 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 6/134 (4%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 Y + S++ D+D+FK IND GH GD+V+ L+ L + V R GGEEF Sbjct: 285 YGQNFSLILLDVDHFKSINDQLGHHKGDEVLILLARTLESIIRECDIVFRWGGEEFVILL 344 Query: 185 LGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 + A +A +R+ I+ Q N+ +T+S G+A+ E ++ R D+A Sbjct: 345 PLTDLNGALQVAESIRETIQMICQPNLP-----QLTVSLGVAQHQVGEDTDSLFKRMDEA 399 Query: 244 LYVAKKSGRNRVVC 257 LY AK SGRNRV+ Sbjct: 400 LYRAKASGRNRVLA 413 >gi|325497696|gb|EGC95555.1| diguanylate cyclase; GGDEF domain; PLP-dependent transferase [Escherichia fergusonii ECD227] Length = 564 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSA------FISS 121 L+L+ T L++ +I ++ +F+ + + + D L+ L N A F++ Sbjct: 356 LTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWHDTLTRLYNRGALFEKARFLAQ 415 Query: 122 LGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 N++ S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF Sbjct: 416 ECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEEF 475 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIY 238 ++ +A +A +R + +I I+ ++ I+ S G++ E + Sbjct: 476 CIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQS 535 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD LY+AK++GRNR VC SD Sbjct: 536 LADGRLYLAKQAGRNR-VCASD 556 >gi|294678156|ref|YP_003578771.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB 1003] gi|294476976|gb|ADE86364.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB 1003] Length = 466 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 10/168 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ +D L+GL N + + E+ +++ DID FK +ND +GH GD+V Sbjct: 295 RLALVDPLTGLYNRRYAMPHVARLAERSRHSGRSFAVMVLDIDRFKSVNDTYGHAAGDRV 354 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ +L + V R+GGEEF A +S + A A L +++E + + G Sbjct: 355 LIEVARRLTLNLRQVDLVARVGGEEFLIAMPETSLEAARATAERLCRVMEETPFELHDGH 414 Query: 215 SIHITIS---AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ IT+S A + +I +AD AL +K GRN+V F Sbjct: 415 ALRITVSIGLALGGGHGGTGTVEQVINQADHALMSSKAEGRNQVKIFK 462 >gi|258625517|ref|ZP_05720409.1| GGDEF family protein [Vibrio mimicus VM603] gi|258582223|gb|EEW07080.1| GGDEF family protein [Vibrio mimicus VM603] Length = 696 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 13/178 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144 +EL +++Q +R D L+ L N A+ + Y + +++ D+D FK +ND Sbjct: 521 QELQNVNRKLAQAARTDSLTQLYNRRAYEEFIQEYWQTYQAQQPITLAVMDLDGFKLVND 580 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH VGD+++ +D L +F P + RLGG+EFA G +Q L + I Sbjct: 581 QLGHQVGDELLRLFADLLRDIFDRPTDRLTRLGGDEFAVIMSGFEQQSHLNLLAQV--IT 638 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFS 259 E SQ S H+++S G A ++T + ADQALY AK +G+ ++V FS Sbjct: 639 EFSQRTAQSFN--HLSVSIGAASIIPTPAMTTDSFFSLADQALYQAKANGKQQLVVFS 694 >gi|238892462|ref|YP_002917196.1| hypothetical protein KP1_0227 [Klebsiella pneumoniae NTUH-K2044] gi|238544778|dbj|BAH61129.1| hypothetical protein KP1_0227 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 510 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 21/175 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 K+ +SY R + ID L+G N AF I++L + ++ ++ DID FK IND +G Sbjct: 346 KQRELSYVRQAT---IDALTGCKNRRAFDSDIAALMNDHQPFALALVDIDNFKSINDTWG 402 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 H GD V+ ++ + + V P+ + R GGEEFA A ++ R ++E Sbjct: 403 HLNGDIVLRNVAREGLQVL-QPLEISLYRYGGEEFAVVF-------PAEHIDNARTLLET 454 Query: 206 SQINISSG----PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +IN+ + +T SAG+ E + EP+ ++ D+ALY AK+ G+NR++ Sbjct: 455 WRINVERRTWREDGLTVTFSAGLGE-WNMEPLDKLVVSVDEALYKAKQQGKNRIL 508 >gi|298530359|ref|ZP_07017761.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira thiodismutans ASO3-1] gi|298509733|gb|EFI33637.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira thiodismutans ASO3-1] Length = 915 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 11/160 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL+N S F + + LSI+ DID FKQ ND +GH GD+ + ++ Sbjct: 753 DHLTGLMNRSRFDQLMEEEWRRAKRGGHCLSILMLDIDNFKQFNDFYGHIQGDRCLQRIA 812 Query: 160 DQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217 L + + R GGEEF A + Q A ++A +R +EN + N S Sbjct: 813 GILSACLMRAGDVLARYGGEEFIALLPDTPLQSAVVVAEKMRMSVENLGMPNTGSQAGPF 872 Query: 218 ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 +++SAG+A C +S +I++AD LY AK GRN V Sbjct: 873 VSVSAGVASSCPFPGMSRQGLIHQADMMLYKAKSLGRNTV 912 >gi|168215933|ref|ZP_02641558.1| GGDEF domain protein [Clostridium perfringens NCTC 8239] gi|182381581|gb|EDT79060.1| GGDEF domain protein [Clostridium perfringens NCTC 8239] Length = 545 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%) Query: 99 RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R S+L + D L + N ++I++L + +S + D+DYFK NDN+GH GD + Sbjct: 372 RDSKLDSLKDGLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFI 431 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 + ++ L V R GGEEF G+S+ + A +++ ++N I S Sbjct: 432 LKSIASVLEKNSRKEDIVARYGGEEFCVLLKGASKYSSINYAKRIKENLDNLNIKHKYSK 491 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S H+T S GI K + I +D+ALY++K GRN D Sbjct: 492 TSDHVTFSIGIYTTYTKNDLKNAIKFSDKALYISKTRGRNTYTYLED 538 >gi|118591951|ref|ZP_01549346.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Stappia aggregata IAM 12614] gi|118435594|gb|EAV42240.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Stappia aggregata IAM 12614] Length = 620 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 23/223 (10%) Query: 50 LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCL 109 LF+ LT F +E +E+ +++I ++ + ++ KEL + R+ Q + D L Sbjct: 139 LFWNQLT-FAVVEGKTLEDTKIILICRDVTSQVEHV-----KELENARTRLKQQAEHDDL 192 Query: 110 SGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 +G+ N S S L + ++ I+ FD+D+FK IND+ GH GD V+ ++ + Sbjct: 193 TGVANRSKLNSYLMERIAEGVDGSARIGIIHFDLDHFKDINDSHGHSAGDTVLRHVAMVM 252 Query: 163 VVVFGTPMFVGRLGGEEFAAA---ALGSSEQE--AAILANDLRKIIENSQINISSGPSIH 217 V G V R+GG+EF A G E E + L K + + + S+ Sbjct: 253 SRVLGNRGLVARIGGDEFVAVVSDPQGPEEMEDLGTRILEGLAKPVRVDRHEVRVAGSVG 312 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ S +I AD ALY AK+SGR+++ ++D Sbjct: 313 LVLADAATASA-----SELINCADIALYAAKRSGRSQISWYTD 350 >gi|320101645|ref|YP_004177236.1| diguanylate cyclase [Isosphaera pallida ATCC 43644] gi|319748927|gb|ADV60687.1| diguanylate cyclase [Isosphaera pallida ATCC 43644] Length = 428 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 13/163 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F+ + + E+ L+++ D+D+FK +ND GH VGD+V+ ++ Sbjct: 174 DPLTGLYNRLYFLEEIYHWVERHPRRSSGLALLLIDLDHFKNVNDEHGHAVGDRVLRLVA 233 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIH- 217 + L G + R GGEEF AA S A LAN +R ++ G S+ Sbjct: 234 EVLERALGEEALLSRFGGEEFIAAMEVSDLDAACALANRVREEVARRPYRPFGYGGSVQL 293 Query: 218 -ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S G+A R +I AD L AK+ GRNRV+ Sbjct: 294 SLTLSVGVAYLPPRGDPVEPDQMIRAADLCLGQAKRRGRNRVI 336 >gi|313500362|gb|ADR61728.1| Diguanylate cyclase [Pseudomonas putida BIRD-1] Length = 493 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ +D L+GL N +F + + + + D+D+FK +NDN GH GD+V+ Sbjct: 328 LATLDSLTGLHNRRSFDLLAAQALREARRDSSPMVALLIDLDHFKALNDNHGHLAGDEVL 387 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L + R GGEEF + ++A +A +R+ E + + P Sbjct: 388 RQFANVLQGSLRQSDILCRWGGEEFIVLLREAEGRQAIEVAEKIRRRTEQLTFSYDNQP- 446 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T S G++ + + ++ RAD+ALY AK++GRNRV Sbjct: 447 LRLTTSIGLSSLQPGDTLHALLTRADRALYRAKQAGRNRV 486 >gi|307945245|ref|ZP_07660581.1| diguanylate cyclase [Roseibium sp. TrichSKD4] gi|307771118|gb|EFO30343.1| diguanylate cyclase [Roseibium sp. TrichSKD4] Length = 406 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 14/185 (7%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDID 137 + +LLGY+ + KE + R+ S+ID L+GLLN A + + I+ D+D Sbjct: 216 VVILLGYV---MEKE----HKRVFNRSQIDGLTGLLNRRAIEELIDISSNPYGIILLDLD 268 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK++ND GH GD+V+ +++ L V R GEEF A +S E A Sbjct: 269 HFKEVNDTHGHAAGDEVLRNVANLLQSSLRKDDHVARWSGEEFVIALRTNSIDELKEAAE 328 Query: 198 DLRKII---ENSQINISSG-PSIHITISAGIAERCHKEPISTI---IYRADQALYVAKKS 250 LR I S IN + I I ++A + H ST+ I +AD ALY AK Sbjct: 329 RLRSRIGALNTSVINEDNDFELIDIKVTASLGCSMHIPKGSTLADAIEKADGALYEAKAR 388 Query: 251 GRNRV 255 GR++V Sbjct: 389 GRDQV 393 >gi|300920287|ref|ZP_07136731.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1] gi|300412696|gb|EFJ96006.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1] Length = 460 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 9/173 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140 ++L+ELF +R +D L+ LLN I+ LSI+ D+D FK Sbjct: 281 TLLRELFEEVSR--HEVGMDVLTKLLNRRFLPTILKREIAHANRAGTPLSILIIDVDKFK 338 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND +GH GD+++ +S + +V R GG+EF +++ + +A +R Sbjct: 339 EINDTWGHNTGDEILRQVSQAFYDNVRSSDYVFRYGGDEFIIVLTEATQTDTLRIAERIR 398 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +E ++I +G I +++S G A +I AD+ALY AK+ GRN Sbjct: 399 SRVEKTKIKSPAGDFIPLSLSIGAAMFNGHPDYERLIQIADEALYTAKRRGRN 451 >gi|260556102|ref|ZP_05828321.1| ggdef domain/eal domain-containing protein [Acinetobacter baumannii ATCC 19606] gi|260410157|gb|EEX03456.1| ggdef domain/eal domain-containing protein [Acinetobacter baumannii ATCC 19606] Length = 684 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL + ++ LS D L+ L N +S ++K++ ++ D+D FK +ND Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSDHRYKDQKIAFLYIDLDRFKSVND 305 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH GD+++ ++++L + R+GG+EF A + +EA LA + +I+ Sbjct: 306 AFGHHFGDQLLIQMANRLHWQLNEKCKLLRIGGDEFLLIAENTDTEEAMQLAEKVLHLIQ 365 Query: 205 NS-QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S QI SG I+I+ S GIA H + + ++ AD A+ ++K+ GRN FS Sbjct: 366 DSYQI---SGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFS 419 >gi|56460650|ref|YP_155931.1| signal protein [Idiomarina loihiensis L2TR] gi|56179660|gb|AAV82382.1| Signaling protein with a PAS and GGDEF domains [Idiomarina loihiensis L2TR] Length = 300 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 22/167 (13%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G++N AF I+ L ++ ++ F D+D FK+IND GH GD V+ ++ Sbjct: 142 DHLTGIMNRRAFTAQLQDEINQLEAHGTPFAVSFIDLDDFKEINDEHGHHFGDLVLQKIA 201 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG---PSI 216 D + + +V R+GG+EFA I A D R ++ + + SG + Sbjct: 202 DLIRLHSRHTDYVARIGGDEFATI-------HPMISAEDARLMMHRLRCQLVSGIGHAEL 254 Query: 217 HITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259 +T+S G+ + C K I I+ RAD+A+Y AK G+N VV S Sbjct: 255 PVTLSIGLCQ-CDKPSEHYTIEGIMARADKAMYQAKSEGKNAVVLTS 300 >gi|77458403|ref|YP_347908.1| diguanylate cyclase with GAF sensor [Pseudomonas fluorescens Pf0-1] gi|77382406|gb|ABA73919.1| putative GGDEF/GAF domain sensory box protein [Pseudomonas fluorescens Pf0-1] Length = 321 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 12/177 (6%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVF 133 LL ++G +EL Q++ +D L+ L N F + + + +++F Sbjct: 146 LLRDLAGMAEQELMAV-----QMASMDELTLLSNRRGFKMLAQHALDACARLEKPATLLF 200 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 FD++ FKQIND +GH GD + +D L + F VGRLGG+EF A GSS E Sbjct: 201 FDLNDFKQINDLYGHAEGDSALKTFADVLRIAFRESDVVGRLGGDEFVALLTGSSHVETT 260 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 + L++I+E + G +I ++ E + ++ AD A+Y K++ Sbjct: 261 AIMARLKEILEERNATLHRGYAIRFSVGQIEYNPQRHESVDKLLADADAAMYEHKQA 317 >gi|95928348|ref|ZP_01311096.1| ammonium transporter [Desulfuromonas acetoxidans DSM 684] gi|95135619|gb|EAT17270.1| ammonium transporter [Desulfuromonas acetoxidans DSM 684] Length = 606 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 13/134 (9%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S++ DID+FK IND +GH VGD V+ L++ + + R GGEEF Sbjct: 480 MSVIIIDIDHFKTINDTYGHDVGDVVLKELAELIQQLIRNQDLFARWGGEEFILLC---- 535 Query: 189 EQEAAILANDLRKIIENSQINISSGPSI---HITISAGI--AERCHKEPISTIIYRADQA 243 E +IL ++ R+I E + +I++ P H+T S G+ ER +P + AD+A Sbjct: 536 --ETSIL-DEARRIAEKLRSSIAAYPFTTVNHLTCSFGVCSPER-PDQPFDALFKDADEA 591 Query: 244 LYVAKKSGRNRVVC 257 LY AK+ GRNRV C Sbjct: 592 LYRAKELGRNRVCC 605 >gi|332308245|ref|YP_004436096.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175574|gb|AEE24828.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 367 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 17/197 (8%) Query: 71 LVIISITISLLL-GYISGSILKELFISYNRISQLSR---IDCLSGLLNHSAFISSL---- 122 L+I S+ + LLL + +L+E ++ I QL R D L+ L N F + L Sbjct: 167 LIIASVAVLLLLINHACQRVLRE---NFQLIKQLYRDTIRDSLTQLYNKRFFDTQLDNLL 223 Query: 123 ---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGE 178 G + +S+V D+D+FK+IND GH VGD V+ ++ L P G R+GG+ Sbjct: 224 LLMGREHIPVSLVLVDVDHFKRINDKHGHRVGDHVLGCIATILQSYCRRPNDYGFRIGGD 283 Query: 179 EFAAAALGSSEQEAAILANDLR-KIIENSQINIS-SGPSIHITISAGIAERCHKEPISTI 236 EFA G S+++ + ++R K++E S + S + S ++I A + E+ + + Sbjct: 284 EFAILFYGISKEKLISVCEEMRSKVMEISLDDDSNTAESPQVSIGACVTEKTSHYTSAEL 343 Query: 237 IYRADQALYVAKKSGRN 253 AD ALY AK GRN Sbjct: 344 FEAADNALYKAKAQGRN 360 >gi|320332739|ref|YP_004169450.1| GAF sensor-containing diguanylate cyclase [Deinococcus maricopensis DSM 21211] gi|319754028|gb|ADV65785.1| diguanylate cyclase with GAF sensor [Deinococcus maricopensis DSM 21211] Length = 607 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 8/159 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + + LSI+ D+D+FK+ ND FGH GD V+ L+ Sbjct: 446 DPLTGLFNRRYLDETFEREVRRAERHRRSLSILMLDVDHFKRFNDTFGHEAGDAVLVALA 505 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + F V R GGEEFA +S Q+ A LR + + I+ Sbjct: 506 QLMTRHFRREDIVCRYGGEEFAVLLTDASFQDGLNRAEALRAATAELRPTLQGRALGGIS 565 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IS G++ H + ++ AD ALY AK++GRNRV+ Sbjct: 566 ISVGVSGFPEHARDSAELLRLADSALYEAKQAGRNRVMA 604 >gi|299530671|ref|ZP_07044086.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298721187|gb|EFI62129.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 312 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 11/183 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFK 140 ++ EL ++ +++++ +D L+GL+N A I++ + L+++ D+D+FK Sbjct: 119 TVSAELHLANQKLNEMVELDALTGLVNRRGLDRMLHAEIAAARRESRPLTLMLCDLDHFK 178 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND +GH GD+ + + L V P R GGEEFA + + A L Sbjct: 179 HFNDTYGHVQGDECLKQVGRLLREVCVRPRDIAARYGGEEFAMILPNTPRSGSMTFARAL 238 Query: 200 RKIIENSQINIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 ++++ +I + I +T+S GI E S +++ RAD+ALY AK GRNR Sbjct: 239 GQMLKFLKIRPPGAAEDIPLTLSGGITTCIPDEHTSAESMLMRADEALYAAKSQGRNRFF 298 Query: 257 CFS 259 F Sbjct: 299 SFE 301 >gi|258623193|ref|ZP_05718202.1| GGDEF family protein [Vibrio mimicus VM573] gi|258584491|gb|EEW09231.1| GGDEF family protein [Vibrio mimicus VM573] Length = 696 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 13/178 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144 +EL +++Q +R D L+ L N A+ + Y + +++ D+D FK +ND Sbjct: 521 QELQNVNRKLAQAARTDSLTQLYNRRAYEEFIQEYWQTYQAQQPITLAVMDLDGFKLVND 580 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH VGD+++ +D L +F P + RLGG+EFA G +Q L + I Sbjct: 581 QLGHQVGDELLRLFADLLRDIFDRPTDRLTRLGGDEFAVIMSGFEQQSHLNLLAQV--IT 638 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFS 259 E SQ S H+++S G A ++T + ADQALY AK +G+ ++V FS Sbjct: 639 EFSQRTAQSFN--HLSVSIGAASIIPTPAMTTDSFFSLADQALYQAKANGKQQLVVFS 694 >gi|254485748|ref|ZP_05098953.1| diguanylate cyclase response regulator [Roseobacter sp. GAI101] gi|214042617|gb|EEB83255.1| diguanylate cyclase response regulator [Roseobacter sp. GAI101] Length = 467 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 16/163 (9%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +S L G + +++ D+D+FK+IND FGH GD V+ + Sbjct: 296 DPLTGLYNRRYAMSELARLIENAGKSDTHFAVMLADMDHFKRINDAFGHAAGDSVLVETA 355 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218 +L V R+GGEEF G++ +A +A L + ++ I SS ++ I Sbjct: 356 RRLRSQLRPIDMVARIGGEEFLLVVPGTTALDATQVAERLCRTFRDAPFIIPSSNTAVTI 415 Query: 219 TISAGIAER--------CHKEPISTIIYRADQALYVAKKSGRN 253 TIS G+ + + +I +ADQALY AK GRN Sbjct: 416 TISIGVCMSDSLTLTLPAQDDKAARLIDQADQALYAAKSRGRN 458 >gi|254249563|ref|ZP_04942883.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] gi|124876064|gb|EAY66054.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] Length = 528 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 19/207 (9%) Query: 68 NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 + ++ I S + L +G++ S+L ++ + + L+R D L+GL N +L Sbjct: 310 DRAIPIGSAMVLLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 369 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174 + LS++F D+DYFK ND GH GD +A + + P + R Sbjct: 370 AREWRRAARSQHALSLLFIDVDYFKHYNDTQGHQAGDDALAAVGHCIAGCLRRPADYAAR 429 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI----AERCHK 230 GGEEF A +A +R I + I +G +T+S G+ ER Sbjct: 430 YGGEEFVVVLPDIDTDGAVTIAETIRTGILDLGIRHDAGTVGRLTVSIGVTTSYPER--D 487 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257 + I + AD+ALY AK+ GRNR+V Sbjct: 488 DNIQAALKLADEALYRAKEGGRNRIVV 514 >gi|221068368|ref|ZP_03544473.1| diguanylate cyclase [Comamonas testosteroni KF-1] gi|220713391|gb|EED68759.1| diguanylate cyclase [Comamonas testosteroni KF-1] Length = 616 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 15/209 (7%) Query: 63 YILVENLSLVIISITISLLLGYIS-----GSILKELFISYNRISQLSRIDCLSGLLNHSA 117 Y + +L+I S+ +L + +I G LK + + ++ L+R D L+GL N Sbjct: 401 YAVWRQRALLIASVMGTLTMAFIGLSFAFGVQLKRRMRAESELALLARTDGLTGLNNRRK 460 Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 + S++F DID+FK ND +GH GD V+A ++ + P Sbjct: 461 LDEIIEHEWHRAKRSHSAFSLLFVDIDWFKAYNDTYGHQAGDMVLATVARCIANNIRRPE 520 Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 R GGEEF ++ A++A ++R+ + I + IT+S G A Sbjct: 521 DSAARYGGEEFIVVLPDTTLDGGALIAENIREAVSELAIAHTGSEFGCITVSIGCAAWVP 580 Query: 230 KE--PISTIIYRADQALYVAKKSGRNRVV 256 + + ++ AD+ALY AK +GRN+VV Sbjct: 581 GKDLDVQEVLRSADKALYGAKMTGRNKVV 609 >gi|319936896|ref|ZP_08011307.1| hypothetical protein HMPREF9488_02141 [Coprobacillus sp. 29_1] gi|319807995|gb|EFW04570.1| hypothetical protein HMPREF9488_02141 [Coprobacillus sp. 29_1] Length = 818 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 11/171 (6%) Query: 102 QLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L++ D L+ + N +A F+ +Y +L+ + DID+FK IND +GH GD+V Sbjct: 649 ELAQRDSLTKIYNSAACRDLINKFLEEEKNYKGRLAFIILDIDHFKSINDQYGHYFGDRV 708 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + L+ L V + +GR+GG+EF S + + L +++ + +I Sbjct: 709 LQELAMTLSRVTKSTDILGRVGGDEFIIGLKYPESIEYVEVYCQRLLEVVSH---HICKD 765 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 I +T+S G+A + ADQALY KK+GRN ++ +E + Sbjct: 766 KEIDVTVSLGVAFSRKANTFDDLYQFADQALYQVKKTGRNHYQLYNTLEKD 816 >gi|121594057|ref|YP_985953.1| diguanylate cyclase [Acidovorax sp. JS42] gi|120606137|gb|ABM41877.1| diguanylate cyclase [Acidovorax sp. JS42] Length = 394 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 7/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-SYNEKLS----IVFFDIDYFKQINDNFGHPVGD 152 +++ ++ D ++ LLN +L S+N++ + ++ D+D+FK+IND +GH GD Sbjct: 217 DQLRHIAARDPMTQLLNRRGLTEALQLSFNQRRAEHAHLLVVDVDHFKRINDTYGHHAGD 276 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 V+ +++ L V RLGGEEFA L + A +A LR IE I+I+ Sbjct: 277 TVLCRVAEILQATARRGDLVSRLGGEEFAVICLNTDFPGAMHMAERLRAAIETQTIDIAE 336 Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255 G + T++ G+++ + + +AD ALY K +GRNRV Sbjct: 337 GGHPLQCTVTVGVSQGFADAHALEAALQQADAALYRGKAAGRNRV 381 >gi|126463772|ref|YP_001044885.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029] gi|126105583|gb|ABN78113.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17029] Length = 439 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%) Query: 74 ISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 +++T+ L ++ + + + + R+ + R D L+ LLN F +L Sbjct: 241 VAVTVPPELAAVADAFNDMTRTIVEQEARLREFGRRDALTSLLNRREFDHALEQRAAPWT 300 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAA 183 E +++ DID FK+IND GH VGD V+ ++ +L G P+F R GGEEFA Sbjct: 301 GEPYALLLIDIDRFKRINDTHGHAVGDAVLRAVALRLAASARQGLPLF--RYGGEEFALL 358 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 + EA A LR+ + + + G I +TIS GIA + + + AD+A Sbjct: 359 LDRAGAAEALSEAERLRRAVAEEPVGLEDGTRIAVTISVGIALGARGQAGAELFAAADRA 418 Query: 244 LYVAKKSGRN 253 LY AK +GRN Sbjct: 419 LYAAKDAGRN 428 >gi|116049036|ref|YP_792162.1| hypothetical protein PA14_50060 [Pseudomonas aeruginosa UCBPP-PA14] gi|115584257|gb|ABJ10272.1| hypothetical protein PA14_50060 [Pseudomonas aeruginosa UCBPP-PA14] Length = 398 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F ++ + + LS++ D+D+FK IND +GHP GD+VI + Sbjct: 229 DPLTGLFNRREFDQLVLMELARIARQPQPLSLLMVDLDHFKYINDRYGHPFGDEVIRHAA 288 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L + V RLGGEEF ++EQ+A LA LR+ +E + + G + +T Sbjct: 289 NLLRGNTRSSDSVARLGGEEFLLLLPDTAEQQARSLAEKLRERLEGTPLATQDG-VLCLT 347 Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A + + + ADQALY AK SGRNRV Sbjct: 348 ASFGVASLDGGGQASYEQLYSAADQALYRAKSSGRNRV 385 >gi|329896145|ref|ZP_08271358.1| two-component response regulator protein [gamma proteobacterium IMCC3088] gi|328921964|gb|EGG29329.1| two-component response regulator protein [gamma proteobacterium IMCC3088] Length = 579 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 22/204 (10%) Query: 71 LVIISITI--SLLLGYISGSILKELFISYNR--------ISQLSRIDCLSGLLNHSAF-- 118 L+I S+ + +L GY L+ +S N I +L+ +D L+GLLN AF Sbjct: 371 LLIASVLLMAALWRGYTDKRKLEAELLSRNSKLEDALNTIQKLASVDSLTGLLNRRAFHD 430 Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 + + +S+ D+D FKQIND++GH VGD+V+ ++ +L V Sbjct: 431 IARQALEHKRRTDTPISLALGDVDKFKQINDSYGHAVGDEVLTEIASRLTNSLRGTDVVV 490 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF + + A LA LR + ++ + G +++I+ G+A+ + + Sbjct: 491 RWGGEEFLCFFPTTDIKAAMALAEKLRLAVNAYPVSTAFG-EFNVSITFGLAQ--VDDDV 547 Query: 234 STIIYRADQALYVAKKSGRNRVVC 257 I RAD+ALY K G N VC Sbjct: 548 QDAIRRADKALYDGKHMGGN--VC 569 >gi|229825564|ref|ZP_04451633.1| hypothetical protein GCWU000182_00925 [Abiotrophia defectiva ATCC 49176] gi|229790127|gb|EEP26241.1| hypothetical protein GCWU000182_00925 [Abiotrophia defectiva ATCC 49176] Length = 478 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 29/216 (13%) Query: 53 IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112 +G+ P LE + L+LV +++ L+GY+ +++ + + S ID L+GL Sbjct: 270 VGVIPDERLEVNSIGELNLV--GESVNNLVGYLRENLV---------LQKKSEIDALTGL 318 Query: 113 LN---HSAFISSLGSY---NEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--V 163 N + + L Y N+K L + DIDYFKQ NDN+GH GD+ I ++ +L + Sbjct: 319 PNRMSYDQYSEELEKYLYANQKTLGVEILDIDYFKQYNDNYGHQNGDECIKMIAGELQKL 378 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISA 222 V ++ R GG+EF G E +L+K +++ + S S +T++ Sbjct: 379 VQECPKIYAARYGGDEFVIIYPGLLLSEVEGFVKNLKKAVQSKGMEHKFSKASDVVTVTQ 438 Query: 223 GIAERC-----HKEPISTIIYRADQALYVAKKSGRN 253 G+ C + +S + RAD+ALY KK GRN Sbjct: 439 GV---CFDIFSKGKTLSDFLKRADEALYEEKKIGRN 471 >gi|221068675|ref|ZP_03544780.1| response regulator receiver modulated diguanylate cyclase [Comamonas testosteroni KF-1] gi|220713698|gb|EED69066.1| response regulator receiver modulated diguanylate cyclase [Comamonas testosteroni KF-1] Length = 312 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 11/183 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFK 140 S+ EL ++ +++++ +D L+GL+N A I++ + L+++ D+D+FK Sbjct: 119 SVSAELHLANQKLNEMVELDALTGLVNRRGLDRMLHAEIAAARRESRPLTLMLCDLDHFK 178 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND +GH GD+ + + L V P R GGEEFA + + A L Sbjct: 179 HFNDTYGHVQGDECLKQVGRLLREVCVRPRDIAARYGGEEFALVLPNTPRSGSMTFARAL 238 Query: 200 RKIIENSQINISSG-PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 ++++ +I I +T+S GI E S +++ RAD+ALY AK GRNR Sbjct: 239 GQMLKFLKIRPPGTVEDIPLTLSGGITTCIPDEHTSAESMLMRADEALYAAKSQGRNRFF 298 Query: 257 CFS 259 F Sbjct: 299 SFE 301 >gi|162456909|ref|YP_001619276.1| FHA domain-containing protein [Sorangium cellulosum 'So ce 56'] gi|161167491|emb|CAN98796.1| FHA domain protein [Sorangium cellulosum 'So ce 56'] Length = 299 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 14/200 (7%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122 ++++N V I TI ++SG+ ++ + + I +++ ID L+ + N +L Sbjct: 104 VVLKNGDRVKIGPTI---FKFLSGADVEAQY--HEEIYRMTIIDGLTQIHNKRYLYEALE 158 Query: 123 -----GSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 G +E+ L+I+ FDID+FK+IND GH GD V+ ++ + R G Sbjct: 159 REIIRGRRHERDLAILLFDIDHFKRINDVHGHLAGDFVLKEVARIVQSRIRRDEVFARYG 218 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST- 235 GEEFA +S + AA L LR+ + + + SI +TIS G+A + + Sbjct: 219 GEEFAIILPETSIEGAAALGETLRQKVA-EHLFVFQADSIRVTISVGVALLQEGDRTAND 277 Query: 236 IIYRADQALYVAKKSGRNRV 255 +I RAD+ LY AK SGRNRV Sbjct: 278 LIKRADERLYHAKNSGRNRV 297 >gi|134103559|ref|YP_001109220.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea NRRL 2338] gi|291008080|ref|ZP_06566053.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea NRRL 2338] gi|133916182|emb|CAM06295.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Saccharopolyspora erythraea NRRL 2338] Length = 687 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 13/178 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ + D L+GL N + F+ LG E++++ + D+D FK IND+ GH VG Sbjct: 249 ERLRHQAMHDPLTGLPNRALFLEKLGVALENHGPGERVALCYMDLDGFKVINDSLGHHVG 308 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKIIENSQI 208 D ++ +S++L + G V R+GG+EF S E AI D L ++E +I Sbjct: 309 DDLLIAVSERLALSARGENRLVARMGGDEFVILVQDSPGTEQAIEVADRVLDALVEPVRI 368 Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G + ++ S GI ER + + ++ AD LY AK G+ + F N T Sbjct: 369 G---GHELSVSASIGIVERPVRGQTAAELMRDADVTLYWAKAEGKGQWALFDPDRNAT 423 >gi|304395058|ref|ZP_07376942.1| diguanylate cyclase [Pantoea sp. aB] gi|304357311|gb|EFM21674.1| diguanylate cyclase [Pantoea sp. aB] Length = 364 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 2/128 (1%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 K ++ D+D+FKQ+ND FGH GD ++A +S L G R GG+E + Sbjct: 222 KAWLMLLDVDHFKQVNDTFGHEAGDFLLAEISALLRNSVGLKDIPARFGGDELCVIVRDA 281 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 E +LA +++ I + + + + P+ ++S GIA E I + AD+ALY Sbjct: 282 DEASITLLAEQIKQGI--ALLRLPASPTFQCSVSIGIAPASDAESIHQWLRCADEALYQV 339 Query: 248 KKSGRNRV 255 K++GRN + Sbjct: 340 KRAGRNNI 347 >gi|295096828|emb|CBK85918.1| diguanylate cyclase (GGDEF) domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 367 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 10/188 (5%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEK 128 + +L ++S L R+ +S D ++G+ N + + L + + + Sbjct: 178 VVYPILFAWLSHRTAIRLAEHKRRLELMSTRDGMTGVFNRRHWETLLRNEFEACRRSHRQ 237 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +I+ DID+FK IND +GH VGD+ I ++ QL + + ++GR GG+EFA G+ Sbjct: 238 ATILLIDIDHFKTINDTWGHDVGDEAIVAITRQLQLTLRSGDYIGRFGGDEFAVIMSGTP 297 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247 A + + + + N + + P + IS G+A + + AD ALY A Sbjct: 298 ADSAIAAMSRVHERLVN--MPLHGAPMARLCISVGVAPWGAQFTHYREWLKAADVALYKA 355 Query: 248 KKSGRNRV 255 K +GR R Sbjct: 356 KNAGRGRT 363 >gi|316931733|ref|YP_004106715.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315599447|gb|ADU41982.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 557 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 18/184 (9%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139 G +EL S +R+S ++ +D LSGL N F S L ++L+++ D+D+F Sbjct: 362 GQRERELVASNSRLSVMASMDLLSGLANRRGFQSRLDFEWMKSQQTGQRLALMMIDVDHF 421 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEF----AAAALGSSEQEAAI 194 K ND++GHP GD ++ + + L V T F R GGEEF A +G + Q Sbjct: 422 KLFNDSYGHPEGDACLSRIGETLAAVAAETGGFAARYGGEEFCLLLPEAGIGRAIQ---- 477 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGR 252 + +R +E + + P +T+S G+A E S +I AD ALY AK GR Sbjct: 478 VGEMVRTTVEQLTLPHRTSPFERVTVSIGVACTLPSEQASPAELIEAADAALYAAKHRGR 537 Query: 253 NRVV 256 N VV Sbjct: 538 NNVV 541 >gi|256396884|ref|YP_003118448.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928] gi|256363110|gb|ACU76607.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928] Length = 592 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 12/159 (7%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L + E ++++F D+D FK +ND+ GH GD+V+ + Sbjct: 417 DPLTGLANRALLTDRLEHALTQRQAEWEPVAVIFLDLDGFKGVNDSVGHETGDRVLVEAA 476 Query: 160 DQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLR-KIIENSQINISSGPSIH 217 ++ V R GG+EF +G++ A ++A +R ++ E +I GP+ H Sbjct: 477 GRISGSLRVGDTVARFGGDEFVIVLEVGTTVGGALVVAERIRGRLCEEYRIE---GPAHH 533 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + S G+A S ++ RAD A+Y AK +GRNRVV Sbjct: 534 LGASIGVAFSEPGGSASNLLRRADAAMYRAKTAGRNRVV 572 >gi|251800195|ref|YP_003014926.1| diguanylate cyclase with GAF sensor [Paenibacillus sp. JDR-2] gi|247547821|gb|ACT04840.1| diguanylate cyclase with GAF sensor [Paenibacillus sp. JDR-2] Length = 361 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 11/163 (6%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 QL+ D L+GLLN F I+ G + + D++ FKQ ND GH VGD V Sbjct: 195 QLTERDILTGLLNRRGFSVRIQGWINRAGREEGFFGVFYLDLNKFKQCNDTHGHEVGDLV 254 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINISSG 213 + ++++ G V RLGG+EF AA + + AN L +E QI Sbjct: 255 LVEFANRIKNATGESALVARLGGDEFVVAAWLQKDNDLVQTANRLVSQLELPMQIKELRL 314 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P +T S G + + ++ ADQ++Y+AK +G NR+ Sbjct: 315 P---MTTSVGCTLWSEGKTETDLLREADQSMYLAKSNGTNRIA 354 >gi|170743553|ref|YP_001772208.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46] gi|168197827|gb|ACA19774.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46] Length = 669 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 15/173 (8%) Query: 102 QLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +L+ D L+GL N F ++L G +L++ FD+D+FK IND++GH GD+V+A Sbjct: 240 RLAHTDSLTGLPNRRYFFAALDGLRDGPDRAELALAIFDLDHFKSINDSYGHSAGDRVLA 299 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILAND-LRKIIENSQINIS 211 +L + G + V RLGG+EF A ALG +D LR+ I +S Sbjct: 300 ETGRRLGSLAGKAVRVARLGGDEFGALIDARALGRDVAAFCREVSDLLRQPFRAGDILLS 359 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G S + A A+R + + AD ALY +K+ R V +S +++ Sbjct: 360 PGCSCGVAF-ASAADR----DGAALFDHADHALYQSKQHRRGAVTVYSKEQDD 407 >gi|122879102|ref|YP_200079.6| response regulator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 494 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 12/178 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L+ + + ++S + +D L+G+ N AF L LS++ D+D+FK Sbjct: 315 LRRMHRNEAQLSTEAWVDALTGIANRRAFDDRLSRALQDAIRLEAPLSVLMIDVDHFKLY 374 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD + ++ + V R GGEEF + A LA+ +R Sbjct: 375 NDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEEFGMILPHTDAAGALRLADAVRN 434 Query: 202 -IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 + E +++SS S H+T+S G+A + P+S I++ AD ALY AK+ GRNR Sbjct: 435 AVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNAIVHDADSALYRAKQKGRNRT 492 >gi|40787298|gb|AAR90215.1| hypothetical protein PDK3.074 [Rhodococcus sp. DK17] Length = 343 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 11/153 (7%) Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + A + + +++ + D+D FK +ND GH VGD + L+ Sbjct: 187 DQLTGLPNRALVHQQIDAALDAAAGSEHRVAALLIDVDEFKSLNDRLGHAVGDDALIRLA 246 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218 +QL V V R+GG+EF G++ E AI L I + Q+ S+G + Sbjct: 247 EQLRSVVRPADTVARIGGDEFLIVCPGTASVEEAIA---LATRITDLQVGADSAGRPLRF 303 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 T S GIA +E T+I RAD A+Y AK +G Sbjct: 304 TASVGIALAGPQETRQTLIRRADAAMYHAKATG 336 >gi|329895750|ref|ZP_08271141.1| hypothetical protein IMCC3088_1678 [gamma proteobacterium IMCC3088] gi|328922180|gb|EGG29536.1| hypothetical protein IMCC3088_1678 [gamma proteobacterium IMCC3088] Length = 414 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 12/167 (7%) Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 SR D L+GL N F Y LS++ D+D+FK ND +GH GD + Sbjct: 245 SRSDALTGLANRRHFDEQFAREWERHYQYKATLSVIAIDVDHFKLYNDTYGHSAGDSCLT 304 Query: 157 FLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + L + R GGEEFA + Q A + A ++ + IE+ + P+ Sbjct: 305 KIGETLSDIAKRFSSLAARYGGEEFALLMPSTDAQLAQVAAREILQTIEDLNCAFPASPT 364 Query: 216 IHITISAGIAERCHKEPISTI----IYRADQALYVAKKSGRNRVVCF 258 +S + S + I AD+ALY AK+ GRN+V + Sbjct: 365 TKSRLSVSLGVHTTVPATSAVANSFIQEADKALYAAKRLGRNQVQVY 411 >gi|319778117|ref|YP_004134547.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171836|gb|ADV15373.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 737 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 21/188 (11%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 L + N I L+ D L+GL + F S L + E+L+I++ D+D FKQ+ND Sbjct: 298 RLIETENHIYHLAHYDLLTGLHSRGHFNSRLADALTLLPATGEQLAILYLDLDRFKQVND 357 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSEQEAAILANDL-- 199 +FGHP GD+++ +D+L + V RLGG+EF A G E E L L Sbjct: 358 SFGHPAGDELLREFADRLRRLTLEVDTVARLGGDEFIIIQRAVAG--ENEVKTLCEHLIE 415 Query: 200 --RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 R+ E + + + G +++ +A R + + ++ +AD ALY AK GR+ Sbjct: 416 SARRPFEVAGVQVFVG----VSVGVALAPRDGVDQVE-LVRKADLALYHAKAGGRSGYAL 470 Query: 258 FSDIENNT 265 F + T Sbjct: 471 FEPEMDQT 478 >gi|255656226|ref|ZP_05401635.1| putative signaling protein [Clostridium difficile QCD-23m63] Length = 391 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 30/242 (12%) Query: 41 TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFISYNR 99 +VI FLF P G++ I S ++ + I+ L ++S + + +F Y++ Sbjct: 150 SVIVFGGCFLFLNFFLP--GIQTIPGNEFSNIVNTFFITSLAVFVSTMLYRSRVFTYYDK 207 Query: 100 I---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFFDID 137 + Q I ++ LLN L N E ++ + DID Sbjct: 208 LLISQQYEEIYHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDID 267 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAIL 195 YFKQ NDN+GH GD + ++ ++++ F + R GGEEF E++A + Sbjct: 268 YFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCDEEDAKLK 326 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253 + LRKIIE P +T+S G+ + I+ I D+ALY AK+ GRN Sbjct: 327 SECLRKIIETCNFERDDIPLKCVTVSIGVYTNKIERTITLNEFISNCDKALYTAKEQGRN 386 Query: 254 RV 255 V Sbjct: 387 CV 388 >gi|206560339|ref|YP_002231103.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] gi|198036380|emb|CAR52276.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] Length = 466 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 9/177 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S L+EL + ++ ++ D ++G N FI+ + ++ D+D FK Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFK 348 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH +GD+V+ + Q + + R+GGEEF A + A + A +R Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 408 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +S + + +T+S G+A+ + T++ D+ LY AK+ GRNRVV Sbjct: 409 SSISSSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDTLLRVVDERLYQAKREGRNRVV 464 >gi|253700773|ref|YP_003021962.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M21] gi|251775623|gb|ACT18204.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M21] Length = 300 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + Y+ ++F D+D FK++ND FGH GD+V++F++ L V GR GGEEF Sbjct: 165 MSRYDIPFGVLFMDLDDFKRVNDVFGHETGDRVLSFVAGTLSVNSRPFDLYGRWGGEEFV 224 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 + + LRK++E S + + + +TIS G ++ + +++ RAD Sbjct: 225 GIVRNVTAANLKHMGQRLRKLVEKSFLLVGE-ERLRVTISIGATMALPEDTLQSLLQRAD 283 Query: 242 QALYVAKKSGRNRVV 256 +Y +K +G+NR+ Sbjct: 284 LLMYQSKAAGKNRLT 298 >gi|121591234|ref|ZP_01678534.1| ggdef family protein [Vibrio cholerae 2740-80] gi|121546908|gb|EAX57060.1| ggdef family protein [Vibrio cholerae 2740-80] Length = 438 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 3/138 (2%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFG 147 ++L + ++S L++ D L+ + N +F L + + L+++ FDID FK IND FG Sbjct: 289 QQLEEANQKLSYLAKTDSLTDIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFG 348 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD I F+ + + + R+GGEEFA A G + +E+ LA + + + + Sbjct: 349 HGAGDNAICFVVGCVRQALASDTYFARIGGEEFAIVARGKNAEESQQLAERICQRVAEKK 408 Query: 208 INISSGPSIHITISAGIA 225 +++ S+ +TIS G A Sbjct: 409 WVVNAQHSLSLTISLGCA 426 >gi|303325687|ref|ZP_07356130.1| sensory box protein [Desulfovibrio sp. 3_1_syn3] gi|302863603|gb|EFL86534.1| sensory box protein [Desulfovibrio sp. 3_1_syn3] Length = 468 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 23/189 (12%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYF 139 I E R+++L+ D L+GL N SL Y EK L +V DID F Sbjct: 10 KIYNEWQAQNRRLTELNATDYLTGLPNRR----SLEEYLEKAIARGSGNLGVVMADIDAF 65 Query: 140 KQINDNFGHPVGDKVIAFLSD--QLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAA 193 K ND +GH GD+V+A ++ Q V G + V RL GEEF A S Q A Sbjct: 66 KSFNDAYGHMAGDQVLAGIARCLQDAVPKGKGL-VSRLSGEEFVIVLPDADAESINQVAE 124 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSG 251 + +++K +N + +I H+T+S G + ER +IY+AD AL AKK+G Sbjct: 125 TILRNIQK--QNLRHDIVPLTDTHVTLSMGSILWERKEPHTPRELIYQADLALSQAKKNG 182 Query: 252 RNRVVCFSD 260 R++ V FS+ Sbjct: 183 RDQHVLFSE 191 >gi|301052276|ref|YP_003790487.1| sensory box/GGDEF family protein [Bacillus anthracis CI] gi|300374445|gb|ADK03349.1| sensory box, GGDEF family protein [Bacillus cereus biovar anthracis str. CI] Length = 569 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|307727606|ref|YP_003910819.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003] gi|307588131|gb|ADN61528.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia sp. CCGE1003] Length = 522 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 11/167 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFG 147 S ++ L+R D L+GL N L + ++++ D+D FK +ND G Sbjct: 334 SEAKVLYLARHDSLTGLANRRELRERLEKILVNVRSGRATQTAVLYLDLDGFKLVNDRHG 393 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+ ++ +L RLGG+EFA ++ +I+A R I E ++ Sbjct: 394 HSAGDEVLETVAARLRQTLRHGEMAARLGGDEFAVVVEDATLP--SIVAIAQRVIREVAK 451 Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +++G S+ I S GIA EP+ ++ RAD+A+Y AKK+G+ Sbjct: 452 PYPLAAGVSMSIGTSIGIALAQEHEPVDDLVRRADEAMYSAKKAGKG 498 >gi|262165609|ref|ZP_06033346.1| GGDEF family protein [Vibrio mimicus VM223] gi|262025325|gb|EEY43993.1| GGDEF family protein [Vibrio mimicus VM223] Length = 443 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 25/171 (14%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GLLN AF L N KL+++FFD+D FK+IND+ GH VGD V+ Sbjct: 269 LSERDSLTGLLNRRAFKQQLSQALIKAKRSNLKLALLFFDLDKFKEINDSKGHDVGDIVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAA------ALGSSEQEAAILANDLRKIIENSQIN 209 ++ +L F GRLGG+EF G ++ IL L+ I N + Sbjct: 329 REVAQRLKATIRESDFCGRLGGDEFVVCLDILQDHSGVRDKSYQILDKLLKPIRVNDE-- 386 Query: 210 ISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + +S GIA E+ + P ++ AD+A+YVAK + + C Sbjct: 387 -----DLIVGVSIGIALYPEQGTQMP--GLLRVADEAMYVAKHQSGSMIYC 430 >gi|237802423|ref|ZP_04590884.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025280|gb|EGI05336.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 432 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 32/220 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 206 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 255 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 256 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGKAYRYGG 315 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + +E +R+ I +I N S P S+ + Sbjct: 316 EEFAIVFAAKTIEECLPHLEAIREAIATYEIQLRNKDSRPQDDQQGRQRRSGAQAGSVSV 375 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G+AER H+ P ++ ADQALY AK +GRN VV Sbjct: 376 TVSIGVAERQPEHRTP-EEVLKCADQALYAAKGAGRNCVV 414 >gi|153212272|ref|ZP_01948060.1| GGDEF family protein [Vibrio cholerae 1587] gi|124116650|gb|EAY35470.1| GGDEF family protein [Vibrio cholerae 1587] Length = 372 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 16/180 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++L+ ++ LS D L+GL N + L + V DID FK +N Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDSQQPFVCVMIDIDGFKAVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH VGDKV+ +++ L F + V RLGG+EF + +A + + I Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETDTAGGVYIAEQVCRAI 312 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I++ + ++S G+A + H E ++ ADQA+Y+AK G+NRV F Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKEHHE----LLRAADQAVYLAKNRGKNRVCAF 368 >gi|110641208|ref|YP_668938.1| hypothetical protein ECP_1024 [Escherichia coli 536] gi|300982668|ref|ZP_07176252.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1] gi|110342800|gb|ABG69037.1| hypothetical protein YcdT [Escherichia coli 536] gi|300307133|gb|EFJ61653.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1] gi|324013302|gb|EGB82521.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1] Length = 455 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF + A LA +R+ +E N + I + Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTEIDTECAKALAERIRENVERLTGDNPEYAIPQ--KV 402 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 403 TISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441 >gi|108798585|ref|YP_638782.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. MCS] gi|119867685|ref|YP_937637.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS] gi|126434184|ref|YP_001069875.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS] gi|108769004|gb|ABG07726.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. MCS] gi|119693774|gb|ABL90847.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS] gi|126233984|gb|ABN97384.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS] Length = 781 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 22/228 (9%) Query: 49 FLFYIGLTPFYGL---EYILVENLSLVIISITISLLLGYISGSIL---------KELFIS 96 FL YIG GL ++ ++ ++I++ + ++ + ++ +L+ + Sbjct: 293 FLPYIGFLCIIGLLSYHLLIGRDMPKLVIAVAVVMIALVTARQVVAMRAQRLVTNQLYEA 352 Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R++ D L+GL N F L ++ K ++F DID FK++ND FGH GD + Sbjct: 353 QRRLAHQVHHDPLTGLPNRVLFAKRLDEAMHDGKFVLIFVDIDDFKEVNDQFGHAAGDDL 412 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSG 213 + + ++L G + R+GG+EF A L E +A ++A+ LR + + G Sbjct: 413 LCAVGERLRRCVGPSDTLARIGGDEF--AILVEGEHDAPEVVADKLRVALRDP--FAVHG 468 Query: 214 PSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258 S+ + S G+ EP T ++ +AD ++Y K+ G++ V + Sbjct: 469 SSVRVRASMGLVRPSVDEPNPTSDDLLRQADISMYAGKRLGKDTAVVY 516 >gi|58425657|gb|AAW74694.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 515 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 12/178 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L+ + + ++S + +D L+G+ N AF L LS++ D+D+FK Sbjct: 336 LRRMHRNEAQLSTEAWVDALTGIANRRAFDDRLSRALQDAIRLEAPLSVLMIDVDHFKLY 395 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD + ++ + V R GGEEF + A LA+ +R Sbjct: 396 NDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEEFGMILPHTDAAGALRLADAVRN 455 Query: 202 -IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 + E +++SS S H+T+S G+A + P+S I++ AD ALY AK+ GRNR Sbjct: 456 AVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNAIVHDADSALYRAKQKGRNRT 513 >gi|331646285|ref|ZP_08347388.1| inner membrane protein YcdT [Escherichia coli M605] gi|330910840|gb|EGH39350.1| sensory box/GGDEF domain protein [Escherichia coli AA86] gi|331045037|gb|EGI17164.1| inner membrane protein YcdT [Escherichia coli M605] Length = 455 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF + A LA +R+ +E N + I + Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTEIDTECAKALAERIRENVERLTGDNPEYAIPQ--KV 402 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 403 TISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441 >gi|262173521|ref|ZP_06041198.1| GGDEF family protein [Vibrio mimicus MB-451] gi|261890879|gb|EEY36866.1| GGDEF family protein [Vibrio mimicus MB-451] Length = 696 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 13/178 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144 +EL +++Q +R D L+ L N A+ + Y + +++ D+D FK +ND Sbjct: 521 QELQNVNRKLAQAARTDSLTQLYNRRAYEEFIQEYWQTYQAQQPITLAVMDLDGFKLVND 580 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH VGD+++ +D L +F P + RLGG+EFA G +Q L + I Sbjct: 581 QLGHQVGDELLRLFADLLRDIFDRPTDRLTRLGGDEFAVIMSGFEQQSHLNLLAQV--IT 638 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFS 259 E SQ S H+++S G A ++T + ADQALY AK +G+ ++V FS Sbjct: 639 EFSQRTAQSFN--HLSVSIGAASIIPTPAMTTDSFFSLADQALYQAKANGKQQLVVFS 694 >gi|228474320|ref|ZP_04059055.1| ggdef domain protein [Staphylococcus hominis SK119] gi|228271679|gb|EEK13026.1| ggdef domain protein [Staphylococcus hominis SK119] Length = 356 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 12/201 (5%) Query: 68 NLSLVIISITISLLLGYISGSILKEL---FISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 +L+ +II I IS +L S ++ F R + D L+GL N F L Sbjct: 149 DLTELIILIPISFVLTITSAVTFVDIWHFFSLVTRYENEDKYDYLTGLGNVKEFDRHLNK 208 Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 ++K L+++ DID FK +ND + H GD V+ +S L + R GG Sbjct: 209 ISQKAEIEHTSLALLLVDIDGFKDVNDTYTHKAGDAVLKQMSQLLKNYVPHQFKIFRNGG 268 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--T 235 EEF+ S ++ LA ++R +E S ++ + I +++S G+ E S Sbjct: 269 EEFSIVIFDYSLDQSVKLAENIRMAVEKSSFHLPNKEVIKLSVSIGVGYLSPDEYKSQRK 328 Query: 236 IIYRADQALYVAKKSGRNRVV 256 + AD ++VAKK GRN+V+ Sbjct: 329 VFKDADDMVHVAKKEGRNQVM 349 >gi|218245788|ref|YP_002371159.1| diguanylate cyclase [Cyanothece sp. PCC 8801] gi|218166266|gb|ACK65003.1| diguanylate cyclase [Cyanothece sp. PCC 8801] Length = 494 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 17/169 (10%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL E+ L I+ D+D+FK +ND FGH GD+V+ L Sbjct: 328 DALTGLYNRRYLEESLKKELERAKRKERSLGIIMIDVDHFKNVNDTFGHDKGDQVLKKLG 387 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEE +S + A LR+ ++N +++ +T Sbjct: 388 GFLQRHIRGSDIACRYGGEELTLILPEASLENTRQRAEQLRQAVKNLDLDLCDHT---LT 444 Query: 220 ISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFS--DIEN 263 IS GIA C H ++ ADQALY AK+ GR+ V+C DIE+ Sbjct: 445 ISVGIA--CFPEHGYSGKALLKTADQALYQAKQQGRDCVICPPILDIED 491 >gi|156933995|ref|YP_001437911.1| hypothetical protein ESA_01821 [Cronobacter sakazakii ATCC BAA-894] gi|156532249|gb|ABU77075.1| hypothetical protein ESA_01821 [Cronobacter sakazakii ATCC BAA-894] Length = 352 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 11/194 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSL 122 +L +IS+ + L L +S ++ L + + + D L + N A + Sbjct: 159 TLPLISVYV-LALSMVSHALSARLREKTRELERFANTDPLLNIANRRRLEHDIDAALQRF 217 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + +++F DID FK ND +GH GD+++ SD L V R GG+EF Sbjct: 218 HQSEQPAALMFIDIDDFKAANDRYGHEAGDQLLVTFSDILRAATRGGDTVARFGGDEFVV 277 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRAD 241 +S A +A+ R + + +Q+++ P++ T+S GIA + S + AD Sbjct: 278 LLPDTSFGRACAVAD--RIMAQTAQMDVFPKPALRCTLSIGIARATAEMREASQWLKAAD 335 Query: 242 QALYVAKKSGRNRV 255 +ALY AK+ G+NR+ Sbjct: 336 EALYSAKREGKNRI 349 >gi|124268236|ref|YP_001022240.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum PM1] gi|124261011|gb|ABM96005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylibium petroleiphilum PM1] Length = 778 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 17/184 (9%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ++E + RI L+ D L+GL N +AF +S S + +++++F D+D+FK+I Sbjct: 340 IRERVAAQARIHHLAHHDALTGLPNRAAFGLQLERLTASHRSGDAQIALLFIDLDHFKRI 399 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILAN 197 ND+ GH VGD ++ ++ ++ V R GG+EF G + EQ A L Sbjct: 400 NDSLGHLVGDLLLQTVTARITDNLRADDLVARFGGDEFMVLIPGVTDRSVVEQVAGKLLA 459 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +E + +IS PSI +++ H + +I AD A+Y+AK GR V Sbjct: 460 VIEAPLEAAGRSISVSPSIGVSLFPE-----HGRTPAELIQHADAAMYMAKARGRANVQF 514 Query: 258 FSDI 261 F + Sbjct: 515 FDPV 518 >gi|58582237|ref|YP_201253.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624130|ref|YP_451502.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576798|ref|YP_001913727.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576990|ref|YP_001913919.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426831|gb|AAW75868.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368070|dbj|BAE69228.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521250|gb|ACD59195.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521442|gb|ACD59387.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] Length = 990 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN + +++L L++V D+D+FK +ND GH GD V+A + Sbjct: 816 DELTGLLNRAGILAALREMLLHAARSGRPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 875 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ + +GR GGEE A G + L R I + ++ +H+T Sbjct: 876 HRMDTLVRGDDRIGRYGGEELLALLPGLTPGATHRLDAMHRGICGDYPVDDG---WLHVT 932 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E + ++ RAD ALY AK+SGRNR+ Sbjct: 933 CSIGVAWFQAGETLEQLLARADAALYRAKRSGRNRI 968 >gi|85710890|ref|ZP_01041951.1| GGDEF domain protein [Idiomarina baltica OS145] gi|85695294|gb|EAQ33231.1| GGDEF domain protein [Idiomarina baltica OS145] Length = 343 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 8/162 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G+ N + L + +S DIDYFK++ND +GH GD+ Sbjct: 175 TELAVTDTLTGVYNRKQLQTDLEHLVALKKRHGRPISAALCDIDYFKEVNDKYGHFDGDR 234 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ + + F V R+GGEEF + + A A LR + + Sbjct: 235 LLIQAAQLIKSSFRASDKVFRVGGEEFVILMPDTDLEGATRAAEKLRATFSANHFELKED 294 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P +++TIS G++E +E + RAD+ LY AK GRN+V Sbjct: 295 P-VNMTISIGVSELESEENWLAWLERADKLLYHAKDMGRNQV 335 >gi|116051699|ref|YP_789462.1| two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|313109108|ref|ZP_07795080.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|115586920|gb|ABJ12935.1| probable two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|310881582|gb|EFQ40176.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 347 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 12/168 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK ND FGH GD Sbjct: 167 LQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYNDTFGHVAGD 226 Query: 153 KVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + + R GGEEFA G+S A +LA +R+ +E+ QI + Sbjct: 227 EALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHD 286 Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P ++T+S G++ + +I ADQALY AK +GRN+V Sbjct: 287 QPRPGSYLTVSIGVSTLVPGGGGQTFRVLIEMADQALYQAKNNGRNQV 334 >gi|330969162|gb|EGH69228.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 628 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 21/167 (12%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N + ++ L S E+ +++F D+D FK +ND+ GH GD+++ ++ Sbjct: 200 DELTSLFNRAYLMNELTTAFETRKSRYERATVLFLDLDGFKVVNDSMGHLAGDQLLKGVA 259 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214 ++L + + R+GG+EFA +G + E A+ K+ E SQ+N + G Sbjct: 260 NRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAV------KMAERIVSQLNTAIQIEGQ 313 Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I I+ S GI A H +P ++ AD A+Y AKK GR R F+ Sbjct: 314 DIFISCSIGIVSAGESHTKP-EELLRDADVAMYSAKKQGRGRWSIFN 359 >gi|281178141|dbj|BAI54471.1| conserved hypothetical protein [Escherichia coli SE15] Length = 496 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 326 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 385 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF + A LA +R+ +E N + I + Sbjct: 386 IGKSIRPDDLLARVGGEEFGVLLTEIDTECAKALAERIRENVERLTGDNPEYAIPQ--KV 443 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 444 TISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 482 >gi|256059197|ref|ZP_05449403.1| response regulator PleD [Brucella neotomae 5K33] gi|261323146|ref|ZP_05962343.1| response regulator receiver modulated diguanylate cyclase [Brucella neotomae 5K33] gi|261299126|gb|EEY02623.1| response regulator receiver modulated diguanylate cyclase [Brucella neotomae 5K33] Length = 461 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S R S D L+GL N ++ + LSI+ D+D+FKQ+N+ +GH Sbjct: 288 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 347 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ S +L + R GGEEF + Q A +A +R I+ + Sbjct: 348 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRDIVAEAPF 407 Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G +T+S G+A R + + + RA AL AK+SGRNR+V Sbjct: 408 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 457 >gi|239995196|ref|ZP_04715720.1| GGDEF protein [Alteromonas macleodii ATCC 27126] Length = 961 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 8/159 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N AF L Y E+ L + DID+FKQ+ND + H VGDKVI ++ Sbjct: 803 DDLTGIANRRAFDRWLVQYFEEAKAKQSPLCLAVIDIDHFKQVNDQYSHLVGDKVITEVA 862 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF A + + +RKI+ + + ++ +T Sbjct: 863 RILNREVPHYAKCARWGGEEFTVLLPEYDLVNARVAMDHVRKIVAAHDFSFIA-QTLKVT 921 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 IS G+A ++ ADQALY AK++GRN+V F Sbjct: 922 ISIGVASADGARDHDRMLTHADQALYTAKENGRNQVTIF 960 >gi|146305544|ref|YP_001186009.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp] gi|145573745|gb|ABP83277.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp] Length = 557 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 9/169 (5%) Query: 97 YNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + ++ + + D L+GL N S ++ N L++ D+D+FK++ND GH Sbjct: 378 HEQLREQALCDPLTGLYNRRYLDEFFSRELARAQRENLPLALALIDLDHFKRLNDECGHL 437 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD V+ ++ L+ + V R+GGEEF G EA ++ + I Sbjct: 438 VGDDVLKAVAKHLLDNLRSTDAVFRIGGEEFLLILPGVDPVEACERLQNICSQLAGQSIA 497 Query: 210 ISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVC 257 G +T+SAG+A + + +++ AD ALY AK+ GRNRV C Sbjct: 498 TRGGDQ-QVTLSAGLAHWPQQGVVLEELLHAADAALYQAKRGGRNRVCC 545 >gi|330976496|gb|EGH76547.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 332 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK +ND +GH GD V+ +++ GR+GGEEFAA G + Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVA 247 A +A L++ I+ S G + IT S G+ +P + T+ RAD A+Y A Sbjct: 263 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGADDPSLETLHGRADAAMYQA 321 Query: 248 KKSGRNRVV 256 K+ G+N++V Sbjct: 322 KRQGKNQIV 330 >gi|329907280|ref|ZP_08274598.1| hypothetical protein IMCC9480_3196 [Oxalobacteraceae bacterium IMCC9480] gi|327547045|gb|EGF31931.1| hypothetical protein IMCC9480_3196 [Oxalobacteraceae bacterium IMCC9480] Length = 359 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 87/191 (45%), Gaps = 30/191 (15%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFI--------------SSLGSYNEKLS-------- 130 ++ +Y + S D L+GLLN F S+L S E+ Sbjct: 150 VYRNYQNLLDYSERDSLTGLLNRRTFDEKFSRMVACSTPADSTLASTTERRHPNDIEGQW 209 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + DID+FK++ND FGH GD+V+ +++ L F T V R GGEEF S Sbjct: 210 LAVVDIDHFKRVNDQFGHLYGDEVLILVANLLRSSFRTQDRVFRFGGEEFVILLRSVSLA 269 Query: 191 EAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +A LR IE P + IT+S G P+ I+ ADQALY AK Sbjct: 270 DARTAFERLRANIEEHHF-----PQLGTITVSIGFVSISSSTPV-VILGHADQALYFAKS 323 Query: 250 SGRNRVVCFSD 260 +GRN+ VCF D Sbjct: 324 NGRNQ-VCFYD 333 >gi|320195645|gb|EFW70270.1| hypothetical protein EcoM_02071 [Escherichia coli WV_060327] Length = 410 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVFLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|256821596|ref|YP_003145559.1| diguanylate cyclase [Kangiella koreensis DSM 16069] gi|256795135|gb|ACV25791.1| diguanylate cyclase [Kangiella koreensis DSM 16069] Length = 602 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 11/167 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVF--FDIDYFKQINDNFGHPVG 151 R+ + S+ D L+GL + F + S EK + F FD+DYFK +ND +GH VG Sbjct: 424 RLRKQSQTDQLTGLSSRHHFYETAKAILHRSEQEKQDVGFILFDMDYFKSVNDKYGHLVG 483 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ + GRLGGEEFA + ++A LA R+ + SQI+ S Sbjct: 484 DWVLQKTAEVVKASCRQNDLAGRLGGEEFAIFLPACNLEKAKQLAEICRRAV--SQIDTS 541 Query: 212 -SGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +G ++ S G+ + + +I D+A+Y AKK+GRN++V Sbjct: 542 ETGYRFDVSSSFGVTSTELSGFDLMDLIADTDKAMYSAKKNGRNQIV 588 >gi|229491557|ref|ZP_04385378.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodococcus erythropolis SK121] gi|229321238|gb|EEN87038.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodococcus erythropolis SK121] Length = 775 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 9/186 (4%) Query: 81 LLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIV-F 133 +LG+ GS + E ++ I +L+ D L+GL N AF +L EK +V Sbjct: 323 ILGWRGVGSDITERYVHEQEILRLAATDSLTGLPNRRAFGVALEEAIDSRAPEKQVLVGI 382 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D FK +ND GHP+GD+++ ++ +L V G+ M R+GG+EF SS + Sbjct: 383 LDLDNFKSVNDTLGHPIGDQLLLEVTKRLRDVIGSDM-CSRMGGDEFGLIVCTSSRDDPG 441 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ + +++ + + TI A + ++ AD ALY AK +GRN Sbjct: 442 VIFDRYLEVLHEPFFVEGNRIEVRATIGYSSAPEDSTD-ADGLVMLADLALYEAKSTGRN 500 Query: 254 RVVCFS 259 RV FS Sbjct: 501 RVGKFS 506 >gi|226941568|ref|YP_002796642.1| Diguanylate cyclase [Laribacter hongkongensis HLHK9] gi|226716495|gb|ACO75633.1| Diguanylate cyclase [Laribacter hongkongensis HLHK9] Length = 347 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 11/180 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYFKQIND 144 EL ++ ++ Q++ D L+G+ + F +L ++ LS + DID+FK++ND Sbjct: 166 ELEMANAQLRQMAMYDSLTGVYSRGVFFELASEALALTRQECAPLSALMLDIDFFKKVND 225 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ +L +GR GGEEFA A +A L + Sbjct: 226 TWGHAAGDQVLRLAGRRLREQLRGSDIIGRCGGEEFAVILPRQQADRACAVAQQLCDAMC 285 Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN--RVVCFSDI 261 G I +IS G+AE + E I +++RAD AL AK GRN R+ SD+ Sbjct: 286 TRPFPW-EGQQIACSISIGVAELSREDESIEKLLHRADLALLQAKGDGRNCYRLASGSDL 344 >gi|168213938|ref|ZP_02639563.1| GGDEF domain protein [Clostridium perfringens CPE str. F4969] gi|170714563|gb|EDT26745.1| GGDEF domain protein [Clostridium perfringens CPE str. F4969] Length = 545 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%) Query: 99 RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R S+L + D L + N ++I++L + +S + D+DYFK NDN+GH GD + Sbjct: 372 RDSKLDSLKDGLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFI 431 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 + ++ L V R GGEEF G+S+ + A +++ ++N I S Sbjct: 432 LKSIASVLEKNSRKEDIVARYGGEEFCVLLKGASKYSSINYAKRIKENLDNLNIKHKYSK 491 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S H+T S GI K + I +D+ALY++K GRN D Sbjct: 492 TSDHVTFSIGIYTTYTKNDLKNAIKFSDKALYISKTRGRNTYTYLED 538 >gi|172062630|ref|YP_001810281.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] gi|171995147|gb|ACB66065.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] Length = 510 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 12/186 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 L+ I+ +++ +L+ D L+GL N F + L ++ LS++F D+D+FK Sbjct: 326 LRRRQIAESKLYRLAHTDSLTGLDNRGTFDAVLAKEAQRASRSGRPLSVLFVDVDHFKAF 385 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD V+ ++ V R GGEEF + + AA +A +R+ Sbjct: 386 NDYYGHLAGDDVLRRVAQSASRCLRRDSDHVARYGGEEFVVTLPDTDARGAATVAEAIRR 445 Query: 202 IIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I I P H+T S G A + + ++ +AD+ALY AK GRNRV SD Sbjct: 446 AIAALDIAHGRSPYGHVTTSIGTATATGGRVNAAALLRQADEALYRAKSGGRNRV---SD 502 Query: 261 IENNTC 266 E +T Sbjct: 503 AEASTA 508 >gi|17232666|ref|NP_489214.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134312|dbj|BAB76873.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 601 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ ID L+ + N L Y + LS +D KQIN N+GH +G Sbjct: 434 RLGNLAEIDTLTLVANRRKSTQELNHYLQWCHTHQQTLSFAVVKLDGLKQINYNYGHEIG 493 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V++ L + L +F + VGR GG EF G ++ E +L K + + Sbjct: 494 DRVLSQLGELLRQMFHSQDVVGRWGGTEFILGMAGITKGEGVRRLGELLKTFRQIEFINT 553 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S S H T+SA + E ++Y+ AD L+ +K +GRNRV+ Sbjct: 554 SNQSFHATLSAAVVEYPQDGDKLEVLYQAADIVLHQSKATGRNRVL 599 >gi|89094506|ref|ZP_01167445.1| hypothetical protein MED92_09101 [Oceanospirillum sp. MED92] gi|89081242|gb|EAR60475.1| hypothetical protein MED92_09101 [Oceanospirillum sp. MED92] Length = 229 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 81/191 (42%), Gaps = 19/191 (9%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKL-- 129 T+++ L Y + S KE Y +LS D L+ L N F +L KL Sbjct: 45 TMAVSLAYFAYSRWKEAMGFYRTAHRLSIRDSLTDLYNRRYFTETLQQEISNCNRSKLPF 104 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ D+D FK+IND GH GD V+ S L R GGEEF + Sbjct: 105 TLILIDLDDFKRINDTMGHETGDDVLVGFSQVLSKELRKSDTAARWGGEEFIILCRNTDN 164 Query: 190 QEAAILA----NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 A ++A N LRK I H+T + GI E + II +AD LY Sbjct: 165 PSAQMIADKLLNALRKKI--------YPKDTHVTATMGITTSFGNETMEIIIKKADDCLY 216 Query: 246 VAKKSGRNRVV 256 K G+N+ V Sbjct: 217 TGKSRGKNQAV 227 >gi|103488206|ref|YP_617767.1| diguanylate cyclase/phosphodiesterase [Sphingopyxis alaskensis RB2256] gi|98978283|gb|ABF54434.1| diguanylate cyclase/phosphodiesterase [Sphingopyxis alaskensis RB2256] Length = 543 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 43/251 (17%) Query: 37 IFIATVIFIA---NIF------LFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG 87 + AT++FI N+ L IG P L LV N++L+ L G+ Sbjct: 24 VVAATLLFIGTGGNVMQAVVRALIGIGGGPDRVLATALVLNIALI--------LFGWRRY 75 Query: 88 SIL----KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136 + L +E + R L+ D L+G LN A I+ + ++++ D+ Sbjct: 76 NDLNREIRERTEAEQRARYLADTDPLTGFLNRRALLVKGQRMIAEAVAEKREVALFLLDL 135 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA------AALGSSEQ 190 D+FK +ND GH GD+V+ ++++ V RLGG+EF A +A G + Sbjct: 136 DHFKTVNDIHGHAAGDRVLQVAAERIAAVLPPNATKARLGGDEFVAMMAFDPSARGDIDA 195 Query: 191 EAA--ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 AA + A D R + + QI I + I + G++ + T++ +AD A+Y K Sbjct: 196 LAAELVTALDNRIMHDAQQIRIGASLGIALASDGGVS-------MDTMVRQADIAMYHGK 248 Query: 249 KSGRNRVVCFS 259 GRNR V F Sbjct: 249 DEGRNRHVWFE 259 >gi|260893471|ref|YP_003239568.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ammonifex degensii KC4] gi|260865612|gb|ACX52718.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ammonifex degensii KC4] Length = 673 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 1/134 (0%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DID F+ +NDN+G+ GD+++ + L + R+ G++F E Sbjct: 273 ALLVIDIDNFQLVNDNWGYKAGDRLLQAFARFLQENIREEDIIARVAGDKFMVLMEDVFE 332 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +EA LA +LR+ +E + G IT+SAGI+ E T++ +AD AL AK+ Sbjct: 333 EEACKLAEELRRRVEEGSFELD-GQRCRITVSAGISMVKGDEAAETVMSQADLALRRAKE 391 Query: 250 SGRNRVVCFSDIEN 263 GRNRVV F E Sbjct: 392 EGRNRVVLFRPEEE 405 >gi|261210900|ref|ZP_05925190.1| GGDEF family protein [Vibrio sp. RC341] gi|260839875|gb|EEX66475.1| GGDEF family protein [Vibrio sp. RC341] Length = 358 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 17/227 (7%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF--- 94 +ATV+ + + L Y+ F L + V S +++ S + I G++L LF Sbjct: 134 LLATVLAVMMVML-YVPFIAFQTLPLMSVFRASAIVVQSLFSFI---ILGTMLT-LFLFE 188 Query: 95 -ISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIV-FFDIDYFKQINDNFGHP 149 I ++R+ + D L+G N F + + +E S++ DID+FKQIND++GH Sbjct: 189 EIEWHRLRSIR--DELTGAFNRRYFKEQVQNKLRTSESASVIALVDIDHFKQINDSYGHD 246 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD VI F+ L + V R GGEEFA A S + + +R I Sbjct: 247 VGDAVITFVVRHLEALDLAECLVARYGGEEFAIFACESDMVKVHHALDKVRNAIAAGFTF 306 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++I A + +R + +AD ALY AK+ GRNRV+ Sbjct: 307 EKQAIEVSVSIGAVLLDR--PSEYGETLRQADVALYQAKQEGRNRVM 351 >gi|256829253|ref|YP_003157981.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gi|256578429|gb|ACU89565.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] Length = 339 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 10/173 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 +EL + +R+S+LS D L+G+ N F ++L + L+++ DID+FK+ N Sbjct: 157 RELEEANHRLSELSLTDGLTGIANRRRFDAALAEEWSRSARTGSTLALIMLDIDHFKKYN 216 Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D++GH GD + +++ L V R GGEEF ++ A +A LR+ Sbjct: 217 DHYGHQQGDDCLRRVAEVLRSSARRQGDLVSRYGGEEFCMILPDTALPGAFEIAERLRRE 276 Query: 203 IENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRN 253 +EN + +T S G+A C + ++ RAD++LY AK GRN Sbjct: 277 VENMDMPHVLSDVGRVTASMGVAASMPCKAMSPAELLRRADESLYQAKSEGRN 329 >gi|152972850|ref|YP_001337996.1| hypothetical protein KPN_04370 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957699|gb|ABR79729.1| hypothetical protein KPN_04370 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 510 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 21/175 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 K+ +SY R + ID L+G N AF I++L + ++ ++ DID FK IND +G Sbjct: 346 KQRELSYVRQAT---IDALTGCKNRRAFDSDIAALMNDHQPFALALVDIDNFKSINDTWG 402 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 H GD V+ ++ + + V P+ + R GGEEFA A ++ R ++E Sbjct: 403 HLNGDIVLRNVAREGLQVL-QPLEISLYRYGGEEFAVVF-------PAEHIDNARTLLET 454 Query: 206 SQINISSG----PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +IN+ + +T SAG+ E + EP+ ++ D+ALY AK+ G+NR++ Sbjct: 455 WRINVERRTWREDGLTVTFSAGLGE-WNMEPLDKLVVSVDEALYKAKQQGKNRIL 508 >gi|84622981|ref|YP_450353.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366921|dbj|BAE68079.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 502 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 12/178 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L+ + + ++S + +D L+G+ N AF L LS++ D+D+FK Sbjct: 323 LRRMHRNEAQLSTEAWVDALTGIANRRAFDDRLSRALQDAIRLEAPLSVLMIDVDHFKLY 382 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD + ++ + V R GGEEF + A LA+ +R Sbjct: 383 NDTYGHVNGDACLRVIAGTIAACSRRSEDVAARYGGEEFGMILPHTDAAGALRLADAVRN 442 Query: 202 -IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 + E +++SS S H+T+S G+A + P+S I++ AD ALY AK+ GRNR Sbjct: 443 AVAELGLMHLSSPTSAHVTVSIGVATFEPGEAPLSPNAIVHDADSALYRAKQKGRNRT 500 >gi|317407210|gb|EFV87196.1| diguanylate cyclase [Achromobacter xylosoxidans C54] Length = 490 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/155 (38%), Positives = 85/155 (54%), Gaps = 10/155 (6%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N + L + ++V DID+FK++ND +GH VGDKVI ++ QL+ Sbjct: 336 DPLTGLRNRRGTQDAVDHLQAAGTPFAVVALDIDHFKRVNDTYGHTVGDKVIQDVA-QLM 394 Query: 164 VVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 P + R GGEEF G + EA I+A LR+ +I++ G IT+SA Sbjct: 395 RDCSRPSDILCRNGGEEFLILLPGVAPTEAVIVAERLRQRTAEREIDLVGG----ITVSA 450 Query: 223 GIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 G+A+ P + + AD ALY AK+ GRNRVV Sbjct: 451 GVAQWPTNGPEVLQAFHAADAALYAAKQQGRNRVV 485 >gi|332140687|ref|YP_004426425.1| GGDEF protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550709|gb|AEA97427.1| GGDEF protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 946 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 8/159 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N AF L Y E+ L + DID+FKQ+ND + H VGDKVI ++ Sbjct: 789 DDLTGIANRRAFDRWLVQYFEEAKAKQTPLCLAVIDIDHFKQVNDQYSHLVGDKVITEVA 848 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF A + + +RKI+ + + ++ +T Sbjct: 849 RILNREVPHYAKCARWGGEEFTVLLPEYDLINARVAMDHVRKIVAAHDFSFIA-QTLKVT 907 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 IS G+A ++ ADQALY AK++GRN+V F Sbjct: 908 ISIGVASADGARDHDRMLTHADQALYTAKENGRNQVTIF 946 >gi|300935449|ref|ZP_07150444.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] gi|300459331|gb|EFK22824.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1] Length = 374 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 220 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 279 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 280 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 335 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 336 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 373 >gi|153832797|ref|ZP_01985464.1| ggdef family protein [Vibrio harveyi HY01] gi|148870931|gb|EDL69821.1| ggdef family protein [Vibrio harveyi HY01] Length = 409 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 81/309 (26%), Positives = 138/309 (44%), Gaps = 66/309 (21%) Query: 8 FLSIWLCHEKNLESFSPHTFMIYFSIF---------------FSIFIATVIFIAN----- 47 FL+++L +++ +S + T+++ S+F F + ++FI Sbjct: 101 FLAVFLFNKEGFDSKATLTYVLMLSMFVFWSYVTLTYYVEGGFEEWTNGILFIVPTVSKL 160 Query: 48 ---IFLFYIGLTPFYGLEYILVENLSLVIISITISLLL-----------GYISGSI--LK 91 + L+ IG+ F G ILV + +I ++T S ++ YIS ++ L Sbjct: 161 PLVLVLYCIGIVCFLG---ILVLKKNKIIHAMTYSAMVLASATFIFFDVQYISSTMFTLT 217 Query: 92 ELFI---SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 L I S + QL+ D L+ + + A L K +I D+D+FK+ ND +GH Sbjct: 218 GLLIIIYSTSASHQLAFTDSLTLIPSRRALDLDLKHMGRKFTIAMLDVDHFKKFNDTYGH 277 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII----- 203 GD V+ ++ +L+ G V R GGEEF G ++ ++R++I Sbjct: 278 DTGDDVLKMVASRLMKTQGGAK-VYRFGGEEFTIVFKGKYTEDCEAHLEEVRELIAQYEM 336 Query: 204 ----------ENSQINISSG------PSIHITISAGIAE-RCHKEPISTIIYRADQALYV 246 +N Q G ++ +T S G+A+ R + P + +I AD ALY Sbjct: 337 ILRDQDNRPDDNKQGRKKRGNADSKQKTVSVTASFGVADSRSARNP-ADVIKLADDALYK 395 Query: 247 AKKSGRNRV 255 AKK+GRN V Sbjct: 396 AKKAGRNCV 404 >gi|152995911|ref|YP_001340746.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150836835|gb|ABR70811.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 517 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 12/177 (6%) Query: 85 ISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDY 138 + +IL L +I+QL + D L+GL N + L + E +++ DID+ Sbjct: 339 LKRAILSGLAALNQKINQLNIDTNTDPLTGLYNRRSLDQILEQWREMKQSFAVIALDIDH 398 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK IND FGH VGD+V+ LS + + R GGEEF + + A A Sbjct: 399 FKVINDLFGHDVGDEVLKQLSQIMKETCDKNAIIFRNGGEEFLILLPSTKQSVAQFFAEK 458 Query: 199 LRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 LR I ++ I+ +IT+S GI+ + + I + +AD ALY AK+ GRN Sbjct: 459 LRIKIAQHEMPIAD----NITVSLGISYWDNNSNDTIKMTLKKADIALYQAKRQGRN 511 >gi|160898708|ref|YP_001564290.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1] gi|160364292|gb|ABX35905.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Delftia acidovorans SPH-1] Length = 947 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 12/170 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGHPVG 151 RI QL+ D L+ L N S ++ S+ S+ +L++VF D+D FKQ+ND+ GHP G Sbjct: 500 RIRQLAFYDGLTTLPNRSLLLAQAEQALSVASHEGHELAVVFIDLDRFKQVNDSLGHPAG 559 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINI 210 D+++ ++ ++ T GRL G+EF +AA + L+ + E I+ Sbjct: 560 DRLLCSVAQRIQAELRTGDIAGRLSGDEFVIVLPHCGGAQAAEVIERLQSALGEPCMIDD 619 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S S T S GIA + T+++RAD A+Y AK GR FS Sbjct: 620 VSLAS---TASCGIAVFPADGRDMETLLHRADMAMYQAKSGGRGLYSFFS 666 >gi|110799538|ref|YP_695666.1| GGDEF domain-containing protein [Clostridium perfringens ATCC 13124] gi|110674185|gb|ABG83172.1| GGDEF domain protein [Clostridium perfringens ATCC 13124] Length = 545 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%) Query: 99 RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R S+L + D L + N ++I++L + +S + D+DYFK NDN+GH GD + Sbjct: 372 RDSKLDSLKDGLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFI 431 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 + ++ L V R GGEEF G+S+ + A +++ ++N I S Sbjct: 432 LKSIASVLEKNSRKEDIVARYGGEEFCVLLKGASKYSSINYAKRIKENLDNLNIKHKYSK 491 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S H+T S GI K + I +D+ALY++K GRN D Sbjct: 492 TSDHVTFSIGIYTTYTKNDLKNAIKFSDKALYISKTRGRNTYTYLED 538 >gi|152988006|ref|YP_001347170.1| hypothetical protein PSPA7_1787 [Pseudomonas aeruginosa PA7] gi|150963164|gb|ABR85189.1| hypothetical protein PSPA7_1787 [Pseudomonas aeruginosa PA7] Length = 381 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 22/177 (12%) Query: 100 ISQLSRI----DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148 IS+L R+ D L+GL N +F L + L+++ D+D+FK ND +GH Sbjct: 206 ISRLLRLMADHDSLTGLHNRRSFNQHLDRLWRQAQREQQTLALLLCDVDHFKAYNDRYGH 265 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD V+ + L P+ + RLGGEEFA G++E EA + A LR+ ++ + Sbjct: 266 QAGDTVLQRIGGVLEANARRPLDMAVRLGGEEFALLLYGANEHEARLRAEALREQVQALR 325 Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYR-------ADQALYVAKKSGRNRVV 256 + + S + +T+S G++ C + R AD+ALY AK GRN+VV Sbjct: 326 MEHEGSQTAREVTLSIGVS--CLWPAPGNDLKRLYDLYEHADRALYEAKAFGRNQVV 380 >gi|313897542|ref|ZP_07831084.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2] gi|312957494|gb|EFR39120.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2] Length = 527 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 13/183 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFG 147 + E ++ ++S S D L+GL N F + ++SI++ D+DYFK +ND +G Sbjct: 343 MTEEYLLEQQLSSNSNTDYLTGLYNRRYFYEYYADLRKFKQISILYVDLDYFKTVNDTYG 402 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSE--QEAAILANDLRKI 202 H VGD+ + ++ L +F + + RLGG+EF A++ + E ++ L ++L+K Sbjct: 403 HQVGDEALRISAEVLKKMFPKDL-IARLGGDEFLVSMTASMSAQELLRQGNRLIHELQKH 461 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 E + ++ S+ I+ + R I ++ +D ALY AK+ GR++ + Sbjct: 462 FERNAYYMNLSASVGISYTTDPVMR-----IDDLVRESDTALYKAKQQGRSKCQLYERAA 516 Query: 263 NNT 265 +NT Sbjct: 517 SNT 519 >gi|156936414|ref|YP_001440330.1| hypothetical protein ESA_04315 [Cronobacter sakazakii ATCC BAA-894] gi|156534668|gb|ABU79494.1| hypothetical protein ESA_04315 [Cronobacter sakazakii ATCC BAA-894] Length = 507 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 18/191 (9%) Query: 89 ILKELFISYNRISQ-LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 +L++ N I Q L+ +D L+GL N F ++ + +S+V DIDYFK Sbjct: 312 VLRDDLTRSNHILQDLALLDGLTGLPNRRQFDIYLEQCMTRAQATGAPVSLVMCDIDYFK 371 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMF----VGRLGGEEFAAAALGSSEQEAAILA 196 ND GH GD+ + + + ++ P+ V R GGEEFA G++ A +A Sbjct: 372 SYNDTLGHVAGDECLKAVGE---ILHHLPLHKSDRVARYGGEEFAIILPGANAHAAEQVA 428 Query: 197 NDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253 + I+ +++ + P + +TISAG A + T+ +AD+ALY AK++GRN Sbjct: 429 MRALQAIQQARLAHPATPMVEKVLTISAGTATMTGDDASGETLKNQADEALYQAKRAGRN 488 Query: 254 RVVCFSDIENN 264 VV + + + Sbjct: 489 CVVGATGVSHT 499 >gi|154173826|ref|YP_001409181.1| response regulatory protein [Campylobacter curvus 525.92] gi|112803522|gb|EAU00866.1| response regulatory protein [Campylobacter curvus 525.92] Length = 371 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 12/209 (5%) Query: 57 PFYGLEYILVENLSLVIISI-TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115 P + + + N++LV +I +S+ I+ S +++ ++ ++S+ D L+GLLN Sbjct: 149 PHWAEMTLTITNIALVFYTILKMSIYADVITSSGYQQVHEEKEQLEKMSKYDFLTGLLNR 208 Query: 116 SAFISSLG---------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 +L + N L ++ DID FK IND +GH GDK++ ++ L+ F Sbjct: 209 RTIEKALKYELSMLRDKNANTNLVVMLGDIDNFKMINDTYGHDWGDKILKEIAKTLLATF 268 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 +V R GGEEF + + N L K I + + + ++ +T + Sbjct: 269 RKNDYVCRWGGEEFLIILPDTKIDFIHKITNRLTKNI--NHVKLPDKTAVSMTFGMLVCI 326 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRV 255 II R D+ LY K++G++R+ Sbjct: 327 NAASVNFEYIINRVDKLLYRGKQNGKDRI 355 >gi|89899270|ref|YP_521741.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89344007|gb|ABD68210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 1037 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 12/170 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I QL+ D L+GL N S +S + ++L+I+F D+D+FK IND GH VG Sbjct: 606 QIQQLAHFDQLTGLPNRSQLHDRFRYALSLAQRHGDQLAIMFLDLDHFKNINDTLGHSVG 665 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINI 210 D+++ +S +L + RLGG+EF G+ E +A+ +A L + + QI Sbjct: 666 DQLLVDVSRRLKAALREEDSLSRLGGDEFILLLPGTDEAQASQVATKLLAAVAQPCQIEQ 725 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + S T+S GIA + + T+ AD A+Y K++ RN F+ Sbjct: 726 NELVS---TVSIGIALYPNDGQDFETLSKNADAAMYRVKQASRNDFRFFT 772 >gi|289626069|ref|ZP_06459023.1| response regulator WspR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330867548|gb|EGH02257.1| response regulator WspR [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 328 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 159 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 218 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + I +I Sbjct: 219 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHI 278 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 + P +T+S G+A + + + +I AD+ LY+AK +GRN+V Sbjct: 279 APTPGSSLTVSIGVATVTPQVGMHSRQLILDADKGLYLAKNNGRNQVAA 327 >gi|264679214|ref|YP_003279121.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262209727|gb|ACY33825.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 387 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 15/211 (7%) Query: 52 YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111 ++ L F G ILV SLV + I LL ++G+ E RI+Q++ D L+ Sbjct: 174 FVNLASFRG-AVILV---SLVEGVMAIMLLAMSMTGT---ERHRREERIAQIAARDPLTA 226 Query: 112 LLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 L N A + S +++ DID+FKQ+ND GH GD+++ LSD + + Sbjct: 227 LDNRRALYLRAPELLRQASPASPGALLLIDIDHFKQVNDLHGHDAGDRLLVTLSDLIRGL 286 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGI 224 RLGG+EF S A L +LR+ + ++ ++ + ++I A + Sbjct: 287 LPHGAQAARLGGDEFVILLRSVSGAVAQELGQNLRESFAQQARAMFATPEPVSLSIGATL 346 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ E +S + RAD+ALY +K+ GR+R+ Sbjct: 347 FDQPETE-LSHWLKRADEALYASKRKGRDRM 376 >gi|239993620|ref|ZP_04714144.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126] Length = 299 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 +S R+ Q++ D L+GL N + F S+ +++ +++ D+D FK +NDNFG Sbjct: 133 LSLMRVQQMATKDVLTGLGNRAGFEQSMTRQLGWAQRHDDPFALLVIDLDNFKYVNDNFG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GDKV+ ++ L V R GG+EF S+Q+ A A ++ I +S Sbjct: 193 HGEGDKVLVHVASHLSNVLRDEDEAFRYGGDEFCCLLDCQSQQQLACAAQRIQMSINSS- 251 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 S + ++ S G A + +S++ RAD ALY K SG+N Sbjct: 252 ---SYLSRLGVSTSLGGAIYRDGDTMSSLFDRADNALYRVKNSGKN 294 >gi|224370301|ref|YP_002604465.1| diguanylate cyclase (GGDEF) domain protein [Desulfobacterium autotrophicum HRM2] gi|223693018|gb|ACN16301.1| diguanylate cyclase (GGDEF) domain protein [Desulfobacterium autotrophicum HRM2] Length = 576 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 16/179 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 K L + ++ L D L+ + N F L ++ LS++ DIDYFK N Sbjct: 391 KRLETANQKLQTLVTSDGLTMIANRRKFDEYLDQEWQRCKRAKVWLSLLMCDIDYFKHYN 450 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD + ++ + PM V R GGEEFA + A +A +++ Sbjct: 451 DTYGHQAGDDCLRKIAQAMEKTVVRPMDLVARYGGEEFAVILSDTGLNGACHVARRIQED 510 Query: 203 IENSQINIS-SGPSIHITISAGIAERC---HKEPIST--IIYRADQALYVAKKSGRNRV 255 ++N I S S S H+T+S GI C E +S +I AD+ALY AK+ GRNR+ Sbjct: 511 VKNLNIAHSESSVSTHVTLSIGIT--CLIPDDEDLSMDLLIKTADEALYKAKRKGRNRM 567 >gi|303326446|ref|ZP_07356889.1| GGDEF domain protein [Desulfovibrio sp. 3_1_syn3] gi|302864362|gb|EFL87293.1| GGDEF domain protein [Desulfovibrio sp. 3_1_syn3] Length = 483 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 12/163 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ L N A + + + FD+D+FKQIND GH GD Sbjct: 323 LEKLAVTDKLTSLPNRGALGDIISREVEAARDWKRTCHAFLFDVDFFKQINDRHGHLAGD 382 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + G V R GG+EF +E+ A+L L + E+ ++ Sbjct: 383 RVLVLAARLARENAGEDGMVARWGGDEFFGLLHADAEESRALLERLLAAMREHPELR--- 439 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++S G+ + + +++ RAD+ALY +KK GR+R+ Sbjct: 440 --KWGVSLSIGVTRIKETDDMDSLVSRADEALYRSKKDGRDRL 480 >gi|303247216|ref|ZP_07333490.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] gi|302491375|gb|EFL51263.1| diguanylate cyclase [Desulfovibrio fructosovorans JJ] Length = 288 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 12/166 (7%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+ L N AF L + + L++V D+D FK +ND +GHP GDKV+ Sbjct: 94 LSEHDPLTKLYNRGAFERILSAELVRAYRAGQSLALVLLDVDDFKAVNDTYGHPCGDKVL 153 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSG 213 L L+ + R+GGEEFA A ++ + + + + I + S Sbjct: 154 EDLGAMLLAEKRAYDYAARIGGEEFALILPSVGLVRAEMVVSRVLAAVRSMTILCDGVST 213 Query: 214 PSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVC 257 P +HITISAG+A K P + + AD ALY AK +G++RV+ Sbjct: 214 P-LHITISAGLAITKGKIPTTREKLYALADTALYQAKTAGKDRVMA 258 >gi|299534196|ref|ZP_07047547.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298717843|gb|EFI58849.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 456 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 15/212 (7%) Query: 63 YILVENLSLVIISITISLLLGYIS-----GSILKELFISYNRISQLSRIDCLSGLLNHSA 117 Y + +L+I S+ +L + +I G LK + + ++ L+R D L+GL N Sbjct: 241 YAVWRQRALLIASVMGTLTMAFIGLSFAFGVQLKRRMRAESELALLARTDGLTGLNNRRK 300 Query: 118 F-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 + S++F DID+FK ND +GH GD V+A ++ + P Sbjct: 301 LDEIIEHEWHRAKRSHSAFSLLFVDIDWFKAYNDTYGHQAGDMVLATVARCIASNIRRPE 360 Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 R GGEEF ++ A++A ++R+ + I + IT+S G A Sbjct: 361 DSAARYGGEEFIVVLPDTTLDGGALIAENIREAVSELAIAHTGSEFGCITVSIGCAAWVP 420 Query: 230 KE--PISTIIYRADQALYVAKKSGRNRVVCFS 259 + + ++ AD+ALY AK +GRN+VV S Sbjct: 421 GKDLDVQEVLRSADKALYGAKMTGRNKVVLSS 452 >gi|285019288|ref|YP_003376999.1| sensor protein [Xanthomonas albilineans GPE PC73] gi|283474506|emb|CBA17007.1| putative sensor protein [Xanthomonas albilineans] Length = 569 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 8/163 (4%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL + LS++ D+D+FKQ ND GH GD ++A + Sbjct: 402 DPLTGLFNRRYLEESLQHELARCERRSMPLSLLMLDVDHFKQFNDVHGHGGGDSLLAAVG 461 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF + +EA ++A +R N+ +T Sbjct: 462 QMLSSRLRGEDIACRYGGEEFTVILPETGPEEALVIAEHIRAAAPQLNANLDGKALPGVT 521 Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDI 261 +S G+A ++T + R AD ALY AK+SGRN+V + I Sbjct: 522 LSIGLASYSRDGTVATTLLRKADAALYRAKRSGRNQVQQYDSI 564 >gi|257459114|ref|ZP_05624233.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Campylobacter gracilis RM3268] gi|257443499|gb|EEV18623.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Campylobacter gracilis RM3268] Length = 1355 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 13/197 (6%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNE 127 S+T + +L + S +K+ + +++++ D L+GL N F ++ G ++ Sbjct: 810 SLTSNFILMFTEISQIKQ---KESELAKIAHHDALTGLPNRVYFMKAAQRFTANSGENSK 866 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 ++++F D D FK IND +GH VGD + +S + + + RLGG+EF A Sbjct: 867 LMAVLFIDFDGFKAINDTYGHEVGDMFLQAISKAMSGLLRKGDILARLGGDEFGAIIGDL 926 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALY 245 ++AA + D I + N+ G I +IS G A + K ++ RAD+A+Y Sbjct: 927 QSKDAAHVLLDRLLGISKMKFNL-KGNEISASISVGAAFYDGSEKIDFPGLLSRADRAMY 985 Query: 246 VAKKSGRNRVVCFSDIE 262 AK SG+NR F E Sbjct: 986 RAKTSGKNRYCIFERAE 1002 >gi|157164638|ref|YP_001467734.1| DNA polymerase III delta prime subunit HolB [Campylobacter concisus 13826] gi|112800329|gb|EAT97673.1| diguanylate cyclase [Campylobacter concisus 13826] Length = 349 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 5/155 (3%) Query: 107 DCLSGLLNHSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GLLN ++ N +IV DID FK+IND +GH GD+V+ LS Sbjct: 187 DPLTGLLNRASMQQIFRQKNLFDGNDFAIVMCDIDNFKKINDTYGHGAGDEVLKSLSKIF 246 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 F V R GGEEF A + +A + +R+ + + + + I Sbjct: 247 KNAFRNEDRVARFGGEEFLAVIFDVKKAKAVSILERIRETLNQNVVEFENHRIIATMTFG 306 Query: 223 GIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 +A H E I +I +AD+ LYV K++G+N V+ Sbjct: 307 VVAHSGHTEVNIERMIKQADELLYVGKRNGKNIVM 341 >gi|59713338|ref|YP_206113.1| GGDEF domain-containing protein [Vibrio fischeri ES114] gi|59481586|gb|AAW87225.1| GGDEF domain protein [Vibrio fischeri ES114] Length = 482 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 9/174 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEK--LSIVFFDIDYFKQI 142 LK+ ++ S+L+ D L+G+ N AF N+K S++ DID FK+ Sbjct: 306 LKKTRAQKDKYSELAYNDYLTGVNNRRAFEKQANKVFKTYQNDKQVFSLIMCDIDNFKEY 365 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH VGD++I S+ V RLGG+EF +++A ++A L+ + Sbjct: 366 NDKFGHDVGDQMITAFSEACSAQINQDDIVARLGGDEFIVLLHHKDKEQAVMVAESLQNV 425 Query: 203 IENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 I + + + + +T S G+A + ++ AD LY AK++GRN V Sbjct: 426 IRDLSV-LVDDQELSMTCSMGVATVSELTTSLHELLNIADTQLYKAKEAGRNCV 478 >gi|119775663|ref|YP_928403.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119768163|gb|ABM00734.1| GGDEF domain-like protein [Shewanella amazonensis SB2B] Length = 319 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 14/180 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF----------ISSLGSYNEKLSIVFFDIDYFKQ 141 ++ ++ R+ S+ D L+GLLN A+ I + ++ FDID+FK+ Sbjct: 126 RIYENFARVVLDSQTDGLTGLLNRKAYDARLFHLFSHIRTETRRAPYFWMLTFDIDFFKK 185 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND GH GD+V+ +S + F + R GG+EF S+ E + L Sbjct: 186 INDTLGHLYGDEVLLRISRAMNDCFSDDDALFRFGGDEFVVLLDNKSQHEVECICRKLMA 245 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + + +GP +T+S GI ++ +++ +AD+ALY AK +GRNR + D+ Sbjct: 246 DVGKVH-HEKTGP---VTLSIGITSLTLEDNPMSVMMKADKALYFAKDNGRNRWAFYHDL 301 >gi|327485169|gb|AEA79576.1| GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 312 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI--SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS + S+ID L+ L N F S + L ++ FDID+FKQIND +GHP GD Sbjct: 146 ISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPETLLGLIIFDIDHFKQINDTYGHPAGD 205 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L R GGEEF LA ++R +E+ + + Sbjct: 206 YVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRCYVESHTL-MWQ 264 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G I +T+SAG A H +++ ADQAL AK+ GRNRV+ Sbjct: 265 GQQIALTLSAGCTIGAMMSHN--WDNLLHTADQALLSAKRLGRNRVI 309 >gi|306812536|ref|ZP_07446729.1| putative diguanylate cyclase [Escherichia coli NC101] gi|305853299|gb|EFM53738.1| putative diguanylate cyclase [Escherichia coli NC101] Length = 455 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF + A LA +R+ +E N + I + Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTEIDTECAKALAERIRENVERLTGDNPEYAIPQ--KV 402 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 403 TISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 441 >gi|134093574|ref|YP_001098649.1| hypothetical protein HEAR0293 [Herminiimonas arsenicoxydans] Length = 556 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 10/159 (6%) Query: 106 IDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 ID L+ L N F++ + + +++ D+D+FK IND++GH +GD V+ Sbjct: 394 IDFLTQLPNRRYFMTRMEEELARTRRIDGARTAVLMCDLDHFKTINDSYGHAIGDLVLKH 453 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + L VGR+GGEEFA + EA I A +R + + I+ +I+ Sbjct: 454 FAVILRNALRRNDMVGRVGGEEFAVVLFDAGVAEAEIFAQRVRSQLAEIPL-IALNQNIN 512 Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S GIA I + R+D ALY AK++GRNR+ Sbjct: 513 VTVSIGIAMMHASDANIDVSLSRSDTALYRAKQAGRNRI 551 >gi|54302104|ref|YP_132097.1| GGDEF family protein [Photobacterium profundum SS9] gi|46915525|emb|CAG22297.1| hypothetical GGDEF family protein [Photobacterium profundum SS9] Length = 413 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 27/173 (15%) Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 ID L+ + A + L + + ++ DID+FK+ ND +GH GD V+ ++ QL+ Sbjct: 243 IDQLTAIPGRRALETELKNLGKTYTLAMLDIDHFKKFNDLYGHKTGDNVLTLVA-QLITK 301 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS------- 215 G + R GGEEF G ++ LR I + N + P Sbjct: 302 VGGGAQIFRYGGEEFTILFKGKKSEQCEEHLEKLRLAIAEYNLVLRNYAERPDNDKQGSM 361 Query: 216 ----------IHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255 IH+T+S GIA+ EP S ++ AD ALY AK+SGRNR+ Sbjct: 362 TRKNNVIHRYIHVTVSIGIAD---SEPTSNPGIVLKAADDALYRAKESGRNRL 411 >gi|330955138|gb|EGH55398.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7] Length = 318 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 110/256 (42%), Gaps = 31/256 (12%) Query: 23 SPHTFMIYFSIF-----FSIFIATVIF---IANIFLFYIGLTPFYGLEYILVENLSLVII 74 SPH Y FSIF+ + + + ++ + +GL Y ++ E V+ Sbjct: 6 SPHMVRKYLYTLLWFYVFSIFLLAIAWEFELESVAMVAMGLP--YDQDFENAERWRFVLT 63 Query: 75 SITISLLLGYISGSILKELFI----SYNRI-------SQLSRIDCLSGLLN----HSAFI 119 S ++L I +LK L SYN + L+R D LSGLLN H + Sbjct: 64 STGFAVLSMVIPFILLKRLMQRLHSSYNDLLESQALSESLARHDPLSGLLNRRVFHEQLV 123 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGE 178 + L ++ D+D FK IND GH GD I +++ L G V RLGG+ Sbjct: 124 ARLRQPATHTAVFLIDLDKFKLINDTHGHAAGDAAICAVAESLRDATVGWQASVARLGGD 183 Query: 179 EFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTI 236 EF A G S E LA ++ I S + + P + ++ + GIA + Sbjct: 184 EFGLAVSGDFSHAELGPLAENILAKIAASSVGL---PRVVLSATLGIAIAPMDGSDADLL 240 Query: 237 IYRADQALYVAKKSGR 252 + RAD A+Y K GR Sbjct: 241 LQRADSAMYRGKTGGR 256 >gi|300949591|ref|ZP_07163580.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1] gi|300954759|ref|ZP_07167190.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1] gi|300318285|gb|EFJ68069.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1] gi|300450997|gb|EFK14617.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1] Length = 452 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTRGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 345 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441 >gi|323528611|ref|YP_004230763.1| diguanylate cyclase [Burkholderia sp. CCGE1001] gi|323385613|gb|ADX57703.1| diguanylate cyclase [Burkholderia sp. CCGE1001] Length = 517 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 14/191 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128 + +S LL + L+ + +++L+ D L+GL N L + Sbjct: 323 VVVSWLLAFA----LRGKLQAQAALTRLAATDPLTGLGNRRVLDKRLDEEWRRARRTGQP 378 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 LS +F DID+FK+ ND +GH GD+ ++ +++ + + V R GGEEFA + Sbjct: 379 LSALFIDIDHFKRFNDTYGHASGDEALSAVAECIATTVRRAVDVVARYGGEEFAVILPDT 438 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALY 245 S A +A +R+ ++ I S +T+S G A E ++ AD+ LY Sbjct: 439 SADGALAVAEKIRRRVQTHDILHGGDGSPTVTVSVGCATSVPAQGENALDLLAAADRQLY 498 Query: 246 VAKKSGRNRVV 256 +AK +GRNRV Sbjct: 499 LAKAAGRNRVA 509 >gi|254294194|ref|YP_003060217.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Hirschia baltica ATCC 49814] gi|254042725|gb|ACT59520.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Hirschia baltica ATCC 49814] Length = 785 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 13/169 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150 +I+ ++ D L+G+ N + F + L E++ ++ D+D FK +ND GHP Sbjct: 334 KKIAYMAHFDALTGVHNRANFSTELEKAVERMHTQGKPFALHCIDLDNFKTVNDTMGHPA 393 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL--RKIIENSQI 208 GD ++ ++ +L + VGRLGG+EF +G ++ E A+L +D+ ++E + Sbjct: 394 GDSLLKIVAHRLSMSISDGDIVGRLGGDEFMVLQMGCNDAEEAMLTSDMITDALLEPVSL 453 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR--NRV 255 S P + ++ A R E I+ AD ALY AK+ GR NR+ Sbjct: 454 MGSVLP-VSGSVGTSFAPR-DGETSKEIMQHADLALYAAKQDGRGCNRM 500 >gi|226939876|ref|YP_002794949.1| hypothetical protein LHK_00948 [Laribacter hongkongensis HLHK9] gi|226714802|gb|ACO73940.1| GGDEF domain protein [Laribacter hongkongensis HLHK9] Length = 333 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 17/183 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQ 141 ++ ++L S +++ Q + D L+GL+ F + LG + I+ DID+FK Sbjct: 135 TMREQLAQSLSQLDQANH-DALTGLMTRRIFFNQLGDWLTMNLARRGAYILMADIDHFKA 193 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND GH GD VI ++D L R GGEEF A +A +R+ Sbjct: 194 INDTHGHIAGDAVIRTVADCLRAELRADDLSCRFGGEEFCVLIPTGQTANAVAMAERIRR 253 Query: 202 IIENSQINISSGPSIHITISAGIAE---------RCHKEPISTIIYRADQALYVAKKSGR 252 EN+ + I IS G+A R ++ + ++ ADQALY AK++GR Sbjct: 254 RCENTPA-VFRDRVIPFRISIGLAPVPTEGAQGIRPDEKWVEHLLEDADQALYEAKRTGR 312 Query: 253 NRV 255 NR Sbjct: 313 NRT 315 >gi|193222219|emb|CAL60520.2| conserved hypothetical protein, putative PAS, PAC and GGDEF domains [Herminiimonas arsenicoxydans] Length = 619 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 10/159 (6%) Query: 106 IDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 ID L+ L N F++ + + +++ D+D+FK IND++GH +GD V+ Sbjct: 457 IDFLTQLPNRRYFMTRMEEELARTRRIDGARTAVLMCDLDHFKTINDSYGHAIGDLVLKH 516 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + L VGR+GGEEFA + EA I A +R + + I+ +I+ Sbjct: 517 FAVILRNALRRNDMVGRVGGEEFAVVLFDAGVAEAEIFAQRVRSQLAEIPL-IALNQNIN 575 Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S GIA I + R+D ALY AK++GRNR+ Sbjct: 576 VTVSIGIAMMHASDANIDVSLSRSDTALYRAKQAGRNRI 614 >gi|119502851|ref|ZP_01624936.1| diguanylate cyclase [marine gamma proteobacterium HTCC2080] gi|119461197|gb|EAW42287.1| diguanylate cyclase [marine gamma proteobacterium HTCC2080] Length = 403 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 11/176 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHS----AF---ISSLGSYNEKLSIVFFDIDYFKQIND 144 +L + +++ L+++D L+GL N AF +S ++++ D+D+FK ND Sbjct: 222 QLQEARKQLADLAKLDELTGLRNRRGADRAFDMEVSRAQRGGSSIAVIMIDVDHFKAYND 281 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GHP GD V+ ++ L V + R+GGEEF G+++ +A + +R I Sbjct: 282 TYGHPSGDDVLKRIAGVLRSVTARAGELAIRMGGEEFLLLLPGANQADALVAGERIRTRI 341 Query: 204 ENSQINISSGPSIHI-TISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I S+ PS I T+S G+A ++ AD+ALY +K+ GRN V Sbjct: 342 MALEIEHSASPSGSIVTVSQGVAACIPSMTTEFKQLLEAADKALYSSKEGGRNTVT 397 >gi|146311833|ref|YP_001176907.1| RNase II stability modulator [Enterobacter sp. 638] gi|145318709|gb|ABP60856.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638] Length = 663 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 18/185 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 SG+ + E + R+ L+ D ++GL N +A IS G ++ +V+ D+D Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAIHELISDSISQRGET--QVGVVYLDLDN 276 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAI 194 FK++ND +GH GD+++ ++ ++ + RLGG+EF A +S E A+ Sbjct: 277 FKKVNDAYGHMFGDQLLQSVALAILSCLDEGQVLARLGGDEFIVLATDTSQSTLEAMASR 336 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + LR+ I I +G S+ I+++ H +II AD A+Y AK+SGR + Sbjct: 337 ILTRLRQPFRIGLIEIYTGCSLGISLAPQ-----HGTDRESIIRNADTAMYTAKESGRGK 391 Query: 255 VVCFS 259 FS Sbjct: 392 FCVFS 396 >gi|310780015|ref|YP_003968347.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] gi|309749338|gb|ADO83999.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] Length = 320 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 10/171 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQIND 144 E+ S ++ +LS D L+G+ N S+ S +E+ S++ DID+FK++ND Sbjct: 141 EIEKSRKKLHELSITDELTGIYNRRFIFESIKKEISRSERNGGIYSLMLIDIDFFKKVND 200 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD+V+ ++ ++ GR GGEEF + + A + A LRK +E Sbjct: 201 LCGHLGGDEVLKNVASEIKNNIRNMDLFGRFGGEEFILLLPETDLELALLCAERLRKAVE 260 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + P +T+S G+ + E + I+ R D+ALY AK +GRNRV Sbjct: 261 SITFPKVGHP---VTVSIGVGQYSIGETLDDILDRVDKALYKAKNNGRNRV 308 >gi|194365007|ref|YP_002027617.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] gi|194347811|gb|ACF50934.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] Length = 356 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 14/173 (8%) Query: 91 KELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQI 142 +++ ++ N +++ SR D L+GL N A ++L + + DID+FK I Sbjct: 186 QDVLLAQNADLAEQSRTDALTGLPNRRAMAAALEEAVAVVDDQPGVACVALLDIDHFKHI 245 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GD+V+A L L F R GGEEF A + A + LR Sbjct: 246 NDFQGHATGDRVLAELGVLLRSHFAGRGMAARYGGEEFVAVMPSTDLHTAELQCEFLRLA 305 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + + +T+S G+A+ E + + RAD+ALY AK +GRNRV Sbjct: 306 VADLPLGFP------VTVSIGVAQHQPGESVDDTLARADKALYRAKGNGRNRV 352 >gi|83592879|ref|YP_426631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] gi|83575793|gb|ABC22344.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] Length = 764 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 14/167 (8%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + + + ++ +++++F DID FKQIND+ GH GD ++ + Sbjct: 316 DALTGLPNRQLLLDRVSTALDLARRHDRRVAVMFMDIDRFKQINDSMGHAAGDVLLKQAA 375 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS-SGPSIH 217 +L V +GRLGG+EF A G E EA LA+ +++E ++ + G ++ Sbjct: 376 SRLAAVLRPQDTLGRLGGDEFLVVAPGLRWESEATALAS---RLLEVARRPFTIDGREVY 432 Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS-DIE 262 +++S G++ ++ AD A+Y+AK GR+ F+ DIE Sbjct: 433 VSVSIGVSLGPVDGTTAQALMRNADAAMYLAKGGGRDAAHFFTPDIE 479 >gi|323947690|gb|EGB43693.1| GGDEF domain-containing protein [Escherichia coli H120] Length = 269 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + D ++GLLN F I+ G + S++ D D FK IND +GH G Sbjct: 107 QLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKG 166 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ L+ L V R GGEEF + A LA +R + ++++IS Sbjct: 167 DEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSIS 224 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 P T+S G+A E I + R D ALY AK GRNRV+ Sbjct: 225 GLPRF--TVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 268 >gi|319891748|ref|YP_004148623.1| diguanylate-cyclase (GGDEF) domain-containing protein [Staphylococcus pseudintermedius HKU10-03] gi|317161444|gb|ADV04987.1| diguanylate-cyclase (GGDEF) domain-containing protein [Staphylococcus pseudintermedius HKU10-03] gi|323465083|gb|ADX77236.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus pseudintermedius ED99] Length = 356 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 97/208 (46%), Gaps = 13/208 (6%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123 VE L L+ IS+ +L+ +L+ F R +D L+GL N F L Sbjct: 150 VEVLYLIPISMVATLVTAVFYVDLLR-FFSLIERYENEDTVDYLTGLGNVKEFDRHLNEM 208 Query: 124 ---SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 + NE+ L+++ DID FK +ND + H GD V+ +S L + R GGE Sbjct: 209 ARVAENERQSLALLLIDIDGFKDVNDAYTHHAGDAVLKQMSHLLQNYVPKKTRIFRNGGE 268 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI---AERCHKEPIST 235 EF+ S E LA +RK +E S ++ I +++S G+ HK Sbjct: 269 EFSIVLRDCSLDECVKLAESIRKAVEKSNFHLPDKIVIKLSVSIGVGYMTSESHKSQ-RK 327 Query: 236 IIYRADQALYVAKKSGRNRVVCFSDIEN 263 + AD L+VAK GRN+V+ FS I N Sbjct: 328 LFKDADDMLHVAKNEGRNQVM-FSPIIN 354 >gi|310829677|ref|YP_003962034.1| putative GGDEF domain protein [Eubacterium limosum KIST612] gi|308741411|gb|ADO39071.1| putative GGDEF domain protein [Eubacterium limosum KIST612] Length = 611 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 10/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPVGD 152 ++Q SR D L+ L N A + E FF DID FK IND +GH VGD Sbjct: 447 MNQASR-DSLTNLYNKKATEEQITFILKNERRETCCHGFFLLDIDDFKGINDTYGHGVGD 505 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++D L+ +F T VGR+GG+EFA ++ +E IL I + +I ++ Sbjct: 506 QVLRDIADCLLRLFRTSDIVGRIGGDEFAVFLRNTNTRE-DILKRARELIADFRRIPVTE 564 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + ++ +AE K+ ++ AD A+Y AK+ G+N+ + + Sbjct: 565 GQYVSCSLGVVVAENSEKD-FESLYSHADDAMYEAKRKGKNQYAVYGE 611 >gi|226954019|ref|ZP_03824483.1| two-component response regulator [Acinetobacter sp. ATCC 27244] gi|226835230|gb|EEH67613.1| two-component response regulator [Acinetobacter sp. ATCC 27244] Length = 409 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 86/176 (48%), Gaps = 15/176 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL ++S LS+ D L+GL N L + ++ ++I+ DID+FK ND Sbjct: 222 ELMRQAQQLSILSQQDALTGLANRRYLDEVLENEWKRAMRHEMPITIMMIDIDFFKLYND 281 Query: 145 NFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 GH GD + IA L + G R GGEEF + + +A I L + Sbjct: 282 TLGHIQGDQCLRRIAILLGSITSRSGD--LAARYGGEEFLLLFSMTDQDQALIQVKRLME 339 Query: 202 IIENSQIN-ISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254 ++ N IN S S H+TIS G+A + +S I RAD ALY+AK +GRN+ Sbjct: 340 LVSNIGINHPKSQISKHVTISVGVATMVPSLGDSLSEFISRADHALYIAKSNGRNQ 395 >gi|307152484|ref|YP_003887868.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] gi|306982712|gb|ADN14593.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] Length = 619 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 85/169 (50%), Gaps = 25/169 (14%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD---KVIA 156 D L+GL+N F + ++ S N ++ + D+D FK IND+ GH GD + I+ Sbjct: 193 DPLTGLVNRQVFEQRVEKALENVKSQNMTHTLGYLDLDKFKMINDSCGHVAGDHLLRQIS 252 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-----SQINIS 211 FL Q + T + RLGG+EF L +E +A LR+ +E+ Q S Sbjct: 253 FLLQQQIRSSDT---IARLGGDEFGLLLLNCPIEEGKKIAETLRQALEDFRFIWEQQRFS 309 Query: 212 SGPSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G SI + I A A+ ++T++ AD A YVAK GRNR+ FS Sbjct: 310 IGASIGLVPIDAESAD------VTTLLDTADTACYVAKSRGRNRIHTFS 352 >gi|168202276|ref|ZP_02629846.1| GGDEF domain protein [Clostridium perfringens C str. JGS1495] gi|169298703|gb|EDS80782.1| GGDEF domain protein [Clostridium perfringens C str. JGS1495] Length = 545 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%) Query: 99 RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R S+L + D L + N ++I++L + +S + D+DYFK NDN+GH GD + Sbjct: 372 RDSKLDSLKDGLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFI 431 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 + ++ L V R GGEEF G+S+ + A +++ ++N I S Sbjct: 432 LKSIASVLEKNSRKEDIVARYGGEEFCVLLKGASKYSSINYAKRIKENLDNLNIKHKYSK 491 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S H+T S GI K + I +D+ALY++K GRN D Sbjct: 492 TSDHVTFSIGIYTTYTKNDLKNAIKFSDKALYISKTRGRNTYTYLED 538 >gi|146311798|ref|YP_001176872.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638] gi|145318674|gb|ABP60821.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638] Length = 709 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 103/201 (51%), Gaps = 13/201 (6%) Query: 64 ILVENLSLVIISIT--ISLLLGYISGSILKELFISYNRISQL-SRIDCLSGLLNHSAFIS 120 I V + +LV++ I ISL+ + L + N+ +L +R D L+GL N Sbjct: 217 IWVSSTTLVLLGIMLIISLVDSHFRTQRLTDNLRQLNKQLELQARFDALTGLANRHQMDI 276 Query: 121 SLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 SL ++ +++F DID+FK IND +GH VGD+++ ++ ++ M + Sbjct: 277 SLQDCLHTSLLNKKQFAVMFLDIDHFKLINDAWGHQVGDELLINVAQRITARLVPGMTLA 336 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEP 232 RLGG+EF +++ L+ L + E + G +I++T+S G++ H E Sbjct: 337 RLGGDEFILLVPDCDDEKITTLSMTL--LDEIRRPFAIGGHAINVTLSVGVSLYPQHGET 394 Query: 233 ISTIIYRADQALYVAKKSGRN 253 + + ++AD A+Y K+ GRN Sbjct: 395 LHELKFKADAAMYHIKQEGRN 415 >gi|170725870|ref|YP_001759896.1| response regulator receiver modulated diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169811217|gb|ACA85801.1| response regulator receiver modulated diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 301 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 77/158 (48%), Gaps = 13/158 (8%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N I + S + LS++ DIDYFK +ND FGH GD V+ ++ Sbjct: 138 DQLTSLFNRHYLIEAANSKVARIKRHGGTLSLMMIDIDYFKLVNDKFGHQAGDTVLRAVA 197 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF S +A A LR +IE I G I +T Sbjct: 198 SVLSSGSRKEDVVARFGGEEFVVLLDDCSILDADDKAEQLRSLIEQL---IPEG--ISVT 252 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S GIAE E ++ RADQA+Y+AK+ GRN VV Sbjct: 253 ASFGIAELDPDGETFEHLLARADQAVYLAKEQGRNCVV 290 >gi|89092025|ref|ZP_01164980.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92] gi|89083760|gb|EAR62977.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92] Length = 384 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 15/158 (9%) Query: 109 LSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ + N AF+ + S ++ L+++F D+D FK INDNFGH GD V+ ++++ Sbjct: 226 LTRVPNRKAFMKKGQQILDDVASKSKCLTVLFVDVDDFKAINDNFGHEAGDLVLVEVANR 285 Query: 162 LVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L V FV R+GG+EFA G++ Q LA L ++ S +++ G S+ Sbjct: 286 LTVALREGDFVARIGGDEFAMIVQCPESGANSQR---LAERLLDVMNQSYEHLAEGLSVS 342 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ + E ++ +I AD+ +Y KKSG+N V Sbjct: 343 CSVGGAVFPE-EGEDLAALIRVADERMYRVKKSGKNGV 379 >gi|148549517|ref|YP_001269619.1| diguanylate cyclase [Pseudomonas putida F1] gi|148513575|gb|ABQ80435.1| diguanylate cyclase [Pseudomonas putida F1] Length = 493 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 8/160 (5%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ +D L+GL N +F + + L + D+D+FK +NDN GH GD+V+ Sbjct: 328 LATLDSLTGLHNRRSFDLLAAQALREARRDSSPLVALLIDLDHFKALNDNHGHLAGDEVL 387 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L + R GGEEF + +A +A +R+ E + + P Sbjct: 388 RQFANVLQGSLRQSDILCRWGGEEFIVLLREAEGGQAVEVAEKIRRRTEQLTFSYDNQP- 446 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T S G++ + + ++ RAD+ALY AK++GRNRV Sbjct: 447 LRLTTSIGLSSLQPGDTLHALLTRADRALYRAKQAGRNRV 486 >gi|115526694|ref|YP_783605.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] gi|115520641|gb|ABJ08625.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] Length = 780 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 14/173 (8%) Query: 99 RISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 RI L+R D L+ L N F I+ + +++F D+D FKQ+ND GHP Sbjct: 334 RIIHLARYDELTALPNRVNFRDEIERLLTIAQNRGETQPAALLFIDLDQFKQVNDTLGHP 393 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQ 207 GD+++ ++++L + ++ R GG+EF S+++AA+LA R+I++ S+ Sbjct: 394 CGDRLLCDVANRLREMLRPEDYIARFGGDEFVVFQQHLKSDEDAAVLA---RRIVDRLSE 450 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + I S GIA ++ AD ALY AK GR F D Sbjct: 451 RYVIDHHVVEIGASIGIAMTAPGIKADVLLKNADMALYRAKADGRGTYCFFRD 503 >gi|332535546|ref|ZP_08411321.1| hypothetical protein PH505_cy00160 [Pseudoalteromonas haloplanktis ANT/505] gi|332035045|gb|EGI71563.1| hypothetical protein PH505_cy00160 [Pseudoalteromonas haloplanktis ANT/505] Length = 257 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 90/173 (52%), Gaps = 22/173 (12%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN A L +NE L ++ D+D FK IND +GH GDKV+ ++ Sbjct: 91 DPLTGLLNRRAGEKRLKKALRECIKHNEHLVLMMIDLDKFKPINDTYGHEAGDKVLIEIA 150 Query: 160 DQLVVVF--GTPMFVGRLGGEEFAAAAL------GSSEQEAAILANDLRKIIENSQINIS 211 + +F M + RLGG+EF A ++Q+A L N+L++ Q++IS Sbjct: 151 HRFKTLFHEKNDMCI-RLGGDEFIVAQQIKTYDKTETQQKAIALLNELQQ-----QVSIS 204 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + + + S GIA + + +++ D+ LY K++GR +V + DI+N Sbjct: 205 NTKTCAVGASIGIAIAPYDGNELHQLMHNGDKTLYHVKETGRGKVAFYDDIKN 257 >gi|320174306|gb|EFW49461.1| hypothetical protein SDB_03188 [Shigella dysenteriae CDC 74-1112] Length = 261 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + D ++GLLN F I+ G + S++ D D FK IND +GH G Sbjct: 99 QLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKG 158 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ L+ L V R GGEEF + A LA +R + ++++IS Sbjct: 159 DEVLCALARTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSIS 216 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 P T+S G+A E I + R D ALY AK GRNRV+ Sbjct: 217 GLPRF--TVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 260 >gi|295691059|ref|YP_003594752.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC 21756] gi|295432962|gb|ADG12134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caulobacter segnis ATCC 21756] Length = 691 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 15/171 (8%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+GL N + F +S+ + E ++ D+D+FK IND GH GD Sbjct: 263 IETLAFKDPLTGLPNRALFQHRFNEAVSASETLGEMFGLIMIDVDHFKDINDTLGHDAGD 322 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 ++ L+ L F + V RLGG+EFA G + A + ++K+ E Q I Sbjct: 323 VLLKRLAGMLRRAFRSGDTVARLGGDEFAVILRGLRGE--ADMMRPIQKLQELLQRPIEY 380 Query: 212 SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259 +G S T S G A H +P + +I AD ALY AK++GRNR + F Sbjct: 381 AGRSFTATASIGAA--LHGDPEADPAHMIKNADIALYHAKEAGRNRSIVFE 429 >gi|222082594|ref|YP_002541959.1| hypothetical protein Arad_9287 [Agrobacterium radiobacter K84] gi|221727273|gb|ACM30362.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 632 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 20/168 (11%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK- 153 ++S D L+GL N A L +Y ++ + + D+D+FK+ ND +GH GD+ Sbjct: 193 RMSNTDYLTGLENRRAVDHRLRNYWKEWQANSRGFTAILVDVDFFKKYNDFYGHQEGDRC 252 Query: 154 ---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-- 208 + A + + + + G+ +GR GGEEF A S ++ A LA +R +E ++ Sbjct: 253 LIHIAASIKEAVAPLGGS---IGRYGGEEFIVLAQFSEKERVAYLAERIRSTVEQLRLLH 309 Query: 209 -NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 G S+ +T+S G A + II+ AD+ALY AK SGRN Sbjct: 310 EERRDGTSV-VTVSVGAAFTREQSGAKLEKIIHEADRALYGAKASGRN 356 >gi|18309947|ref|NP_561881.1| GGDEF domain protein [Clostridium perfringens str. 13] gi|18144625|dbj|BAB80671.1| probable sensory box/GGDEF family protein [Clostridium perfringens str. 13] Length = 545 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%) Query: 99 RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R S+L + D L + N ++I++L + +S + D+DYFK NDN+GH GD + Sbjct: 372 RDSKLDSLKDGLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFI 431 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 + ++ L V R GGEEF G+S+ + A +++ ++N I S Sbjct: 432 LKSIASVLEKNSRKEDIVARYGGEEFCVLLKGASKYSSINYAKRIKENLDNLNIKHKYSK 491 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S H+T S GI K + I +D+ALY++K GRN D Sbjct: 492 TSDHVTFSIGIYTTYTKNDLKNAIKFSDKALYISKTRGRNTYTYLED 538 >gi|126172885|ref|YP_001049034.1| diguanylate cyclase [Shewanella baltica OS155] gi|125996090|gb|ABN60165.1| diguanylate cyclase [Shewanella baltica OS155] Length = 341 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 115/254 (45%), Gaps = 37/254 (14%) Query: 32 SIFFSIFIAT---VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGS 88 S ++FI T VI +AN ++ + P + +ILV+ + +I++ S+ L ++ Sbjct: 86 SAILAVFINTGVVVIVVANGIGSFLWIYPVFASTFILVKPIEAFLINVIASIALVALANI 145 Query: 89 ---------ILKELFIS-------------YNRISQLSRIDCLSGLLNHSAFISSL---- 122 ++ L +S + + L+ +D L+G N A S + Sbjct: 146 FDVISLFSFVITILMMSMSAFVYALHGVKQFRLLETLNSVDPLTGAFNRRAMGSDMEAAL 205 Query: 123 --GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 +N K + D+DYFK +ND FGH VGD+V+ G + R GGEE Sbjct: 206 SNAKHNGVKHLLAILDLDYFKTVNDKFGHAVGDQVLKRFVAITTSHLGKNDRLYRFGGEE 265 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F SEQ+ I +LR I+ +++ IT+S G+A T + R Sbjct: 266 FVLLIPEISEQDEFI--QNLRMAIKKE---LTTPDGKEITVSFGVAPWVPGTTTDTWLQR 320 Query: 240 ADQALYVAKKSGRN 253 AD+ALY+AK+ GR+ Sbjct: 321 ADEALYLAKQQGRD 334 >gi|299531753|ref|ZP_07045155.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298720194|gb|EFI61149.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 387 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 21/214 (9%) Query: 52 YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111 ++ L F G+ ILV SLV + I LL ++G+ E RI+Q++ D L+ Sbjct: 174 FVNLASFRGV-VILV---SLVEGVMAIMLLAMSMTGT---ERHRREERIAQIAARDPLTA 226 Query: 112 LLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 L N A + S +++ DID+FKQ+ND GH GD+++ LSD + + Sbjct: 227 LDNRRALYLRAPELLRQASPASPCALLLIDIDHFKQVNDLHGHDAGDRLLVTLSDLIRGL 286 Query: 166 FGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITIS 221 RLGG+EF + G+ QE L LR+ + ++ ++ + ++I Sbjct: 287 LPHGALAARLGGDEFVILLRSVSGAVVQE---LGQSLRESFAQQARAMFATPEPVSLSIG 343 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 A + ++ E +S + RAD+ALY +K+ GR+R+ Sbjct: 344 ATLFDQSETE-LSHWLKRADEALYASKRKGRHRM 376 >gi|299770292|ref|YP_003732318.1| WspR [Acinetobacter sp. DR1] gi|298700380|gb|ADI90945.1| WspR [Acinetobacter sp. DR1] Length = 409 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 11/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL ++S LS+ D L+GL N +L + + L+I+ DIDYFK ND Sbjct: 222 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHETPLTIMMVDIDYFKAYND 281 Query: 145 NFGHPVGDKVIA-FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH GD+ + + + V R GGEEF ++ Q+A I L I Sbjct: 282 TLGHLKGDECLKEIAIAISSIAARSGDLVARYGGEEFLLLFPMTNSQQALIQVERLMNAI 341 Query: 204 ENSQI-NISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254 + I + S S +TIS G+A + + IS + RAD ALY AK +GRN+ Sbjct: 342 DKIAIKHPCSDVSPQVTISVGVATTIPRLNDSISAFVARADHALYKAKTNGRNQ 395 >gi|296450338|ref|ZP_06892097.1| probable signaling protein [Clostridium difficile NAP08] gi|296878750|ref|ZP_06902753.1| probable signaling protein [Clostridium difficile NAP07] gi|296260831|gb|EFH07667.1| probable signaling protein [Clostridium difficile NAP08] gi|296430257|gb|EFH16101.1| probable signaling protein [Clostridium difficile NAP07] Length = 395 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 30/242 (12%) Query: 41 TVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILK-ELFISYNR 99 +VI FLF P G++ I S ++ + I+ L ++S + + +F Y++ Sbjct: 154 SVIVFGGCFLFLNFFLP--GIQTIPGNEFSNIVNTFFITSLAVFVSTMLYRSRVFTYYDK 211 Query: 100 I---SQLSRIDCLSGLLNHSAFISSLGSYN-------------------EKLSIVFFDID 137 + Q I ++ LLN L N E ++ + DID Sbjct: 212 LLISQQYEEIYHINNLLNDKVMTDDLTKMNNRRYLEDILQKKLISHANQEPITGMMIDID 271 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAIL 195 YFKQ NDN+GH GD + ++ ++++ F + R GGEEF E++A + Sbjct: 272 YFKQFNDNYGHQKGDYCLQNIA-KVILDFTSSENEHAIRYGGEEFFICIFNCDEEDAKLK 330 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253 + LRKIIE P +T+S G+ + I+ I D+ALY AK+ GRN Sbjct: 331 SECLRKIIETCNFERDDIPLKCVTVSIGVYTNKIERTITLNEFISNCDKALYTAKEQGRN 390 Query: 254 RV 255 V Sbjct: 391 CV 392 >gi|268608444|ref|ZP_06142171.1| hypothetical protein RflaF_02965 [Ruminococcus flavefaciens FD-1] Length = 337 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 16/218 (7%) Query: 50 LFYI---GLTPFYGLEYILVENLS---LVIISITISLLLGYISGSILKELFISYNRISQL 103 LFY+ G F+G Y + + + ++T+ L + S ++ + S ++ + Sbjct: 124 LFYVICTGYVAFFGPIYHPDQKFAAFFWIFNAVTVFGFLIFYSRYLITSIISSQEKLIEA 183 Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSD 160 + D L+ L N + L F DID FK+IND +GH GD+V+ ++D Sbjct: 184 AHFDRLTHLYNRHYMLERLEEVPADGRESFLAMSDIDNFKKINDTYGHNGGDEVLKTVAD 243 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDLRKIIENSQINISSGPSIHI 218 ++ + + + V R GGEEF + SSE + + LRK IE+ I+ G I + Sbjct: 244 KIKNICSSCI-VARWGGEEFL---ILSSEPLPDGKDMLERLRKNIESESISFE-GQEIRV 298 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T++ G+A R + I + AD LY+ K SG+N+VV Sbjct: 299 TLTIGMAVRKSGQSIDKWVQDADNKLYIGKNSGKNKVV 336 >gi|218549280|ref|YP_002383071.1| diguanylate cyclase; GGDEF domain; PLP-dependent transferase [Escherichia fergusonii ATCC 35469] gi|218356821|emb|CAQ89449.1| Putative diguanylate cyclase; GGDEF domain; putative PLP-dependent transferase [Escherichia fergusonii ATCC 35469] Length = 570 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSA------FISS 121 L+L+ T L++ +I ++ +F+ + + + D L+ L N A F++ Sbjct: 362 LTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWHDTLTRLYNRGALFEKARFLAQ 421 Query: 122 LGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 N++ S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF Sbjct: 422 ECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIY 238 ++ +A +A +R + +I I+ ++ I+ S G++ E + Sbjct: 482 CIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD LY+AK++GRNR VC SD Sbjct: 542 LADGRLYLAKQAGRNR-VCASD 562 >gi|314936955|ref|ZP_07844302.1| GGDEF domain protein [Staphylococcus hominis subsp. hominis C80] gi|313655574|gb|EFS19319.1| GGDEF domain protein [Staphylococcus hominis subsp. hominis C80] Length = 356 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 99/201 (49%), Gaps = 12/201 (5%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLGS 124 +L+ +II I IS +L S +++ ++ +++ + D L+GL N F L Sbjct: 149 DLTELIILIPISFVLTITSAVTFVDIWHFFSLVTRYENEDKYDYLTGLGNVKEFDRHLNK 208 Query: 125 YNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 ++K L+++ DID FK +ND + H GD V+ +S L + R GG Sbjct: 209 ISQKAEIEHTSLALLLVDIDGFKDVNDTYTHKAGDAVLKQMSQLLKNYVPHQFKIFRNGG 268 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--T 235 EEF+ S ++ LA ++R +E S ++ + I +++S G+ E S Sbjct: 269 EEFSIVIFDYSLDQSVKLAENIRMAVEKSSFHLPNKEVIKLSVSIGVGYLSPDEYKSQRK 328 Query: 236 IIYRADQALYVAKKSGRNRVV 256 + AD ++VAKK GRN+V+ Sbjct: 329 VFKDADDMVHVAKKEGRNQVM 349 >gi|218663332|ref|ZP_03519262.1| putative kinase/esterase protein [Rhizobium etli IE4771] Length = 588 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 7/158 (4%) Query: 107 DCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GLLN +F +L K++++ D+D+FK+IND FGH VGD V++ +S L Sbjct: 162 DHLTGLLNRRSFDCALSELARQESVKVALLHIDVDHFKEINDRFGHAVGDLVLSHVSKIL 221 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + RLGG+EFA + + + +++ +E S + + I + S Sbjct: 222 LEAISAGDVAARLGGDEFAVVITEDECDKTIAVLDQIQRRLE-SPLPVGDQTLI-VPCSI 279 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G+A + + ++ ++D ALY AK++GRNR FSD Sbjct: 280 GVASAMSAD-FARLLSQSDLALYHAKRNGRNRAEIFSD 316 >gi|170751167|ref|YP_001757427.1| diguanylate cyclase/phosphodiesterase [Methylobacterium radiotolerans JCM 2831] gi|170657689|gb|ACB26744.1| diguanylate cyclase/phosphodiesterase [Methylobacterium radiotolerans JCM 2831] Length = 785 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 10/169 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + RI++L+ D L+ L N A + L + + ++ D+D FKQ+ND +GH VGD Sbjct: 362 AQRRIAELAFCDPLTKLANRRALSARLEHDFTPKRVVKLLLIDLDRFKQVNDTYGHVVGD 421 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ ++++L + G FV RLGG+E A G Q A+ + + I+ Sbjct: 422 QLLIQVANRLRTIAGPDGFVARLGGDEMAVLVYGDQTQAMAVATAVIEALALPYGID--- 478 Query: 213 GPSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVVCFS 259 + ++I I C + I + +D ALY +K+ GR R C++ Sbjct: 479 --DLTVSIGCSIGLCCTDDAQDAIELMQFSDIALYESKRQGRGRTSCYT 525 >gi|168207242|ref|ZP_02633247.1| GGDEF domain protein [Clostridium perfringens E str. JGS1987] gi|170661381|gb|EDT14064.1| GGDEF domain protein [Clostridium perfringens E str. JGS1987] Length = 299 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 4/129 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSS 188 +++ DID FK++ND + H VGDK++ + L + ++GR GGEEF ++ Sbjct: 172 TVIMTDIDSFKKVNDTYSHLVGDKILRDFAKVLNNNIRENSDWIGRYGGEEFIIVLNNTN 231 Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVA 247 + +A LRKIIE +++ G S+ IT S G+ E KE I AD+ LY+A Sbjct: 232 LKNGVKVAEKLRKIIE--KMSFDYGDLSLKITSSFGVCEVSEKEDPFDTIKNADEKLYMA 289 Query: 248 KKSGRNRVV 256 K +GRN+ V Sbjct: 290 KMTGRNKTV 298 >gi|118476310|ref|YP_893461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus thuringiensis str. Al Hakam] gi|118415535|gb|ABK83954.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus thuringiensis str. Al Hakam] Length = 569 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|94263614|ref|ZP_01287424.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93456034|gb|EAT06185.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 570 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 14/163 (8%) Query: 107 DCLSGLLNHSA------FISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GL NH+A +S N L + D+D+FK++ND +GH GD+V+ L+ Sbjct: 401 DAMTGLYNHTAGKEHLNLATSTAQRNGSPLCLAIIDVDWFKKVNDTYGHATGDQVLITLA 460 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK---IIENSQINISSGPSI 216 L T V R GGEEF A G A + +++R+ IE + + Sbjct: 461 RLLKQRLRTTDIVCRFGGEEFGAILPGCDLPTAQRIMDEMRQSYAAIEFRADEV----TF 516 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 H + S G+A + + AD +LY AK GRNRVV ++ Sbjct: 517 HSSFSCGVASIADCDGPVELWKAADMSLYAAKNGGRNRVVTWT 559 >gi|27367815|ref|NP_763342.1| GGDEF family protein [Vibrio vulnificus CMCP6] gi|27359388|gb|AAO08332.1| GGDEF family protein [Vibrio vulnificus CMCP6] Length = 639 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 15/179 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQIND 144 S+ +EL R++ ++ D L+GL N S SL + +++ ++F D+D FK +ND Sbjct: 466 SVEREL----KRLNYVANHDPLTGLANRSHAFQSLQTEHDQGKDQYLLFLDLDGFKAVND 521 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 FGH +GD ++ ++ +L V RL G+EF ++A + +I+E Sbjct: 522 QFGHAIGDDLLRVVAKRLKNSVFNRDLVARLAGDEFLIGI-----RDAHTYVPVVERILE 576 Query: 205 NSQINIS-SGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSD 260 Q IS G +T S G++ K+ + I+ AD+A+YVAK+ G+N+ C D Sbjct: 577 QLQQPISIDGCLCDVTASIGVSHWAVKDGASLEERIHHADEAMYVAKRLGKNQYCCLQD 635 >gi|84625443|ref|YP_452815.1| hypothetical protein XOO_3786 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369383|dbj|BAE70541.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 165 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK++ND FGH GD+V+ ++ + F + R GGE F G A Sbjct: 24 DIDHFKRVNDTFGHLYGDEVLLLVAQLMQRAFRQHDLLFRFGGEAFVIVVRGVDRDTAVS 83 Query: 195 LANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 L LR + P + +T+S GI E H IS ++ AD+ALY AK+ GRN Sbjct: 84 LFERLRLAVAQHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQHGRN 138 Query: 254 RVVCFSDI 261 R ++++ Sbjct: 139 RAALYAEL 146 >gi|307137662|ref|ZP_07497018.1| putative diguanylate cyclase [Escherichia coli H736] Length = 264 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 15/161 (9%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND GHPVGD+VI + + Sbjct: 97 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTRGHPVGDQVIKTVVNI 156 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF + A LA +R+ +E N + I + Sbjct: 157 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ--KV 214 Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 I+I A + + P IYR AD ALY AK++GRN+VV Sbjct: 215 TISIGAVVTQENALNPNE--IYRLADNALYEAKETGRNKVV 253 >gi|322419913|ref|YP_004199136.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] gi|320126300|gb|ADW13860.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] Length = 311 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 11/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEK-LSIVFFDIDYFKQIND 144 EL + + + D L+GL NH I LG EK +SI+ D+D FK IND Sbjct: 127 ELLAAREVLRHKASHDSLTGLWNHEEIIGILGQELARAKREEKCVSIIMADLDRFKVIND 186 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD V+ + ++ ++GR GGEEF + AA A LR + Sbjct: 187 TYGHMAGDVVLRSTALKMHSTMRHYDYIGRYGGEEFLVILPECCLECAAAFAERLRLRVC 246 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255 ++ G I +TIS G+A + + +++ AD ALY AK+ GRNRV Sbjct: 247 RDLVDTPEG-MIPVTISLGVASSATGQQMPDAESLVKAADAALYQAKEHGRNRV 299 >gi|95931451|ref|ZP_01314156.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95132497|gb|EAT14191.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 661 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S+L+R+D L+G+ N F +L S E+L I+ DID+FK ND +GH GD Sbjct: 491 LSELARVDALTGIANRREFDQTLSSLWKSSYRKKERLGILMIDIDHFKFYNDQYGHQKGD 550 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + + + P F+ R GGEEF ++ +A +A +++ I I Sbjct: 551 NCLQQVVQAICQSCLRPEDFIARYGGEEFIVLLPQTAHDDAVHVAKRIQQKIAEKAIAHQ 610 Query: 212 SGPSIH-ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 P+ IT+S G+ + S I AD+ LYVAK +GRN+ +C D Sbjct: 611 KSPTKPVITLSIGVCSMIPHDLSSEQQFIDCADRRLYVAKNNGRNQ-ICDQD 661 >gi|78047539|ref|YP_363714.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035969|emb|CAJ23660.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 973 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 14/159 (8%) Query: 107 DCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN S + ++ ++ E L++V D+D+FKQ+ND GH VGD V+A + Sbjct: 809 DALTGLLNRSGILEAMAEELQGCAHGEHPLAVVLIDLDHFKQVNDEHGHLVGDAVLAKVG 868 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216 +L VGR GGEE G S+Q + LR I E I + + + Sbjct: 869 ARLTACLRDSDKVGRYGGEELLLLLPGMSQQS----QHRLRAIHEALSIAPYEVGAARPL 924 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G++ + ++ + RAD+ALY AK+SGRNR+ Sbjct: 925 QVTCSVGVSWFRVGDTAASQLARADEALYRAKRSGRNRI 963 >gi|327194331|gb|EGE61191.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 567 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 9/159 (5%) Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GLLN +F +L G + K++++ D+D+FK+IND FGH VGD V+ +S L Sbjct: 142 DHLTGLLNRRSFDFALSELAGQESVKVALLHIDVDHFKEINDRFGHAVGDLVLCHVSKIL 201 Query: 163 VVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + RLGG+EFA ++ A+L + R++ S + + I + S Sbjct: 202 LEAISAGDVAARLGGDEFAVVITEDECDRTIAVLDHIQRRL--ESPLPVGDQTLI-VRCS 258 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G+A + + ++ ++D ALY AK++GRNR FSD Sbjct: 259 IGVASAMSAD-FARLLSQSDLALYHAKRNGRNRAEIFSD 296 >gi|83312701|ref|YP_422965.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1] gi|82947542|dbj|BAE52406.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1] Length = 598 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 19/178 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+G+ N AF +LG + LS++ D+D+FK ND++GH G Sbjct: 417 RLRHLAMNDGLTGIANRRAFDETLGQEWRRASRAGTPLSLLMIDVDHFKAYNDHYGHQAG 476 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209 D+ + ++ L P V R GGEEF S+ +A LA +R I ++ + Sbjct: 477 DECLKAVAATLAATAKRPADLVARYGGEEFGVILPSSTLADAQALAEKMRLAIARLELPH 536 Query: 210 ISSGPSIHITISAGI-----AERCHKEP-----ISTIIYRADQALYVAKKSGRNRVVC 257 +S +TIS G+ AE P +I AD ALY AK +GRNRV Sbjct: 537 EASQTEKTVTISIGVSCLNLAESPGALPRNGLDTQILIAHADNALYRAKTTGRNRVTA 594 >gi|329903038|ref|ZP_08273350.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327548516|gb|EGF33182.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 307 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 13/205 (6%) Query: 69 LSLVIISITISLLL--GYISGSILKELFISYNRISQLSRI---DCLSGLLN----HSAFI 119 L VI+++T+ L++ G + L + ++ Q D L+GL N H+ + Sbjct: 104 LQWVIVALTLPLMVSVGTQVRKLRAALKTTRRQLQQFEEKAIRDELTGLYNRRHLHTELV 163 Query: 120 SSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 +++ +++ + D+D+FK IND GH VGD ++ + +GR G Sbjct: 164 AAIARADQQGIPFCLCLIDVDHFKDINDRHGHLVGDVILREFAQVARDSIRDSDVIGRYG 223 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTI 236 G+EF + + A + A LR + P I++S G+A+ E ++ + Sbjct: 224 GDEFMQILPDTDLKGAVMHAERLRVYAHFLDLQ-GVLPPHAISLSIGVAQYRPAETVTAL 282 Query: 237 IYRADQALYVAKKSGRNRVVCFSDI 261 I RAD ALY AK+ GRNRV DI Sbjct: 283 IERADTALYRAKERGRNRVEWIDDI 307 >gi|302189850|ref|ZP_07266523.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 685 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 227 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 283 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 284 LFMDLDGFKQINDALGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 343 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 344 QAAKIAEKLIERVSGRRQVD---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 399 Query: 248 KKSGRNR 254 K++GR + Sbjct: 400 KRAGRQQ 406 >gi|300863525|ref|ZP_07108477.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] gi|300338481|emb|CBN53619.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] Length = 300 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 81/162 (50%), Gaps = 16/162 (9%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GL N + I + L I+ DIDYFK+ ND FGH GD V+ LS Sbjct: 137 DPVTGLFNRRYLKEFLTREIERSTQAQQSLGIIMLDIDYFKRFNDTFGHDAGDLVLQELS 196 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIH- 217 L V R GGEEF SS ++A A LR+ + Q+N+ +G S+ Sbjct: 197 LFLQRCVHNSEIVCRYGGEEFVLVLPESSLEDAYQRAEQLRQGV--KQLNVKYNGQSLDV 254 Query: 218 ITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVV 256 IT+S G+A C H + + I AD ALY AK GR+RV+ Sbjct: 255 ITVSLGVA--CFPEHGKTGAEAIQAADVALYRAKAKGRDRVI 294 >gi|300783187|ref|YP_003763478.1| diguanylate cyclase [Amycolatopsis mediterranei U32] gi|299792701|gb|ADJ43076.1| diguanylate cyclase [Amycolatopsis mediterranei U32] Length = 412 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 16/182 (8%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 ++K+L ++ +R D +GL N S + +++ ++ D+D+FKQ Sbjct: 237 LVKQLEVAAHR-------DEKTGLYNTSGWHALAERTLAATARARGTFGLLMLDLDHFKQ 289 Query: 142 INDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND +GH GD V+ ++ ++ V G VGR GGEEF G ++ + +A +R Sbjct: 290 VNDTYGHLAGDAVLKAVAQSIISAVRGRGDAVGRFGGEEFVVLLPGITQPDIGAVAERIR 349 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + I ++ +++S GIA + ++ AD ALY AK +GRN+VV + Sbjct: 350 RAISALRVPAGQLSITGLSVSIGIAVYPTAGASLQRLLDAADTALYHAKATGRNKVVHVA 409 Query: 260 DI 261 D+ Sbjct: 410 DL 411 >gi|296108287|ref|YP_003619988.1| Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Legionella pneumophila 2300/99 Alcoy] gi|295650189|gb|ADG26036.1| Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Legionella pneumophila 2300/99 Alcoy] Length = 835 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 22/189 (11%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDID 137 I G+ + L + N + L+R D L+ + N F L EK L+++ D+D Sbjct: 390 IYGTDITPLKNTQNAMLNLTRRDTLTQIANRQYFEEKLIEKIYEHHLKEKSLALLLIDLD 449 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK +ND GHP GDK++ +++++ F+ RLGG+EF + A +A Sbjct: 450 NFKIVNDTLGHPTGDKLLMAVTNRMTRCLRANDFIARLGGDEFIVLLDQCNTDTAVKVAE 509 Query: 198 DLRKIIENSQINISSGP----SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250 + IN+ P H+TI+A I + E S ++ AD A+Y +KK+ Sbjct: 510 KI--------INVLGKPFQFDEYHMTITASIGIAIYPETSEIASDLLKYADIAMYQSKKT 561 Query: 251 GRNRVVCFS 259 G+N+ FS Sbjct: 562 GKNKCTVFS 570 >gi|264677129|ref|YP_003277035.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262207641|gb|ACY31739.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 352 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 11/183 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFK 140 ++ EL ++ +++++ +D L+GL+N A I++ + L+++ D+D+FK Sbjct: 159 TVSAELHLANQKLNEMVELDALTGLVNRRGLDRMLHAEIAAARRESRPLTLMLCDLDHFK 218 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND +GH GD+ + + L V P R GGEEFA + + A L Sbjct: 219 HFNDTYGHVQGDECLKQVGRLLREVCVRPRDIAARYGGEEFAMILPNTPRSGSMTFARAL 278 Query: 200 RKIIENSQINIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 ++++ +I + I +T+S GI E S +++ RAD+ALY AK GRNR Sbjct: 279 GQMLKFLKIRPPGAAEDIPLTLSGGITTCIPDEHTSAESMLMRADEALYAAKSQGRNRFF 338 Query: 257 CFS 259 F Sbjct: 339 SFE 341 >gi|251790708|ref|YP_003005429.1| diguanylate cyclase [Dickeya zeae Ech1591] gi|247539329|gb|ACT07950.1| diguanylate cyclase [Dickeya zeae Ech1591] Length = 241 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 107 DCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ + N SA I + E+ +++ DID+FKQ+ND +GHP GD VI L ++ Sbjct: 84 DPLTDVFNRSAIIDLVDHALEQEQAALIVLDIDHFKQVNDAYGHPTGDAVICALIARIRE 143 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 + +GR+GGEEF G + A +A + + ++ + P +T S G+ Sbjct: 144 LLQGKGSIGRVGGEEFTILLDGYTLMAAVDIAEHIHASLNHTALE--PLPEYQVTASFGV 201 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + AD ALY AK GRNRV Sbjct: 202 SWAPPHTSFDMLYGTADAALYRAKHQGRNRV 232 >gi|253701124|ref|YP_003022313.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Geobacter sp. M21] gi|251775974|gb|ACT18555.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Geobacter sp. M21] Length = 869 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 27/193 (13%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 + E ++ RI L+ D ++ L N + ++ LG ++ +L+++F D+D FK I Sbjct: 422 MNEQELNEQRIEYLAHYDTVTKLPNRFSLMARLGQALELAKRFSSRLAVIFIDLDRFKNI 481 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRK 201 ND+ GH +GD+++ ++ +L + V RLGG+EF L +S A A+ +RK Sbjct: 482 NDSLGHHIGDRLLFQVAGRLQDTIRSADIVARLGGDEFVVVLPLINSNISA---AHAVRK 538 Query: 202 I---------IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 I +E+ ++NI+ PSI I++ E + ++ AD A+Y AK +GR Sbjct: 539 IQQTLSQGYTVESHELNIT--PSIGISVYP-----TDGETVQELMKNADLAMYHAKSAGR 591 Query: 253 NRVVCFSDIENNT 265 N F+ N T Sbjct: 592 NSYQFFTQEMNLT 604 >gi|153216703|ref|ZP_01950578.1| chemotaxis protein [Vibrio cholerae 1587] gi|124114153|gb|EAY32973.1| chemotaxis protein [Vibrio cholerae 1587] Length = 605 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 12/158 (7%) Query: 107 DCLSGLLNHSAFISSL--------GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 D L+GL N ++F S NEK I DID FK IND++GH GD ++ Sbjct: 445 DFLTGLPNRNSFFQHAELIFNLLNNSVNEKDNTCIAILDIDKFKDINDSYGHVYGDSILK 504 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++D L F + R+GGEEF ++ A + R+IIE N+S ++ Sbjct: 505 QMADLLSKQFRDIDILARMGGEEFIILLKATNLPLAFKIIERCREIIEKHSFNLSD-ETV 563 Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 ++TISAG+A+ + + + I+ AD LY +K+ GRN Sbjct: 564 NLTISAGLAQFSKEYKTLDEWIHAADCKLYESKRCGRN 601 >gi|86749290|ref|YP_485786.1| putative GAF sensor protein [Rhodopseudomonas palustris HaA2] gi|86572318|gb|ABD06875.1| diguanylate cyclase with GAF sensor [Rhodopseudomonas palustris HaA2] Length = 812 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 12/161 (7%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N +AF ++ L E ++ D+D FKQ+ND FGHP GD+++ Sbjct: 645 LAHHDLLTGLANRAAFDETVETAVARLQRNGEPFTLFMLDLDRFKQVNDTFGHPAGDQLL 704 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAILANDLRKIIENSQINISSG 213 + +L + RLGG+EFA G+ + + A LA + ++I SQ G Sbjct: 705 REAAQRLRSSVRKTDILARLGGDEFAIVQFGAGDRFKAAKGLAERIVRLI--SQPFDLGG 762 Query: 214 PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 + + IS GIA + ++ AD ALY K GRN Sbjct: 763 AQVSVGISIGIAIAPHAATDAAALLKMADVALYAVKSEGRN 803 >gi|320450268|ref|YP_004202364.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Thermus scotoductus SA-01] gi|320150437|gb|ADW21815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Thermus scotoductus SA-01] Length = 549 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 8/155 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ L+ D L+ LLN AFI L S NE ++ + D+D FK +ND GH VGD + Sbjct: 129 KLEHLATYDPLTQLLNRRAFIEKVEGELISVNEGRALAYIDLDRFKMVNDLLGHQVGDSI 188 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +A L +L VGR+GG+EFAA ++E EA L I N +I++ P Sbjct: 189 LAELGRRLQAALPQ-AIVGRMGGDEFAAWYPAAAESEAKAKGKLLLDAI-NMEIHVQGQP 246 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248 +H+ S G+A H +S ++ RAD A+Y AK Sbjct: 247 -VHLEGSMGVALFPDHGATLSELLRRADLAMYRAK 280 >gi|302523746|ref|ZP_07276088.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302432641|gb|EFL04457.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 901 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 7/165 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 R++ + D L+ L N + + L + E +++F D+D FK IND+ GHPVGD+V+ Sbjct: 480 RLAHEATHDPLTRLANRTLVLDRLDRRDGAESAAVLFLDLDKFKLINDSLGHPVGDQVLR 539 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINISSGPS 215 ++L G VGRLGG+EF ++ + + A LR ++ S+ G Sbjct: 540 IAGERLRRATGPDDVVGRLGGDEFVVVTSATTGPAQVGVFAAHLRSVL--SEPVSVHGRQ 597 Query: 216 IHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +H+ S GI E + ++ AD A+Y AK GR R F Sbjct: 598 LHLDASMGIVLVEPDDRRTAEDLLRDADVAMYQAKSRGRGRFEFF 642 >gi|186474211|ref|YP_001861553.1| diguanylate cyclase [Burkholderia phymatum STM815] gi|184196543|gb|ACC74507.1| diguanylate cyclase [Burkholderia phymatum STM815] Length = 603 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 11/181 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 + L + + L+ D L+GL N F+ L E+L+++F D++ FKQI Sbjct: 397 MDALHSKQHELVHLASHDGLTGLPNRMLFMQKLEEAIDRARVTGERLAVLFIDLNRFKQI 456 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRK 201 ND +GH VGD V+A ++ +L V V RLGG+EF G EAA ++A + + Sbjct: 457 NDQYGHSVGDDVLAIVAGRLRQVLHAGDLVARLGGDEFIVLVKGERSAEAAPVIAARIVR 516 Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I++ ++ I P + + S GI++ + ++ AD A+Y AK G + + + Sbjct: 517 TIDD-ELLIGDQP-MAVGASIGISQFPSDGDSAEALLLNADAAMYAAKSGGSGAWLSYRE 574 Query: 261 I 261 + Sbjct: 575 L 575 >gi|116694068|ref|YP_728279.1| signal transduction protein [Ralstonia eutropha H16] gi|113528567|emb|CAJ94914.1| predicted signal transduction protein containinga membrane domain, an EAL and a GGDEF domain [Ralstonia eutropha H16] Length = 1085 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 91/169 (53%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+GL N + A + S+ E+++++ D+D+FK IND+ GHPVGD Sbjct: 639 IRHLALHDPLTGLPNRAELSERAQALLLYARSHGERVALLLLDLDHFKHINDSLGHPVGD 698 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211 V+ ++D+L V R+GG+EF G + EA ++A ++ + N ++ + Sbjct: 699 DVLRTMADRLKGAVRQGDLVARMGGDEFGVVLGGLRHDSEAELIAAKIQARV-NEELQ-A 756 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 G + +T S G+A + ++ ++ AD A+Y AK GR ++ F+ Sbjct: 757 GGQRLRVTPSIGMAIYPDDGDSLTELLKAADSAVYAAKHDGRAQLCRFA 805 >gi|91779457|ref|YP_554665.1| diguanylate cyclase [Burkholderia xenovorans LB400] gi|91692117|gb|ABE35315.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 524 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 15/212 (7%) Query: 55 LTPFYGLEYIL-VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 L P++ +I V L+ + + +S LL L++ + + +L+ D L+GL Sbjct: 301 LAPWWHRNWITAVLTLTFGAVFVMVSWLLSLA----LRDKLRAQAALVRLAATDPLTGLG 356 Query: 114 NHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVV 165 N + L + LS +F DID+FKQ ND +GH GD+ + +++ + V Sbjct: 357 NRRVLDTRLDEEWRRARRSGQPLSALFIDIDHFKQFNDAYGHASGDEALVAVAECISAAV 416 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 V R GGEEFA +S + A +A +R+ ++ + G S +T+S G A Sbjct: 417 RRWVDVVARYGGEEFAVILPDTSAEGALKVAEKIRRKVQGQDVIHGDGESATVTVSVGCA 476 Query: 226 ERCHKE--PISTIIYRADQALYVAKKSGRNRV 255 E ++ AD+ LYVAK +GRNRV Sbjct: 477 TCVPAEGANALDLLAAADRQLYVAKAAGRNRV 508 >gi|24215404|ref|NP_712885.1| two-component response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45657180|ref|YP_001266.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196523|gb|AAN49903.1| two-component response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45600418|gb|AAS69903.1| GGDEF family protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 409 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 11/168 (6%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I ++S++D L+GL N F+ Y L+++ D+DY K+IND++GH G Sbjct: 222 QIEKISKVDELTGLYNRRYLIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAG 281 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + +SD + R+GG+EF +++ L +LR + +++ Sbjct: 282 DLSLRTISDVMKQRVRATDICSRIGGDEFCILLDAIKKEDLVQLCENLRMEVAEKELSYR 341 Query: 212 S--GPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 + G + IT+S G E S I + D ALY +KK GRNRV Sbjct: 342 TQKGSPVKITVSIGACIFGPGEEFSFDDIYHSIDSALYESKKKGRNRV 389 >gi|27365080|ref|NP_760608.1| GGDEF family protein [Vibrio vulnificus CMCP6] gi|37680868|ref|NP_935477.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|320155463|ref|YP_004187842.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] gi|27361226|gb|AAO10135.1| GGDEF family protein [Vibrio vulnificus CMCP6] gi|37199617|dbj|BAC95448.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|319930775|gb|ADV85639.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] Length = 362 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 12/165 (7%) Query: 98 NRISQLSRIDCLSGLLNHSA---FISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVG 151 +++ LS D ++G LN F+ +++ SI DID+FKQ+ND +GH VG Sbjct: 171 SKLRYLSTRDVMTGALNRHQLDLFLQRALDGHKRYTASSIAIIDIDFFKQVNDRYGHDVG 230 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINI 210 D+VI + + + + RLGG+EF +S A ++ + L +K+ + + Sbjct: 231 DEVINLVVETIQHNTREVDLLFRLGGDEFLLLFENTSASSALLIVSHLCQKVRKQAYPKH 290 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S +T+SAGIAE + + + + RAD ALY +K++GR+RV Sbjct: 291 AS-----VTLSAGIAECLEGDDVESWLKRADVALYQSKENGRDRV 330 >gi|312879045|ref|ZP_07738845.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM 12260] gi|310782336|gb|EFQ22734.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM 12260] Length = 626 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 15/159 (9%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F+ L E+L ++F D+D+FK+IND+ GH VGD+++A ++ Sbjct: 463 DALTGLPNRPLFLDRLDQALARAERTGERLGVLFMDLDHFKEINDHLGHLVGDRILAEVA 522 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHI 218 +L V R+GG+EF G E A A +I+E + + ++ + Sbjct: 523 LRLKETLRAQDTVARMGGDEFTFLLPGLGRPEDAERAAG--RILEAFRAPFVLEDTAVSV 580 Query: 219 TISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNR 254 T S GIA E H ++ RAD ALY AK GRNR Sbjct: 581 TASLGIALFPE--HGTGTLDLMRRADLALYQAKSRGRNR 617 >gi|289623525|ref|ZP_06456479.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649808|ref|ZP_06481151.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867720|gb|EGH02429.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 523 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 18/178 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQIND 144 EL I+ N + ++ D L+ + N F ++L S N ++I+ DID+FKQ ND Sbjct: 328 ELNIARNELEIIAHTDSLTHMANRRCFDAALQQEWARASRNTATIAIILLDIDWFKQYND 387 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199 +GH GD + Q+ + G + R GGEEF + A +A + Sbjct: 388 TYGHLQGDDCL----KQVAGLIGNSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKI 443 Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R +E ++I S+ P +TIS+G+ K+ + + AD+ LY+AK GRNRV Sbjct: 444 RSSVETNRIEHSASPLGKLTISSGVVSINAAEKDGHTAALAEADRLLYLAKTKGRNRV 501 >gi|269964362|ref|ZP_06178604.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus 40B] gi|269830859|gb|EEZ85076.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus 40B] Length = 786 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 30/256 (11%) Query: 29 IYFSIFFSIFIA---TVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLL 82 ++ + FS +A T+ I + Y+ L P L+ L E N I + + + Sbjct: 257 VWLELAFSFGVAAFFTITLIILVLYRYV-LRPVSRLDKQLNELESNQRDNIEKLETNDEI 315 Query: 83 GYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFD 135 G +S + +EL + Y + +L+ D L+ L N F L S ++ L +V+ D Sbjct: 316 GRLSARFFDMYEELNVIYKKTKRLAETDHLTQLANRHRFHELATRELISPSQFLWVVYVD 375 Query: 136 IDYFKQINDNFGHPVGDKVIAFLS-------DQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +D FK +ND +GH +GD ++ S +L + +P F RL G+EF A L SS Sbjct: 376 LDNFKYVNDKYGHELGDNLLKVFSSHIKDACQKLSHDYNSPCFAARLSGDEF--AILLSS 433 Query: 189 EQEAA----ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243 QE +LA++L K I N + S+ S +T S GIA+ I+ ++ AD A Sbjct: 434 NQEVKRLPDLLASELLKPISNLSSSWSN--SFPVTASVGIAQYPQDGTDIAKLLSSADAA 491 Query: 244 LYVAKKSGRNRVVCFS 259 +Y AK++G+N+ +S Sbjct: 492 MYQAKRAGKNQYAYYS 507 >gi|238758370|ref|ZP_04619548.1| hypothetical protein yaldo0001_2590 [Yersinia aldovae ATCC 35236] gi|238703493|gb|EEP96032.1| hypothetical protein yaldo0001_2590 [Yersinia aldovae ATCC 35236] Length = 534 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 10/157 (6%) Query: 104 SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 ++ D ++GL N ++L + S + DID+FK IND++GH VGD+VI L+ Sbjct: 380 AQTDPMTGLYNRRGLATTLEPISQLGQHFSAIALDIDHFKMINDSYGHDVGDEVIKQLAL 439 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 Q+ + R GGEEF G S A +A+ LR +E I ITI Sbjct: 440 QIRDSSRDTDILCRSGGEEFLMLLPGISRDVAGQVASRLRHNVETMVI----ADVRPITI 495 Query: 221 SAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A + + P + +AD+ALY AK+ GRNRV Sbjct: 496 SLGVAHWDGENGSP-EDALKQADEALYRAKQQGRNRV 531 >gi|226357522|ref|YP_002787262.1| metal dependent phosphohydrolase [Deinococcus deserti VCD115] gi|226319513|gb|ACO47508.1| putative metal dependent phosphohydrolase [Deinococcus deserti VCD115] Length = 1251 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 8/159 (5%) Query: 105 RIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 R D L+G+ N ++ E+ L+I+ DID+FKQIND F HPVGD+V+ Sbjct: 1093 REDALTGVYNRRFIEENVTIEYERHRNSGQPLAILMVDIDHFKQINDRFSHPVGDEVLRR 1152 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++ +GR GGEEF S+ ++AA +A +R IE + + Sbjct: 1153 VARIFRETCRANDLIGRYGGEEFLFLLPNSNVRQAAEVAERIRSNIEKYAWH-EIHEDLR 1211 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S GI + +I AD LY AK GRNRVV Sbjct: 1212 VTLSLGICADTNVVNHEKMISIADAKLYEAKTGGRNRVV 1250 >gi|330888918|gb|EGH21579.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 504 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 18/178 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQIND 144 EL I+ N + ++ D L+ L N F ++L S N ++I+ DID+FKQ ND Sbjct: 309 ELNIARNELEIIAHTDSLTHLANRRCFDAALQQEWGRASRNTATIAIILLDIDWFKQYND 368 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199 +GH GD + Q+ + G + R GGEEF + A +A + Sbjct: 369 TYGHLQGDDCL----KQVAGLIGNSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKI 424 Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R +E + I S+ P +TIS+G+ K+ + + AD+ LY+AK GRNRV Sbjct: 425 RSSVETNHIEHSASPLGKLTISSGVVSINAAEKDGHTAALAEADRLLYLAKTKGRNRV 482 >gi|317471248|ref|ZP_07930613.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901295|gb|EFV23244.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 348 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 3/197 (1%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISS 121 +IL+ ++ I + + +S ++ ++ NR +S L+ D L+GLL+ AF+ Sbjct: 150 WILIFSICACFTIILYAAVSSKLSAAVSRQELQDENRSLSTLANYDQLTGLLSRHAFLKR 209 Query: 122 LGSYNEKLSI-VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ V DID FK +ND +GH GDK+++ ++ + G + V R GGEEF Sbjct: 210 AEHCQASSAVLVLSDIDDFKVVNDTWGHSCGDKILSETAELIRSFLGGNVDVCRWGGEEF 269 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 + ++ + +L + +HIT++ G++ II A Sbjct: 270 VFLFRDTPLKDVLVKLQELCDTVAGHTF-CCDDKKLHITMTFGVSPSGEGASPEEIIALA 328 Query: 241 DQALYVAKKSGRNRVVC 257 D+ +Y K G+NRVVC Sbjct: 329 DRQMYKGKTEGKNRVVC 345 >gi|242278960|ref|YP_002991089.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens DSM 2638] gi|242121854|gb|ACS79550.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens DSM 2638] Length = 436 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 22/173 (12%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + + +D L+G+ N F +++ G Y EKL+++F D++ FK++ND +GH GD Sbjct: 270 LQEKATLDALTGIPNRYLFFDRLEKSVANAGRYGEKLALLFIDLNDFKRVNDQYGHHAGD 329 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILAND----LRKIIENSQ 207 V+A ++ +L + RLGG+EF S++E+ A +A+D L + E Sbjct: 330 MVLAKVAARLKSRLRSADTFARLGGDEFCVLLERPSDRESIARVADDFINCLTEPFEFDD 389 Query: 208 INISSGPSIHITI--SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + S G SI I+I G+ EP ++ +ADQA+Y K+ ++R CF Sbjct: 390 VQCSIGASIGISIYPENGV------EP-EGLVKKADQAMYRVKEQ-KDRKYCF 434 >gi|191172446|ref|ZP_03033987.1| inner membrane protein YcdT [Escherichia coli F11] gi|190907330|gb|EDV66928.1| inner membrane protein YcdT [Escherichia coli F11] Length = 409 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 13/160 (8%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 239 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 298 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF + A LA +R+ +E N + I + Sbjct: 299 IGKSIRPDDLLARVGGEEFGVLLTEIDTECAKALAERIRENVERLTGDNPEYAIPQ--KV 356 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I+I A + ++ P I AD ALY AK++GRN+VV Sbjct: 357 TISIGAVVTQKNELNP-KEIYQLADNALYEAKETGRNKVV 395 >gi|134293662|ref|YP_001117398.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis G4] gi|134136819|gb|ABO57933.1| diguanylate cyclase with PAS/PAC sensor [Burkholderia vietnamiensis G4] Length = 517 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 11/167 (6%) Query: 96 SYNRISQLSRIDCLSGLLN----HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFG 147 + I L+R D L+GL N H+A L + L++++ D+D FK IND G Sbjct: 334 TEQHIRHLARHDALTGLPNRHELHAALKRMLSQRPRLPSPALAVMYLDLDGFKSINDRCG 393 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+ ++++L R+GG+EF A ++ E+++LA + I ++ Sbjct: 394 HQAGDEVLMQVAERLARALPPGALAARVGGDEFIVALDDTTMHESSLLATRIIGQI-SAP 452 Query: 208 INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 +S G ++ + IS GIA + H P +I +AD ALY AK +G+ Sbjct: 453 YTLSIGVTVSLGISIGIALDDGHGNP-DELIRQADSALYDAKSAGKG 498 >gi|71906691|ref|YP_284278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71846312|gb|AAZ45808.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 585 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 17/222 (7%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYN-----RISQLSRIDCLSGLL 113 Y L + + +L I+ + ++G + S+ L IS RI +L+ D L+GL Sbjct: 106 YELTGLRKDGSTLPIMVLGSPSVIGGLPASVGTVLDISAQKAAEQRIRELADYDVLTGLP 165 Query: 114 NH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N +++ +++++F D+D+FK++ND+ GH VGD+++ ++ +L V Sbjct: 166 NRRLLRERFEQLLAAAEREKSEIAVIFLDLDHFKRVNDSLGHSVGDELLCEVARRLDSVV 225 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIA 225 + RLGG+EF A G A +A R+++E S+ +G + +T S GI+ Sbjct: 226 RRIDTLARLGGDEFIFAMPGFHTAAAVEVA---RRLVEVFSRPFEVAGHELTVTPSLGIS 282 Query: 226 ERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 H + T++ AD A+Y AK+ GRN +S N T Sbjct: 283 IYPHDGRDLETLLRNADTAMYRAKEMGRNAFQFYSSEMNTTT 324 >gi|42779774|ref|NP_977021.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] gi|42735691|gb|AAS39629.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] Length = 568 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|54298631|ref|YP_125000.1| hypothetical protein lpp2695 [Legionella pneumophila str. Paris] gi|53752416|emb|CAH13848.1| hypothetical protein lpp2695 [Legionella pneumophila str. Paris] Length = 835 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 22/189 (11%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDID 137 I G+ + +L + N + L+R D L+ + N F L EK L+++ D+D Sbjct: 390 IYGTDITQLKNTQNAMLNLTRRDTLTQIANRQYFEEKLIEKIYEHHLKEKSLALLLIDLD 449 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK +ND GHP GDK++ +++++ F+ RLGG+EF + A +A Sbjct: 450 NFKIVNDTLGHPTGDKLLMAVTNRMTRCLRANDFIARLGGDEFIVLLDQCNTDTAVKVAE 509 Query: 198 DLRKIIENSQINISSGP----SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250 + IN+ P H+TI+A I + E ++ AD A+Y +KK+ Sbjct: 510 KI--------INVLDKPFQFDDYHMTITASIGIAIYPETSEIARDLLKYADIAMYQSKKT 561 Query: 251 GRNRVVCFS 259 G+N+ FS Sbjct: 562 GKNKCTVFS 570 >gi|89095154|ref|ZP_01168079.1| sensor histidine kinase [Oceanospirillum sp. MED92] gi|89080585|gb|EAR59832.1| sensor histidine kinase [Oceanospirillum sp. MED92] Length = 376 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 27/189 (14%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDY 138 S+ E I+ + +LS ID L+ + N +F +S G Y+ L+ +F D+D+ Sbjct: 178 SVCIENCINQENLHRLSSIDMLTKVHNRRSFEQEIVRELSRASRGGYH--LACLFLDLDH 235 Query: 139 FKQINDNFGHPVGDKVIA----FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 FK +NDNFGH GD+V+ FL+ QL V R GGEEFA + A Sbjct: 236 FKMVNDNFGHQTGDRVLRTVGLFLNKQLRKT----DIVARYGGEEFAVLLPNCDKAGALE 291 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA-------ERCHKEPIS-TIIYRADQALYV 246 +A LR+ + + +T S G++ + H + +S +I AD+A+Y Sbjct: 292 IAEGLRQKLSKLIFRDEASKPFRMTTSVGVSLCKPDEYPKAHLDDVSYQLIQSADKAVYH 351 Query: 247 AKKSGRNRV 255 +K +GR+RV Sbjct: 352 SKHNGRDRV 360 >gi|327193425|gb|EGE60324.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 735 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDN 145 +L + R+ LS D L+GL N F+ + S ++L ++ D+D FK+IND Sbjct: 293 KLVRARQRLEHLSLHDALTGLPNRR-FVDQMISQPPRPDPQDRLILIHIDLDRFKEINDT 351 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIE 204 GH GD V+ + +L + G R+GG+EF A+ + E +AA LA R+I++ Sbjct: 352 KGHAGGDMVLQTTASRLADLTGPNDVAARIGGDEFVFASWSTDPEPKAAELA---RQIVD 408 Query: 205 NSQINI-SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 Q I G + S G+A + + ++ AD ALY AKK+GR R F++ Sbjct: 409 ALQRTIFIDGAGYVVGASVGVAWETKSARDRDLGQLLLNADLALYEAKKAGRGRAAVFTE 468 >gi|315646150|ref|ZP_07899270.1| diguanylate cyclase with GAF sensor [Paenibacillus vortex V453] gi|315278349|gb|EFU41665.1| diguanylate cyclase with GAF sensor [Paenibacillus vortex V453] Length = 663 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 10/130 (7%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ DID FK +ND FGH GDK++ +S + R GGEE A G Sbjct: 530 SLIVVDIDEFKLVNDTFGHQRGDKILKQVSSIVKSTIRHSDIPARWGGEELAVYLPGLGI 589 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHKEPISTIIYRADQALYV 246 Q+A +A +R + ++ +T+S G++E K + ++ YRAD ALY Sbjct: 590 QQAVQVAERIR-------LRVAEETDPRVTVSCGVSEWNWTNDKISVESLFYRADMALYE 642 Query: 247 AKKSGRNRVV 256 AK SGRNR+V Sbjct: 643 AKNSGRNRIV 652 >gi|302342228|ref|YP_003806757.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfarculus baarsii DSM 2075] gi|301638841|gb|ADK84163.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfarculus baarsii DSM 2075] Length = 966 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI+ + D L+GL N F I+ L+++F D+D FK IND+ GH VG Sbjct: 532 RITHQAYHDALTGLPNRQLFNDRLAMAIAQAHRGGHGLALLFLDLDNFKNINDSLGHAVG 591 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ ++ +L V RLGG+EF G+S+ + + R+I+++ + Sbjct: 592 DMLLQAVAQRLTRWLREEDTVARLGGDEFVMLIQGASDPD--YIMQVARRILDSMSQPFA 649 Query: 212 SGP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 GP +++T S G+ H T++ AD A++ AK GRN + F+ N Sbjct: 650 VGPHELYVTASIGVTIHPHDGHDAQTLVANADLAMFRAKDEGRNNIKLFTPAMN 703 >gi|300310777|ref|YP_003774869.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] gi|300073562|gb|ADJ62961.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] Length = 352 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 39/203 (19%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------------NEKLS-------- 130 +F +Y + S D L+GL N F Y +E+ Sbjct: 142 VFCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAPHEAHSMEQDERRHDSAEAQDD 201 Query: 131 ------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + DID+FKQ+ND +GH GD+V+ +++ L F + + R GGEEF Sbjct: 202 EPKGHWLAVVDIDHFKQVNDRYGHLYGDEVLILVANILRASFRSHDRIFRFGGEEFVILL 261 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSG--PSI-HITISAGIAERCHKEPISTIIYRAD 241 ++ +D RKI + + N+ P + +T+S G + P+ I+ AD Sbjct: 262 RSTT-------LSDARKIFDRFRQNVQEYDFPQVGKVTVSLGFVGIARETPV-VILGHAD 313 Query: 242 QALYVAKKSGRNRVVCFSDIENN 264 QALY AKK+GRNR+ + ++ N+ Sbjct: 314 QALYHAKKTGRNRICYYQELVNS 336 >gi|66044410|ref|YP_234251.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63255117|gb|AAY36213.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 748 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 21/167 (12%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N + ++ L S E+ +++F D+D FK +ND+ GH GD+++ ++ Sbjct: 320 DELTSLFNRAYLMNELTTAFETRKSRYERATVLFLDLDGFKVVNDSMGHLAGDQLLKGVA 379 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214 ++L + + R+GG+EFA +G + E A+ K+ E SQ+N + G Sbjct: 380 NRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAV------KMAERIVSQLNTAIQIEGQ 433 Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I I+ S GI A H +P ++ AD A+Y AKK GR R F+ Sbjct: 434 DIFISCSIGIVSAGESHTKP-EELLRDADVAMYSAKKQGRGRWSIFN 479 >gi|58617050|ref|YP_196249.1| response regulator PleD [Ehrlichia ruminantium str. Gardel] gi|58416662|emb|CAI27775.1| Putative regulatory component of sensory transduction system [Ehrlichia ruminantium str. Gardel] Length = 461 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 12/160 (7%) Query: 107 DCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+G N H+ SL ++ +S++ DID+FK++ND FGH +GD+++ Sbjct: 297 DPLTGCFNRRYFDMHFHNMITESLCK-DKTISLMILDIDHFKEVNDTFGHTIGDELLRQF 355 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +++ + R GGEEF + A + ++ + S G IH Sbjct: 356 KNRVSDNIRITDLLARFGGEEFVIVLPDTDINTAYQTGLRILSLVGETPFKTSIG-DIHK 414 Query: 219 TISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256 T+S GI E H + I +I RAD+ LY AK +GRN++V Sbjct: 415 TVSIGITEMSHSDINNIKQLIDRADKCLYEAKNTGRNKIV 454 >gi|313496735|gb|ADR58101.1| Diguanylate cyclase [Pseudomonas putida BIRD-1] Length = 427 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 124/280 (44%), Gaps = 37/280 (13%) Query: 1 MTRSLKDFLSIWLCHEKNLESFSPHTF---MIYFSIFFSIFIATVI--FIANIFLFYIGL 55 + +S + L WL E + H + + +F +FI V+ A L L Sbjct: 141 LQQSYPEALLTWLA-EIRWPALHGHWMSLIQMVYPLFLGVFILLVVQYLRAPRPLHAAQL 199 Query: 56 TPFYGLEYILVENLSL-VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 G+ ++L + L ++I S ++ I+ ++ E + Q++ D L+GL Sbjct: 200 IGLLGIFWMLPQTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPG 252 Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 A + I D+D+FK+ ND GH VGD+V+ ++ +L V R Sbjct: 253 RRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASRLSKV-TGGGRAYR 311 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPS 215 GGEEFA G + E +R++I N +++ S+G + Sbjct: 312 YGGEEFALVFAGKTAAECVPHVEAVREVIANYVMHLRDQHNRPQDDTAGRQRRAGSTGGT 371 Query: 216 IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRN 253 + +TIS G+AER H+ P ++ ADQALY AK +GRN Sbjct: 372 VSVTISIGVAERQADHRNP-EAVLKSADQALYSAKGAGRN 410 >gi|295093268|emb|CBK82359.1| diguanylate cyclase (GGDEF) domain [Coprococcus sp. ART55/1] Length = 365 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 12/181 (6%) Query: 86 SGSILKELFISYNR-ISQLSR--IDCLSGLLNHSAFISSLGSYNEKLS-------IVFFD 135 + ++++ + SYNR ++ +S +D ++GL N +F SL E + + FD Sbjct: 184 TKALMESIAGSYNRQVTLMSELMVDPMTGLYNRRSFEESLDKEIENVEQTGAKSYVTIFD 243 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK++ND +GH GD VI L + R GGEEF + + Sbjct: 244 IDHFKEVNDTYGHSNGDIVIKALCKMMKEKSKDMGLAFRYGGEEFVILFHDVELSKVMNV 303 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 D+R + + I T S G+AE E RAD ALY AK+SGRNR Sbjct: 304 VEDIRTEFRCYYFHFMNKDGI--TCSCGVAEYTKGESSKAWFNRADSALYKAKESGRNRT 361 Query: 256 V 256 V Sbjct: 362 V 362 >gi|269959755|ref|ZP_06174134.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835509|gb|EEZ89589.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 414 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 24/176 (13%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 QL+ D L+ + + A L K +I D+D+FK+ ND +GH GD V+ ++ + Sbjct: 236 QLAFTDSLTLIPSRRALDLELKHMGRKFTIAMLDVDHFKKFNDTYGHDTGDDVLKMVASR 295 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII---------------ENS 206 L+ G V R GGEEF G ++ ++R++I +N Sbjct: 296 LMKTQGGAK-VYRFGGEEFTIVFKGKYTEDCEAHLEEVRELIAQYEMILRDQDTRPDDNK 354 Query: 207 QINISSG------PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 Q G ++ +T S G+A+ R + P + +I AD+ALY AKK+GRN V Sbjct: 355 QGRKKRGSADSKKKTVSVTASFGVADSRSARNP-ADVIKLADEALYKAKKAGRNCV 409 >gi|254509373|ref|ZP_05121459.1| ggdef family protein [Vibrio parahaemolyticus 16] gi|219547699|gb|EED24738.1| ggdef family protein [Vibrio parahaemolyticus 16] Length = 411 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 24/202 (11%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDID 137 IS ++ +SG IL +S + +L+ D L+ + A + L K +I DID Sbjct: 214 ISSMMFSLSGVILLIYLLSASY--ELAFKDLLTDIPGRLALETDLKYLGRKYTIAMIDID 271 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK ND +GH GD V+ ++ ++ V G + R GGEEF G +A Sbjct: 272 HFKAFNDTYGHDTGDDVLRLVASKMKHVGGGAR-IYRYGGEEFTVLFKGKWADQARDHLE 330 Query: 198 DLRKIIENSQINI--------------------SSGPSIHITISAGIAERCHKEPISTII 237 LR IE+ ++ + +G + ITIS G+ + + ++ Sbjct: 331 ILRASIESYEMVLRDQDTRPKDHKAGQKKRKGSKNGDVVTITISIGVCDSRETSEVKAVM 390 Query: 238 YRADQALYVAKKSGRNRVVCFS 259 AD+ALY AKKSGRN+ VC S Sbjct: 391 KCADEALYRAKKSGRNQ-VCLS 411 >gi|152992432|ref|YP_001358153.1| hypothetical protein SUN_0838 [Sulfurovum sp. NBC37-1] gi|151424293|dbj|BAF71796.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 392 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 23/178 (12%) Query: 96 SYNRISQLSRI----------DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYF 139 ++++++QL+ + D L+GL S F L +EKL + DID F Sbjct: 221 TFSKVTQLNEVNQTLKNKIDHDPLTGLYRKSFFDIKL---HEKLDERKEAVLAIIDIDDF 277 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+INDN+GH VGD V+ +D + R GGEEF + + + Sbjct: 278 KKINDNYGHLVGDMVLLEFTDLIRKNMRANDLFARWGGEEFLILFECTDTGKIVKKIEQI 337 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 R+IIE H+T S G++ + + +++ RAD ALY+AKK+G+N++V Sbjct: 338 RQIIEKHPFKTIG----HLTASFGLSTSLKNDTLESLLERADSALYIAKKTGKNKLVV 391 >gi|126667495|ref|ZP_01738466.1| GGDEF domain protein [Marinobacter sp. ELB17] gi|126628087|gb|EAZ98713.1| GGDEF domain protein [Marinobacter sp. ELB17] Length = 147 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 70/145 (48%), Gaps = 14/145 (9%) Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT----PMFVG 173 + + E LS++ DID+FK +ND GH VGD V+ V+F V Sbjct: 1 MVKKAKAAGEPLSVIALDIDHFKAVNDKHGHHVGDSVLV----DTAVIFQQYSQDGDLVA 56 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEP 232 + GGEEF L + EA A +R+ ++ +G + IT+S G+AE E Sbjct: 57 QFGGEEFVTLLLCADHAEARSCAERIRE-----GVDAGNGLDVRITVSIGVAEVNTAMES 111 Query: 233 ISTIIYRADQALYVAKKSGRNRVVC 257 + RAD+ALY AK GRN V C Sbjct: 112 VENAFSRADKALYQAKALGRNHVCC 136 >gi|126658584|ref|ZP_01729731.1| response regulator receiver domain protein (CheY-like) [Cyanothece sp. CCY0110] gi|126620171|gb|EAZ90893.1| response regulator receiver domain protein (CheY-like) [Cyanothece sp. CCY0110] Length = 335 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 33/197 (16%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQIN 143 EL +Y + Q++ D L+G+ N + I ++G Y SI+ DID FK IN Sbjct: 137 ELIKAYKEMQQIAATDELTGIANRRS-IFNIGKQEFERSQRYKSPFSILMIDIDKFKSIN 195 Query: 144 DNFGHPVGDKVIAFL-------------------SDQLVVVFGTPMFVGRLGGEEFAAAA 184 D +GH VGD+ + + ++ + G +GRLGGEEF Sbjct: 196 DTYGHDVGDEALKMMVKITLNCLRKVDHIGRLETEEEALAKKG---HLGRLGGEEFVVIL 252 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243 ++ + A A + + + + + ++ IT+S GI K + I I+ RAD A Sbjct: 253 PHTNLKGAYKAAQRVCEAMPQETLQVEDK-TVSITVSIGIGTYDPKDQKIDDILKRADLA 311 Query: 244 LYVAKKSGRNRVVCFSD 260 L+ AKK+GRNRV + Sbjct: 312 LFAAKKNGRNRVAIMHE 328 >gi|160901332|ref|YP_001566914.1| diguanylate cyclase [Delftia acidovorans SPH-1] gi|160366916|gb|ABX38529.1| diguanylate cyclase [Delftia acidovorans SPH-1] Length = 386 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 16/189 (8%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLS---I 131 S+ + + ++++L ++ LSRID L+ L + + ++L Y + + + Sbjct: 155 SVFSSWSTRQLVRKLARQNVKLQVLSRIDPLTTLYSRDYWWQKARAALRDYRQTQASACL 214 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + DID+FK+IND+FGH VGD+V+ + + + GR GG+EFA + + + Sbjct: 215 LIVDIDHFKRINDSFGHTVGDEVLQAIGLTIRHCLRSHDAAGRYGGDEFAVLCMHTQLDD 274 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYVA 247 A +A +R + SQ+ + P + ++ S G+A +P + I AD ALY A Sbjct: 275 AYAVALRIRNQL--SQLRVREHPQLRVSASIGVAA---ADPSFLSVKDWINAADSALYSA 329 Query: 248 KKSGRNRVV 256 K +GR++V+ Sbjct: 330 KDAGRDQVI 338 >gi|73541425|ref|YP_295945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia eutropha JMP134] gi|72118838|gb|AAZ61101.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia eutropha JMP134] Length = 663 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 11/182 (6%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYF 139 G+ + + +++++ S D L+G+ N + A+ + S + +I D+D F Sbjct: 210 GADVTKWAQKLHQLTEQSLTDPLTGVGNRALIRNRVEAYFTGDASQRGRFAIALMDLDGF 269 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND+ GH +GD ++ LS +LV + V RLGG+EF S +EAA+ L Sbjct: 270 KKINDSLGHEIGDILLKELSQRLVATVRSRDTVARLGGDEFVILLDDVSSEEAAV--GML 327 Query: 200 RKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +I+ + +G + +T S G+A +E + ++ RAD+A+Y AK G NR Sbjct: 328 EQIMRVCRQPFHLAGCQVRVTTSIGLAFASGVRETDAQLLRRADRAMYEAKAQGNNRYCL 387 Query: 258 FS 259 +S Sbjct: 388 YS 389 >gi|77359897|ref|YP_339472.1| hypothetical protein PSHAa0951 [Pseudoalteromonas haloplanktis TAC125] gi|76874808|emb|CAI86029.1| putative orphan protein; putative conserved domain [Pseudoalteromonas haloplanktis TAC125] Length = 1002 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 15/169 (8%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 S ++ QL+ D L+GL N + F ++ G Y ++ +FD+D FK+IND Sbjct: 562 SQRKMEQLAYFDTLTGLANRTFFRMQLRKSMALAERGHY--AFALFYFDLDEFKRINDTL 619 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIEN 205 GH GD+++ ++++L + RLGG+EFA G QE A +AN ++K + N Sbjct: 620 GHNAGDQLLVEVANRLKQRLRAEDTIARLGGDEFAILLSGIEHQEHATQVANTIQKTL-N 678 Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 I + S I I+ S GI + + ++ AD A+Y AK GRN Sbjct: 679 EPIQLGSNEVI-ISASIGITMAPYDSQEEDQLLKHADLAMYEAKAKGRN 726 >gi|145219683|ref|YP_001130392.1| diguanylate cyclase [Prosthecochloris vibrioformis DSM 265] gi|145205847|gb|ABP36890.1| diguanylate cyclase [Chlorobium phaeovibrioides DSM 265] Length = 413 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 19/181 (10%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 L E+FI+ D +GL N+ F + + ++I DID+FK+ Sbjct: 235 LDEIFIT----------DEKTGLFNYRHFKEHLIIDVERAKRFRTSVTIAMIDIDHFKRY 284 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GD+V+ L+ + + R GGEEFA + A +++ LRKI Sbjct: 285 NDANGHIAGDRVLEILAGIIRKQSRSSDIPSRFGGEEFAILFPNTDTHTAREISDRLRKI 344 Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFSD 260 I + P+ +T+S GIA P T+I AD+ALY AK GRN VV F + Sbjct: 345 ISAEPFPHEDDQPTGELTVSIGIATFPDDAPDWYTLINNADRALYEAKAKGRNNVVAFHE 404 Query: 261 I 261 + Sbjct: 405 L 405 >gi|331641567|ref|ZP_08342702.1| inner membrane protein YcdT [Escherichia coli H736] gi|331038365|gb|EGI10585.1| inner membrane protein YcdT [Escherichia coli H736] Length = 254 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 15/161 (9%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND GHPVGD+VI + + Sbjct: 87 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTRGHPVGDQVIKTVVNI 146 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF + A LA +R+ +E N + I + Sbjct: 147 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ--KV 204 Query: 217 HITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 I+I A + + P IYR AD ALY AK++GRN+VV Sbjct: 205 TISIGAVVTQENALNPNE--IYRLADNALYEAKETGRNKVV 243 >gi|291614988|ref|YP_003525145.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291585100|gb|ADE12758.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 935 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 19/169 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI L+ D L+GL N +S + K++++F D+D+FK IND+ GH VG Sbjct: 505 RIQYLANYDVLTGLPNRYLLNDRLEQGLSLAQRHQTKVAVMFIDLDHFKNINDSLGHDVG 564 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAI----LANDLRKIIEN 205 D ++ +S +L + R GG+EF A LG +SE E + + LR+ E Sbjct: 565 DALLKMVSQRLKGCLRRSDTIARQGGDEF-VALLGDLNSEDEVTFVCEKMLHSLREEFEV 623 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 ++ ++S G SI ++I E + ++ AD A+Y AK +GRNR Sbjct: 624 AEYHLSVGTSIGVSIYPDDGETSVQ-----LLRNADLAMYRAKDAGRNR 667 >gi|225862602|ref|YP_002747980.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] gi|225789508|gb|ACO29725.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] Length = 567 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|330964101|gb|EGH64361.1| response regulator/GGDEF domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 334 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + +I +I Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMKIPHI 284 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 + P +T+S GIA + + + +I AD+ LY+AK +GRN+V Sbjct: 285 APVPGSSLTVSIGIATVTPQVGLHSRQLILDADKGLYLAKNNGRNQVAA 333 >gi|289675202|ref|ZP_06496092.1| GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 216 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 47 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIREQSQLSMLMIDVDYFKPYNDNFGHLEGD 106 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + I +I Sbjct: 107 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHI 166 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 + P +T+S G+A + + + +I AD+ LY AK +GRN+V Sbjct: 167 APVPGSSLTVSIGVATMTPQVGMQSRQLILDADKGLYQAKNNGRNQVAA 215 >gi|167590663|ref|ZP_02383051.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Burkholderia ubonensis Bu] Length = 577 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 16/191 (8%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFK 140 +S SI+ + RI +L+ D L+GL N + F++ L ++ ++++F D+D FK Sbjct: 316 LSWSIVTRQAEAEARIHELAHHDSLTGLPNRATFLAEFDACLRRSDKVIALLFIDLDGFK 375 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDL 199 IND GH GD+V+ ++++L P M +GR+GG+EFA + +A Sbjct: 376 LINDARGHSAGDEVLRQVAERLRGQCPEPGMMLGRIGGDEFAVLM---RDTDADGAMGAA 432 Query: 200 RKIIENSQINISSGPSIHITISAGIAERC-----HKEPISTIIYRADQALYVAKKSGRNR 254 ++++ + P I A I C H ++ RAD ALY AKK+G+ Sbjct: 433 ARLVDTLVAPYAPSPDRQFRIGASIG--CVLAPHHGNDAGVLLSRADMALYAAKKAGKGT 490 Query: 255 VVCFS-DIENN 264 FS D+E + Sbjct: 491 YRMFSPDMETS 501 >gi|158337002|ref|YP_001518177.1| EAL domain-containing protein [Acaryochloris marina MBIC11017] gi|158307243|gb|ABW28860.1| EAL domain protein [Acaryochloris marina MBIC11017] Length = 608 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 12/185 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYN------EKLSIVFFDIDYFKQIND 144 +L ++ + +L+ +D L+ + N F L +N + LS++ D+D+FK ND Sbjct: 156 QLAVANLELERLAAVDSLTRVYNRRRFDEVFLTEWNRLLREEKPLSLIMCDVDHFKAYND 215 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD + ++ + V P V R GGEEF + A +A +R + Sbjct: 216 TYGHQAGDLCLEKIAQTIAKVAKRPADCVARYGGEEFVVVLPNTDISGATHVAEAIRGAV 275 Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV-VCFS 259 N + S+ P S IT+S G+A + E I S +I AD+A+Y AK+ GR+R+ V ++ Sbjct: 276 HNLNLPHSTSPISNRITLSLGVACQVPDEAIAPSLLIEAADRAMYTAKEGGRDRMQVHYA 335 Query: 260 DIENN 264 D N Sbjct: 336 DCAVN 340 >gi|53804660|ref|YP_113668.1| response regulator [Methylococcus capsulatus str. Bath] gi|32401163|gb|AAP80771.1|AF525283_3 MmoQ [Methylococcus capsulatus] gi|53758421|gb|AAU92712.1| response regulator [Methylococcus capsulatus str. Bath] Length = 634 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 14/174 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL + R+ ++ D L+GL N + L +++ LSI+ D+D+FK IND Sbjct: 460 ELAAANRRLELMAHTDQLTGLPNRRYAMDRLEREWAQARTFDRPLSIMMLDLDWFKSIND 519 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH GD+ + + + T V R+GGEEF ++ A A +R +E Sbjct: 520 SLGHDAGDQALVHAARVMRETVRTSDVVCRMGGEEFLIIIPDTAGPAAIQTAERVRSAVE 579 Query: 205 NSQ---INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 Q + +S +T S G+A+ + ++ +AD ALY K++GRN V Sbjct: 580 QQQPAKLKLSRP----LTASIGVADSTSAPSLKDLLLKADNALYQVKQNGRNGV 629 >gi|332140385|ref|YP_004426123.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550407|gb|AEA97125.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 518 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 76/167 (45%), Gaps = 20/167 (11%) Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 SR D L+ L N A+ L S L++ DID+FK IND FGH GDK + Sbjct: 353 SRTDPLTRLPNRQAYNERLETAYTRFKSNGHSLAVAVVDIDHFKSINDRFGHATGDKTLQ 412 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-- 214 +S L FV R GGEEF L +E D+ K + + +++ P Sbjct: 413 VVSKFLKQSLSENDFVARWGGEEF-VMLLPDAE------MADIDKKLNEVRTKLAAMPFK 465 Query: 215 --SIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVC 257 + I+A C + ++ RAD+ LY AK+SGRN VV Sbjct: 466 FKQEKVKITASFGATCFGQDDTTESVFERADEYLYKAKRSGRNLVVT 512 >gi|330951409|gb|EGH51669.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7] Length = 712 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVV 310 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 311 LFMDLDGFKQINDALGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVEITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426 Query: 248 KKSGRNR 254 K++GR + Sbjct: 427 KRAGRQQ 433 >gi|320105919|ref|YP_004181509.1| diguanylate cyclase [Terriglobus saanensis SP1PR4] gi|319924440|gb|ADV81515.1| diguanylate cyclase [Terriglobus saanensis SP1PR4] Length = 424 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 26/183 (14%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D L+GL N + L + +S + DID+FK +ND GH GD Sbjct: 232 LQRVASRDALTGLNNRHTYDLRLQELFADTIANPRPISAIMVDIDHFKILNDTHGHLFGD 291 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE------- 204 +VI ++ + F R GGEEF ++E+ A I+A +R ++E Sbjct: 292 RVIRRVATLVSEALRAETDFAARFGGEEFVVLLDDTNEEHALIVAERIRTLVEIAGSPAY 351 Query: 205 -----NSQINISSGP--SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNR 254 S +++ P S+ T+S G+A + P+ +I RADQALY AK GRNR Sbjct: 352 DTDLRRSSRFVANRPPASLLTTVSCGVATVIPNKNDHPMD-LIARADQALYRAKSEGRNR 410 Query: 255 VVC 257 V C Sbjct: 411 VCC 413 >gi|302388360|ref|YP_003824182.1| diguanylate cyclase [Clostridium saccharolyticum WM1] gi|302198988|gb|ADL06559.1| diguanylate cyclase [Clostridium saccharolyticum WM1] Length = 371 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 14/165 (8%) Query: 105 RIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 ++D +GL N F + L E+ L++ D+D FK++ND +GH GD+V+ Sbjct: 209 KLDPFTGLYNRGTFDACLTGMVEECRYENSCLTLAVIDVDKFKRVNDVYGHAAGDRVLLH 268 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 LS L + R+GGEEFA G +EA + +++R I+E+S +N Sbjct: 269 LSQILKSNQTEDIKAFRIGGEEFAILLKGYHVKEAYRICDEMRTIMESSSLN--QIDRRI 326 Query: 218 ITISAGIAERCHK-EPI--STIIYRADQALYVAKKSGRNRVVCFS 259 IT S G+A C +P ++ AD ALY AK +GRN +V ++ Sbjct: 327 ITFSCGLA--CTDIQPAGPEALLRAADVALYEAKNNGRNCIVIYA 369 >gi|300867867|ref|ZP_07112508.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506] gi|300334103|emb|CBN57684.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506] Length = 717 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 17/175 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKL-SIVFFDIDYFKQIND 144 EL +S +R+ + D L+GL N F SL S ++L +++F D+D FK IND Sbjct: 544 ELLLSEDRLRYQAYHDDLTGLPNRQLFHESLSVSIKQASVKDQLVALLFLDLDGFKLIND 603 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203 + GH VGD ++ ++++L + RLGG+EF G + +AA +A + I Sbjct: 604 SLGHDVGDLLLKGVAERLKGCLRGSDTISRLGGDEFTVILPGIPGKPDAARVAEKILDAI 663 Query: 204 ENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNR 254 +Q+ + G SI +T S GI+ + KE T+I AD A+Y AK+ G+NR Sbjct: 664 --TQVFLLDGNSIAVTTSIGISLYPLDGQDKE---TLIKNADAAMYRAKELGKNR 713 >gi|218440501|ref|YP_002378830.1| diguanylate cyclase [Cyanothece sp. PCC 7424] gi|218173229|gb|ACK71962.1| diguanylate cyclase [Cyanothece sp. PCC 7424] Length = 902 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 13/175 (7%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147 I + ++ D L+GL N + L +K LS++ DIDYFK ND +G Sbjct: 724 IEFEQLYFFFNFDSLTGLFNRRRYDEKLQKAWDKCKQEQKPLSLILADIDYFKIYNDTYG 783 Query: 148 HPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 H VGD K IA + + + +F V R GGEEF+ ++++ +A + ++ Sbjct: 784 HLVGDECLKKIAQMLKKSINIFDDLPIVARYGGEEFSIILPEYGQEKSIQVAKKIMNELQ 843 Query: 205 NSQINISSGP-SIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 +I SS P S ++T+S GIA + S ++ ADQALY AK GRNR + Sbjct: 844 LLKITYSSSPLSDYMTLSLGIACTIPNKNSSPDRLLSVADQALYRAKVEGRNRFI 898 >gi|104781427|ref|YP_607925.1| sensory box protein [Pseudomonas entomophila L48] gi|95110414|emb|CAK15122.1| putative sensory box protein [Pseudomonas entomophila L48] Length = 703 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 13/177 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQIND 144 E ++ +I ++ D L+GL N + F L G + KL+ D+D FK IND Sbjct: 263 EELAAHAQIHHMAHHDALTGLPNRTLFHERLKQALLRGEDDGKLTAALCLDLDNFKNIND 322 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GDK++ L +L + RLGG+EFA G +EAA ++ +++IE Sbjct: 323 TQGHAFGDKLLRALGKRLRRELREHDTLARLGGDEFAVVLSGLDSREAA--SSTAQRLIE 380 Query: 205 N--SQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I S+ ++I A H + + Y AD ALY AK++GRNR CF Sbjct: 381 AICPPFQIEGHQFSVGVSIGVATAPDDHDQAEQLLGY-ADMALYEAKRNGRNRFECF 436 >gi|91200104|emb|CAJ73147.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 286 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 11/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N+ ++R D L+G+ N F I + + LS+ + DID FKQ+ND GH Sbjct: 114 NKEKSMARNDFLTGVANRRFFYEIATKEIERIARFIHPLSLAYIDIDNFKQVNDTLGHSA 173 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDK++ ++ + + V RLGG+EFA ++ Q A N LR + + ++ Sbjct: 174 GDKLLQVVAGTIKENIRSIDTVSRLGGDEFALLMPETNAQSAITALNKLRHALLD-MVHE 232 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ P +T S G+ ++ +I AD +Y K SG+NR+ Sbjct: 233 NNWP---VTFSIGLVTCSESCKLNELIKEADNLMYTIKASGKNRI 274 >gi|26987111|ref|NP_742536.1| GGDEF domain-containing protein [Pseudomonas putida KT2440] gi|24981740|gb|AAN66000.1|AE016229_1 GGDEF domain protein [Pseudomonas putida KT2440] Length = 400 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 37/283 (13%) Query: 1 MTRSLKDFLSIWLCHEKNLESFSPHTF---MIYFSIFFSIFIATVI--FIANIFLFYIGL 55 + +S + L WL E + H + + +F +FI V+ A L L Sbjct: 114 LQQSYPEALLTWLA-EIRWPALHGHWMSLIQMVYPLFLGVFILLVVQYLRAPRPLHAAQL 172 Query: 56 TPFYGLEYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 G+ ++L + L ++I S ++ I+ ++ E + Q++ D L+GL Sbjct: 173 IGLLGIFWMLPQTFILPFTLNIMCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPG 225 Query: 115 HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 A + I D+D+FK+ ND GH VGD+V+ ++ +L V G R Sbjct: 226 RRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASRLSKVTGG-GRAYR 284 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-------------------SSGPS 215 GGEEFA G + E +R++I N +++ S+G + Sbjct: 285 YGGEEFALVFAGKTAAECVPHVEAVREVIANYVMHLRDQHNRPQDDTAGRQRRAGSAGGT 344 Query: 216 IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 + +TIS G+AER H+ P ++ ADQALY AK +GRN V+ Sbjct: 345 VSVTISIGVAERQADHRNP-EAVLKSADQALYSAKGAGRNCVM 386 >gi|332187765|ref|ZP_08389499.1| diguanylate cyclase domain protein [Sphingomonas sp. S17] gi|332012115|gb|EGI54186.1| diguanylate cyclase domain protein [Sphingomonas sp. S17] Length = 619 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL N A + + +++ DID+FK+IND GH GD+V+ + L+ Sbjct: 413 DPLTGLFNRRALLDQAIGRSGPQTLILADIDHFKRINDTLGHDEGDEVLRGFALALIDTL 472 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 R+GGEEFA A E +L LR + + +++ + + G+ Sbjct: 473 PPGTLAARIGGEEFALLADVDHAPEPEVLLQRLRAAAYPAGLKVTAS----LGLCTGM-- 526 Query: 227 RCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 H E +YR ADQAL+ AK +GR+R C++ Sbjct: 527 -LHDEEDWRKLYREADQALFAAKNAGRDR-ACWA 558 >gi|318041857|ref|ZP_07973813.1| diguanylate cyclase [Synechococcus sp. CB0101] Length = 190 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 12/168 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 + ++ Q + D L GLLN +AF + + L DIDYFK++ND +GH Sbjct: 17 EHEKLHQAAHTDGLKGLLNRTAFAPLFDACTADAAAGQGGLVAALMDIDYFKRVNDTYGH 76 Query: 149 PVGDKVIAFLSDQLV--VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 VGD+ + ++ + V P+F R GGEEF + +A LR + + Sbjct: 77 AVGDEALRIVATAIRSSVRDTDPVF--RWGGEEFLLLLPMADLPQALARLEALRDRLRGT 134 Query: 207 QINI-SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I + +I++ +S G+ E + ++ RAD+ALY AK SGR+ Sbjct: 135 PIEVPQPAGAIYVNLSFGVGRHRKGESSAGLLQRADRALYDAKNSGRD 182 >gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300076567|gb|ADJ65966.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 11/168 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHP 149 ++ +L+R D L+ LLN A +L ++ S++F D+D+FK ND +GH Sbjct: 305 QQLEELARTDKLTSLLNRRALDEALARAWKRAEENPDAIFSLLFVDVDFFKLYNDTYGHK 364 Query: 150 VGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD + +S +V GR GGEEF G+ A +A + I++ +I Sbjct: 365 AGDYALMAVSRCIVAAVSRLSDQSGRYGGEEFVVLLNGTDTVGATHVAKRIISAIQSLKI 424 Query: 209 NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254 P +T+S G+ R H I ++ AD ALY AK+ GRN+ Sbjct: 425 PHERSPFDILTVSIGVTSLLREHHSSIEDVVKDADAALYRAKQDGRNK 472 >gi|283470039|emb|CAQ49250.1| ggdef domain protein [Staphylococcus aureus subsp. aureus ST398] Length = 356 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 NR + D L+GL N F L + K ++++ DID FK +ND + H Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 241 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + R GGEEF+ S ++ LA ++R +E S ++ Sbjct: 242 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIRNYSLDQSVKLAENIRSGVEKSSFHL 301 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 + I +++S G+ +P S + AD ++VAK GRN+V+ Sbjct: 302 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 349 >gi|258654169|ref|YP_003203325.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nakamurella multipartita DSM 44233] gi|258557394|gb|ACV80336.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nakamurella multipartita DSM 44233] Length = 702 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 11/170 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 R+ + D L+GL N + F LG E++ + D+D FK IND+ GH VGD Sbjct: 265 RLEHQAHHDALTGLANRALFQQRLGELAATTDPTERIGLCLLDLDGFKAINDSVGHGVGD 324 Query: 153 KVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 +V+ ++ +L V G V RLGG+EF G+S+ + + + ++++ Sbjct: 325 RVLVEIAARLGQTVDGDRQLVARLGGDEFVILVAGTSDAQDMVAVAEAALAAVARPVSVA 384 Query: 212 SGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G ++T SAG+ ER +P + ++ AD LY AK G+ R F Sbjct: 385 GG-VFNVTASAGLVERTAAGADP-AELVRAADITLYWAKAEGKARWAIFD 432 >gi|161525475|ref|YP_001580487.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Burkholderia multivorans ATCC 17616] gi|160342904|gb|ABX15990.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia multivorans ATCC 17616] Length = 935 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 15/177 (8%) Query: 102 QLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 QL R+ D L+GL N I L++VF D+D FK++ND GH VG Sbjct: 382 QLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKEVNDQHGHAVG 441 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DK+++ LS ++ V + RLGG+EF A + E ++ D ++IE + + Sbjct: 442 DKLLSVLSRRMTQVLREGDTLARLGGDEFVAVLVDLPENSFSLPILD--RLIEVAAQPVP 499 Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G ++ ++ S G++ E I ++ +ADQA+Y AK++G+NR F ++ T Sbjct: 500 IGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFDSEKDRT 556 >gi|189349796|ref|YP_001945424.1| signal transduction GGDEF/EAL domain protein [Burkholderia multivorans ATCC 17616] gi|189333818|dbj|BAG42888.1| signal transduction GGDEF/EAL domain protein [Burkholderia multivorans ATCC 17616] Length = 860 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 15/177 (8%) Query: 102 QLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 QL R+ D L+GL N I L++VF D+D FK++ND GH VG Sbjct: 307 QLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKEVNDQHGHAVG 366 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DK+++ LS ++ V + RLGG+EF A + E ++ D ++IE + + Sbjct: 367 DKLLSVLSRRMTQVLREGDTLARLGGDEFVAVLVDLPENSFSLPILD--RLIEVAAQPVP 424 Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G ++ ++ S G++ E I ++ +ADQA+Y AK++G+NR F ++ T Sbjct: 425 IGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFDSEKDRT 481 >gi|330894558|gb|EGH27219.1| response regulator WspR [Pseudomonas syringae pv. mori str. 301020] Length = 334 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + I +I Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHI 284 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 + P +T+S G+A + + + +I AD+ LY+AK +GRN+V Sbjct: 285 APTPGSSLTVSIGVATVTPQVGMHSRQLILDADKGLYLAKNNGRNQVAA 333 >gi|323698265|ref|ZP_08110177.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Desulfovibrio sp. ND132] gi|323458197|gb|EGB14062.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Desulfovibrio desulfuricans ND132] Length = 444 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 13/171 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ +D L+G+ N F L Y +++++F D+D+FK++ND GH GD Sbjct: 272 LKRLATLDSLTGVANRHRFFDRLEHALAVAKRYGTRVAVLFVDLDHFKRVNDTHGHQTGD 331 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINIS 211 +++ ++ +L + RLGG+EF G +QE A+ A DL +++ Q Sbjct: 332 ELLRLVAGRLRQRTRESDTLARLGGDEFGILLPGIVDQEGALSFARDLLEVV--RQPYEV 389 Query: 212 SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + I + GI+ ++ + T+I RAD A+Y AKK GR+ F++ Sbjct: 390 GGLPLTIGATVGISFYPEDGRDTV-TLISRADAAMYGAKKRGRSDFGTFAE 439 >gi|222111210|ref|YP_002553474.1| diguanylate cyclase [Acidovorax ebreus TPSY] gi|221730654|gb|ACM33474.1| diguanylate cyclase [Acidovorax ebreus TPSY] Length = 386 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 7/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-SYNEKLS----IVFFDIDYFKQINDNFGHPVGD 152 +++ ++ D ++ LLN +L S+N++ + ++ D+D+FK+IND +GH GD Sbjct: 209 DQLRHIAARDPMTQLLNRRGLTEALQLSFNQRRAEHAHLLVVDVDHFKRINDTYGHHAGD 268 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 V+ +++ L V RLGGEEFA L + A +A LR IE I+I+ Sbjct: 269 TVLCRVAEILQATARRGDLVSRLGGEEFAVICLHTDFPGAMHMAERLRAAIETQTIDIAE 328 Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRV 255 G + T++ G+++ + + +AD ALY K +GRNRV Sbjct: 329 GGHPLQCTVTVGVSQGFADAHALEAALQQADAALYRGKAAGRNRV 373 >gi|188575107|ref|YP_001912036.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519559|gb|ACD57504.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] Length = 200 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK++ND FGH GD+V+ ++ + F + R GGE F G A Sbjct: 59 DIDHFKRVNDTFGHLYGDEVLLLVAQLMQRAFRQHDLLFRFGGEAFVIVVRGVDRDTAVS 118 Query: 195 LANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 L LR + P + +T+S GI E H IS ++ AD+ALY AK+ GRN Sbjct: 119 LFERLRLAVAQHLF-----PQVGQVTLSTGIVELTHGRLISEMLDEADKALYWAKQHGRN 173 Query: 254 RVVCFSDI 261 R ++++ Sbjct: 174 RAALYAEL 181 >gi|121595554|ref|YP_987450.1| response regulator receiver modulated diguanylate cyclase [Acidovorax sp. JS42] gi|120607634|gb|ABM43374.1| response regulator receiver modulated diguanylate cyclase [Acidovorax sp. JS42] Length = 341 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 11/183 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 + +EL ++ ++++ +D L+GL+N F L S L+++ D+D+FK Sbjct: 148 ELTEELHVANQHLNEMVEMDPLTGLVNRRGFDRILHSEILAARRDGVPLTLMLCDLDHFK 207 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199 + ND GH GD + + L V P V R GGEEFA + A A L Sbjct: 208 RYNDTLGHVQGDACLKEVGRVLHDVCMRPRDVASRYGGEEFALILPNTPRSGAMTFARAL 267 Query: 200 RKIIENSQINISSGPSIH-ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 K++++ I P+ +T+S GI + S T++ RAD+ALY AK GR+R Sbjct: 268 GKLLKSRAIAHPGSPNGETLTLSGGITTCVPDDGTSAETMLMRADEALYAAKAQGRDRFF 327 Query: 257 CFS 259 F Sbjct: 328 SFE 330 >gi|13472768|ref|NP_104335.1| hypothetical protein mlr3171 [Mesorhizobium loti MAFF303099] gi|14023515|dbj|BAB50121.1| mlr3171 [Mesorhizobium loti MAFF303099] Length = 832 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 20/210 (9%) Query: 70 SLVIISITISLLL--GYISGSIL-------KELFISYNRISQLSRIDCLSGLLNHSAF-- 118 S+V +++T + LL G + G++L +E +I R+S + D L+GL + F Sbjct: 336 SVVPVALTGAPLLVSGDVVGAVLAFHDMTREEDYIE--RLSWQASHDALTGLADRRDFES 393 Query: 119 -----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 I L + ++++ D+D FK +ND GH GD+++ +S L + Sbjct: 394 RLERTIVELRGQPRQHALMYLDLDQFKLVNDTCGHAAGDQLLRQISALLTCELRPGDVLA 453 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-P 232 RLGG+EF + EA +A LR ++N + G ++ ++S G+ E + + Sbjct: 454 RLGGDEFGVLLVDCEADEACDIAERLRAAVQNLHF-VWDGRPLNTSVSVGMVEIANAQVT 512 Query: 233 ISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 I + AD A Y+AK+ GRNRV SD + Sbjct: 513 IEETLRAADVACYMAKEKGRNRVQIHSDCD 542 >gi|146294331|ref|YP_001184755.1| diguanylate cyclase [Shewanella putrefaciens CN-32] gi|145566021|gb|ABP76956.1| diguanylate cyclase [Shewanella putrefaciens CN-32] Length = 454 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 8/176 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQIND 144 +L NR + R D L+ LLN A ++ +Y+ + +I+ DID+FK +ND Sbjct: 276 DLLFEQNREVESGR-DVLTRLLNRKFLPAVMTKEVNYSRRNKSQFAILAIDIDHFKTVND 334 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 ++GH GD V+ L+ L ++ RLGGEEF + + +EAA+ A ++R+ +E Sbjct: 335 SYGHEGGDLVLQHLAALLSNTGRGGDYLFRLGGEEFLMLLVDINAREAALSAENIRRKVE 394 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + IT+S G+A + AD AL+ AK++GRN ++ D Sbjct: 395 RETFLLPHNQQLQITVSIGLAMYDGHPDYQRCLRAADDALFAAKRAGRNCIITAID 450 >gi|320332848|ref|YP_004169559.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM 21211] gi|319754137|gb|ADV65894.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM 21211] Length = 810 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 6/160 (3%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R++ ++ D L+GLLN +AF +L + + L ++F D+D+FKQ+ND GHPVGD + Sbjct: 381 RLAYQAQHDALTGLLNRAAFEGALQAAVQGPDTTLGVLFIDLDHFKQVNDTLGHPVGDAL 440 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++++L V V R GG+EF L + + A + A R + S G Sbjct: 441 LIQVAERLSVCVRDGDLVARQGGDEF-TVLLRNVQAHADVEAAAQRILDALSAPMDLVGR 499 Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 ++ +T S GIA H ++T+ AD A+Y AK+ R+ Sbjct: 500 ALVVTASIGIALFPHDGTDVTTLQKHADLAMYHAKRDRRS 539 >gi|294649882|ref|ZP_06727282.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|292824256|gb|EFF83059.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 425 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 10/175 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 K L + + + LS+ D L+ + N F Y + L+++F DIDYFK N Sbjct: 237 KILRLQASELLHLSQHDDLTNVSNRRTFEEMCTYYYDLACQEQKPLAVLFIDIDYFKNYN 296 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GD I+ ++ + F+ R GGEEF + Q A +A ++ + I Sbjct: 297 DFYGHQMGDHAISEIAKTIKGSIRHMDFIARYGGEEFVVLLPETPAQGAYAVATNIYRAI 356 Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 + I + S S H+TIS GI IS +I AD+ALY AK+ GRN++ Sbjct: 357 DRLMIPHAKSLVSNHVTISLGITVFNGNRAISQELLIDTADKALYRAKQLGRNQI 411 >gi|289646232|ref|ZP_06477575.1| response regulator WspR [Pseudomonas syringae pv. aesculi str. 2250] Length = 334 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + I +I Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHI 284 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 + P +T+S G+A + + + +I AD+ LY+AK +GRN+V Sbjct: 285 APTPGSSLTVSIGVATVTPQVGMHSRQLILDADKGLYLAKNNGRNQVAA 333 >gi|153833103|ref|ZP_01985770.1| ggdef family protein [Vibrio harveyi HY01] gi|148870671|gb|EDL69578.1| ggdef family protein [Vibrio harveyi HY01] Length = 655 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 11/162 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 SR+D L+G LN S I + + + + + D+D+FK IND GHP GD V+ Sbjct: 477 SRLDRLTGSLNRSTIIEKIRAQTVSAPEDMRYVLALIDLDHFKLINDQHGHPTGDLVLKH 536 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + + ++GRLGGEEF E + L K I I G S+ Sbjct: 537 VCKAIQAKLNKGEYIGRLGGEEFILLLKNVDEIDVPFRIQSLHKTISEKHIKSEQGDSLS 596 Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256 +T A +A +P+S +Y DQALY +K++G N V+ Sbjct: 597 VT--ASLAYLSTSKPLSNFDELYSILDQALYQSKRNGHNAVI 636 >gi|152998292|ref|YP_001343127.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1] gi|150839216|gb|ABR73192.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas sp. MWYL1] Length = 734 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 6/175 (3%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNF 146 + E+ +++++ L+ D L+ L N A + N K++++F D+D+FK +ND Sbjct: 289 IDEIQKAHDQVEWLAHHDSLTKLPNRVALNKTFHKIIKPNTKIALLFIDLDHFKNVNDTL 348 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH +GD+++ ++D++ + +V R GG+EF L + +E I K ++ Sbjct: 349 GHSIGDQLLLTVADRMRTLVNNIGYVARQGGDEF-IILLPADNEECLIEKTCAIKEALSA 407 Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + NI IT S G++ E T+ RAD A+Y AK +GRNR F++ Sbjct: 408 RYNIDQH-QFFITPSIGVSLYPRNGEDFDTLYQRADAAMYHAKHTGRNRYAFFTE 461 >gi|187922417|ref|YP_001894059.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] gi|187713611|gb|ACD14835.1| diguanylate cyclase [Burkholderia phytofirmans PsJN] Length = 516 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 17/219 (7%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQ-----LSRIDCLSGLLNHSA 117 Y+ + + +I S+ +L + I+ ++L + Y R ++ L+R D L+GL N Sbjct: 282 YVEWRHRAWIIGSLIAALDVTIIALAVLFSYQLRYRRAAEEELRVLARTDGLTGLNNRRT 341 Query: 118 FISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 F + LS++ D+D FK ND +GH GD + ++ + P Sbjct: 342 FEEHAEDEWRRAQRNAWPLSMLLIDVDSFKGFNDLYGHSAGDDALTAVARCISQSVRRPG 401 Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 R GGEEFA + E AA +A +R ++ Q+ + +T+S GIA Sbjct: 402 DTAARYGGEEFAVLLPDTDETGAAFIAEKIRAAVQALQLRHVASSQHVLTVSIGIAT-TR 460 Query: 230 KEPIST---IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 E +T ++ AD ALY AK +GRNRV+ + + + + Sbjct: 461 GEAFATSRALLNAADDALYEAKDAGRNRVLSYRTVTHTS 499 >gi|81300905|ref|YP_401113.1| diguanylate cyclase with GAF sensor [Synechococcus elongatus PCC 7942] gi|81169786|gb|ABB58126.1| diguanylate cyclase with GAF sensor [Synechococcus elongatus PCC 7942] Length = 664 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 83/182 (45%), Gaps = 14/182 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 +L + ++ +L++ D L+GL N F L L ++ DID FKQ ND Sbjct: 479 QLAAANQQLLRLAQSDGLTGLANRRHFDQCLDIEWQRAIREQHPLGLILIDIDCFKQFND 538 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD + ++ L V P V R GGEEF ++EQ +A +R + Sbjct: 539 TYGHQAGDDCLKAVATALTQVIARPADLVARYGGEEFVVILPNTNEQGILQIAESMRSAV 598 Query: 204 ENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +I S + A HK P +I ADQALY AK+ GRNR VC + Sbjct: 599 QQLKIPHRSSSVCSSVSLSLGAVTWVPTPHKSP-EALIAAADQALYQAKELGRNR-VCLA 656 Query: 260 DI 261 + Sbjct: 657 GV 658 >gi|326795669|ref|YP_004313489.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326546433|gb|ADZ91653.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 587 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 11/166 (6%) Query: 99 RISQLSRIDCLSGLLNHS---AFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDK 153 R+S +++ D L+GL N ++IS + +E+ L+ +F D+D FK++ND+ GH GD+ Sbjct: 421 RLSHMAKHDTLTGLPNRDYIMSYISDTLAEDEQRGLTAMFADLDGFKKVNDDLGHQAGDE 480 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILAND-LRKIIENSQINIS 211 ++ +S++L VGR+GG+EF E EA +A+ L+ + + QI Sbjct: 481 LLRQVSERLKHSVREGDVVGRIGGDEFVIILPDVIHETEAENIAHKILQSVKQPYQI--- 537 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G H+ IS G A H + + ++ AD A+Y +K++G++R V Sbjct: 538 EGDQAHVGISIGAASYPNHTDDLDELLKIADAAMYHSKRTGKHRFV 583 >gi|309792204|ref|ZP_07686676.1| diguanylate cyclase [Oscillochloris trichoides DG6] gi|308225745|gb|EFO79501.1| diguanylate cyclase [Oscillochloris trichoides DG6] Length = 647 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 9/176 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140 +++EL + + + D L+GL N A ++ + L + DID FK Sbjct: 473 EVIRELEARTRILEREANEDSLTGLFNRRYIDNHIEALAAAAVQLRQTLCAIMGDIDNFK 532 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND F H +G+ V+ ++ + V R GGEEF + +EA ++A +R Sbjct: 533 QVNDQFSHMLGNDVLRTVAKLMRQNTRESDLVARYGGEEFLILLPNTLLEEAVLIAEAIR 592 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 K +E + + P + +TIS G+A ++ ADQ LYVAK++G+NRV Sbjct: 593 KTVEGYRW-YALEPRLRVTISLGVAV-LRNGDAEQMVATADQQLYVAKRTGKNRVA 646 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 5/97 (5%) Query: 99 RISQLSRIDCLSGL----LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R +QL + L+G+ L + LG + S+++ D+D FK ND +G GD+ Sbjct: 148 RAAQLPVRNPLTGMPGNVLLQAELERQLG-LDHAFSLLWIDLDNFKAFNDAYGFARGDRA 206 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 I L+ + FVG +GG++FA G+ ++ Sbjct: 207 IHLLAHVITETSDHDDFVGHIGGDDFAIIHFGNDPED 243 >gi|209809247|ref|YP_002264785.1| putative GGDEF protein [Aliivibrio salmonicida LFI1238] gi|208010809|emb|CAQ81206.1| putative GGDEF protein [Aliivibrio salmonicida LFI1238] Length = 528 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 10/169 (5%) Query: 98 NRISQLSRI---DCLSGLLNH----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N++ +L + D L+ L N SAFI + + ++ DID FK IND + H Sbjct: 362 NKVKKLQKDVQHDSLTKLYNRRWFESAFIKKILPTIKHYQLLIIDIDDFKSINDEYSHLT 421 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQIN 209 GD V+ L L + R GGEEF + + +A R++I N S + Sbjct: 422 GDVVLKRLGRILQKNLDNSHYALRYGGEEFLLIIPSNDLEVGRRIAEQCRELIANVSWKH 481 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I + S IT+S G+A + EP + RAD+ALY AK+SG+N+V + Sbjct: 482 ILNDRS--ITVSIGLAINTNSEPCKSTFLRADKALYKAKRSGKNKVCIY 528 >gi|145299161|ref|YP_001142002.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851933|gb|ABO90254.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 412 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 9/200 (4%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125 LSL+ LLL + + L + + Q + D L+GLL+ F L + Sbjct: 206 LSLLFTIARSYLLLSLVHTRQQQALLATQRELEQRANQDELTGLLSRHYFQQLLQAQVSA 265 Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 ++ D+D FKQIND GHP GD ++ + + GRLGG+E Sbjct: 266 GANPCQLLLIDLDDFKQINDRHGHPAGDAMLRLVGQVIRTTLPRQGIAGRLGGDEL-VIF 324 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 L + Q + L++ I + ++ GP I++S G+ E RAD+AL Sbjct: 325 LMENPQTLPHYCHTLQQRIAQATSQLAGGP---ISMSIGLTSLQPGERFEQAYPRADRAL 381 Query: 245 YVAKKSGRNRVVCFSDIENN 264 Y AK+ GR R C + ++ Sbjct: 382 YAAKQGGRQR-TCIQEPHHS 400 >gi|71734371|ref|YP_276013.1| response regulator WspR [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487127|ref|ZP_05641168.1| response regulator WspR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298488300|ref|ZP_07006332.1| Two-component response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554924|gb|AAZ34135.1| response regulator WspR [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157122|gb|EFH98210.1| Two-component response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323153|gb|EFW79242.1| response regulator WspR [Pseudomonas syringae pv. glycinea str. B076] gi|320329575|gb|EFW85564.1| response regulator WspR [Pseudomonas syringae pv. glycinea str. race 4] gi|330878329|gb|EGH12478.1| response regulator WspR [Pseudomonas syringae pv. glycinea str. race 4] gi|330985075|gb|EGH83178.1| response regulator WspR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009248|gb|EGH89304.1| response regulator WspR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 334 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + I +I Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHI 284 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 + P +T+S G+A + + + +I AD+ LY+AK +GRN+V Sbjct: 285 APTPGSSLTVSIGVATVTPQVGMHSRQLILDADKGLYLAKNNGRNQVAA 333 >gi|311103803|ref|YP_003976656.1| c-di-GMP phosphodiesterase A [Achromobacter xylosoxidans A8] gi|310758492|gb|ADP13941.1| c-di-GMP phosphodiesterase A [Achromobacter xylosoxidans A8] Length = 858 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 10/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI QL+ D L+GL N + I+ ++++++F D+D FKQ+ND GHP+G Sbjct: 428 RIRQLAFYDELTGLPNRNLLLAQAEQAIARAEPERKRVAVLFLDLDRFKQVNDTLGHPIG 487 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ ++ +L + VGRL G+EF L + + A ++ +Q Sbjct: 488 DALLRDVAQRLRRLARAADIVGRLSGDEF--VMLMPDFEHGRLTAAAEHVLVALAQPFSV 545 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 G +++ ++S GI+ + T++ AD A+Y AK +GRNR+ FS Sbjct: 546 GGITLNPSVSIGISVFPENGRDMDTLLRHADMAMYQAKTAGRNRISFFS 594 >gi|206564659|ref|YP_002235422.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] gi|198040699|emb|CAR56685.1| putative diguanylate cyclase [Burkholderia cenocepacia J2315] Length = 521 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 19/207 (9%) Query: 68 NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 + ++ I S + L +G++ S+L ++ + + L+R D L+GL N +L Sbjct: 303 DRAIPIGSAMVVLAIGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174 + LS++F D+DYFK+ ND GH GD +A + + P + R Sbjct: 363 AREWRRAARSQHALSLLFIDVDYFKRYNDTQGHQAGDDALAAVGHCIAGCLRRPADYAAR 422 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI----AERCHK 230 GGEEF A +A +R + + I +G +T+S G+ ER Sbjct: 423 YGGEEFVVVLPDIDSDGAVTIAETIRTGVLDLGIRHDAGTVGRLTVSIGVTTSYPER--D 480 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVC 257 + I + AD ALY AK+ GRNR+V Sbjct: 481 DNIQAALKLADDALYRAKEGGRNRIVV 507 >gi|115376279|ref|ZP_01463519.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1] gi|115366704|gb|EAU65699.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1] Length = 614 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 21/187 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 KEL + LSR D L+ L N F L Y LS+V DID+FK+IN Sbjct: 432 KELARKREELLTLSRTDPLTSLSNRRYFEERLAEEFARARRYRSPLSLVMLDIDHFKRIN 491 Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 D +GHP GD+V +A +S + + R GGEE A +S +A +R Sbjct: 492 DTYGHPFGDEVLRAVALVSRTRLREV---DLLARYGGEELIALLPETSPADALRACERVR 548 Query: 201 KIIENSQIN--ISSGPSIHITISA--GIAERCHKEPIST---IIYRADQALYVAKKSGRN 253 + IE+ +++ S G S ++ +A G+A P+ T ++ AD+ LY AK++GRN Sbjct: 549 EAIESLRLDYRASDGTSQKVSCTASLGLAS-LPSVPLQTAEDLLRAADECLYKAKEAGRN 607 Query: 254 RVVCFSD 260 RV + + Sbjct: 608 RVRQYEE 614 >gi|77361182|ref|YP_340757.1| two-component response regulator [Pseudoalteromonas haloplanktis TAC125] gi|76876093|emb|CAI87315.1| putative two-component response regulator protein with GGDEF domain [Pseudoalteromonas haloplanktis TAC125] Length = 421 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 82/160 (51%), Gaps = 7/160 (4%) Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GL N F L + N+K S+V DID+FK IND FGH GD+ + +S+ + Sbjct: 257 DHLTGLYNRRYFYQYAEKLLKNKNQKNSLVLLDIDFFKAINDEFGHDGGDQALKQVSNLI 316 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 F V R+GGEEFA ++A N + + IS ++ IT S Sbjct: 317 RTSFSNST-VARIGGEEFAIILTQVEVEQAEKCLNLFIQKFASYDFTISD-KTLSITASI 374 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 G+AE ++ + AD+ALY AK+ GRN VV S ++ Sbjct: 375 GLAE-FQNTSLTAAMRVADRALYQAKEQGRNCVVLNSTLQ 413 >gi|89074256|ref|ZP_01160746.1| sensory box/GGDEF family protein [Photobacterium sp. SKA34] gi|89049960|gb|EAR55494.1| sensory box/GGDEF family protein [Photobacterium sp. SKA34] Length = 360 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 13/130 (10%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAAL 185 S++F DID FKQ+ND +GH +GD+V+ + + R GGEEF A L Sbjct: 231 SMMFIDIDNFKQVNDKYGHRLGDEVLRRFASLINKRVRKSDVFARWGGEEFVIFCPATPL 290 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 G++ A LA +R+ IEN+ + + +T S G+AE E I RAD+AL Sbjct: 291 GAT----AKLAESIRECIENAVWD----NGMKVTCSLGVAE-LENEDYCHFIERADEALM 341 Query: 246 VAKKSGRNRV 255 AK+ GRNRV Sbjct: 342 KAKERGRNRV 351 >gi|126174337|ref|YP_001050486.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS155] gi|125997542|gb|ABN61617.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS155] Length = 546 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 12/159 (7%) Query: 107 DCLSGLLNHSA-FISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNH+ +++ YN ++ I FD+D+FK++ND +GH GDKV+ + Sbjct: 384 DSLTGLLNHTQILVTARRCYNVARRINSQVCIAMFDLDHFKKVNDTYGHAGGDKVLLAFA 443 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L F GR GGEEF + A N +R+ + + + G +T Sbjct: 444 HLLQQSLRQTDFTGRYGGEEFMLVLPDMQKPLAIAKLNAIRESFSHI-VFVEDGVEFKVT 502 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+ ++ C E + AD+ LY AK+ GRN++V Sbjct: 503 LSGGLVFSDEC--EEFQDCLLLADKHLYEAKRLGRNQLV 539 >gi|257865253|ref|ZP_05644906.1| diguanylate cyclase [Enterococcus casseliflavus EC30] gi|257871581|ref|ZP_05651234.1| diguanylate cyclase [Enterococcus casseliflavus EC10] gi|257799187|gb|EEV28239.1| diguanylate cyclase [Enterococcus casseliflavus EC30] gi|257805745|gb|EEV34567.1| diguanylate cyclase [Enterococcus casseliflavus EC10] Length = 159 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 4/138 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT----PMFVGRLGGEEFA 181 EKL + D+D+FK+IND++GH G++ + F S ++ + V R GGEEF Sbjct: 22 KEKLIFIMMDLDHFKRINDHYGHITGNRALIFFSKKITTFLSEAHQDQVEVYRYGGEEFL 81 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 S+ + + + +++NI I + SAGI++ + +I +AD Sbjct: 82 VIFKDSTLKSVQKTILRFQAFLLKNKLNIGGERKITLYFSAGISKYDSSLDVYELINQAD 141 Query: 242 QALYVAKKSGRNRVVCFS 259 QALY AKK GRN VV +S Sbjct: 142 QALYAAKKRGRNTVVVYS 159 >gi|332527064|ref|ZP_08403146.1| hypothetical protein RBXJA2T_14166 [Rubrivivax benzoatilyticus JA2] gi|332111496|gb|EGJ11479.1| hypothetical protein RBXJA2T_14166 [Rubrivivax benzoatilyticus JA2] Length = 265 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 9/156 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + L E+ ++ D+D+FK +ND GH GD V+ ++ Sbjct: 109 DPLTGLGNRRFLMERLREEGERTQRLGRGFAVAIMDVDHFKAVNDAHGHETGDSVLQVIA 168 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + GR GGEEF + + A + +R+ I + I+ + +T Sbjct: 169 QAVESGVRRYDHCGRWGGEEFLMLLPETPLEAARAIVERIRQAI--ADIDHVGEVRVSLT 226 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+AE E S I RADQALY AK +GRNRV Sbjct: 227 ASFGLAEHRDGEDFSATINRADQALYAAKAAGRNRV 262 >gi|329929417|ref|ZP_08283165.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] gi|328936504|gb|EGG32949.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] Length = 387 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 127/279 (45%), Gaps = 51/279 (18%) Query: 19 LESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77 L SF P+T I+ SI+F V+ +A ++L Y +TP G L++ +I Sbjct: 122 LPSFLPYTLDPIWQSIYFD-----VLQLAALYLAYTQVTPRIGQPIKYALGLAVYVIWTI 176 Query: 78 ISLLLGYISGSILKEL----------------FISYNRISQLSR-------IDCLSGLLN 114 + + Y SGS+ L FI + RI +L + D L+GL N Sbjct: 177 LQAVHTY-SGSLSPALQGLALALPVLFYSIVFFILFRRIVELMQSIYRSAITDGLTGLYN 235 Query: 115 HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFG 167 F+ L Y K+S +F DID FK++ND GH D+V+ A + ++L + Sbjct: 236 RRHFMKHLDHYAAQELKISAIFCDIDNFKKLNDTQGHARADEVLKQVAAIMEEELEGIGI 295 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 T GR GGEE A + + A + ++ S + IS G S+ + G+ Sbjct: 296 T----GRYGGEELVALVVDRKAKPAQVAEKIRARVASESIVTISIGYSV---LRKGVRG- 347 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 ++ +AD+A+Y +K +G+N+V + ++ ++ Sbjct: 348 ------DELMKQADKAMYHSKTTGKNKVSDYRSLKTSST 380 >gi|288555085|ref|YP_003427020.1| response regulator receiver modulated diguanylate cyclase [Bacillus pseudofirmus OF4] gi|288546245|gb|ADC50128.1| response regulator receiver modulated diguanylate cyclase [Bacillus pseudofirmus OF4] Length = 446 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 35/234 (14%) Query: 57 PFYGLEYILV-ENLSLVIISITISLL---LGYISGSILKELFISYNRISQL--------- 103 P +G+E+++ E +IS+ + L I+G + I+ +I++ Sbjct: 216 PVFGIEHMIEGEGGEKTLISVNAAPLYDEFDQITGVLCSITDITAQKITEQQLLEANLLF 275 Query: 104 ---SRIDCLSGLLNHSAFISSL-GSYNEK------LSIVFFDIDYFKQINDNFGHPVGD- 152 S ID L+G+ N +F +L ++E L+++ D+D FK ND +GH GD Sbjct: 276 KRKSEIDGLTGIPNRRSFDKTLQAEWDESERAGSLLTLIMLDLDSFKHFNDTYGHQKGDD 335 Query: 153 --KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 + +A D+ VV F+ R GGEEF G+S +E+ LA ++++++ QI Sbjct: 336 CLRKVAVAIDR--VVQDHKGFLARYGGEEFTVIKRGASLEESRYLAEEIKEVVYQLQIPH 393 Query: 210 ----ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I + ++ + ++ E C + + ADQA+Y AKK GRN+V+ ++ Sbjct: 394 QTSVIDNVVTVSVGVAVKQNEHCRDSKM--LFDWADQAMYQAKKKGRNQVLVYN 445 >gi|254712420|ref|ZP_05174231.1| response regulator PleD [Brucella ceti M644/93/1] gi|254715492|ref|ZP_05177303.1| response regulator PleD [Brucella ceti M13/05/1] gi|261217227|ref|ZP_05931508.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti M13/05/1] gi|261320098|ref|ZP_05959295.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti M644/93/1] gi|260922316|gb|EEX88884.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti M13/05/1] gi|261292788|gb|EEX96284.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti M644/93/1] Length = 462 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S R S D L+GL N ++ + LSI+ D+D+FKQ+N+ +GH Sbjct: 289 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 348 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ S +L + R GGEEF + Q A +A +R I+ + Sbjct: 349 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 408 Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G +T+S G+A R + + + RA AL AK+SGRNR+V Sbjct: 409 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 458 >gi|91224635|ref|ZP_01259896.1| sensory box/GGDEF domain/EAL domain protein [Vibrio alginolyticus 12G01] gi|91190523|gb|EAS76791.1| sensory box/GGDEF domain/EAL domain protein [Vibrio alginolyticus 12G01] Length = 322 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 16/171 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++++L+ D L+GLLN A + +++ ++VF DID FK +ND GH GD Sbjct: 155 QLAKLASSDPLTGLLNRKAIEENFNHQPQTEPSQQSALVFVDIDNFKAVNDQLGHHTGDT 214 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISS 212 ++ +++ L + + VGR+GG+EF SS +E + L N L II ++ Sbjct: 215 LLINIANSLTELASSKSQVGRIGGDEFVILNWHSSREEISQLCNQLLDSIIPAMNQDLH- 273 Query: 213 GPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + I +S G+ C K+P + + +AD A+Y KK+G+N V F+ Sbjct: 274 --KVTIGMSIGV---CLFNKGKQPFNEVYQKADHAMYEIKKNGKNGVQFFN 319 >gi|39936678|ref|NP_948954.1| diguanylate cyclase [Rhodopseudomonas palustris CGA009] gi|39650534|emb|CAE29057.1| putative diguanylate cyclase (GGDEF) with PAS/PAC domain [Rhodopseudomonas palustris CGA009] Length = 644 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 16/173 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 KE+ R+++L+R D L+GL N F++ + + + LS++ D+D FK ND+FG Sbjct: 449 KEVEALNARLAELARTDGLTGLPNRRSLDGFVARVITSSPTLSVLMIDVDDFKGFNDHFG 508 Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 H GD + QL +FG + F R GGEEF G+ A A L+ Sbjct: 509 HQGGDDALR----QLGHLFGGLVASVHGFAARYGGEEFTIVLPGADAVAAVDFAESLQAA 564 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPI-STIIYR-ADQALYVAKKSGRN 253 + I + ++T+S GIA C P ST++ R AD ALY AK+ GR+ Sbjct: 565 VRTLAIRNPASARGYLTVSIGIA--CGTAPCDSTVLLRDADIALYEAKRRGRD 615 >gi|326388043|ref|ZP_08209647.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370] gi|326207544|gb|EGD58357.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370] Length = 392 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 91/188 (48%), Gaps = 19/188 (10%) Query: 88 SILKELFISYNRISQLSRI----------DCLSGLLNHSAF-------ISSLGSYNEKLS 130 S+ EL S RI +L + D L+GL N AF + E L Sbjct: 191 SVEGELAASEARIDRLQQRLEEARRLANHDHLTGLPNRRAFDGMFEREMREARLAGEGLC 250 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + F DID+FK+IND GHP GD+VI +++D L + V R GGEEFA G S Sbjct: 251 VAFCDIDHFKRINDVHGHPAGDRVIRYVADVLGRISLAKCHVARHGGEEFAVLLRGVSVD 310 Query: 191 EAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 EA + R + + ++ ++ P +T S GIA+ + S + AD ALY AK Sbjct: 311 EAWAKLDAARAELADKRLVNRVNDMPLGRVTFSGGIADVFACKSRSAALKAADDALYAAK 370 Query: 249 KSGRNRVV 256 +GRN +V Sbjct: 371 NAGRNCIV 378 >gi|325290110|ref|YP_004266291.1| diguanylate cyclase/phosphodiesterase [Syntrophobotulus glycolicus DSM 8271] gi|324965511|gb|ADY56290.1| diguanylate cyclase/phosphodiesterase [Syntrophobotulus glycolicus DSM 8271] Length = 615 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 10/191 (5%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNE 127 +T S L+ I+G + E+ N++++ D L+ N L + NE Sbjct: 425 DMTRSDLIFSINGKSITEINRIVNKMNEEMLKDSLTNTYNRRYIEERLLVDIFNASNQNE 484 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALG 186 +S++ DIDYFK+IND +GH GD V+ + + + ++ R GGEEF Sbjct: 485 PISVILADIDYFKKINDTYGHLAGDHVLREFAKIIKQHIRKNTDWIARYGGEEFLIVLSD 544 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245 S+E A +A +R+ +E ++I ++ +I IT S G K +I AD+ LY Sbjct: 545 SNENIAYRVAEKVRQAVEKARIRYNN-KNICITASFGTYTLNSEKMTYEQLIDNADKNLY 603 Query: 246 VAKKSGRNRVV 256 AK SGRN+ V Sbjct: 604 RAKNSGRNKTV 614 >gi|309778339|ref|ZP_07673265.1| FHA/GGDEF domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308913905|gb|EFP59719.1| FHA/GGDEF domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 442 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 3/181 (1%) Query: 77 TISLLLGYISGSILKELF-ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFD 135 I ++LG ++ KEL S +R + + SG + E +I+FFD Sbjct: 259 NIKVVLGTMNDITEKELLKTSASRDPLIGCFNRRSGDMTLVTTFQKFQKEEEFYTIIFFD 318 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 +D FK++ND +GH +GD V+ + +Q+ + + R GG+EF G S++ Sbjct: 319 VDDFKKVNDRYGHDMGDYVLRHVCEQIEKEIRSSDMLFRWGGDEFLLICSGISKENIYAY 378 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254 LR++IE + I G H+T+S G A + + RAD+++Y AK +GRN+ Sbjct: 379 IERLRRLIEKTDF-IFDGNKAHVTLSIGAAYYYKSDHDYQDALKRADRSVYKAKLAGRNK 437 Query: 255 V 255 V Sbjct: 438 V 438 >gi|322434504|ref|YP_004216716.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9] gi|321162231|gb|ADW67936.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9] Length = 790 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 28/219 (12%) Query: 66 VENLSLVIISITISL-------LLGYIS----------GSILKEL--FISYNRISQLSRI 106 V L L I+S+ + +LGY+S ++++EL F + +++ Sbjct: 303 VSALGLAIVSVGAAAAVMGRHPVLGYMSLVGGFGLFALRTVVRELQSFKANDQLRDAVLR 362 Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + F +GS+ KL +++F D+D FK +ND GH VGD+++ + Sbjct: 363 DHLTGLGNRALFREHVGSFVTKLVRPEMKVALMFVDLDRFKAVNDELGHGVGDRLLIETA 422 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L V RLGG+EF A + + E A A DL I G + +T Sbjct: 423 GRLERASRKEDLVCRLGGDEFVVAMVIAGEAMARNRAEDLLDAIREP--FAVDGRVLKMT 480 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S G+ + + +++ +AD A+Y AKK G+++ F Sbjct: 481 ASIGVVLGDATDDVESLLRKADGAMYSAKKLGKDQAQVF 519 >gi|296157943|ref|ZP_06840776.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Burkholderia sp. Ch1-1] gi|295891711|gb|EFG71496.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Burkholderia sp. Ch1-1] Length = 689 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 13/166 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +I +L+ +D L+GL N S I +++F D+D FK IND+ GH V Sbjct: 253 GQIVRLATLDSLTGLPNRSTLTERIEHAIHRAQRQRSMCAVLFMDLDGFKTINDSLGHSV 312 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQI 208 GD+V+ + +L++ V RLGG+EF A LGS E A+ L ++ + Sbjct: 313 GDQVLTAFAQRLLLCVRASDTVARLGGDEFVVLAEDLGSREDAGALAEGVLDRM--RMGM 370 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 S P + + S GIA H + + +++ AD A+Y AK++GR+ Sbjct: 371 WTDSQP-LQVMPSIGIALFPHDGDTVDSLLKNADAAMYEAKRAGRS 415 >gi|262276540|ref|ZP_06054349.1| hypothetical GGDEF domain family protein [Grimontia hollisae CIP 101886] gi|262220348|gb|EEY71664.1| hypothetical GGDEF domain family protein [Grimontia hollisae CIP 101886] Length = 518 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 106 IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ + N +A L Y L + DID+FK +ND +GH VGDKV+ + Sbjct: 360 LDPLTKVYNRAALDDRLEHEYRCWMRYQTPLCLAMIDIDHFKGVNDQYGHLVGDKVLKVV 419 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + + F+ R GGEEF + + +L N++R+ I + I Sbjct: 420 ARTIHQCLRDTDFIARFGGEEFVVLLPNTDGETRNVLLNNVRETIAKLPFKFKDN-RLTI 478 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G + + ++ RAD ALY AK +GRN+++ Sbjct: 479 TVSIGASMFKDNDNTVDVLERADNALYNAKDNGRNKLI 516 >gi|288549691|ref|ZP_06390767.1| protein gmr [Enterobacter cancerogenus ATCC 35316] gi|288317934|gb|EFC56872.1| protein gmr [Enterobacter cancerogenus ATCC 35316] Length = 663 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 18/185 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 SG+ + E + R+ L+ D ++GL N +A I++ G + ++ IV+ D+D Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAIHELISDAINARG--DTQVGIVYLDLDN 276 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAI 194 FK++ND +GH GD+++ ++ ++ + RLGG+EF + + GS E A+ Sbjct: 277 FKKVNDAYGHMFGDQLLQAVALAILSCLDEGQTLARLGGDEFIVMASDTSQGSLEAMASR 336 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + LR+ I + +G S+ I ++ H ++I AD A+Y AK+SGR + Sbjct: 337 ILTRLRQPFRIGLIEVYTGCSLGIALAPQ-----HGTDRESVIRNADTAMYTAKESGRGK 391 Query: 255 VVCFS 259 FS Sbjct: 392 FCVFS 396 >gi|223984843|ref|ZP_03634951.1| hypothetical protein HOLDEFILI_02250 [Holdemania filiformis DSM 12042] gi|223963182|gb|EEF67586.1| hypothetical protein HOLDEFILI_02250 [Holdemania filiformis DSM 12042] Length = 543 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 13/164 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 S D L+GL N F L +++S+++ D+DYFK +ND GH GD+ + + Sbjct: 369 SNTDFLTGLYNRRHFYEYLAQNRGQQRVSLIYADLDYFKLLNDTQGHQAGDEALVLTAVL 428 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSS--EQEAAILANDLRKIIENSQINISSGPSIHIT 219 L F F+ RLGG+EF LG+ + A LRK+ E + SIH + Sbjct: 429 LKQCFPD-AFLTRLGGDEFLILYLGNWALTELTARSQTFLRKMEEQFRSR-----SIHPS 482 Query: 220 ISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++A I +P + ++ R+DQALY AK+ GRN+V + + Sbjct: 483 LTASIGIAQTDDPQLSVDKLMQRSDQALYQAKQQGRNQVRVYGE 526 >gi|222111775|ref|YP_002554039.1| response regulator receiver modulated diguanylate cyclase [Acidovorax ebreus TPSY] gi|221731219|gb|ACM34039.1| response regulator receiver modulated diguanylate cyclase [Acidovorax ebreus TPSY] Length = 341 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 11/183 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 + +EL ++ ++++ +D L+GL+N F L S L+++ D+D+FK Sbjct: 148 ELTEELHVANQHLNEMVEMDPLTGLVNRRGFDRILHSEILAARRDGVPLTLMLCDLDHFK 207 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDL 199 + ND GH GD + + L V P V R GGEEFA + A A L Sbjct: 208 RYNDTLGHVQGDACLKEVGRVLHDVCMRPRDVASRYGGEEFALILPNTPRSGAMTFARAL 267 Query: 200 RKIIENSQINISSGPSIH-ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 K++++ I P+ +T+S GI + S T++ RAD+ALY AK GR+R Sbjct: 268 GKLLKSRAIAHPGSPNGETLTLSGGITTCVPDDGTSAETMLMRADEALYAAKAQGRDRFF 327 Query: 257 CFS 259 F Sbjct: 328 SFE 330 >gi|78358456|ref|YP_389905.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220861|gb|ABB40210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 935 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 15/177 (8%) Query: 102 QLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 QL R+ D L+GL N I L++VF D+D FK++ND GH VG Sbjct: 382 QLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKEVNDQHGHAVG 441 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DK+++ LS ++ V + RLGG+EF A L + ++ D ++IE + + Sbjct: 442 DKLLSVLSRRMTQVLREDDTLARLGGDEFVAVLLDLPDISVSVPILD--RLIEVAAQPVP 499 Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G ++ ++ S G++ E I ++ +ADQA+Y AK++G+NR F ++ T Sbjct: 500 IGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFDTEKDRT 556 >gi|39997726|ref|NP_953677.1| GGDEF domain-containing protein [Geobacter sulfurreducens PCA] gi|39984618|gb|AAR36004.1| GGDEF domain protein [Geobacter sulfurreducens PCA] gi|298506660|gb|ADI85383.1| diguanylate cyclase [Geobacter sulfurreducens KN400] Length = 411 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 24/171 (14%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL + A L + S+ D+D+FK+ ND +GH VGD+V+ ++ +L V Sbjct: 241 DELTGLPSRRALSEQLTWLGRRYSVAMVDVDHFKKFNDTYGHDVGDQVLRLVAAKLRGVG 300 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG--PS--------- 215 G R GGEEF S +E +LR+ I + Q+ + S P+ Sbjct: 301 GGGKAY-RYGGEEFTILFPHRSREEVLGRLEELRRAIADYQMRLRSSDRPASSREGKRQR 359 Query: 216 ---------IHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRV 255 + +TIS G+AE + P + +I AD ALY AK GRN+V Sbjct: 360 SGMPQGRGCVSVTISIGVAESSSELRRP-ADVIKAADDALYRAKGRGRNQV 409 >gi|50122546|ref|YP_051713.1| hypothetical protein ECA3625 [Pectobacterium atrosepticum SCRI1043] gi|49613072|emb|CAG76523.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 610 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+GL N S+F + + +K + DID FK IND FGH GD V+ Sbjct: 452 DFLTGLPNRSSFFEQASAFFLLRQQNQHADKSCLAIIDIDLFKNINDQFGHLAGDAVLKE 511 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 L+ + + V R+GGEEF Q A + +RK IE + +++ Sbjct: 512 LAMLMRMSLRQEDLVARIGGEEFIILLKDVPYQTAVMAIERIRKAIEQHTLEYDR-QNLN 570 Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 TISAGIA R + I AD+ LY AK+ GRN Sbjct: 571 FTISAGIAAYRSDLASVEDWIQLADENLYAAKRQGRN 607 >gi|114049396|ref|YP_739946.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. MR-7] gi|113890838|gb|ABI44889.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. MR-7] Length = 1209 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 22/172 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 NR+S SR++ + AF+S +++++F D+D+FK IND GH VGD ++ Sbjct: 794 NRLSLQSRLETVF----QEAFVS-----QTQIAVMFIDMDHFKNINDTLGHHVGDMLLLE 844 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK------IIENSQINIS 211 ++ +L + + V RLGG+EF + E A +A LR II+N ++ Sbjct: 845 VARRLKNIVSSDDIVARLGGDEFVVVLSDTDHDEVAKVAEALRSGLNQTYIIDNKPLH-- 902 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S PSI I++ + + ++ AD A+Y AK +GRN F+ N Sbjct: 903 SSPSIGISLFP-----TDGDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMN 949 >gi|94499383|ref|ZP_01305920.1| GGDEF domain protein [Oceanobacter sp. RED65] gi|94428137|gb|EAT13110.1| GGDEF domain protein [Oceanobacter sp. RED65] Length = 311 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 7/156 (4%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N A SL + L+I+ DID+FK IND FGH VGD+++ Sbjct: 144 DPLTGAGNRIALNESLQREMELAKRHGHDLAILMLDIDHFKTINDRFGHLVGDEMLKATV 203 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + R GGEEF + A ++A +R + + + + T Sbjct: 204 NTITQCVRQTDICFRYGGEEFVVILNNCNIANARLIAERIRMDVSETVLQTQDDNFLQAT 263 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS G++ + + +I+RAD ALY AK SGRN+V Sbjct: 264 ISCGLSVYDANDTLENLIHRADIALYKAKNSGRNKV 299 >gi|307151520|ref|YP_003886904.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306981748|gb|ADN13629.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 324 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 84/182 (46%), Gaps = 13/182 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + ++ +L ID L+ + N F L + L+++F DIDYFK N Sbjct: 136 QQLEAANEKLQRLVSIDGLTQIHNRRRFDECIQFEWQRLAREEQWLALIFIDIDYFKLYN 195 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD + ++ + P F R GGEEFA + A +A +R Sbjct: 196 DTYGHQAGDHCLQQVAQTIQNTLQRPADFAARYGGEEFAVILPNTHLAGAKKVAEKIRFN 255 Query: 203 IENSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 IEN I S+ +SA + C +E +I +ADQALY AK GRN +V Sbjct: 256 IENLHIPHQKS-SVSQWVSASLGVVCLIPDAQETPKQLIKKADQALYQAKLQGRNCLVTV 314 Query: 259 SD 260 + Sbjct: 315 DE 316 >gi|158338941|ref|YP_001520118.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158309182|gb|ABW30799.1| diguanylate cyclase (GGDEF) domain protein [Acaryochloris marina MBIC11017] Length = 449 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 11/183 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 +L S + +L+ +D L+ + N F I +S++ DID+FK++ND Sbjct: 254 QLEQSQQDLYRLATLDGLTEVYNRREFNRWLLVEIERSQRGEHPVSLIMVDIDHFKRLND 313 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD + ++ L V R GGEEF ++ ++ ++A +R I Sbjct: 314 TYGHQAGDLALCEVAQLLQREVRPGDIVCRYGGEEFGVILPKATSADSWVIAERIRLAIA 373 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + + S I +T S G+A H + ++ +ADQALY AK GRNRV E Sbjct: 374 EKSVVLPSQQHIDMTASLGVATYPDHADCKERLVKQADQALYTAKYQGRNRV---HSAEV 430 Query: 264 NTC 266 N C Sbjct: 431 NEC 433 >gi|91791613|ref|YP_561264.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91713615|gb|ABE53541.1| GGDEF domain [Shewanella denitrificans OS217] Length = 417 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 31/194 (15%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIN 143 +++ I+ F++Y D L+GL + A + S K S+ DID+FK+ N Sbjct: 231 FLATVIIDSYFLAYR--------DELTGLPSRRALFNLSLSLGRKYSVAMVDIDHFKKFN 282 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA---------------ALGSS 188 D +GH VGD+V+ ++ +L V G R GGEEF S Sbjct: 283 DTYGHDVGDQVLKLVAAKLAQVTGGGK-AFRYGGEEFTIVFPRKEVKRVFPHLDDVRESV 341 Query: 189 EQEAAILANDLRKIIENSQIN---ISSGP----SIHITISAGIAERCHKEPISTIIYRAD 241 E+ +L + RK E+ Q + P ++ +T+S G A+ + + AD Sbjct: 342 EEYEIVLREEKRKGKEDKQASKKRTKKAPAKQRTVSVTVSIGCAQHQADQSFEQCMKEAD 401 Query: 242 QALYVAKKSGRNRV 255 +ALY AK+ GRN+V Sbjct: 402 KALYKAKERGRNQV 415 >gi|57239049|ref|YP_180185.1| response regulator PleD [Ehrlichia ruminantium str. Welgevonden] gi|58578992|ref|YP_197204.1| response regulator PleD [Ehrlichia ruminantium str. Welgevonden] gi|57161128|emb|CAH58041.1| putative response regulator component of a two-component regulatory system [Ehrlichia ruminantium str. Welgevonden] gi|58417618|emb|CAI26822.1| Putative regulatory component of sensory transduction system [Ehrlichia ruminantium str. Welgevonden] Length = 461 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 12/160 (7%) Query: 107 DCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+G N H+ SL ++ +S++ DID+FK++ND FGH +GD+++ Sbjct: 297 DPLTGCFNRRYFDMHFHNMITESLCK-DKTISLMILDIDHFKEVNDTFGHTIGDELLRQF 355 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +++ + R GGEEF + A + ++ + S G IH Sbjct: 356 KNRVSDNIRITDLLARFGGEEFVIVLPDTDINTAYQTGLRILSLVGETPFKTSIG-DIHK 414 Query: 219 TISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256 T+S GI E H + I +I RAD+ LY AK +GRN++V Sbjct: 415 TVSIGITEMLHSDINNIKQLIDRADKCLYEAKNTGRNKIV 454 >gi|289666116|ref|ZP_06487697.1| Putative signal protein with GGDEF domain [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 973 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 14/159 (8%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN S + ++ L++V D+D+FKQ+ND GH VGD V+A + Sbjct: 809 DALTGLLNRSGILEAMAEELQGCAHGQHPLAVVLIDLDHFKQVNDGHGHLVGDAVLAKVG 868 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216 +L VGR GGEE G ++Q + LR I E + + + + Sbjct: 869 ARLTACLRDSDKVGRYGGEELLLLLPGMTQQS----QHRLRAIHEALSLAPYEVGTARPL 924 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G++ + ++++ RAD+ALY AK+SGRNR+ Sbjct: 925 QVTCSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 963 >gi|260222160|emb|CBA31448.1| hypothetical protein Csp_F37580 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 366 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 94/177 (53%), Gaps = 23/177 (12%) Query: 96 SYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGH 148 + NR +S LS D L+ L N A ++ + + +++ D+D+FK++ND++GH Sbjct: 188 TENRELSALSLTDPLTRLGNRRALERAVEQWQMQSELGTPAALLMVDVDHFKRVNDSYGH 247 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ L+ QL V R GGEEFA G+ A+ +A + ++++ + Sbjct: 248 EEGDRVLQELARQLQASKRGSDVVVRYGGEEFALWLPGAGPDGASAIAQRVHLLVQD--V 305 Query: 209 NISSGPSIHITISAGIAERCHKEP---------ISTIIYRADQALYVAKKSGRNRVV 256 + P +T+S G++ C ++ ++ ++++AD ALY AK +GRNR + Sbjct: 306 RVHKKP---VTVSIGVS--CAQQTLHQGRDMVFLTRLLHQADLALYRAKSAGRNRTM 357 >gi|297568620|ref|YP_003689964.1| response regulator receiver modulated diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] gi|296924535|gb|ADH85345.1| response regulator receiver modulated diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] Length = 305 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 13/164 (7%) Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G+ N F + LS++ DID+FK NDN+GH GDK + + Sbjct: 142 LDGLTGIPNRRHFDELFDKEMRRCLRNGLPLSVIMTDIDHFKGFNDNYGHGAGDKCLQKV 201 Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP 214 + L P + R GGEEF A G+ A +A LR +E I + S+ P Sbjct: 202 AGALSGSLVRPGDSICRYGGEEFVALLPGTDAAGAREVAERLRVAVEALAITHEHSSAAP 261 Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +++ A R + ++ RADQALY AK++GRNRV Sbjct: 262 VVTVSLGAATLDPRRDSETDRQPLLSRADQALYAAKEAGRNRVA 305 >gi|254974566|ref|ZP_05271038.1| putative signaling protein [Clostridium difficile QCD-66c26] gi|255091955|ref|ZP_05321433.1| putative signaling protein [Clostridium difficile CIP 107932] gi|255313689|ref|ZP_05355272.1| putative signaling protein [Clostridium difficile QCD-76w55] gi|255516373|ref|ZP_05384049.1| putative signaling protein [Clostridium difficile QCD-97b34] gi|255649473|ref|ZP_05396375.1| putative signaling protein [Clostridium difficile QCD-37x79] gi|306519550|ref|ZP_07405897.1| putative signaling protein [Clostridium difficile QCD-32g58] Length = 514 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 16/176 (9%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 Y + + D L+ + N F + + G + L I+ D+D FK+INDNFG Sbjct: 339 KYEELRTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKKDALFII--DLDDFKEINDNFG 396 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206 HP GD V+ +D++ FG VGR+GG+EF +E A +L +++ ++ Sbjct: 397 HPFGDFVLKTFADKIQASFGNKDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDN 456 Query: 207 QINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 ++S S ++S GIA R ++ S + AD+ALY K SG+N F + Sbjct: 457 YTDLSF--SFDSSVSIGIA-RYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEE 509 >gi|218681177|ref|ZP_03529074.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 894] Length = 532 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 102/212 (48%), Gaps = 29/212 (13%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNR-------ISQLSRIDCLSGLLNHSAF--- 118 LSL ++ ++ L+ +I +L +L + R ++ L+ D L+GL N S+F Sbjct: 52 LSLTAATLILATLILFIP--LLVKLRTEHRRTLDFEIKLTHLAHTDTLTGLGNRSSFNEA 109 Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 +SL S++ D+D+FK ND+FGHP GD V++ ++ L F V R Sbjct: 110 LNGLFASLERTGAGFSMLLVDLDHFKATNDSFGHPAGDAVLSHVASALQKTFRAGDIVAR 169 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-----GPSIHITISAGIA-ERC 228 LGG+EFAA G S+ A L I E + I++ G + ++ S G A Sbjct: 170 LGGDEFAALLPGISD------AATLEGIAERAVAAIATECHFEGRLLPVSASLGGALVPG 223 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 H + ++ AD ALY AK RN V F + Sbjct: 224 HASDEAALMRTADLALYAAKAR-RNTAVIFDE 254 >gi|254458309|ref|ZP_05071735.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207085145|gb|EDZ62431.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 418 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 15/189 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 K+L + ++ +S D L+ L N F + ++ + DID+FKQ N Sbjct: 224 KKLQRANKKLENVSYTDSLTSLHNRRYFNFIYDRELKRAKRTKSYITFMMLDIDFFKQYN 283 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD + +S L P +V RLGGEEF + + E +A LA ++ Sbjct: 284 DTYGHLEGDFALKSVSKVLRDSLKRPSDYVFRLGGEEFGVVLIDTDESNSARLAREICDA 343 Query: 203 IENSQI-NISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +I + SS + +TIS G +A+ E I +I RAD+ LY AK+SGRN + Sbjct: 344 VRAREIKHESSKANEFLTISIGVVCCVADEALDEEI--LISRADEMLYKAKESGRNGYII 401 Query: 258 FSDIENNTC 266 +++ T Sbjct: 402 TTNVSEATA 410 >gi|166712018|ref|ZP_02243225.1| GGDEF family protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 954 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN S + ++ + L++V D+D+FKQ+ND+ GH VGD V+A + Sbjct: 790 DALTGLLNRSGILEAMAAELQGCAHGEHPLAVVLIDLDHFKQVNDDHGHLVGDAVLAKVG 849 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L VGR GGEE G + Q L + + + + + + + +T Sbjct: 850 ARLTACLRDSDKVGRYGGEELLLLLPGMTRQSQRRL-RAIHEALSLAPYEVGAARPLQVT 908 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G++ + ++++ RAD+ALY AK+SGRNR+ Sbjct: 909 CSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 944 >gi|71908661|ref|YP_286248.1| diguanylate cyclase [Dechloromonas aromatica RCB] gi|71848282|gb|AAZ47778.1| diguanylate cyclase [Dechloromonas aromatica RCB] Length = 346 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID FK +NDNFGH +GD+V+ L+ + F + R GGEEF A L +E++ A+ Sbjct: 205 DIDRFKLVNDNFGHLIGDEVLIMLAQVMNQSFRFDDQLFRFGGEEF-IALLQPTEEKFAL 263 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 A L + N + + S H+T+S G + + + I RAD+ALY AK+ GRNR Sbjct: 264 AA--LERFRTNVEKQLFSRVG-HVTVSIGFSSLMPNDTPTDAIDRADEALYYAKRHGRNR 320 Query: 255 VVCFS 259 V C+ Sbjct: 321 VDCYE 325 >gi|295095698|emb|CBK84788.1| diguanylate cyclase (GGDEF) domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 448 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 17/162 (10%) Query: 107 DCLSGLLNHSAFISSLGS----YNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N F +L EK SI+ DID FK INDN+GH VGD+VI + D Sbjct: 285 DPLTQIYNRKYFYEALPRIRSLRTEKGASIMMLDIDNFKSINDNWGHLVGDRVILAVVDI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH---- 217 + RLGGEEF + ++A +A +R+ ++ +GP H Sbjct: 345 IKDSIRDNDIFARLGGEEFGLLLPDTDGKQAIAVAERIRQNVQQ-----RTGPGYHYALP 399 Query: 218 --ITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 +T+S G+ S I R D+ALY AK +G+NR+V Sbjct: 400 VKVTLSIGVCSAIQNNVNSNDIMRDVDEALYEAKHNGKNRIV 441 >gi|190573536|ref|YP_001971381.1| putative two-component system sensor kinase/response regulator fusion protein with GGDEF signalling domain [Stenotrophomonas maltophilia K279a] gi|190011458|emb|CAQ45076.1| putative two-component system sensor kinase/response regulator fusion protein with GGDEF signalling domain [Stenotrophomonas maltophilia K279a] Length = 1008 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N AF +L L +V DID+FK +ND H +GD V+ Sbjct: 847 AREDALTGLANRRAFDETLARDFARSQRSGHPLCLVVLDIDHFKDVNDRHSHSIGDAVLV 906 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + R GGEEFA + +EAA L LR + + + + + Sbjct: 907 QVARLIAAACRDSDLPARTGGEEFALLLNDTRLEEAAQLCARLRGLFHDHP-DWAGVAGL 965 Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNR 254 +T SAG+ E + ++Y RAD+ALY AK GR+R Sbjct: 966 RVTFSAGLVELDADDRTPALLYQRADRALYRAKSDGRDR 1004 >gi|167625210|ref|YP_001675504.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167355232|gb|ABZ77845.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 354 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 84/168 (50%), Gaps = 19/168 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDK 153 +S LS D L+G LN SL + +EK I DIDYFK +ND GH VGD+ Sbjct: 173 LSYLSTRDSLTGALNRHQLDVSLITASEKAKMEQATCIAAIDIDYFKDVNDVHGHDVGDQ 232 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 VI + + + RLGG+EF +++ E+A+ KI+ ++ G Sbjct: 233 VIKTVVKLINCHCRKADLLFRLGGDEFLLL-FDNTKAESAL------KIMRTIGQEVAKG 285 Query: 214 -----PSIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + +T+S GIAE E + + RAD ALY AK +GRN+V Sbjct: 286 IVETCPEVDSVTLSTGIAESIVGEELELWVKRADLALYEAKHAGRNQV 333 >gi|167031415|ref|YP_001666646.1| diguanylate cyclase [Pseudomonas putida GB-1] gi|166857903|gb|ABY96310.1| diguanylate cyclase [Pseudomonas putida GB-1] Length = 427 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 118/253 (46%), Gaps = 34/253 (13%) Query: 28 MIYFSIFFSIFIATVI--FIANIFLFYIGLTPFYGLEYILVENLSL-VIISITISLLLGY 84 M+Y +F +FI V+ A L +T G+ ++L + L ++I S ++ Sbjct: 171 MVY-PLFIGVFILLVVQYLRAPRPLHAALITGLLGIFWMLPQTFILPFTLNIMCSQVMLM 229 Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIND 144 I+ ++ E + Q++ D L+GL A + I D+D+FK+ ND Sbjct: 230 IAAAVAHEAY-------QMAFRDELTGLPGRRALNERMQRLGRNYVIAMTDVDHFKKFND 282 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH VGD+V+ ++ +L V R GGEEFA G + +E +R++I Sbjct: 283 THGHDVGDQVLRLVASRLSKV-TGGGRAYRYGGEEFALVFAGKTAEECVPHVEAVREVIA 341 Query: 205 NSQINI-------------------SSGPSIHITISAGIAERC--HKEPISTIIYRADQA 243 N +++ S G ++ +TIS G+AER H+ P ++ ADQA Sbjct: 342 NYVMHLRDQHNRPQDDTAGRQRRAGSGGGTVSVTISIGVAERHADHRNP-EAVLKSADQA 400 Query: 244 LYVAKKSGRNRVV 256 LY AK +GRN V+ Sbjct: 401 LYSAKGAGRNCVM 413 >gi|89094508|ref|ZP_01167447.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor [Oceanospirillum sp. MED92] gi|89081244|gb|EAR60477.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor [Oceanospirillum sp. MED92] Length = 402 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 15/166 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +IS + D L+ L N F I N LS+ D+D+FK++ND GH G Sbjct: 240 KISYFANYDPLTDLFNRRHFFDQFNLAIREAEESNTPLSLCVCDLDHFKEVNDTLGHQAG 299 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINI 210 D ++ ++ L FVGR GG+EF ++ +AA + +R + E + + + Sbjct: 300 DNILTTFAEILRKNIRENDFVGRFGGDEFVICFPDATSDQAAEIVERIRTRFAEYNALKL 359 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRV 255 S +T + GIAE H ++ +AD+ALY AK++GRN+V Sbjct: 360 S------VTSTFGIAELSHAANTDDLLLEKADKALYKAKENGRNQV 399 >gi|332531213|ref|ZP_08407126.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624] gi|332039320|gb|EGI75733.1| diguanylate cyclase [Hylemonella gracilis ATCC 19624] Length = 527 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 86/191 (45%), Gaps = 23/191 (12%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFKQI 142 L++L R+S R D L+G LN AF+ L + K L + DID FK++ Sbjct: 336 LRKLQAELERLSAQVRHDGLTGALNRQGLDEAFVRELSTVRRKDAPLCVALLDIDNFKRL 395 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILAND 198 ND GH GD + L + R GGEEF L + + L + Sbjct: 396 NDARGHETGDVALQHLVAVAKENLRPQDTLARYGGEEFVILLPETGLEQAMEVMIRLQRE 455 Query: 199 LRK---IIENSQ-INISSG--------PSIHITISAGIAERCHKEPISTIIYRADQALYV 246 L K + Q + SG I IT SAG+A+ E ++RADQA+Y+ Sbjct: 456 LSKRFFLARPKQGVKTESGGEVASADQEKIFITFSAGVAQLTVDETAEQALHRADQAMYL 515 Query: 247 AKKSGRNRVVC 257 AK++G+NRVV Sbjct: 516 AKRAGKNRVVA 526 >gi|330830443|ref|YP_004393395.1| PAS:GGDEF domain-containing protein [Aeromonas veronii B565] gi|328805579|gb|AEB50778.1| PAS:GGDEF domain protein [Aeromonas veronii B565] Length = 804 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 11/168 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKV 154 + +L+ D L+GL N L E+ L+++F D+D+FK IND FGH GD + Sbjct: 493 MRRLAFYDPLTGLPNRRLLQQRLKELMEQETPRPLALMFIDLDHFKPINDTFGHETGDIL 552 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS-QINISSG 213 + +++++ V RLGG+EF L S E +A+ L + + + Q+ G Sbjct: 553 LNMVAERMSHCVRKQDLVARLGGDEF-VILLPDSGDEVLAVADKLHQQLRHPFQL---EG 608 Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I+ S G+A H E T+++ ADQA+Y AK GR RV +++ Sbjct: 609 QELLISSSIGLALYPEHGEDAKTLMHHADQAMYQAKNRGRGRVCLYTE 656 >gi|262395423|ref|YP_003287276.1| GGDEF domain protein [Vibrio sp. Ex25] gi|262339017|gb|ACY52811.1| GGDEF domain protein [Vibrio sp. Ex25] Length = 412 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 22/175 (12%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 QL+ D L+ + + A L +K +I D+D+FK+ ND +GH GD V+ ++ + Sbjct: 236 QLAFTDSLTRVPSRRALDLDLKHMGKKFTIAMLDVDHFKKFNDTYGHDTGDDVLKMVASR 295 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI------------- 208 L G V R GGEEF G E + RK I ++ Sbjct: 296 LTKTPGGAK-VYRFGGEEFTIVFKGKYADECKEFLEEARKSIAEYEMILRDEESRPDNHK 354 Query: 209 --------NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + S S+ +T S G A+ + + +I AD+ALY AKK+GRN V Sbjct: 355 QGQKKRGNDSSRRKSVFVTASFGAADSKNGQAPQDVIKLADEALYKAKKAGRNCV 409 >gi|225629101|ref|ZP_03787134.1| GGDEF domain protein [Brucella ceti str. Cudo] gi|260167407|ref|ZP_05754218.1| response regulator PleD [Brucella sp. F5/99] gi|261756817|ref|ZP_06000526.1| GGDEF:Response regulator receiver [Brucella sp. F5/99] gi|225615597|gb|EEH12646.1| GGDEF domain protein [Brucella ceti str. Cudo] gi|261736801|gb|EEY24797.1| GGDEF:Response regulator receiver [Brucella sp. F5/99] Length = 462 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S R S D L+GL N ++ + LSI+ D+D+FKQ+N+ +GH Sbjct: 289 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 348 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ S +L + R GGEEF + Q A +A +R I+ + Sbjct: 349 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 408 Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G +T+S G+A R + + + RA AL AK+SGRNR+V Sbjct: 409 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 458 >gi|218672484|ref|ZP_03522153.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56] Length = 305 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 106/216 (49%), Gaps = 23/216 (10%) Query: 53 IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI-----LKELFISYNRISQLSRID 107 IG P + IL+E L ++ G ++G + + EL S +I Q++ D Sbjct: 8 IGWFPPENGQSILLETRKLAVLGAG-----GEVTGVLGVSRDVTELNASREKIRQMAFYD 62 Query: 108 CLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 ++ L N F +S S + ++ DID+FK +ND GHPVGD+++ ++ Sbjct: 63 PVTSLPNRLLFNERLQKVVSDASSQRRRTGVMLIDIDHFKVVNDTMGHPVGDQLLCQVAT 122 Query: 161 QLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +L V RLGG+EFA + +++ + + L + E+ ++ G +++ Sbjct: 123 RLKKSVRDLDTVARLGGDEFAILLPEIQTTDDLDWVACSILERFKESFLLD---GKEVYV 179 Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 + S GIA ++ ++ AD A+Y+AK+SGRN Sbjct: 180 SCSVGIAISPDDSTDVNDLVKYADSAMYLAKRSGRN 215 >gi|209883884|ref|YP_002287741.1| ggdef domain [Oligotropha carboxidovorans OM5] gi|209872080|gb|ACI91876.1| ggdef domain [Oligotropha carboxidovorans OM5] Length = 763 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 96 SYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + RI L+R D L+GL N + F + +++F D+D FK++ND GHP G Sbjct: 329 TAERIEHLARYDALTGLPNRTHLEDEFERLTAQGMQSCALLFIDLDQFKKVNDTLGHPAG 388 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINI 210 D ++ ++++L + T V R GG+EF + S EAA LA + + + S+I Sbjct: 389 DALLCQVANRLRRILNTTGIVARFGGDEFVVLLPIQHSRDEAAQLAGHIIRTL--SEIYD 446 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252 +G I + S G+ I+ AD A+Y AK GR Sbjct: 447 VNGHQIMVGASVGVGVMPEDGRTFEQILKCADMAMYHAKADGR 489 >gi|37680206|ref|NP_934815.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|37198953|dbj|BAC94786.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 515 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 77/154 (50%), Gaps = 13/154 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ LN AF L EK S++ FDID+FKQIND +GH GD+V+ ++D Sbjct: 362 DPLTHTLNRRAFRHDLTQMLEKQAAFSLIGFDIDHFKQINDRYGHLGGDQVLIDVAD--- 418 Query: 164 VVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V GT + G R GG+EF + + E +R+ IE + IH T Sbjct: 419 -VIGTVLQEGDRFYRFGGDEFGILSSVTERSELECYLEAIRERIEKTACYYQD-TEIHCT 476 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +S G A C +E + ++ + D LY +K GRN Sbjct: 477 LSIGAAVHCDEE-LEDLVQKMDVQLYRSKDKGRN 509 >gi|307154420|ref|YP_003889804.1| PAS/PAC sensors-containing diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306984648|gb|ADN16529.1| diguanylate cyclase with PAS/PAC sensor [Cyanothece sp. PCC 7822] Length = 882 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 11/170 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQINDNFGHPVGD 152 + L RID L+ + N F G E+ LS++ D+DYFK+ ND +GHP GD Sbjct: 713 LEHLIRIDPLTQVPNRRYFDEYFQQEWQRGIREEQPLSLILLDVDYFKRYNDYYGHPAGD 772 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + +A ++ + P V R GGEEFA ++ + I+A ++ ++ + Sbjct: 773 RCLAAVAQAVKQSLKRPADQVARYGGEEFAVILPHTALEGGMIMAKQIQDSLQQFSLPHK 832 Query: 212 SGP-SIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258 P S +T+S GI+ +S+ +I +ADQALY AK+ GRNR + Sbjct: 833 RSPISNCVTVSLGISCIIPSSFMSSERLIIQADQALYQAKQQGRNRYAIY 882 >gi|293401601|ref|ZP_06645743.1| putative diguanylate cyclase (GGDEF) domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304859|gb|EFE46106.1| putative diguanylate cyclase (GGDEF) domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 634 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 15/182 (8%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-----LGSYNEKLSIVFFDIDYF 139 I KELF+ S D L+ L N +A S + + N+ + DID F Sbjct: 460 IDEEKRKELFMKKKMES-----DSLTSLYNKAATRSYIQQKLMENNNQYYAFYILDIDNF 514 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K IND +GH GD+VI ++ L F +GR+GG+EF A +S+QEA A L Sbjct: 515 KDINDAYGHAAGDEVIVTFANILKNQFTNDAIIGRIGGDEFVALQAVASKQEAQAKAEAL 574 Query: 200 RKIIENSQINISSGPSIH-ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I +++ G + I+ S G+A H + ++ + AD+ALY AK++G+N+ Sbjct: 575 VNIYHSAK---RQGLCHYAISTSIGVAVTIHNLDNFDSLYHNADKALYEAKENGKNQYRM 631 Query: 258 FS 259 + Sbjct: 632 YE 633 >gi|229515598|ref|ZP_04405057.1| GGDEF family protein [Vibrio cholerae TMA 21] gi|229347367|gb|EEO12327.1| GGDEF family protein [Vibrio cholerae TMA 21] Length = 372 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 ++L+ ++ LS D L+GL N + L + V DID FK +N Sbjct: 193 QQLYQVNRQLEALSMTDSLTGLPNRRKAMRQLVLHWNLAQDNQQPFVCVMIDIDGFKAVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH VGDKV+ +++ L F + V RLGG+EF ++ +A + I Sbjct: 253 DHHGHDVGDKVLTTIANMLRDHFRSDDLVCRLGGDEFLVICPETNTAGGVYIAEQVCCAI 312 Query: 204 ENSQINISSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I++ + ++S G+A + H E ++ ADQA+Y+AK SG+NRV F Sbjct: 313 QQQVISLENNIRWQGSVSMGVAAFASNMKDHHE----LLRAADQAVYLAKNSGKNRVCAF 368 >gi|229159708|ref|ZP_04287718.1| Sensory box/GGDEF [Bacillus cereus R309803] gi|228623787|gb|EEK80603.1| Sensory box/GGDEF [Bacillus cereus R309803] Length = 569 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ N + +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIVENIEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKKHTQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|291295452|ref|YP_003506850.1| diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Meiothermus ruber DSM 1279] gi|290470411|gb|ADD27830.1| diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Meiothermus ruber DSM 1279] Length = 609 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 10/175 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141 +L +L + +L+R D L+ L N +L Y +S+ DID+FKQ Sbjct: 433 LLDKLRQQSAELERLARQDPLTRLNNRRYLEENLEREFAAAKRYKFPISVALVDIDHFKQ 492 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND F H VGD V+ + L F R GGEEFA + A I +R+ Sbjct: 493 INDTFSHQVGDDVLRIVGQILEASCRGVDFAARYGGEEFALVFPQTDLPGALIACERIRQ 552 Query: 202 IIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IE Q N ++ P + +T+S G++ ++ AD+ LY AK++GRNRV Sbjct: 553 RIE--QHNWAALHPDLKVTVSIGVSSDPSLPNHEKLLAAADEQLYAAKRAGRNRV 605 >gi|254522442|ref|ZP_05134497.1| ggdef domain protein [Stenotrophomonas sp. SKA14] gi|219720033|gb|EED38558.1| ggdef domain protein [Stenotrophomonas sp. SKA14] Length = 580 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 5/161 (3%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVI 155 + QL+ D L+GLLN A + + + + ++ D+D FK IND GH GD+V+ Sbjct: 410 LRQLAGTDDLTGLLNRRALDQRVQQRHAEGAAAAVVILLDVDRFKSINDGHGHDAGDEVL 469 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L + R GGEEF LA LR ++ I + G + Sbjct: 470 VQVAQLLQRHLRRSDSIARYGGEEFLVLLADGDLDAGRRLAESLRLALQQLDIRVGGGTA 529 Query: 216 IHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 + +T S G+AE T++ AD A+Y AK GR+RV Sbjct: 530 LRVTASFGVAEGGTDALGWRTLLRAADAAMYQAKAQGRDRV 570 >gi|218458168|ref|ZP_03498259.1| hypothetical protein RetlK5_01397 [Rhizobium etli Kim 5] Length = 232 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 19/182 (10%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L +S ++ L+ D L+G++N AF + N S++ DID FK ND Sbjct: 44 LRLSAEQLRNLAETDGLTGIVNRRAFDEIFARETAGSARKNTPFSLLMVDIDRFKAYNDT 103 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GHP GD+ + +S L P V R GGEEF +S + A I+A + + Sbjct: 104 YGHPAGDQCLRVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLA 163 Query: 205 NSQINISSG-------PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I + SG SI I+ + G R + ++ AD ALY AK GRNR++ Sbjct: 164 KENI-LHSGSEFGCVTASIGISCATGATLRASP---NRLLAEADTALYEAKTQGRNRILA 219 Query: 258 FS 259 S Sbjct: 220 HS 221 >gi|160943843|ref|ZP_02091074.1| hypothetical protein FAEPRAM212_01342 [Faecalibacterium prausnitzii M21/2] gi|158445017|gb|EDP22020.1| hypothetical protein FAEPRAM212_01342 [Faecalibacterium prausnitzii M21/2] Length = 354 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 35/241 (14%) Query: 30 YFSIFFSIFIATVIFI-------ANIF-----LFYIGLTPFYGLEYIL---VENLSLVII 74 YF I+ +++ A ++++ A F + LT F G E ++ + L + + Sbjct: 119 YFYIYVAMYYAAMLYLMVATARTAAAFQNRSRMLIYPLTLFLGAETVIQLALPELHVTWL 178 Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI-VF 133 +T+ +L YI S E++ +++D L+GLLN +++++ + V Sbjct: 179 CVTLLSVLYYIYCS---EMW---------NQLDALTGLLNQNSYLNRTAEMRRSGGVLVV 226 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 FD+D FKQIND +GH GD +A ++D + + + R+GG+EF L E+ A Sbjct: 227 FDVDDFKQINDRYGHLQGDVCLAEIADCIKKAYARCGYCYRIGGDEF--CVLLKDEESEA 284 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A L+ ++ + + P++ + +A E + + RAD+ALY AKK + Sbjct: 285 RCAKTLQALLAERRKVFAILPTVSLGSAAF-----SGEDVVAVKDRADRALYCAKKEQKA 339 Query: 254 R 254 R Sbjct: 340 R 340 >gi|260682639|ref|YP_003213924.1| putative signaling protein [Clostridium difficile CD196] gi|260686239|ref|YP_003217372.1| putative signaling protein [Clostridium difficile R20291] gi|260208802|emb|CBA61696.1| putative signaling protein [Clostridium difficile CD196] gi|260212255|emb|CBE02985.1| putative signaling protein [Clostridium difficile R20291] Length = 537 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 16/176 (9%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 Y + + D L+ + N F + + G + L I+ D+D FK+INDNFG Sbjct: 362 KYEELRTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKKDALFII--DLDDFKEINDNFG 419 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206 HP GD V+ +D++ FG VGR+GG+EF +E A +L +++ ++ Sbjct: 420 HPFGDFVLKTFADKIQASFGNKDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDN 479 Query: 207 QINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 ++S S ++S GIA R ++ S + AD+ALY K SG+N F + Sbjct: 480 YTDLSF--SFDSSVSIGIA-RYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEE 532 >gi|144898224|emb|CAM75088.1| GGDEF family protein [Magnetospirillum gryphiswaldense MSR-1] Length = 353 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 26/176 (14%) Query: 107 DCLSGLLNHSAFISSLGSY--------------------NEKLSIVFFDIDYFKQINDNF 146 D L+GL N F +G E+ + DID+FK++ND F Sbjct: 165 DTLTGLKNRKTFDEKIGRIIAQSQTLAQIVPVERRQHEDGEQHWLGMLDIDHFKRVNDTF 224 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+V+ S + VF + + R GGEEF +S A R +E Sbjct: 225 GHVFGDEVLLLFSALMRKVFRSDDLLFRFGGEEFVVVLAPTSALHAQQAFERFRTAVEG- 283 Query: 207 QINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 S P + +T+S G H + S +I +AD+ALY AK++GRN+V + D+ Sbjct: 284 ----FSFPQVGRVTVSIGFVAIKHGDIASAVIGQADEALYWAKRNGRNQVCLYEDL 335 >gi|78777681|ref|YP_393996.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78498221|gb|ABB44761.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM 1251] Length = 615 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 8/169 (4%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ S D ++GL N +S E +++ D+D+FK +ND +GH VG Sbjct: 437 KLRDTSLRDGMTGLYNRRFLEEIIDKIMSQANRNKETYAVLMLDVDFFKMVNDTYGHDVG 496 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DKVI LS L R GGEEF ++++ +AN + ++ Sbjct: 497 DKVIVALSKILKNSIRESDLAIRYGGEEFLILLSNATDEGIMQVANKIHSNFAALSFDVG 556 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + ++ TIS GI++ + I I AD ALY AK +GRN++V F Sbjct: 557 TSETLKKTISIGISKFPTDGDTIWKCIKYADTALYEAKNTGRNKIVEFK 605 >gi|332767611|gb|EGJ97804.1| diguanylate cyclase domain protein [Shigella flexneri 2930-71] Length = 208 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPV 150 ++ + D ++GLLN F I+ G + S++ D D FK IND +GH Sbjct: 45 EQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSK 104 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ L+ L V R GGEEF + A LA +R + ++++I Sbjct: 105 GDEVLCALARPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSI 162 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S P T+S G+A E I + R D ALY AK GRNRV+ Sbjct: 163 SGLPRF--TVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 207 >gi|260550228|ref|ZP_05824441.1| WspR [Acinetobacter sp. RUH2624] gi|260406756|gb|EEX00236.1| WspR [Acinetobacter sp. RUH2624] Length = 593 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 ++ ++ D L+G+ N S ++ + SY +K S ++ DID FK +ND +GH VGD Sbjct: 430 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKDVNDQYGHIVGD 489 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 +VI ++DQL + R GG+EF +A +LA +R I +IN+S Sbjct: 490 QVIKRITDQLKANVRASDLIVRYGGDEFLILLEQVPFLDARLLAEKIRIAIALEEINLSG 549 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S +H+++S G A ++ +AD++L AK GRN V Sbjct: 550 SNEKLHVSVSIGFA--IGATSWMELLEKADRSLLRAKARGRNVV 591 >gi|296139819|ref|YP_003647062.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Tsukamurella paurometabola DSM 20162] gi|296027953|gb|ADG78723.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Tsukamurella paurometabola DSM 20162] Length = 836 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 20/163 (12%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ LL + F+ E+ L++++ D+D FK+IND+ GH VGD V+ + Sbjct: 417 DDLTELLGRTTFVERATRVVEERRADGAELAVLWVDLDSFKRINDSLGHKVGDLVLRVAA 476 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN-DLRKIIENSQINIS-----SG 213 +L+ VGRLGG+EF A +L N D+ E ++ ++ G Sbjct: 477 QRLIAACAPDDLVGRLGGDEFIAL-------RPRVLPNDDVLAWTERVRLALARPMEVDG 529 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+ +T S G+ E ++ I ++ D AL AK+SGRNRVV Sbjct: 530 ISLTVTCSIGLVESTAQDDIGQLLIDGDLALLHAKRSGRNRVV 572 >gi|167838567|ref|ZP_02465426.1| hypothetical protein Bpse38_18802 [Burkholderia thailandensis MSMB43] Length = 462 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + LF ++ + + + D L+ + N F ++ +++V D+D+FKQ N Sbjct: 275 RRLFDAHTSLVRTASHDALTMVYNRRYFNEQFEHAFHYARRHHLPIALVMVDVDHFKQYN 334 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V FV R GGEEFA G+ E+ AA +A R+ Sbjct: 335 DTFGHLQGDTCLAAVAAALSSVASRATDFVARYGGEEFAVVLPGTDERGAAAIAEQARQS 394 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E ++ AD LY AK GRN Sbjct: 395 VERLRIAADTTPG-YVTVSAGYAASSGNPFETPGALVAAADAGLYRAKMLGRN 446 >gi|197118450|ref|YP_002138877.1| PAS domain-containing sensor diguanylate cyclase [Geobacter bemidjiensis Bem] gi|197087810|gb|ACH39081.1| sensor diguanylate cyclase, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 300 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + Y+ ++F D+D FK++ND++GH GD+V++F++ L GR GGEEF Sbjct: 165 MSRYDIPFGVLFMDLDDFKKVNDDYGHETGDRVLSFVAGTLSANSRPFDLYGRWGGEEFV 224 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 + + LRK++E S + + + +TIS G ++ + +++ RAD Sbjct: 225 GIVRNVTAANLKHMGQRLRKLVEKSFLLVGE-ERLRVTISIGATMALPEDTLQSLLQRAD 283 Query: 242 QALYVAKKSGRNRVV 256 +Y +K +G+NR+ Sbjct: 284 LLMYQSKSAGKNRLT 298 >gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans] gi|133739498|emb|CAL62549.1| Hypothetical protein, PAS and GGDEF domain [Herminiimonas arsenicoxydans] Length = 313 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 22/173 (12%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QL D L+G+ + F L + E L ++F D+DYFK ND +GH GD Sbjct: 143 LEQLVVHDTLTGIYSRKYFEDQLRTRWDQLIDTQESLVMMFIDVDYFKGFNDTYGHIAGD 202 Query: 153 ----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 KV + L D L FV R GGEEF A + ++A + A +L + + + I Sbjct: 203 DALRKVASILDDSLR---RDSEFVARFGGEEFIVLATEMTAEQAIMHAENLCRSVRDLDI 259 Query: 209 NISSGPSIHITISAGIAERCHKEPIS-----TIIYRADQALYVAKKSGRNRVV 256 ++ P +TIS G+ +P S ++ +AD ALY AK GRN+V Sbjct: 260 PHAASPHQFLTISCGV---VRMKPSSMAQPEVLLEQADSALYQAKARGRNQVA 309 >gi|15888624|ref|NP_354305.1| response regulator PleD [Agrobacterium tumefaciens str. C58] gi|15156350|gb|AAK87090.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 456 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 11/177 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + L ++ +L+ +D L+GL N S L +SI DID FK +N Sbjct: 278 EHLRLNLQHTMELAIVDGLTGLNNRRYLDSHLKILFDRAAVRGRPISICMTDIDRFKLVN 337 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGD+V+ + ++ R GGEEF + + AA +A LR I+ Sbjct: 338 DTYGHDVGDEVLREFAARIRSTVRGADLACRYGGEEFVVVMPDTPIELAASVAERLRAIV 397 Query: 204 ENSQINISS-GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 E+ + S + IT S GIA P I+ +AD+ALY AK +GRNRVV Sbjct: 398 EDKPFYVRSIDRELSITASLGIATSSGAFGAP-DEILKQADKALYEAKHAGRNRVVA 453 >gi|88858304|ref|ZP_01132946.1| GGDEF family protein [Pseudoalteromonas tunicata D2] gi|88819921|gb|EAR29734.1| GGDEF family protein [Pseudoalteromonas tunicata D2] Length = 340 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 8/133 (6%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + DID+FK+IND +GH GD+V+ L+ ++ F V R GGEEF ++++ Sbjct: 197 LAMVDIDHFKKINDTYGHICGDEVLLLLAQRMSAFFRASDLVFRFGGEEFVIVFEPTTQE 256 Query: 191 EAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKE-PISTIIYRADQALYVAK 248 ++ L +E QI + P I +T+S GIA + PIS +I AD+ALY AK Sbjct: 257 ---LINKRLAAFME--QIRSTHFPFIKQLTLSIGIARMSPYDFPIS-VIENADKALYFAK 310 Query: 249 KSGRNRVVCFSDI 261 SGR++V+ +SD+ Sbjct: 311 NSGRDQVIFYSDV 323 >gi|315445609|ref|YP_004078488.1| diguanylate cyclase (GGDEF) domain-containing protein [Mycobacterium sp. Spyr1] gi|315263912|gb|ADU00654.1| diguanylate cyclase (GGDEF) domain-containing protein [Mycobacterium sp. Spyr1] Length = 299 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 11/170 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 ++ ++ L+ D L+GL N F + ++++ D+D FK+ ND FG Sbjct: 127 LAEDQAQHLAMHDPLTGLANRRYFNRILHREVRRSRRNGSPITVIAIDVDNFKKYNDEFG 186 Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 H GD + LS L+ P R+GG+EFA S +A +A + K E + Sbjct: 187 HLAGDHCLQELSTVLLGAARRPSDLAARIGGDEFAVLCGDSDAADAQAIAESIVK--EFA 244 Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 + I G S +T+SAG+A + E ++ AD+ALY AK++GRNRV Sbjct: 245 DLRIGFGASEPVTVSAGVATMIPRDEDEKWLVNEADKALYNAKRAGRNRV 294 >gi|296102185|ref|YP_003612331.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056644|gb|ADF61382.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 704 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 105/203 (51%), Gaps = 23/203 (11%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQL-SRIDCLSGLLNH--------- 115 V L L+ + + ISL+ + + L + + NR +L +R D L+GL N Sbjct: 213 VTTLCLLGMMLIISLIDSHWRTNRLTDNLQALNRQLELQARFDALTGLANRHQMDLRMQD 272 Query: 116 ---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 SA +S N++ +++F D+D+FKQ+ND +GH VGD+++ ++ ++ M + Sbjct: 273 CLRSALLS-----NKQFAVIFLDVDHFKQVNDTWGHNVGDELLITIAQRITARLTREMTL 327 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHK- 230 RLGG+ F L E + L + L ++++ + +S G ++ T+SAG++ Sbjct: 328 ARLGGDAF---ILLVPECDDDKLQSLLSTLLDDVRRPLSVCGHTLSTTLSAGVSRYPQDG 384 Query: 231 EPISTIIYRADQALYVAKKSGRN 253 E + + +AD A+ KK G+N Sbjct: 385 ETLHELKLKADAAMQYVKKQGQN 407 >gi|218780814|ref|YP_002432132.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218762198|gb|ACL04664.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 593 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 95/203 (46%), Gaps = 12/203 (5%) Query: 62 EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118 +YI +S TI+ L + KE ++ +I +S D L+GL N F Sbjct: 391 DYISKSRADAATLSRTIATALE--KARLRKETRLAQEKIVDMSITDELTGLSNRRYFNEV 448 Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 + + L++ D+D+FK +ND +GH GDKV+A L F + + R Sbjct: 449 VDIEVQKARNNGSPLTLCMMDLDHFKNVNDTYGHLTGDKVLAETGALLKQGFRSHDMIFR 508 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 GGEEFA + + A R+ ++ ++ + + ITIS GIA ++ + Sbjct: 509 YGGEEFAVILPDTDLEHAKRACERFRESVQEHVMD-AKVKQVKITISIGIANMPGEQIME 567 Query: 235 T--IIYRADQALYVAKKSGRNRV 255 +I AD ALY AK+ GRNRV Sbjct: 568 AGELIDAADHALYRAKELGRNRV 590 >gi|83591897|ref|YP_425649.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC 11170] gi|83574811|gb|ABC21362.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC 11170] Length = 683 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 14/169 (8%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F ++S N++L+++F D+D+FK +ND+ GH GD+++ ++ Sbjct: 263 DTLTGLPNRVLFQDRLLTALASARRRNDQLAVLFVDLDHFKTVNDSLGHSFGDQLLQQVA 322 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIE--NSQINISSGPSI 216 +L + R+GG+EF A G Q + A++AN +I+E + G + Sbjct: 323 TRLSQCLRDSDTLARMGGDEFTIALTGDGHQRDYAMIAN---RILETLRRPFTLEGGHEV 379 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 I S GI E + T++ AD A+Y AK SGRN F++ N Sbjct: 380 LIGSSIGITLFPNDAEDVDTLLRNADTAMYRAKASGRNAFQFFTEEMNR 428 >gi|17989005|ref|NP_541638.1| response regulator PleD [Brucella melitensis bv. 1 str. 16M] gi|23500354|ref|NP_699794.1| response regulator PleD [Brucella suis 1330] gi|161620672|ref|YP_001594558.1| response regulator PleD [Brucella canis ATCC 23365] gi|163844762|ref|YP_001622417.1| response regulator PleD [Brucella suis ATCC 23445] gi|225686396|ref|YP_002734368.1| response regulator PleD [Brucella melitensis ATCC 23457] gi|254699847|ref|ZP_05161675.1| response regulator PleD [Brucella suis bv. 5 str. 513] gi|254702985|ref|ZP_05164813.1| response regulator PleD [Brucella suis bv. 3 str. 686] gi|256015387|ref|YP_003105396.1| response regulator/GGDEF domain protein [Brucella microti CCM 4915] gi|256043507|ref|ZP_05446434.1| response regulator PleD [Brucella melitensis bv. 1 str. Rev.1] gi|256262463|ref|ZP_05464995.1| GGDEF:Response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|260564702|ref|ZP_05835187.1| GGDEF domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260568102|ref|ZP_05838571.1| GGDEF domain-containing protein [Brucella suis bv. 4 str. 40] gi|261750320|ref|ZP_05994029.1| response regulator receiver modulated diguanylate cyclase [Brucella suis bv. 5 str. 513] gi|261753594|ref|ZP_05997303.1| response regulator receiver modulated diguanylate cyclase [Brucella suis bv. 3 str. 686] gi|265989925|ref|ZP_06102482.1| response regulator receiver modulated diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1] gi|294853592|ref|ZP_06794264.1| two-component system response regulator [Brucella sp. NVSL 07-0026] gi|17984843|gb|AAL53902.1| response regulator protein [Brucella melitensis bv. 1 str. 16M] gi|23463971|gb|AAN33799.1| response regulator/GGDEF domain protein [Brucella suis 1330] gi|161337483|gb|ABX63787.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365] gi|163675485|gb|ABY39595.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445] gi|225642501|gb|ACO02414.1| GGDEF domain protein [Brucella melitensis ATCC 23457] gi|255998047|gb|ACU49734.1| response regulator/GGDEF domain protein [Brucella microti CCM 4915] gi|260152345|gb|EEW87438.1| GGDEF domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260154767|gb|EEW89848.1| GGDEF domain-containing protein [Brucella suis bv. 4 str. 40] gi|261740073|gb|EEY27999.1| response regulator receiver modulated diguanylate cyclase [Brucella suis bv. 5 str. 513] gi|261743347|gb|EEY31273.1| response regulator receiver modulated diguanylate cyclase [Brucella suis bv. 3 str. 686] gi|263000594|gb|EEZ13284.1| response regulator receiver modulated diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1] gi|263092199|gb|EEZ16496.1| GGDEF:Response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|294819247|gb|EFG36247.1| two-component system response regulator [Brucella sp. NVSL 07-0026] gi|326410768|gb|ADZ67832.1| response regulator PleD [Brucella melitensis M28] gi|326554060|gb|ADZ88699.1| response regulator PleD [Brucella melitensis M5-90] Length = 461 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S R S D L+GL N ++ + LSI+ D+D+FKQ+N+ +GH Sbjct: 288 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 347 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ S +L + R GGEEF + Q A +A +R I+ + Sbjct: 348 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 407 Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G +T+S G+A R + + + RA AL AK+SGRNR+V Sbjct: 408 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 457 >gi|330005063|ref|ZP_08305090.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] gi|328536440|gb|EGF62792.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] Length = 510 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 21/175 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 K+ +SY R + ID L+G N AF I++L + ++ ++ DID FK IND +G Sbjct: 346 KQRELSYVRQAT---IDALTGCKNRRAFDSDIAALMNDHQPFALALVDIDNFKSINDTWG 402 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 H GD V+ ++ + + V P+ + R GGEEFA A ++ R ++E Sbjct: 403 HLNGDIVLRNVAREGLQVL-QPLEISLYRYGGEEFAVVF-------PAEHIDNARTLLET 454 Query: 206 SQINISSG----PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++N+ + +T SAG+ E + EP+ ++ D+ALY AK+ G+NR++ Sbjct: 455 WRVNVERRTWREDGLTVTFSAGLGE-WNMEPLDKLVVSVDEALYKAKQQGKNRIL 508 >gi|269964099|ref|ZP_06178401.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831158|gb|EEZ85315.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 594 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 15/163 (9%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +L D ++ L N + + + ++E I DID FK IND FGHPVGD VI Sbjct: 433 DRLRHQDPMTQLENKACLAAKVSRELHSENRFIAMVDIDNFKYINDKFGHPVGDLVIQKT 492 Query: 159 SDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + F P + + R GGEEFA + E +A ++ ++ S + + G + Sbjct: 493 AEVMRDCFPKPKGICLARYGGEEFAIVFQANDEFDAKHQLDNFLTALQRSHLTLGCG-DV 551 Query: 217 HITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRV 255 T S G P+ T ++ +AD+ALY AK+ G+NRV Sbjct: 552 RFTASVGFT------PLETSYHHVVEQADKALYQAKRLGKNRV 588 >gi|253996340|ref|YP_003048404.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylotenera mobilis JLW8] gi|253983019|gb|ACT47877.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylotenera mobilis JLW8] Length = 737 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 13/175 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148 + Q + D L+ L N +S L + ++++F D+D+FK IND+ GH Sbjct: 566 QHEEAEQFAYHDPLTNLPNRRMLLSRLHHALMQTERFYRAMALMFLDLDHFKNINDSLGH 625 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD ++ ++++L+ + V R GG+EF S E A L +KII + + Sbjct: 626 DVGDMLLKEVANRLLKCVRSIDTVSRHGGDEFVIVLSEISHTEDAELV--AQKIIASFKE 683 Query: 209 NIS-SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSD 260 I +G I ++ S GIA H++P ++ AD+A+Y AK +GRNR CF D Sbjct: 684 PILINGHEIMMSTSIGIAVSKHEKPTKADELMKHADKAMYEAKGAGRNR-YCFHD 737 >gi|288573467|ref|ZP_06391824.1| response regulator receiver modulated diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569208|gb|EFC90765.1| response regulator receiver modulated diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 293 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK+IND +GH GD+V+ ++ L VGR GGEEF G+S +E + + Sbjct: 175 HFKRINDTYGHLAGDRVLRSIAKILCRELRPYDVVGRYGGEEFVMILPGASSEEGYRILD 234 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +RK I + + + + +T+S G+AE + +I RAD+A+Y AK +GR++V Sbjct: 235 RVRKRIGDRPLKVDD-DQVELTVSMGLAEYRQGMTMDGLIARADEAMYRAKDAGRDKV 291 >gi|158521752|ref|YP_001529622.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3] gi|158510578|gb|ABW67545.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3] Length = 374 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 12/172 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 ++ + +L R D L+GL N F Y +S++ DID+FK+ ND++G Sbjct: 195 MTLQQTRELIRKDELTGLYNRRYFFERFEREVYRSRRYGRTISLMMIDIDHFKEYNDSYG 254 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+V+ +S V R GGEEF +S + A +A LR+ +E Sbjct: 255 HLRGDRVLKTISRIFESSLRKIDVVARYGGEEFLVLLPETSRENAIRVAEKLRQAVEKVD 314 Query: 208 INISS---GP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 N + GP ++ ITI EPI + AD+ALY+ K GRN+V Sbjct: 315 FNEDAPNLGPCALTITIGVSAIPDDANEPILALDL-ADKALYMGKAQGRNQV 365 >gi|119897858|ref|YP_933071.1| GGDEF/EAL-domain-containing protein [Azoarcus sp. BH72] gi|119670271|emb|CAL94184.1| GGDEF/EAL-domain containing protein [Azoarcus sp. BH72] Length = 1090 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 13/169 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+GL N SA+++ S + L+++F D+D FK +ND+ GHPVGD Sbjct: 659 IQYLAHYDSLTGLPNRSAWMNQARSALSLAQRHQHILAVLFLDLDNFKTVNDSLGHPVGD 718 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINI 210 +++A ++ +L RLGG+EF A + +E AA+ L + I+ Sbjct: 719 RLLAAVAQRLAHCLREEDSFARLGGDEFVALLPRVTRAEDAAAVARKMLDALATPVVIDD 778 Query: 211 SS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 PS+ I IS ++ + T++ AD A+Y AK+ GRN F Sbjct: 779 HELAPSVSIGISLFPSD---GTDVDTLLKHADTAMYGAKEVGRNNFQFF 824 >gi|186470454|ref|YP_001861772.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] gi|184196763|gb|ACC74726.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] Length = 1061 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 12/174 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148 S RI L+ D L+ L N + F LG ++++++F D+D FK IND+ GH Sbjct: 621 SEARIEFLAEHDVLTELPNRALFTKRLGVVLDNAKHAQQRVAVLFIDLDRFKDINDSLGH 680 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENS 206 +GD ++ +S +LV + V RLGG+EF A GS+ A + L ++ Sbjct: 681 HIGDGLLRSVSRRLVQAVRSGDTVSRLGGDEFTMVLADAGSAADVARTIDERLLPLVR-- 738 Query: 207 QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + G ++ + S G+A I T++ AD A+Y AK +GRN V FS Sbjct: 739 EPHAIGGVTLQVACSVGVALYPDDGADIETLMQNADAAMYQAKAAGRNLVKFFS 792 >gi|332757681|gb|EGJ88012.1| hypothetical protein SF434370_1707 [Shigella flexneri 4343-70] gi|332760194|gb|EGJ90490.1| hypothetical protein SFK671_1708 [Shigella flexneri K-671] gi|333004453|gb|EGK23983.1| hypothetical protein SFVA6_2205 [Shigella flexneri VA-6] gi|333004777|gb|EGK24299.1| hypothetical protein SFK218_2143 [Shigella flexneri K-218] gi|333018579|gb|EGK37873.1| hypothetical protein SFK304_1898 [Shigella flexneri K-304] Length = 230 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPV 150 ++ + D ++GLLN F I+ G + S++ D D FK IND +GH Sbjct: 67 EQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSK 126 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ L+ L V R GGEEF + A LA +R + ++++I Sbjct: 127 GDEVLCALARPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSI 184 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S P T+S G+A E I + R D ALY AK GRNRV+ Sbjct: 185 SGLPRF--TVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 229 >gi|311696343|gb|ADP99216.1| diguanylate cyclase [marine bacterium HP15] Length = 939 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 16/208 (7%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSA 117 ++Y L+ LS I +I I+ LL Y + + + +L + +++LS D L+ L N S Sbjct: 728 VDYTLIWQLS--IAAIVIAFLLVYWNRKLNRLNHDLTEANETLAKLSVTDDLTKLGNRSY 785 Query: 118 FISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 F ++ ++ D D+FK+INDN+GH GD + L++ + F Sbjct: 786 FDQEFRKSFQWCQRHHSGFAVAMVDADHFKRINDNYGHEAGDICLQTLAELMRKHFRRET 845 Query: 171 -FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC- 228 + R GGEEF A E RK +E S ++ +H+TIS G+A Sbjct: 846 DRLSRFGGEEFVIFASYEDNSEIRNRLESFRKHVEKS-CSVCGEHDVHLTISIGLATGIP 904 Query: 229 -HKEPISTIIYRADQALYVAKKSGRNRV 255 + + + +ADQALY AK++GRNR+ Sbjct: 905 GPDDSPAEFLRQADQALYQAKQNGRNRL 932 >gi|209550978|ref|YP_002282895.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536734|gb|ACI56669.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 736 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 22/209 (10%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA------ 117 ++++ L LV + + L++G+ +G LK N + + D LSGL N Sbjct: 265 MVLQALGLVGLFFAVLLVIGWFAGRRLK---ADENSAREETLRDRLSGLSNRDGLGLAVD 321 Query: 118 -FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 F+ + +++ D+D FK++ND++GH GD++I ++ L V+ + R+G Sbjct: 322 RFVVEARQTKRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRGVAAGLDVLIPQGAVLARIG 381 Query: 177 GEEFAAAALGSSEQEAAI-LAND----LRKIIENSQINISSGPSIHITIS-AGIAERCHK 230 G+EFA A L E AA+ LA L + +E + + G SI I +S AG R Sbjct: 382 GDEFAIAFLSDGENAAALQLAEQILDFLVEPLEIGRRVVVVGASIGIAMSPAGTIGR--- 438 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ R+D A+Y AK++GR R+ + Sbjct: 439 ---EELVRRSDLAMYKAKEAGRARMTLYD 464 >gi|153000761|ref|YP_001366442.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS185] gi|151365379|gb|ABS08379.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS185] Length = 546 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 13/167 (7%) Query: 107 DCLSGLLNHSA-FISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNH+ +++ YN ++ I FD+D+FK++ND +GH GDKV+ + Sbjct: 384 DSLTGLLNHTQILVAARRCYNVARRINSQVCIAMFDLDHFKKVNDTYGHAGGDKVLLAFA 443 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L F GR GGEEF + A N +R+ + + + G +T Sbjct: 444 HLLQQSLRQTDFTGRYGGEEFMLVLPDMQKPLAIAKLNAIRESFSHI-VFVEDGIEFKVT 502 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 +S G+ ++ C E + AD+ LY AK+ GRN++V FS E + Sbjct: 503 LSGGLVFSDEC--EEFQDCLLLADKHLYEAKRLGRNQLV-FSPSEQD 546 >gi|158321179|ref|YP_001513686.1| diguanylate cyclase with GAF sensor [Alkaliphilus oremlandii OhILAs] gi|158141378|gb|ABW19690.1| diguanylate cyclase with GAF sensor [Alkaliphilus oremlandii OhILAs] Length = 517 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 19/163 (11%) Query: 104 SRIDCLSGLLNHSAF------ISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S+ D L+GLLN AF I + Y+E K SI+ DID FK ND +GH +GDKV+ Sbjct: 360 SKYDGLTGLLNRRAFESIYEEIYKIYRYSEDKFSILMIDIDNFKSTNDQYGHQMGDKVLK 419 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + + + R GGEE ++ +A +R IEN ++ I Sbjct: 420 NVAKCVCENVRSKDVIARYGGEEIIVILKDIGKERGKDIAERIRLSIENLSVD-----GI 474 Query: 217 HITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S GIA + +K+ +IY AD+ LY AK G+N+V Sbjct: 475 KVTVSIGIATFGVDSYNKD---NLIYLADKCLYEAKSIGKNQV 514 >gi|113971049|ref|YP_734842.1| diguanylate cyclase [Shewanella sp. MR-4] gi|114048274|ref|YP_738824.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113885733|gb|ABI39785.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113889716|gb|ABI43767.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 518 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + + L I DID+FK IND+FGH GDK Sbjct: 354 QKLNLLDSLTQLPNRAALEERMELEYRNYQRHKTPLWIAVADIDHFKSINDSFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF + A L N +R+ ++N + Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLILPDIGGGDIAQLLNRVREKVKNIPFKFKN- 472 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A+ E I RAD ALY AK R+RVV Sbjct: 473 QRITVTVSIGAAQVMGNELIHETFERADAALYKAKHESRDRVV 515 >gi|152968367|ref|YP_001364151.1| diguanylate cyclase with PAS/PAC sensor [Kineococcus radiotolerans SRS30216] gi|151362884|gb|ABS05887.1| diguanylate cyclase with PAS/PAC sensor [Kineococcus radiotolerans SRS30216] Length = 524 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 12/158 (7%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F+ L + LS+V D+D FK IND GH VGD V+ ++ Sbjct: 368 DPLTGLRNRRRFVDDLAQRLAATAAAGQPLSLVLLDVDRFKGINDTHGHAVGDDVLVGVA 427 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 Q + P V R GGEEF A A LR ++ + ++ IT Sbjct: 428 -QALSTHARPEDVVRYGGEEFVVLLPHLDADAARARAEVLRAACGQVRVEVE---AVRIT 483 Query: 220 ISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 +SAG+A H ++ AD+ALY AK+ GR++VV Sbjct: 484 VSAGVATSPDHGSTPDELLLAADRALYEAKEGGRDQVV 521 >gi|330896018|gb|EGH28241.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330936872|gb|EGH41013.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330975437|gb|EGH75503.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 334 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAIREQSQLSMLMIDVDYFKPYNDNFGHLEGD 224 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + I +I Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHI 284 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 + P +T+S G+A + + + +I AD+ LY AK +GRN+V Sbjct: 285 APVPGSSLTVSIGVATMTPQVGMQSRQLILDADKGLYQAKNNGRNQVAA 333 >gi|268679056|ref|YP_003303487.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268617087|gb|ACZ11452.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 392 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 18/172 (10%) Query: 113 LNHSAFISSLGS-YN-------EKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +N SAFI L + YN EKL I DIDYFK+IND +GH GDK++ + Sbjct: 217 INQSAFIDKLTNVYNRNYLQKYEKLINLNEYIIAALDIDYFKKINDTYGHDAGDKILTQI 276 Query: 159 SDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLR--KIIENSQINISSGPS 215 + L+ V R GGEEF A + AA A R I+ ++ IS S Sbjct: 277 AHILLQTIREGDSVIRYGGEEFLILAKVDKKSNYAASFAVIERVFHAIQTAEFFISDTKS 336 Query: 216 IHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 I +++S G+ H+ + +AD ALY AK SGRN + C+++ ++ + Sbjct: 337 ISVSVSIGVNLLAHQAQNFQEAFKQADIALYTAKNSGRNCIKCYTNADDTST 388 >gi|227821826|ref|YP_002825796.1| putative transmembrane sensory box GGDEF/EAL family protein [Sinorhizobium fredii NGR234] gi|227340825|gb|ACP25043.1| putative transmembrane sensory box GGDEF/EAL family protein [Sinorhizobium fredii NGR234] Length = 709 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 19/176 (10%) Query: 98 NRISQLSRI----DCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 +R+++ +R D LSGLLN + S + + LS+ D+D FK +ND +GH Sbjct: 283 HRLAETARFQANHDSLSGLLNRHGLLDFLERSEPTASSMLSLYLVDLDGFKAVNDAWGHA 342 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKIIENS 206 VGD +I ++ L + RLGG+EFA +G++ E E AILA ++E Sbjct: 343 VGDALIRLVAKALPACHPEIVAAARLGGDEFALVQVGTAPHGEIERAILA----LLVEPF 398 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +I+ +I + S G A R ++ RAD ALY AK++G+ + V + D+E Sbjct: 399 KIDDR---TIEVGASIGAAVRADSLASLELLRRADMALYRAKENGKGQAVQY-DLE 450 >gi|167897696|ref|ZP_02485098.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei 7894] Length = 688 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IN + GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINGSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A ++ + + + N G ++ +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARNVLERMRKGRWN--DGQALQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+ GR Sbjct: 406 AAKRGGR 412 >gi|158336630|ref|YP_001517804.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158306871|gb|ABW28488.1| diguanylate cyclase (GGDEF) domain protein [Acaryochloris marina MBIC11017] Length = 433 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 11/172 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ +D L+ L N F L LS++ D+DYFK ND +GHP GD Sbjct: 261 LERLAMVDELTQLANRRQFDQRLEQAWKVARRQQHPLSLILCDVDYFKNYNDTYGHPAGD 320 Query: 153 KVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ L P F R GGEEFA S +A + ++ I QI + Sbjct: 321 ECLRSIAKVLDRSIRRPGEFSARYGGEEFAIVLPNVSRMDAIQIVTTIQTAIHQLQIPHR 380 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 SS +T+S GIA S +I AD+ALY AK GR+R V + + Sbjct: 381 SSLNHASVTLSLGIATMIPNANYSPEQLIQAADEALYQAKHQGRDRYVVWDN 432 >gi|149378320|ref|ZP_01896028.1| hypothetical protein MDG893_17212 [Marinobacter algicola DG893] gi|149357402|gb|EDM45916.1| hypothetical protein MDG893_17212 [Marinobacter algicola DG893] Length = 331 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 37/179 (20%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ L+ ID L+G+ N + ++S ++V DIDYFK+IND +GH V Sbjct: 160 ERLEHLATIDPLTGVKNRRSMDQELAMAVASASRTGISYALVLLDIDYFKKINDEYGHNV 219 Query: 151 GDKVIAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 GD V+ + SDQL R GGEEF G + + LR Sbjct: 220 GDDVLVDMVALIEQNIRKSDQLF----------RFGGEEFVLLMPG-------VDSTGLR 262 Query: 201 KIIENSQINISS---GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ N Q + P +T S G+A E + RAD+ALY AK +GR+R+V Sbjct: 263 AVMHNLQHIMHKFLRHPGGQVTASFGVALLQAGEKPDDWLARADEALYEAKDTGRDRIV 321 >gi|194365079|ref|YP_002027689.1| two component regulator propeller domain-containing protein [Stenotrophomonas maltophilia R551-3] gi|194347883|gb|ACF51006.1| two component regulator propeller domain protein [Stenotrophomonas maltophilia R551-3] Length = 1008 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N AF +L L +V DID+FK +ND H +GD V+ Sbjct: 847 AREDALTGLANRRAFDETLARDFARSQRSGHPLCLVVLDIDHFKDVNDRHSHSIGDAVLV 906 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + R GGEEFA + +EAA L LR + + + + + Sbjct: 907 QVATVIAAACRDSDLPARTGGEEFALLLNDTRLEEAAQLCARLRGLFHDHP-DWAGVDGL 965 Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNR 254 +T SAG+ E + ++Y RAD+ALY AK GR+R Sbjct: 966 RVTFSAGLVELDADDRTPALLYQRADRALYRAKSDGRDR 1004 >gi|28875454|gb|AAO59943.1| putative sensor kinase [uncultured bacterium] Length = 237 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%) Query: 107 DCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +L + +N+ +S + DID+FK +ND FGH GD VI ++ Sbjct: 73 DPLTGLRNRHHLEDTLRTQMGQAIHNQTPISCLMMDIDHFKDVNDRFGHEAGDGVIKGVA 132 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + R GGEEF G E+EA +A D+ + + + HI Sbjct: 133 AIIQRAIRDSGMAFRYGGEEFLVLLSGMGEEEANRMATDIYNGVHALTLRFGTSDISHID 192 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S G+A ++ AD ALY AK+ GR+R+V F Sbjct: 193 VSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSFG 232 >gi|325926525|ref|ZP_08187842.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] gi|325543097|gb|EGD14543.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] Length = 801 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 9/165 (5%) Query: 104 SRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D ++GL+N I S ++ F D+D+FK +ND FGH VGDK + Sbjct: 370 ARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDKFLC 429 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +D + + + ++GRLGG+EFA + +A + + ++ + G + Sbjct: 430 HFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQAVLERMHGVLGQPWSH-QGGRPL 488 Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + S G+ E H ++T++ AD A + AK+ GRNRV CF++ Sbjct: 489 TPSCSFGVVEIRHGVSDLTTLMTAADLACHAAKEEGRNRVRCFNE 533 >gi|258445792|ref|ZP_05693969.1| GGDEF domain-containing protein [Staphylococcus aureus A6300] gi|257855368|gb|EEV78306.1| GGDEF domain-containing protein [Staphylococcus aureus A6300] Length = 356 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 NR + D L+GL N F L + K ++++ DID FK +ND + H Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 241 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + R GGEEF+ S ++ LA ++R +E S ++ Sbjct: 242 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 301 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 + I +++S G+ +P S + AD ++VAK GRN+V+ Sbjct: 302 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 349 >gi|251810180|ref|ZP_04824653.1| ABC superfamily ATP binding cassette transporter, binding protein [Staphylococcus epidermidis BCM-HMP0060] gi|293368208|ref|ZP_06614837.1| ABC superfamily ATP binding cassette transporter, binding protein [Staphylococcus epidermidis M23864:W2(grey)] gi|251806232|gb|EES58889.1| ABC superfamily ATP binding cassette transporter, binding protein [Staphylococcus epidermidis BCM-HMP0060] gi|291317631|gb|EFE58048.1| ABC superfamily ATP binding cassette transporter, binding protein [Staphylococcus epidermidis M23864:W2(grey)] Length = 365 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 14/205 (6%) Query: 63 YILVENLSLVIIS--ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 Y LVE L L+ IS ITI+ + ++ + F NR + D L+GL N F Sbjct: 157 YELVEILVLIPISFIITIASAITFVD---IWHFFSLVNRYENEDKYDYLTGLGNVKEFDR 213 Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L + K L+++ DID FK +ND++ H GD V+ +S L + Sbjct: 214 HLNEVSSKAEEKKQSLALLLIDIDGFKDVNDHYSHQSGDAVLKQMSQLLKNYVPNQFKIF 273 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF+ + ++ LA ++R +E S ++ + I +++S G+ ++ Sbjct: 274 RNGGEEFSVVIRDYTLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTQEDRK 333 Query: 234 S--TIIYRADQALYVAKKSGRNRVV 256 S + AD ++VAK GRN+V+ Sbjct: 334 SQRKVFKDADDMVHVAKSEGRNKVM 358 >gi|78048529|ref|YP_364704.1| putative signal transduction protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036959|emb|CAJ24659.1| putative signal transduction protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 801 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 9/165 (5%) Query: 104 SRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D ++GL+N I S ++ F D+D+FK +ND FGH VGDK + Sbjct: 370 ARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDKFLC 429 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +D + + + ++GRLGG+EFA + +A + + ++ + G + Sbjct: 430 HFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQAVLERMHGVLGQPWSH-QGGRPL 488 Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + S G+ E H ++T++ AD A + AK+ GRNRV CF++ Sbjct: 489 TPSCSFGVVEIRHGVSDLTTLMTAADLACHAAKEEGRNRVRCFNE 533 >gi|77362379|ref|YP_341953.1| hypothetical protein PSHAb0470 [Pseudoalteromonas haloplanktis TAC125] gi|76877290|emb|CAI89507.1| conserved protein of unknown function ; putative GGDEF domain protein [Pseudoalteromonas haloplanktis TAC125] Length = 511 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 14/160 (8%) Query: 106 IDCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNFGHPVGDKVI 155 +D L+ L N +AF YN ++ ++V D+DYFK IND FGH GD + Sbjct: 352 LDSLTKLPNRAAFDER---YNHEMHLFNVQASDVTLVVIDVDYFKSINDRFGHTAGDITL 408 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L F+ R GGEEF G+S + A L+K I+ Sbjct: 409 QVIAKALQKSIEKTDFIARYGGEEFVLLMPGTSLEHAIPQLEKLKKNIKKIPFKFKD-KQ 467 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I IT+S G + + + RAD ALY AK +GR+R+ Sbjct: 468 IEITVSLGATQFKQGDTLLKAFDRADDALYEAKNAGRDRL 507 >gi|332308008|ref|YP_004435859.1| response regulator receiver modulated diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175337|gb|AEE24591.1| response regulator receiver modulated diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 357 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 11/169 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPV 150 + + +++ D L+ + N F L N+ L ++ FDID+FK ND +GH Sbjct: 188 DELRKMAYQDGLTQVSNRRYFNEYLARQNKLKQRSGLPLGLMMFDIDFFKSFNDLYGHLA 247 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIENSQI 208 GD + ++ L P FV R GGEEF A L ++ E IL A ++ +E +I Sbjct: 248 GDDCLRLVAKALSASVVRPGDFVARFGGEEF-AIVLPDTDIEGVILVAQKVQAQVEALEI 306 Query: 209 NISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 N P ++ S GIA K P +I RAD+ LY AK +GRN+ V Sbjct: 307 NHEGSPLGRVSGSIGIAVSDGKAPEQGKLIERADKHLYQAKATGRNKFV 355 >gi|282916088|ref|ZP_06323851.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus D139] gi|283769909|ref|ZP_06342801.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus H19] gi|282320036|gb|EFB50383.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus D139] gi|283460056|gb|EFC07146.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus H19] Length = 356 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 NR + D L+GL N F L + K ++++ DID FK +ND + H Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 241 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + R GGEEF+ S ++ LA ++R +E S ++ Sbjct: 242 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 301 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 + I +++S G+ +P S + AD ++VAK GRN+V+ Sbjct: 302 PNKEVIKLSVSIGVGYLTDNDPKSQRKVFKDADDMVHVAKNQGRNKVM 349 >gi|254711121|ref|ZP_05172932.1| response regulator PleD [Brucella pinnipedialis B2/94] gi|256029502|ref|ZP_05443116.1| response regulator PleD [Brucella pinnipedialis M292/94/1] gi|261318712|ref|ZP_05957909.1| response regulator receiver modulated diguanylate cyclase [Brucella pinnipedialis B2/94] gi|265986510|ref|ZP_06099067.1| response regulator receiver modulated diguanylate cyclase [Brucella pinnipedialis M292/94/1] gi|261297935|gb|EEY01432.1| response regulator receiver modulated diguanylate cyclase [Brucella pinnipedialis B2/94] gi|264658707|gb|EEZ28968.1| response regulator receiver modulated diguanylate cyclase [Brucella pinnipedialis M292/94/1] Length = 462 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S R S D L+GL N ++ + LSI+ D+D+FKQ+N+ +GH Sbjct: 289 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 348 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ S +L + R GGEEF + Q A +A +R I+ + Sbjct: 349 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 408 Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G +T+S G+A R + + + RA AL AK+SGRNR+V Sbjct: 409 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 458 >gi|218709674|ref|YP_002417295.1| hypothetical protein VS_1685 [Vibrio splendidus LGP32] gi|218322693|emb|CAV18869.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrio splendidus LGP32] Length = 356 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 8/165 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 Y+ ++ L CL LN A + L K ++ DID+FKQ+ND +GH +GD V+ Sbjct: 184 YDPLTHLPNRRCLFKTLN--AEVEQLKGSLGKGTLAVVDIDFFKQVNDTYGHQMGDVVLK 241 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILANDLRKIIENSQ-INIS 211 +++ L FV R GGEEF S+ E + L +++KI +S+ I IS Sbjct: 242 KVANVLRNNIQDGEFVARFGGEEFILWYPNSTPSCVEDKFMTLLQEMKKITLDSKPITIS 301 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + H +S G ++ + ++I AD+ LY+AK++GR++ + Sbjct: 302 IG-ACHFELSTGDSKGERMSALDSLIKVADECLYIAKQNGRDQFI 345 >gi|124515987|gb|EAY57496.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptospirillum rubarum] Length = 878 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 15/184 (8%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LS 130 + LLL ++ + +E +I +L+ ID L+GLLN +A I L + EK ++ Sbjct: 429 VVLLLKDVTAKMERE-----RQIWRLANIDDLTGLLNRTALIERLANEMEKSRRNRGAMA 483 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + F D D FK IND GH GD + + +L V RLGG+EF S++ Sbjct: 484 LFFLDFDDFKGINDTLGHSAGDFFLKVIGHRLSGSVRPTDIVARLGGDEFVIVVALESDE 543 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKK 249 A + I+ + ++I + ++ ++S GIA E + ++ +AD A+Y AK Sbjct: 544 SILAFAQKILDIL-GAPVSIQA-QTVQTSVSVGIATFPRDAESVEDLLRKADIAMYQAKN 601 Query: 250 SGRN 253 G+N Sbjct: 602 KGKN 605 >gi|158520752|ref|YP_001528622.1| diguanylate cyclase with GAF sensor [Desulfococcus oleovorans Hxd3] gi|158509578|gb|ABW66545.1| diguanylate cyclase with GAF sensor [Desulfococcus oleovorans Hxd3] Length = 347 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 26/206 (12%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 G++ L+E L+ +SL L ++ ++ ++ L+ D L+GLLN Sbjct: 153 GMDTSLLEQLA-----TKVSLCLSNVA---------AHEKLKFLAYHDPLTGLLNRRVME 198 Query: 120 SSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 ++L G YN LS+VF D+DYFK++ND GH GD ++ L+DQLV V Sbjct: 199 TALARETARAGRYNLPLSVVFLDLDYFKKVNDTHGHETGDALLKHLADQLVHQCRGTDIV 258 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---- 228 R G+EF + A L + +++ + S + P I + I+ G+A Sbjct: 259 ARFAGDEFVIILPETDADHATALMHRIQEHLAASPLVCGETP-IPVVITFGVASTMDPDP 317 Query: 229 HKEPISTIIYRADQALYVAKKSGRNR 254 K+ + ++ +AD+ LY K + +N+ Sbjct: 318 PKDDPAALLKKADERLYEKKAARQNK 343 >gi|70728811|ref|YP_258560.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68343110|gb|AAY90716.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5] Length = 495 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 9/190 (4%) Query: 74 ISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAF-ISSLGSYNE---- 127 +++ I L++ I +L + Y R I + +D L+ L N F + + + E Sbjct: 297 LNLLICLVITAIVLVLLSAVVRRYQRKIEAQATLDSLTRLPNRRGFDLLAAQALQEAWRD 356 Query: 128 --KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 L V D+D+FK++ND +GH GD+V++ + L V R GGEEF Sbjct: 357 LTPLCAVLLDLDHFKRLNDTYGHLAGDQVLSGFARDLQGCLRQSDIVCRWGGEEFIVLLK 416 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 + A +A +R + E + + P + +T+S G+ ++ + +++ RAD A+Y Sbjct: 417 DTDSSVALGIAEKIRLLTEQQRYHYEGQP-LQLTVSIGLTSLQAQDTLHSLLSRADHAMY 475 Query: 246 VAKKSGRNRV 255 AK +GRNR Sbjct: 476 RAKHTGRNRT 485 >gi|27467446|ref|NP_764083.1| hypothetical protein SE0528 [Staphylococcus epidermidis ATCC 12228] gi|81843994|sp|Q8CTF5|Y528_STAES RecName: Full=Uncharacterized membrane protein SE_0528 gi|147742898|sp|Q5HQY3|Y413_STAEQ RecName: Full=Uncharacterized membrane protein SERP0413 gi|27314989|gb|AAO04125.1|AE016745_224 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] Length = 356 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 14/205 (6%) Query: 63 YILVENLSLVIIS--ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 Y LVE L L+ IS ITI+ + ++ + F NR + D L+GL N F Sbjct: 148 YELVEILVLIPISFIITIASAITFVD---IWHFFSLVNRYENEDKYDYLTGLGNVKEFDR 204 Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L + K L+++ DID FK +ND++ H GD V+ +S L + Sbjct: 205 HLNEVSSKAEEKKQSLALLLIDIDGFKDVNDHYSHQSGDAVLKQMSQLLKNYVPNQFKIF 264 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF+ + ++ LA ++R +E S ++ + I +++S G+ ++ Sbjct: 265 RNGGEEFSVVIRDYTLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTQEDRK 324 Query: 234 S--TIIYRADQALYVAKKSGRNRVV 256 S + AD ++VAK GRN+V+ Sbjct: 325 SQRKVFKDADDMVHVAKSEGRNKVM 349 >gi|62317533|ref|YP_223386.1| response regulator PleD [Brucella abortus bv. 1 str. 9-941] gi|83269514|ref|YP_418805.1| response regulator PleD [Brucella melitensis biovar Abortus 2308] gi|148558083|ref|YP_001257597.1| response regulator PleD [Brucella ovis ATCC 25840] gi|189022788|ref|YP_001932529.1| response regulator PleD [Brucella abortus S19] gi|237817081|ref|ZP_04596073.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella abortus str. 2308 A] gi|254691030|ref|ZP_05154284.1| response regulator PleD [Brucella abortus bv. 6 str. 870] gi|254695663|ref|ZP_05157491.1| response regulator PleD [Brucella abortus bv. 3 str. Tulya] gi|254698814|ref|ZP_05160642.1| response regulator PleD [Brucella abortus bv. 2 str. 86/8/59] gi|254732261|ref|ZP_05190839.1| response regulator PleD [Brucella abortus bv. 4 str. 292] gi|256111466|ref|ZP_05452486.1| response regulator PleD [Brucella melitensis bv. 3 str. Ether] gi|256256215|ref|ZP_05461751.1| response regulator PleD [Brucella abortus bv. 9 str. C68] gi|260544769|ref|ZP_05820590.1| GGDEF:Response regulator receiver [Brucella abortus NCTC 8038] gi|260756626|ref|ZP_05868974.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 6 str. 870] gi|260760056|ref|ZP_05872404.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 4 str. 292] gi|260763295|ref|ZP_05875627.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 2 str. 86/8/59] gi|260882443|ref|ZP_05894057.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 9 str. C68] gi|261216063|ref|ZP_05930344.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 3 str. Tulya] gi|265992970|ref|ZP_06105527.1| response regulator receiver modulated diguanylate cyclase [Brucella melitensis bv. 3 str. Ether] gi|297249572|ref|ZP_06933273.1| two-component system protein [Brucella abortus bv. 5 str. B3196] gi|62197726|gb|AAX76025.1| response regulator/GGDEF domain protein [Brucella abortus bv. 1 str. 9-941] gi|82939788|emb|CAJ12796.1| GGDEF:Response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148369368|gb|ABQ62240.1| response regulator/GGDEF domain protein [Brucella ovis ATCC 25840] gi|189021362|gb|ACD74083.1| GGDEF:Response regulator receiver [Brucella abortus S19] gi|237787894|gb|EEP62110.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella abortus str. 2308 A] gi|260098040|gb|EEW81914.1| GGDEF:Response regulator receiver [Brucella abortus NCTC 8038] gi|260670374|gb|EEX57314.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 4 str. 292] gi|260673716|gb|EEX60537.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 2 str. 86/8/59] gi|260676734|gb|EEX63555.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 6 str. 870] gi|260871971|gb|EEX79040.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 9 str. C68] gi|260917670|gb|EEX84531.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 3 str. Tulya] gi|262763840|gb|EEZ09872.1| response regulator receiver modulated diguanylate cyclase [Brucella melitensis bv. 3 str. Ether] gi|297173441|gb|EFH32805.1| two-component system protein [Brucella abortus bv. 5 str. B3196] Length = 456 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S R S D L+GL N ++ + LSI+ D+D+FKQ+N+ +GH Sbjct: 283 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 342 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ S +L + R GGEEF + Q A +A +R I+ + Sbjct: 343 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 402 Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G +T+S G+A R + + + RA AL AK+SGRNR+V Sbjct: 403 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 452 >gi|330962247|gb|EGH62507.1| GGDEF domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 406 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 92/206 (44%), Gaps = 39/206 (18%) Query: 87 GSILKELFISYNRISQ-----LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFF 134 GS L LF R+ Q ++R D L+ L N ++F ++I+ Sbjct: 212 GSRLSYLFALRGRLLQAQLVEMARTDALTQLFNRRYQDEVITSFWQRARETPTNVAIILM 271 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 DID+FK ND++GHP GD + LSD Q G F R GGEE + Q Sbjct: 272 DIDHFKSYNDSYGHPQGDTCLKLLSDVIRQQAGECGAMAF--RFGGEEILILMNADARQA 329 Query: 192 AAILANDLRKIIENSQINISS--------GPSIHITISAGIAERCHKEPIS---TIIYRA 240 RK+ E Q ++++ G +TIS G+A C P + ++I A Sbjct: 330 --------RKMAEALQASVAALKLPHPVLGEGALVTISLGVA--CAIAPKTSPESLISAA 379 Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266 D ALY AK++GRN CF+ + C Sbjct: 380 DNALYAAKRAGRN-CACFARNDAFEC 404 >gi|256157697|ref|ZP_05455615.1| response regulator PleD [Brucella ceti M490/95/1] gi|256253331|ref|ZP_05458867.1| response regulator PleD [Brucella ceti B1/94] gi|261220447|ref|ZP_05934728.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti B1/94] gi|265996202|ref|ZP_06108759.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti M490/95/1] gi|260919031|gb|EEX85684.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti B1/94] gi|262550499|gb|EEZ06660.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti M490/95/1] Length = 462 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 9/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S R S D L+GL N ++ + LSI+ D+D+FKQ+N+ +GH Sbjct: 289 SMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 348 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ S +L + R GGEEF + Q A +A +R I+ + Sbjct: 349 GAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 408 Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G +T+S G+A R + + + RA AL AK+SGRNR+V Sbjct: 409 VLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 458 >gi|254820134|ref|ZP_05225135.1| cyclic diguanylate phosphodiesterase domain-containing protein [Mycobacterium intracellulare ATCC 13950] Length = 1288 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 21/187 (11%) Query: 82 LGYISGSILKELFI----SYNRISQLSR---IDCLSGLLNHSAFISSLGSYNEK------ 128 LG + ++L F+ + N +S+++R D L+GL N + F+ L + Sbjct: 284 LGILVAAVLARQFVVLVDNQNLLSEVAREAFRDNLTGLANRALFLQRLEQAVARRHPNGM 343 Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AA 184 ++++ D+D FK +ND GHP GD+++ ++ +L G + RLGG+EFAA A+ Sbjct: 344 PIAVLCLDLDNFKSVNDALGHPAGDELLVRVAGRLTAALGESGTIARLGGDEFAAVIEAS 403 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + S+ A + + I I I PSI T+ G A C + ++ AD A+ Sbjct: 404 VQESQAAAHRILDAFTGAILIDGIPIMVRPSIGFTVCTG-ASAC---TVDQLLRHADLAM 459 Query: 245 YVAKKSG 251 Y AK+ G Sbjct: 460 YAAKREG 466 >gi|229171410|ref|ZP_04298995.1| Sensory box/GGDEF [Bacillus cereus MM3] gi|228612114|gb|EEK69351.1| Sensory box/GGDEF [Bacillus cereus MM3] Length = 569 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNEMIAGKKEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF + E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ A + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCAYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|170700998|ref|ZP_02891979.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] gi|170134095|gb|EDT02442.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] Length = 520 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 17/208 (8%) Query: 68 NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 + ++ I S L LG++ S+L ++ + + L+R D L+GL N +L Sbjct: 303 DRAIPIGSAMAVLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174 + LS++F D+D+FK+ ND+ GH GD +A ++ + P + R Sbjct: 363 AREWRRAARSQHALSLLFVDVDHFKRYNDSQGHQAGDDALAAVARCIAGCLRRPADYAAR 422 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--- 231 GGEEF A +A +R I + I +G +T S G+ C+ E Sbjct: 423 YGGEEFVVVLPNVDTNGAVTIAESIRTGILDLGIRHDTGVCGRLTASIGVTT-CYPERDD 481 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259 I + AD ALY AK+ GRN+VV + Sbjct: 482 SIQAALKLADDALYRAKECGRNQVVVLT 509 >gi|110801973|ref|YP_698358.1| GGDEF domain-containing protein [Clostridium perfringens SM101] gi|110682474|gb|ABG85844.1| GGDEF domain protein [Clostridium perfringens SM101] Length = 544 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%) Query: 99 RISQLSRI-DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R S+L + D L + N ++I++L + +S + D+DYFK NDN+GH GD V Sbjct: 371 RDSKLDSLKDGLCNIYNRRFLDSYINNLKEKDLPISFLMIDVDYFKLYNDNYGHQAGDFV 430 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 + +S L V R GGEEF G+S+ + A +++ ++N I S Sbjct: 431 LKSISSVLKRNSRKEDIVSRYGGEEFCVLLKGASKHSSINYAKRIKENLDNLNIKHKYSK 490 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S ++T S GI K + I +D+ALY++K GRN D Sbjct: 491 ISNNVTFSIGIYTTYTKNDLKNAIKLSDKALYISKTRGRNTYTYLED 537 >gi|148263943|ref|YP_001230649.1| diguanylate cyclase [Geobacter uraniireducens Rf4] gi|146397443|gb|ABQ26076.1| response regulator receiver modulated diguanylate cyclase [Geobacter uraniireducens Rf4] Length = 462 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 12/178 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 S+ E + YN L ID L+GL N+ I Y +S++F DID FK Sbjct: 279 SLALENAVRYNNAKNLLYIDELTGLFNYRYLDVALEREIRRAERYGSHISVIFLDIDLFK 338 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ++ND +GH VG + + + L V R GG+E+ + + AA +A +R Sbjct: 339 RVNDMYGHLVGSRALNEVGILLKKSVRDVDTVIRYGGDEYTIILIETGIDGAAAVAERIR 398 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255 + IE + G ++ +T S G A C+ E T ++ ADQA+Y K G+NRV Sbjct: 399 RSIEAHGFMAADGLNLKLTASLGYA--CYPEDAKTKTELLELADQAMYRGKADGKNRV 454 >gi|330950876|gb|EGH51136.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7] Length = 748 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 15/151 (9%) Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 +AF++ Y E+ +++F D+D FK +ND+ GH GDK++ ++++L + + R+ Sbjct: 337 TAFVTRDSRY-ERATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARI 395 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGPSIHITISAGI--AERC 228 GG+EFA +G + E A+ K+ E SQ++ + G I I+ S GI A Sbjct: 396 GGDEFAILLMGKDQPETAV------KMAERIVSQLHTAIQIEGQDIFISCSIGIVTAGES 449 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 H +P ++ AD A+Y AKK GR R F+ Sbjct: 450 HTKP-EELLRDADVAMYSAKKQGRGRWNIFN 479 >gi|329926642|ref|ZP_08281055.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] gi|328939183|gb|EGG35546.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] Length = 529 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 6/179 (3%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDY 138 L +I G+ + + + Q + D L+GL N L S++ E +++ DID+ Sbjct: 349 LNWIMGAAAETMAKQTQSLQQEAITDPLTGLSNRRELERCLESWDALGEPYAVILLDIDH 408 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK IND +GH GD+++ ++ +V R GGEEF S A +A Sbjct: 409 FKAINDTYGHQTGDQILKLVAAVMVDCAPADAVCSRFGGEEFVILLRERSLDTAYRMAER 468 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +R+ I S S ++ I +S ++E + AD ALY AK GRNR V Sbjct: 469 IRRAILVSPTPYSGTLTVSIGVSLYPEHGGNRE---DVFQAADMALYRAKGEGRNRTVA 524 >gi|330466192|ref|YP_004403935.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris AB-18-032] gi|328809163|gb|AEB43335.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris AB-18-032] Length = 792 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 27/198 (13%) Query: 89 ILKELFISYN--RIS----QLSRIDCLSGLLNHSAFISSL-------------GSYNEKL 129 +L LF Y R++ QL+ +D L+GL N A ++ + G + L Sbjct: 223 VLVPLFAVYRMARLTVEQRQLAALDPLTGLPNRKALLAEVNEQVHRHAERAARGEPDAHL 282 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ D+D FK +ND GH VGD+++ +S +L V P V RLGG+EFA G +E Sbjct: 283 ALLLIDLDRFKNVNDALGHAVGDRLLVEVSARLTGVVEPPDLVARLGGDEFAIVMTGLTE 342 Query: 190 --QEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYV 246 Q A +R + E ++ G + + S GIA H E +T++ AD A+Y Sbjct: 343 VGQARAFADQVVRVLAEPVPLD---GLPLDVGGSIGIALYPDHGEDFATLMRHADVAMYD 399 Query: 247 AKKSGRNRVVCFSDIENN 264 AK RN V E++ Sbjct: 400 AKH--RNDTVAVYTAESD 415 >gi|258423395|ref|ZP_05686286.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus aureus A9635] gi|257846456|gb|EEV70479.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus aureus A9635] Length = 356 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 NR + D L+GL N F L + K ++++ DID FK +ND + H Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 241 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + R GGEEF+ S ++ LA ++R +E S ++ Sbjct: 242 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 301 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 + I +++S G+ +P S + AD ++VAK GRN+V+ Sbjct: 302 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 349 >gi|229101383|ref|ZP_04232127.1| Sensory box/GGDEF [Bacillus cereus Rock3-28] gi|228682088|gb|EEL36221.1| Sensory box/GGDEF [Bacillus cereus Rock3-28] Length = 569 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ I++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIAGKKEFGIIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNEHTQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|153833487|ref|ZP_01986154.1| diguanylate cyclase (GGDEF) domain [Vibrio harveyi HY01] gi|148870262|gb|EDL69197.1| diguanylate cyclase (GGDEF) domain [Vibrio harveyi HY01] Length = 573 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 15/163 (9%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +L D ++ L N + + + ++E I DID FK IND FGHPVGD VI Sbjct: 412 DRLRHQDPMTQLENKACLAAKVSRELHSENRFIAMVDIDNFKYINDKFGHPVGDLVIQKT 471 Query: 159 SDQLVVVFGTP--MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + F P + + R GGEEFA + E +A ++ ++ S + + G + Sbjct: 472 AEVMRDCFPKPKGICLARYGGEEFAIVFQANDEFDAKHQLDNFLTALQRSHLTLGCG-DV 530 Query: 217 HITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRV 255 T S G P+ T ++ +AD+ALY AK+ G+NRV Sbjct: 531 RFTASVGFT------PLETSYHHVVEQADKALYQAKRLGKNRV 567 >gi|313650578|gb|EFS14981.1| uncharacterized ydaM domain protein [Shigella flexneri 2a str. 2457T] Length = 221 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPV 150 ++ + D ++GLLN F I+ G + S++ D D FK IND +GH Sbjct: 58 EQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSK 117 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ L+ L V R GGEEF + A LA +R + ++++I Sbjct: 118 GDEVLCALARPLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSI 175 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S P T+S G+A E I + R D ALY AK GRNRV+ Sbjct: 176 SGLPRF--TVSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 220 >gi|255320380|ref|ZP_05361564.1| ggdef domain protein [Acinetobacter radioresistens SK82] gi|255302575|gb|EET81808.1| ggdef domain protein [Acinetobacter radioresistens SK82] Length = 423 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 10/172 (5%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNF 146 +I + + LS+ D L+ + N F +L S+ + LS++F D+D+FK ND + Sbjct: 241 YIHASELLHLSQHDELTQISNRRNFDETLDSFYRQSRKEGTPLSLLFIDVDFFKNYNDFY 300 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH +GDKVI ++ + FV R GGEEF + A +A+++ + IE Sbjct: 301 GHQMGDKVIYSIARAIKNSIRHRDFVARYGGEEFVVLLPETEAHGAYAVASNIYREIERL 360 Query: 207 QI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 I + S + +IT+S GI + ++ ++ ADQALY AK+ GRN++ Sbjct: 361 AIPHERSCIASYITVSLGITIYRGEAAVTQEALLESADQALYRAKQLGRNQI 412 >gi|226313740|ref|YP_002773634.1| hypothetical protein BBR47_41530 [Brevibacillus brevis NBRC 100599] gi|226096688|dbj|BAH45130.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 746 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 14/167 (8%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDK 153 +N + ++ D L+GL + EK S++ DIDYFK +ND FGH VGD+ Sbjct: 585 HNEMERMVITDNLTGLYTRRHLNERVRGSLEKDNYGSLILIDIDYFKTVNDTFGHQVGDE 644 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ +S+ + R GGEE A + A +A +R+ +E Sbjct: 645 VLIQVSNLIRHSIRDSDIAARWGGEELAVYLPRVDKNTAHSVAERIRECVEQET------ 698 Query: 214 PSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVV 256 S +TIS G+A+ + ++ + ++AD ALY AK SGRN+VV Sbjct: 699 -SPQVTISCGLAKWSREMDVNLSVEALFHQADIALYEAKNSGRNQVV 744 >gi|254456940|ref|ZP_05070368.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207085732|gb|EDZ63016.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 591 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 113/253 (44%), Gaps = 31/253 (12%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT------------ISLLLGYIS 86 + + IF + L+ + T + Y + L+LV+ +T S + YI+ Sbjct: 338 VDSSIFKNSCELYKLEATEYICTPYTISNELTLVLTIVTRDEKTTEYVRSITSDIEDYIT 397 Query: 87 GS----ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFF 134 + I K+L + N+ ++R+D L+ + N F+ + ++ Sbjct: 398 TARPAIISKKLMQTLNK---MARVDQLTDMYNRK-FLDEFADVSIPQAVRAGTSYGVLMV 453 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DIDYFK INDN+GH VGD+ I +S + R GGEEF Sbjct: 454 DIDYFKMINDNYGHDVGDEAIRIISGVIKKSIRKADIAIRYGGEEFLVLLYNCEANNIVQ 513 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 +AN +R +I ++G S T+S G + E I I AD +LY AK+ GRN Sbjct: 514 IANSIRTEFSKQKI-YANGESFSKTLSVGCSSFPKDSESIWKCIKFADISLYQAKEGGRN 572 Query: 254 RVVCFS-DIENNT 265 +VV F+ D+ NNT Sbjct: 573 QVVAFNEDMLNNT 585 >gi|99081010|ref|YP_613164.1| diguanylate cyclase with GAF sensor [Ruegeria sp. TM1040] gi|99037290|gb|ABF63902.1| diguanylate cyclase with GAF sensor [Ruegeria sp. TM1040] Length = 596 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 74/161 (45%), Gaps = 5/161 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGD 152 R+SQL D L+GLLN + + G + + + + DID+FK+IND FGH GD Sbjct: 424 TRLSQLVEHDPLTGLLNRRSLDVAFGDFVQNPPTLPTACLMIDIDHFKRINDEFGHEAGD 483 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ + L V G R GGEEF A +A +R I Sbjct: 484 TVMQSFAGLLREVVGDSGSCYRFGGEEFVVILPDHDVDAAHEIAEGIRTRTAKMAIAHRG 543 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +TIS G+A + T++ RAD AL AK +GRN Sbjct: 544 QSLGKVTISIGLAVAASAGTLDTLLSRADSALLQAKVTGRN 584 >gi|296284755|ref|ZP_06862753.1| hypothetical protein CbatJ_14093 [Citromicrobium bathyomarinum JL354] Length = 560 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 18/180 (10%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 + + LS+ID L+G LN ++++G V D+D FK+IND GH Sbjct: 89 AEEQARHLSQIDPLTGCLNRRCATEKMMNALAAIGDTQYAAGFVMIDLDGFKEINDTNGH 148 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENS 206 GD+V+ +S +L + RLGG+EFA + + A ++ I Sbjct: 149 QAGDEVLLEVSRRLKSMTPPGGDCARLGGDEFAFIMPLVKDDPDSLELWACEMTGNIARP 208 Query: 207 QINISSGPSIHITISAGIAERCHKEPIST-------IIYRADQALYVAKKSGRNRVVCFS 259 I+ G S+ +TIS GIA +EPI ++ RAD A+Y AKK GRNR F Sbjct: 209 -IDTEVG-SLEVTISVGIAVHRPEEPIENLETAARKLMRRADLAMYQAKKEGRNRFCWFD 266 >gi|160900354|ref|YP_001565936.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1] gi|160365938|gb|ABX37551.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Delftia acidovorans SPH-1] Length = 617 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 16/170 (9%) Query: 95 ISYNRISQLSRIDCLSGLLNH------SAFISSLGSYNE-KLSIVFFDIDYFKQINDNFG 147 + RI ++ D L+GL N SA L N+ L+++F D+D+FK +ND+ G Sbjct: 183 LDQERIYWMAHYDALTGLPNRTLLAERSARAIELAKANDTPLAVMFLDLDHFKHVNDSLG 242 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS- 206 H VGD ++ ++ +L V V R+GG+EF G++ Q AA +A L++ + Sbjct: 243 HRVGDALLVEIARRLRAVVRDRDTVARIGGDEFVLLLPGANAQGAARVAGKLQEASRQAY 302 Query: 207 QIN---ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 QI+ ++ PSI I + H I ++ AD A+Y AK++GRN Sbjct: 303 QIDRHELTIAPSIGIAL---YPRDGHD--IDSLTQAADAAMYHAKQAGRN 347 >gi|293414303|ref|ZP_06656952.1| inner membrane protein ycdT [Escherichia coli B185] gi|291434361|gb|EFF07334.1| inner membrane protein ycdT [Escherichia coli B185] Length = 476 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHP+GD+VI + + Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMLMDIDHFKKVNDTWGHPIGDQVIKTVVNI 368 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 369 IGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 428 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 429 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 465 >gi|270290006|ref|ZP_06196232.1| signal transduction diguanylate cyclase [Pediococcus acidilactici 7_4] gi|270281543|gb|EFA27375.1| signal transduction diguanylate cyclase [Pediococcus acidilactici 7_4] Length = 396 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 13/214 (6%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118 G+ + V + L+ + + + + ++ + Y ++ + + D L+G+ N F Sbjct: 180 GIRTMTVSQVLLLTFEFMMMMTIVHFGNIEIRAMVKRYMKLEKDNGYDFLTGVRNRRTFN 239 Query: 119 -----ISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL----SDQLVVVFGT 168 + + S N+ +++V FDID+FK ND +GH VGD V+ ++ SD+L T Sbjct: 240 EVVNEVFEVYSNNDLPVAMVMFDIDHFKLFNDQYGHQVGDNVLKYVAQLFSDELFER-KT 298 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 + R+GGEEF + EAA + +R I+ + ++ +T+S G+ + Sbjct: 299 NAQLFRVGGEEFTIIFRNRTSAEAAPIVKTIRDILVKKTFEVKDDLNVRVTVSIGVTDLK 358 Query: 229 HKEPISTIIY-RADQALYVAKKSGRNRVVCFSDI 261 + + Y R D+ LY AK + RN + D+ Sbjct: 359 KSDQSAKDFYKRVDKYLYQAKNNSRNSMSVEGDV 392 >gi|264676693|ref|YP_003276599.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|299529509|ref|ZP_07042946.1| diguanylate cyclase [Comamonas testosteroni S44] gi|262207205|gb|ACY31303.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|298722372|gb|EFI63292.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 359 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 10/223 (4%) Query: 42 VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101 + + + I + P L LSL+ + I S + + +LK L ++ Sbjct: 100 IALLCGMLFMSIAIRPTPQWAAPLAVQLSLLPLIILHSAYASWSNSRMLKTLARQNLQLK 159 Query: 102 QLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 L RID L+ + + A + + E+ ++ DID FK +ND +GH VGD V Sbjct: 160 LLGRIDPLTTVYSRDYWWKKARAALHQHRTAKEQTCLLVIDIDRFKSVNDLYGHIVGDDV 219 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + + + GR GG+EF ++ +EA +A +R + +QI I P Sbjct: 220 LKMIGLAIRNSLRSNDIAGRYGGDEFTVLCKHTTAKEAYSVA--MRICEKIAQIRIREYP 277 Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 +HI+ S G+A ++ I AD ALY AK GR++V+ Sbjct: 278 QLHISASIGVAAADEGFGSVTEWIKAADSALYSAKSGGRDQVM 320 >gi|262164362|ref|ZP_06032100.1| GGDEF family protein [Vibrio mimicus VM223] gi|262026742|gb|EEY45409.1| GGDEF family protein [Vibrio mimicus VM223] Length = 696 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 15/179 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQIND 144 +EL +++Q +R D L+ L N A+ + Y + +++ D+D FK +ND Sbjct: 521 QELQNVNRKLAQAARTDSLTQLYNRRAYEEFIQEYWQTYQAQQPITLAVMDLDGFKLVND 580 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH VGD+++ +D L +F P + RLGG+EFA G +Q N L ++I Sbjct: 581 QLGHQVGDELLRLFADLLRDIFDRPTDRLTRLGGDEFAVIMSGFEQQSH---LNLLAQVI 637 Query: 204 ENSQINISSGPSI-HITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFS 259 ++ + S H++IS G A ++T + ADQALY AK +G+ ++V FS Sbjct: 638 --TEFGQRTAQSFNHLSISIGAASIIPTSAMTTDSFFSLADQALYQAKANGKQQLVVFS 694 >gi|261854660|ref|YP_003261943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Halothiobacillus neapolitanus c2] gi|261835129|gb|ACX94896.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Halothiobacillus neapolitanus c2] Length = 788 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 23/191 (12%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----------ISSLGSYNEKLSIVFF 134 + G + EL + + L+ D L+GLLN F +S GS + L+++ F Sbjct: 339 VVGRDVTELHTTQEQFQILASQDELTGLLNRRFFQVEAQRWIDMLSDDGSKH--LALLVF 396 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+DYF+ IND++GH GD+++ ++ +L +P+ + R+GG+EFA ++ E+ Sbjct: 397 DLDYFRSINDSYGHERGDQLLQEMARRLQNECVASPLLIARMGGDEFAILVETDNKPESL 456 Query: 194 ILANDLRKIIENSQINISSGPSIHITI----SAGIA-ERCHKEPISTIIYRADQALYVAK 248 + K + I H+T+ S GI H I ++++AD A+Y AK Sbjct: 457 SALGEQVKSLTARPFQIE-----HLTLFTSASTGIVIWPEHGRSIGELLHQADSAMYAAK 511 Query: 249 KSGRNRVVCFS 259 + GRN FS Sbjct: 512 EQGRNGHAVFS 522 >gi|218461247|ref|ZP_03501338.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium etli Kim 5] Length = 264 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 13/202 (6%) Query: 62 EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF--- 118 + +L+E + ++ ++ + EL +S +I Q++ D L+ L N S F Sbjct: 1 QSVLLETRKVPVMDAGGGVVGVLGVARDVTELNVSRQKIHQMAFYDPLTSLPNRSLFNDR 60 Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 I+S S ++ + DID+FK +ND GHPVGD+++ + +L V R Sbjct: 61 LRQMITSAVSRGQRAGVALIDIDHFKVVNDTMGHPVGDELLCQAAARLKASVRDYDTVAR 120 Query: 175 LGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKE 231 LGG+EFA + + I L + E ++ G + I+ S GIA Sbjct: 121 LGGDEFAILLPEIRQGDDLGRIAGTILERFKEGFLLD---GKEVFISCSVGIALYPDDSA 177 Query: 232 PISTIIYRADQALYVAKKSGRN 253 ++ ++ AD A+Y+AK+SGRN Sbjct: 178 DVNDLVKYADSAMYLAKRSGRN 199 >gi|88704969|ref|ZP_01102681.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71] gi|88700664|gb|EAQ97771.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71] Length = 943 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 12/191 (6%) Query: 79 SLLLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130 S + GY++ S + + + +R+ L+R D L+GL N + +L S N + Sbjct: 477 SRVTGYVASFSDITTIKQNEHRLELLARQDPLTGLPNRTHLRHTLDSRLARAAPGNRSTT 536 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 I+F D+D FK +ND+ GH GD+++ S +L+ + R+GG+EF A Sbjct: 537 ILFIDLDQFKDVNDSLGHSAGDELLKVCSSRLLDSLRDDDILARVGGDEFVALLFDVPGY 596 Query: 191 E-AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAK 248 E + +A+ L ++E I I G ++ ++ S GI T++ AD A+Y AK Sbjct: 597 ENVSTIASKLIAVLEEP-IAI-GGETVRVSASIGICRYPEDGADTETLLRNADTAMYAAK 654 Query: 249 KSGRNRVVCFS 259 K+GR C+S Sbjct: 655 KAGRGTWECYS 665 >gi|316932665|ref|YP_004107647.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] gi|315600379|gb|ADU42914.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] Length = 776 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 15/171 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLS-IVFFDIDYFKQINDNFGHP 149 RI L+R D L+ L N +F + G +LS ++F D+D FKQIND GHP Sbjct: 330 RIVHLARYDELTALPNRVSFRDEIERILEAEHGRGKTRLSALLFIDLDQFKQINDTLGHP 389 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQ 207 GD+++ ++++L + V R GG+EF +S ++AA LA R+I++ S Sbjct: 390 CGDRLLCSVAERLRDMLRPEDLVARFGGDEFVVFQQNIASNEDAAALA---RRIVDRLSD 446 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + I S GIA ++ AD ALY AK GR CF Sbjct: 447 RYLIDHHVVEIGASVGIAMTSPGTKADILLKNADMALYRAKADGRG-TYCF 496 >gi|149181775|ref|ZP_01860266.1| two-component sensor histidine kinase [Bacillus sp. SG-1] gi|148850516|gb|EDL64675.1| two-component sensor histidine kinase [Bacillus sp. SG-1] Length = 569 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 9/139 (6%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS++ DID+FK +NDN+GH G++++ L+ +L + G V R GGEEF +S Sbjct: 427 LSLIMLDIDHFKSVNDNYGHQSGNEILFELARRLETLIGDEGTVARYGGEEFVILLPDTS 486 Query: 189 EQEAAILANDLRKIIENSQINISSG-------PSIHITISAGIAER-CHKEPISTIIYRA 240 +++A ++A +R+ I + + S + +T S G+A + ++I A Sbjct: 487 KEDAFLIAEIVRRTIADRPFILHSNLEAERKSLKLKVTASIGVASAPLDADDSMSLIRHA 546 Query: 241 DQALYV-AKKSGRNRVVCF 258 D+ALY AK++GRNRV + Sbjct: 547 DRALYTGAKQAGRNRVAEY 565 >gi|57866373|ref|YP_188006.1| GGDEF domain-containing protein [Staphylococcus epidermidis RP62A] gi|282875673|ref|ZP_06284544.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus epidermidis SK135] gi|57637031|gb|AAW53819.1| GGDEF domain protein [Staphylococcus epidermidis RP62A] gi|281295700|gb|EFA88223.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus epidermidis SK135] gi|329723284|gb|EGG59814.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus epidermidis VCU144] gi|329736804|gb|EGG73069.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus epidermidis VCU028] gi|329738000|gb|EGG74224.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus epidermidis VCU045] Length = 358 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 14/205 (6%) Query: 63 YILVENLSLVIIS--ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 Y LVE L L+ IS ITI+ + ++ + F NR + D L+GL N F Sbjct: 150 YELVEILVLIPISFIITIASAITFVD---IWHFFSLVNRYENEDKYDYLTGLGNVKEFDR 206 Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L + K L+++ DID FK +ND++ H GD V+ +S L + Sbjct: 207 HLNEVSSKAEEKKQSLALLLIDIDGFKDVNDHYSHQSGDAVLKQMSQLLKNYVPNQFKIF 266 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF+ + ++ LA ++R +E S ++ + I +++S G+ ++ Sbjct: 267 RNGGEEFSVVIRDYTLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTQEDRK 326 Query: 234 S--TIIYRADQALYVAKKSGRNRVV 256 S + AD ++VAK GRN+V+ Sbjct: 327 SQRKVFKDADDMVHVAKSEGRNKVM 351 >gi|262201074|ref|YP_003272282.1| diguanylate cyclase [Gordonia bronchialis DSM 43247] gi|262084421|gb|ACY20389.1| diguanylate cyclase [Gordonia bronchialis DSM 43247] Length = 356 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 11/167 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G+LN S G ++ + D+D+FK++ND GH VGD ++ Sbjct: 173 LSDTDPLTGVLNRRGLAKSWGGMLSASEAGQGRIGFIEADVDHFKELNDRHGHSVGDSIL 232 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQINISSGP 214 +++ L G V R+GGEEF E +LR + EN +S G Sbjct: 233 VEIAETLKKAVGPQALVARMGGEEFVIIDHTDGVAELTRQCENLRTAVDENVAATVSLG- 291 Query: 215 SIHITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ T+S A++ + + + AD +LYVAK+SGRN+VV S Sbjct: 292 AVCATVSFCRADKPVSDSAIMDELFGIADSSLYVAKRSGRNQVVVTS 338 >gi|254504589|ref|ZP_05116740.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222440660|gb|EEE47339.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 472 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 18/170 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVG 151 RI + D L+G+ N G + +++ + D+D FK IND FGH G Sbjct: 298 RRIEHNALHDALTGIGNRRMMTQYFGRAEQSDKSSDEIAALLIDLDGFKSINDRFGHATG 357 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINI 210 D+VI +S++L + + R+GG+EF A+ +EQ E A LA D+ I N I++ Sbjct: 358 DEVIKVISERLRTLLLDQELLVRMGGDEFLVASTVRTEQGELAKLAQDILDRI-NQPIDL 416 Query: 211 SS-----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G SI I+++ R +++ AD+A+Y AK+SGRN+ Sbjct: 417 PGDQGAVGASIGISVT-----RIRPNLERSLLQAADEAMYAAKRSGRNQA 461 >gi|156974316|ref|YP_001445223.1| response regulator [Vibrio harveyi ATCC BAA-1116] gi|156525910|gb|ABU70996.1| hypothetical protein VIBHAR_02031 [Vibrio harveyi ATCC BAA-1116] Length = 448 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 26/169 (15%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G +N A S L ++ SI++ D+D FK++ND +GH +GD Sbjct: 275 AELAHRDALTGAMNRHAVQSWLDQQARQVRWGHDSFSILYMDLDKFKRVNDKYGHQMGDD 334 Query: 154 VIAFLSDQLVVVFGTPMF----VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 ++ + V+V + + + R GGEEF ++ ++A A +R N Sbjct: 335 ILR----EFVMVIASSILPEDRLVRWGGEEFVVFCPNTNIEQAVKKAELIRD-------N 383 Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +H +T S G+A+ E +S + RAD+ LY+AK++GRNR+ Sbjct: 384 VEKHLWVHGELLTCSIGVAQ-MQNERVSETMARADEVLYLAKRNGRNRI 431 >gi|83646100|ref|YP_434535.1| response regulator [Hahella chejuensis KCTC 2396] gi|83634143|gb|ABC30110.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 539 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 9/165 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D L+G+ N F + L Y L +V DID FK++NDN GH GD Sbjct: 361 LKEMALRDPLTGIHNRRFFQNRLSYEFGRAKRYKSDLILVLLDIDKFKEVNDNKGHGAGD 420 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ L+ L V R+GGEEF + + L + I + N + Sbjct: 421 EVLIKLASFLKHSLRISDIVARIGGEEFCIILPEKLDPDVRSFIFRLHRDISLLEFNYIN 480 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P HIT S G+A + I+ +AD ALY AK++GRNR++ Sbjct: 481 DP-FHITCSMGVATLKTETRDPGEILKQADDALYCAKRTGRNRII 524 >gi|229095277|ref|ZP_04226269.1| Sensory box/GGDEF [Bacillus cereus Rock3-29] gi|229114225|ref|ZP_04243646.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] gi|228669245|gb|EEL24666.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] gi|228688136|gb|EEL42022.1| Sensory box/GGDEF [Bacillus cereus Rock3-29] Length = 569 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ I++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIAGKKEFGIIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNEHTQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|329916736|ref|ZP_08276411.1| Putative diguanylate cyclase [Oxalobacteraceae bacterium IMCC9480] gi|327544666|gb|EGF30118.1| Putative diguanylate cyclase [Oxalobacteraceae bacterium IMCC9480] Length = 436 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 9/165 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + D L+GLLN F ++ L ++ D D+FK IND FGH VG Sbjct: 270 KMMHATSCDDLTGLLNRRVFFDKAETELNRWRRSKRPLCVLVIDADHFKSINDRFGHDVG 329 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ L+ + V R+GGEEFA + +A LA +R + N + + Sbjct: 330 DSVLKALAVAIKHCVRQLDIVSRIGGEEFAVLLPYTGIDDAEDLAERVRHCVANLVVEPA 389 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 I +TIS G+AE + ++ AD ALY AK +GRN+V Sbjct: 390 E-LDIALTISVGVAEMNDSISDMRGLVKAADGALYCAKNAGRNQV 433 >gi|314933054|ref|ZP_07840420.1| GGDEF domain protein [Staphylococcus caprae C87] gi|313654373|gb|EFS18129.1| GGDEF domain protein [Staphylococcus caprae C87] Length = 356 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 10/203 (4%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 Y LVE L L+ IS+ I++ I+ + F NR + D L+GL N F L Sbjct: 148 YDLVEILVLIPISLIITIA-SAITFVDIWHFFSLVNRYENEDKYDYLTGLGNVKEFDRHL 206 Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 N L+++ DID FK +ND++ H GD V+ +S L + R Sbjct: 207 NEVSRIAEEKNHSLALLLIDIDGFKDVNDSYSHQSGDAVLKQMSQLLKNYVPNQFKIFRN 266 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS- 234 GGEEF+ S ++ LA ++R +E S ++ I +++S G+ + S Sbjct: 267 GGEEFSVVIRNYSLDQSVKLAENIRSGVEKSSFHLPGKEVIKLSVSIGVGYLTQDDRKSQ 326 Query: 235 -TIIYRADQALYVAKKSGRNRVV 256 + AD ++VAK GRN+V+ Sbjct: 327 RKVFKDADDMVHVAKNEGRNKVM 349 >gi|306845944|ref|ZP_07478511.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1] gi|306273579|gb|EFM55424.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1] Length = 461 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 9/170 (5%) Query: 96 SYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S R S D L+GL N ++ + LSI+ D+D+FKQ+N+ +GH Sbjct: 288 SMERTITQSVTDGLTGLHNRHYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQYGH 347 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ S +L + R GGEEF + Q A +A +R I+ + Sbjct: 348 GAGDHVLREFSARLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERVRGIVAEAPF 407 Query: 209 NISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +G +T+S G+A R + + + RA AL AK+SGRNR+V Sbjct: 408 VLDNGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIV 457 >gi|222056105|ref|YP_002538467.1| diguanylate cyclase with GAF sensor [Geobacter sp. FRC-32] gi|221565394|gb|ACM21366.1| diguanylate cyclase with GAF sensor [Geobacter sp. FRC-32] Length = 352 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 9/168 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 +NR L+ D L+GL NH F + Y++ LSI+ D+D FK+ ND +GH Sbjct: 176 HNRTKLLAITDALTGLYNHRHFHHIFSIEMGRCKRYHKDLSIIMLDVDDFKKFNDRYGHS 235 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ + + + + R GGEEF + ++A +A LR+IIE Sbjct: 236 TGDLVLTSIGELIAGTLRGVDYAFRYGGEEFIVLLPETRLEQAFQVAERLRQIIETETAT 295 Query: 210 ISSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + H +T+S G+A + + + D LY AK G+N+V Sbjct: 296 KFTKLAGHGVTVSVGVASYPVDADKKDQLFEKVDALLYQAKVFGKNKV 343 >gi|209809703|ref|YP_002265242.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] gi|208011266|emb|CAQ81706.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] Length = 416 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 14/163 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 L+ Y RI ++ D ++G L FI + EK + DIDYFK +NDN+GH VGD Sbjct: 261 LYRFYLRIHRVQCNDRMTGFLRRD-FIENKLKRVEKAFFLIIDIDYFKLVNDNYGHDVGD 319 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILANDLRKIIENSQI 208 +VI ++ ++ R GGEEF S + +A + +R IEN +I Sbjct: 320 QVIKVVTQRIKESIRDHDIAIRWGGEEFVIIFYQMDFNSFKNKAEM----IRARIENERI 375 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + ITIS G +E+ E I RAD+ALY +KK G Sbjct: 376 -----EDMDITISIGGSEQQESELAFEAIKRADRALYQSKKWG 413 >gi|126651299|ref|ZP_01723506.1| hypothetical protein BB14905_12055 [Bacillus sp. B14905] gi|126591828|gb|EAZ85911.1| hypothetical protein BB14905_12055 [Bacillus sp. B14905] Length = 505 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 17/219 (7%) Query: 52 YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111 Y+ T F +E L +N + + I+L+ ++ ++ ++ ++ L+ D L+G Sbjct: 285 YVKYTNFTKME-ALQKNTKQFWVLLVIALVTAFVMLLVINKIL---SKTIHLATFDPLTG 340 Query: 112 LLNHSAFISSLGSYNEKLSI-----VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 + N + +I + S +K I + D+D FKQ+ND FGH GD ++ + L V Sbjct: 341 VYNRATYIRKMDSLLKKRKINRPGLLLIDLDNFKQVNDQFGHAEGDHILIGTAKILKKVV 400 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH----ITISA 222 FV R GG+EFA ++E LA+ + I + G I +++S Sbjct: 401 KKDGFVVRFGGDEFAIVLYDTTEHHMQQLADAILAQIRTLKF---EGQDIEKWSVLSVSM 457 Query: 223 GIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSD 260 G A H E ++ RADQALY +K +G+++ +++ Sbjct: 458 GGAIYHHPEDSEMSLFERADQALYQSKNAGKDQYSSYAE 496 >gi|115526721|ref|YP_783632.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] gi|115520668|gb|ABJ08652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] Length = 1223 Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 5/170 (2%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 S +IS L+ D L+ L N + +L S + +S++ D+D FK +ND FGH G Sbjct: 788 SARQISYLAFHDGLTELANRAELNKQGHLALESSDRPISVLLIDLDRFKAVNDTFGHAAG 847 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ ++ ++ + G V R+GG+EFA +Q A +A R I Q Sbjct: 848 DRLLQLVAIRMRALAGPKDLVARVGGDEFAILQAPCPDQREAAIALASRTIEVLRQPFDL 907 Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 G I S GIA R + +I++AD ALY K GRN + + D Sbjct: 908 GGKQASIGASIGIAVRSPQTVRFDDLIHQADLALYEIKSGGRNDCLLYED 957 >gi|15923736|ref|NP_371270.1| hypothetical protein SAV0746 [Staphylococcus aureus subsp. aureus Mu50] gi|15926423|ref|NP_373956.1| hypothetical protein SA0701 [Staphylococcus aureus subsp. aureus N315] gi|21282437|ref|NP_645525.1| hypothetical protein MW0708 [Staphylococcus aureus subsp. aureus MW2] gi|49483003|ref|YP_040227.1| hypothetical protein SAR0800 [Staphylococcus aureus subsp. aureus MRSA252] gi|49485618|ref|YP_042839.1| hypothetical protein SAS0711 [Staphylococcus aureus subsp. aureus MSSA476] gi|57651584|ref|YP_185683.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus COL] gi|82750450|ref|YP_416191.1| hypothetical protein SAB0698c [Staphylococcus aureus RF122] gi|87161910|ref|YP_493433.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194524|ref|YP_499319.1| hypothetical protein SAOUHSC_00760 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267206|ref|YP_001246149.1| diguanylate cyclase [Staphylococcus aureus subsp. aureus JH9] gi|150393255|ref|YP_001315930.1| diguanylate cyclase [Staphylococcus aureus subsp. aureus JH1] gi|151220927|ref|YP_001331749.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156979074|ref|YP_001441333.1| hypothetical protein SAHV_0743 [Staphylococcus aureus subsp. aureus Mu3] gi|161509014|ref|YP_001574673.1| diguanylate cyclase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141236|ref|ZP_03565729.1| diguanylate cyclase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315820|ref|ZP_04839033.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731374|ref|ZP_04865539.1| ABC superfamily ATP binding cassette transporter, binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255005537|ref|ZP_05144138.2| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424866|ref|ZP_05601293.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427534|ref|ZP_05603933.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430165|ref|ZP_05606549.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432866|ref|ZP_05609226.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus E1410] gi|257435770|ref|ZP_05611818.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus M876] gi|257794933|ref|ZP_05643912.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258418249|ref|ZP_05682514.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258421546|ref|ZP_05684471.1| GGDEF domain-containing protein [Staphylococcus aureus A9719] gi|258430741|ref|ZP_05688453.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus aureus A9299] gi|258441767|ref|ZP_05691039.1| GGDEF domain-containing protein [Staphylococcus aureus A8115] gi|258449603|ref|ZP_05697705.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|258452954|ref|ZP_05700948.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258454003|ref|ZP_05701975.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262049530|ref|ZP_06022400.1| hypothetical protein SAD30_0952 [Staphylococcus aureus D30] gi|262052343|ref|ZP_06024546.1| hypothetical protein SA930_1069 [Staphylococcus aureus 930918-3] gi|269202366|ref|YP_003281635.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus ED98] gi|282894515|ref|ZP_06302744.1| membrane protein [Staphylococcus aureus A8117] gi|282903376|ref|ZP_06311267.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus C160] gi|282905156|ref|ZP_06313013.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908132|ref|ZP_06315963.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910391|ref|ZP_06318195.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282913586|ref|ZP_06321375.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus M899] gi|282918539|ref|ZP_06326276.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C427] gi|282922043|ref|ZP_06329740.1| conserved hypothetical membrane protein [Staphylococcus aureus A9765] gi|282923505|ref|ZP_06331185.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C101] gi|282926612|ref|ZP_06334242.1| conserved hypothetical membrane protein [Staphylococcus aureus A10102] gi|283957578|ref|ZP_06375031.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284023767|ref|ZP_06378165.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus 132] gi|293500631|ref|ZP_06666482.1| membrane protein in llm 5'region [Staphylococcus aureus subsp. aureus 58-424] gi|293509579|ref|ZP_06668290.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293524165|ref|ZP_06670852.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus M1015] gi|294850533|ref|ZP_06791261.1| membrane protein in llm 5'region [Staphylococcus aureus A9754] gi|295406469|ref|ZP_06816275.1| membrane protein in llm 5'region [Staphylococcus aureus A8819] gi|295427324|ref|ZP_06819959.1| membrane protein in llm 5'region [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275155|ref|ZP_06857662.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus MR1] gi|297208527|ref|ZP_06924956.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245195|ref|ZP_06929069.1| membrane protein in llm 5'region [Staphylococcus aureus A8796] gi|297590322|ref|ZP_06948961.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus MN8] gi|300912619|ref|ZP_07130062.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus TCH70] gi|304381633|ref|ZP_07364283.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|75383221|sp|Q7DLB7|YLLM_STAAU RecName: Full=Uncharacterized membrane protein in llm 5'region; AltName: Full=ORF1 gi|81649746|sp|Q6GB84|Y711_STAAS RecName: Full=Uncharacterized membrane protein SAS0711 gi|81651530|sp|Q6GIP5|Y800_STAAR RecName: Full=Uncharacterized membrane protein SAR0800 gi|81694985|sp|Q5HHS4|Y809_STAAC RecName: Full=Uncharacterized membrane protein SACOL0809 gi|81704599|sp|Q7A1G8|Y708_STAAW RecName: Full=Uncharacterized membrane protein MW0708 gi|81704864|sp|Q7A2V2|Y746_STAAM RecName: Full=Uncharacterized membrane protein SAV0746 gi|81781939|sp|Q99VM8|Y701_STAAN RecName: Full=Uncharacterized membrane protein SA0701 gi|122539994|sp|Q2G061|Y760_STAA8 RecName: Full=Uncharacterized membrane protein SAOUHSC_00760 gi|123486772|sp|Q2FIP5|Y730_STAA3 RecName: Full=Uncharacterized membrane protein SAUSA300_0730 gi|123547672|sp|Q2YSF9|Y698_STAAB RecName: Full=Uncharacterized membrane protein SAB0698c gi|13700637|dbj|BAB41934.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246515|dbj|BAB56908.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|14787098|dbj|BAB62079.1| ORF1~ORF1 is located upstream of llm in the opposite direction. [Staphylococcus aureus] gi|21203874|dbj|BAB94573.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49241132|emb|CAG39810.1| putative membrane protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244061|emb|CAG42487.1| putative membrane protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285770|gb|AAW37864.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus COL] gi|82655981|emb|CAI80386.1| probable membrane protein [Staphylococcus aureus RF122] gi|87127884|gb|ABD22398.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202082|gb|ABD29892.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740275|gb|ABQ48573.1| diguanylate cyclase [Staphylococcus aureus subsp. aureus JH9] gi|149945707|gb|ABR51643.1| diguanylate cyclase [Staphylococcus aureus subsp. aureus JH1] gi|150373727|dbj|BAF66987.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721209|dbj|BAF77626.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367823|gb|ABX28794.1| diguanylate cyclase GGDEF domain protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724899|gb|EES93628.1| ABC superfamily ATP binding cassette transporter, binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257272436|gb|EEV04559.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275727|gb|EEV07200.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279362|gb|EEV09963.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282281|gb|EEV12416.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus E1410] gi|257284961|gb|EEV15080.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus M876] gi|257788905|gb|EEV27245.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257839042|gb|EEV63521.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257842472|gb|EEV66896.1| GGDEF domain-containing protein [Staphylococcus aureus A9719] gi|257849413|gb|EEV73383.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus aureus A9299] gi|257852236|gb|EEV76163.1| GGDEF domain-containing protein [Staphylococcus aureus A8115] gi|257857111|gb|EEV80010.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257859465|gb|EEV82319.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257863868|gb|EEV86624.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|259159783|gb|EEW44824.1| hypothetical protein SA930_1069 [Staphylococcus aureus 930918-3] gi|259162366|gb|EEW46938.1| hypothetical protein SAD30_0952 [Staphylococcus aureus D30] gi|262074656|gb|ACY10629.1| GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus ED98] gi|269940323|emb|CBI48700.1| putative membrane protein [Staphylococcus aureus subsp. aureus TW20] gi|282314373|gb|EFB44763.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C101] gi|282317673|gb|EFB48045.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus C427] gi|282322618|gb|EFB52940.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus M899] gi|282325783|gb|EFB56091.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327797|gb|EFB58079.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331563|gb|EFB61075.1| diguanylate cyclase GGDEF domain-containing protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282591505|gb|EFB96577.1| conserved hypothetical membrane protein [Staphylococcus aureus A10102] gi|282593701|gb|EFB98693.1| conserved hypothetical membrane protein [Staphylococcus aureus A9765] gi|282596331|gb|EFC01292.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus C160] gi|282763228|gb|EFC03359.1| membrane protein [Staphylococcus aureus A8117] gi|283791029|gb|EFC29844.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus A017934/97] gi|285816448|gb|ADC36935.1| Hypothetical protein with diguanylate-cyclase (GGDEF) domain [Staphylococcus aureus 04-02981] gi|290921128|gb|EFD98189.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus M1015] gi|291095636|gb|EFE25897.1| membrane protein in llm 5'region [Staphylococcus aureus subsp. aureus 58-424] gi|291467676|gb|EFF10191.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|294822612|gb|EFG39053.1| membrane protein in llm 5'region [Staphylococcus aureus A9754] gi|294968614|gb|EFG44637.1| membrane protein in llm 5'region [Staphylococcus aureus A8819] gi|295128712|gb|EFG58343.1| membrane protein in llm 5'region [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886782|gb|EFH25686.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177866|gb|EFH37115.1| membrane protein in llm 5'region [Staphylococcus aureus A8796] gi|297576621|gb|EFH95336.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus MN8] gi|298694078|gb|ADI97300.1| hypothetical protein SAOV_0783c [Staphylococcus aureus subsp. aureus ED133] gi|300886865|gb|EFK82067.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus TCH70] gi|302332455|gb|ADL22648.1| diguanylate cyclase GGDEF domain protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302750643|gb|ADL64820.1| diguanylate cyclase GGDEF domain protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339996|gb|EFM05940.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438828|gb|ADQ77899.1| GGDEF domain protein [Staphylococcus aureus subsp. aureus TCH60] gi|312829238|emb|CBX34080.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129430|gb|EFT85423.1| diguanylate cyclase GGDEF domain protein [Staphylococcus aureus subsp. aureus CGS03] gi|315194364|gb|EFU24756.1| diguanylate cyclase GGDEF domain protein [Staphylococcus aureus subsp. aureus CGS00] gi|315196421|gb|EFU26772.1| diguanylate cyclase GGDEF domain protein [Staphylococcus aureus subsp. aureus CGS01] gi|320141989|gb|EFW33817.1| diguanylate cyclase domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329313467|gb|AEB87880.1| Uncharacterized membrane protein [Staphylococcus aureus subsp. aureus T0131] gi|329723785|gb|EGG60313.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus aureus subsp. aureus 21189] gi|329724531|gb|EGG61038.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus aureus subsp. aureus 21172] gi|329729623|gb|EGG66024.1| diguanylate cyclase (GGDEF) domain protein [Staphylococcus aureus subsp. aureus 21193] Length = 356 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 NR + D L+GL N F L + K ++++ DID FK +ND + H Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 241 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + R GGEEF+ S ++ LA ++R +E S ++ Sbjct: 242 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 301 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 + I +++S G+ +P S + AD ++VAK GRN+V+ Sbjct: 302 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 349 >gi|311696803|gb|ADP99676.1| diguanylate cyclase [marine bacterium HP15] Length = 336 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 32/184 (17%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL---GSYNEKL----SIVFFDIDYFKQINDNFGHPV 150 R+ L+ ID L+G+ N + L + E+ ++V DID+FK+IND GH V Sbjct: 160 ERLEHLATIDPLTGIKNRRSMDQELDLAAANAERTGLPYALVMLDIDHFKKINDEHGHGV 219 Query: 151 GDKVIAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 GD V+ L SDQL R GGEEF G + N+L+ Sbjct: 220 GDGVLTDLVALLKQNTRKSDQLF----------RYGGEEFVLLLPGVDGIGLKAVMNNLQ 269 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +++ + P +T S G+A H E + + + RAD ALY AK++GR+ VV F+D Sbjct: 270 QVLRKYMKH----PGGSVTASFGVALLEHGESVDSWLARADAALYEAKEAGRDCVV-FAD 324 Query: 261 IENN 264 + Sbjct: 325 AQRT 328 >gi|326790142|ref|YP_004307963.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium lentocellum DSM 5427] gi|326540906|gb|ADZ82765.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium lentocellum DSM 5427] Length = 949 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 18/167 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 R+ +L+ D L+G LN F+ SL G + +++F D+D FK+IND GH +GD Sbjct: 517 RVRKLAFFDVLTGCLNKQTFMESLETWLSPGEAIKDAALLFIDLDDFKKINDTLGHEMGD 576 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRKIIENSQ 207 K++ +++ L + F+ R GG+EF + + LG ++ + N I Sbjct: 577 KLLNYVAKVLRHIIPQDSFISRFGGDEFVIFKTSVSDLGEIQEMVYSILN-----IFQDP 631 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253 I I G IHIT S GIA I+ + AD A+Y AK +G+N Sbjct: 632 IRI-DGKDIHITCSIGIALYPLDGTSGDILLKNADTAMYKAKDNGKN 677 >gi|317050266|ref|YP_004111382.1| diguanylate cyclase [Desulfurispirillum indicum S5] gi|316945350|gb|ADU64826.1| diguanylate cyclase [Desulfurispirillum indicum S5] Length = 643 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 9/170 (5%) Query: 98 NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N + + + +D L+GL N IS + + + ++ DIDYFKQIND FGH V Sbjct: 466 NTLRESAMVDTLTGLYNRRFLQEHTKQIISGVLRRRKTIGLLLCDIDYFKQINDTFGHDV 525 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ + + V R GGEEF L + +A +A +R I + +I + Sbjct: 526 GDLVLKEAAACMRNSVREADIVIRFGGEEFLILLLDVDQGDAIDVAEKIRVKIGDMKITV 585 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I TIS G++E + I AD ALY AK++GRN+ V F Sbjct: 586 PDA-VIQKTISIGVSEFPGDTDGFWQAIKFADVALYKAKETGRNKTVRFE 634 >gi|163844769|ref|YP_001622424.1| diguanylate cyclase [Brucella suis ATCC 23445] gi|163675492|gb|ABY39602.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445] Length = 237 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 23/229 (10%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97 IAT+I I+ G+ G++ V L +++ I++ LG S L+EL SY Sbjct: 18 IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGGFWFSRLEELERSYR 73 Query: 98 ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148 N +++++ +D L+GLLN +FI + N+ + +F D+DY KQIND +GH Sbjct: 74 TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGARGWFLIVDVDYLKQINDQYGH 133 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204 P GD I ++ L + + R+GG+EF A G+ ++L++ LR ++ Sbjct: 134 PAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 193 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + N+ S +T+S G + ++ AD+ LY KKS R Sbjct: 194 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 237 >gi|170727942|ref|YP_001761968.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169813289|gb|ACA87873.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 328 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 26/179 (14%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNE---------------------KLSIVFFDIDYFKQI 142 S D L+GLLN AF+ L + + + FDID FK I Sbjct: 137 SETDPLTGLLNRKAFLPRLTKVAKLIKQEAIDCALDPASCDLSAKRYWLCIFDIDKFKVI 196 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH GD+++ L + F + R GG+EF + E L Sbjct: 197 NDTFGHLYGDEILIDLVKVMKATFNELDSLFRFGGDEFVVILSKREKAEMLHLCESF--- 253 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + +++I G + +TIS GI E E S ++ +AD+ALY K++GR+RV + D+ Sbjct: 254 --SHKLSIHHGREVKVTISMGIIEINSIEEPSELLVKADKALYYIKETGRDRVGLYEDL 310 >gi|146305515|ref|YP_001185980.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas mendocina ymp] gi|145573716|gb|ABP83248.1| response regulator receiver modulated diguanylate cyclase [Pseudomonas mendocina ymp] Length = 422 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 14/168 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q ++ D L+GL N AF ++S+ D+D+FKQIND FGH GD Sbjct: 252 LKQAAQFDALTGLNNRRAFYEQGLQLLQQAQREGREVSVAMLDLDHFKQINDGFGHASGD 311 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + L M +GRLGGEEFA +L +++ A L ++LR + + ++ ++ Sbjct: 312 SALVVFARALSAALPQ-MLLGRLGGEEFALLSLDEADRVEAAL-DELRH--QCAALHYAA 367 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + ++ SAG+ R + + ++++ AD LY AK+ G + C +D Sbjct: 368 G-APPLSFSAGLY-RGEPDDLESLLHEADVRLYRAKQQGPH-ARCEAD 412 >gi|330830625|ref|YP_004393577.1| sensor histidine kinase [Aeromonas veronii B565] gi|328805761|gb|AEB50960.1| Sensor histidine kinase [Aeromonas veronii B565] Length = 512 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 79/170 (46%), Gaps = 24/170 (14%) Query: 98 NRISQLSRIDCLSGLLNHS--AFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKV 154 R++ LS D L+G N + G + I+ FD D+FK++NDNFGH VGD V Sbjct: 345 QRLNYLSCHDALTGAFNRHYLVLLEQAGELARLQAGILMFDADHFKRVNDNFGHAVGDIV 404 Query: 155 IAFL----------SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + L +D+L+ R GGEEF + + LA LRK + Sbjct: 405 LIRLVQICQQQIRPTDRLI----------RWGGEEFLLLIGRADATQLGELAERLRKAVA 454 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + + P + +TIS G P+ + RAD ALY AK +GRNR Sbjct: 455 DHDW-AAIEPGLEVTISLGYLPHQENLPLHEAVRRADVALYQAKANGRNR 503 >gi|328470826|gb|EGF41737.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus 10329] Length = 637 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 18/168 (10%) Query: 100 ISQLSRIDCLSGLLNH---SAFISSLG--SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++Q S D L+GL N ++ + + + ++ D+D+FK ND +GH +GD++ Sbjct: 468 LTQESTTDLLTGLHNRRYLEVWLEKMARRTPDRTFALAVLDVDHFKAFNDTYGHDIGDQM 527 Query: 155 IAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + ++ +F G R GGEEF + + A LR +IEN+ + I Sbjct: 528 LMHIAS----IFNESTRSGDLLIRWGGEEFVLLVEVNDPNDCAKSLERLRHVIENTPLII 583 Query: 211 SSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNR 254 S P I+ TIS G +R K+ + ADQALY AK++GRN+ Sbjct: 584 DSKP-INATISLGAVDRLSAQTIKQEWDQWFFLADQALYDAKQAGRNQ 630 >gi|325925986|ref|ZP_08187352.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] gi|325543582|gb|EGD14999.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] Length = 983 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN + +++L L++V D+D+FK +ND GH GD V+A + Sbjct: 818 DELTGLLNRAGILAALREMLLHAEHTGRPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 877 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ + +GR GGEE A G + L I + I+ G +H+T Sbjct: 878 RRMDTLMRGDDRIGRYGGEELLALLPGLNLDATHRLDALHHGICGDYPID---GGWLHVT 934 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E + ++ RAD ALY AK+SGRNRV Sbjct: 935 CSVGVAWFQRGETLEQLLARADAALYRAKRSGRNRV 970 >gi|224826822|ref|ZP_03699922.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002] gi|224601042|gb|EEG07225.1| diguanylate cyclase with PAS/PAC sensor [Lutiella nitroferrum 2002] Length = 770 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 20/175 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 RI L+ D L+GL N + + Y +L+I+F D+D FK IND +GH V Sbjct: 594 ERIRHLAHHDYLTGLPNRAHLLERASQALALARRYQRRLAILFLDLDRFKPINDRYGHDV 653 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-----AALGSSEQEAAILANDLRKIIEN 205 GD V+ ++D+L+ + V RLGG+EF S EQ LA+ LR IE Sbjct: 654 GDVVLRTVADRLLALVRESDTVCRLGGDEFVILLAEYHDFASVEQ----LAHTLRTAIE- 708 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 Q + ++ S GIA H + + +I RAD A+Y A K+G +C + Sbjct: 709 -QPCEVGALRLAVSASIGIATYPEHGDSVGALIQRADAAMYRA-KTGAAPPICIA 761 >gi|223983983|ref|ZP_03634141.1| hypothetical protein HOLDEFILI_01431 [Holdemania filiformis DSM 12042] gi|223964059|gb|EEF68413.1| hypothetical protein HOLDEFILI_01431 [Holdemania filiformis DSM 12042] Length = 406 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 20/170 (11%) Query: 100 ISQLSRIDCLSGLLNH---SAFISS---LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 + +L+ DCL+GL N I +++++ DID FKQIND +GH GD+ Sbjct: 242 LRRLAHQDCLTGLYNRFKIQQLIEETLRCAPEGKRMTLAVMDIDNFKQINDAYGHDCGDE 301 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINIS 211 + + ++ +F VGR+GG+EF G+ EQ +A L +K+ Q Sbjct: 302 ALRQTAAEIRELFAPEDLVGRIGGDEFVVLLQEAGTGEQASARLEQIRQKLQHRHQP--- 358 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-----ADQALYVAKKSGRNRVV 256 P++ IS I C P+ YR AD AL AK+ G+N V Sbjct: 359 --PAVLTGISCSIG--CAFFPVQGTTYRQLFLKADAALIQAKRQGKNSCV 404 >gi|192289273|ref|YP_001989878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] gi|192283022|gb|ACE99402.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] Length = 879 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 RIS L+ D L+ L N + F L S ++++ DID FK IND GHPVGD Sbjct: 448 RISYLAHFDSLTDLPNRTMFRQRLENELQRASRGAPFALLYIDIDEFKSINDTLGHPVGD 507 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211 +++ ++ +L FV RLGG+EFA +G S EA L + + + I + Sbjct: 508 ELLKQVAVRLRDCVRETDFVARLGGDEFAIIQIGVSGADEATALVDRIYESIRLPYQCLG 567 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 S +I IA R + + ++ AD A+Y AK GR Sbjct: 568 HQLSTDASIGIAIAPRDGAD-LDQLVKNADLAMYSAKAEGR 607 >gi|39933854|ref|NP_946130.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris CGA009] gi|39647701|emb|CAE26221.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain [Rhodopseudomonas palustris CGA009] Length = 904 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 RIS L+ D L+ L N + F L S ++++ DID FK IND GHPVGD Sbjct: 473 RISYLAHFDSLTDLPNRTMFRQRLENELQRASRGAPFALLYIDIDEFKSINDTLGHPVGD 532 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211 +++ ++ +L FV RLGG+EFA +G S EA L + + + I + Sbjct: 533 ELLKQVAVRLRDCVRETDFVARLGGDEFAIIQIGVSGADEATALVDRIYESIRLPYQCLG 592 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 S +I IA R + + ++ AD A+Y AK GR Sbjct: 593 HQLSTDASIGIAIAPRDGAD-LDQLVKNADLAMYSAKAEGR 632 >gi|330951652|gb|EGH51912.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7] Length = 630 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 21/210 (10%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115 +G +L ++ + ++ T LL+ + + EL + +I L+ D L+GL N Sbjct: 245 HGAPLVLDISVEFITLNNTACLLM---NARDIGELKNAQAQIQHLAYHDPLTGLPNRALL 301 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L Sbjct: 302 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361 Query: 172 VGRLGGEEFAA--AALGSSEQEAAI----LANDLRKIIENSQINISSGPSIHITISAGIA 225 V RLGG+EF L S+ E LA++LR ++ ++ G + +T S G+ Sbjct: 362 VARLGGDEFVVLICGLEGSQDEVTRQVRELADNLRNLL--AEPMFLDGHRLQVTPSIGVV 419 Query: 226 --ERCHKEPISTIIYRADQALYVAKKSGRN 253 P + ++ RAD ALY AK GRN Sbjct: 420 LIPDDGLTP-ADLLKRADIALYRAKDCGRN 448 >gi|296273930|ref|YP_003656561.1| ammonium transporter [Arcobacter nitrofigilis DSM 7299] gi|296098104|gb|ADG94054.1| ammonium transporter [Arcobacter nitrofigilis DSM 7299] Length = 605 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 9/171 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHP 149 +L S N + + D L+G+ N + N + DID FK +ND +GH Sbjct: 440 KLTTSNNNLRTKAYYDALTGIHNRRGLYERIKDKILNPNYCLAILDIDKFKLVNDTYGHD 499 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+++ L++ + R GGEEF Q A +A LR I ++ Sbjct: 500 VGDEILKELANSVSKKIRQNDIFARWGGEEFILLLKTKDLQVAENIAEKLRIDISKTEF- 558 Query: 210 ISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 P++ HIT S GI+ + ++ + AD+ALY AK++GRNRV F Sbjct: 559 ----PTVKHITASFGISSFKNSEQSFEEVFKNADKALYQAKENGRNRVFTF 605 >gi|296108300|ref|YP_003620001.1| sensory box protein, EAL domain, GGDEF domain, signal transduction protein [Legionella pneumophila 2300/99 Alcoy] gi|295650202|gb|ADG26049.1| sensory box protein, EAL domain, GGDEF domain, signal transduction protein [Legionella pneumophila 2300/99 Alcoy] Length = 371 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 108/224 (48%), Gaps = 25/224 (11%) Query: 48 IFLFYIGLTPFYGL--EYIL-VENLS-LVIISITISLLLGYISGS-----ILKE----LF 94 +F FYI P Y + EY+ ++N + L I ++ ++L ++ + +LKE L Sbjct: 143 VFEFYI---PIYSISQEYVFFLDNTNHLFIFALIFTVLYHFLVQNSQYELLLKEQNYLLI 199 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 + LS D L+ L N F + L + E +++ F D+D FK IND +G Sbjct: 200 ADKEKFHYLSHHDSLTNLPNRPYFHAHLQTLLENTDTKKEAITLYFMDLDKFKPINDEYG 259 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+++ S +L F F+ RLGG+EF A + + A A LR E Q Sbjct: 260 HEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPHDQIA-EALTLRIEQEFEQ 318 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250 + +G +IH TIS GIA + ++ AD+A+Y K+ Sbjct: 319 PFVINGQTIHCTISVGIANYPRNAKNAEDLLKWADKAMYDNKRK 362 >gi|262379338|ref|ZP_06072494.1| WspR [Acinetobacter radioresistens SH164] gi|262298795|gb|EEY86708.1| WspR [Acinetobacter radioresistens SH164] Length = 419 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 10/172 (5%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNF 146 +I + + LS+ D L+ + N F +L S+ + LS++F D+D+FK ND + Sbjct: 237 YIHASELLHLSQHDELTQISNRRNFDETLDSFYRQSRKEGTPLSLLFIDVDFFKNYNDFY 296 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH +GDKVI ++ + FV R GGEEF + A +A+++ + IE Sbjct: 297 GHQMGDKVIYSIARAIKNSIRHRDFVARYGGEEFVVLLPETEAHGAYAVASNIYREIERL 356 Query: 207 QI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 I + S + +IT+S GI + ++ ++ ADQALY AK+ GRN++ Sbjct: 357 AIPHERSCIASYITVSLGITIYRGEAAVTQEALLESADQALYRAKQLGRNQI 408 >gi|170025853|ref|YP_001722358.1| diguanylate cyclase [Yersinia pseudotuberculosis YPIII] gi|169752387|gb|ACA69905.1| diguanylate cyclase [Yersinia pseudotuberculosis YPIII] Length = 378 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 21/247 (8%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85 F+IF + I +++ FL + T + IL++ N+ +I +I + L+ L ++ Sbjct: 124 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 183 Query: 86 ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135 + ++ L + S LS ID L+ L N S L + + ++ D Sbjct: 184 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 243 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK NDN+GH +GD+ + +S + + V R GGEEF SE+ A+ L Sbjct: 244 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 303 Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A +R+ + I + S +T+SAGI+ ++ + AD+ALY AK++GRN Sbjct: 304 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 362 Query: 254 RVVCFSD 260 + D Sbjct: 363 NIEFAKD 369 >gi|332993947|gb|AEF04002.1| response regulator receiver modulated diguanylate cyclase [Alteromonas sp. SN2] Length = 669 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 7/164 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-YNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAF 157 +Q S ID L+G L A + + K++ +V D+D+FKQ+ND +GH VGD+V+ Sbjct: 499 AQASEIDELTGALFRRAMFKEIAKPMSNKIASCLVLIDLDHFKQVNDRYGHVVGDEVLTK 558 Query: 158 LSDQLVV--VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 Q+V + T F R GGEEF ++E+ A L D++K +E+++ ++ + Sbjct: 559 FG-QVVRQRIRKTDKFC-RYGGEEFLLYLHDTTEENANALLEDIKKSLESNKNWSATEST 616 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + SAG+ + + I+ II D LY AK +GR ++ S Sbjct: 617 FSASFSAGVIQVKGERNINKIIKACDNLLYRAKSTGRGKIETMS 660 >gi|330501418|ref|YP_004378287.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328915704|gb|AEB56535.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 601 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 22/172 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+S+L+ D L+GL N +A L +E L+++ D+D FK IND GH Sbjct: 431 QRLSELALQDPLTGLANRTALQQHLDQALARSLRRDELLAVMLIDLDGFKPINDQHGHRF 490 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN------DLRKII 203 GD+V+A ++ +L RLGG+EF S ++A LA D + Sbjct: 491 GDQVLAEIAGRLRQYIRDADLPARLGGDEFVVICENVQSAEDAQDLAKRLLEGLDTPMYL 550 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E+ + + G SI I ++ G + +T+I AD A+Y AK GRNRV Sbjct: 551 EDRAVRV--GASIGIALTRG------GDDATTLIRLADAAMYRAKAEGRNRV 594 >gi|229089690|ref|ZP_04220951.1| Sensory box/GGDEF [Bacillus cereus Rock3-42] gi|228693589|gb|EEL47291.1| Sensory box/GGDEF [Bacillus cereus Rock3-42] Length = 569 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ + +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|218709773|ref|YP_002417394.1| GGDEF family protein [Vibrio splendidus LGP32] gi|218322792|emb|CAV18969.1| GGDEF family protein [Vibrio splendidus LGP32] Length = 512 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 16/198 (8%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLG 123 + ++ TISLLL YI ++E Y I + L+ D L+ + N AF L Sbjct: 316 IALVGTTISLLLSYIVKLQVQEKVRLYKMIDERTEELRFLANHDSLTEIYNRRAFNKVLD 375 Query: 124 SY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ S++ FD+D FK IND FGHP GD ++ + + V R+GG+EF Sbjct: 376 KAIQGDKPFSLIGFDVDKFKGINDQFGHPAGDALLVHVIQLISGSLKEGDHVFRMGGDEF 435 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINIS-SGPSIHITISAGIAERCHKEPISTIIY 238 + SS E LA L I++ S+ + G + T+S G R KE I ++ Sbjct: 436 ---GIISSVIEHDALARYLECILDTVSESHCEHKGQLLSCTLSIGATIRS-KEDIEELLQ 491 Query: 239 RADQALYVAKKSGRNRVV 256 + D LY++K +GRNRV Sbjct: 492 KTDSMLYLSKSNGRNRVT 509 >gi|190895007|ref|YP_001985300.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190700668|gb|ACE94750.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 587 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 9/175 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNE-KLSIVFFDIDYFKQINDNF 146 KEL S + D L+GLLN +F +S L K++++ D+D+FK+IND F Sbjct: 146 KELERSRTEARFAADHDHLTGLLNRRSFDFALSELARQESVKVALLHIDVDHFKEINDRF 205 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIEN 205 GH VGD V+ +S L+ RLGG+EFA ++ A+L + R++ Sbjct: 206 GHAVGDLVLCHVSKILLEAISAGDVAARLGGDEFAVVITEDECDRTIAVLDHIQRRL--E 263 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S + + I + S G+A + + ++ ++D ALY AK++GRNR FSD Sbjct: 264 SPLPVGDQTLI-VRCSIGVASAMSAD-FARLLSQSDLALYHAKRNGRNRAEIFSD 316 >gi|119945951|ref|YP_943631.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii 37] gi|119864555|gb|ABM04032.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii 37] Length = 338 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 80/165 (48%), Gaps = 10/165 (6%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 S D L+GL N F +S L+ D+D FK ND +GH GD + Sbjct: 172 SETDPLTGLHNRRKFNDIFANNLSIAKRQTRLLNFAIIDVDNFKNYNDTYGHVAGDNALI 231 Query: 157 FLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGP 214 LS L + ++ RLGGEEF E A AN++R+ +E+ I+ I + Sbjct: 232 LLSRFLQKRLLRADDYIFRLGGEEFGLLFYSDDEVSAREFANNIRQGVESLAIDHIQNEN 291 Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 +TIS GI HK + ISTI +AD +Y AK SGRNR++ Sbjct: 292 HELLTISLGIVTIKHKTKSISTIYEQADNLMYRAKNSGRNRILSL 336 >gi|21230751|ref|NP_636668.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769252|ref|YP_244014.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. 8004] gi|188992403|ref|YP_001904413.1| Putative sensor protein [Xanthomonas campestris pv. campestris str. B100] gi|21112346|gb|AAM40592.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574584|gb|AAY49994.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. 8004] gi|167734163|emb|CAP52371.1| Putative sensor protein [Xanthomonas campestris pv. campestris] Length = 578 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 98/213 (46%), Gaps = 18/213 (8%) Query: 48 IFLFYIGLTPFYGLE--YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105 +FL G P LE E LSL + ++ + L SI L YNR Sbjct: 359 LFLSAPGPAPMPRLEIAEAAAEQLSLALSNLRLRESLRR--QSIRDALTGLYNR------ 410 Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 L L+H ++ + LS++ D+D+FKQ ND GH GD ++A + + L+ Sbjct: 411 -RYLEEALSHE--LARCARRDLPLSVLMLDVDHFKQFNDGQGHAGGDLLLAAVGELLLTR 467 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HITISAG 223 R GGEEF + +EA +A +R I + + +S G +T S G Sbjct: 468 LRAEDVACRYGGEEFTVILPETDGEEAMRVAEQIRGHI--AALAVSDGQRALPRVTASIG 525 Query: 224 IAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 +A E S +I +AD ALYVAK+ GRNRV Sbjct: 526 VASFPADGELGSALIQKADAALYVAKRQGRNRV 558 >gi|150391428|ref|YP_001321477.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF] gi|149951290|gb|ABR49818.1| diguanylate cyclase [Alkaliphilus metalliredigens QYMF] Length = 746 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 13/170 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 N++ +LS +D L+G+ N F + Y+ LS++F DID+FK+ ND +GH Sbjct: 573 NKLMKLSELDGLTGIPNRRTFDEYFDFRWTKAQQEYS-PLSLLFIDIDHFKEYNDFYGHI 631 Query: 150 VGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+VI ++ L V FV R GG+EF A + Q A +A +++ I+N +I Sbjct: 632 DGDEVIRQVATALEDAVQREGDFVARYGGDEFVAILPNTGSQGALQVAEVIQQNIQNLRI 691 Query: 209 -NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 + S + +IT S GIA ++ +I +D+ALY AK+ GR+R+ Sbjct: 692 QHKHSQTANYITASIGIASITPNRMLTKEALIKISDEALYKAKEKGRHRI 741 >gi|254428338|ref|ZP_05042045.1| PAS fold family [Alcanivorax sp. DG881] gi|196194507|gb|EDX89466.1| PAS fold family [Alcanivorax sp. DG881] Length = 487 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 18/171 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 ++ ++R D L+GL N + +L E +S+VF D+DYFK ND +GH Sbjct: 317 QELADMARTDPLTGLNNRLVLMENLRQEFRRCERSREPISVVFMDVDYFKHYNDTYGHME 376 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + ++ L V + R GGEEF A ++ Q A +A R + + I Sbjct: 377 GDVALQAVAAALRPVIRDTDVLARYGGEEFVALLPTANVQAAEGVAERCRHAV--AGIAS 434 Query: 211 SSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S P +++S G+A E + ++ ADQALY AK++GRNRV Sbjct: 435 LSAP---VSLSVGVATLLPCGEADEAKDPEALLSAADQALYAAKEAGRNRV 482 >gi|168183066|ref|ZP_02617730.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum Bf] gi|237794497|ref|YP_002862049.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum Ba4 str. 657] gi|182673756|gb|EDT85717.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum Bf] gi|229262531|gb|ACQ53564.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum Ba4 str. 657] Length = 419 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 E I ++ Q++ D L+ L N ++F+ L L+I+F D+D FK++ND Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSRKKQNLLAIMFLDLDKFKEVND 303 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203 NFGH GDK++ ++ ++ + + R GG+EF + E++ LA D+ ++ Sbjct: 304 NFGHCTGDKLLWQVAKRVKKTISSKDLIARFGGDEFTILIRNIAHEKQVEDLARDIIEVF 363 Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I I G ++I S GI+ + H +I +AD+A+Y AKK G N+ + D Sbjct: 364 KEP-ICI-EGIYVNIKTSIGISFFPKDGH--TSQELIKKADKAMYDAKKRGSNKFQIYKD 419 >gi|149204072|ref|ZP_01881040.1| GGDEF domain protein [Roseovarius sp. TM1035] gi|149142514|gb|EDM30559.1| GGDEF domain protein [Roseovarius sp. TM1035] Length = 244 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 6/200 (3%) Query: 65 LVENLSLVIISITISLL---LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121 L+ +L+L+ ++T+ ++ L Y G L+ + D L+G+ + ++ + Sbjct: 28 LLRDLALLPGALTVVMIAAPLAYAMGQRLRANQRHAQALEHALHHDSLTGVRSRASLRAG 87 Query: 122 L-GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + G +++ DID+FK+ ND GH GD + + L V RLGGEEF Sbjct: 88 VPGDTARPCAVIVADIDHFKRFNDCHGHAAGDLALRHFAQLLRENCRAGDLVARLGGEEF 147 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 ++ A AN + + I + + +GP +T S G+A + + + RA Sbjct: 148 VILMPMTNPANALRAANRMARRIRQGPVFLDTGPQT-LTASFGVAALLPGDTLDAGLQRA 206 Query: 241 DQALYVAKKSGRNRVVCFSD 260 D+ALY AK +GR+R C D Sbjct: 207 DRALYRAKGAGRDR-ACLHD 225 >gi|186474171|ref|YP_001861513.1| response regulator receiver modulated diguanylate cyclase [Burkholderia phymatum STM815] gi|184196503|gb|ACC74467.1| response regulator receiver modulated diguanylate cyclase [Burkholderia phymatum STM815] Length = 372 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 11/186 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 ++L + + +L++ D L+GL N L + ++S++ D+D FK N Sbjct: 182 QQLLEANLELRKLTQSDGLTGLSNRRYLDEYLNAEWRRGMRAQSEVSLLMLDVDNFKPYN 241 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD+V+ ++ + G P R GGEEFA G++ +LA +R Sbjct: 242 DTYGHVAGDEVLKQIASTVEGCLGRPGDLAARFGGEEFAVVLPGTAAGGTRLLAEKIRLE 301 Query: 203 IENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +E +I + S ++T+S G A ++T+I AD ALY AK+ G+NRV Sbjct: 302 VEALRIPHAGSSSGNYVTVSVGCATLVPAPDAQMTTLIETADLALYRAKRDGKNRVAAME 361 Query: 260 DIENNT 265 + T Sbjct: 362 GGRSGT 367 >gi|27367337|ref|NP_762864.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6] gi|27358906|gb|AAO07854.1| FOG: GGDEF domain protein [Vibrio vulnificus CMCP6] Length = 607 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 9/164 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ L++ D L+G+LN A I + N+K+ + D+D+FK IND +GH GDKV Sbjct: 433 QQLTVLAQQDSLTGVLNRRALIEAANIQRRVNDKIGVCMMDLDHFKTINDEYGHAAGDKV 492 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIENSQINIS 211 + + GR+GGEEF ++ + ++A +R +++ S + + Sbjct: 493 LKAFCQLVSQEIRQQDLFGRVGGEEFCLVLPDANLAQTLLIAERIRLSAEMVLGSVLEL- 551 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + +T+S G A ++ AD+ALY AK GRN+V Sbjct: 552 -GDDMKVTVSIG-ATLWQCSNFERALFIADKALYRAKHEGRNQV 593 >gi|51244166|ref|YP_064050.1| sensory transduction system regulatory protein [Desulfotalea psychrophila LSv54] gi|50875203|emb|CAG35043.1| probable sensory transduction system regulatory protein [Desulfotalea psychrophila LSv54] Length = 449 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 12/184 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQIND 144 EL + ++ +S D L+G+ N F + + + EK ++++ DIDYFK ND Sbjct: 265 ELTEANQKLEHISLTDGLTGIANRRHFDNLIAKEWSRAIREKTPITLIMIDIDYFKLFND 324 Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GHP GD + ++ L + + FV R GGEEFAA + A ++A +R I Sbjct: 325 LYGHPEGDICLKTVAMALNAEMRRSTDFVARYGGEEFAAILPNTGGPGALVMAEKMRASI 384 Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS- 259 +I + S + ++TIS G K+ S I +AD+ALY AK GRN+ FS Sbjct: 385 AKLEIEHKDSEINNYLTISLGAISVVPKKGSDFSHFIEQADKALYTAKTEGRNQARAFSP 444 Query: 260 DIEN 263 D EN Sbjct: 445 DGEN 448 >gi|332992498|gb|AEF02553.1| diguanylate cyclase [Alteromonas sp. SN2] Length = 339 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 10/169 (5%) Query: 96 SYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 + R+ +++ +D L+GL N +L + +S+V D+D+FK++ND +GH Sbjct: 171 TVKRLQEMASLDPLTGLNNRLLLGSIFDMLCETLPEKQKSVSMVLVDLDHFKKVNDRYGH 230 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD V+ +S + + R GGEEF + +A +A LR +E++ Sbjct: 231 GVGDAVLVDVSRIINSMRRRNDCAFRFGGEEFCLLVPDVTPSQAHSIAERLRHSVEHTL- 289 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 + G +T+S G+A + IY+ AD+ LY AK+ GRN+ V Sbjct: 290 -SAEGFDAKMTVSIGVARWPENGDALSQIYKVADERLYKAKEQGRNQTV 337 >gi|296270516|ref|YP_003653148.1| diguanylate cyclase [Thermobispora bispora DSM 43833] gi|296093303|gb|ADG89255.1| diguanylate cyclase [Thermobispora bispora DSM 43833] Length = 484 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + ++ +R D +GLLN SA+ I + L+++ DID+FK++ND +GH Sbjct: 297 HAQLQAAARTDPKTGLLNASAWQREADTEIVRAQRAGQTLAVILVDIDHFKKVNDTYGHL 356 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ ++ L VGR GGEEF G+ EA +A LR I + Sbjct: 357 VGDQVLIQMAQVLRSQVREYDVVGRFGGEEFVVLLPGADLDEARRVAERLRTQIGRMVVT 416 Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ +T+SAGIA H + + ++ AD ALY AK+ GR+R+ Sbjct: 417 AEQA-TVTVTVSAGIAVLNLHGDDLLDLLAAADLALYRAKELGRDRI 462 >gi|251773123|gb|EES53677.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Leptospirillum ferrodiazotrophum] Length = 1071 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 28/199 (14%) Query: 77 TISLLLGYISGSIL--KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----L 129 T+ LLG I+ I E R+ L+ ID L+ L N +AF+ LG L Sbjct: 517 TLVGLLGGIAQDISFSLEFLDRQERLKVLASIDPLTDLPNRTAFVGELGRLTSSQPDLAL 576 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGS 187 S+ DID FK ND FGH GD+++ ++ ++ + F+ R+GG+EF ++ GS Sbjct: 577 SVGILDIDGFKNWNDAFGHIEGDRLLQSMAREIPGILPKGAFLARMGGDEFGICLSSPGS 636 Query: 188 SEQEAAILANDLRKIIENSQ------INISSGPSIHITISAGIA--ERCHKEPISTIIYR 239 D R++ E SQ + + G ++ +T+S G A K P + ++ R Sbjct: 637 I---------DRRRVEEISQKILDLGLRLDGGHNL-VTVSLGWALFPDDAKTP-AELLAR 685 Query: 240 ADQALYVAKKSGRNRVVCF 258 AD++L+ AK SGRNR F Sbjct: 686 ADESLFAAKSSGRNRSTLF 704 >gi|307150378|ref|YP_003885762.1| diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306980606|gb|ADN12487.1| diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 282 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 12/175 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQ 141 +L EL Y R L+R D L+G+ N F+ L + L++ + D+D FK Sbjct: 103 LLWELKKVYQRERHLARTDGLTGITNRWFFLELLSWEVERFRRHQRPLTLAYLDVDNFKT 162 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND++GH VGD+++ LS L + V RLGG+EFA + + A ++ L Sbjct: 163 VNDSYGHSVGDQLLRSLSHTLKTNIRSVDIVARLGGDEFALLLPETDYRSAQVVVTRL-- 220 Query: 202 IIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 ++ + + S + S G+ E I +I D +Y K SG+NR+ Sbjct: 221 --QDKLLAAMAVKSFPVGFSIGVVTFLSLPESIDEMIELVDHLMYDVKNSGKNRL 273 >gi|186893921|ref|YP_001871033.1| diguanylate cyclase [Yersinia pseudotuberculosis PB1/+] gi|186696947|gb|ACC87576.1| diguanylate cyclase [Yersinia pseudotuberculosis PB1/+] Length = 384 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 21/242 (8%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85 F+IF + I +++ FL + T + IL++ N+ +I +I + L+ L ++ Sbjct: 130 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 189 Query: 86 ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135 + ++ L + S LS ID L+ L N S L + + ++ D Sbjct: 190 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 249 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK NDN+GH +GD+ + +S + + V R GGEEF SE+ A+ L Sbjct: 250 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 309 Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A +R+ + I + S +T+SAGI+ ++ + AD+ALY AK++GRN Sbjct: 310 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 368 Query: 254 RV 255 + Sbjct: 369 NI 370 >gi|156742439|ref|YP_001432568.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM 13941] gi|156233767|gb|ABU58550.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM 13941] Length = 756 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 15/182 (8%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149 + + L+ D L G+ N F S+ E+ L+I+ D+D FKQIND++GHP Sbjct: 552 FAEVQHLAITDPLMGIYNRRYFFSAAAREFERARRHRHTLAILIADLDNFKQINDHYGHP 611 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQI 208 +GD+V+ +S+ + + R GGEE + + LR +++E I Sbjct: 612 IGDQVLQAVSNTFRRELRSIDLLARYGGEEIIVLLPETDCSGVIRVVERLRSRLLE--AI 669 Query: 209 NISSGPSIHITIS--AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD--IENN 264 G +IHIT S A +++R + + T+I AD+AL AK+ G++R+V + D N Sbjct: 670 ATERG-AIHITASFGAAVSQRINAPDVETLIGSADRALLRAKQQGKDRLVIWCDACAANG 728 Query: 265 TC 266 C Sbjct: 729 VC 730 >gi|320333964|ref|YP_004170675.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] gi|319755253|gb|ADV67010.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] Length = 615 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 1/129 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S++ DID+FK+ ND FGH GD + ++D + F V R GGEEF L + Sbjct: 477 VSVLAVDIDHFKRFNDTFGHDGGDATLKAVADAMTAHFRAEDVVCRYGGEEFMVVLLDTP 536 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVA 247 +A A LR+ + + + I++S G+A + ++ +AD ALY A Sbjct: 537 HADALARAEGLRRTVRELHVTHAGASLGTISVSVGVATSERGQVTGHQLVAQADAALYQA 596 Query: 248 KKSGRNRVV 256 K++GR+RVV Sbjct: 597 KRAGRDRVV 605 >gi|309789857|ref|ZP_07684436.1| response regulator receiver modulated diguanylate cyclase [Oscillochloris trichoides DG6] gi|308228161|gb|EFO81810.1| response regulator receiver modulated diguanylate cyclase [Oscillochloris trichoides DG6] Length = 951 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 9/163 (5%) Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 SQ+ R D L+GL NHS ++ +LSIV DID+ K+IN+ +GH GD+ Sbjct: 384 SQMLR-DSLTGLFNHSVTEDLLVREVARAQRKKRQLSIVMLDIDHLKEINETYGHAAGDR 442 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ L+ L +GR GG+EF + A + + +R+ Q + + Sbjct: 443 VLKSLARMLQQRLRISDLIGRFGGDEFVVIMPDTDGAVALRVIDSIRERFVMVQ-HRAGV 501 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++T S G+A ++T+ AD ALY AK GRN++V Sbjct: 502 AEFNVTFSGGVATLQASGDVTTLNESADIALYQAKHHGRNQLV 544 >gi|167623607|ref|YP_001673901.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167353629|gb|ABZ76242.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 613 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 18/203 (8%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 + IISI++ + Y + K L S + + S +D L+GL N F+ L Sbjct: 404 VAIISISLLIKKRYGLENDNKNLQSSNRELYKQSNLDSLTGLYNRRYFLDYLAQQGQLPT 463 Query: 126 --NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--- 180 N ++ + DID+FK++ND +GH VGD+V+ + + + R GGEEF Sbjct: 464 LQNMRMCLAIIDIDHFKRVNDTYGHDVGDEVLVRVGQLIQSNIREDDLLIRWGGEEFILL 523 Query: 181 AAAALGSSEQEAAILAND---LRKIIENSQINISSGPSIHITISAGIAE----RCHKEPI 233 + S Q L+N +R+ + ++ I + +H+T+S G+ + R E Sbjct: 524 LSWPDVSCPQSVRALSNHFERIRQAVADAIIEVQE-QQLHLTVSVGVGQPLDARTLVESW 582 Query: 234 STIIYRADQALYVAKKSGRNRVV 256 ++ AD+ALY+AK+ GRN VV Sbjct: 583 QFVLDCADKALYLAKRQGRNCVV 605 >gi|162419032|ref|YP_001605417.1| diguanylate cyclase [Yersinia pestis Angola] gi|162351847|gb|ABX85795.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis Angola] Length = 384 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 21/242 (8%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85 F+IF + I +++ FL + T + IL++ N+ +I +I + L+ L ++ Sbjct: 130 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 189 Query: 86 ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135 + ++ L + S LS ID L+ L N S L + + ++ D Sbjct: 190 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 249 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK NDN+GH +GD+ + +S + + V R GGEEF SE+ A+ L Sbjct: 250 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 309 Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A +R+ + I + S +T+SAGI+ ++ + AD+ALY AK++GRN Sbjct: 310 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 368 Query: 254 RV 255 + Sbjct: 369 NI 370 >gi|153950730|ref|YP_001402464.1| diguanylate cyclase [Yersinia pseudotuberculosis IP 31758] gi|152962225|gb|ABS49686.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pseudotuberculosis IP 31758] Length = 384 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 21/247 (8%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85 F+IF + I +++ FL + T + IL++ N+ +I +I + L+ L ++ Sbjct: 130 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 189 Query: 86 ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135 + ++ L + S LS ID L+ L N S L + + ++ D Sbjct: 190 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 249 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK NDN+GH +GD+ + +S + + V R GGEEF SE+ A+ L Sbjct: 250 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 309 Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A +R+ + I + S +T+SAGI+ ++ + AD+ALY AK++GRN Sbjct: 310 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 368 Query: 254 RVVCFSD 260 + D Sbjct: 369 NIEFAKD 375 >gi|45443488|ref|NP_995027.1| HmsT protein [Yersinia pestis biovar Microtus str. 91001] gi|229836995|ref|ZP_04457160.1| predicted diguanylate cyclase [Yersinia pestis Pestoides A] gi|45438357|gb|AAS63904.1| HmsT protein [Yersinia pestis biovar Microtus str. 91001] gi|229705938|gb|EEO91947.1| predicted diguanylate cyclase [Yersinia pestis Pestoides A] Length = 390 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 21/247 (8%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85 F+IF + I +++ FL + T + IL++ N+ +I +I + L+ L ++ Sbjct: 136 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 195 Query: 86 ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135 + ++ L + S LS ID L+ L N S L + + ++ D Sbjct: 196 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 255 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK NDN+GH +GD+ + +S + + V R GGEEF SE+ A+ L Sbjct: 256 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 315 Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A +R+ + I + S +T+SAGI+ ++ + AD+ALY AK++GRN Sbjct: 316 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 374 Query: 254 RVVCFSD 260 + D Sbjct: 375 NIEFAKD 381 >gi|42784524|ref|NP_981771.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] gi|42740456|gb|AAS44379.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] Length = 892 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSASDVAVMFLDLDRFKKINDR 512 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 513 LGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL- 571 Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 572 NKPFFI-QGEELSITPSIGIAMYPDYGTDVTALMKNADMAMYRAKANGKNRFVFFS 626 >gi|37677089|ref|NP_937485.1| hypothetical protein VVA1429 [Vibrio vulnificus YJ016] gi|37201634|dbj|BAC97455.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 607 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 9/164 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ L++ D L+G+LN A I + N+K+ + D+D+FK IND +GH GDKV Sbjct: 433 QQLTVLAQQDSLTGVLNRRALIEAANIQRRVNDKIGVCMMDLDHFKTINDEYGHAAGDKV 492 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIENSQINIS 211 + + GR+GGEEF ++ + ++A +R +++ S + + Sbjct: 493 LKAFCQLVSQEIRQQDLFGRVGGEEFCLVLPDANLAQTLLIAERIRLSAEMVLGSVLEL- 551 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + +T+S G A ++ AD+ALY AK GRN+V Sbjct: 552 -GDDMKVTVSIG-ATLWQCSNFERALFIADKALYRAKHEGRNQV 593 >gi|323499816|ref|ZP_08104775.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] gi|323315057|gb|EGA68109.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] Length = 331 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 10/152 (6%) Query: 107 DCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G LN A + +L + + ++ F DID FKQIND +GH VGDKV+A + Sbjct: 183 DSLTGCLNRRALLHRASDALNADHTYIACFFADIDKFKQINDRYGHEVGDKVLASVGHAF 242 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 VF P GR GG+EF A A E I L+ +E + ++ ++I +S Sbjct: 243 KQVFHQPGLCGRYGGDEFVAFAFSEDE----IQLEQLKSQVEQALALLAPVEGLNIRVSI 298 Query: 223 GIAERCHKE--PISTIIYRADQALYVAKKSGR 252 G + R E + +I AD +Y K + R Sbjct: 299 GSSVRKLSELCSLQRLIQLADHQMYQVKHANR 330 >gi|320159182|ref|YP_004191560.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O] gi|319934494|gb|ADV89357.1| GGDEF domain [Vibrio vulnificus MO6-24/O] Length = 607 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 9/164 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +++ L++ D L+G+LN A I + N+K+ + D+D+FK IND +GH GDKV Sbjct: 433 QQLTVLAQQDSLTGVLNRRALIEAANIQRRVNDKIGVCMMDLDHFKTINDEYGHAAGDKV 492 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIENSQINIS 211 + + GR+GGEEF ++ + ++A +R +++ S + + Sbjct: 493 LKAFCQLVSQEIRQQDLFGRVGGEEFCLVLPDANLAQTLLIAERIRLSAEMVLGSVLEL- 551 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + +T+S G A ++ AD+ALY AK GRN+V Sbjct: 552 -GDDMKVTVSIG-ATLWQCSNFERALFIADKALYRAKHEGRNQV 593 >gi|229182956|ref|ZP_04310189.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1] gi|228600580|gb|EEK58167.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1] Length = 569 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ + +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|221633880|ref|YP_002523106.1| developmental regulator MorA [Thermomicrobium roseum DSM 5159] gi|221156526|gb|ACM05653.1| developmental regulator MorA [Thermomicrobium roseum DSM 5159] Length = 897 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 15/168 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFKQINDNFGH 148 R++ L+R D L+G+ N A + +L E+L+ ++ D+D+FK++ND GH Sbjct: 481 RLAYLARHDTLTGIANRHALLETL---QERLARAVRSGRSGALLLLDLDHFKEVNDRLGH 537 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD V+ ++++L+ + V R+GG+EFAA + + A + L +I + Sbjct: 538 AAGDAVLRAVANRLIGTLRSDDLVARVGGDEFAALLHPVTREGAECVGRRLLDVIGQIMV 597 Query: 209 NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255 + I + S GIA H + ++ AD+ALY AK GR+R+ Sbjct: 598 PLPD-RVIRLRASCGIALFPEHGTTVEELLIAADRALYQAKYRGRDRL 644 >gi|170746830|ref|YP_001753090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] gi|170653352|gb|ACB22407.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] Length = 801 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 17/165 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFF-DIDYFKQINDNFGHPVG 151 RI+ L+ D L+GL N S F +LG+ E+ S +F+ D+D FK +ND+ GH VG Sbjct: 346 RIAFLAGHDSLTGLPNRSGFQDALGTLCRAVRTAERPSALFYLDLDGFKAVNDSRGHLVG 405 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LG--SSEQEAAILANDLRKIIENSQ 207 D+++ ++ +L+ + G P + RLGG+EFA LG ++E AA + +LR+ + + Sbjct: 406 DRLLRAVTARLLAI-GEPHSLFRLGGDEFAMVVRDLGRPAAEALAARVVAELRRPFQIDE 464 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 + G S+ I A EP S ++ RAD ALY AK G+ Sbjct: 465 ARLEVGVSVGIAYMPDDA----VEPAS-LLMRADLALYAAKADGK 504 >gi|157736733|ref|YP_001489416.1| GGDEF domain-containing protein [Arcobacter butzleri RM4018] gi|157698587|gb|ABV66747.1| GGDEF domain protein [Arcobacter butzleri RM4018] Length = 619 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 9/162 (5%) Query: 106 IDCLSGLLNH---SAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+GL N FI + K +I+F DIDYFK IND +GH GD ++ L Sbjct: 447 VDGLTGLYNRRYLDEFIEKKLPHESQDGSKFAIMFLDIDYFKMINDTYGHDAGDAILQKL 506 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 SD + F+ R GGEEF +E A LA + + N +G + Sbjct: 507 SDTMKASISENEFIVRFGGEEFLIIMKNPTESSARELATKINQEFAKLVFNY-NGQAFSK 565 Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 T+S G + + I I AD +LY AK++GRN++V F Sbjct: 566 TVSIGYSFFPDDADQIWKCIKYADISLYEAKETGRNKIVRFQ 607 >gi|145600462|ref|YP_001164538.1| HmsT protein [Yersinia pestis Pestoides F] gi|145212158|gb|ABP41565.1| HmsT protein [Yersinia pestis Pestoides F] Length = 390 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 21/247 (8%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85 F+IF + I +++ FL + T + IL++ N+ +I +I + L+ L ++ Sbjct: 136 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 195 Query: 86 ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135 + ++ L + S LS ID L+ L N S L + + ++ D Sbjct: 196 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 255 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK NDN+GH +GD+ + +S + + V R GGEEF SE+ A+ L Sbjct: 256 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 315 Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A +R+ + I + S +T+SAGI+ ++ + AD+ALY AK++GRN Sbjct: 316 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 374 Query: 254 RVVCFSD 260 + D Sbjct: 375 NIEFAKD 381 >gi|83590315|ref|YP_430324.1| diguanylate cyclase [Moorella thermoacetica ATCC 39073] gi|83573229|gb|ABC19781.1| diguanylate cyclase (GGDEF domain) [Moorella thermoacetica ATCC 39073] Length = 439 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 9/168 (5%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID +GL N+ I+ Y +I DID FK ND GH GDK + + Sbjct: 264 IDAKTGLYNYQHMMHLLEKEIARARRYQRTFTIAMLDIDDFKIYNDTHGHHQGDKALQKI 323 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217 + + R GGEEF +S EA+++A +R+ I N+ I N+ GP Sbjct: 324 AALIKANIREVDIAARYGGEEFVIIMPETSALEASVVAERVRRAIMNAGIANVGCGPDRL 383 Query: 218 ITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDIENN 264 +T+S G+ H + +I AD ALY AK+ G+N V +S + Sbjct: 384 LTVSIGLGTYPHDATTAGKLIDAADSALYEAKRWGKNVVRVYSKTDRR 431 >gi|87119537|ref|ZP_01075434.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121] gi|86165013|gb|EAQ66281.1| diguanylate cyclase (GGDEF domain) [Marinomonas sp. MED121] Length = 368 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 12/163 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD---KVIAFL 158 +++ +D L+ L A L ++ I D+D+FK+ ND +GH +GD K +A+ Sbjct: 208 KMAYVDELTQLPGRRALNERLLGLSKNYVIAMLDVDHFKKFNDTYGHDMGDLVLKSVAYN 267 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-----SSG 213 D+ V G F R GGEEFA + E +R+ IE ++ + + Sbjct: 268 MDK--VASGGKAF--RYGGEEFAVVFANRKKDEVLSALEQVRESIEAEKVAVYECKKEAY 323 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +TIS G A + +I +ADQ LY AKK GRN VV Sbjct: 324 KDVSVTISIGAALSNSERDAQEVIKQADQLLYKAKKKGRNCVV 366 >gi|152965578|ref|YP_001361362.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans SRS30216] gi|151360095|gb|ABS03098.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans SRS30216] Length = 537 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ L N F L ++ ++++ D+D FK +ND GH VGD V+ +S + Sbjct: 97 DPLTDLGNRQLFTDRLQHALARRGSKACAVLYLDLDGFKTVNDTHGHGVGDTVLVEVSHR 156 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L V R GG+EFA S E A+ +A+ + I N I G + IT Sbjct: 157 LRAAVRPEDTVARFGGDEFAVLCEDLSDELNASRIADRVVSSIANHPIEFGDGRKLTITP 216 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S GIA + S ++ RAD ALY AK+SG+ R F + Sbjct: 217 SVGIALARDEADASKLLRRADAALYRAKESGKARSELFDE 256 >gi|323438902|gb|EGA96637.1| GGDEF domain-containing protein [Staphylococcus aureus O11] Length = 327 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 NR + D L+GL N F L + K ++++ DID FK +ND + H Sbjct: 153 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 212 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + R GGEEF+ S ++ LA ++R +E S ++ Sbjct: 213 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 272 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 + I +++S G+ +P S + AD ++VAK GRN+V+ Sbjct: 273 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 320 >gi|322807681|emb|CBZ05256.1| phytochrome-like protein; Cph2 [Clostridium botulinum H04402 065] Length = 437 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 12/173 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQIND 144 E + + N+I +LS I L+ LN +F+ L N++ +SIVF D+DYFK+ ND Sbjct: 256 ENYSANNKIKKLS-ICSLTYALNRGSFMEKLKDEFDDSKKNKRHISIVFIDVDYFKEYND 314 Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 N+GH GDKV+ + ++ V VGR GG+EF E +A ++ K I Sbjct: 315 NYGHIEGDKVLMKIGKSIINVAKKYSGVVGRYGGDEFIVLLNEVKTSELEFIAVEISKEI 374 Query: 204 ENSQINIS-SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +I S S + T+S G+A K E I +I AD+ALY K++GR+ Sbjct: 375 NKLKIKREYSHISKYQTVSIGVASIIPKEEEKIEDLINYADKALYKCKENGRD 427 >gi|269962919|ref|ZP_06177257.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832281|gb|EEZ86402.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 115 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 66/111 (59%), Gaps = 3/111 (2%) Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K+IND +GH VGD+VI+ ++D + VF ++ R GG+EF A SE ++ +LA L Sbjct: 6 KRINDKYGHHVGDEVISIIADAMKKVFRATDYLIRTGGDEFIAILPDCSESKSLMLAKKL 65 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 R +++ +++ I +++S GIA E ++ +I RAD+ LY K+ Sbjct: 66 RSVVKENRLK---SLDIDVSVSTGIAMSTEHETLNDVIMRADEDLYECKRK 113 >gi|172038628|ref|YP_001805129.1| hypothetical protein cce_3715 [Cyanothece sp. ATCC 51142] gi|171700082|gb|ACB53063.1| unknown [Cyanothece sp. ATCC 51142] Length = 607 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N I+ Y ++ I+ DID+FKQINDN+ H +GD V+ Sbjct: 445 DSLTGLFNRRYLYEFLKKEIAKAQRYETEIGIILLDIDHFKQINDNYSHGLGDVVLEEFG 504 Query: 160 DQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAAILANDLRKI-IENSQINISSGP 214 + L R GGEE F A+L ++ Q A L ++++ Q +++S Sbjct: 505 EFLRDNIRESDIACRYGGEEFILIFPHASLDNTYQRAEALRRKIKRLHFRYQQHHLNS-- 562 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T+S G+A H +++ AD ALY AK GRNR + + + Sbjct: 563 ---VTVSVGVANYPQHGLTGEEVVHHADLALYAAKDQGRNRTIVYGE 606 >gi|46202942|ref|ZP_00052341.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 156 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 67/135 (49%), Gaps = 9/135 (6%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS+ F D+D FK IND +GH GD + S L V + R GGEEF A + Sbjct: 16 LSLAFVDLDNFKSINDKYGHEEGDNALRIASTSLRKVLRRGDILIRWGGEEFIAVMPNTD 75 Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK--EPISTIIYRADQALY 245 AAI LR + P + +T S G+AER E + ++ RADQ +Y Sbjct: 76 PPGAAIAIARLR------SAGLGMRPDGLPLTASVGVAERITDGIETWNELVERADQRMY 129 Query: 246 VAKKSGRNRVVCFSD 260 AK+SG+NRV+ D Sbjct: 130 AAKQSGKNRVIGCGD 144 >gi|317486914|ref|ZP_07945724.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921789|gb|EFV43065.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 874 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 16/213 (7%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFIS-----YNRISQL---SRIDCLSGL 112 LEY + + + +S +I+LL SG +L +++ R ++L S D L+ L Sbjct: 660 LEYRTLRGDTFIWVSASINLLKDPASGDLLAFGYLTDITERRQREAELVYKSERDFLTKL 719 Query: 113 LNHSAFISSLGSYNEKLS----IVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N SA Y S + FF D+D FK +ND GH GD ++ ++ +L F Sbjct: 720 YNRSAVEKRFSEYAASASGDGLLAFFSMDLDGFKNVNDTLGHLEGDTLLQLVARELESCF 779 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIA 225 VGRLGG+EF A G S +E A +L I + ++ + ++I IA Sbjct: 780 RVDDIVGRLGGDEFIALMYGVSTREIIERKAEELCARIRSIRMAHPRYSGVSVSIGVAIA 839 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 H + + +AD ALY AK+ GR+R V + Sbjct: 840 PE-HGDSFEELYAKADVALYHAKQGGRDRFVIY 871 >gi|290513224|ref|ZP_06552585.1| diguanylate cyclase [Klebsiella sp. 1_1_55] gi|289774321|gb|EFD82328.1| diguanylate cyclase [Klebsiella sp. 1_1_55] Length = 510 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 18/160 (11%) Query: 106 IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 ID L+G N AF I++L + ++ ++ DID FK IND +GH GD V+ ++ + Sbjct: 358 IDALTGCKNRRAFDSDIAALMNDHQPFALALVDIDNFKSINDTWGHLNGDIVLRNVAREG 417 Query: 163 VVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP----SI 216 + V P+ + R GGEEFA A ++ R ++E ++N+ + Sbjct: 418 LQVL-QPLEISLYRYGGEEFAVVF-------PAEHIDNARTLLETWRVNVERRTWREDGL 469 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T SAG+ E + EP+ ++ D+ALY AK+ G+NR++ Sbjct: 470 TVTFSAGLGE-WNMEPLDKLVVSVDEALYKAKQQGKNRIL 508 >gi|206968481|ref|ZP_03229437.1| sensory box/GGDEF family protein [Bacillus cereus AH1134] gi|206737401|gb|EDZ54548.1| sensory box/GGDEF family protein [Bacillus cereus AH1134] Length = 567 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ + LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDDMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 252 -FILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|254422258|ref|ZP_05035976.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196189747|gb|EDX84711.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 547 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 22/174 (12%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QL+++D L+ + N +F S++ S LS++ DIDYFK+ ND +GH GD Sbjct: 374 LEQLAKMDGLTQVANRRSFDKYMERVWSNVDSTQSSLSLILCDIDYFKRFNDTYGHQAGD 433 Query: 153 ---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 + +A +Q V V R GGEEFA ++ A +A D+ + + Q+N Sbjct: 434 LCLRQVAKAIEQ--AVKRNTDLVARYGGEEFAVVLPDTNVSGAKRVAEDICETVR--QLN 489 Query: 210 I---SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I +S S +T+S GIA K + ++ ADQ LY AK SGR+ CF Sbjct: 490 IMHSASEVSDRVTLSLGIASISSPQKIELDQLVAAADQGLYDAKSSGRD---CF 540 >gi|148975502|ref|ZP_01812373.1| PAS:GGDEF [Vibrionales bacterium SWAT-3] gi|145964930|gb|EDK30181.1| PAS:GGDEF [Vibrionales bacterium SWAT-3] Length = 822 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N I +N +++ DID FK IND+ GH GD ++ Sbjct: 389 LAHHDPLTGLANRLLATKKLDEEIKRSREHNSFFLLLYLDIDEFKTINDSLGHGQGDNLL 448 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAA----ALGSSEQEAAILANDLRKIIENSQINIS 211 +S+ L + G FV R+GG+EF +L EQ A L LRK + Sbjct: 449 INVSNILTTLVGNNGFVARMGGDEFMVVFSDISLSEGEQLADRLNQSLRKPY------YA 502 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 SI + S G+ E H T+I AD A+Y AK++GR++ ++D Sbjct: 503 DNNSIFVAASIGVCEYPTHGSSGETLIRNADTAMYHAKRNGRDQYRVYAD 552 >gi|78777534|ref|YP_393849.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78498074|gb|ABB44614.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM 1251] Length = 439 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 78/174 (44%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + + +L D L+G+ N + Y S++ DID FK +N Sbjct: 267 EELSEAKKELERLYITDQLTGVYNRVKIDEIIDIELKKQKRYGYVCSVIMIDIDLFKLVN 326 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD + S L VGR GGEEF + + + A LAN LR I Sbjct: 327 DTYGHLAGDLTLKEFSALLKSNVRDTDNVGRWGGEEFIIVSPQTDQDGALSLANHLRSKI 386 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 E T S G+A + I ++I AD+ALY AK SGRN+VV Sbjct: 387 EEFTFTTVGKK----TASFGVASCSEDDDIQSLIDNADKALYRAKNSGRNKVVT 436 >gi|72383851|ref|YP_293205.1| PAS:GGDEF [Ralstonia eutropha JMP134] gi|72123194|gb|AAZ65348.1| PAS:GGDEF [Ralstonia eutropha JMP134] Length = 671 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 20/175 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+GLLN F L S ++ ++++ DID FK +ND +GHPVGD Sbjct: 488 LEQTTMSDYLTGLLNRKGFDRRLESAMVQSEEGSKIMALLLVDIDNFKLVNDTYGHPVGD 547 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA------AILANDLRKIIENS 206 K++ ++ +L G V R+GG+EFA +A AIL+ I N Sbjct: 548 KLLNVVATRLKSCAGETCAVARVGGDEFAVILEDVLTSDAVLRVARAILSATCETFILNG 607 Query: 207 -QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 QI S+ ++ A + C + ++ +AD ALY AK SG+ R + F + Sbjct: 608 YQIACST------SVGAALKNPCDNNTRNELLLKADTALYSAKHSGKARFILFGE 656 >gi|117921325|ref|YP_870517.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117613657|gb|ABK49111.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 518 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + + L I DID+FK IND+FGH GDK Sbjct: 354 QKLNLLDSLTQLPNRAALEERMELEYRNYQRHRTPLWIAVADIDHFKSINDSFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF + A L N +R+ ++N + Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLILPEIDGGDIAQLLNRVREKVKNIPFKFKN- 472 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A+ E I RAD ALY AK R+RVV Sbjct: 473 QRITVTVSIGAAQVMGNELIHETFERADAALYKAKHESRDRVV 515 >gi|330807611|ref|YP_004352073.1| diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375719|gb|AEA67069.1| putative diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 361 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 17/165 (10%) Query: 104 SRIDCLSGLLNH----SAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+ L N +LG Y +K++I F D+D FK +ND++GH GD+V+ Sbjct: 189 ARYDALTQLPNRLLLAERMRQALGKARIYQQKVAIAFIDLDGFKALNDSYGHDWGDRVLQ 248 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLRKIIENSQINISSGP 214 ++ ++ + RLGG+EF A +G + E +L L N+ I I + Sbjct: 249 IVAARINATLREGDTLARLGGDEFVAGLVGLQAVEDSEPLLKRML--AAANAPILIGA-Q 305 Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ I S G+A E H+ I +I +ADQA+Y++KK+G NR+ Sbjct: 306 TVEIAASIGVAFYPEHGHE--IDGLISKADQAMYLSKKAGGNRLA 348 >gi|311696943|gb|ADP99816.1| response regulator [marine bacterium HP15] Length = 317 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 9/157 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N AF + L+I+ FD+D+FK+INDN GH GD+V+ + Sbjct: 158 DDLTGLHNRRAFFELGNQLLKQTRRNGSPLAIIMFDLDHFKKINDNHGHDAGDEVLRHVG 217 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L+ R+GGEEFA + +A+ LA L ++ + + I T Sbjct: 218 RVLMSNVREADIAARIGGEEFAILLGDAHAAQASELAERLLGVMHETPVRYHD-VRIRPT 276 Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 S GI+ EP + ++ RAD A+Y +K GR RV Sbjct: 277 ASFGISSLHPDEPNLENLMARADSAMYESKALGRGRV 313 >gi|296102115|ref|YP_003612261.1| RNase II stability modulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056574|gb|ADF61312.1| RNase II stability modulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 663 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 18/185 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 SG+ + E + R+ L+ D ++GL N +A I S G ++ +V+ D+D Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAIHELISDAIDSRGET--QVGVVYLDLDN 276 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL----GSSEQEAAI 194 FK++ND +GH GD+++ ++ ++ + RLGG+EF A GS E A+ Sbjct: 277 FKKVNDAYGHMFGDQLLQAVALAILSCLEEGQVLARLGGDEFIVMATNTSQGSLEAMASR 336 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + LR+ I I +G S+ I ++ H ++I AD A+Y AK++GR + Sbjct: 337 ILTRLRQPFRIGLIEIYTGCSLGIALAPQ-----HGNDRESVIRNADTAMYTAKENGRGK 391 Query: 255 VVCFS 259 FS Sbjct: 392 FCVFS 396 >gi|239994880|ref|ZP_04715404.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126] Length = 519 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 107/200 (53%), Gaps = 28/200 (14%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSR--IDCLSGLLNHSAF----ISSLGSY 125 +I+ ITI + I+ S K + +R+S R D L +LN S + S L ++ Sbjct: 324 LIVGITIEAFIFAIATS-RKVKKLDDDRLSAFKRASTDSLCKVLNRSGWEGIAQSLLTNF 382 Query: 126 NEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 N++ L+++F D+D FK+IND +GH GDKV+ ++ L+ VGRLGG+EF Sbjct: 383 NKEGGYLTLLFIDVDNFKEINDQYGHHCGDKVLQVIAKILLSRCRDQDAVGRLGGDEFVV 442 Query: 183 AAL----GSSEQ-----EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 + G SE+ EA++L D+R +N I++++ +IT ERC + + Sbjct: 443 LSHCYSEGQSERLAARIEASLLERDIRT--DNVVISVTASVGTYIT-----NERC--KDL 493 Query: 234 STIIYRADQALYVAKKSGRN 253 +T++ +AD+ +Y K+ + Sbjct: 494 TTLLNKADKLMYSVKEKHKT 513 >gi|77360630|ref|YP_340205.1| hypothetical protein PSHAa1689 [Pseudoalteromonas haloplanktis TAC125] gi|76875541|emb|CAI86762.1| conserved protein of unknown function [Pseudoalteromonas haloplanktis TAC125] Length = 423 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S+++ +D L+ + N F S + N +LS++ DID FK+ ND GH GD Sbjct: 252 LSEMAFLDSLTKIANRRRFDEKIVDEFSRVKLANCQLSLIIIDIDNFKKFNDRHGHIAGD 311 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 K + ++ +L P FV R GGEEF + +Q A +A ++K IE I Sbjct: 312 KCLYAVAQKLADTVSRPEDFVARYGGEEFVVLLPQTDKQGALFVAEQIQKAIEMLAIVHE 371 Query: 212 SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253 + ++++S GI H + T I AD ALY AK GRN Sbjct: 372 DSFTGYLSVSMGINTVNHHQCDDHLTFIQAADDALYYAKNQGRN 415 >gi|330960553|gb|EGH60813.1| GGDEF domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 123 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 1/124 (0%) Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK++ND++GH GD+V+ ++ L V R GGEEF +S A ++ Sbjct: 1 IDHFKRVNDDYGHYTGDEVLKTVAHGLKAQLRNIDRVFRYGGEEFVVILSNTSADAAQMV 60 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 LR+ + + + P++ +T+S G + E +++ RAD ALYVAK+ GRNR+ Sbjct: 61 GERLRRAVRSLEFR-ELDPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKRQGRNRL 119 Query: 256 VCFS 259 S Sbjct: 120 AMAS 123 >gi|323705879|ref|ZP_08117451.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Thermoanaerobacterium xylanolyticum LX-11] gi|323534875|gb|EGB24654.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Thermoanaerobacterium xylanolyticum LX-11] Length = 666 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 4/124 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 S++ FD+D+FK +ND FGH GD V+ ++D + + R GGEEF +S Sbjct: 542 SLIMFDLDHFKNVNDRFGHAAGDTVLKGVADMVKGRIRKTDYFARWGGEEFIILLPETSL 601 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 A LA ++R I + G ++T S G+ E + I T++ R D LY AK Sbjct: 602 NNATNLAEEIRMQIS----TVKFGDVGNVTASFGVTEYRENDTIDTVLLRVDNMLYEAKN 657 Query: 250 SGRN 253 +GRN Sbjct: 658 NGRN 661 >gi|300930118|ref|ZP_07145542.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] gi|300461979|gb|EFK25472.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1] Length = 452 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHPVGD+VI + + Sbjct: 285 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVGDQVIKTVVNI 344 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + + +GGEEF + A LA +R+ +E + N +TI Sbjct: 345 IGKSIRPDDLLAHVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 404 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 405 SIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVV 441 >gi|257484328|ref|ZP_05638369.1| GGDEF [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 510 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 104/237 (43%), Gaps = 24/237 (10%) Query: 36 SIFIATVI--FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93 SIF+ + F F Y P Y ++ E V+ S +LL + +LK L Sbjct: 1 SIFLVAIAWEFKLESFAMYAMNLP-YDQDFEDAERWRFVLTSTGFALLSMVVPFILLKRL 59 Query: 94 FI----SYNRI-------SQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFDIDY 138 SYN + L+R D LSGLLN F ++ L + + ++ D+D Sbjct: 60 MQRLQDSYNDLLKSQALSDSLARHDPLSGLLNRRVFQEQLVARLEQASSQTAVFLIDLDK 119 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILA 196 FK IND GH VGD I +++ L G V RLGG+EF A G Q E A LA Sbjct: 120 FKLINDTHGHAVGDAAICAVAESLREATAGWQASVARLGGDEFGLAVSGDFTQVELATLA 179 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252 + I S ++ P + ++ + GIA T++ AD A+Y K GR Sbjct: 180 ESVLAKIAASSADL---PRLALSATLGIAISPLDGSDADTLLQHADSAMYRGKNGGR 233 >gi|224825540|ref|ZP_03698645.1| diguanylate cyclase [Lutiella nitroferrum 2002] gi|224602461|gb|EEG08639.1| diguanylate cyclase [Lutiella nitroferrum 2002] Length = 461 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 15/190 (7%) Query: 80 LLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKL 129 ++LG + +LK L SY + + S D L+GL + F + L + L Sbjct: 263 IMLGALLFEVLKLQTRLQHSYRQAYEASIHDSLTGLSSRRHFDAVLKMALQQQARHQAPL 322 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DID+FKQ ND+FGH GD+ I ++ + V R GGEEF A Sbjct: 323 TLLMADIDFFKQYNDHFGHVEGDRCIQRIAACMAEQLRGGDTVARYGGEEFVAILQYCDL 382 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPIST--IIYRADQALY 245 +A A R +E+ + G S+ ++ + CH P + ++ +AD++LY Sbjct: 383 VQARQAAERFRAAVESLALPTPPG-SLRPVVTVSVGLYCHPANRPATAGWLVEQADRSLY 441 Query: 246 VAKKSGRNRV 255 AK++GRNR+ Sbjct: 442 AAKRAGRNRI 451 >gi|196041809|ref|ZP_03109098.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] gi|196027303|gb|EDX65921.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] Length = 567 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ + +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|157164461|ref|YP_001467733.1| GGDEF domain-containing protein [Campylobacter concisus 13826] gi|112800344|gb|EAT97688.1| diguanylate cyclase [Campylobacter concisus 13826] Length = 364 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 11/180 (6%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---------GSYNEKLSIVFFD 135 I+ S K++ I ++S+ D L+GLLN + +L S + L ++ D Sbjct: 173 ITSSGYKQISEEKEEIERISKYDFLTGLLNRRSIERTLRYELKELREKSSDANLVVMLGD 232 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID FK+IND +GH GDKV+ ++ L F + R GGEEF ++ + Sbjct: 233 IDNFKKINDTYGHDWGDKVLKEIARALQDTFRENDHICRWGGEEFLVILPEVKTEDVKKV 292 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 L I +Q+ + S+ +T + I T+I +AD+ LY KK+G++R+ Sbjct: 293 ETRLGTRI--AQVKLPDKSSVTMTFGLVLCANGVITDIDTVINKADKKLYEGKKNGKDRI 350 >gi|330973494|gb|EGH73560.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 630 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 21/210 (10%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115 +G +L ++ + ++ T LL+ LK + +I L+ D L+GL N Sbjct: 245 HGAPLVLDISVEFITLNNTACLLMNARDIGALKN---AQAQIQHLAYHDPLTGLPNRALL 301 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L Sbjct: 302 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361 Query: 172 VGRLGGEEFA------AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 V RLGG+EF + G ++ LA++LR ++ ++ G + +T S G+ Sbjct: 362 VARLGGDEFVVLICGLEGSQGEVTRQVRELADNLRNLL--AEPMFLDGHRLQVTPSIGVV 419 Query: 226 --ERCHKEPISTIIYRADQALYVAKKSGRN 253 P + ++ RAD ALY AK GRN Sbjct: 420 LIPDDGLTP-ADLLKRADIALYRAKDCGRN 448 >gi|307946218|ref|ZP_07661553.1| signaling protein [Roseibium sp. TrichSKD4] gi|307769882|gb|EFO29108.1| signaling protein [Roseibium sp. TrichSKD4] Length = 397 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 14/181 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFK 140 S + ++L + ++ +++ D L+GL N AF L + +++ D+D FK Sbjct: 210 SMKLARKLHETNRKVREVAETDFLTGLYNRRAFSEHLEKLQADDQTSEFNLLLLDLDGFK 269 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND GH GD V+ + +L + + + RLGG+EFA G + I A Sbjct: 270 PINDRLGHVAGDLVLKEIGKRLKSLADASL-IARLGGDEFALVVDGPQD----IAAELAE 324 Query: 201 KIIENSQINIS-SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 K+IE I G ++ IT S GI ++R +S +++ AD ALY AK GR R C Sbjct: 325 KVIEVISARIDYEGATVSITGSIGITTSDRGQYRTMSDLMHEADLALYEAKGRGR-RQSC 383 Query: 258 F 258 F Sbjct: 384 F 384 >gi|260463353|ref|ZP_05811554.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] gi|259030943|gb|EEW32218.1| diguanylate cyclase [Mesorhizobium opportunistum WSM2075] Length = 260 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 26/233 (11%) Query: 40 ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-------KE 92 T FIA F P+ E + L+ + + L+LG GS L ++ Sbjct: 20 GTAFFIAVAFFVDSFNFPYLSTEAVWRAQLT----DLMLPLVLG---GSFLFFLMWKIRQ 72 Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQIN 143 L I+ +S ++ D L+ +LN AF + +Y E+ +++ D D+FK IN Sbjct: 73 LAIAQRDLSVIAATDSLTAVLNRGAFSMLVEAYLEQTRKQELTRSGALLIIDADHFKSIN 132 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+ + ++ + VGR+GGEEF G ++ ++A +R+ I Sbjct: 133 DRLGHDCGDQALKLIAQTIKAQLRGSDIVGRIGGEEFGVFLPGVDPSQSWLVAESIRRRI 192 Query: 204 ENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S+++ S G S +++S G I AD+ LY AK +GR++V Sbjct: 193 --SEMDFSPGGRSCPLSVSIGGTSFNGPTTYEAIFSAADRRLYAAKSNGRDQV 243 >gi|254520960|ref|ZP_05133015.1| diguanylate cyclase [Stenotrophomonas sp. SKA14] gi|219718551|gb|EED37076.1| diguanylate cyclase [Stenotrophomonas sp. SKA14] Length = 447 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 21/169 (12%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL AF +L SI D+D+FK ND GH GD V+ ++ +L V Sbjct: 266 DELTGLPGRRAFNETLQRARGTYSIAMVDVDHFKSFNDTHGHDTGDDVLRLVASRLSRV- 324 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---------------- 210 G R GGEEFA L LR+ IE++++ + Sbjct: 325 GDGGRAFRYGGEEFAVVFLDRPAAACVDAVEALRQSIEDTRMQLRDRSTRSRDDDTGRQQ 384 Query: 211 ----SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 SG + +T+S G+A+ + +I AD ALY AK GRN+V Sbjct: 385 RGRGGSGQVVQVTVSIGLADSRENPRPAAVIKAADLALYRAKDGGRNQV 433 >gi|206578350|ref|YP_002241071.1| diguanylate cyclase [Klebsiella pneumoniae 342] gi|288937716|ref|YP_003441775.1| diguanylate cyclase [Klebsiella variicola At-22] gi|206567408|gb|ACI09184.1| diguanylate cyclase [Klebsiella pneumoniae 342] gi|288892425|gb|ADC60743.1| diguanylate cyclase [Klebsiella variicola At-22] Length = 510 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 18/160 (11%) Query: 106 IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 ID L+G N AF I++L + ++ ++ DID FK IND +GH GD V+ ++ + Sbjct: 358 IDALTGCKNRRAFDSDIAALMNDHQPFALALVDIDNFKSINDTWGHLNGDIVLRNVAREG 417 Query: 163 VVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP----SI 216 + V P+ + R GGEEFA A ++ R ++E ++N+ + Sbjct: 418 LQVL-QPLEISLYRYGGEEFAVVF-------PAEHIDNARTLLETWRVNVERRTWREDGL 469 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T SAG+ E + EP+ ++ D+ALY AK+ G+NR++ Sbjct: 470 TVTFSAGLGE-WNMEPLDKLVVSVDEALYKAKQQGKNRIL 508 >gi|209883478|ref|YP_002287335.1| diguanylate cyclase [Oligotropha carboxidovorans OM5] gi|209871674|gb|ACI91470.1| diguanylate cyclase [Oligotropha carboxidovorans OM5] Length = 317 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 11/163 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + ID L+GL N AF L + E L + F DID+FK++ND GH GD+V+ Sbjct: 151 AEIDYLTGLPNRRAFEVLLDRHYGEARAAAESLILAFCDIDHFKRVNDIHGHEAGDRVLK 210 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQINISSG-P 214 ++ L V R GGEEF S EA +D+RK + E IN ++ P Sbjct: 211 AIAAALSKTTDNNCHVARYGGEEFVMLFRNISTNEARKRFDDVRKELAEQRFINRATDRP 270 Query: 215 SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVV 256 IT+S G+A + +P + AD AL++AK+ GRN++V Sbjct: 271 VGQITLSGGMANVFAYSDPREALKA-ADDALFLAKERGRNQIV 312 >gi|171059397|ref|YP_001791746.1| diguanylate cyclase [Leptothrix cholodnii SP-6] gi|170776842|gb|ACB34981.1| diguanylate cyclase [Leptothrix cholodnii SP-6] Length = 636 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 102 QLSRIDCLSGLLN-HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 QL++I GLL A + + + L+I DID FK++ND+ GH GD+ + FL+ Sbjct: 480 QLTQIANRRGLLRCFDAERARVERESADLAIGLLDIDNFKRLNDSLGHQTGDEALKFLAR 539 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 ++ + R GGEEF G+ EA + +++++ ++++ + G +T Sbjct: 540 RVGEALRPTDTLARYGGEEFVVLLPGTPSDEAQRVLTRVQRLL-SAELFMYEGKQSFVTF 598 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 SAG+ E I + RAD+ALY AK++G+NR Sbjct: 599 SAGVTLYRPSEAIEVALQRADEALYEAKRTGKNRT 633 >gi|167035393|ref|YP_001670624.1| diguanylate cyclase [Pseudomonas putida GB-1] gi|166861881|gb|ABZ00289.1| diguanylate cyclase [Pseudomonas putida GB-1] Length = 493 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 8/167 (4%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ +D L+GL N +F + + L + D+D+FK +ND GH GD+V+ Sbjct: 328 LATLDSLTGLPNRRSFDLLAAQALHEAQRDSGPLVALLIDLDHFKALNDTHGHLAGDEVL 387 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L + R GGEEF + ++A +A +R+ E + P Sbjct: 388 RQFANVLQGSLRQSDILCRWGGEEFIVLLREAEGRQAVEVAEKIRRRTEQLTFSYDDQP- 446 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + +T S G++ ++ + ++ RAD+ALY AK++GRNRV ++ E Sbjct: 447 LRLTTSIGLSSLQPEDTLHALLTRADRALYRAKQAGRNRVCSDANHE 493 >gi|56475842|ref|YP_157431.1| hypothetical protein ebA784 [Aromatoleum aromaticum EbN1] gi|56311885|emb|CAI06530.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 384 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/254 (25%), Positives = 114/254 (44%), Gaps = 33/254 (12%) Query: 21 SFSPHTFMIYFSIFF-----SIFIATVIFIANIFLFYIGLT----PFYGLEY---ILVEN 68 +F P + S+F ++FI++ I +A Y+ + P + + +L+ Sbjct: 145 AFLPFVLLAGLSVFPLTLIENVFISSPILLAQALAGYLSWSTLNWPSFAGSFWLLMLITG 204 Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK 128 +S+ ++ + + S+ L +++R S ++ GL N + Sbjct: 205 VSMTAGMSQLAFMTALVRQSVRDPLTGAFSRGSGEEMLELQLGLANRN---------QAS 255 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +++ F D+D+FK IND FGH GDKV+ L+ + + R GGEEF + Sbjct: 256 ITVAFIDVDHFKSINDRFGHEAGDKVLITLATHITAALRRVDILVRWGGEEFVVIMPNTD 315 Query: 189 EQEAAILANDLRKIIEN-SQINISSGP-SIHITISAGIAERC--HKEPISTIIYRADQAL 244 +A R +E ++ + + P +T S G+AER +I +ADQ + Sbjct: 316 LAKA-------RTAVERLCRLGLGTAPDGTPVTASIGLAERSIDGAGDWKALIEKADQRM 368 Query: 245 YVAKKSGRNRVVCF 258 Y AK +GR+R VCF Sbjct: 369 YHAKHNGRDR-VCF 381 >gi|91977394|ref|YP_570053.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91683850|gb|ABE40152.1| diguanylate cyclase [Rhodopseudomonas palustris BisB5] Length = 381 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 13/173 (7%) Query: 90 LKELFISY----NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDN 145 L E F+ +R+++ + D L+GL N +AF+ +L + +I+ D+D FK +ND Sbjct: 190 LSEAFVERLEDKHRLARQATHDFLTGLPNRAAFLQALATIEGTFTIIAIDLDGFKSVNDR 249 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRK 201 GH GD+++ ++ +L + G R GG+EF + A EA LA R Sbjct: 250 HGHHAGDELLRQVAKRLALCTGADGIAARFGGDEFMLLKSITAGDDGRAEALDLAR--RA 307 Query: 202 IIENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSG 251 +I+ S S + I SAGI H S ++ R D+ALY AK++G Sbjct: 308 VIDLSMPYRLSDVPVRIGASAGILVSDHALAAGSTSQLLERVDRALYKAKRAG 360 >gi|310657884|ref|YP_003935605.1| hypothetical protein CLOST_0574 [Clostridium sticklandii DSM 519] gi|308824662|emb|CBH20700.1| protein of unknown function [Clostridium sticklandii] Length = 1751 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 82/180 (45%), Gaps = 11/180 (6%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 FI +S ID L+ N F + S S+V DID+FK +ND F Sbjct: 1402 FIDNYNLSLKYSIDKLTQAYNRQYFDIFIKNELESAQGQKSMFSLVIMDIDFFKSVNDTF 1461 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD + S + + R GGEEF +S EA +A+ +R+ I N Sbjct: 1462 GHSFGDVTLKRFSKIVQGSIRSSDLFARYGGEEFVLVLKHTSTVEAYSIADRIREKIYNE 1521 Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + P IT+S GI+ H +I +AD ALY AK SGRN+V + + NN+ Sbjct: 1522 LKDFEGKP---ITVSMGISTYPEHGVWEEELINKADIALYKAKDSGRNKVCIWDNTLNNS 1578 >gi|308069705|ref|YP_003871310.1| GGDEF domain containing protein [Paenibacillus polymyxa E681] gi|305858984|gb|ADM70772.1| GGDEF domain containing protein [Paenibacillus polymyxa E681] Length = 661 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 13/166 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDK 153 + + +L+ +D L+GL + + EK S++ DID FKQ+ND GH GD+ Sbjct: 496 HAEVRRLANMDMLTGLYVRHYVDQIIQQHQEKDFCGSLILVDIDQFKQVNDTHGHQTGDE 555 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ +S+ + R GGEE A Q+A A +R +++ + Sbjct: 556 ILKSVSNIVRSATRDEDVCARWGGEELAIYLPQLGVQQALGYAEKIRYRVQH-----ETE 610 Query: 214 PSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256 P +T+S GIAE + I ++ YRAD ALY AK GRNR V Sbjct: 611 P--QVTVSCGIAEWNWLDDQISIESLFYRADMALYEAKNEGRNRTV 654 >gi|289626820|ref|ZP_06459774.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868820|gb|EGH03529.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 527 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 15/172 (8%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLVALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A ++ + I + QI + + Sbjct: 396 RVVEQCIRRPGDVAARYGGEEIAVVLPGTDESSARQVAENILQAIRDEQIEHPASSFGIV 455 Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 T+S G+A +R + ++I AD+ALY AK GRNRV S+I +T Sbjct: 456 TVSLGVATFVGTDRQLDQ--RSLIELADRALYAAKSQGRNRVNVASEIATST 505 >gi|58582238|ref|YP_201254.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624131|ref|YP_451503.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576800|ref|YP_001913729.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576992|ref|YP_001913921.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426832|gb|AAW75869.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368071|dbj|BAE69229.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521252|gb|ACD59197.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521444|gb|ACD59389.1| Putative signal protein with GGDEF domain [Xanthomonas oryzae pv. oryzae PXO99A] Length = 973 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN S + ++ + L++V D+D+FKQ+ND+ GH VGD V+A + Sbjct: 809 DALTGLLNRSGILEAMAAELQGCAHGEHPLAVVLIDLDHFKQVNDDHGHLVGDAVLATVG 868 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L VGR GGEE G +Q L + + + + + + + +T Sbjct: 869 ARLTACLRDSDKVGRYGGEELLLLLPGVIQQSQRRL-RAIHEALSLAPYEVGAARPLQVT 927 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G++ + ++++ RAD+ALY AK+SGRNR+ Sbjct: 928 CSVGVSWFRVGDTAASLLARADEALYRAKRSGRNRI 963 >gi|323441850|gb|EGA99490.1| GGDEF domain-containing protein [Staphylococcus aureus O46] Length = 327 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 NR + D L+GL N F L + K ++++ DID FK +ND + H Sbjct: 153 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 212 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + R GGEEF+ S ++ LA ++R +E S ++ Sbjct: 213 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 272 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 + I +++S G+ +P S + AD ++VAK GRN+V+ Sbjct: 273 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 320 >gi|296100619|ref|YP_003610765.1| hypothetical protein ECL_00249 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055078|gb|ADF59816.1| hypothetical protein ECL_00249 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 532 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+G N AF + L S ++ ++ DID FK IND +GH GD V+ ++ + + Sbjct: 378 DALTGCKNRRAFDSDVDELLSAHQPFALALIDIDNFKSINDTWGHLSGDIVLRNVAREGI 437 Query: 164 VVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + P V R GGEEFA A L + R +E + ++ +T S Sbjct: 438 QIM-QPHNVSVYRYGGEEFAVIFQADQIASAFSLLDAWRTAVEK---RLWREENLRVTFS 493 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 AG+ E H EP+ ++ D ALY AK+ G+NR++ S Sbjct: 494 AGLGE-WHFEPLEELVGSVDNALYSAKQQGKNRIIRTS 530 >gi|291278657|ref|YP_003495492.1| hypothetical protein DEFDS_0225 [Deferribacter desulfuricans SSM1] gi|290753359|dbj|BAI79736.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 574 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 16/217 (7%) Query: 53 IGLTPFYGLEYILVENLSLVIISITISLL-LGYISGSILKELFISYNRISQLSRIDCLSG 111 I + Y E I+++N L I+ I+ L + + I ++L + ++S D L+G Sbjct: 360 IAVMKLYLKESIVIDNDILEILKEVINFLSIAFEREFIRRKLIEEREKFYEISIHDTLTG 419 Query: 112 LLNH---SAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL- 162 + I + + +++ + IV DID FK IND +GH VGD+V+ ++D + Sbjct: 420 CYSRYYLKETIKRVLAIHDRGEIRNVGIVMLDIDDFKNINDTYGHDVGDEVLKVIADIIK 479 Query: 163 --VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 V V P+ R GGEEF A+ + + ++A +R +E + + IT Sbjct: 480 NEVRVGDIPV---RYGGEEFMIVAVVNDIKSVYMVAERIRTKLEEYKWDAPLDKE-RITA 535 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S G+ R E +I R D LY AK +G+N V+C Sbjct: 536 SFGVVLRKKGESFEDVIKRVDINLYKAKSAGKNTVIC 572 >gi|316933746|ref|YP_004108728.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315601460|gb|ADU43995.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 389 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 12/189 (6%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS 130 LV+ +T+ ++S + + L + R+++ + D L+GL N + F+ +L S + Sbjct: 176 LVLFWLTLREASKHLSAAFTERLEAKH-RLARQATHDFLTGLPNRAGFLQALASSRGSFT 234 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALG 186 ++ D+D FK IND GH GD ++ ++++L G R GG+EF A Sbjct: 235 VIAIDLDGFKPINDRHGHHAGDDLLRQVAERLTACAGADGIAARFGGDEFMLLKPIADAE 294 Query: 187 SSEQEAAILAN----DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 EA LA DL S + + G S IT+S+G H + + R D+ Sbjct: 295 PGRNEALALARRAVFDLSMPFRLSDLPVCIGASAGITVSSGALS--HGS-TAQFLERVDR 351 Query: 243 ALYVAKKSG 251 ALY AK++G Sbjct: 352 ALYAAKRAG 360 >gi|209808971|ref|YP_002264509.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] gi|208010533|emb|CAQ80901.1| membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] Length = 487 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 9/174 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + S+L+ D L+G+ N +F +++ + SI+ DID FK+ ND +GH VG Sbjct: 315 KYSELAYNDYLTGVNNRRSFDLKGSQVLATYRRNRKPFSIIMCDIDNFKEYNDKYGHEVG 374 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D +I ++ + +GR GG+EF S ++A +A L+ +I + I Sbjct: 375 DTMITSFAEACLANLRDSDILGRFGGDEFVILLPEQSHEQAHFVAQKLQAVIRKIAVPIE 434 Query: 212 SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 + + +T S GI+ K I ++ AD LY AKKSGR+ V C + +++N Sbjct: 435 N-IELSMTCSMGISTITDPKVTIPELLSIADDRLYDAKKSGRDCVKCDAIVKSN 487 >gi|307153423|ref|YP_003888807.1| Chase2 sensor-containing diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306983651|gb|ADN15532.1| diguanylate cyclase with Chase2 sensor [Cyanothece sp. PCC 7822] Length = 583 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 78/168 (46%), Gaps = 13/168 (7%) Query: 102 QLSRIDCLSGLLN----------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +L RI CL GL + L + + LS++ DIDYFK ND +GH G Sbjct: 414 ELKRIACLDGLTQIANRRHFDQYYEQVWERLKAAQQPLSVILCDIDYFKFYNDQYGHQAG 473 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ + ++ L + FV R GGEEF + + A + + + + QI S Sbjct: 474 DRCLQQVAQTLAKAVRSTDFVARYGGEEFIIVLPSTDGETAYKIGQRICSQVRSLQIPHS 533 Query: 212 SGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 HI T+S G+A S+ +I AD ALY AK+ GRN VV Sbjct: 534 KSRVSHIVTLSCGVATLIPDTVSSSGILIATADSALYEAKEKGRNGVV 581 >gi|162447315|ref|YP_001620447.1| membrane-anchored GGDEF domain-containing protein [Acholeplasma laidlawii PG-8A] gi|161985422|gb|ABX81071.1| membrane-anchored GGDEF domain protein [Acholeplasma laidlawii PG-8A] Length = 388 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 19/268 (7%) Query: 3 RSLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLE 62 ++L FL I+L E L S T I ++ F I++ +F+ + +I + LE Sbjct: 121 QNLISFLIIYLVVEI-LNSVIKSTDKIKATLKFPIYVFCTLFLLLMMARFIAVNNHIILE 179 Query: 63 YILVENLSLVIISITIS----LLLGYISGSILK-----ELFISYNRISQLSRIDCLSGLL 113 I ++ + +S I ++LG++ I+ +L I + ++S D L+GL Sbjct: 180 LIPGQDFTYNFLSNIIGGILFVVLGFMISVIINIRAITDLKIERALMEKISVTDHLTGLP 239 Query: 114 NHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 N A ++S + + +++ DID FK+IND +GH +GDKVI S L+ + M Sbjct: 240 NRLALEKYVSKIEHNGQPYAVIIADIDEFKKINDTYGHMIGDKVIVEFSKALLNLNDDRM 299 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIHITISAGIA-ER 227 F R GG+EF + L +++ K I +QI ++ ++T+S G+A Sbjct: 300 FTARYGGDEFVTIV--KRFESVDTLKSNIAKTISTIGTQIKVNE-HHFNLTLSVGVAIYP 356 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRV 255 H I +I++AD AL K SG+N + Sbjct: 357 HHGTEIYELIHKADAALGDIKTSGKNSI 384 >gi|56696066|ref|YP_166420.1| diguanylate cyclase, putative [Ruegeria pomeroyi DSS-3] gi|56677803|gb|AAV94469.1| diguanylate cyclase, putative [Ruegeria pomeroyi DSS-3] Length = 598 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +L + +LS++ D+D+FK+ ND GH GD V+ + Sbjct: 408 DPLTGLFNRRHLTETLRKQLLHCQTRGGRLSLIAVDVDHFKKFNDTHGHDAGDMVLRAVG 467 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R+GGEEF L + ++A A LR+ +E + +T Sbjct: 468 AALEQACDRDEVACRIGGEEFMLVLLDCAPEDALTRAELLRQSVEEVSVRYGEKTLPRVT 527 Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255 ISAG+A + + R AD ALY AK GRN+V Sbjct: 528 ISAGVAHYPRHGTMPQDLMRAADDALYEAKGLGRNQV 564 >gi|325522176|gb|EGD00826.1| putative diguanylate cyclase [Burkholderia sp. TJI49] Length = 492 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 14/190 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I +S+LL S L+ + + + L+R D L+GL N +F L + Sbjct: 300 IALSVLLS----SQLRRRMRAESELILLARTDGLTGLDNRRSFGEVLDREWRRARRMRSV 355 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGS 187 S++F D+D FK ND +GH GD +A ++ + P V R GGEEF + Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGDSIRRPADVAARYGGEEFVVLLPDT 415 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALY 245 SE AA +A +R I + + +T S G+A H + II AD+ALY Sbjct: 416 SENGAAQIAERIRLAINELGLEHAGSEYGRVTASIGLASWTPEHDDDPGAIIKAADEALY 475 Query: 246 VAKKSGRNRV 255 AK +GRN++ Sbjct: 476 YAKATGRNKI 485 >gi|289679897|ref|ZP_06500787.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 609 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 21/210 (10%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115 +G +L ++ + ++ T LL+ LK + +I L+ D L+GL N Sbjct: 158 HGAPLVLDISVEFITLNNTACLLMNARDIGALKN---AQAQIQHLAYHDPLTGLPNRALL 214 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L Sbjct: 215 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 274 Query: 172 VGRLGGEEFAA---AALGSSE---QEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 V RLGG+EF GS + Q+ LA++LR ++ ++ G + +T S G+ Sbjct: 275 VARLGGDEFVVLICGLEGSQDEVTQQVRELADNLRNLL--AEPMFLDGHRLQVTPSIGVV 332 Query: 226 --ERCHKEPISTIIYRADQALYVAKKSGRN 253 P + ++ RAD ALY AK GRN Sbjct: 333 LIPDDGLTP-ADLLKRADIALYRAKDCGRN 361 >gi|254500287|ref|ZP_05112438.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222436358|gb|EEE43037.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 408 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 7/156 (4%) Query: 107 DCLSGLLNHSAFI------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 DCL+GL N A S+ N L+++ FDID FK++ND GH GD V+ Sbjct: 228 DCLTGLPNRRAVFERAEAFKSVSGANNCLTVIRFDIDEFKRVNDKHGHATGDLVLQVFGR 287 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 GRLGG+EF + +A ILA +R + + G ++ + + Sbjct: 288 VCEETRPVDTVAGRLGGDEFVILSTRMEPSKARILAERIRAHFAAACSEETEG-AVQVGL 346 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SAG++ + + AD+A+Y AK SGR + V Sbjct: 347 SAGVSSVPLDLGLDEALEIADRAMYEAKASGRGKTV 382 >gi|163783661|ref|ZP_02178649.1| Predicted signal transduction protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881066|gb|EDP74582.1| Predicted signal transduction protein [Hydrogenivirga sp. 128-5-R1-1] Length = 869 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 10/186 (5%) Query: 83 GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGS----YNEKLSIVFFD 135 GY+ ++ + I+ R++ ++ D L+G+ N I+ G YN+ +S++ D Sbjct: 435 GYLK--VVCQHLINTIRLTHMATTDPLTGVSNRRVLEHDIAKFGRLVKRYNKSMSLIMVD 492 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID FK IND +GH VGD V+ ++ + V R GGEEFA + + A L Sbjct: 493 IDNFKGINDTYGHQVGDVVLKKVAKLIEESVRETDTVYRYGGEEFAVLCPETDKLGAYEL 552 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNR 254 A +R+ I ++ I + I+IT+S G+A + I+ AD +LY AK G++R Sbjct: 553 AERIREKIRETKFWIDTSRVIYITVSLGVASVPEDTDNPDEILAIADISLYRAKSEGKDR 612 Query: 255 VVCFSD 260 +D Sbjct: 613 TAILTD 618 >gi|160875470|ref|YP_001554786.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS195] gi|160860992|gb|ABX49526.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS195] gi|315267657|gb|ADT94510.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS678] Length = 546 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 12/160 (7%) Query: 107 DCLSGLLNHSA-FISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNH+ +++ YN ++ I FD+D+FK++ND +GH GDKV+ + Sbjct: 384 DSLTGLLNHTQILVAARRCYNVARRINSQVCIAMFDLDHFKKVNDTYGHAGGDKVLLAFA 443 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L F GR GGEEF + A N +R+ + + + G +T Sbjct: 444 HLLQQSLRQTDFTGRYGGEEFMLVLPDMQKPLAIAKLNAIRESFSHI-VFVEDGVEFKVT 502 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+ ++ C E + AD+ LY AK+ GRN++V Sbjct: 503 LSGGLVFSDEC--EEFQDCLLLADKNLYEAKRLGRNQLVV 540 >gi|51594921|ref|YP_069112.1| diguanylate cyclase/phosphodiesterase [Yersinia pseudotuberculosis IP 32953] gi|51588203|emb|CAH19810.1| diguanylate cyclase/phosphodiesterase domain 1 [Yersinia pseudotuberculosis IP 32953] Length = 390 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 21/247 (8%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85 F+IF + I +++ FL + T + IL++ N+ +I +I + L+ L ++ Sbjct: 136 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 195 Query: 86 ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135 + ++ L + S LS ID L+ L N S L + + ++ D Sbjct: 196 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 255 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK NDN+GH +GD+ + +S + + V R GGEEF SE+ A+ L Sbjct: 256 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYASQL 315 Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A +R+ + I + S +T+SAGI+ ++ + AD+ALY AK++GRN Sbjct: 316 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 374 Query: 254 RVVCFSD 260 + D Sbjct: 375 NIEFAKD 381 >gi|51244717|ref|YP_064601.1| methyl-accepting chemotaxis protein [Desulfotalea psychrophila LSv54] gi|50875754|emb|CAG35594.1| probable methyl-accepting chemotaxis protein [Desulfotalea psychrophila LSv54] Length = 387 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 10/166 (6%) Query: 99 RISQLSRIDCLSGLLNHS-------AFISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPV 150 +I +L+ D L+ L ++ L NEKL +++ DID+FK+IN N+G Sbjct: 221 QIGELAIKDTLTNLYTKRFLKEILPTILTKLHQDNEKLLAVIDLDIDHFKKINANYGRSC 280 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ L++ ++ F R GGEEF ++E+E I ++ + + + Sbjct: 281 GDRVLKRLANIIIENTRPNDFSIRFGGEEFLLIGFFNNEKE-IIQITEIIRTETDCLVFD 339 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 HITISAGIA R +E T + RA + L AK+SGRNR+ Sbjct: 340 ERNEKFHITISAGIAIYRAEEELFETTLKRAGKKLQEAKESGRNRI 385 >gi|258593353|emb|CBE69692.1| putative Diguanylate kinase [NC10 bacterium 'Dutch sediment'] Length = 420 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 21/189 (11%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 + + +L+ D L+GL NH F S L Y LS++ DID FKQ ND GH Sbjct: 234 FQEVHRLAITDELTGLFNHRHFYSQLDQDLRRNRRYGHPLSLIMLDIDLFKQYNDFHGHL 293 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+ + + +L V R GG+EF + ++A + A +R ++ Sbjct: 294 AGDEALRLTAARLKKSTRGADIVARYGGDEFGIILPETDPRQALVQAERVRSVMARDHFG 353 Query: 210 ISSGPSIH-ITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVV--------C 257 P + +T+S G+A C + ++ ADQALY AK +G N++ C Sbjct: 354 GQGTPGRNTLTVSLGVA--CLGPDMYKVEDLVRAADQALYCAKAAGGNQIAVSESCGLPC 411 Query: 258 FSDIENNTC 266 S+ C Sbjct: 412 HSEGSGKGC 420 >gi|78357093|ref|YP_388542.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219498|gb|ABB38847.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 370 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 96/202 (47%), Gaps = 31/202 (15%) Query: 91 KELFISYNR----ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 +E+ + R +++L++ D LSGL N AF + S LS++ DID F Sbjct: 161 REVLLEMERDAAAMTELTQRDPLSGLHNRRAFDAFLSGAVQSWRREGTPLSLIMLDIDNF 220 Query: 140 KQINDNFGHPVGDKVIAFLSDQLV-VVFG------TPMFVGRLGGEEFAAAALGSSEQEA 192 K ND +GH +GD+ I ++ L V G V R GGEEF+ G+ A Sbjct: 221 KNFNDEYGHRIGDQAIQTVARILQEAVRGHAAEHEKDFLVARYGGEEFSVVLRGALASLA 280 Query: 193 AILANDLRKIIENSQ--INISSGP----SIHITISAGIA-----ERCHKEPISTIIYRAD 241 +A R +EN I +SG I IT+SAG+A R E +I AD Sbjct: 281 EKIAESARSSMENFNFVIRNNSGEVVRSGISITLSAGVAFASSLWRGAYE--DNLIDSAD 338 Query: 242 QALYVAKKSGRNRVVCFSDIEN 263 +ALY AK+ GRN V + D ++ Sbjct: 339 RALYEAKRGGRNLVFRYRDDQD 360 >gi|15893919|ref|NP_347268.1| signal transduction protein [Clostridium acetobutylicum ATCC 824] gi|15023503|gb|AAK78608.1|AE007578_6 Signal transduction protein containing diguanylate cyclase/phosphodiesterase domain (GGDEF) and domain (EAL) [Clostridium acetobutylicum ATCC 824] gi|325508046|gb|ADZ19682.1| Signal transduction protein containing diguanylate cyclase/phosphodiesterase domain (GGDEF) and domain (EAL) [Clostridium acetobutylicum EA 2018] Length = 772 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 10/197 (5%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125 + N +L+ I+L+L KEL + + +S D ++ + N L Sbjct: 309 INNETLLTYEKDINLILEEKIKERTKELLLKNQELEYISNHDPITNVYNRRYLNKRLQCI 368 Query: 126 -NEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 NEK ++I++ D+D FK IND +GH +GD V+ +SD+L + RLGG+E Sbjct: 369 INEKKLDNQVTILYIDVDGFKTINDTYGHDIGDYVLIEISDRLKKTVKENNILARLGGDE 428 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIY 238 F G +E + N K+I + + I S + ++TIS G+A H +I Sbjct: 429 FVIIIEGKLSKEE--IKNICEKLINSCKETIYSDNYLFNVTISIGVAMFPHDAISRNVIM 486 Query: 239 R-ADQALYVAKKSGRNR 254 + AD A+Y AK G+NR Sbjct: 487 KNADIAMYDAKSKGKNR 503 >gi|90422975|ref|YP_531345.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] gi|90104989|gb|ABD87026.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] Length = 850 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 103/195 (52%), Gaps = 16/195 (8%) Query: 75 SITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124 S+ +L L +++ S+ EL ++++L+ +D ++GL N +F++ L + Sbjct: 374 SLQRTLRLEFLTESLRGATAELQRESAKVARLASLDAMTGLANRVSFLAQLSTAFAAARQ 433 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-- 182 ++ + ++V D+D+FK +ND GHP+GD+++ + +L+ + + RLGG+EFA Sbjct: 434 HDGRFAVVCLDLDHFKDVNDTLGHPIGDRLLQIAARRLIGMLKAGDLIARLGGDEFAILL 493 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRAD 241 A + + AAI A + + E ++ G + H++ S GI+ ++ AD Sbjct: 494 AEVCDRDAIAAIAARLIEGLAERYDLD---GNAAHVSASLGISIYGPATASAEAMMIEAD 550 Query: 242 QALYVAKKSGRNRVV 256 ALY AK GRN V Sbjct: 551 LALYSAKSEGRNGYV 565 >gi|331652055|ref|ZP_08353074.1| inner membrane protein YcdT [Escherichia coli M718] gi|331050333|gb|EGI22391.1| inner membrane protein YcdT [Escherichia coli M718] Length = 493 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 7/157 (4%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID+FK++ND +GHP+GD+VI + + Sbjct: 326 DPLTNIFNRNYFFNELTVQSASAKKTPYCVMIMDIDHFKKVNDTWGHPIGDQVIKTVVNI 385 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 + R+GGEEF + A LA +R+ +E + N +TI Sbjct: 386 IGKSIRPDDLFARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQKVTI 445 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 S G IYR AD ALY AK++GRN+VV Sbjct: 446 SIGAVVTQGNALNPNEIYRLADNALYEAKETGRNKVV 482 >gi|330959165|gb|EGH59425.1| response regulator WspR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 334 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAVRDQTQLSMLMIDVDYFKAYNDNFGHLEGD 224 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + +I +I Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMKIPHI 284 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 + +T+S G+A + +S+ +I AD+ LY+AK +GRN+V Sbjct: 285 APAAGSSLTVSIGVATVTPQLEMSSRELILDADKGLYLAKNNGRNQVAV 333 >gi|304408802|ref|ZP_07390423.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS183] gi|307302805|ref|ZP_07582560.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica BA175] gi|304352623|gb|EFM17020.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS183] gi|306913165|gb|EFN43587.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica BA175] Length = 546 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 12/159 (7%) Query: 107 DCLSGLLNHSA-FISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNH+ +++ YN ++ I FD+D+FK++ND +GH GDKV+ + Sbjct: 384 DSLTGLLNHTQILVAARRCYNVARRINSQVCIAMFDLDHFKKVNDTYGHAGGDKVLLAFA 443 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L F GR GGEEF + A N +R+ + + + G +T Sbjct: 444 HLLQQSLRQTDFTGRYGGEEFMLVLPDMQKPLAIAKLNAIRESFSHI-VFVEDGVEFKVT 502 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G+ ++ C E + AD+ LY AK+ GRN++V Sbjct: 503 LSGGLVFSDEC--EEFQDCLLLADKHLYEAKRLGRNQLV 539 >gi|285018862|ref|YP_003376573.1| two-component system response regulator protein [Xanthomonas albilineans GPE PC73] gi|283474080|emb|CBA16581.1| putative two-component system response regulator protein [Xanthomonas albilineans] Length = 460 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 9/164 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L+GL N F+ + + +S+ D+D+FK +ND GH GD Sbjct: 270 LQDLATRDFLTGLPNRRHFLEQSQRVLPQCLTDQQSVSVAMLDLDHFKHVNDTLGHDAGD 329 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + ++ L + R GGEEF G E LR I Q+N+ Sbjct: 330 EALRAVASVLTAYARPQDLIARFGGEEFCMLVPGLDEAATTDYFEKLRARIAELQVNVGE 389 Query: 213 GPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ +TIS G+ + + + + + AD+ LY+AK +GRNRV Sbjct: 390 -KTLRLTISIGVCSSQIQNQALHPFLIEADKYLYLAKAAGRNRV 432 >gi|158425163|ref|YP_001526455.1| GGDEF precursor [Azorhizobium caulinodans ORS 571] gi|158332052|dbj|BAF89537.1| GGDEF precursor [Azorhizobium caulinodans ORS 571] Length = 519 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 18/179 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVG 151 ++++L+R D L+G+ N F LG SY ++++ D+D+FK ND GH G Sbjct: 336 QLNELARADGLTGIANRRRFDERLGQEWRRSYRSSGTMALLMIDVDHFKAFNDTHGHWTG 395 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209 D ++ ++ L P + R GGEEF AA L +++E A+ +A + + + Sbjct: 396 DDLLIRIAATLSQTVHRPGDLIARYGGEEF-AAILPDTDREGALRIAERILDAVRALRFE 454 Query: 210 ISSGPSIHITISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S+G + +T+S G C P ++ I+ AD ALY AK GRN ++ D+ Sbjct: 455 DSAGQVLPVTVSIGA---CALSPSPGQQVADIVRLADAALYEAKDRGRNCIIMAPDMPR 510 >gi|153825043|ref|ZP_01977710.1| ggdef family protein [Vibrio cholerae MZO-2] gi|149741368|gb|EDM55402.1| ggdef family protein [Vibrio cholerae MZO-2] Length = 359 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 19/164 (11%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G LN L NE I DID+FK +ND +GH GDKVI Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237 Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 Q+V + T + RLGG+EF +S +A ++ + + I+ + Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+AE + RADQALY +KK G+NRV Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRADQALYHSKKMGKNRV 333 >gi|220932323|ref|YP_002509231.1| diguanylate cyclase [Halothermothrix orenii H 168] gi|219993633|gb|ACL70236.1| diguanylate cyclase [Halothermothrix orenii H 168] Length = 462 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 79/165 (47%), Gaps = 9/165 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG---SY----NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+ L+ D + L N F L SY N+ LS+V FDID FK +ND++GH GD Sbjct: 294 INYLAITDEGTDLYNQRYFYKRLNRLFSYAKKNNKPLSVVIFDIDNFKSLNDSYGHLFGD 353 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ ++ L + R GGEEFA + A +A +R I+ Sbjct: 354 KVLREVASLLQDNIRKNDILARYGGEEFALILPKTGASIAYNIAERIRCIVNKHIFETGG 413 Query: 213 GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G I I+IS GIA C +I AD+ALY +K G+N + Sbjct: 414 GHKIKISISGGIATYPECKVSKAIELIDLADKALYKSKDDGKNMI 458 >gi|261250682|ref|ZP_05943256.1| GGDEF family protein [Vibrio orientalis CIP 102891] gi|260937555|gb|EEX93543.1| GGDEF family protein [Vibrio orientalis CIP 102891] Length = 348 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 107/220 (48%), Gaps = 28/220 (12%) Query: 52 YIGLTPFYGLEYILVENLSLVIISITISLLLG----YISG-----SILKELFISYNRISQ 102 YI L + I +N+S + +SI L Y SG ++LKE S ++ Sbjct: 137 YICLIDMHNWPPIPFDNISFIHLSIVYLFLFSIAYFYDSGRRKTLALLKE---SNRQLQA 193 Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 LS D L+ L N + L ++ + DID FK+IND++GH VGD+V+ + L Sbjct: 194 LSHTDMLTQLFNRRHMEALLQEPHKVQWLAIVDIDDFKKINDDYGHDVGDQVLIQTARTL 253 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---GPSIHIT 219 + VGR GGEEF A + +I+ +R I Q I+S G +T Sbjct: 254 ERETKSVGQVGRWGGEEFLIAF---ETADYSIIEERVRAI----QTIIASQDFGIERPVT 306 Query: 220 ISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258 +S+G+A H++ S RAD+ALY AK SG+N CF Sbjct: 307 VSSGVA--YHQDTGKSDAFRRADEALYQAKNSGKN---CF 341 >gi|209519183|ref|ZP_03267987.1| diguanylate cyclase [Burkholderia sp. H160] gi|209500409|gb|EEA00461.1| diguanylate cyclase [Burkholderia sp. H160] Length = 510 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 13/179 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+R D L+GL N F + N LS++ D+D FK ND +GHP GD Sbjct: 318 LRELARTDGLTGLNNRRTFEEHVNDEWRRAQRNNWPLSLLLIDVDNFKGFNDLYGHPAGD 377 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + ++ + P R GGEEFA + A +A +R ++ Q Sbjct: 378 GALIGVARCIEQNMRRPGDTAARFGGEEFAVLLPDTDAAGAQRIAEQIRAAVQALQRGHV 437 Query: 212 SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF-SDIENNTC 266 + +T+S G A H I+T ++ AD+ALY AK +GRNRV+ + + + +TC Sbjct: 438 ASAHHVLTVSVGAAT-AHGALIATSRVLVDAADEALYRAKDAGRNRVMVYGATADTDTC 495 >gi|83312993|ref|YP_423257.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1] gi|82947834|dbj|BAE52698.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1] Length = 558 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 14/202 (6%) Query: 64 ILVENLSLVIISITISLLLGYISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISS 121 +L +S S LL+ ++ + E ++ R+ +LSR D L+GL N AF Sbjct: 345 LLWREMSRAAWSDDDRLLIDDVANQVGLASEQITNHERMVKLSRTDGLTGLFNRRAFFEE 404 Query: 122 LGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVG 173 + +L ++++ D+D FK +ND GH GD+ + + D L++ P+ V Sbjct: 405 IARRFHRLKREGKPAALIYVDLDNFKAVNDVHGHQTGDEALLAVRD-LLLQHTRPIDLVA 463 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKE 231 RLGG+EFA + E A D+ + ++ S P + S G+A + E Sbjct: 464 RLGGDEFAIWLEAAEEHIAVKRCQDVLEAAKDLD-RFSGSPEKPLGCSLGVAVHGGSYNE 522 Query: 232 PISTIIYRADQALYVAKKSGRN 253 + +I RAD+A+Y K+SG+ Sbjct: 523 ALEDLIARADKAMYEVKRSGKG 544 >gi|226942938|ref|YP_002798011.1| intracellular signalling protein [Azotobacter vinelandii DJ] gi|226717865|gb|ACO77036.1| intracellular signalling protein with diguanylate cyclase and phosphodiesterase activities [Azotobacter vinelandii DJ] Length = 802 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 14/178 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDN 145 + E + R+ L+ D L+ L + ++ L + LS++F DID+FK+IND Sbjct: 360 ISERLQAEQRLRFLAHFDPLTHHLANRHYLVQRLEQLLATRTPLSLLFLDIDHFKRINDT 419 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRK 201 GH VGD ++ ++ +L + + V R GG+EF A A + + A L D + Sbjct: 420 LGHEVGDHLLVEIARRLTRLVPDQVLVARSGGDEFLLLLARRAAEQARELAETLLRDFKT 479 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ Q PSI GIA + + ++ +AD ALY AK +GRNR+ +S Sbjct: 480 PLQVGQYECFLTPSI------GIANCDGQGDATDLLKQADLALYAAKDAGRNRLAVYS 531 >gi|117924807|ref|YP_865424.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Magnetococcus sp. MC-1] gi|117608563|gb|ABK44018.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Magnetococcus sp. MC-1] Length = 571 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 17/211 (8%) Query: 67 ENLSLVII---SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----- 118 E LSL II + IS +G S ++ I+ ++ + D L+GL N S Sbjct: 363 EWLSLSIIRGENQQISHYIGLFSDITTRK--IAEEKLKHQAHHDPLTGLPNRSLLEDRLQ 420 Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 +S Y K+++++ D+D+FK +NDN+GH GD V+ +S ++ R+G Sbjct: 421 QAVSKARRYEGKIAVLYIDLDHFKPVNDNYGHEAGDAVLREISARIRYELRQSDTAARVG 480 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHITISAGIA-ERCHKEPIS 234 G+EF A + +E ++ +K+I Q ++ G S + S GI+ H I+ Sbjct: 481 GDEFVAVL--TEIREEHLVMGVAQKLIHAIQKPVNFGNESFQVGCSIGISLYPIHGNSIT 538 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 ++ AD A+Y AK+ GRNR C + ++ T Sbjct: 539 KLLKSADTAMYRAKQEGRNR-FCVATLDKET 568 >gi|315635908|ref|ZP_07891170.1| diguanylate cyclase [Arcobacter butzleri JV22] gi|315479887|gb|EFU70558.1| diguanylate cyclase [Arcobacter butzleri JV22] Length = 619 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 9/162 (5%) Query: 106 IDCLSGLLNH---SAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+GL N FI + K +I+F DIDYFK IND +GH GD ++ L Sbjct: 447 VDGLTGLYNRRYLDEFIEKKLPHESQDGSKFAIMFLDIDYFKMINDTYGHDAGDAILQKL 506 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 SD + F+ R GGEEF +E A LA + + N +G + Sbjct: 507 SDTMKASISENEFIVRFGGEEFLIIMKNPTESSARELATKINQEFAKLVFNY-NGQAFSK 565 Query: 219 TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 T+S G + + I I AD +LY AK++GRN++V F Sbjct: 566 TVSIGYSFFPDDADQIWKCIKYADISLYEAKETGRNKIVRFQ 607 >gi|262279015|ref|ZP_06056800.1| GGDEF domain-containing protein [Acinetobacter calcoaceticus RUH2202] gi|262259366|gb|EEY78099.1| GGDEF domain-containing protein [Acinetobacter calcoaceticus RUH2202] Length = 409 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 11/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL ++S LS+ D L+GL N +L + + L+I+ DIDYFK ND Sbjct: 222 ELMQQAQQLSLLSQQDALTGLANRRYLDETLDNEWRRALRHEMPLTIMMVDIDYFKAYND 281 Query: 145 NFGHPVGDKVIA-FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH GD+ + + + V R GGEEF ++ Q+A I L I Sbjct: 282 TLGHLKGDECLKEIAIAISSIAARSGDLVARYGGEEFLLLFPMTNAQQALIQVERLMNAI 341 Query: 204 ENSQI-NISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254 + I + S S +TIS G+A + + IS + RAD ALY AK +GRN+ Sbjct: 342 DKIAIKHPCSDVSPQVTISVGVATTIPRLNDSISAFVARADHALYKAKTNGRNQ 395 >gi|227823490|ref|YP_002827463.1| sensory box/GGDEF family protein [Sinorhizobium fredii NGR234] gi|227342492|gb|ACP26710.1| sensory box/GGDEF family protein [Sinorhizobium fredii NGR234] Length = 888 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 11/161 (6%) Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N LG + +++SI D+D FKQIND GH GD+++ + Sbjct: 466 DPLTGLPNRRFLDQILGDHARQFDARDRVSIFHIDLDRFKQINDTMGHAAGDEILRHAAG 525 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHIT 219 L FV R+GG+EF G + +E A LA+ IIE + I Sbjct: 526 LLRSSARESDFVARIGGDEFVIIRAGGNTEEDAALAS---SIIEAMSTPVRYKDQECRIG 582 Query: 220 ISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S GI A+ + ++ I+ AD ALY AK+ GRNR F+ Sbjct: 583 VSIGIAAQAAATDELAQILVNADIALYEAKRRGRNRHETFT 623 >gi|254504373|ref|ZP_05116524.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222440444|gb|EEE47123.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 307 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 14/159 (8%) Query: 107 DCLSGLLNH----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G+ N + + L + + L I DID+FK+IND GH +GD I ++ +L Sbjct: 151 DALTGVPNRRFLEAELPARLSAADLSLHIALIDIDHFKKINDAHGHVIGDHAIRVVA-RL 209 Query: 163 VVVFGTPMFV-GRLGGEEFAAAALGSSEQEA-----AILANDLRKIIENSQINISSGPSI 216 + P V R GGEEF + E I ++ R+ I +++ S GP Sbjct: 210 IQTHLRPQDVLCRYGGEEFCVLFYNTEPAECLSLLETIRSDISRRTIYHNRTGQSFGP-- 267 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +TISAG+A+ + + T + RAD +Y AK +GRNR+ Sbjct: 268 -MTISAGLAQSQPGDDLETALQRADAQMYAAKSTGRNRI 305 >gi|160933913|ref|ZP_02081300.1| hypothetical protein CLOLEP_02775 [Clostridium leptum DSM 753] gi|156866586|gb|EDO59958.1| hypothetical protein CLOLEP_02775 [Clostridium leptum DSM 753] Length = 692 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 19/179 (10%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKL---SIVFFDIDYFKQINDNFGHP 149 + +R+ + + D L+G N A + + Y +E + ++ F DID FK ND++GH Sbjct: 518 LETSRLKRQASTDSLTGTYNRKAAVELISDYLLSEPMPQGALFFMDIDDFKSFNDDYGHQ 577 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---- 205 GDK++ + ++L F VGR+GG+EF S +EA I RK E Sbjct: 578 YGDKILQKIGEKLRGAFRGTDIVGRIGGDEFIVFLEEISSREAII-----RKAREVCGMF 632 Query: 206 SQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCFSDI 261 ++ G IT S G+A C + +++ +ADQALY AKK G+N+ +D+ Sbjct: 633 RKVGDEIGSPREITGSVGVA--CSPDDGLSFDSLLAKADQALYHAKKCGKNQFSFSTDL 689 >gi|294666653|ref|ZP_06731890.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603559|gb|EFF46973.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 515 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 16/200 (8%) Query: 71 LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125 +V+ ++ +LLLG ++ L+ + + ++S + +D L+G+ N AF L Sbjct: 315 IVVAALGCTLLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQ 373 Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179 LS++ D+D+FK ND +GH GD + ++ + + R GGEE Sbjct: 374 DAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEE 433 Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235 F + A LA+ +R + E +++SS S H+T+S G A + P+S Sbjct: 434 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNA 493 Query: 236 IIYRADQALYVAKKSGRNRV 255 I++ AD ALY AK+ GRNR Sbjct: 494 IVHDADSALYRAKQKGRNRT 513 >gi|325982978|ref|YP_004295380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosomonas sp. AL212] gi|325532497|gb|ADZ27218.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosomonas sp. AL212] Length = 798 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 8/164 (4%) Query: 107 DCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GLLN F + L N+ ++++ D+D FK IND+ GH GDK++ ++ Sbjct: 371 DSLTGLLNRKEFENRLSKILTSMRKNDMHALLYLDLDQFKIINDSCGHSAGDKLLRQVTA 430 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L + RLGG+EF + +A +A+ LR++++N + G + I + Sbjct: 431 LLHSKLRARDTLARLGGDEFGVILEHCPKDQALQVADTLRELVQNFRFQW-RGKTFTIGV 489 Query: 221 SAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S G+ H + + + AD A Y AK+ GRNRV + + + Sbjct: 490 SIGLFPITHGNQGLEHALNAADSACYAAKEQGRNRVQIYQSVPH 533 >gi|209549382|ref|YP_002281299.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535138|gb|ACI55073.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 760 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 15/181 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQIND 144 K+L + R+ LS D L+GL N F+ + S + L ++ D+D FK+IND Sbjct: 317 KKLVRARQRLEYLSLHDALTGLANRR-FVDQMISQPRRPDGEDCLILIHIDLDRFKEIND 375 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKII 203 GH GD V+ + +L + G R+GG+EF A ++ E EAA LA ++I+ Sbjct: 376 TKGHAGGDMVLQTTASRLADLTGPTDVAARIGGDEFIFARWSANPEPEAAELA---KQIV 432 Query: 204 ENSQINIS-SGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + Q I G + S G+A E + ++ AD ALY AKK+GR R F+ Sbjct: 433 DALQQPILIDGAEYVVGASVGVAWETEPASGRDLGQLLLNADLALYEAKKAGRGRAAIFT 492 Query: 260 D 260 + Sbjct: 493 E 493 >gi|241666725|ref|YP_002984809.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862182|gb|ACS59847.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 747 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 15/181 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQIND 144 K+L + R+ LS D L+GL N F+ + S + L + D+D FK+IND Sbjct: 303 KKLVRARQRLEHLSLHDALTGLPNRR-FVDRMISQPPRPRPQDCLIFIHIDLDRFKEIND 361 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKII 203 GH GD V+ + +L + G R+GG+EF A+ + E +A LA R+I+ Sbjct: 362 TRGHAGGDAVLQATASRLADLVGPNDVAARIGGDEFIFASWSADPEPKATALA---RQIV 418 Query: 204 EN-SQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + Q I + + S G+A ER + ++ AD ALY AKK+GR R F+ Sbjct: 419 DTLDQPLIIDDAACVVGASVGVAWETERALGPDLGQLLLNADLALYEAKKAGRGRAAVFT 478 Query: 260 D 260 + Sbjct: 479 E 479 >gi|217958216|ref|YP_002336760.1| sensory box/GGDEF family protein [Bacillus cereus AH187] gi|217064052|gb|ACJ78302.1| sensory box/GGDEF family protein [Bacillus cereus AH187] Length = 567 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|119512832|ref|ZP_01631899.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena CCY9414] gi|119462505|gb|EAW43475.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena CCY9414] Length = 314 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 12/183 (6%) Query: 85 ISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDI 136 IS S L++ S N+ + +L+ ID L+ + N F L +++ S++ D+ Sbjct: 129 ISQSQLQKQLESANQELQKLATIDQLTQIANRRRFEEYLVPEWQRMAREQLPISLILGDV 188 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 D+FK ND +GH +GD+ + ++ + + + V R GGEEF ++ + A IL Sbjct: 189 DFFKLYNDTYGHQLGDRCLQAVAKSIQNTIKRSTDLVARYGGEEFTVILPNTNMEGAIIL 248 Query: 196 ANDLRKIIENSQINISSGP-SIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGR 252 A+ + ++ I S+ P S +TISAG+A K II AD+ALY AK +GR Sbjct: 249 ADAICTVVRKLAIPHSTSPVSSFVTISAGVATLIPKPGSDYQQIIALADKALYQAKTAGR 308 Query: 253 NRV 255 +R+ Sbjct: 309 DRL 311 >gi|160900682|ref|YP_001566264.1| response regulator receiver modulated diguanylate cyclase [Delftia acidovorans SPH-1] gi|160366266|gb|ABX37879.1| response regulator receiver modulated diguanylate cyclase [Delftia acidovorans SPH-1] Length = 360 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 11/183 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 S+ EL + +++++ +D L+GL+N F I+S + L+++ D+D+FK Sbjct: 167 SLSAELHEANQKLNEMVELDQLTGLVNRRGFDRILHAEIASARREGQPLTLMLCDLDHFK 226 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDL 199 + ND +GH GD+ + + L V P V R GGEEFA + A A + Sbjct: 227 RYNDTYGHVHGDECLKQIGRLLREVCVRPRDVAARYGGEEFALILPRTPRSGAMTFARAV 286 Query: 200 RKIIENSQINISSGP-SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 +++ +I P +T+S GI E S ++ RADQALY AK GR+R Sbjct: 287 GQMLRVLRIRHPDSPHESGLTLSGGITTCIPDEYTSAEAMLMRADQALYAAKAQGRDRFF 346 Query: 257 CFS 259 F Sbjct: 347 SFE 349 >gi|84386952|ref|ZP_00989976.1| hypothetical protein V12B01_23320 [Vibrio splendidus 12B01] gi|84378242|gb|EAP95101.1| hypothetical protein V12B01_23320 [Vibrio splendidus 12B01] Length = 467 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDK 153 + R++ L+ D L+GLLN F + L + +E+ + + FDID FK +ND GH VGD+ Sbjct: 294 EHQRLNDLAMRDPLTGLLNRRGFEARLLAQDEQPIIGVGVFDIDDFKVVNDQHGHKVGDE 353 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 VI ++ ++ V R GGEEF A G S + + + ++ I +G Sbjct: 354 VICHVAQLMLNSVRQQDIVARFGGEEFVVAITGESSELLSSIFERIQNDISLQSYRCPTG 413 Query: 214 PSIHITISAG-----------IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++I++S G + + I + +D+ LY AK +G+N+V Sbjct: 414 DKVNISVSGGATLYSLYKFDSVGHLWENQSIRS----SDEQLYKAKAAGKNQV 462 >gi|327485429|gb|AEA79835.1| GGDEF family protein [Vibrio cholerae LMA3894-4] Length = 359 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 19/164 (11%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G LN L NE I DID+FK +ND +GH GDKVI Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237 Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 Q+V + T + RLGG+EF +S +A ++ + + I+ + Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+AE + RADQALY +KK G+NRV Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRADQALYHSKKMGKNRV 333 >gi|291527143|emb|CBK92729.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale M104/1] Length = 860 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 10/166 (6%) Query: 98 NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 RI + D L+GL N + FI + + ++++ D+D FK IND GH Sbjct: 429 QRIENQANNDFLTGLYNRMRCEQDLAKFIDDSVKNDTRGAMIYIDLDDFKHINDGLGHQY 488 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ +S L V R+GG+EF GSS + ND+++I Sbjct: 489 GDVLLKAISHSLTQVKEIENHCYRMGGDEFIVIVTGSSVDRLESIINDIQQIFVRPW--F 546 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + TISAG+A + +I RAD AL+ AKK G+NR+ Sbjct: 547 LKGEDYYCTISAGVAFFPTDASTVEDVIRRADIALFNAKKEGKNRI 592 >gi|188581844|ref|YP_001925289.1| diguanylate cyclase [Methylobacterium populi BJ001] gi|179345342|gb|ACB80754.1| diguanylate cyclase [Methylobacterium populi BJ001] Length = 506 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 15/206 (7%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE- 127 L L +++T+SLL G L+ + +++LSR D L+GL N F L E Sbjct: 298 LVLCGLTVTLSLLFG----RELRRRAEMHAEMARLSRTDALTGLANRRRFEQVLARACED 353 Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEF 180 LS++ D D+FK+ ND +GH VGD+V+ L+ L P + R+GGEEF Sbjct: 354 ARRTGNPLSLLVVDADHFKRYNDRYGHAVGDEVLKGLAGCLKAAVPRPGDLACRVGGEEF 413 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 + A +A + + I + +T+S G+A + + A Sbjct: 414 VLLLPNTDAAGARRVAERVHAQVSGLAIASAGIAPGAVTVSIGLATGITDADLYGL---A 470 Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266 D ALY AK GRN+ C S + + Sbjct: 471 DAALYEAKACGRNQTRCASRLTGRSA 496 >gi|254225207|ref|ZP_04918820.1| GGDEF family protein [Vibrio cholerae V51] gi|125622306|gb|EAZ50627.1| GGDEF family protein [Vibrio cholerae V51] Length = 359 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 19/164 (11%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G LN L NE I DID+FK +ND +GH GDKVI Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237 Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 Q+V + T + RLGG+EF +S +A ++ + + I+ + Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+AE + RADQALY +KK G+NRV Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRADQALYHSKKMGKNRV 333 >gi|289664597|ref|ZP_06486178.1| response regulator [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667163|ref|ZP_06488238.1| response regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 494 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 12/178 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 L+ + + ++S + +D L+G+ N AF L +LS++ D+D+FK Sbjct: 315 LRRMHRNEAKLSTEAWVDALTGIANRRAFDYRLSCALQDAVRLEAQLSVLMIDVDHFKLY 374 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD + ++ + V R GGEEF + A LA+ +R Sbjct: 375 NDTYGHVNGDACLRLIASAIASCSRRSEDVAARYGGEEFGMILPQTDAAGALRLADAVRN 434 Query: 202 -IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 + E +++SS S H+T+S G A + P+S I++ AD ALY AK+ GRNR Sbjct: 435 AVAELGLMHLSSPTSAHVTVSIGAATFEPGQAPLSANAIVHDADSALYRAKQKGRNRT 492 >gi|212638999|ref|YP_002315519.1| GGDEF and EAL domain-containing protein [Anoxybacillus flavithermus WK1] gi|212560479|gb|ACJ33534.1| Multidomain signal transduction protein (GGDEF and EAL domains) [Anoxybacillus flavithermus WK1] Length = 765 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 21/167 (12%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N AF+ L +++F D+D FKQIND FGH +GD++I + Sbjct: 338 DFLTGLFNRRAFVMKLEEELIRAKQQQHHFAVIFIDVDRFKQINDYFGHQIGDELIVQIG 397 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP----- 214 L F+ R GG+EF ++LR+ + + ++ S P Sbjct: 398 RLLKETIRPTDFIARQGGDEFTIIFTPFKH------VDELRRFV-HRLVSFSQQPVAVQH 450 Query: 215 -SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 I I++S G+A + E + T++ AD A+Y AK+ G+N+ F+ Sbjct: 451 LDIRISLSVGVAVYPYDGETVETLMKHADIAMYRAKEQGKNQYQFFN 497 >gi|39934196|ref|NP_946472.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris CGA009] gi|192289722|ref|YP_001990327.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris TIE-1] gi|39648044|emb|CAE26564.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) [Rhodopseudomonas palustris CGA009] gi|192283471|gb|ACE99851.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris TIE-1] Length = 776 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 15/171 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLS-IVFFDIDYFKQINDNFGHP 149 RI L+R D L+ L N +F + G +LS ++F D+D FKQIND GHP Sbjct: 330 RIVHLARYDELTALPNRVSFRDEIERILEAEHGRGKTRLSALLFIDLDQFKQINDTLGHP 389 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN-SQ 207 GD+++ ++++L + +V R GG+EF +S ++AA LA R+I++ S Sbjct: 390 CGDRLLCSVAERLRDMLRPDDYVARFGGDEFVVFQQNIASNEDAAALA---RRIVDRLSD 446 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + I S GIA ++ AD ALY AK GR CF Sbjct: 447 RYLIDHHVVEIGASIGIAMTSPGTKADILLKNADMALYRAKADGRGN-YCF 496 >gi|109899678|ref|YP_662933.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica T6c] gi|109701959|gb|ABG41879.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica T6c] Length = 666 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 6/163 (3%) Query: 107 DCLSGLLNHSAFISSLGSY--NEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+ L N AF +L + +LS + F D+DYFK IND GH GD+++ ++ L Sbjct: 254 DPLTELQNRRAFERNLHEIMDDRRLSYFLCFIDLDYFKTINDTCGHAAGDEILVKVARIL 313 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + V RLGG+EF+ A +AN++++ I + G + H++ S Sbjct: 314 KANVRSNDIVARLGGDEFSILIKDCPFDNALQIANNIKENIRGLTYHW-EGETFHLSASI 372 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G+A + H + ++ AD A +AK +GRN V + D+ N T Sbjct: 373 GVAPKVHGSTTTELLNSADVACGIAKNAGRNTVHLY-DVSNET 414 >gi|300713226|ref|YP_003739265.1| diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661] gi|299060297|emb|CAX53547.1| diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661] Length = 702 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 9/168 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGD 152 S R+ +L+ +D L+ L + SAF+ LG E +++ D+D FK++ND GH GD Sbjct: 271 SEARLCELASLDMLTRLASRSAFMEQLGQMTEAGVPYTLLMTDLDGFKEVNDTLGHAAGD 330 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 ++ +++Q+ + + RLGG+EF G EA + A ++I QI S Sbjct: 331 ALLCHVAEQIRLACADAVVAARLGGDEFIVLLCGGV-AEATLTAE---RLISCIQIPFSY 386 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G + + S GIA H S ++ AD ALY AK SG+ V F Sbjct: 387 HGAPLIVGASTGIASFPEHGLDPSAVMSAADLALYRAKASGKGCSVLF 434 >gi|302878474|ref|YP_003847038.1| diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302581263|gb|ADL55274.1| diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 315 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 14/183 (7%) Query: 88 SILKELFISYNRISQL---SRIDCLSGLLNHSAFIS------SLGSYNEK-LSIVFFDID 137 +LKE I++ R L + D L+GL N + + S+ + E+ +S++F D+D Sbjct: 133 DLLKE--ITHRRQKHLFGLAHFDQLTGLPNRTLLLDRLSQGISVANRTERAISLLFIDLD 190 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK +ND++GH +GD ++ ++ +L+ R+GG+EF L S+ + A +AN Sbjct: 191 GFKYVNDSYGHAIGDSLLKEVATRLLSCLREGDTAARMGGDEFVVILLESNIERAVSVAN 250 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+ S + I+ S GIAE H + ++ ++ AD+A+Y AK SG++++ Sbjct: 251 RILNILR-SHYELGKKDISCISASIGIAEHPDHADDVNALLTAADKAMYQAKNSGKDQIS 309 Query: 257 CFS 259 ++ Sbjct: 310 IYT 312 >gi|218679447|ref|ZP_03527344.1| diguanylate cyclase with PAS/PAC sensor [Rhizobium etli CIAT 894] Length = 182 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 15/170 (8%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+G++N AF + N S++ DID FK ND +GHP GD+ + Sbjct: 3 LAETDGLTGIVNRRAFDEAFARETAGSARKNTPFSLLMVDIDRFKAYNDTYGHPAGDQCL 62 Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +S L P V R GGEEF +S + A I+A + + I S Sbjct: 63 RVVSKCLRQSVSRPADIVARYGGEEFVVFLPDTSAKGAMIVAEQFARRLAKENIAHSGSE 122 Query: 215 SIHITISAGIAERCHKEPI-----STIIYRADQALYVAKKSGRNRVVCFS 259 +T S G+A C + + ++ AD ALY AK GRNR++ S Sbjct: 123 FSRVTASIGLA--CATGAVLRTNPNRLLTEADAALYDAKTQGRNRILAHS 170 >gi|163782897|ref|ZP_02177893.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Hydrogenivirga sp. 128-5-R1-1] gi|159882018|gb|EDP75526.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Hydrogenivirga sp. 128-5-R1-1] Length = 525 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 13/167 (7%) Query: 98 NRISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ L+ D L+G+ N A ++ S Y S++ D+D FK +ND FGH Sbjct: 364 RKLHTLATHDQLTGVYNRRALLMFFEKYLHSARRYGIPFSVILIDLDNFKYVNDQFGHQT 423 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ + + GR GGEEF AL + ++A LR+ +E ++ + Sbjct: 424 GDRVLKTFAKLVKGSLRRTDVFGRWGGEEF--LALLPFNDKPYMVAEKLRRKVEETEFSR 481 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +T S G + I +++ RAD+ALY AK+ G+N V Sbjct: 482 VG----RVTASFGATTYREGDDIDSMMARADEALYEAKRKGKNTTVV 524 >gi|146309094|ref|YP_001189559.1| diguanylate cyclase [Pseudomonas mendocina ymp] gi|145577295|gb|ABP86827.1| diguanylate cyclase [Pseudomonas mendocina ymp] Length = 439 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 28/200 (14%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVF 133 + + IS+++ + S+ E + Q++ D L+GL A L I Sbjct: 229 LQVMISMVMLMLVASVAHEAY-------QMAFRDELTGLPGRRALNERLQRLGRDYVIAM 281 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D+FK+ ND GH VGD+V+ ++ QL V G R GGEEF G S ++ Sbjct: 282 VDVDHFKKFNDTHGHDVGDQVLRLVASQLRKVGGGGKAY-RYGGEEFTLLFPGRSLEQCL 340 Query: 194 ILANDLRKIIENSQINI-------------------SSGPSIHITISAGIAER-CHKEPI 233 +R IE ++ + + +T+S G+AER + Sbjct: 341 PHMETVRLAIEQYRMQLRDKQNRPRDDREGKPRRAGKGASEVSVTVSMGVAERKAEQRNP 400 Query: 234 STIIYRADQALYVAKKSGRN 253 +I AD+ALY AK +GRN Sbjct: 401 QEVIKEADKALYSAKAAGRN 420 >gi|110633701|ref|YP_673909.1| response regulator PleD [Mesorhizobium sp. BNC1] gi|110284685|gb|ABG62744.1| response regulator receiver modulated diguanylate cyclase [Chelativorans sp. BNC1] Length = 457 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 79/160 (49%), Gaps = 9/160 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N S L S LS++ DID FK IND +GH GD V+ ++ Sbjct: 295 DPLTGLHNRRYLDSHLQSLFDRAEARRRPLSVMIVDIDRFKSINDTYGHDGGDAVLRAVA 354 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHI 218 +L V R GGEEF + A + +R +I E + + S +I + Sbjct: 355 ARLRRSLRGIDLVCRYGGEEFVVVMPETELSIAERVGERIRQQIAEGAFLLGDSAGAISV 414 Query: 219 TISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVC 257 T+S G+A ++ + ++ RAD ALY AK SGRNRVV Sbjct: 415 TVSIGVAALLQPQDTVEALMKRADMALYEAKSSGRNRVVA 454 >gi|331694351|ref|YP_004330590.1| diguanylate cyclase [Pseudonocardia dioxanivorans CB1190] gi|326949040|gb|AEA22737.1| diguanylate cyclase [Pseudonocardia dioxanivorans CB1190] Length = 286 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 12/172 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 L SYNR R L+ LL+ A + + + + DID+FKQ+ND +GH +GD Sbjct: 97 LTASYNRRYLDER---LAALLSDLADLGDDTVRTDGICVALADIDHFKQVNDTYGHLLGD 153 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + +L F R GGEEFA G EA L R+ I + Sbjct: 154 RVLQRMVVELDAALPEGAFCARYGGEEFALVLPGRDLAEAVRLCEAARERIARHPWH-EL 212 Query: 213 GPSIHITISAGIAERCHKEPISTIIYR----ADQALYVAKKSGRNRVVCFSD 260 P + +T+S G+A H + T + R AD LY AK+SGRN V + D Sbjct: 213 HPDLTVTVSIGVA---HSDGRPTGVERLIGAADAHLYTAKQSGRN-AVAYRD 260 >gi|262274571|ref|ZP_06052382.1| hypothetical protein VHA_001548 [Grimontia hollisae CIP 101886] gi|262221134|gb|EEY72448.1| hypothetical protein VHA_001548 [Grimontia hollisae CIP 101886] Length = 531 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 11/178 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 +L + R++Q+SR D L+ + N L Y LSI+ DID+FKQ ND Sbjct: 354 QLEEANKRLNQISREDSLTQVPNRRMLDEKLDEEWRRALRYQTPLSILIVDIDHFKQYND 413 Query: 145 NFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH +GD+ + +++ L V + R GGEEF GSS + A +AN + Sbjct: 414 KYGHALGDQCLTKVAEALSNVERRAGALLARFGGEEFVFLLPGSSRENALCVANRALDAV 473 Query: 204 ENSQINISSGPSIHI-TISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVVCF 258 N I P I TIS G +P + AD ALY AK +G+N+ F Sbjct: 474 RNLAIPHGGSPIAPIVTISIGGKTTIPDKPNNQQQLFIDADVALYEAKSAGKNQAFVF 531 >gi|260768669|ref|ZP_05877603.1| GGDEF family protein [Vibrio furnissii CIP 102972] gi|260616699|gb|EEX41884.1| GGDEF family protein [Vibrio furnissii CIP 102972] Length = 382 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 87/181 (48%), Gaps = 12/181 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEK------LSIVFFDIDYFKQIN 143 ++L + ++ LS D L+ L N + L +Y NE L + D DYFKQ+N Sbjct: 193 QQLMQANRQLEALSMTDSLTALPNRRKAMRQLEAYWNESQQQGLPLVCIMIDADYFKQVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH GD+V+ L+ L F + V RLGG+EF + +A R+ + Sbjct: 253 DSCGHDAGDRVLMALAHTLKHAFRSDDLVCRLGGDEFLVICPNTDLDGGVHIAELTRQQV 312 Query: 204 ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 N + P +IS G+AE H +I AD A+Y AKK+G+NR VC + Sbjct: 313 NNLLVPTGMEP-WRGSISVGVAE-SHGFMNDHHALIKLADTAVYRAKKAGKNR-VCVAQF 369 Query: 262 E 262 E Sbjct: 370 E 370 >gi|226307762|ref|YP_002767722.1| hypothetical protein RER_42750 [Rhodococcus erythropolis PR4] gi|226186879|dbj|BAH34983.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 786 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 17/188 (9%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIN 143 GS + + I +L+ +D L+GL N +F S L S ++ + D+D FK IN Sbjct: 328 GSDITHSYHQRQNILRLAEVDSLTGLRNRYSFNSQLSSRLRDGRRVWLAILDLDNFKSIN 387 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA---ILANDLR 200 D GH VGD V+ ++ +L V + GRLGG+EFA A S+ ++A I + D Sbjct: 388 DRLGHHVGDDVLRDVASRLHSVLRSNEICGRLGGDEFAIAFDDSAFDDSAFDDIASAD-- 445 Query: 201 KIIENSQINISS--------GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSG 251 ++ E Q + S G I I S G + + ++ AD ALY AK+SG Sbjct: 446 EVEERFQTILDSFERPFSLVGNQIRIRASLGYGSMPDDADSLEDLVIVADLALYHAKESG 505 Query: 252 RNRVVCFS 259 RN++ F Sbjct: 506 RNQIRAFD 513 >gi|302185551|ref|ZP_07262224.1| GGDEF [Pseudomonas syringae pv. syringae 642] Length = 334 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 11/167 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRATREQSQLSMLMIDVDYFKPYNDNFGHLEGD 224 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + I +I Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHI 284 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 + P +T+S G+A + + + +I AD+ LY AK +GRN+V Sbjct: 285 APVPGSSLTVSIGVATMTPQVGMQSRQLILDADKGLYQAKNNGRNQV 331 >gi|206978155|ref|ZP_03239037.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97] gi|222094380|ref|YP_002528439.1| sensory box, ggdef family protein [Bacillus cereus Q1] gi|206743627|gb|EDZ55052.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97] gi|221238437|gb|ACM11147.1| sensory box, GGDEF family protein [Bacillus cereus Q1] Length = 567 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|59713525|ref|YP_206300.1| GGDEF domain-containing protein [Vibrio fischeri ES114] gi|59481773|gb|AAW87412.1| GGDEF domain protein [Vibrio fischeri ES114] Length = 443 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 6/159 (3%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 Y +++ + D ++G + L + E S + DID+FK++ND +GH GD VI Sbjct: 282 YVKVTIMRSYDHMTGFYRRDFYEPKLKAL-ESASFLMIDIDHFKRVNDTYGHDFGDVVIQ 340 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ ++ R GGEEF ++ + A +R++IE+ I+ I Sbjct: 341 EVAHRIQNCIRVNDIAIRWGGEEFIVIFQKINQDDLMNKAESIREVIESKSID-----GI 395 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ITIS G A + E +S I RAD ALY +K +GRN V Sbjct: 396 EITISIGGATQRDFEAVSDAIKRADIALYYSKNAGRNIV 434 >gi|323488320|ref|ZP_08093568.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis MPA1U2] gi|323397978|gb|EGA90776.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis MPA1U2] Length = 796 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138 S + LKE + +++ ++ D LSGL N F+ L + + KL++VF D+D Sbjct: 349 SNNQLKE---TVHQMKHMAYHDILSGLPNRRLFLEKLEASIVEAKHKSHKLAVVFIDLDR 405 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAN 197 FK IND FGH GD ++ S +++ + + R GG+EF E++ A + + Sbjct: 406 FKNINDTFGHEFGDLLLQAFSQRILDNLRSIDTLSRQGGDEFTLLLNAIKEEKDIAPIIH 465 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 L+K +E I G ++I++S GI+ + ++ AD A+Y AK+ GRN Sbjct: 466 KLQKALEKPL--IIKGQELYISMSIGISVYPKDGDTTDELLKNADNAMYSAKEKGRNNYQ 523 Query: 257 CFS 259 FS Sbjct: 524 FFS 526 >gi|325981725|ref|YP_004294127.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosomonas sp. AL212] gi|325531244|gb|ADZ25965.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosomonas sp. AL212] Length = 1136 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 12/168 (7%) Query: 96 SYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 S R++ L+ D L+GL N H A +L + +++ ++ D+D FK +ND+ G Sbjct: 684 SEARLAHLAHYDALTGLPNRLLVQSRLHHAIERTL-RHGNQIAALYLDLDRFKNVNDSLG 742 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206 HP+GD+++ L+ +L + RLGG+EF E A++A L ++ + Sbjct: 743 HPIGDELLVMLALRLKKRLREEDTLARLGGDEFLVVLEDIKDSNEPAMVAQTLIDLLA-T 801 Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 ++ SG I I S GI+ ++ +I AD A+Y+AK+ GRN Sbjct: 802 PFSLPSGHEIFINTSIGISLFPTDANSVTELIQHADMAMYLAKQEGRN 849 >gi|254785909|ref|YP_003073338.1| ggdef family protein [Teredinibacter turnerae T7901] gi|237685702|gb|ACR12966.1| ggdef family protein [Teredinibacter turnerae T7901] Length = 427 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 8/173 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEKL---SIVFFDIDYFKQIN 143 L +L + +LS D L+G++N + A I +L +L +++ DID+FK+IN Sbjct: 250 LHQLREESAQYKKLSTTDALTGVINRAGLDAIIHALTLEPGQLCGMAVLVLDIDHFKRIN 309 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH VGD+++ + ++ R GGEEF A LA +R + Sbjct: 310 DSRGHDVGDRILFEFARKIKACIRADDIFARWGGEEFIVLARLGDHASVQTLAEKIRTAV 369 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S S + +T+S G A E RADQ LY AK GRN VV Sbjct: 370 YQSTFEPSH--PVKLTVSIGAARITADEAFEQAFRRADQLLYQAKNLGRNCVV 420 >gi|226314792|ref|YP_002774688.1| hypothetical protein BBR47_52070 [Brevibacillus brevis NBRC 100599] gi|226097742|dbj|BAH46184.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 530 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 8/162 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155 +++ +R D L+GL N ++ + + SI+ D+D FK IND +GH GD+V+ Sbjct: 368 QLTHDARTDPLTGLTNRRTLEETMQKWMAEQIPFSIMMMDLDRFKAINDTYGHQAGDEVL 427 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + R GGEEF + +EA +A +R+ +E I Sbjct: 428 RHFAKIISSSLRPEDVSCRFGGEEFVVLVSHTGLEEAYQVAERIRRALETRTNPIGQ--- 484 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+S GIA H +++ AD+A+Y AK++GRN+ + Sbjct: 485 -RLTVSQGIAHYPSHAVSPEGLLHVADEAMYKAKRAGRNQTM 525 >gi|229916655|ref|YP_002885301.1| diguanylate cyclase [Exiguobacterium sp. AT1b] gi|229468084|gb|ACQ69856.1| diguanylate cyclase [Exiguobacterium sp. AT1b] Length = 351 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 7/158 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 + + ID L+GL N + + + +++ D+D+FKQ+ND +GH GD + Sbjct: 195 THRATIDELTGLPNRYRTLEQMNDMEMSGKPWTLLVIDVDHFKQLNDTYGHLAGDAALRH 254 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + L FVGR GGEEF G +A + + + ++ G I Sbjct: 255 IGQTLERHRPPAGFVGRYGGEEFLLVIEGGEGMTK--VAEGIVQTVRHTTFEF-QGERIP 311 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G A H EP + RAD ALY AK++GR++V Sbjct: 312 MTVSIGAAIAGH-EPSMVVFERADAALYEAKRNGRDQV 348 >gi|94265550|ref|ZP_01289297.1| GGDEF:GAF:Histidine kinase, HAMP region [delta proteobacterium MLMS-1] gi|93453950|gb|EAT04300.1| GGDEF:GAF:Histidine kinase, HAMP region [delta proteobacterium MLMS-1] Length = 595 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 22/188 (11%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIV 132 LL ++ I E+ ++ R+ +L+ D L+GL + +++ + + S++ Sbjct: 409 LLAAVAEQI--EITLANARLYRLAITDGLTGLYSKRYCETAINKFRDTHAADQGRLFSVL 466 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSE 189 D+D+FK +ND GHPVGD+V+ L++ + R GGEEF A + ++E Sbjct: 467 MLDLDHFKLVNDTHGHPVGDEVLIQLAELIRGSIRQDDIACRYGGEEFIILVAEGIKAAE 526 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITIS---AGIAERCHKEPISTIIYRADQALYV 246 Q +A L + + SG + TIS AG E H + + +I ADQALY Sbjct: 527 Q----IAERLCRAVAEHVFRCRSGLELRCTISIGGAGFPE--HGQNAAEVIAAADQALYQ 580 Query: 247 AKKSGRNR 254 AK GRNR Sbjct: 581 AKNGGRNR 588 >gi|326410776|gb|ADZ67840.1| GGDEF domain-containing protein [Brucella melitensis M28] gi|326554068|gb|ADZ88707.1| GGDEF domain-containing protein [Brucella melitensis M5-90] Length = 191 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 19/196 (9%) Query: 72 VIISITISLLLGYISGSILKELFISY-------NRISQLSRIDCLSGLLNHSAFISSLGS 124 +++ I++LLG S L+EL SY N +++++ +D L+GLLN +FI + Sbjct: 1 MLLPFLIAMLLGVFWFSRLEELERSYRTAVKRANELARVASVDPLTGLLNRRSFIQQFNA 60 Query: 125 YNEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 N+ +F D+DY KQIND +GHP GD I ++ L + + R+GG+EF Sbjct: 61 ANKAGVRGWFLIVDVDYLKQINDQYGHPAGDDAIIAVAQALEDCLSSDSLIARIGGDEFC 120 Query: 182 A-AALGSSEQEAAILAN-DLRK--IIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 A G+ ++L++ LR ++ + N+ S +T+S G + ++ Sbjct: 121 AFVPKGAINDVDSVLSDISLRADGLLREKRPNVGS----SLTVSVGRISCKTGQIFEEVL 176 Query: 238 YRADQALYVAKKSGRN 253 AD+ LY KKS R Sbjct: 177 SIADEQLY-RKKSQRQ 191 >gi|319401177|gb|EFV89392.1| diguanylate cyclase domain protein [Staphylococcus epidermidis FRI909] Length = 356 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 18/213 (8%) Query: 55 LTPFYGLEYILVENLSLVIIS--ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112 L+P Y L VE L L+ IS ITI+ + ++ + F NR + D L+GL Sbjct: 144 LSPIYEL----VEILVLIPISFIITIASAITFVD---IWHFFSLVNRYENEDKYDYLTGL 196 Query: 113 LNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 N F L + K L+++ DID FK +ND++ H GD V+ +S L Sbjct: 197 GNVKEFDRHLNEVSSKAEEKKQSLALLLIDIDGFKDVNDHYSHQSGDAVLKQMSQLLKNY 256 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 + R GGEEF+ + ++ LA ++R +E S ++ + I +++S G+ Sbjct: 257 VPNQFKIFRNGGEEFSVVIRDYTLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVG 316 Query: 226 ERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 + S + AD ++VAK GRN+V+ Sbjct: 317 YLTQDDRKSQRKVFKDADDMVHVAKSEGRNKVM 349 >gi|313683572|ref|YP_004061310.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313156432|gb|ADR35110.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 445 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 16/180 (8%) Query: 90 LKELFISYNR-ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 + ++ NR ++QL+ D L+ + N F +S + L+++ D+DYFK+ Sbjct: 269 ITQILQQKNRHLTQLATKDSLTEIHNRHMFAELFSQELSIIKRQGGNLALMMIDLDYFKR 328 Query: 142 INDNFGHPVGDKVIA-FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND +GH +GD V+ F+S V +F R GGEEF + +EA + +R Sbjct: 329 VNDTYGHNIGDYVLKRFVSLVASSVREADLF-ARWGGEEFVLLLRNTGCEEAYCVGEKIR 387 Query: 201 KIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +IE I + IT S GI E ++ + + I RAD ALY AK GRNR + S Sbjct: 388 SMIE-----IQPFEDVGRITCSIGITEVRSEDTLISAIERADNALYSAKDMGRNRTMTCS 442 >gi|298249673|ref|ZP_06973477.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963] gi|297547677|gb|EFH81544.1| diguanylate cyclase [Ktedonobacter racemifer DSM 44963] Length = 713 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 87/185 (47%), Gaps = 11/185 (5%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEKLS---IVFFDIDY 138 G +L EL Y + + ID ++ L NH A +S +L + S I+F D+D+ Sbjct: 529 QGVLLLELEKLYREQAFAATIDPVTELPNHRAVMSYIDATLARAQAEHSSFIIMFIDLDH 588 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK +ND +GH GD ++ ++ +L +GR GGEEFA S A Sbjct: 589 FKSVNDQWGHRAGDTILYEVAQRLHANLHQEDVIGRYGGEEFALICTNSDLPTTRKRARQ 648 Query: 199 LRKIIENSQINIS---SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254 L I+ S + I +T S GIA H +I +AD+A+Y AK+ GRN Sbjct: 649 LCTILAERPFLCSVRDNTYEISVTASIGIAAYPRHGTTRDALIEQADRAMYRAKQKGRNC 708 Query: 255 VVCFS 259 + C S Sbjct: 709 ICCSS 713 >gi|91223439|ref|ZP_01258704.1| response regulator [Vibrio alginolyticus 12G01] gi|91191525|gb|EAS77789.1| response regulator [Vibrio alginolyticus 12G01] Length = 405 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 5/158 (3%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +++ D L+GL N N + +I DID+FKQ+ND GH GD V+ +++ Sbjct: 253 KMANQDALTGLWNRRFLFEQPHVENAQRNIAMLDIDFFKQVNDTHGHEGGDAVLVMIANI 312 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L + F + V RLGGEEF A G + L +R+ IE + I +I +T S Sbjct: 313 LKIYFPNDI-VARLGGEEFCIQASGDYDGFLTRLEQ-MRQRIEKTPITYLD-KNILVTAS 369 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G++ + + I AD+ LY+AK++GRN+++ S Sbjct: 370 IGVSNI--EGELEQQIKVADERLYMAKENGRNQIISSS 405 >gi|70732798|ref|YP_262565.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68347097|gb|AAY94703.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5] Length = 332 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N AF+ + ++++ D+D+FK+++D +GH GD+V+ S Sbjct: 167 DALTGIGNRRAFMVNGERMLIECQRRCSPMALLLCDLDHFKRLDDAYGHQTGDQVLVAFS 226 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L GT R+GGEEFA + EQ A +A +R+ + S+ I Sbjct: 227 QVLAETLGTKDVYARIGGEEFACLLAATDEQAAVTVAERVRQAFARLPLLEPGLLSVSIG 286 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ++ + ++ AD+ALY AK GRNRV Sbjct: 287 V---VSSETRGYDLPRLLSLADEALYDAKHQGRNRV 319 >gi|89093685|ref|ZP_01166632.1| hypothetical protein MED92_11284 [Oceanospirillum sp. MED92] gi|89082081|gb|EAR61306.1| hypothetical protein MED92_11284 [Oceanospirillum sp. MED92] Length = 444 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 9/166 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGH 148 + + +L+ D ++GL N + L + L V DIDYFK+IND +GH Sbjct: 274 ARQKAERLAHTDVMTGLDNRRSLYQKCDEILKFLNRSTDHLCAVVIDIDYFKKINDTWGH 333 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD I + D L R GGEEFA + +A A +R IE I Sbjct: 334 NIGDHAIKLVGDLLKQSIRRTDIAARYGGEEFALILPNTDLHQAYKFAEKVRLRIEEMVI 393 Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 + SI +T S G+A + ++ AD ALY AK++GRN Sbjct: 394 E-TENESIDLTASFGVATYNASMNEVGDLLNAADIALYSAKRAGRN 438 >gi|254228737|ref|ZP_04922160.1| fog: ggdef domain containing protein [Vibrio sp. Ex25] gi|262396541|ref|YP_003288394.1| GGDEF family protein [Vibrio sp. Ex25] gi|151938684|gb|EDN57519.1| fog: ggdef domain containing protein [Vibrio sp. Ex25] gi|262340135|gb|ACY53929.1| GGDEF family protein [Vibrio sp. Ex25] Length = 527 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 91/192 (47%), Gaps = 15/192 (7%) Query: 75 SITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS---YNE 127 + + L+L + LKE + N ++QL + D L+ L N L ++ Sbjct: 336 ELQLKLILSELENKELKETTKQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDLLLHDT 395 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAA 183 + +++ DID+FK IND H VGDK I +S +L F F G R GGEEF Sbjct: 396 EFALMVIDIDHFKSINDELSHLVGDKAIKRVSQELAGYF---KFKGASCVRFGGEEFLVI 452 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 S+ + A + A + R+ I + G +T+S GI E YRAD+A Sbjct: 453 LENSNLERAEMHAENYRERIYQYGWDDILGER-GLTVSIGITLHREGENTQRTFYRADKA 511 Query: 244 LYVAKKSGRNRV 255 LY AK +GRN+V Sbjct: 512 LYRAKANGRNQV 523 >gi|326423984|ref|NP_761170.2| GGDEF family protein [Vibrio vulnificus CMCP6] gi|319999363|gb|AAO10697.2| GGDEF family protein [Vibrio vulnificus CMCP6] Length = 515 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 13/154 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ LN AF L EK S++ FDID+FKQIND +GH GD+V+ ++D Sbjct: 362 DPLTHTLNRRAFRHDLTQMLEKQAAFSLIGFDIDHFKQINDRYGHLGGDQVLIDVAD--- 418 Query: 164 VVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V GT + G R GG+EF + + E +R IE + IH T Sbjct: 419 -VIGTVLQEGDRFYRFGGDEFGILSSVTERSELECYLEAIRDRIEKTACYYQD-TEIHCT 476 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +S G A C +E + ++ + D LY +K GRN Sbjct: 477 LSIGAAVHCDEE-LEDLVQKMDVQLYRSKDKGRN 509 >gi|302186511|ref|ZP_07263184.1| GGDEF [Pseudomonas syringae pv. syringae 642] Length = 397 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 28/190 (14%) Query: 85 ISGSILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSLGSYNE--KLSIVFFD 135 + G +L+ + + R L+R+ + ++ + H+ NE ++I+ D Sbjct: 221 LRGRLLQVQLVEFARTDGLTRLFNRRYQDEVMTSVWEHA--------RNEPANVAIILLD 272 Query: 136 IDYFKQINDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 ID+FK NDN+GHP GD + L Q G F R GGEE +G++ Q Sbjct: 273 IDHFKSYNDNYGHPQGDTCLRLLCQKVQQSAHAHGAVAF--RFGGEEVLVLMIGNAVQAR 330 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKK 249 + + E + G + +TIS G+A C P+++ +I AD ALY AK+ Sbjct: 331 EVAGALQNAVAELKLPHPVLGENALVTISLGVA--CATAPLTSAENLIGAADNALYAAKR 388 Query: 250 SGRNRVVCFS 259 +GRN VCF+ Sbjct: 389 AGRN-CVCFA 397 >gi|242238669|ref|YP_002986850.1| diguanylate cyclase [Dickeya dadantii Ech703] gi|242130726|gb|ACS85028.1| diguanylate cyclase [Dickeya dadantii Ech703] Length = 359 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D+FK +ND++GH GD ++ +S L + G R GG+E S+++ Sbjct: 228 LMLIDVDHFKYVNDSYGHEAGDYLLTEISVVLRNIAGKYDVPARFGGDELGIIIQNSTDK 287 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 + A+ L + + I + + P+ TIS GIA H + + ADQALY AKKS Sbjct: 288 IVTMTAHQLHAKV--ATIRLPADPTFCCTISIGIARAEHAATPQSWLNSADQALYAAKKS 345 Query: 251 GRNR 254 G+NR Sbjct: 346 GKNR 349 >gi|261408356|ref|YP_003244597.1| diguanylate cyclase [Paenibacillus sp. Y412MC10] gi|261284819|gb|ACX66790.1| diguanylate cyclase [Paenibacillus sp. Y412MC10] Length = 387 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 126/279 (45%), Gaps = 51/279 (18%) Query: 19 LESFSPHTF-MIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77 L SF P+T I+ SI+F V+ +A ++L Y +TP G L++ +I Sbjct: 122 LPSFLPYTLDPIWQSIYFD-----VLQLAALYLAYTQVTPRIGQPIKYALGLAVYVIWTI 176 Query: 78 ISLLLGYISGSILKEL----------------FISYNRISQLSR-------IDCLSGLLN 114 + + Y SGS+ L FI + RI +L + D L+GL N Sbjct: 177 LQAVHTY-SGSLSPALQGLALALPVLFYSIVFFILFRRIVELMQSIYRSAITDGLTGLYN 235 Query: 115 HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVI----AFLSDQLVVVFG 167 F+ L Y K+S +F DID FK++ND GH D+V+ A + ++L + Sbjct: 236 RRHFMKHLDHYAAQELKISAIFCDIDNFKKLNDTQGHARADEVLKQVAAIMEEELEGIGI 295 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER 227 T GR GGEE A + + A + ++ S + IS G S+ + G+ Sbjct: 296 T----GRYGGEELVALVVDRKAKPAQVAEKIRARVASESIVTISIGYSV---LRKGVRG- 347 Query: 228 CHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 ++ +AD+A+Y +K +G+N+V + ++ + Sbjct: 348 ------DELMKQADKAMYHSKTTGKNKVSDYRSLKTAST 380 >gi|149375546|ref|ZP_01893316.1| diguanylate cyclase [Marinobacter algicola DG893] gi|149360251|gb|EDM48705.1| diguanylate cyclase [Marinobacter algicola DG893] Length = 359 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 85/169 (50%), Gaps = 9/169 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S ++ ++++ D L+GL N + YN ++++ D+D+FK++ND +GH Sbjct: 173 SQRQLLKIAQTDTLTGLANRARLSDIFEREQQRARRYNTPMTLLALDLDHFKEVNDRYGH 232 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD + ++ RLGGEEF ++ Q+ +A +R + ++ + Sbjct: 233 DTGDLTLQHVARIFRECLRATDLPARLGGEEFGILLTNTNGQQGLEVAEKIRIAVASTPL 292 Query: 209 NISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +++ I +T+S G+AE + + ++ AD+ LY AK GRN ++ Sbjct: 293 TVNND-VIRLTLSGGVAEFGPDGDTLRQLVREADKRLYEAKDRGRNLII 340 >gi|90420618|ref|ZP_01228525.1| possible signaling protein with EAL, GGDEF domains [Aurantimonas manganoxydans SI85-9A1] gi|90335346|gb|EAS49099.1| possible signaling protein with EAL, GGDEF domains [Aurantimonas manganoxydans SI85-9A1] Length = 808 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 9/160 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 I+ ++ D L+GL N +F L + + +IV D+D FK +ND GHPVGD ++ Sbjct: 373 ITHMAYHDALTGLPNRRSFQDELKARFDSAKPTTIVMIDLDRFKAVNDTLGHPVGDALLI 432 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-S 215 ++D+L + RLGG+E A L ++ + LA R+++E + ++ Sbjct: 433 QVADRLRACCNPNDLIFRLGGDEL--AILPGDDEHSDTLA---RRVVEGFERPFTADKHR 487 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I I S G+A + ++ +AD ALY AKK+GRNR+ Sbjct: 488 ISIGCSVGLATADDVDDPDLVVRQADLALYKAKKNGRNRI 527 >gi|71909120|ref|YP_286707.1| diguanylate cyclase [Dechloromonas aromatica RCB] gi|71848741|gb|AAZ48237.1| diguanylate cyclase [Dechloromonas aromatica RCB] Length = 638 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 80/170 (47%), Gaps = 11/170 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+GL N +L + LS+V DID+FKQ+ND +GH VGD Sbjct: 471 LQELAVRDSLTGLYNRRYLDETLEREVSRARREGIPLSLVMLDIDHFKQVNDTYGHQVGD 530 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ L+ L R GGEEF + + A R +E +++ Sbjct: 531 EVLRILASTLSADIRAEDVACRYGGEEFLILLPNMPLETTMLRAQGWRSAVE--ALSVKH 588 Query: 213 GP-SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G I TIS G+A H + + ADQALY AK GRN+V F D Sbjct: 589 GNFQITFTISLGVAAYPEHGKTPDDLTRCADQALYRAKNEGRNQVSVFFD 638 >gi|330827910|ref|YP_004390862.1| GGDEF domain-containing protein [Aeromonas veronii B565] gi|328803046|gb|AEB48245.1| GGDEF domain protein [Aeromonas veronii B565] Length = 462 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 18/196 (9%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--- 125 L+ V+I + + L S EL + R+ + + D L+GLLN AF+ ++ Sbjct: 265 LAGVLIMVAYIVQLRRAVASRTAELSRANARLEKQASTDPLTGLLNRRAFMPAMEQRLAS 324 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----A 181 +++ FD+D+FK+ ND FGH +GD ++ L+ + + + R+GGEEF Sbjct: 325 GAPCALLLFDVDHFKETNDRFGHGIGDLLLEKLATTVTNLLPEEALLARIGGEEFCLLLP 384 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG----IAERCHKEPISTII 237 A L +E+ A + + I ++ SSG + ++IS G AER + ++ Sbjct: 385 LATLAETEEWAERICLE----INRQTLHTSSG-EVTLSISTGAVWVAAER--EADADQLL 437 Query: 238 YRADQALYVAKKSGRN 253 +AD +Y AK GRN Sbjct: 438 RQADALMYQAKGLGRN 453 >gi|320156043|ref|YP_004188422.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] gi|319931355|gb|ADV86219.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] Length = 515 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 13/154 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ LN AF L EK S++ FDID+FKQIND +GH GD+V+ ++D Sbjct: 362 DPLTHTLNRRAFRHDLTQMLEKQAAFSLIGFDIDHFKQINDRYGHLGGDQVLIDVAD--- 418 Query: 164 VVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 V GT + G R GG+EF + + E +R IE + IH T Sbjct: 419 -VIGTVLQEGDRFYRFGGDEFGILSSVTERSELECYLEAIRDRIEKTACYYQD-TEIHCT 476 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +S G A C +E + ++ + D LY +K GRN Sbjct: 477 LSIGAAVHCDEE-LEDLVQKMDVQLYRSKDKGRN 509 >gi|261339974|ref|ZP_05967832.1| GGDEF domain protein [Enterobacter cancerogenus ATCC 35316] gi|288317892|gb|EFC56830.1| GGDEF domain protein [Enterobacter cancerogenus ATCC 35316] Length = 709 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 125/253 (49%), Gaps = 40/253 (15%) Query: 33 IFFSIFIATVIFIANI-FLFYIGLTP--FYGLEYIL--------------VENLSLVIIS 75 +F + +A ++ A I + Y G++ F+ +E+I+ V L L+ I Sbjct: 171 VFINRIVAALVMGAAICAMHYTGMSAAHFHEMEHIVPGGISELGLSIWVSVTTLCLLGIM 230 Query: 76 ITISLLLGYISGSILKELFISYNRISQL-SRIDCLSGLLN------------HSAFISSL 122 + ISL+ + + L + NR +L +R D L+GL N HSA ++ Sbjct: 231 LIISLVDSHWRTARLTDNLQQLNRQLELQARFDALTGLANRHQMDIRLQDCLHSALLN-- 288 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + ++VF DID+FK++ND +GH VGD+++ ++ ++ + + RLGG+ F Sbjct: 289 ---KKSFAVVFLDIDHFKRVNDTWGHHVGDELLIAVAQRITARLTREVTLARLGGDAFIL 345 Query: 183 AALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC-HKEPISTIIYRA 240 +++ L L ++E+ + +S G ++ +T+SAG++ H E + + +A Sbjct: 346 LLPDYDDEK---LNLHLTPLLEDIRRPLSVCGHTLSVTLSAGVSLYPEHGETLHELKLKA 402 Query: 241 DQALYVAKKSGRN 253 D A+ K+ GRN Sbjct: 403 DAAMQHIKREGRN 415 >gi|223983595|ref|ZP_03633776.1| hypothetical protein HOLDEFILI_01057 [Holdemania filiformis DSM 12042] gi|223964440|gb|EEF68771.1| hypothetical protein HOLDEFILI_01057 [Holdemania filiformis DSM 12042] Length = 639 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 8/162 (4%) Query: 98 NRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFF--DIDYFKQINDNFGHPVGD 152 NR+ +L+++D ++GLL +A I L FF DID FKQ ND +GH GD Sbjct: 474 NRLQELAQLDEMTGLLTKTATRRHIEHLLKEKPDQLYAFFILDIDTFKQANDLYGHAFGD 533 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 VI + L F +GR+GG+EFA A L K + + + + Sbjct: 534 SVIEQFAAVLRTQFREQDMIGRIGGDEFAVFIPVPDLAWVKTRAQQLLKALHYT--HTAM 591 Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 G S ++ S GIA + + T+ +AD ALY++KK+GRN Sbjct: 592 GNSWGVSASIGIALTSREAQDFETLYRKADDALYMSKKNGRN 633 >gi|209550668|ref|YP_002282585.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536424|gb|ACI56359.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 601 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 24/222 (10%) Query: 51 FYI---GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107 FY+ GL F G E+ + ++ L+ + ++ L+E S RI ++ D Sbjct: 122 FYVDAEGLPSFIGAEWDVTADV-LLNAELAGQKMVAEARALALEE---SNARIEHVADHD 177 Query: 108 CLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+GL N L L ++ D+D FKQIND+ GH GD V+ + ++ Sbjct: 178 YLTGLPNRRLLDKRLAELPADRSITTLGVLHLDLDQFKQINDSHGHAAGDAVLRAAALRI 237 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND----LRKIIENSQINISSGPSIH 217 V R+GG+EF + S+ E ++ +D LRK I Q + SG SI Sbjct: 238 TAAIPANGMVARVGGDEFVIVLVNFSDLAELKLITDDLQRRLRKKIRFGQEMLQSGASIG 297 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ S R +++ +D ALY AKK GRNRV F+ Sbjct: 298 VSWSGDRRAR-------SLLAESDLALYQAKKLGRNRVEFFT 332 >gi|148262278|ref|YP_001228984.1| response regulator receiver modulated diguanylate cyclase [Geobacter uraniireducens Rf4] gi|146395778|gb|ABQ24411.1| response regulator receiver modulated diguanylate cyclase [Geobacter uraniireducens Rf4] Length = 309 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 16/180 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140 ++ EL S + LS D L+ L N + +L + LS+V DID+FK Sbjct: 126 ALQDELKRSNELLKDLSNTDPLTHLHNRRYLMEALEREFLRASRKGDGLSLVLLDIDHFK 185 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ++ND +GHP GD V+ ++ L + R GGEEF +S A A R Sbjct: 186 KVNDTYGHPEGDNVLVAVASLLQNMVRRYDVSARYGGEEFVVVLPETSLHHALQFAERCR 245 Query: 201 KIIENSQINISSGPSIH---ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ +IS G ++ IT+S G+A + + ++ +AD+ALY AK+ GRNRV Sbjct: 246 VAVQ----DISFGGALKGLTITVSLGVASYPSGKVDCVDSLFRQADEALYRAKQGGRNRV 301 >gi|119470913|ref|ZP_01613497.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium TW-7] gi|119445935|gb|EAW27215.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium TW-7] Length = 695 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 80/140 (57%), Gaps = 4/140 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 +EK ++ F D+D FK+IND+ GH GDKV+ +++L +GRLGG+EF + Sbjct: 295 DEKAAVFFLDLDDFKKINDSLGHEAGDKVLIETANRLQRALRKADTIGRLGGDEFIILSK 354 Query: 186 GSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQA 243 G S Q+ A+ + K+++N + + G + +TIS G+A + + +S ++ AD A Sbjct: 355 GISTQQNAVGIAE--KLLQNFREPFTIEGRELMLTISIGVAMFPDNGKSVSDLLRNADTA 412 Query: 244 LYVAKKSGRNRVVCFSDIEN 263 +Y AK GRN F++ N Sbjct: 413 MYQAKALGRNTYSFFTNQMN 432 >gi|94263455|ref|ZP_01287268.1| GGDEF:GAF:Histidine kinase, HAMP region [delta proteobacterium MLMS-1] gi|93456185|gb|EAT06324.1| GGDEF:GAF:Histidine kinase, HAMP region [delta proteobacterium MLMS-1] Length = 595 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 22/188 (11%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIV 132 LL ++ I E+ ++ R+ +L+ D L+GL + +++ + + S++ Sbjct: 409 LLAAVAEQI--EITLANARLYRLAITDGLTGLYSKRYCETAINKFRDTHAADQGRLFSVL 466 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---AAAALGSSE 189 D+D+FK +ND GHPVGD+V+ L++ + R GGEEF A + ++E Sbjct: 467 MLDLDHFKLVNDTHGHPVGDEVLIQLAELIRGSIRQDDIACRYGGEEFIILVAEGIKAAE 526 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITIS---AGIAERCHKEPISTIIYRADQALYV 246 Q +A L + + SG + TIS AG E H + + +I ADQALY Sbjct: 527 Q----IAERLCRAVAEHVFRCRSGLELRCTISIGGAGFPE--HGQNAAEVIAAADQALYQ 580 Query: 247 AKKSGRNR 254 AK GRNR Sbjct: 581 AKNGGRNR 588 >gi|28875472|gb|AAO59956.1| putative sensor kinase [uncultured bacterium] Length = 237 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%) Query: 107 DCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +L + +N+ +S + DID+FK +ND FGH GD VI ++ Sbjct: 73 DPLTGLRNRHHLEDTLRTQMGQAIHNQTPISCLMIDIDHFKDVNDRFGHEAGDGVIKGVA 132 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + R GGEEF G E+EA +A D+ + + + HI Sbjct: 133 AIIQRAIRDSGMAFRYGGEEFLVLLSGMGEEEANRMATDIYNGVHALTLRFGTSDISHID 192 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S G+A ++ AD ALY AK+ GR+R+V F Sbjct: 193 VSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSFG 232 >gi|114049157|ref|YP_739707.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113890599|gb|ABI44650.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 608 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 10/181 (5%) Query: 90 LKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDN 145 L++ +S N ++ ++ D L+GL N F +L + ++ + ++ DIDYFK ND Sbjct: 426 LQQALVSVNTQLRVMAETDELTGLSNRRPFTQTLEALLQQRAPIGLLMLDIDYFKSYNDT 485 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD+ + ++ L+ P+ + R+GGEEFA + + +AN L + Sbjct: 486 YGHLEGDEALRRVAQALMQSGILPLDSLLARIGGEEFAIILEHITPIQLEAIANQLCYQV 545 Query: 204 ENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I SS P IT+S G +K +S ++ RAD LY AK GRN VV S Sbjct: 546 AALDIPHSSSPKGKITLSIGGVYLPLATINKLTLSEVLRRADICLYRAKDQGRNTVVIDS 605 Query: 260 D 260 + Sbjct: 606 N 606 >gi|115524460|ref|YP_781371.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] gi|115518407|gb|ABJ06391.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] Length = 779 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 15/182 (8%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 + ++ +L+ D L+GL N S F E+ +++ D+D FK++ND+ GH Sbjct: 331 AEEQLQKLAYYDPLTGLPNRSLFRRKAEDALERYLHGGGEAAVMLLDLDRFKEVNDSLGH 390 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIEN 205 GD+++ ++ + V G + RLGG+EF ALG +E EA LA D+ + + Sbjct: 391 AAGDELLDKVAHVISRVLGNRHLLARLGGDEFGIIVTDALGRAEIEA--LARDIITAV-S 447 Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 I +S G + I S GIA + IS ++ AD ALY AK++GR R F + + Sbjct: 448 EPIALSRG-EVAIGTSVGIAGIPRDGDTISDLLRNADLALYRAKEAGRGRFQFFEEDMST 506 Query: 265 TC 266 T Sbjct: 507 TV 508 >gi|323493103|ref|ZP_08098235.1| diguanylate cyclase/phosphodiesterase domain 2 [Vibrio brasiliensis LMG 20546] gi|323312664|gb|EGA65796.1| diguanylate cyclase/phosphodiesterase domain 2 [Vibrio brasiliensis LMG 20546] Length = 325 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 17/165 (10%) Query: 99 RISQLSRIDCLSGLLNHSA----FISSLGSYNEKLS-IVFFDIDYFKQINDNFGHPVGDK 153 ++++L+ D L+G+LN A F + L + K S ++F DID FK +ND GH GD+ Sbjct: 152 QLAKLANSDPLTGVLNRIAIEDEFDNQLQKNHHKTSALIFIDIDNFKNVNDQSGHQAGDR 211 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-----ILANDLRKIIENSQI 208 ++ +++ LV V VGRLGG+EF G +QE A L N++ I NS Sbjct: 212 LLIEIAEGLVRVAPNNARVGRLGGDEFVILC-GDCKQEQARQLCTTLLNEITPSI-NSNN 269 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 N G SI + +G++ + I RADQA+Y K +G+N Sbjct: 270 NAEIGFSIGACLFSGVSHE-----FADIYQRADQAMYDVKNNGKN 309 >gi|315637576|ref|ZP_07892783.1| diguanylate cyclase/phosphodiesterase [Arcobacter butzleri JV22] gi|315478167|gb|EFU68893.1| diguanylate cyclase/phosphodiesterase [Arcobacter butzleri JV22] Length = 851 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N F I +N +++ D D FK INDNFGH GD ++ ++ Sbjct: 436 DPLTDLFNQRVFNDMMRYEIKRAQRHNYSFALMVIDCDNFKPINDNFGHSFGDTLLQTVA 495 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GG+EF +E+EA I+AN + K + +I G +I IT Sbjct: 496 STLKKEKRDEDIVARYGGDEFTIILPECTEKEAMIVANRISKKMATEKIVAPDGSNIGIT 555 Query: 220 ISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS GI H + AD +Y AK+ G+N + Sbjct: 556 ISIGICVYPTHTTSQKDMFIIADSMMYQAKEEGKNAI 592 >gi|171318694|ref|ZP_02907837.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] gi|171096100|gb|EDT41026.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] Length = 469 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 8/178 (4%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S L+EL + + L+ D L+G N FI + + S++ D+D FK Sbjct: 291 SALQELQRTNQTLEHLAATDPLTGASNRRKFIECVEAEIARAKRDGAPFSLLALDLDNFK 350 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH VGD+V+ + V R+GGEEF + A + +R Sbjct: 351 WINDCYGHQVGDRVLQGFVQTCLDAIRPYDDVARVGGEEFMVLLPRADPDAALAVGERIR 410 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 I + G S+ IT+S GI++ I ++ ADQ LY AK+ GRN V+ Sbjct: 411 SAIAGTPFAREIGRSVSITVSIGISQFGKDGHTIDALLRAADQRLYRAKRRGRNCVIA 468 >gi|188581410|ref|YP_001924855.1| diguanylate cyclase [Methylobacterium populi BJ001] gi|179344908|gb|ACB80320.1| diguanylate cyclase [Methylobacterium populi BJ001] Length = 417 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 24/184 (13%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R++ LS D L+ L N F LG+ + L ++ DID+FK++ND GH G Sbjct: 221 RLTVLSETDSLTALSNRRHFTERLGAAWGLAGEQDGWLGVILIDIDHFKRLNDTAGHAEG 280 Query: 152 DKVIAFLSDQL---VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 D+ + ++ L V +G R GGEEFA G+ +A + +R + + I Sbjct: 281 DRCLVAVAAALQTSVEAWGG--LAARYGGEEFAVLLPGADPVQARAVGEVVRAAVADLAI 338 Query: 209 N----ISSGPSIHITISAGI-AERCHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259 +++ P +T+S G+ A R +S ++ AD ALY AK GRNRV F Sbjct: 339 RHPGLVANRP---VTVSVGVTAARGRTRDFGIQVSDLLKAADFALYAAKNEGRNRVESFL 395 Query: 260 DIEN 263 N Sbjct: 396 PAAN 399 >gi|153801619|ref|ZP_01956205.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|153829652|ref|ZP_01982319.1| GGDEF family protein [Vibrio cholerae 623-39] gi|229527813|ref|ZP_04417204.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae 12129(1)] gi|124122875|gb|EAY41618.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|148874880|gb|EDL73015.1| GGDEF family protein [Vibrio cholerae 623-39] gi|229334175|gb|EEN99660.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae 12129(1)] Length = 359 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 19/164 (11%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G LN L NE I DID+FK +ND +GH GDKVI Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237 Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 Q+V + T + RLGG+EF +S +A ++ + + I+ + Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+AE + RADQALY +KK G+NRV Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRADQALYHSKKMGKNRV 333 >gi|113970559|ref|YP_734352.1| diguanylate cyclase [Shewanella sp. MR-4] gi|114047793|ref|YP_738343.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113885243|gb|ABI39295.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113889235|gb|ABI43286.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 312 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 16/169 (9%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +L+ D L+ L N AF + LG + LS + FDID+FK+IND++GH +GD + Sbjct: 142 ERLAHTDELTQLYNRRAFFN-LGRQIAQQAQQPLSFIMFDIDHFKRINDHWGHAIGDAAL 200 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ + + RLGGEEF + ++A +A +R + +++ G S Sbjct: 201 IHIARLTQTKLSSSDILARLGGEEFGLILPNTHHEQAWQVAEAIRHGFDTQPLHL-DGHS 259 Query: 216 IHITISAGIA-----ERCHKEPISTIIY----RADQALYVAKKSGRNRV 255 I T S GI+ + H + T++ ADQA+ AK++GRN+V Sbjct: 260 IRCTASFGISSIILPKINHLDEAQTLLESLFNNADQAMMQAKRAGRNQV 308 >gi|330950714|gb|EGH50974.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7] Length = 334 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAVREQTQLSLLMIDVDYFKPYNDNFGHLEGD 224 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + I ++ Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHM 284 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVC 257 + P +T+S G+A + + + +I AD+ LY AK +GRN+V Sbjct: 285 APAPGSSLTVSIGVATVTPQLGMHSRQLILDADKGLYQAKNNGRNQVAA 333 >gi|308048690|ref|YP_003912256.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] gi|307630880|gb|ADN75182.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] Length = 530 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 12/179 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 +EL + ++ QL+ D L+ + N F L S L+++ D+DYFK N Sbjct: 339 EELDEANRKLIQLTLTDSLTEVGNRRQFDQWLSSEWDAGRRSGRPLTLMLVDVDYFKSFN 398 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 DN+GH GDK + ++ L P V R GGEEF A L + +LA L Sbjct: 399 DNYGHRAGDKALRCIAATLRERLHRPRDLVARYGGEEF-AILLPETSDNVPLLAQALCDA 457 Query: 203 IENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + I G +T+S G+A ++ ++ ADQALY AK GRNRV+ + Sbjct: 458 VAELGIRHECGGETGVVTVSIGVATLVPAVEQQAEHLVELADQALYRAKAEGRNRVISY 516 >gi|326316035|ref|YP_004233707.1| response regulator receiver modulated diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372871|gb|ADX45140.1| response regulator receiver modulated diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 334 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 11/180 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 +EL ++ R++++ +D L+GL+N F L S L+++ D+D+FK+ N Sbjct: 144 EELHLANQRLNEMVEVDTLTGLVNRRGFDRILHSEILAARRDGMPLTLMLCDLDHFKRFN 203 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D GH GD + + L V P V R GGEEFA + A A L K+ Sbjct: 204 DAVGHVQGDACLREVGRLLKEVCVRPRDVAARYGGEEFALILPNTPRSGAMTFARALGKL 263 Query: 203 IENSQINISSGP-SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259 + I P +T+S GI + S ++ RAD+ALY AK GR R F Sbjct: 264 VSQRAIAHPDSPLGASLTVSGGITTCVPDDSTSAEAMLMRADEALYAAKAQGRARFFSFE 323 >gi|253996466|ref|YP_003048530.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylotenera mobilis JLW8] gi|253983145|gb|ACT48003.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylotenera mobilis JLW8] Length = 481 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 21/183 (11%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 + ++ L+ D L+G+ N S F ++L ++ L++++ DID+FK IND+ G Sbjct: 138 VEEQKLRSLASNDTLTGIRNRSYFNANLPEAMARSKRSDKNLALMYLDIDHFKSINDSLG 197 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-----AALGSSEQEAAILANDLRKI 202 H GD ++ + +L V RLGG+EF A L + A + N+L Sbjct: 198 HEAGDSLLKEFATRLKATLREADIVSRLGGDEFTVIIEGIATLDDVSKVATNIINEL--- 254 Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN--RVVCFS 259 ++ N P+ IT S GIA + ++ AD+A+Y AK SGRN +++ F Sbjct: 255 ---NRGNWLDTPNFKITSSIGIAIYDGRVIDADKLVALADKAMYKAKHSGRNNFKILRFD 311 Query: 260 DIE 262 DIE Sbjct: 312 DIE 314 >gi|171320408|ref|ZP_02909444.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] gi|171094358|gb|EDT39429.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] Length = 520 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 17/205 (8%) Query: 68 NLSLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 + ++ I S L LG++ S+L ++ + + L+R D L+GL N +L Sbjct: 303 DRAIPIGSAMAVLALGFVGLSLLLDVQLRKRHRAETELQALARTDGLTGLDNRRMLDVTL 362 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174 + LS++F D+D+FK+ ND GH GD +A + + P + R Sbjct: 363 AREWRRAARSQHALSLLFVDVDHFKRYNDTQGHQAGDDALAAVGRCIAGCLRRPADYAAR 422 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--- 231 GGEEF A +A +R I + I +G S +T S G+ C+ E Sbjct: 423 YGGEEFVVVLPNVDTNGAVTIAEAIRTGILDLGIRHDTGVSGRLTASIGVTT-CYPERDD 481 Query: 232 PISTIIYRADQALYVAKKSGRNRVV 256 I + AD ALY AK GRN+VV Sbjct: 482 SIQAALKLADDALYRAKACGRNQVV 506 >gi|158334888|ref|YP_001516060.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acaryochloris marina MBIC11017] gi|158305129|gb|ABW26746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 705 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 20/167 (11%) Query: 107 DCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+GL + + F+ L N +++F D D FK IND+ GH +GD+++ + Sbjct: 264 DHLTGLPSRALFLDQLHRTLTRVNRQTNYLFAVLFLDCDRFKVINDSLGHAIGDQLLIEV 323 Query: 159 SDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKIIENSQINISSG 213 + +L + RLGG+EFA A +EQ A+ L +L K E G Sbjct: 324 AQRLTTALRPGDVIARLGGDEFAILLENIAGQDQAEQVASRLNRELEKAFE------LQG 377 Query: 214 PSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 +++I+ S GIA P + + R AD A+Y AK G++R V F Sbjct: 378 HTVYISASIGIALNSDHSPQAENLLRDADNAMYRAKALGKSRYVVFE 424 >gi|111025522|ref|YP_707942.1| hypothetical protein RHA1_ro08740 [Rhodococcus jostii RHA1] gi|110824501|gb|ABG99784.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 466 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 11/153 (7%) Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + A + + K++ + D+D FK +ND GH VGD + L+ Sbjct: 310 DPLTGLPNRALVHQQIDAALDTAPGSEPKVAALLIDLDEFKTLNDRLGHAVGDDALIRLA 369 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218 +QL V V R+GG+EF G++ E +I L I + Q+ S+G + Sbjct: 370 EQLQSVVRPTDTVARIGGDEFLIVCPGTTSVEESIA---LATRITDLQVGADSAGRPLRF 426 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 T S GIA +E T+I RAD A+Y AK +G Sbjct: 427 TASVGIALAGPQETRQTLIRRADAAMYHAKATG 459 >gi|77748680|ref|NP_643206.2| response regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 494 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 16/200 (8%) Query: 71 LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125 +V+ ++ +LLLG ++ L+ + + ++S + +D L+G+ N AF L Sbjct: 294 IVVAALGCTLLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQ 352 Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179 LS++ D+D+FK ND +GH GD + ++ + + R GGEE Sbjct: 353 DAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEE 412 Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235 F + A LA+ +R + E +++SS S H+T+S G A + P+S Sbjct: 413 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNA 472 Query: 236 IIYRADQALYVAKKSGRNRV 255 I++ AD ALY AK+ GRNR Sbjct: 473 IVHDADSALYRAKQKGRNRT 492 >gi|86146254|ref|ZP_01064579.1| GGDEF family protein [Vibrio sp. MED222] gi|85835965|gb|EAQ54098.1| GGDEF family protein [Vibrio sp. MED222] Length = 477 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 16/198 (8%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQ-------LSRIDCLSGLLNHSAFISSLG 123 + ++ TISLLL YI ++E Y I + L+ D L+ + N AF L Sbjct: 281 IALVGTTISLLLSYIVKLQVQEKVRLYKMIDERTEELRFLANHDSLTEIYNRRAFNKVLD 340 Query: 124 SY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 ++ S++ FD+D FK IND FGHP GD ++ + + V R+GG+EF Sbjct: 341 KAIQGDKPFSLIGFDVDKFKGINDQFGHPAGDALLVHVIQLISGSLKEGDHVFRMGGDEF 400 Query: 181 AAAALGSSEQEAAILANDLRKIIEN-SQINIS-SGPSIHITISAGIAERCHKEPISTIIY 238 + SS E LA L I++ S+ + G + T+S G R KE I ++ Sbjct: 401 ---GIISSVIEHDALARYLECILDTVSESHCEHKGQLLSCTLSIGATIRS-KEDIEELLQ 456 Query: 239 RADQALYVAKKSGRNRVV 256 + D LY++K +GRNRV Sbjct: 457 KTDSMLYLSKSNGRNRVT 474 >gi|118579804|ref|YP_901054.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] gi|118502514|gb|ABK98996.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] Length = 454 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 SY+ + ID LSGL N + +G ++ +L+++F D+D FKQ+ND GH Sbjct: 280 SYSLAKDMLFIDDLSGLYNQRYLEVALEREMKRIGRFSSQLAVLFLDMDSFKQVNDTHGH 339 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VG +V+ + L + V R GG+E+ A + +S AA +A +R ++ + Sbjct: 340 LVGSRVLKEMGTLLRLSVRDVDVVIRYGGDEYTAILVETSPAIAANVAERIRSMVASHVF 399 Query: 209 NISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFS 259 G I +T S G + C E T ++ ADQA+Y K G+N VV F+ Sbjct: 400 LADEGYDIRLTCSIGYS--CCPEDALTKEELLEMADQAMYTGKGRGKNCVVRFT 451 >gi|294626301|ref|ZP_06704904.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599447|gb|EFF43581.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 515 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 16/200 (8%) Query: 71 LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125 +V+ ++ +LLLG ++ L+ + + ++S + +D L+G+ N AF L Sbjct: 315 IVVAALGCTLLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQ 373 Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179 LS++ D+D+FK ND +GH GD + ++ + + R GGEE Sbjct: 374 DAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRHSEDLAARYGGEE 433 Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235 F + A LA+ +R + E +++SS S H+T+S G A + P+S Sbjct: 434 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNA 493 Query: 236 IIYRADQALYVAKKSGRNRV 255 I++ AD ALY AK+ GRNR Sbjct: 494 IVHDADSALYRAKQKGRNRT 513 >gi|297582608|ref|YP_003698388.1| diguanylate cyclase [Bacillus selenitireducens MLS10] gi|297141065|gb|ADH97822.1| diguanylate cyclase [Bacillus selenitireducens MLS10] Length = 335 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 11/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL +S + + D L+GL N ++ I+ +++ D+D+FK+IN Sbjct: 166 RELELSLEQQRDAASTDRLTGLRNRASLEDLLEMEINRAVQEEAVFAVILMDMDHFKRIN 225 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD + L++ L+ VGR GGEEF + E+ + LA R + Sbjct: 226 DTHGHQAGDSCLKELAELLIRQSRPTDIVGRWGGEEFLIICPNTDERGSKDLAESFRLAV 285 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + T S G+A + T+I RAD+ALY AK +GRNRV Sbjct: 286 SAYRFTKTGAQ----TASFGVAAFMTGDDGETLIGRADRALYRAKGAGRNRV 333 >gi|118474590|ref|YP_891782.1| GGDEF family protein [Campylobacter fetus subsp. fetus 82-40] gi|118413816|gb|ABK82236.1| ggdef family protein [Campylobacter fetus subsp. fetus 82-40] Length = 385 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 19/211 (9%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSA 117 LE + N LVI++ + L + + KEL + + +LS D L+ + N Sbjct: 179 LEMMSKRNKDLVIVNNELLELKKDLENKVQDRTKELIEANENLEKLSMTDQLTEMPNRRH 238 Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 + +L + LS++ D+DYFK++NDN+GH GD ++ ++ L T Sbjct: 239 AMKTLDLLWKENLDSDRGLSVLMIDLDYFKEVNDNYGHDAGDYILRLVARTLKESVRTDD 298 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 V RLGG+EF + + + +AN+L K I + ++ + SA I C Sbjct: 299 IVCRLGGDEFLVICPNTMLEGSIQVANNLLKDIHSLKV---KTKNCEWNGSASIGLACMS 355 Query: 231 EPI---STIIYRADQALYVAKKSGRNRVVCF 258 I S +I AD +Y AK+SG+N CF Sbjct: 356 PDIKNYSKLIKLADDKVYEAKQSGKN---CF 383 >gi|90420816|ref|ZP_01228722.1| putative response regulator with GGDEF domain [Aurantimonas manganoxydans SI85-9A1] gi|90335107|gb|EAS48868.1| putative response regulator with GGDEF domain [Aurantimonas manganoxydans SI85-9A1] Length = 455 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 104/216 (48%), Gaps = 22/216 (10%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH---S 116 G+ +V S+ +++ + LL + + EL + R+ +L+R D L+G+ N + Sbjct: 231 GIGATVVARRSMTLLA-QKAFLLDLRDKTRVAELAAANGRLEELARTDPLTGVANRRWMT 289 Query: 117 AFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKV---IAFLSDQLVVVFGTPM 170 + +L S +++ DID FK +ND GH GD+ +A L V G Sbjct: 290 EILDALWSAQRTRVSGALLMCDIDDFKNLNDRLGHGEGDRCLIEVAKLIGDCVRRDGDK- 348 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCH 229 V R GGEEF + A + A +R+ I ++ + N S + +TIS G+A Sbjct: 349 -VARYGGEEFLVLLRDVDTRAALVTAERIRRRIGDAGLANPGSRVASRVTISIGVA---A 404 Query: 230 KEP------ISTIIYRADQALYVAKKSGRNRVVCFS 259 EP + RAD ALY+AK+SGRNRVV + Sbjct: 405 LEPGDGDVTPQQLQERADAALYLAKQSGRNRVVLYG 440 >gi|323488742|ref|ZP_08093983.1| GGDEF/HD domain protein [Planococcus donghaensis MPA1U2] gi|323397621|gb|EGA90426.1| GGDEF/HD domain protein [Planococcus donghaensis MPA1U2] Length = 372 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 7/164 (4%) Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 S D L+ L N F I + S + ++I+ D+DYFK ND GH GD V+ + Sbjct: 201 SNQDPLTQLANMRFFRKEIQTFVSNDVPIAIIMLDVDYFKSYNDAHGHQKGDAVLRSIG- 259 Query: 161 QLVVVFGTPM-FVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIENSQINISS-GPSIH 217 QL+ P FV R GGEEF A E++A +A +R IE + P + Sbjct: 260 QLMKDNTRPNDFVARYGGEEFIICIAQPFDERKALEIAEKVRTEIERYPFDGQELQPKGN 319 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +T+S GI+ + + +I ADQAL+ +K+SGRN+V + ++ Sbjct: 320 LTVSLGISLYSANKTLDQLIGEADQALFQSKRSGRNQVTVYIEV 363 >gi|310778241|ref|YP_003966574.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] gi|309747564|gb|ADO82226.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] Length = 568 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 2/144 (1%) Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 S ++ L ++ L + FDID+FK INDN+GH GD ++ +S + GR Sbjct: 423 SKELTKLKRHHLSLCCMIFDIDHFKSINDNYGHLAGDYILEAISKIIHDKIRNEDIFGRY 482 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIS 234 GG+EF A + + I+A + K I I + SI +T+S GI+ + I Sbjct: 483 GGDEFLIALPETELKAGKIVAEKIIKTIAEETF-IFNDTSIKVTLSIGISALDDSFDTIE 541 Query: 235 TIIYRADQALYVAKKSGRNRVVCF 258 I +D ALY+AKK+GRNRV + Sbjct: 542 AAIKNSDSALYLAKKNGRNRVEVY 565 >gi|156976945|ref|YP_001447851.1| sensory transduction protein kinase [Vibrio harveyi ATCC BAA-1116] gi|156528539|gb|ABU73624.1| hypothetical protein VIBHAR_05730 [Vibrio harveyi ATCC BAA-1116] Length = 393 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 80/309 (25%), Positives = 137/309 (44%), Gaps = 66/309 (21%) Query: 8 FLSIWLCHEKNLESFSPHTFMIYFSIF---------------FSIFIATVIFIAN----- 47 FL+++L +++ +S + T+++ S+F F + ++FI Sbjct: 85 FLAVFLFNKEGFDSKATLTYVLMLSMFVFWSYVTLTYYVEGGFEEWTNGILFIVPTVSKL 144 Query: 48 ---IFLFYIGLTPFYGLEYILVENLSLVIISITISLLL-----------GYISGSI--LK 91 + L+ IG+ F G ILV + +I ++T S ++ YIS ++ L Sbjct: 145 PLVLVLYCIGIVCFLG---ILVLKKNKIIHAMTYSAMVLASATFIFFDVQYISSTMFTLT 201 Query: 92 ELFI---SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 L I S + QL+ D L+ + + A L K +I D+D+FK+ ND +GH Sbjct: 202 GLLIIIYSTSASHQLAFTDSLTLIPSRRALDLDLKHMGRKFTIAMLDVDHFKKFNDTYGH 261 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII----- 203 GD V+ ++ +L+ G R GGEEF G ++ ++R++I Sbjct: 262 DTGDDVLKMVASRLMKTQGGAK-AYRFGGEEFTIVFKGKYTEDCEAHLEEVRELIAQYDM 320 Query: 204 ----------ENSQINISSG------PSIHITISAGIAE-RCHKEPISTIIYRADQALYV 246 +N Q G ++ +T S G+A+ R + P + +I AD ALY Sbjct: 321 ILRDQDNRPDDNKQGRKKRGNAESKQKTVSVTASFGVADSRSARNP-ADVIKLADDALYK 379 Query: 247 AKKSGRNRV 255 AKK+GRN V Sbjct: 380 AKKAGRNCV 388 >gi|146281321|ref|YP_001171474.1| hypothetical protein PST_0935 [Pseudomonas stutzeri A1501] gi|145569526|gb|ABP78632.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 261 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 8/162 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 + + S +D L+G+ N L +E+ L++V DID FK IND++GH VGD Sbjct: 96 LREASMLDSLTGIANRRLLTERLREESERAKRYGRPLALVMLDIDRFKIINDDYGHDVGD 155 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + + GR GGEEF + Q A + L I + ++ Sbjct: 156 RVLIEVVRVMESEIREHDLCGRWGGEEFLILMPECTAQMAQTVLGRLGASIAALGVRVNE 215 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T S GIAE +E S I RAD AL AK+SGRNR Sbjct: 216 -DLLGVTASMGIAELRPEETYSNTINRADLALLRAKRSGRNR 256 >gi|148555835|ref|YP_001263417.1| diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1] gi|148501025|gb|ABQ69279.1| diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1] Length = 547 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 20/172 (11%) Query: 101 SQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 S+L+ D L+GLLN A +SLG ++++ D+D+FK +ND GH GD Sbjct: 96 SELATSDPLTGLLNRRALGESGARLVDASLGQ-RRPVAMLMIDLDHFKSVNDLHGHLAGD 154 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LAND-LRKIIENSQIN 209 +++ S +V RLGG+EFA A +Q AA+ +A+ L +I E I Sbjct: 155 QLLRAASAAIVAPLPPHALAARLGGDEFACAFAFDPDQPAAVDHVADAILARIAEPFLIG 214 Query: 210 ISSGPSIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G I S GIA C I T++ R+D ALY AK++GRN+ F Sbjct: 215 ---GVEARIGASLGIARTEAGCRT--IDTLMRRSDIALYAAKRAGRNQRAWF 261 >gi|323495037|ref|ZP_08100126.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] gi|323310694|gb|EGA63869.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] Length = 487 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 10/168 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVG 151 + ++ +L+ D ++GLLN + L + ++ +++ FDID FKQIND +GH VG Sbjct: 323 VEHDYFKELAATDPMTGLLNRRGLQAYLKNNTQQGVYVALGVFDIDDFKQINDTYGHDVG 382 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAILANDLRKIIENSQINI 210 D+VI +++ Q+ + R+GGEEF G++ E + ++ ++S + Sbjct: 383 DEVIKYMAKQISASIRSSDAAARIGGEEFVVYMTGNAIEPLKRSMLRVRNEVCQHSASAL 442 Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SG T+S G + E + + AD+ LY AK SG++++V Sbjct: 443 ESG----FTVSGGAQVIEAQNAGSFDLLFKAADEKLYHAKNSGKDQLV 486 >gi|317403736|gb|EFV84221.1| hypothetical protein HMPREF0005_02802 [Achromobacter xylosoxidans C54] Length = 525 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 14/182 (7%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYF 139 GS L E R QL+ D L+GL N S +++ S +++I+ D+D+F Sbjct: 346 GSALTETSRMLARAQQLAYHDPLTGLCNRVLFGELASQTLAAAASARRQVAILAIDLDHF 405 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K +ND GH +GD V+ F++ ++ F + R GG+EF S + A AN+L Sbjct: 406 KDVNDTQGHAMGDAVLEFVAQRMKTTFRASDIIARFGGDEFFVLMDDSDAETALSAANNL 465 Query: 200 RKIIENSQINISS--GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + + + G S+ I+I +++++ AD ALY AK +GR + + Sbjct: 466 IRSLSRPYPGVEATVGASVGISIFP-----ADGSDLASLLSEADAALYAAKDAGRGQALR 520 Query: 258 FS 259 S Sbjct: 521 RS 522 >gi|229137427|ref|ZP_04266038.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26] gi|228645985|gb|EEL02208.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26] Length = 569 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTNNHTQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|167746443|ref|ZP_02418570.1| hypothetical protein ANACAC_01153 [Anaerostipes caccae DSM 14662] gi|167653403|gb|EDR97532.1| hypothetical protein ANACAC_01153 [Anaerostipes caccae DSM 14662] Length = 348 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 3/175 (1%) Query: 85 ISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI-VFFDIDYFKQI 142 +S ++ ++ NR +S L+ D L+GLL+ AF+ ++ V DID FK + Sbjct: 172 LSAAVSRQELQDENRSLSTLANYDQLTGLLSRHAFLKRAEHCQASSAVLVLSDIDDFKVV 231 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GDK+++ ++ + G + V R GGEEF + + + +L Sbjct: 232 NDTWGHSCGDKILSETAELIRSFLGGNVDVCRWGGEEFVFLFRDTPLNDVLVKLQELCDT 291 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +HIT++ G++ II AD+ +Y K G+NRVVC Sbjct: 292 VAGHTF-CCDDKKLHITMTFGVSPSGEGASPEEIIALADRQMYKGKTEGKNRVVC 345 >gi|153831983|ref|ZP_01984650.1| ggdef family protein [Vibrio harveyi HY01] gi|148871981|gb|EDL70804.1| ggdef family protein [Vibrio harveyi HY01] Length = 513 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 13/163 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + +++ +D L+ LLN F +L Y + K S+V FDID FK IND +GH GD+ + Sbjct: 353 LKRMAELDPLTQLLNRRVFNDNLLHYINGDVKFSLVGFDIDRFKLINDKYGHLAGDEALL 412 Query: 157 FLSDQLV---VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ +LV ++ G + R GG+EF + + ++E A + LR I+ +S + S Sbjct: 413 HVT-KLVNANLLDGDRFY--RAGGDEFCILSQVTDKEELATYLDKLRGIVASSPFDYEST 469 Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 P I S I HK E ++ ++ D LY +KK+GRN V Sbjct: 470 P---IICSLSIGAAVHKGEDPESLFHKMDVQLYQSKKNGRNSV 509 >gi|120556297|ref|YP_960648.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Marinobacter aquaeolei VT8] gi|120326146|gb|ABM20461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter aquaeolei VT8] Length = 867 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 16/176 (9%) Query: 102 QLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 QL R+ D L+GL N I L++VF D+D FK++ND GH VG Sbjct: 314 QLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKKVNDQHGHAVG 373 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DK+++ LS ++ V + RLGG+EF A + + ++ L ++IE + + Sbjct: 374 DKLLSVLSRRMTQVLREDDTLARLGGDEFVAILVDLPDSSVSVPI--LERLIEVASQPVP 431 Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENN 264 G ++ ++ S G++ E I ++ +ADQA+Y AK++G+NR F D E + Sbjct: 432 IGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVF-DTEKD 486 >gi|288957253|ref|YP_003447594.1| two-component response regulator modulated diguanylate cyclase [Azospirillum sp. B510] gi|288909561|dbj|BAI71050.1| two-component response regulator modulated diguanylate cyclase [Azospirillum sp. B510] Length = 350 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 17/194 (8%) Query: 78 ISLLLGYISGSILKELFISYNR--------ISQLSRIDCLSGLLNHSAFISSLGS----- 124 ++ L Y + L++ NR +++L+ +D L+G+ N F+ + Sbjct: 155 VTALRAYADMAALEQRLTETNRALEEATVRLNRLATLDPLTGVWNRRRFLDLAAAELARA 214 Query: 125 --YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 Y L++ D+D F+ +ND G+ +GD V+ + ++ + R GG+EF Sbjct: 215 RRYGRPLALFLLDLDGFEAVNDAHGNTIGDAVLRAVVKRVRAALRISDHIARSGGDEFVV 274 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRAD 241 + AA++A +R + S + +I +T S GIA EP + ++RA+ Sbjct: 275 LLPETDAAGAAVVAERVRAALAGSPVAAEER-AIPVTASIGIASWLPDEPGVEQTLHRAE 333 Query: 242 QALYVAKKSGRNRV 255 +AL+ AK+ GR+RV Sbjct: 334 RALHAAKRGGRDRV 347 >gi|224475887|ref|YP_002633493.1| hypothetical protein Sca_0394 [Staphylococcus carnosus subsp. carnosus TM300] gi|222420494|emb|CAL27308.1| putative membrane protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 355 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 20/208 (9%) Query: 63 YILVENLSLVIISITISLLLGYISGSI----LKELFISYNRISQLSRIDCLSGLLNHSAF 118 Y L E + L+ IS ++ I+ SI + F R R D L+GL N F Sbjct: 147 YTLQEIIYLIPISFVVT-----IASSITFVDIWRFFTLVQRYESEDRYDYLTGLGNVKEF 201 Query: 119 ISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-M 170 L ++ L ++ DID FK +ND F H GD V+ +S QL++ + P + Sbjct: 202 DRYLNKMTDEADEKSTSLGLLLIDIDGFKDVNDAFTHRSGDAVLKQIS-QLLINYVPPNV 260 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 + R GGEEF+ LG S ++ LA +R +E S ++ I +++S GI Sbjct: 261 RIFRNGGEEFSVVVLGYSLDQSVKLAESIRAGVEQSTFHLPDKEVIKLSVSIGIGYLTAD 320 Query: 231 EPIS--TIIYRADQALYVAKKSGRNRVV 256 + S + AD L++AK GRN+V+ Sbjct: 321 DYKSQRKVFKDADDMLHMAKNEGRNQVM 348 >gi|75908637|ref|YP_322933.1| response regulator receiver modulated diguanylate cyclase [Anabaena variabilis ATCC 29413] gi|75702362|gb|ABA22038.1| response regulator receiver modulated diguanylate cyclase [Anabaena variabilis ATCC 29413] Length = 684 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 11/179 (6%) Query: 87 GSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138 G IL L +NR + L+ ID L+ + N L Y + +S ++D Sbjct: 506 GRILNRL--EHNRWLQNLAEIDTLTLVANRRKSTQELNHYLQWCHTHQQTMSFAVVELDG 563 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 KQIN N+GH VGD++++ L + L +F + VGR GG EF G ++ E + Sbjct: 564 LKQINYNYGHEVGDRILSQLGELLRQMFHSQDVVGRWGGTEFILGMAGITKGEGVRRLGE 623 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 L K + +S S H T SA + E +Y+ AD L AK SGR+RV+ Sbjct: 624 LLKTFRQIEFITTSNQSFHATFSAAVVEYPQDGDTLEALYQAADIVLNQAKTSGRDRVL 682 >gi|297568083|ref|YP_003689427.1| response regulator receiver modulated diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] gi|296923998|gb|ADH84808.1| response regulator receiver modulated diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] Length = 337 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 13/173 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 R+ +++ +D L+G+ N F L + ++I FDIDYFK ND+FGH Sbjct: 154 RRLQRMALVDGLTGIANRRNFDDFLDREWRRCQRDGQPIAICLFDIDYFKLYNDSFGHLQ 213 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAA--ILANDLRKIIENSQ 207 GD+V+ ++ L V P V R GGEEF L S+QE A ++ + KI E + Sbjct: 214 GDEVLKQVATALQQVASRPGDLVARFGGEEF-VFVLSGSDQEGAQLVVQRAIEKIRELAV 272 Query: 208 INISSGPSIHITISAGI-AERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258 ++ S + H+T+S GI A R H ++ AD+ALY AK+ N+VV Sbjct: 273 LHPQSPVNEHLTVSCGISAVRPHPGLYPNLLLDCADKALYEAKQIRNNQVVTL 325 >gi|291613922|ref|YP_003524079.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291584034|gb|ADE11692.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 1149 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 13/209 (6%) Query: 60 GLEYILVENLSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAF 118 G EYI E++ + +S ++ Y++ + E ++ RI +L D L+GL N + Sbjct: 680 GTEYI--ESVLISPVSQVDGRVMNYLAIKEDITEKRLTEERIEKLEHFDHLTGLPNRTQL 737 Query: 119 -------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 +S E+++++F D+D+FK IND GH +GD+++ ++ +L Sbjct: 738 NERFKYALSLAQRSGEQMTVMFLDLDHFKDINDTLGHSIGDQLLMDVAKRLKETLRDEDT 797 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK- 230 V R GG+EF G+ E AA +A L + + SQ + T S GIA H Sbjct: 798 VSRQGGDEFILILPGTDENGAAHVAAKLMEAV--SQAFQFEQHELVATCSIGIAIYPHDG 855 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFS 259 E T+ AD A+Y K GRN F+ Sbjct: 856 ENFETLSKNADTAMYRVKHDGRNGFCFFT 884 >gi|325294061|ref|YP_004279925.1| diguanylate cyclase [Agrobacterium sp. H13-3] gi|325061914|gb|ADY65605.1| diguanylate cyclase [Agrobacterium sp. H13-3] Length = 383 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 13/209 (6%) Query: 53 IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-KELFISYNRISQLSRIDCLSG 111 I L+ F+ +Y L+ I ++L S+L ++ ++ +R Q + D L+ Sbjct: 162 IELSEFFESDYAFYMQLAASIFGFLLAL-------SVLASQISVTVDRHLQAAEHDPLTD 214 Query: 112 LLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 +LN F + + +++ DID+FK+IND++GH GD V+ LSD L + Sbjct: 215 VLNRRGFDRRVPDFRSGTPIGAVIACDIDHFKRINDDYGHAAGDIVLIGLSDLLRKSARS 274 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 V R GGEEF G + A LAN +R + + S G + +T S G++ Sbjct: 275 DALVARFGGEEFVVFLPGHTAAAAGHLANAMRLNLLSLDWR-SRGVATKVTASFGVSAVA 333 Query: 229 HKE-PISTIIYRADQALYVAKKSGRNRVV 256 + I I RAD +LY AK+ GRN+VV Sbjct: 334 RGDHSIHDAIKRADDSLYAAKRGGRNQVV 362 >gi|307611531|emb|CBX01208.1| hypothetical protein LPW_29071 [Legionella pneumophila 130b] Length = 371 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 27/225 (12%) Query: 48 IFLFYIGLTPFYGL--EYIL-VENLS-LVIISITISLLLGYISGSILKELFISYN----- 98 +F FYI P Y + EY+ ++N + L I ++ ++L ++ ++ EL + Sbjct: 143 VFEFYI---PIYSISQEYVFFLDNTNHLFIFALIFTVLYHFLVQNLQYELLLKEQNYLLI 199 Query: 99 ----RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147 + LS D L+ L N S F + L + E +++ F D+D FK IND +G Sbjct: 200 ADKEKFHYLSHHDSLTNLPNRSYFHAHLQTLLENTDTTKEAITLYFMDLDKFKPINDEYG 259 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+++ S +L F F+ RLGG+EF A + A A LR E Q Sbjct: 260 HEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPLDHIAD-ALTLRIEQEFEQ 318 Query: 208 INISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKS 250 + +G +IH TIS GIA R K ++ AD+A+Y K+ Sbjct: 319 PFVINGQTIHCTISVGIANYPRNAKNA-EDLLKWADKAMYDNKRK 362 >gi|291537408|emb|CBL10520.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis M50/1] Length = 547 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 14/212 (6%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118 Y L + E ++ I+ LL Y+ + KE ++ Q++ D L+G+ N A Sbjct: 340 YSLRVHIQEKHETGELAAGINELLDYVEQADRKEKE-RQQKLLQMAENDPLTGIKNKKAI 398 Query: 119 ISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPM 170 + S +E+++ F DID F+ N N+GH GD VI F++ L + G Sbjct: 399 EKEMLSMVQRAVESHEQITFGFVDIDDFRDYNTNYGHQEGDAVIQFVAQTLKENIHGA-- 456 Query: 171 FVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIA-ERC 228 VGR+GG+EFA G E E A+ + +I+ +N +G + + S GI + Sbjct: 457 -VGRIGGDEFAFCYAGELEPERIRHNADKILEILRTQHVNEQTGEVLPVPCSIGIVMSQG 515 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +I RAD A+Y AK++G+N V D Sbjct: 516 DTLDYTQLIRRADLAMYQAKENGKNTFVLNVD 547 >gi|261251380|ref|ZP_05943954.1| GGDEF family protein [Vibrio orientalis CIP 102891] gi|260938253|gb|EEX94241.1| GGDEF family protein [Vibrio orientalis CIP 102891] Length = 351 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 7/151 (4%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D ++G N + L +K IV DID FK +ND++GH VGDKVI + D + Sbjct: 179 DAMTGAYNRHELPTILTRTLKKHPCSCIVIIDIDNFKSVNDHYGHDVGDKVIIRIVDIIR 238 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + RLGG+EF G + L N L K I ++ + +TIS+G Sbjct: 239 AHTSDEELLFRLGGDEFLLVVQGQEQDSVLTLMNRLNKKIRQAEY----PQDLSMTISSG 294 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNR 254 IA+ E I + RAD ALY +K GR+R Sbjct: 295 IAQSQPFEEIKEWMKRADLALYQSKHQGRDR 325 >gi|261251157|ref|ZP_05943731.1| GGDEF family protein [Vibrio orientalis CIP 102891] gi|260938030|gb|EEX94018.1| GGDEF family protein [Vibrio orientalis CIP 102891] Length = 655 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 22/181 (12%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S LKE+ R+ L+ D L+GL N + L NE +++++ D+D FK Sbjct: 481 SNLKEM----ERLEYLAHHDSLTGLANRAKLYRVLDETLTIERDTNEGVALLYLDLDGFK 536 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL- 199 +ND +GH GD+V+ ++++L+ +F + V RL G+EF ++ + + +A +L Sbjct: 537 GVNDTYGHDAGDEVLKQVAERLLSMFTSHDLVARLSGDEFVVLVTKTTVTKISAIAEELI 596 Query: 200 ----RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R I+ ++ + G SI + SA ++E + + AD A+Y AK SG+ R Sbjct: 597 DVIQRDIVYRGRV-LKVGASIGVHYSANLSEN-----LDQWLKAADTAMYQAKSSGKGRY 650 Query: 256 V 256 V Sbjct: 651 V 651 >gi|162447311|ref|YP_001620443.1| membrane-anchored GGDEF domain-containing protein [Acholeplasma laidlawii PG-8A] gi|161985418|gb|ABX81067.1| membrane-anchored GGDEF domain protein [Acholeplasma laidlawii PG-8A] Length = 358 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 14/161 (8%) Query: 107 DCLSGLLNHSAFI-----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL N + + +YN + ++ FDID FK+ NDN+GH GD+V+ + Sbjct: 202 DFLTGLPNRRSLFEYAQKDTFKAYNY-MGLMMFDIDRFKKYNDNYGHLNGDQVLTEFARL 260 Query: 162 LVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L V T P+ R GGEEF + E LAN ++ ++ ++ + P IT Sbjct: 261 LEVFSKTYPVKFYRYGGEEFIGITYNLDKLEIINLANHIK--MDTFKLKV---PFEQITT 315 Query: 221 SAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S G + ++ I+ +I +AD+ALY K SGRN+V+ + Sbjct: 316 SIGVTVTDKTDNIDINDLIEQADKALYSGKNSGRNKVIFYE 356 >gi|117925126|ref|YP_865743.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] gi|117608882|gb|ABK44337.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] Length = 754 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 11/174 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +L+ D L+ L N F L + +++++ F D+D FKQ+ND GH G Sbjct: 307 KLERLAYYDALTQLPNRMLFHDRLEHEFYNAQRHRKQVAVFFIDLDRFKQVNDTLGHSAG 366 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ ++ +L V R+GG+EF S+ E+ +A RK++E Q +IS Sbjct: 367 DELLQHVAQRLEGCVRAADTVARMGGDEFTVILADISDNES--VARVARKVLEELQKSIS 424 Query: 212 -SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 G I + S GIA + + T+ AD A+Y AK+SGR FS+ N Sbjct: 425 IKGHDIFVGASIGIALYPDNGNDVETLTKNADMAMYRAKESGRGNYKFFSEEMN 478 >gi|332527195|ref|ZP_08403267.1| GGDEF domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332111619|gb|EGJ11600.1| GGDEF domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 390 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 9/195 (4%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128 +LV ++ ++LL G G +L + + +L+ D L+G LN A L + Sbjct: 187 TLVAVAAYVALL-GAGFGFVLACTERASRSLERLASHDHLTGALNRQAAEPLLAQALRRA 245 Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 ++ V D+D FKQ+ND GH GD+V+ + + + RLGGEEFA Sbjct: 246 RRGGGCVAFVLIDLDRFKQVNDRHGHVFGDEVLRRFAQTVRTRLRASDLLVRLGGEEFAL 305 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-AD 241 S A + LR ++ +G + ++ SAGIA +YR AD Sbjct: 306 VLPDSDAAGARRVLEQLRGDCREMGLHTEAGQACPVSFSAGIALSPQGRVDGEALYRAAD 365 Query: 242 QALYVAKKSGRNRVV 256 ALY AK+ GR+R V Sbjct: 366 GALYAAKRGGRDRAV 380 >gi|218709662|ref|YP_002417283.1| GGDEF family protein [Vibrio splendidus LGP32] gi|218322681|emb|CAV18857.1| GGDEF domain protein [Vibrio splendidus LGP32] Length = 652 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 ++ D+D FK++ND +GH +GD+V+ ++ ++ T + R GGEEF G+ + Sbjct: 522 TLAILDLDQFKRVNDTYGHDIGDQVLVEVAKRIERALSTNDVLARWGGEEFVLLLAGTQD 581 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-----ADQAL 244 + + +R+ I + I SGP + +T S G + +++ Y+ AD AL Sbjct: 582 PDEQL--EMIRQTIADQTIETYSGP-LALTTSIGATIHLTYQELNSSTYKQHLKSADDAL 638 Query: 245 YVAKKSGRNRVV 256 Y AK+SGRN+VV Sbjct: 639 YQAKQSGRNQVV 650 >gi|182419165|ref|ZP_02950419.1| signal transduction protein containing diguanilate cyclase/phosphodiesterase domain [Clostridium butyricum 5521] gi|237669193|ref|ZP_04529175.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377120|gb|EDT74690.1| signal transduction protein containing diguanilate cyclase/phosphodiesterase domain [Clostridium butyricum 5521] gi|237655080|gb|EEP52638.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 363 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 12/204 (5%) Query: 63 YILVENLSLVIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSAFI 119 YILVE+ ++ + + L I+ I ++ F+ Y ++ L++ D L G+ N F+ Sbjct: 152 YILVEHKMFNFMTTELKIFLKSIANQIAIIIENSFL-YRQLENLTQTDSLMGIYNRKYFL 210 Query: 120 SSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 L + N K ++V DID FK +ND +GH GD+V+ + L + R Sbjct: 211 DFLEKSIKENENRKFAVVMVDIDDFKNVNDTYGHQFGDEVLKNTAKILKKWTEENDLLAR 270 Query: 175 LGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSGPSIHITISAGIAERCHK-EP 232 GGEE + E+ + +RK +ENS++N G S +T S G+A + + Sbjct: 271 YGGEELIMYISDIKDAESVFNKIEIIRKELENSKVN-CYGLSDSVTASFGMAFYPEESKD 329 Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256 I +I AD LY +K+ G+N+V+ Sbjct: 330 IKQLIKVADDLLYESKRQGKNKVL 353 >gi|149911672|ref|ZP_01900281.1| hypothetical protein PE36_11472 [Moritella sp. PE36] gi|149805253|gb|EDM65269.1| hypothetical protein PE36_11472 [Moritella sp. PE36] Length = 597 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 7/153 (4%) Query: 107 DCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D ++ L+N + +GS + D+D FK IND +GH GD VI +D L Sbjct: 440 DSMTQLMNKAYLRQQMGSRIKCNAPDTYLGMIDLDDFKTINDTYGHLFGDHVIIKTADML 499 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 F R GGEEFA EQ+A ++ R IE + I S +T+S Sbjct: 500 KHYFNHKAVTSRYGGEEFAVLFNAVDEQQAFKKLDEFRCGIE-TMIVSSGDKKCQVTVSI 558 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G A+ + I IY AD+ALY+AK + +N+V Sbjct: 559 GFAKL--RTSIDMTIYDADKALYLAKNNSKNKV 589 >gi|146281532|ref|YP_001171685.1| hypothetical protein PST_1148 [Pseudomonas stutzeri A1501] gi|145569737|gb|ABP78843.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 376 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/250 (22%), Positives = 104/250 (41%), Gaps = 29/250 (11%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL----------G 83 F++F+ IFI L ++ L+Y L + +++ S+LL G Sbjct: 117 MFAVFLPPKIFIRYASLAFLSFVGLAALDYYLERPMDTTALALQASVLLVTLIWMCLFAG 176 Query: 84 YISGSILKELFISY-------------NRISQLSRIDCLSGLLNHSAFIS------SLGS 124 ++ + Y ++ L+ D L+GL N F+ S Sbjct: 177 HVHRLRQRMRQRRYALQAHQDTLRGMMRQLEDLASTDELTGLYNRQRFLRIAEGDLSRLR 236 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + + D+D+FK+IND GH GD+V+ + + R GGEEF Sbjct: 237 KGHQSGLALIDLDHFKRINDIHGHATGDRVLQTFAKVARSCLRDDDVLARYGGEEFVLLL 296 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + ++ LR+ +++ + + H+++S G+ + + + RAD+AL Sbjct: 297 PETDAEQFRACCERLREAFASAEPEDAEIAAGHLSLSIGLTLLNAGDELDAALQRADEAL 356 Query: 245 YVAKKSGRNR 254 Y AK++GRNR Sbjct: 357 YRAKRAGRNR 366 >gi|87199053|ref|YP_496310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Novosphingobium aromaticivorans DSM 12444] gi|87134734|gb|ABD25476.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Novosphingobium aromaticivorans DSM 12444] Length = 769 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 13/175 (7%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKL----SIVFFDIDYF 139 GS + E S +I+ L+R D L+GL N +LG Y+EK + + D+D F Sbjct: 322 GSDVTEQRESAEKIAYLARYDTLTGLPNRLMLTEALGDAMGYSEKWRSNCAFLMIDLDRF 381 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND 198 K +ND GH VGD+++A +SD++ + GRLGG+EFA ++ Q A LA+ Sbjct: 382 KAVNDTLGHLVGDQLLAMVSDRMTRIIKDGEVCGRLGGDEFAVVVRDVADSQRIAELADA 441 Query: 199 LRKIIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSG 251 + I SQ +++ S G I R + T++ AD ALY AK G Sbjct: 442 I--IATLSQPYEVDHHMLYVGASVGSAIGPR-DGATVETLLRNADLALYRAKDEG 493 >gi|326796526|ref|YP_004314346.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] gi|326547290|gb|ADZ92510.1| diguanylate cyclase [Marinomonas mediterranea MMB-1] Length = 386 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 8/155 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV--V 164 D L+GL + A + + +I D+D+FK+ ND +GH +GD+V+ ++ L Sbjct: 224 DELTGLASRRALNEDFMALPKHYAIAMVDVDHFKKFNDTYGHDMGDEVLRRVAKILAEGC 283 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SSGPSIHITIS 221 +G+ V R GGEEF+ G EA +R IE +I + S + +T S Sbjct: 284 YYGS---VYRYGGEEFSILYRGKKVAEAQDELESIRSWIEEEKIEVIHRDSKKYVSVTAS 340 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+A + + +AD++LY AK+ GRNR++ Sbjct: 341 FGLAVGSDQNEGFETLKKADESLYQAKRKGRNRLI 375 >gi|322835534|ref|YP_004215560.1| diguanylate cyclase [Rahnella sp. Y9602] gi|321170735|gb|ADW76433.1| diguanylate cyclase [Rahnella sp. Y9602] Length = 375 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 9/165 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPV 150 +++ L+ D L+G+ N + L + E+ S++ D+DYFK+ ND++GH Sbjct: 206 SKLDNLAHYDPLTGVANRRQLDNQLEQLIAQTERQGGTFSLIMIDVDYFKKYNDHYGHQA 265 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208 GD + +++ V P V R GGEEF ++ +A ++A +R+ + + I Sbjct: 266 GDTCLVGIAECFKQVVRQPADLVARYGGEEFVILLHSATANDAEVVAERIRQSVTQAAIP 325 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + S + +T+S GI + ++ RAD ALY AK +GRN Sbjct: 326 HALSQVADTVTVSQGIMQWSPGMTSLELLKRADGALYDAKHAGRN 370 >gi|258655404|ref|YP_003204560.1| diguanylate cyclase/phosphodiesterase [Nakamurella multipartita DSM 44233] gi|258558629|gb|ACV81571.1| diguanylate cyclase/phosphodiesterase [Nakamurella multipartita DSM 44233] Length = 814 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 N++ + + D L+GL N + F E+ LS++F D+D FK +ND GHPV Sbjct: 365 NQLHRQAFQDILTGLPNRALFTDRAAHALEQHRQSMRPLSLLFVDLDDFKAVNDTLGHPV 424 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI---LANDLRKIIENSQ 207 GD+++ ++++L V R GG+EFA A G + L LR + Sbjct: 425 GDELVIRVAERLRGAIRASDTVARFGGDEFAVLAEGEDADGVELGSRLVEALRPRFVLGE 484 Query: 208 INISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258 +S G SI GIAE + P T + RAD A+Y AK++G+ ++ + Sbjct: 485 HGLSIGASI------GIAEVPAEHPTPTLDDLFSRADIAMYAAKRAGKGQIALY 532 >gi|261404238|ref|YP_003240479.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Paenibacillus sp. Y412MC10] gi|261280701|gb|ACX62672.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Paenibacillus sp. Y412MC10] Length = 672 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 6/173 (3%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFIS--SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +F + + +L+ D ++GL N + + +K++I+F D+D FK IND GH V Sbjct: 233 MFFDRHVLEKLAYQDTITGLPNRNEMNRFFRTNAETDKITILFLDLDQFKAINDTLGHNV 292 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ + +L + V R+GG+EF S A LA+D+ + I+ ++ Sbjct: 293 GDLLVHEVGKRLRQFIRSGQQVFRIGGDEFLVILKQSDPNYAQRLADDILQQIK--KVYH 350 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 G +++T+S GI+ H +T++ AD A+Y AK G+N+ C D E Sbjct: 351 IDGNELYVTVSIGISIGSVHSSDRTTLLKNADTAMYKAKGLGKNQ-QCLYDEE 402 >gi|91224732|ref|ZP_01259992.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus 12G01] gi|91190278|gb|EAS76547.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus 12G01] Length = 786 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 30/256 (11%) Query: 29 IYFSIFFSIFIA---TVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLLL 82 ++ + FS +A T+ I + Y+ L P L+ L E N I + + + Sbjct: 257 VWLELAFSFGVAAFFTITLIILVLYRYV-LRPVSRLDKQLNELESNQRDNIEKLETNDEI 315 Query: 83 GYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKLSIVFFD 135 G +S + +EL + Y + +L+ D L+ L N F L S ++ L +V+ D Sbjct: 316 GRLSARFFDMYEELNVIYKKTKRLAETDHLTQLANRHRFHELATRELISPSQFLWVVYVD 375 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVV-------FGTPMFVGRLGGEEFAAAALGSS 188 +D FK +ND +GH +GD ++ S + + +P F RL G+EF A L SS Sbjct: 376 LDNFKYVNDKYGHELGDNLLKVFSSHIKNACQKFSHDYNSPCFAARLSGDEF--AILLSS 433 Query: 189 EQEAA----ILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243 QE +LA++L K I N + S+ S +T S GIA+ I+ ++ AD A Sbjct: 434 NQEVKRLPDLLASELLKPISNLSSSWSN--SFPVTASVGIAQYPQDGTDIAKLLSSADAA 491 Query: 244 LYVAKKSGRNRVVCFS 259 +Y AK++G+N+ +S Sbjct: 492 MYQAKRAGKNQYAYYS 507 >gi|54295494|ref|YP_127909.1| hypothetical protein lpl2581 [Legionella pneumophila str. Lens] gi|53755326|emb|CAH16822.1| hypothetical protein lpl2581 [Legionella pneumophila str. Lens] Length = 371 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 27/225 (12%) Query: 48 IFLFYIGLTPFYGL--EYIL-VENLS-LVIISITISLLLGYISGSILKELFISYN----- 98 +F FYI P Y + EY+ ++N + L I ++ ++L ++ ++ EL + Sbjct: 143 VFEFYI---PIYSISQEYVFFLDNTNHLFIFALIFTVLYHFLVQNLQYELLLKEQNYLLI 199 Query: 99 ----RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFG 147 + LS D L+ L N S F + L + E +++ F D+D FK IND +G Sbjct: 200 ADKEKFHYLSHHDSLTNLPNRSYFHAHLQTLLENTDTTKEAITLYFMDLDKFKPINDEYG 259 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+++ S +L F F+ RLGG+EF A + A A LR E Q Sbjct: 260 HEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPLDHIA-EALTLRIEQEFEQ 318 Query: 208 INISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKS 250 + +G +IH TIS GIA R K ++ AD+A+Y K+ Sbjct: 319 PFVINGQTIHCTISVGIANYPRNAKNA-EDLLKWADKAMYDNKRK 362 >gi|126175713|ref|YP_001051862.1| diguanylate cyclase [Shewanella baltica OS155] gi|125998918|gb|ABN62993.1| diguanylate cyclase [Shewanella baltica OS155] Length = 160 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 4/128 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 + +V DIDYFK IND GH VGD+++ +S L V R GGEEF SS Sbjct: 34 MCLVMIDIDYFKDINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSS 93 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 L + + I+ Q ++ +T S G+A+ EP+ RAD+ALY AK Sbjct: 94 LPLVESLCVRIAERIKRYQFT----DNVQLTCSFGVAKLADNEPMMLCFERADRALYRAK 149 Query: 249 KSGRNRVV 256 GRN++ Sbjct: 150 AQGRNQMC 157 >gi|302188295|ref|ZP_07264968.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 730 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 21/210 (10%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115 +G +L ++ + ++ T LL+ LK + +I L+ D L+GL N Sbjct: 245 HGAPLVLDISVEFITLNNTACLLMNARDIGALKN---AQAQIQHLAYHDPLTGLPNRALL 301 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L Sbjct: 302 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361 Query: 172 VGRLGGEEFAA---AALGSSEQ---EAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 V RLGG+EF GS +Q + LA++LR ++ ++ G + +T S G+ Sbjct: 362 VARLGGDEFVVLICGLEGSQDQVTRQVRELADNLRNLL--AEPMFLDGHRLQVTPSIGVV 419 Query: 226 --ERCHKEPISTIIYRADQALYVAKKSGRN 253 P + ++ RAD ALY AK GRN Sbjct: 420 LIPDDGLTP-ADLLKRADIALYRAKDCGRN 448 >gi|325680078|ref|ZP_08159645.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8] gi|324108241|gb|EGC02490.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8] Length = 364 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 28/186 (15%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVG 151 S ++ +++ +D L+GL N +S L EK I DID FK++ND +GH G Sbjct: 181 SEEKLERMAMVDNLTGLYNRHYLLSVLDRTEAVSPEKRWIALLDIDDFKKVNDTYGHNCG 240 Query: 152 DKV---IAFLSDQ-----LVVVFGTPMFV-------------GRLGGEEFAAAALGSSEQ 190 D + +A LS Q +V +G F+ R GGEEF ++ ++E Sbjct: 241 DYILHHVAELSQQVCNDCIVCRWGGEEFIILSTNFQKLSLSNRRWGGEEFIILSM-NTEH 299 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 IL LRK I + + G ++IT++ G+ + I +AD+ LY+ KK+ Sbjct: 300 STDILET-LRKRIADEKFRF-EGCELNITVTIGVCGYDKELTNDVWISKADEKLYIGKKN 357 Query: 251 GRNRVV 256 G+N+VV Sbjct: 358 GKNQVV 363 >gi|239636641|ref|ZP_04677643.1| ggdef domain protein [Staphylococcus warneri L37603] gi|239597996|gb|EEQ80491.1| ggdef domain protein [Staphylococcus warneri L37603] Length = 356 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 9/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 NR + D L+GL N F L +++E L ++ DID FK +ND + H Sbjct: 182 NRYENEDKYDYLTGLGNVKEFDRHLNQISKYTETHHESLGLLLIDIDGFKDVNDTYTHQA 241 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + R GGEEF+ + ++ LA ++R+ +E S ++ Sbjct: 242 GDAVLKQMSQLLKNYVPKQFLIFRNGGEEFSVVINDYTLDQSVKLAENIRQGVEKSSFHL 301 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 + I +++S G+ + S + AD ++VAK GRN+V+ Sbjct: 302 PNKEVIKLSVSIGVGYLTQNDRKSQRRVFKDADDMVHVAKSEGRNKVM 349 >gi|163804161|ref|ZP_02197927.1| putative regulatory components of sensory transduction system [Vibrio sp. AND4] gi|159172023|gb|EDP56999.1| putative regulatory components of sensory transduction system [Vibrio sp. AND4] Length = 232 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 11/175 (6%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ Q + D L+ L N ++ G + ++I+ D+D+FK NDN+GH G Sbjct: 55 RLQQQANEDGLTKLYNRRYIDQKLEGMVALHGRHRIPMAIILLDVDFFKLFNDNYGHTEG 114 Query: 152 DKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQIN 209 D+ + ++ QL + F + +VGR GGEEF + Q A A+ ++ +++ + Sbjct: 115 DRCLQAIASQLTMTFCRSGEYVGRYGGEEFIILLNNTDVQTAKKEADRIQVALDSLDYPH 174 Query: 210 ISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 S + +T+S G+ + KE I + D+ALY AK GRN +D+E Sbjct: 175 AYSSVASKVTVSQGVFTFQPTGKEKIEELYEMVDKALYSAKSRGRNTYTLINDVE 229 >gi|120599609|ref|YP_964183.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|146292394|ref|YP_001182818.1| diguanylate cyclase [Shewanella putrefaciens CN-32] gi|120559702|gb|ABM25629.1| diguanylate cyclase [Shewanella sp. W3-18-1] gi|145564084|gb|ABP75019.1| diguanylate cyclase [Shewanella putrefaciens CN-32] gi|319425694|gb|ADV53768.1| diguanylate cyclase [Shewanella putrefaciens 200] Length = 518 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + + L + DID+FK IND+FGH GDK Sbjct: 354 QKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWVAVADIDHFKTINDSFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF + L N +R+ ++N + Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLLPDVGNGDIVQLLNRVREKVKNIPFKFKN- 472 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A+ E I RAD ALY AK R+RVV Sbjct: 473 QRITVTVSIGAAQVMGNELIHETFERADAALYKAKHESRDRVV 515 >gi|307825254|ref|ZP_07655474.1| diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307733710|gb|EFO04567.1| diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 369 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 16/171 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I ++S ID L+G+ N +G E LS FFDID+FK +ND GH GD Sbjct: 188 IKRISYIDVLTGVNNRRFLEQRIGEELKRSQRNAEPLSCQFFDIDFFKPVNDKHGHQGGD 247 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V++ ++ + R GGEEF A + E +A A +RK I+ I ++ Sbjct: 248 LVLSLVAATIKHQLRDNDVFVRYGGEEFVALLSNTDEAKALETAERVRKAIQTLVIAVND 307 Query: 213 GPSIHITISAGIAE--------RCHKEPISTIIYRADQALYVAKKSGRNRV 255 S+ +T+S G++ E + ++ AD ALY AK +GRNRV Sbjct: 308 -ISVSVTVSIGVSTYVPDGTSISIDGEIATRLVKSADSALYRAKHNGRNRV 357 >gi|84623432|ref|YP_450804.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367372|dbj|BAE68530.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 569 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL LS++ D+D+FKQ ND+ GH GD ++A + Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L+ T R GGEEF + +EA +A +R I ++ + +T Sbjct: 462 ELLLTRLRTEDVACRYGGEEFTVLLPEADGEEALRVAEQIRGYIAALAVSDEARALPKVT 521 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E +++I +AD ALY AK GRNRV Sbjct: 522 ASIGVASFPADGEQGASLIQKADAALYRAKHRGRNRV 558 >gi|78048604|ref|YP_364779.1| putative signal transduction protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037034|emb|CAJ24765.1| putative signal transduction protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 494 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 16/200 (8%) Query: 71 LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125 +V+ ++ +LLLG ++ L+ + + ++S + +D L+G+ N AF L Sbjct: 294 IVVAALGCTLLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQ 352 Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179 LS++ D+D+FK ND +GH GD + ++ + + R GGEE Sbjct: 353 DAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEE 412 Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235 F + A LA+ +R + E +++SS S H+T+S G A + P+S Sbjct: 413 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNA 472 Query: 236 IIYRADQALYVAKKSGRNRV 255 I++ AD ALY AK+ GRNR Sbjct: 473 IVHDADSALYRAKQKGRNRT 492 >gi|327479480|gb|AEA82790.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 261 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 8/162 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 + + S +D L+G+ N L +E+ L++V DID FK IND++GH VGD Sbjct: 96 LREASMLDSLTGIANRRLLTERLREESERAKRYGRPLALVMLDIDRFKIINDDYGHDVGD 155 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + + GR GGEEF + Q A + L I + ++ Sbjct: 156 RVLIEVVRVMESEIREHDLCGRWGGEEFLILMPECTAQMAQTVLGRLGASIAALGVRVNE 215 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +T S GIAE +E S I RAD AL AK+SGRNR Sbjct: 216 D-LLGVTASMGIAELRPEETYSNTINRADLALLRAKRSGRNR 256 >gi|262274875|ref|ZP_06052686.1| putative c-di-GMP phosphodiesterase A-related protein [Grimontia hollisae CIP 101886] gi|262221438|gb|EEY72752.1| putative c-di-GMP phosphodiesterase A-related protein [Grimontia hollisae CIP 101886] Length = 633 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%) Query: 101 SQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 +L++ D L+GL N F + L + N L + + DID FK IND+ GH +GD+V+ Sbjct: 202 EKLAQFDALTGLYNRHGFSRRLVQLINSNTPLLMFYLDIDNFKNINDSLGHHIGDRVLQD 261 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP--- 214 ++ +L +G LGG+EFA S E +AN+L + + ++I S P Sbjct: 262 IAQRLRKRLPPDTILGHLGGDEFAILLPEHSSDE---VANELSRRV----VDIISQPFDL 314 Query: 215 ---SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 S ++ S G+ + +++ AD A+Y AK+ GRNR+V ++ N Sbjct: 315 YHFSKYLACSIGMVRYPDDGKDARSLLQNADTAMYEAKERGRNRLVTYNQHMNKEA 370 >gi|257482072|ref|ZP_05636113.1| GGDEF [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987479|gb|EGH85582.1| hypothetical protein PLA107_20818 [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011458|gb|EGH91514.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 355 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 11/171 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFKQI 142 S++ + + +R +LS D L+ N A ++SL + ++K S+ F D+D FK I Sbjct: 165 SLVMQTMAASDRYRKLSETDTLTNAPNRRALVASLDNALRSDDKSSLWFAMLDLDNFKSI 224 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 NDN GH VGD V+ + + G F GRLGGEEF S AA + + Sbjct: 225 NDNHGHDVGDNVLICFATLIKNTTGLVSF-GRLGGEEFGVML---SAANAADAIAAMDHL 280 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + ++Q + ++ + + SAGIA + ++ ++ AD+ LY+AK+SGR Sbjct: 281 LMHAQKDQTA--KMPYSFSAGIASLARAKNVNDLLKEADENLYLAKRSGRQ 329 >gi|70729416|ref|YP_259154.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68343715|gb|AAY91321.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5] Length = 523 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 76/167 (45%), Gaps = 18/167 (10%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F +L LS+V DIDYFK+ ND +GH GD + ++ Sbjct: 348 DSLTGLANRRLFERALTVEFGRGARQRSPLSLVMVDIDYFKRYNDTYGHVAGDHCLTEVA 407 Query: 160 DQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 L + R GGEEFA + A +A +R+ + I S P + Sbjct: 408 QALKGCCQRKADLAVRYGGEEFAVLLPDTDIHGALAMAEQIRRSVMQRNIAHSGSPVGCV 467 Query: 219 TISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 T+S G C+ ++ I I RAD ALY AK +GRNR + + Sbjct: 468 TVSLG----CYAFVPTGRDSIEMFIERADAALYQAKATGRNRAMALA 510 >gi|27365079|ref|NP_760607.1| C-di-GMP phosphodiesterase A-like protein [Vibrio vulnificus CMCP6] gi|37680869|ref|NP_935478.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus YJ016] gi|27361225|gb|AAO10134.1| C-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus CMCP6] gi|37199618|dbj|BAC95449.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus YJ016] Length = 687 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 12/171 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFF--DIDYFKQINDNFGHPV 150 ++++QL+ D L+GL N S + SL S +E+ V F D+D FK IND+ GH + Sbjct: 236 SQLNQLAYFDTLTGLANRSLLLKSLNETLKESQSEQYPGVLFYLDLDRFKTINDSLGHTI 295 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ ++ +L R+GG+EFA ++++AA A L +I N +I Sbjct: 296 GDNLMRTIAKRLEAWLQPGEIAARIGGDEFAILIPKLNKEDAANKAKQLLTLISNP-YSI 354 Query: 211 SSGPSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVVCFS 259 ++ T+S GI+ K IS+I + +AD ALY AK +GRN+ + + Sbjct: 355 DDH-QLYCTVSIGISTFADK-GISSIDVLRQADTALYRAKVAGRNKYMFYE 403 >gi|15595487|ref|NP_248981.1| hypothetical protein PA0290 [Pseudomonas aeruginosa PAO1] gi|218889030|ref|YP_002437894.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa LESB58] gi|254237477|ref|ZP_04930800.1| hypothetical protein PACG_03552 [Pseudomonas aeruginosa C3719] gi|254243387|ref|ZP_04936709.1| hypothetical protein PA2G_04201 [Pseudomonas aeruginosa 2192] gi|9946134|gb|AAG03679.1|AE004467_1 hypothetical protein PA0290 [Pseudomonas aeruginosa PAO1] gi|126169408|gb|EAZ54919.1| hypothetical protein PACG_03552 [Pseudomonas aeruginosa C3719] gi|126196765|gb|EAZ60828.1| hypothetical protein PA2G_04201 [Pseudomonas aeruginosa 2192] gi|218769253|emb|CAW25013.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa LESB58] Length = 323 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ N F S ++ E L+ + D+D FK+IND FGH VGD Sbjct: 158 LQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDFKKINDRFGHQVGD 217 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ GR+GGEEFA G EQ A + L++ ++ ++ Sbjct: 218 QVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERLQREVQ--RLRFQE 275 Query: 213 GP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G S IT+S G+ + E + + RAD A+Y AK+ G++ +V Sbjct: 276 GEHSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIV 321 >gi|328543003|ref|YP_004303112.1| diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with PAS sensor, signal transduction histidine kinase and methyl-accepting chemotaxis domains; membrane-associated protein [polymorphum gilvum SL003B-26A1] gi|326412749|gb|ADZ69812.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with PAS sensor, signal transduction histidine kinase and methyl-accepting chemotaxis domains; putative membrane-associated protein [Polymorphum gilvum SL003B-26A1] Length = 980 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 13/174 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 RI+ L+ D L+GL N F +L++++ D+D FK +ND GHP GD Sbjct: 545 RIAHLAHHDALTGLANRVLFREEACEALLRRRKARRLALLYIDLDQFKAVNDTLGHPTGD 604 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 +++ ++ +L G V RLGG+EFA G+ E A A D ++IE +I Sbjct: 605 RLLVEVAKRLRAAVGRHDHVARLGGDEFAIMLAGNPRAEDASAAAD--RLIETIRIPYEV 662 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF--SDIE 262 G I + S GIA + ++ + AD ALY AK+ GRN CF SD++ Sbjct: 663 DGNFIVVGASVGIAMAPDDGTDADVLMKHADMALYRAKQDGRN-TYCFFESDMD 715 >gi|188579454|ref|YP_001922899.1| diguanylate cyclase [Methylobacterium populi BJ001] gi|179342952|gb|ACB78364.1| diguanylate cyclase [Methylobacterium populi BJ001] Length = 516 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 24/212 (11%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128 ++V++ ++++L + G L+ +++LS D L+GL N F + + ++ Sbjct: 295 TVVLLLCGLTVVLSLLFGRELRHRAAMQAELARLSLTDALTGLPNRRRFEEAFEAAWDRA 354 Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFA 181 LS++ D D+FK+ ND +GH VGD+V+ L+ L P V R+GGEEF Sbjct: 355 RRTGKPLSLLVVDADHFKRYNDRYGHAVGDEVLKGLAQCLSAGVHRPDDLVARVGGEEF- 413 Query: 182 AAALGSSEQEAAI-LANDLRKIIENSQI---NISSGP---SIHITISAGIA-ERCHKEPI 233 A L ++Q+ A+ +A+ + + + + I++G SI +T G A ER Sbjct: 414 AILLPDTDQDGAMRIASKVHEAVATVSVPSAGIAAGAVTVSIGLTTGHGSASERAE---- 469 Query: 234 STIIYR-ADQALYVAKKSGRNRVVCFSDIENN 264 +YR AD ALY AK +GRN+ C E Sbjct: 470 --ALYRAADAALYEAKAAGRNQTRCAPGSEKG 499 >gi|149194996|ref|ZP_01872089.1| signaling repeat/GGDEF domain/EAL domain protein [Caminibacter mediatlanticus TB-2] gi|149134917|gb|EDM23400.1| signaling repeat/GGDEF domain/EAL domain protein [Caminibacter mediatlanticus TB-2] Length = 444 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 99/203 (48%), Gaps = 4/203 (1%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 G+ Y +E L+ I +++ I S LK L + + + + D L+ LLN F Sbjct: 236 GINYSELEKLNRKINIEINNIIYKTILKSKLKILDKNLQNLKEKTVYDKLTSLLNREGFE 295 Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 N K + D+D FK IND FGH +GD+V+ + QL F + +GR GG+E Sbjct: 296 ELFKEKNYKY-FMLIDLDNFKYINDTFGHDIGDEVLKEFAWQLKKHFKEDL-IGRWGGDE 353 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F A ++E D+ K ++ Q+N P ++ S G+A + P+ + Sbjct: 354 FIIAT-NKQKKEITQHFKDINKKLKEIQLNFDKNPQKILSTSVGVATNNN-FPLEELFKN 411 Query: 240 ADQALYVAKKSGRNRVVCFSDIE 262 AD ALY KK+ + +V+ F DI+ Sbjct: 412 ADLALYKVKKTKKGKVLFFEDID 434 >gi|91792128|ref|YP_561779.1| ammonium transporter [Shewanella denitrificans OS217] gi|91714130|gb|ABE54056.1| ammonium transporter [Shewanella denitrificans OS217] Length = 644 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 13/178 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 ++ I+ +R+S+L++ D L+ L N F S + S++ DID+FK N Sbjct: 453 RQADINSHRLSRLAKTDHLTRLNNRLGFDECYDSEWLRMRREKKPFSLLLIDIDHFKLYN 512 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D++GHP GD+ + ++ L P R+GGEEFA + + +AND+ Sbjct: 513 DHYGHPRGDQCLQQVALVLASTAKRPADCCARVGGEEFAILLPDTDSEAGEKIANDINIR 572 Query: 203 IENSQINISSGPSI-HITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ +I S P + ++T+S GIA ER + + AD ALY AK++GRN V Sbjct: 573 LKALEIPHLSSPIMPYVTVSIGIATLTPERYDSLDQAYLYQCADDALYSAKQAGRNGV 630 >gi|58581502|ref|YP_200518.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426096|gb|AAW75133.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 569 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL LS++ D+D+FKQ ND+ GH GD ++A + Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L+ T R GGEEF + +EA +A +R I ++ + +T Sbjct: 462 ELLLTRLRTEDVACRYGGEEFTVLLPEADGEEALRVAEQIRGYIAALAVSDEARALPKVT 521 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E +++I +AD ALY AK GRNRV Sbjct: 522 ASIGVASFPADGEQGASLIQKADAALYRAKHRGRNRV 558 >gi|78047541|ref|YP_363716.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035971|emb|CAJ23662.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 983 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN + +++L L++V D+D+FK +ND GH GD V+A + Sbjct: 818 DELTGLLNRAGILAALREMLLHAEHTGRPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 877 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ + +GR GGEE A G + L I + I+ G +H+T Sbjct: 878 RRMDTLMRGDDRIGRYGGEELLALLPGLNLDATHRLDALHHGICGDYPID---GGWLHVT 934 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E + ++ RAD ALY AK+SGRNR+ Sbjct: 935 CSVGVAWFQRGETLEQLLARADAALYRAKRSGRNRI 970 >gi|308051420|ref|YP_003914986.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] gi|307633610|gb|ADN77912.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] Length = 352 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 9/162 (5%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GL N F +S LS++ D+DYFK+ ND+FGH GD+ + Sbjct: 188 LSNQDPLTGLGNRRCFEQRLAQSVSEAKRSKNALSLILLDVDYFKRYNDHFGHQAGDECL 247 Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSG 213 ++ L + + R+GGEEF + ++ A LA +++ ++++ + SG Sbjct: 248 RTVAQILRLSSRRQSDTLARIGGEEFVLLLPNTDKRGAQRLAEEIQSRLLQADLDHPQSG 307 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S +T+S GIA+ ++++AD+A+Y +K +GRN + Sbjct: 308 ISKRVTLSQGIAQWHPGLSGDALMHQADKAMYESKLAGRNTI 349 >gi|237731361|ref|ZP_04561842.1| diguanylate cyclase [Citrobacter sp. 30_2] gi|226906900|gb|EEH92818.1| diguanylate cyclase [Citrobacter sp. 30_2] Length = 594 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 7/163 (4%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +L + E +S + DID+FK IND FGH GD VI ++ Sbjct: 430 DPLTGLRNRHHLEDTLRTQMSQAVRNKEPISCLMIDIDHFKSINDRFGHEAGDSVIKSIA 489 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + V R GGEEF + EQ A A ++ + + H+ Sbjct: 490 ATIQRVVHDSGMAFRYGGEEFLVLLANTDEQAANRFATEIYNGVRELSLRFGVSDIGHVD 549 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +S G+A ++ AD ALY AK+ GR+R+V F +E Sbjct: 550 VSIGVASYPQHAQSDNLLRAADVALYRAKELGRSRIVSFGMLE 592 >gi|163748644|ref|ZP_02155897.1| sensory box protein [Shewanella benthica KT99] gi|161331754|gb|EDQ02558.1| sensory box protein [Shewanella benthica KT99] Length = 859 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 22/223 (9%) Query: 61 LEYILVENLSLVIISITISLLLGY---ISGSIL-------KELFISYNRISQLSRIDCLS 110 L + ++ S I+ +IS LL + ++G+++ +EL ++ Q + D ++ Sbjct: 380 LSKLTLQGESTRIMERSISNLLNHKQRVTGTVILLRDITQEELL--KRKLHQRANFDPIT 437 Query: 111 GLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 LLN AF L +++ + ++I +FD++ FK IND+ GH GD+++A ++ + Sbjct: 438 SLLNRRAFEERLAAFSLGAQSVAICYFDLEQFKLINDSCGHSAGDRMLAIVARAMQSCLT 497 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIA 225 + RLGG+EF A S E A LA ++++ + + + + H + +SAGIA Sbjct: 498 QDEMLARLGGDEFGLAIRDHSALEVAQLA---KRMVASVSMQVLRDNACHCKVGVSAGIA 554 Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN-TC 266 R ++ AD A AK G N+V + D + + TC Sbjct: 555 IARAPYISAKELLKDADIACLAAKSKGSNQVHFYDDKDKDLTC 597 >gi|54292994|ref|YP_125409.1| hypothetical protein lpl0030 [Legionella pneumophila str. Lens] gi|53752826|emb|CAH14260.1| hypothetical protein lpl0030 [Legionella pneumophila str. Lens] Length = 976 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N+KL+++F D+D FKQIND+ GH +GD ++ LS++ + + + RLGG+EF Sbjct: 580 NQKLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILE 639 Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243 +++A I+A R+I SQ + + ++ S GIA H + T++ AD A Sbjct: 640 NIMQDKDAEIIAKKCREIC--SQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTA 697 Query: 244 LYVAKKSGRNRVVCFSD 260 +Y +K G+N F + Sbjct: 698 MYQSKIRGKNNWTVFQN 714 >gi|86146774|ref|ZP_01065094.1| hypothetical protein MED222_15549 [Vibrio sp. MED222] gi|85835424|gb|EAQ53562.1| hypothetical protein MED222_15549 [Vibrio sp. MED222] Length = 652 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 ++ D+D FK++ND +GH +GD+V+ ++ ++ T + R GGEEF G+ + Sbjct: 522 TLAILDLDQFKRVNDTYGHDIGDQVLVEVAKRIERALSTNDVLARWGGEEFVLLLAGTQD 581 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-----ADQAL 244 + + +R+ I + I SGP + +T S G + +++ Y+ AD AL Sbjct: 582 PDEQL--EMIRQTIADQTIETYSGP-LALTTSIGATIHLTYQELNSSTYKQHLKSADDAL 638 Query: 245 YVAKKSGRNRVV 256 Y AK+SGRN+VV Sbjct: 639 YQAKQSGRNQVV 650 >gi|254705887|ref|ZP_05167715.1| GGDEF domain-containing protein [Brucella pinnipedialis M163/99/10] gi|254711115|ref|ZP_05172926.1| GGDEF domain-containing protein [Brucella pinnipedialis B2/94] gi|254712426|ref|ZP_05174237.1| GGDEF domain-containing protein [Brucella ceti M644/93/1] gi|254715498|ref|ZP_05177309.1| GGDEF domain-containing protein [Brucella ceti M13/05/1] gi|256029496|ref|ZP_05443110.1| GGDEF domain-containing protein [Brucella pinnipedialis M292/94/1] gi|256059190|ref|ZP_05449396.1| GGDEF domain-containing protein [Brucella neotomae 5K33] gi|260167413|ref|ZP_05754224.1| GGDEF domain protein [Brucella sp. F5/99] Length = 221 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 23/230 (10%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97 IAT+I I+ G+ G++ V L +++ I++ LG S L+EL SY Sbjct: 1 MIATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSY 56 Query: 98 -------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFG 147 N +++++ +D L+GLLN +FI + N+ +F D+DY KQIND +G Sbjct: 57 RTAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYG 116 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--II 203 HP GD I ++ L + + R+GG+EF A G+ ++L++ LR ++ Sbjct: 117 HPAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLL 176 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + N+ S +T+S G + ++ AD+ LY KKS R Sbjct: 177 REKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 221 >gi|242242116|ref|ZP_04796561.1| ABC superfamily ATP binding cassette transporter, binding protein [Staphylococcus epidermidis W23144] gi|242234429|gb|EES36741.1| ABC superfamily ATP binding cassette transporter, binding protein [Staphylococcus epidermidis W23144] Length = 365 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 18/213 (8%) Query: 55 LTPFYGLEYILVENLSLVIIS--ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112 L+P Y L VE L L+ IS ITI+ + ++ + F NR + D L+GL Sbjct: 153 LSPIYEL----VEILVLIPISFIITIASAITFVD---IWHFFSLVNRYENEDKYDYLTGL 205 Query: 113 LNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 N F L + K L+++ DID FK +ND++ H GD V+ +S L Sbjct: 206 GNVKEFDRHLNEVSSKAEEKKQSLALLLIDIDGFKDVNDHYSHQSGDAVLKQMSQLLKNY 265 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 + R GGEEF+ + ++ LA ++R +E S ++ + I +++S G+ Sbjct: 266 VPNQFKIFRNGGEEFSVVIRDYTLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVG 325 Query: 226 ERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 + S + AD ++VAK GRN+V+ Sbjct: 326 YLTQDDRKSQRKVFKDADDMVHVAKSEGRNKVM 358 >gi|192292005|ref|YP_001992610.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris TIE-1] gi|192285754|gb|ACF02135.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris TIE-1] Length = 656 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 81/174 (46%), Gaps = 23/174 (13%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148 E+ S + Q++R D L+GL N S F + + ++ V FD+D FK +ND GH Sbjct: 213 EVLNSNRALEQIARADPLTGLANRSHFRDAAADACRSGQGVAFVLFDVDNFKIVNDTRGH 272 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---------AAAALGSSEQEAAILANDL 199 GD+VIA ++D L G RLGG+EF AA AL + + + L L Sbjct: 273 DAGDRVIAAVADLLRSSCGPHDLPVRLGGDEFIVVLKGDDVAARALSLARRLSGALTRPL 332 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252 + + G + IT S GIA + + RAD ALY AK GR Sbjct: 333 QVL----------GQPLAITCSIGIAAHPGGPIDVEDVFSRADAALYRAKDDGR 376 >gi|153215165|ref|ZP_01949863.1| GGDEF family protein [Vibrio cholerae 1587] gi|124114889|gb|EAY33709.1| GGDEF family protein [Vibrio cholerae 1587] Length = 359 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 19/164 (11%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G LN L NE I DID+FK +ND +GH GDKVI Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237 Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 Q+V + T + RLGG+EF +S +A ++ + + I+ + Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+AE + RADQALY +KK G+NRV Sbjct: 294 AK----VTVSVGLAEALRTDDPEHWFKRADQALYHSKKMGKNRV 333 >gi|307316675|ref|ZP_07596118.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83] gi|306897873|gb|EFN28616.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83] Length = 564 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 15/163 (9%) Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL N F L +L+++ D+D FK IND GH GD V+ +D+ Sbjct: 138 DVLTGLPNRRQFSDQLRGALPVPNGARLALMQIDLDDFKPINDTLGHGAGDAVLKMAADR 197 Query: 162 LVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + V F RL G+EFA A +E+ A L N ++ IN+ G S+ Sbjct: 198 IRSVLRDREFAYRLAGDEFAVIQWRADQPSEAERLADALINAFKEPFTVEGINVFVGASV 257 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I ++ G + ++ AD ALY AKK GR R F+ Sbjct: 258 GIAVAPGDGNE-----VEQLMKAADIALYAAKKDGRGRSSTFT 295 >gi|293374569|ref|ZP_06620887.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis PC909] gi|292646802|gb|EFF64794.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sanguinis PC909] Length = 685 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 9/176 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIN 143 G + ++ ++ + L D +GLLN + + + + + + FDIDYFK IN Sbjct: 515 GVLYRQRYMD-KKTEYLKYTDYATGLLNRVGYENEMNKVLKRRQHFAFIIFDIDYFKSIN 573 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GDKVI ++ + + RLGG+EF + + + +++ + Sbjct: 574 DTYGHLIGDKVIEHVAYTIKSCTRKGDIICRLGGDEFVLCLMMDDIAKVCTVLEAIQEEM 633 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + ++ SI +TI G + C E + + ADQALY +KK+GRN+ FS Sbjct: 634 FDYSEDLKVTASIGVTIYEG--QDCGME---MLYHEADQALYKSKKNGRNQFNIFS 684 >gi|262375814|ref|ZP_06069046.1| predicted protein [Acinetobacter lwoffii SH145] gi|262309417|gb|EEY90548.1| predicted protein [Acinetobacter lwoffii SH145] Length = 384 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 5/153 (3%) Query: 107 DCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GLLN F + + + + +++ D+D+FK +ND +GH VGD V+ +S Sbjct: 225 DPLTGLLNRRGFEAYIQKIDPNPALQHAVLMADLDHFKAVNDRYGHQVGDLVLQHISQIF 284 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + V R+GGEEF + A +A +R +E + ++ I++TIS Sbjct: 285 KANIRSKDQVSRIGGEEFLLVLHDIQKDAAFKIAERIRLQLEETPLH-HEQQLIYLTISI 343 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G++ H I AD A+Y AK+ GRN+V Sbjct: 344 GVSFFNHPNQIKEATLAADHAMYQAKQMGRNQV 376 >gi|298530455|ref|ZP_07017857.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] gi|298509829|gb|EFI33733.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] Length = 425 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 95/184 (51%), Gaps = 19/184 (10%) Query: 83 GYISGSILKELFISYNRISQ-----LSRIDCLSGLLNHSAFISSLG-------SYNEKLS 130 G +G +L L I+ S+ ++ D L+GL N + F+ L Y + Sbjct: 233 GGHAGVVLMSLDITQQEKSRQKCEYMAMYDSLTGLGNRNLFMDRLEHVLSQARRYGNFVG 292 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSE 189 +++ D+D FK+IND GH GD+V+ + ++ RLGG+EFA + Sbjct: 293 MLYLDLDGFKEINDRLGHAAGDEVLVETARRIKSCLRESDIPARLGGDEFAVILPQMKNP 352 Query: 190 QEAAILANDLRKIIE--NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYV 246 +EA +A KI+E N Q + S+G ++++ ISAG+A H + + ++ AD+A+Y Sbjct: 353 REAEEVAG---KILEKWNPQFDTSAGKAVNMNISAGLAAFPEHGDTLDRLVNTADKAMYQ 409 Query: 247 AKKS 250 AKK+ Sbjct: 410 AKKT 413 >gi|213969082|ref|ZP_03397221.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv. tomato T1] gi|301384024|ref|ZP_07232442.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv. tomato Max13] gi|302058730|ref|ZP_07250271.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv. tomato K40] gi|302131692|ref|ZP_07257682.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926080|gb|EEB59636.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv. tomato T1] Length = 334 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + I +I Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHI 284 Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 + P +T+S G+A + + +I AD+ LY+AK +GRN+V Sbjct: 285 APVPGSSLTVSIGVATVTPQVGQHSRQLILDADKGLYLAKNNGRNQVAA 333 >gi|167576691|ref|ZP_02369565.1| GGDEF domain protein [Burkholderia thailandensis TXDOH] Length = 462 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 + L+ ++ + + + D L+ + N S F + +N +++V D+D+FKQ N Sbjct: 275 RRLYDAHASLMRTASHDALTMVYNRSYFNEQFERAFDYVRRHNLPIALVMVDVDHFKQYN 334 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V FV R GGEEFA G+ E+ AA +A R+ Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVASRAADFVARYGGEEFAVVLPGTDERGAAAIAEQARQS 394 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E ++ AD ALY AK GRN Sbjct: 395 VERLRIAADTSPG-YVTVSAGYAATSGNPFETPGALVAAADAALYRAKMLGRN 446 >gi|28868706|ref|NP_791325.1| response regulator/GGDEF domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|256032859|pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas Syringae gi|28851945|gb|AAO55020.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331016327|gb|EGH96383.1| response regulator/GGDEF domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 334 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + I +I Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHI 284 Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 + P +T+S G+A + + +I AD+ LY+AK +GRN+V Sbjct: 285 APVPGSSLTVSIGVATVTPQVGQHSRQLILDADKGLYLAKNNGRNQVAA 333 >gi|39936085|ref|NP_948361.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009] gi|39649939|emb|CAE28463.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris CGA009] Length = 388 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 10/203 (4%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS 130 LV+ +T+ ++S + + L + R+++ + D L+ L N + F+ +L + Sbjct: 176 LVLFWLTLREASKHLSAAFTERLEAKH-RLARQATHDFLTDLPNRAGFLQALSDMAGNFT 234 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSE 189 +V D+D FK IND GH GD ++ ++++L G R GG+EF + S+E Sbjct: 235 VVAIDLDGFKPINDRHGHHTGDDLLRQVAERLTTCVGADGVAARFGGDEFMLLKPVTSAE 294 Query: 190 Q---EAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQA 243 Q EA LA + + + S + + + I SAGIA + ++ R D+A Sbjct: 295 QGRDEALALAR--KAVFDLSMPYLLADLPVCIGASAGIAISHAALAGGNTAQLLERVDRA 352 Query: 244 LYVAKKSGRNRVVCFSDIENNTC 266 LYVAK++G DIE + C Sbjct: 353 LYVAKRAGGGCAWADGDIEPSCC 375 >gi|294339848|emb|CAZ88211.1| hypothetical protein; putative Diguanylate kinase with GGDEF domain [Thiomonas sp. 3As] Length = 325 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 89/196 (45%), Gaps = 16/196 (8%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLS 130 I L L + G E+ + R +Q D L+GL +A L S Sbjct: 138 IELGLDTLQGFADLEVVFAAQRAAQ----DPLTGLPGRAALQQRLQGEQSLVLRQGRMCS 193 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 +V DID+FK +ND GH GD+V+A + L V R GGEEF G++ Sbjct: 194 VVMLDIDHFKSVNDQHGHQAGDRVLAAFARLLRGALRPYDGVYRYGGEEFVLVLPGATAA 253 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +A + + +R+ I + + +HI SAG+A ++ I+ + AD ALY AK Sbjct: 254 QAVQIIDRMRQTIAQRPLVQTQTGGLHIRFSAGVAA-LNERAIAQTLRCADAALYHAKAE 312 Query: 251 GRNRVVCFSDIENNTC 266 GR++V +E C Sbjct: 313 GRDQV----RLERGHC 324 >gi|295690169|ref|YP_003593862.1| response regulator receiver modulated diguanylate cyclase [Caulobacter segnis ATCC 21756] gi|295432072|gb|ADG11244.1| response regulator receiver modulated diguanylate cyclase [Caulobacter segnis ATCC 21756] Length = 454 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 9/164 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N + L + +++S + DID+FK+IND FGH +GD+V Sbjct: 287 ELAVTDQLTGLHNRRYMVGQLETLVRRAAMGGDEVSALLIDIDHFKKINDTFGHDIGDEV 346 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + +L R GGEEF + +A +A +RK + S +++G Sbjct: 347 LREFALRLASNVRAIDLPCRYGGEEFTVIMPETRMADALRIAERIRKHVSASPFKVANGD 406 Query: 215 S-IHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVV 256 + +T+S G++ E ++ RAD+ +Y AK SGRN VV Sbjct: 407 EMLTVTVSVGVSATGGPEDTPEALLKRADEGVYEAKASGRNTVV 450 >gi|213621209|ref|ZP_03373992.1| hypothetical protein SentesTyp_28347 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 205 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 7/177 (3%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFG 147 +L ++ LS +D L+GL N + L + S ++ DID+FK ND++G Sbjct: 28 KLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYG 87 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD+ + +S + + V R GGEEF + Q+A A +R+ + + + Sbjct: 88 HMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLK 147 Query: 208 IN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 I + + ++T+S GIA + I I +AD+ALY AK GRN ++ D+ Sbjct: 148 IPHMFNESVATNVTVSIGIAPLTDRN-IGDAIEKADKALYEAKHLGRNHILVSDDMR 203 >gi|167640924|ref|ZP_02399182.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|177652778|ref|ZP_02935151.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|254738759|ref|ZP_05196462.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western North America USA6153] gi|167511144|gb|EDR86532.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|172081812|gb|EDT66881.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] Length = 567 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ + +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF + E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|71734247|ref|YP_275408.1| GGDEF domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554800|gb|AAZ34011.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 523 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 18/178 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQIND 144 EL I+ N + ++ D L+ L N F ++L S N ++I+ DID+FKQ ND Sbjct: 328 ELNIARNELEIIAHTDSLTHLANRRCFDAALQQEWGRASRNTATIAIILLDIDWFKQYND 387 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199 +GH GD + Q+ + G + R GGEEF + A +A + Sbjct: 388 TYGHLQGDDCL----KQVAGLIGNSLDRAGDIAARYGGEEFVILLPETDLAGALKIAEKI 443 Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R +E ++I S+ P +TIS+G+ K+ + + D+ LY+AK GRNRV Sbjct: 444 RSSVETNRIEHSASPLGKLTISSGVVSINAAEKDGHTAALAEGDRLLYLAKTRGRNRV 501 >gi|332533402|ref|ZP_08409267.1| response regulator containing a CheY-like receiver domain and a GGDEF domain [Pseudoalteromonas haloplanktis ANT/505] gi|332037111|gb|EGI73568.1| response regulator containing a CheY-like receiver domain and a GGDEF domain [Pseudoalteromonas haloplanktis ANT/505] Length = 266 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 75/163 (46%), Gaps = 7/163 (4%) Query: 101 SQLSRIDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDK 153 Q + D L+G+ N S F+ + E+ SI+ D+D FK +ND GH GD Sbjct: 102 KQDAYTDPLTGIANRRFITSHFLKLAQTRPEQYLPFSILLIDLDNFKSLNDTHGHDFGDT 161 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + L F R GGEEF + A ++AN R+ + I Sbjct: 162 VLIEFTKLLESQFLATALKARYGGEEFVVILPQLTASTATVIANKFREAVAGHVIFTDDK 221 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I IT S GI++ + +AD+ALY AK +GRNRVV Sbjct: 222 QRISITCSIGISQVNKVTDYDDSLKQADEALYSAKAAGRNRVV 264 >gi|330821023|ref|YP_004349885.1| Diguanylate cyclase with PAS/PAC sensor [Burkholderia gladioli BSR3] gi|327373018|gb|AEA64373.1| Diguanylate cyclase with PAS/PAC sensor [Burkholderia gladioli BSR3] Length = 600 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 12/191 (6%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS--------LGSYNEKLS 130 +L G+I+ + ++ + + +L+ ID L+ L N F++ + + + + Sbjct: 413 TLWHGFITDTTERKRIEA--ELHELATIDHLTELANRRDFLAQSEAVFMRLRHTGHGEAA 470 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D+FK +ND +GH +GD+ + + L + VGR+GGEEFAA G S Sbjct: 471 VLMLDLDHFKSLNDRWGHALGDRALRHFAQLLRQEARSTDIVGRIGGEEFAAVLPGLSID 530 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKK 249 A L++ + + + + + +T+S GI + + ++ R D+ALYVAK Sbjct: 531 AAIDFGLRLQQRMTEAPLAVGER-LVALTVSIGIDRMSAADLGVDQVLTRCDKALYVAKA 589 Query: 250 SGRNRVVCFSD 260 GRNR+ ++D Sbjct: 590 RGRNRIELYTD 600 >gi|332716500|ref|YP_004443966.1| diguanylate cyclase [Agrobacterium sp. H13-3] gi|325063185|gb|ADY66875.1| diguanylate cyclase [Agrobacterium sp. H13-3] Length = 302 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 17/211 (8%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ E + + L + S L GY + ++L + + S+ D L+G N Sbjct: 99 FWMTETVQQDGWMLCVASDVTELRQGYRTLRQDRDLAV------RASQTDELTGTANRRF 152 Query: 118 FISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHPVGDKVIA-FLSDQLVVVFGT 168 + L E++ + DID+FK IND FGH GD V+ F+ VV Sbjct: 153 VFAKLALQVERVGKGLEAPFCLCTLDIDFFKHINDRFGHKCGDAVLRDFVGIAHSVVRRV 212 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 F GR+GGEEF SS E+ + L + + S+ ++ P + SAG+ Sbjct: 213 DCF-GRIGGEEFMLILPRSSVVESREIVERLLQKVRLSR-PLAEFPDFSYSCSAGMTTYR 270 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 E + RADQALY AK+ GR+R++ + Sbjct: 271 MAESADDVFMRADQALYAAKEKGRDRLLAVT 301 >gi|269963669|ref|ZP_06177991.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831581|gb|EEZ85718.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 537 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 91/162 (56%), Gaps = 11/162 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + +++ +D L+ LLN F +L Y + K S+V FDID FK IND +GH GD+ + Sbjct: 377 LKRMAELDPLTQLLNRRVFNDNLLHYINSDVKFSLVGFDIDRFKLINDKYGHLAGDEALL 436 Query: 157 FLSDQLV---VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ +LV ++ G + R GG+EF + + ++E A+ + LR I+ +S S Sbjct: 437 HVT-KLVNANLLDGDRFY--RAGGDEFCILSRVTDKEELAVYLDKLRGIVASSPFEYEST 493 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P I ++S G A ++P ++ ++ D LY +K++GRN V Sbjct: 494 PII-CSLSIGAAVHKDEDP-ESLFHKMDVQLYQSKENGRNSV 533 >gi|163738700|ref|ZP_02146114.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis BS107] gi|161388028|gb|EDQ12383.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis BS107] Length = 598 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 76/165 (46%), Gaps = 8/165 (4%) Query: 107 DCLSGLLNHSAFISSL-----GSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +L S N LSI+ D+D+FK+ NDN GH GD V+ + Sbjct: 410 DPLTGLFNRRHMTETLRKSIGNSQNSGTPLSIIAVDVDHFKKFNDNHGHDAGDMVLRAVG 469 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF G+S+++ A LR+ +E + I+ Sbjct: 470 SVLEQACDGDEVACRPGGEEFTLILPGASQEDVMTKAELLRQAVEAIVVRYGEKALPGIS 529 Query: 220 ISAGIAERCHKEPISTIIYRA-DQALYVAKKSGRNRVVCFSDIEN 263 IS G+A + + RA D+ALY AK GRN+V S E Sbjct: 530 ISLGVAHYPRHGTMPQDLLRASDEALYEAKAKGRNQVCVASSAEQ 574 >gi|163741588|ref|ZP_02148979.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10] gi|161385322|gb|EDQ09700.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10] Length = 598 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 76/165 (46%), Gaps = 8/165 (4%) Query: 107 DCLSGLLNHSAFISSL-----GSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +L S N LSI+ D+D+FK+ NDN GH GD V+ + Sbjct: 410 DPLTGLFNRRHMTETLRKSIGNSQNSGTPLSIIAVDVDHFKKFNDNHGHDAGDMVLRAVG 469 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF G+S+++ A LR+ +E + I+ Sbjct: 470 SVLEQACDGDEVACRPGGEEFTLILPGASQEDVMTKAELLRQAVEAIVVRYGEKALPGIS 529 Query: 220 ISAGIAERCHKEPISTIIYRA-DQALYVAKKSGRNRVVCFSDIEN 263 IS G+A + + RA D+ALY AK GRN+V S E Sbjct: 530 ISLGVAHYPRHGTMPQDLLRASDEALYEAKAKGRNQVCVASSAEQ 574 >gi|254286706|ref|ZP_04961661.1| GGDEF family protein [Vibrio cholerae AM-19226] gi|150423290|gb|EDN15236.1| GGDEF family protein [Vibrio cholerae AM-19226] Length = 359 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 19/164 (11%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G LN L NE I DID+FK +ND +GH GDKVI Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237 Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 Q+V + T + RLGG+EF +S +A ++ + + I+ + Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+AE + RADQALY +KK G+NRV Sbjct: 294 AK----VTVSVGLAEALRTDDPEHWFKRADQALYHSKKMGKNRV 333 >gi|70733064|ref|YP_262837.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68347363|gb|AAY94969.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Pseudomonas fluorescens Pf-5] Length = 707 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 14/158 (8%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F ++ + L +++ D+D FK++ND+ GH GD+V+ ++S Sbjct: 279 DPLTGLLNRRGFYQTVENILLRSDRSGKSLVLLYLDLDGFKRVNDSLGHDAGDRVLRWVS 338 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHI 218 +QL + +GR+GG+EF A S ++AA +A K+IE IN G + + Sbjct: 339 EQLKDCLHSFDILGRMGGDEFTALLELSFPEQAAKIAE---KLIERLSINQQIDGLEVVL 395 Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 S GIA C + ++ AD A+Y AK++GR + Sbjct: 396 GASIGIAIYPDCGSN-LDGLLRAADIAMYEAKRAGRQQ 432 >gi|47569773|ref|ZP_00240445.1| sensory box protein [Bacillus cereus G9241] gi|47553569|gb|EAL11948.1| sensory box protein [Bacillus cereus G9241] Length = 937 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 11/176 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 498 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSANDVAVMFLDLDRFKKINDR 557 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 558 LGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL- 616 Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 617 NKPFFI-QGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVFFS 671 >gi|307132658|ref|YP_003884674.1| GGDEF domain-containing protein [Dickeya dadantii 3937] gi|306530187|gb|ADN00118.1| GGDEF domain protein [Dickeya dadantii 3937] Length = 380 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 14/212 (6%) Query: 48 IFLFYIGLTP-FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI 106 I + +G +P F + E ++L IS+ I+++ G + + K+ I + +R Sbjct: 150 IRVTTLGSSPGFSNIATSSAEIITLACISLMIAVM-GSLLSLVAKKYLIE---LPTTARY 205 Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G L AF S ++ + + DID+FKQ+ND GH GD+ + ++ Sbjct: 206 DDLTGFLRRDAFYQSANRALKAARHESKPMCAMLIDIDHFKQVNDTLGHAAGDEALKAVA 265 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + F + RLGG+EFA S++ A +A +R+ I + SS S IT Sbjct: 266 NVIRHSFRRHDILCRLGGDEFAVVLPNISQENAVRVAERVREGIHELG-HTSSSMSPGIT 324 Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKS 250 +S G +A E + II RAD LY+AK++ Sbjct: 325 VSIGLVAVESPDEGLDEIIRRADVNLYLAKRT 356 >gi|228913316|ref|ZP_04076950.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925816|ref|ZP_04088900.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932055|ref|ZP_04094947.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944380|ref|ZP_04106753.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229120277|ref|ZP_04249528.1| Sensory box/GGDEF [Bacillus cereus 95/8201] gi|228663318|gb|EEL18907.1| Sensory box/GGDEF [Bacillus cereus 95/8201] gi|228815282|gb|EEM61530.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827638|gb|EEM73380.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833831|gb|EEM79384.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846367|gb|EEM91385.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 569 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ + +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF + E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|166711385|ref|ZP_02242592.1| hypothetical protein Xoryp_07950 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 803 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL+N L S ++ F D+D+FK +ND FGH VGDK + Sbjct: 372 ARHDALTGLINRHEIEHRLQLLIELPRSPQMCHALCFVDMDHFKLVNDTFGHAVGDKFLC 431 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +D + + ++GRLGG+EFA + +A L + ++ + G + Sbjct: 432 HFADVITMQLRPGDWLGRLGGDEFAILLANTDLPQARALLEGMHAVLGQPWSH-QGGRPL 490 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + S G+ E R +++++ AD A + AK+ GRNR+ CF++ + Sbjct: 491 TPSCSFGVVEIRQSVSDVNSLMTAADLACHAAKEEGRNRIRCFNETD 537 >gi|331014780|gb|EGH94836.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 278 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ +L+ D L+ + N AF+ S S E ++ DID FK IND GH +GD++ Sbjct: 88 SKFRELAETDYLTSIPNRRAFMESFDSLIKGGESGYLIMLDIDNFKLINDRHGHEIGDRI 147 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L G+ GR+GGEEF G E A + + +++E + N P Sbjct: 148 LCSMAACLRATSGSHC-AGRIGGEEFGVLITGGDELTA---CDYILRLLETVRANFD--P 201 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + SAG+ +S + AD+++Y+AK++G++ Sbjct: 202 PYNYSCSAGMVRFSAASTMSEALSMADKSMYIAKRNGKD 240 >gi|330878551|gb|EGH12700.1| diguanylate cyclase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 501 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 10/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 ++L +S ++ L+ D L+GL N F +L + L+++ DIDYFK+ N Sbjct: 322 QQLILSNRQLELLAMKDALTGLANRRCFDQTLSKEARRAQREGTTLALLMIDIDYFKRFN 381 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD + + + L P V R GGEE + Q A ++A + Sbjct: 382 DTFGHVAGDVCLRAVGEILEESVKRPSDLVARYGGEEMGIIMPNTDGQGATVVAQLIIDR 441 Query: 203 IENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNR 254 +E I +S P +++S GI A + + I AD+ALY AK GRN+ Sbjct: 442 LERKNIRHNSSPFGRVSVSIGIIAAAGSQLDNVMGFIQGADRALYNAKALGRNQ 495 >gi|313201890|ref|YP_004040548.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312441206|gb|ADQ85312.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 821 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 77/157 (49%), Gaps = 13/157 (8%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + IS +N S+ F DID FK++ND+ GH GD++I L Sbjct: 392 DTLTGLANRNLLKERMQQAISEARRHNWTFSVAFIDIDNFKRVNDSMGHSAGDELIRLLG 451 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIH 217 +L V RLGG+EF S E+ + + + I N+ IN I +G + Sbjct: 452 QRLQSCLRDGDTVARLGGDEFVLLLTSQSLDES---IHTVVQRIRNTIINPFIITGRQLT 508 Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 +T S G+A H T++ AD A+Y AK SG N Sbjct: 509 VTCSIGLANFPHDGRNADTLLSNADSAMYQAKASGSN 545 >gi|253999917|ref|YP_003051980.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253986596|gb|ACT51453.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 821 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 77/157 (49%), Gaps = 13/157 (8%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + IS +N S+ F DID FK++ND+ GH GD++I L Sbjct: 392 DTLTGLANRNLLKERMQQAISEARRHNWTFSVAFIDIDNFKRVNDSMGHSAGDELIRLLG 451 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--ISSGPSIH 217 +L V RLGG+EF S E+ + + + I N+ IN I +G + Sbjct: 452 QRLQSCLRDGDTVARLGGDEFVLLLTSQSLDES---IHTVVQRIRNTIINPFIITGRQLT 508 Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 +T S G+A H T++ AD A+Y AK SG N Sbjct: 509 VTCSIGLANFPHDGRNADTLLSNADSAMYQAKASGSN 545 >gi|254457672|ref|ZP_05071100.1| signal transduction protein containing diguanilate cyclase/phosphodiesterase domain [Campylobacterales bacterium GD 1] gi|207086464|gb|EDZ63748.1| signal transduction protein containing diguanilate cyclase/phosphodiesterase domain [Campylobacterales bacterium GD 1] Length = 297 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 2/127 (1%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +IV DID+FKQIND +GH VGD+V+ +S V V R GGEEF ++ Sbjct: 171 TIVMADIDHFKQINDKYGHQVGDEVLVEISKLFVEHIRAYDIVARYGGEEFVFFIYSDAK 230 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 + I + K++++ I + I + S G+A+ K I ++ AD+ALY AKK Sbjct: 231 ETMTIFKR-IEKMLQDQIFEIYNHK-IELKCSFGMAQDRDKLSIYELVSLADKALYEAKK 288 Query: 250 SGRNRVV 256 GRN++V Sbjct: 289 LGRNQIV 295 >gi|153835904|ref|ZP_01988571.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ3810] gi|149750658|gb|EDM61403.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ3810] Length = 527 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 91/192 (47%), Gaps = 17/192 (8%) Query: 76 ITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS---YNEK 128 + + L+L I LKE + N ++QL + D L+ L N L ++ Sbjct: 337 LQLKLILSEIENKELKETTKQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDMLLHDTP 396 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184 +++ DID+FK IND H VGDK I +S +L F F G R GGEEF Sbjct: 397 FALMVIDIDHFKSINDELSHLVGDKAIKSVSQELAAYFK---FKGASCVRFGGEEFLVIL 453 Query: 185 LGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 S + A + A + R +I + + +I +T+S GI E YRAD+A Sbjct: 454 ENSQLERAEMHAENYRERIFKYAWRDILGERG--LTVSIGITLHREGENTQRTFYRADKA 511 Query: 244 LYVAKKSGRNRV 255 LY AK +GRN+V Sbjct: 512 LYRAKANGRNQV 523 >gi|71737976|ref|YP_273180.1| GGDEF domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558529|gb|AAZ37740.1| GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 367 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 23/211 (10%) Query: 68 NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120 N L + ++ + L+ Y S + LF R+ Q+ +R D L+ L N Sbjct: 161 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 220 Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 + S E+ ++I+ DID+FK NDN+GHP GD + L ++ V Sbjct: 221 VMTSVWERARKTPANVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENDAVA 280 Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231 R GGEE G + Q A +A+ L+ + ++ + + G S +T+S G+A C Sbjct: 281 FRFGGEEVLVLMNGDAGQ-AREMADVLQAAVAALKLPHPALGESAFVTVSLGVA--CATA 337 Query: 232 PIST---IIYRADQALYVAKKSGRNRVVCFS 259 P +T +I AD ALY AK++GRN VCF+ Sbjct: 338 PQTTADHLISAADNALYAAKRAGRN-CVCFA 367 >gi|49476849|ref|YP_034886.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144683|ref|YP_082145.1| sensory box, GGDEF family protein [Bacillus cereus E33L] gi|196035756|ref|ZP_03103159.1| sensory box/GGDEF family protein [Bacillus cereus W] gi|218901822|ref|YP_002449656.1| sensory box/GGDEF family protein [Bacillus cereus AH820] gi|254722098|ref|ZP_05183887.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055] gi|49328405|gb|AAT59051.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978152|gb|AAU19702.1| sensory box, GGDEF family protein [Bacillus cereus E33L] gi|195991723|gb|EDX55688.1| sensory box/GGDEF family protein [Bacillus cereus W] gi|218539049|gb|ACK91447.1| sensory box/GGDEF family protein [Bacillus cereus AH820] Length = 567 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ + +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF + E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|330465958|ref|YP_004403701.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris AB-18-032] gi|328808929|gb|AEB43101.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris AB-18-032] Length = 774 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R+ L+ +D L+GL N AF L S + ++++ D+D FKQ+ND FGH GD ++ Sbjct: 335 RLRHLAYVDQLTGLPNRLAFTRRLRSALGGAQPVAVLLLDLDGFKQVNDRFGHSTGDTLL 394 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 LS ++ + R+GG+EFA G + LA L + S G Sbjct: 395 TGLSRRMRRAVADDGMIARIGGDEFAVLVTGRTAAPER-LAERLLASLHPSAGEEVVG-- 451 Query: 216 IHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253 +H + S GIAE + T + R AD A+Y AK +G++ Sbjct: 452 VHPSASIGIAEYGPQHVTYTDLLRDADIAMYAAKAAGKS 490 >gi|297171114|gb|ADI22125.1| FOG: GGDEF domain [uncultured myxobacterium HF0200_19H16] Length = 370 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 24/186 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 KEL + ++ +L+ D L+G+ NH F SL S + + ++F D+DYFK N Sbjct: 168 KELQEANEKLRELALRDGLTGVYNHRFFQESLSSELARAARHQHSVGLLFIDVDYFKNFN 227 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMF---------VGRLGGEEFAAAALGSSEQEAAI 194 D GH GD ++ L L P + R GGEEF ++++ + + Sbjct: 228 DMAGHQAGDALLRQLGKMLSNAGDDPDYRYGGRCSDITARYGGEEFVIILPETNKENSIV 287 Query: 195 LANDLRKIIENSQINISS-GPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKK 249 A +R +IE + P +T S G++ + K+ +I AD+ALY+AK+ Sbjct: 288 RAERVRMMIEEYPFEMREVQPEKKVTASIGVSIYPDDALTKQ---ALIKVADEALYIAKR 344 Query: 250 SGRNRV 255 +GRN+V Sbjct: 345 NGRNQV 350 >gi|301167943|emb|CBW27529.1| putative two-component response regulator with GGDEF sensory box protein [Bacteriovorax marinus SJ] Length = 303 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 93/171 (54%), Gaps = 12/171 (7%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 ++Y+++S + D +G N + F + + LS++ FD+D+FK +NDN+G Sbjct: 129 LTYDKLSMEANTDGHTGCYNKTYFNNRIELEVKKSKVTGDPLSLILFDLDHFKSLNDNYG 188 Query: 148 HPVGDKVIAFLSD--QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 H GD V+ L+D + V +F R GGEEF ++ +++ +A LRK++++ Sbjct: 189 HDAGDFVLKELADVIRGGGVRDNDVFA-RYGGEEFVILLPKTNLKQSFEIAERLRKLVQD 247 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 N G + +T S G+A+ R + + RAD+++Y +K+ GRN+V Sbjct: 248 HDFNY-EGKILPVTASIGVADYRQGVTSGTELFKRADESVYKSKEGGRNQV 297 >gi|260901119|ref|ZP_05909514.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|308109406|gb|EFO46946.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] Length = 527 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 91/192 (47%), Gaps = 17/192 (8%) Query: 76 ITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS---YNEK 128 + + L+L I LKE + N ++QL + D L+ L N L ++ Sbjct: 337 LQLKLILSEIENKELKETTKQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDMLLHDTP 396 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184 +++ DID+FK IND H VGDK I +S +L F F G R GGEEF Sbjct: 397 FALMVIDIDHFKSINDELSHLVGDKAIKSVSQELAAYFK---FKGASCVRFGGEEFLVIL 453 Query: 185 LGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 S + A + A + R +I + + +I +T+S GI E YRAD+A Sbjct: 454 ENSQLERAEMHAENYRERIFKYAWRDILGERG--LTVSIGITLHREGENTQRTFYRADKA 511 Query: 244 LYVAKKSGRNRV 255 LY AK +GRN+V Sbjct: 512 LYRAKANGRNQV 523 >gi|163751104|ref|ZP_02158334.1| GGDEF domain protein [Shewanella benthica KT99] gi|161329060|gb|EDQ00132.1| GGDEF domain protein [Shewanella benthica KT99] Length = 127 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 2/124 (1%) Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 FDID FK IND +GH +GD I S + VGR+GGEEF +S++EA Sbjct: 1 MFDIDNFKSINDRYGHHIGDLAIKAASKRTRRWLKKHDLVGRIGGEEFLIVLENTSKKEA 60 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSG 251 +A+ +R IE +Q+ ++ TIS G+A H + ++ +AD ALY AK SG Sbjct: 61 YNIADRIRHGIE-TQVFQFDDVTVEFTISLGVAALNEHTTSLLGLMKQADDALYRAKFSG 119 Query: 252 RNRV 255 +N+V Sbjct: 120 KNKV 123 >gi|90413448|ref|ZP_01221440.1| hypothetical GGDEF family protein [Photobacterium profundum 3TCK] gi|90325536|gb|EAS42013.1| hypothetical GGDEF family protein [Photobacterium profundum 3TCK] Length = 413 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 21/170 (12%) Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 ID L+ + A + L + + ++ DID+FK+ ND +GH GD V+ ++ QL+ Sbjct: 243 IDQLTNIPGRRALETELRNLGKTYTLAMLDIDHFKKFNDLYGHKTGDNVLTLVA-QLITK 301 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS------- 215 G + R GGEEF G ++ LR I + N + P Sbjct: 302 VGGGAQMFRYGGEEFTILFKGKKSEQCEEHLEKLRIAIAEYNLVLRNYAERPDNDKQGCM 361 Query: 216 ----------IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IH+T+S GIA+ ++ AD ALY AK+SGRNR+ Sbjct: 362 TRKNNVIHSYIHVTVSIGIADSKPTSNPDMVLKAADDALYRAKESGRNRL 411 >gi|33601766|ref|NP_889326.1| hypothetical protein BB2790 [Bordetella bronchiseptica RB50] gi|33576203|emb|CAE33282.1| Conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 315 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 11/160 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N F SS E+ LS++ FD+DYFKQ ND +GH GD+ + ++ Sbjct: 149 DGLTNIANRRRFDSSFDLEWERARHERQPLSMLLFDVDYFKQYNDLYGHTQGDECLVEIA 208 Query: 160 DQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---S 215 L + P V R GGEEF + + A +A +++IE I + P Sbjct: 209 QTLSLALDGPRDLVARYGGEEFVVLLPEADAEVARKVAERCQRLIEKKSIVHALSPHGRR 268 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ++I AG + + I DQ LY AKK+GR+R+ Sbjct: 269 VTVSIGAGTVVPGGQTAPAGFIKAVDQQLYAAKKNGRHRI 308 >gi|65318053|ref|ZP_00391012.1| COG5001: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Bacillus anthracis str. A2012] Length = 569 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ + +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF + E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|330504353|ref|YP_004381222.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328918639|gb|AEB59470.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 394 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 21/234 (8%) Query: 30 YFSIFFSIFIATVIFIANIFLFYIGLTPFYGL--EYILVEN-LSLVIISITISLLLGYIS 86 Y + +F A A I I L F GL + LVE ++L++I+++++ Sbjct: 152 YVLLMHGLFYAAKAMTAVIPGALIDLNAFRGLIIQVSLVEGAMALMLIALSMT------- 204 Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFK 140 G++ + RI +L+ D L+ L N A + G ++ S ++ DID FK Sbjct: 205 GTVR---WRREKRIERLAARDPLTALYNRRALEARAGKLLKETSPTRPGALLLIDIDNFK 261 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND GH GD+++ L + L + RLGG+EF +S L + LR Sbjct: 262 QVNDLHGHLAGDRLLIALGEMLRALLPERALTARLGGDEFVILMDDASNARVVALGDALR 321 Query: 201 KIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + + P ++ ++I A + +R ++ +I + D ALY +K+ GRN Sbjct: 322 QRFNHMAAQAFATPQAVTLSIGATLFDRPPAS-LAALIEQGDTALYQSKRGGRN 374 >gi|311279803|ref|YP_003942034.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Enterobacter cloacae SCF1] gi|308748998|gb|ADO48750.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Enterobacter cloacae SCF1] Length = 663 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 14/182 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 SG+ + E + R+ L+ D ++GL N +A IS ++ + +E ++ IV+ D+D FK Sbjct: 219 SGTDITEERRAQERLRVLANTDTITGLPNRNAINDMISEAIATRDETQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 ++ND +GH GD+++ ++ ++ + RLGG+EF A +S E A+ + Sbjct: 279 KVNDAYGHMFGDQLLQSVALSILSCLEEGQTLARLGGDEFIVLATNTSQGALEAMASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 N LR+ I + SG S+ I+++ H ++I AD A+Y AK+ GR + Sbjct: 339 NRLREPFRIGLIEVYSGCSLGISLAPQ-----HGSDRESLIRNADTAMYTAKEGGRGKFC 393 Query: 257 CF 258 F Sbjct: 394 VF 395 >gi|253996788|ref|YP_003048852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253983467|gb|ACT48325.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera mobilis JLW8] Length = 651 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 41/190 (21%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 S +++ L+ D L+GL N F+ +K ++++F D+D FK++ND+ GH Sbjct: 211 SEAQVTHLAHYDQLTGLPNRVLFLDRFKQDIKKAQRTGQIVTLMFLDLDKFKEVNDSLGH 270 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 +GD ++ ++ +L V R+GG+EF I+ ND+ NSQ+ Sbjct: 271 DIGDMLLKDVARRLENCVRDSDTVARMGGDEF------------TIILNDI-----NSQV 313 Query: 209 NIS----------------SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSG 251 NI IH++ S GI+ + + ++ ADQA+YVAK+ G Sbjct: 314 NIERIAQDILNQLTMPFHLGDEVIHVSTSIGISNYPKDDTEVELLLKNADQAMYVAKEQG 373 Query: 252 RNRVVCFSDI 261 RNR F+ + Sbjct: 374 RNRYQYFTPV 383 >gi|190574226|ref|YP_001972071.1| putative transmembrane GGDEF EAL domain signalling protein [Stenotrophomonas maltophilia K279a] gi|190012148|emb|CAQ45771.1| putative transmembrane GGDEF EAL domain signalling protein [Stenotrophomonas maltophilia K279a] Length = 711 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 78/146 (53%), Gaps = 15/146 (10%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 + +++F D+D FKQ+ND +GH GD ++ ++++ + + RLGG+EF Sbjct: 300 RFAVMFMDLDGFKQVNDAYGHQAGDALLVAVAERTRQLLRPHDMLARLGGDEFVLVVRIE 359 Query: 188 SEQEAAILANDLRKIIENSQINISSGP-----SIHITISAGIAERC--HKEPISTIIYRA 240 +++ LA R+I++ + SGP + +T S G+A C H ++ A Sbjct: 360 HDEDLPTLA---RRILQ----AVGSGPLLPDNELQVTASIGVAI-CPDHAASERQLMAFA 411 Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266 D A+Y AK+SGRN V F+D NN+ Sbjct: 412 DAAMYQAKESGRNAFVLFADWMNNSA 437 >gi|157737788|ref|YP_001490472.1| EAL/GGDEF domain-containing protein [Arcobacter butzleri RM4018] gi|157699642|gb|ABV67802.1| EAL/GGDEF domain protein [Arcobacter butzleri RM4018] Length = 851 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N F I +N +++ D D FK INDNFGH GD ++ ++ Sbjct: 436 DPLTDLFNQRVFNDMMRYEIKRAQRHNYSFALMVIDCDNFKPINDNFGHSFGDTLLQTVA 495 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GG+EF +E+EA I+AN + K + +I G +I IT Sbjct: 496 TTLKKEKRDEDIVARYGGDEFTIILPECTEKEAMIVANRISKKMATEKIVAPDGSNIGIT 555 Query: 220 ISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS GI H + AD +Y AK+ G+N + Sbjct: 556 ISIGICVYPTHTTSQKDMFIIADSMMYQAKEEGKNAI 592 >gi|90021242|ref|YP_527069.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89950842|gb|ABD80857.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 234 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 83/179 (46%), Gaps = 20/179 (11%) Query: 97 YNRISQL-SRI---------DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYF 139 YN I QL SRI D L+GL N F S+ E+ S+ D+D+F Sbjct: 32 YNHIQQLESRIAELTEQVNTDSLTGLYNRKHFNESIAQELERTQRSRQPTSLALIDLDHF 91 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K +ND GH GD+V+ ++ + R GGEE A + + A+ +A L Sbjct: 92 KVVNDTHGHIAGDEVLKAVAKAIGNTIRKLDIACRYGGEEIAVIFPSTYQLVASQVAERL 151 Query: 200 RKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 R+ IEN +N G +I IT S G+ KE I R DQ LY AK GRNRV Sbjct: 152 RQAIENCTVN-HGGSTIPITASIGVDTYTAQSKETAVQFIERVDQLLYDAKHLGRNRVA 209 >gi|28901333|ref|NP_800988.1| GGDEF family protein and [Vibrio parahaemolyticus RIMD 2210633] gi|260362889|ref|ZP_05775758.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|260880177|ref|ZP_05892532.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|260895294|ref|ZP_05903790.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|28809880|dbj|BAC62821.1| GGDEF family protein and [Vibrio parahaemolyticus RIMD 2210633] gi|308085653|gb|EFO35348.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|308092633|gb|EFO42328.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|308111967|gb|EFO49507.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|328469270|gb|EGF40216.1| GGDEF family protein and [Vibrio parahaemolyticus 10329] Length = 527 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 91/192 (47%), Gaps = 17/192 (8%) Query: 76 ITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS---YNEK 128 + + L+L I LKE + N ++QL + D L+ L N L ++ Sbjct: 337 LQLKLILSEIENKELKETTKQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDMLLHDTP 396 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAA 184 +++ DID+FK IND H VGDK I +S +L F F G R GGEEF Sbjct: 397 FALMVIDIDHFKSINDELSHLVGDKAIKSVSQELAAYFK---FKGASCVRFGGEEFLVIL 453 Query: 185 LGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 S + A + A + R +I + + +I +T+S GI E YRAD+A Sbjct: 454 ENSQLERAEMHAENYRERIFKYAWRDILGERG--LTVSIGITLHREGENTQRTFYRADKA 511 Query: 244 LYVAKKSGRNRV 255 LY AK +GRN+V Sbjct: 512 LYRAKANGRNQV 523 >gi|320155462|ref|YP_004187841.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus MO6-24/O] gi|319930774|gb|ADV85638.1| C-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus MO6-24/O] Length = 657 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 12/171 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFF--DIDYFKQINDNFGHPV 150 ++++QL+ D L+GL N S + SL S +E+ V F D+D FK IND+ GH + Sbjct: 206 SQLNQLAYFDTLTGLANRSLLLKSLNETLKESQSEQYPGVLFYLDLDRFKTINDSLGHTI 265 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ ++ +L R+GG+EFA ++++AA A L +I N +I Sbjct: 266 GDNLMRTIAKRLEAWLQPGEIAARIGGDEFAILIPKLNKEDAANKAKQLLTLISNP-YSI 324 Query: 211 SSGPSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVVCFS 259 ++ T+S GI+ K IS+I + +AD ALY AK +GRN+ + + Sbjct: 325 DDH-QLYCTVSIGISTFADK-GISSIDVLRQADTALYRAKVAGRNKYMFYE 373 >gi|307608779|emb|CBW98168.1| hypothetical protein LPW_00301 [Legionella pneumophila 130b] Length = 976 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N+KL+++F D+D FKQIND+ GH +GD ++ LS++ + + + RLGG+EF Sbjct: 580 NQKLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILE 639 Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243 +++A I+A R+I SQ + + ++ S GIA H + T++ AD A Sbjct: 640 NIMQDKDAEIIAKKCREIC--SQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTA 697 Query: 244 LYVAKKSGRNRVVCFSD 260 +Y +K G+N F + Sbjct: 698 MYQSKIRGKNNWTVFQN 714 >gi|302531697|ref|ZP_07284039.1| predicted protein [Streptomyces sp. AA4] gi|302440592|gb|EFL12408.1| predicted protein [Streptomyces sp. AA4] Length = 496 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D +GLLN F + + + +++ DID FK N GHP GDKV+ ++ Sbjct: 298 DARTGLLNRRGFDALAAAAVDLDHANGQPTTMLMLDIDRFKWWNSRIGHPGGDKVLEAVA 357 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ---INISSGPSI 216 L + R GGEE A G+ +A +A +R+ +E + +N + G +I Sbjct: 358 TVLRTETRAGDILARTGGEEMAVVLPGTEWTKAVDIAERIRRSVEKLETKVVNPAGGDTI 417 Query: 217 HI--------TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + TIS G+A + I+ + +DQAL VAK++GRN+VV + Sbjct: 418 RLGHDGLPRCTISIGVATSPEQGTDIAALERYSDQALEVAKQNGRNQVVALA 469 >gi|289207865|ref|YP_003459931.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] gi|288943496|gb|ADC71195.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] Length = 1301 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 12/173 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 L L S N + L++ D L+ L N S + LG E+ L+++ D+D FK + Sbjct: 851 LSALKRSQNELEYLAQHDSLTDLPNRSQLQTLLGRALERARAERRGLAVLCLDLDRFKTL 910 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+ GH VGD+V+ ++ +L V +P +GRLGG+EF A + E A R + Sbjct: 911 NDSLGHSVGDRVLLEVARRLADVLESPDLLGRLGGDEFLAVLESADTHELA--EERARAL 968 Query: 203 IENSQ--INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252 +E Q + G +++ S G++ + + +I AD A+Y AK GR Sbjct: 969 LEVLQRPFVLDDGQVVYVNASIGVSRFPADGDTVVDLIQHADAAMYHAKALGR 1021 >gi|255593783|ref|XP_002535949.1| conserved hypothetical protein [Ricinus communis] gi|223521420|gb|EEF26433.1| conserved hypothetical protein [Ricinus communis] Length = 237 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 39/203 (19%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------------NEKLS-------- 130 +F +Y + S D L+GL N F Y +E+ Sbjct: 27 VFCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAPHEAHSMEQDERRHDSAEAQDD 86 Query: 131 ------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + DID+FKQ+ND +GH GD+V+ +++ L F + + R GGEEF Sbjct: 87 EPKGHWLAVVDIDHFKQVNDRYGHLYGDEVLILVANILRASFRSHDRIFRFGGEEFVILL 146 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSG--PSI-HITISAGIAERCHKEPISTIIYRAD 241 ++ +D RKI + + N+ P + +T+S G + P+ I+ AD Sbjct: 147 RSTT-------LSDARKIFDRFRQNVQEYDFPQVGKVTVSLGFVGIARETPV-VILGHAD 198 Query: 242 QALYVAKKSGRNRVVCFSDIENN 264 QALY AKK+GRNR+ + ++ N+ Sbjct: 199 QALYHAKKTGRNRICYYQELVNS 221 >gi|254458212|ref|ZP_05071638.1| sensory box/ggdef family protein [Campylobacterales bacterium GD 1] gi|207085048|gb|EDZ62334.1| sensory box/ggdef family protein [Campylobacterales bacterium GD 1] Length = 505 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 13/168 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I ++S D L+ + N F I + NE + + D+D+FKQ ND +GH +GD Sbjct: 329 IEKISITDGLTNIYNRRHFDNLFPQIIKTSRRNNELVCFLIMDVDHFKQYNDTYGHQMGD 388 Query: 153 KVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 V+ L+ L + RLGGEEF S+Q+A I+AN LR+ IE+ +I Sbjct: 389 GVLIDLATVLTNNLKRDDDYCFRLGGEEFGVLFKSDSKQKAEIIANKLRESIEDLKIE-H 447 Query: 212 SGPSIHITISAGIAERCHKEP---ISTIIYR-ADQALYVAKKSGRNRV 255 G S ++A + C K +Y+ AD LY AK++GRN+V Sbjct: 448 KGNSASSFVTASVGLVCLKAQDIVDEAQVYKMADDLLYQAKENGRNKV 495 >gi|254459065|ref|ZP_05072488.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207084336|gb|EDZ61625.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 620 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 9/175 (5%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFFDIDYF 139 IS + + I + + + S D L+G LN F +++ S Y EK+ IV DID+F Sbjct: 446 ISFTDISNTMIEHTNLKRKSTHDKLTGALNREFFDNNIKSIIKDMYPEKMGIVLCDIDHF 505 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K +ND +GH GD V+ + + ++ R GGEEF ++ + Sbjct: 506 KDVNDTYGHNRGDNVLKEFTTIIKDSIRDSDYLIRWGGEEFIVLMKVNTIDSLQRATEHM 565 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 RK IE+ + G IT S GI E I + R D+ALY AK +GRN+ Sbjct: 566 RKHIESYKFE-EVGT---ITSSFGITLHIENEKILDTLERVDKALYKAKNNGRNQ 616 >gi|209548847|ref|YP_002280764.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534603|gb|ACI54538.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 709 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 90/180 (50%), Gaps = 31/180 (17%) Query: 98 NRISQLSRI-------DCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQIND 144 R+ QL++ D LSGLLN +S S GS +L +V D+D FK +ND Sbjct: 281 RRLRQLAQAALFEAGHDSLSGLLNRHGLLSLLEEFKSSGSSPPRLYLV--DLDGFKAVND 338 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII- 203 +GH VGD +I +S+ L + RLGG+EFA +GS+ E D+ K I Sbjct: 339 AWGHAVGDDLIRLVSNALTACHPEVVAAARLGGDEFALVHVGSATCE------DMEKTIL 392 Query: 204 ----ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 E +I+ G +I + S G A EP+ ++ RAD ALY AK +GR + + + Sbjct: 393 ALFAEPFKID---GRTIEVGASIGAAAGDAGIEPLE-LLRRADMALYRAKANGRGQAIEY 448 >gi|148975939|ref|ZP_01812728.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrionales bacterium SWAT-3] gi|145964684|gb|EDK29937.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrionales bacterium SWAT-3] Length = 357 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 6/134 (4%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAA 183 K ++ DID+FK +ND +GH +GD V+ +++ L FV R GGEEF + Sbjct: 213 KGTLAVVDIDFFKSVNDGYGHQMGDVVLKKVANVLSSNAQEGEFVARFGGEEFVIWYPST 272 Query: 184 ALGSSEQEAAILANDLRKI-IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQ 242 + + E + A L +++KI ++ I IS G + H +S+G + ++I AD+ Sbjct: 273 PVNTVEDKLATLLEEVKKITLDRKPITISIG-ACHFELSSGETRNERMSALDSLIKVADE 331 Query: 243 ALYVAKKSGRNRVV 256 LYVAKK+GR++ V Sbjct: 332 CLYVAKKNGRDQFV 345 >gi|120613376|ref|YP_973054.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gi|120591840|gb|ABM35280.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 377 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 13/176 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143 +E+ +++ + + D L+GL N ++ I+ G+ LS++ DID+FK+IN Sbjct: 199 EEIRALQDQLQEQAVRDPLTGLYNRRHLDATLASEIARCGAQGLPLSLMMIDIDHFKRIN 258 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD ++ L+ L RLGGEEF + A A LR+ Sbjct: 259 DTHGHAAGDAMLQALAQLLQRHVRVRDLACRLGGEEFVLLLPETPLAVARERAEALREAF 318 Query: 204 ENSQINISSGPSI-HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E Q+ P + T+S G+A + ++P++ + AD+ALY AK GRNRVV Sbjct: 319 EALQVR--HDPEVLSATLSCGVAAFPQHARQPLA-LTASADEALYAAKMQGRNRVV 371 >gi|222055390|ref|YP_002537752.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] gi|221564679|gb|ACM20651.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] Length = 912 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 27/179 (15%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 + I QL+ D L+GL N S LG N K++I+F D+D FK IND GH Sbjct: 476 DEIQQLAYYDTLTGLPNRSLLQDRLGQGIVQAVRDNRKVAIMFLDLDRFKSINDTLGHVA 535 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIEN--- 205 GD ++A ++++L V R+GG+EF +A+ +E DL KI E Sbjct: 536 GDSLLATVAERLTECVRETDTVARIGGDEFVIIISAIEHAE--------DLNKIAEKILA 587 Query: 206 --SQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259 S+ + + I IT S GIA + E + ++ AD A+Y AK G+N FS Sbjct: 588 AISKPLVLNDQEIFITASIGIA--IYPEDGTDVQGLLKNADLAMYKAKDQGKNAFQYFS 644 >gi|325918920|ref|ZP_08180991.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325534854|gb|EGD06779.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 375 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 16/200 (8%) Query: 71 LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125 +VI ++ +LLLG ++ L+ + + ++S + +D L+G+ N AF L Sbjct: 175 VVIATLGCALLLGVGIWLDLQ-LRRMHRNEAKLSSEAWVDALTGIANRRAFDHQLSQALQ 233 Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179 LS++ D+D+FK ND +GH GD + ++ + + R GGEE Sbjct: 234 EAVRLQSPLSVLMLDVDHFKLYNDTYGHVNGDACLRLIAGAITGCARRSNDVAARYGGEE 293 Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAERCHKE-PIST-- 235 F + A LA+ +R + E +++SS S H+T+S G A E P+S+ Sbjct: 294 FGMILTHTDAAGALRLADAVRSAVAELGLMHLSSPTSAHVTVSVGAATFEPGEVPMSSDD 353 Query: 236 IIYRADQALYVAKKSGRNRV 255 I++ AD ALY AK+ GR+R Sbjct: 354 IVHDADSALYRAKQRGRDRA 373 >gi|258622585|ref|ZP_05717607.1| GGDEF regulator [Vibrio mimicus VM573] gi|258585285|gb|EEW10012.1| GGDEF regulator [Vibrio mimicus VM573] Length = 314 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 20/183 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D LS L N F L +E L++V DID FK+ ND+FGH GD Sbjct: 135 LDKMAHTDSLSSLANRLKFDEQLNVEFRRSRRQSEPLTVVMVDIDEFKKFNDHFGHIAGD 194 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + I ++ L + P R GGEEFA + E+ A + N+L +E Q+ I+ Sbjct: 195 ECIRKIAHTLRSITKRPADLAARYGGEEFALILPSTEEEGAKSMVNELINAVE--QLEIA 252 Query: 212 SGPSIH---ITISAG----IAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIE 262 P +T+S G E+ E + + AD ALY +K++GRN+ F I Sbjct: 253 HSPEAMNQCVTVSVGYTVLYPEQVDFEQLKAVDVAQTADNALYTSKRNGRNQAT-FEPIP 311 Query: 263 NNT 265 T Sbjct: 312 TTT 314 >gi|253732806|ref|ZP_04866971.1| ABC superfamily ATP binding cassette transporter, binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|253729171|gb|EES97900.1| ABC superfamily ATP binding cassette transporter, binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|320139920|gb|EFW31781.1| diguanylate cyclase domain protein [Staphylococcus aureus subsp. aureus MRSA131] Length = 280 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 NR + D L+GL N F L + K ++++ DID FK +ND + H Sbjct: 106 NRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKS 165 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + R GGEEF+ S ++ LA ++R +E S ++ Sbjct: 166 GDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHL 225 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 + I +++S G+ +P S + AD ++VAK GRN+V+ Sbjct: 226 PNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVM 273 >gi|194444703|ref|YP_002040953.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403366|gb|ACF63588.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 663 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|330968247|gb|EGH68507.1| GGDEF domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 493 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 11/191 (5%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGS 124 LS+V+ I + L+ + S +L ++ L+R D LSGLLN F ++ L Sbjct: 30 LSMVVPFILLKRLMQRLQTSY-NDLLVAQALSDSLARHDPLSGLLNRRVFNEQLVARLQQ 88 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAA 183 + + ++ D+D FK IND GH +GD I +++ L G V RLGG+EF+ A Sbjct: 89 ESTQTAVFLIDLDKFKLINDTHGHAMGDAAICAVAESLRDATTGWQASVARLGGDEFSLA 148 Query: 184 ALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRAD 241 G Q E A LA ++ I S + P + ++ + G+A ++ RAD Sbjct: 149 VSGDFSQFELAALAENVLAKIAMSSAGL---PRVTLSATLGVAISPLDGSDAEVLLQRAD 205 Query: 242 QALYVAKKSGR 252 A+Y K GR Sbjct: 206 SAMYRGKNGGR 216 >gi|330719962|gb|EGG98419.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [gamma proteobacterium IMCC2047] Length = 346 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNE---KLSIVFFDIDYFKQ 141 ++K+L + SQ +R D L+ N AF + ++ Y S+ DID FK Sbjct: 173 VVKDLTEEHELKSQ-ARTDSLTHANNRRAFDDALLETINRYKRVGTAFSLALIDIDDFKI 231 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND GH GD+V+ L+ ++ +F F R GGEEFA ++ A + R Sbjct: 232 INDTMGHEYGDEVLVRLAQRVAGLFRGRYFFARWGGEEFALIMEATNVDGALEICEKTRA 291 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E Q+ + S+ +TIS GIAE + ++ AD+ALY +K+ G+N+ Sbjct: 292 AVE--QLFLPD--SVSVTISLGIAEHREEMGAEQLVDCADKALYQSKQQGKNQT 341 >gi|237798210|ref|ZP_04586671.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021062|gb|EGI01119.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 712 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEK----LSI 131 +++L + S++++L Y ++ + + D L+GLLN ++ S NE+ L + Sbjct: 254 AMVLTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNEQADKYLVV 310 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ +++ Q + R+GG+EF L E Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAQQFKDCMRPYDVLARVGGDEFTVVIDGLDYPE 370 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 371 QAAKIAEKLIDRVSGRRQVD---GVDITVGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426 Query: 248 KKSGRNR 254 K++GR + Sbjct: 427 KRAGRQQ 433 >gi|254459398|ref|ZP_05072819.1| ggef/eal/pas/pac-domain containing protein [Campylobacterales bacterium GD 1] gi|207084011|gb|EDZ61302.1| ggef/eal/pas/pac-domain containing protein [Campylobacterales bacterium GD 1] Length = 835 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 10/172 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 N++ +L+ D L+G N + S L N+ +++ D+D+FK IND++GH + Sbjct: 406 NKLERLANFDTLTGFANRTFLFSYLQKVVHRCKRNNKIAALLVLDMDHFKDINDSYGHDI 465 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209 GD+++A ++ +L F+ RL G++FA ++ +AA+ A ++ + +E Sbjct: 466 GDELLALIAKRLSTRIRGGDFIARLDGDKFAIILEDINNSDDAAMFAKEIMEEVEKP-FY 524 Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S+ +HI +AGI + E +I AD ALY KK R + +SD Sbjct: 525 LSNTSEVHICSTAGIVIAPENAETAEELIQFADTALYKGKKDKRGGISYYSD 576 >gi|170759024|ref|YP_001786604.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum A3 str. Loch Maree] gi|169406013|gb|ACA54424.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum A3 str. Loch Maree] Length = 419 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 25/217 (11%) Query: 56 TPFYGLEYILVENLSLVIISITISL-LLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 T FYG E + +I+I L + YI + E I ++ Q++ D L+ L N Sbjct: 216 THFYGEE-------TTKLINIEGELGIATYIRD--ITERKIYNDKTKQMAYFDSLTELPN 266 Query: 115 HSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 ++F+ L L+I+F D+D FK++NDNFGH GDK++ ++ ++ Sbjct: 267 RNSFLKQLEHEIKLSRKKQNLLAIMFLDLDKFKEVNDNFGHCTGDKLLWQVAKRVKNTIS 326 Query: 168 TPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA- 225 + + R GG+EF + E++ LA D+ ++ + I I G ++I S GI+ Sbjct: 327 SKDLIARFGGDEFTILIRNIAHEKQVEDLARDIIEVFKEP-ICI-EGIYVNIKTSIGISF 384 Query: 226 --ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + H +I +AD+A+Y AKK G N+ + D Sbjct: 385 FPKDGH--TSQELIKKADKAMYDAKKRGSNKFQIYKD 419 >gi|83716280|ref|YP_438410.1| GGDEF domain-containing protein [Burkholderia thailandensis E264] gi|167614862|ref|ZP_02383497.1| GGDEF domain protein [Burkholderia thailandensis Bt4] gi|257141447|ref|ZP_05589709.1| GGDEF domain-containing protein [Burkholderia thailandensis E264] gi|83650105|gb|ABC34169.1| GGDEF domain protein [Burkholderia thailandensis E264] Length = 462 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 11/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 + L+ ++ + + + D L+ + N S F + +N +++V D+D+FKQ N Sbjct: 275 RRLYDAHASLVRTASHDALTMVYNRSYFNEQFERAFDYVRRHNLPIALVMVDVDHFKQYN 334 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD +A ++ L V FV R GGEEFA G+ E+ AA +A R+ Sbjct: 335 DTFGHLQGDTCLAAVAAALSGVASRAADFVARYGGEEFAVVLPGTDERGAAAIAEQARQS 394 Query: 203 IENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 +E +I + P ++T+SAG A E ++ AD ALY AK GRN Sbjct: 395 VERLRIAADTSPG-YVTVSAGYAATSGNPFETPGALVAAADAALYRAKMLGRN 446 >gi|30260782|ref|NP_843159.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47525907|ref|YP_017256.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183620|ref|YP_026872.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] gi|165872950|ref|ZP_02217573.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167635210|ref|ZP_02393526.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|170689008|ref|ZP_02880208.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|170708489|ref|ZP_02898931.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|190568528|ref|ZP_03021434.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227816502|ref|YP_002816511.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|229604486|ref|YP_002865226.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] gi|254684295|ref|ZP_05148155.1| sensory box/GGDEF family protein [Bacillus anthracis str. CNEVA-9066] gi|254742030|ref|ZP_05199717.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B] gi|254754984|ref|ZP_05207018.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum] gi|254762284|ref|ZP_05214128.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia 94] gi|30254231|gb|AAP24645.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47501055|gb|AAT29731.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177547|gb|AAT52923.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] gi|164711304|gb|EDR16858.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167529469|gb|EDR92220.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|170126610|gb|EDS95495.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|170666993|gb|EDT17756.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|190560322|gb|EDV14301.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227006073|gb|ACP15816.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|229268894|gb|ACQ50531.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] Length = 567 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ + +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF + E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|226945987|ref|YP_002801060.1| guanylyl cyclase [Azotobacter vinelandii DJ] gi|226720914|gb|ACO80085.1| guanylyl cyclase [Azotobacter vinelandii DJ] Length = 415 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 10/161 (6%) Query: 107 DCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N AF S + +++ D+D+FK++ND GH +GD + Sbjct: 258 DPLTDIGNRRAFTSGGEVLLARCAAEGRPAALLLCDLDHFKRLNDTHGHAMGDAALVAFG 317 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + GR+GGEEFA G+ + +A +R+ S++++ G + ++ Sbjct: 318 RLLALGVRQQDICGRIGGEEFACLLPGADRTVSLQVAERIRQAC--SELSLEPGVRVSVS 375 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I +E+ + +S ++ +DQALY AK +GR+RV C +D Sbjct: 376 IGVASSEQAGYD-LSRLLALSDQALYRAKANGRDRVECSAD 415 >gi|254503388|ref|ZP_05115539.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222439459|gb|EEE46138.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 273 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 14/155 (9%) Query: 112 LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 L NH + + LS+ DID+FK +ND +GH GD+ + ++ L Sbjct: 109 LCNHE--LKARSRTEAPLSVALLDIDHFKSVNDTYGHAAGDEALRVVARTLENSLRQSDV 166 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIHITISAGIAERCHK 230 V R GGEEF+ ++ + A+ LA+ LRK + S+I I G S +T S G+A Sbjct: 167 VCRWGGEEFSLLMPRTNSENASGLADRLRKTL--SEIVIKEGGTSFSLTASFGVATMAGP 224 Query: 231 EP---------ISTIIYRADQALYVAKKSGRNRVV 256 P I + AD ALY AK +GRN+V+ Sbjct: 225 NPACKATGADAIDLLFKDADDALYKAKDAGRNKVI 259 >gi|254502336|ref|ZP_05114487.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia alexandrii DFL-11] gi|222438407|gb|EEE45086.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia alexandrii DFL-11] Length = 852 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 15/210 (7%) Query: 66 VENLSLVIISITISLLLGYISG--SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG 123 VEN LVI+ I + L+ + +EL + I+ ++ D L+GL N +L Sbjct: 378 VENGDLVILRIDTTELVRHRRALERNSEELKKANAEITHMALHDDLTGLGNRRYLAKTLE 437 Query: 124 SYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 + E+ ++ + D+D FKQIND GH GD V+ ++++ +V V R+G Sbjct: 438 EFTERRQATGGEIAALHIDLDRFKQINDTMGHRAGDDVLVEAANRIRLVLEPAEAVARIG 497 Query: 177 GEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 G+EF L S A LAN L K + S+ + + S GIAE E + Sbjct: 498 GDEFVVLVPLSDSSDRPADLANTLLKDL--SRPVRTHDKECRVGASIGIAETPLSE-VEN 554 Query: 236 IIYRADQALYVAKKSGRNRVVCF--SDIEN 263 ++ +D ALY AK GR R+ + SD+E+ Sbjct: 555 LLTNSDVALYKAKHRGRGRIEVYDCSDLED 584 >gi|170747430|ref|YP_001753690.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831] gi|170653952|gb|ACB23007.1| diguanylate cyclase [Methylobacterium radiotolerans JCM 2831] Length = 352 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 9/157 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F +L + E +S++ DID+FK+ ND +GH GD+V+ ++ Sbjct: 183 DALTGLANRKHFEETLKASMETARARTTPMSLIILDIDFFKRFNDLYGHLTGDQVLRLVA 242 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGPSI-H 217 + G + R GGEEF G A +A +R + + + S+G S+ Sbjct: 243 IVMRENAGKQAQLARFGGEEFGIILPGVDRAVAKQVAETVRTSVMGRELVKRSTGESLGK 302 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 ITIS G+A + ++++ RAD ++ AK++GRNR Sbjct: 303 ITISLGVAVLRPGDTPASLMERADLCMFAAKRAGRNR 339 >gi|161620679|ref|YP_001594565.1| diguanylate cyclase [Brucella canis ATCC 23365] gi|254702991|ref|ZP_05164819.1| GGDEF domain-containing protein [Brucella suis bv. 3 str. 686] gi|256157691|ref|ZP_05455609.1| GGDEF domain-containing protein [Brucella ceti M490/95/1] gi|256253337|ref|ZP_05458873.1| GGDEF domain-containing protein [Brucella ceti B1/94] gi|161337490|gb|ABX63794.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365] Length = 237 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 23/229 (10%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97 IAT+I I+ G+ G++ V L +++ I++ LG S L+EL SY Sbjct: 18 IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYR 73 Query: 98 ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148 N +++++ +D L+GLLN +FI + N+ +F D+DY KQIND +GH Sbjct: 74 TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 133 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204 P GD I ++ L + + R+GG+EF A G+ ++L++ LR ++ Sbjct: 134 PAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 193 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + N+ S +T+S G + ++ AD+ LY KKS R Sbjct: 194 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 237 >gi|86749282|ref|YP_485778.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] gi|86572310|gb|ABD06867.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] Length = 818 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 17/165 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 +I+ ++ D L+ L N + + L E +++++ D+D FK +ND+FGHP+G Sbjct: 384 KIAHMAHHDGLTNLPNRALYQERLQQALEQARGGGGRVAVLCIDLDLFKNVNDSFGHPMG 443 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKII----ENS 206 D+++ ++D+L G V RLGG+EFA A +S EA+ +A L +++ + Sbjct: 444 DRLLRCVADRLRAQIGGNDLVARLGGDEFAVVLASVASPNEASDVAARLIELVSAPYDMD 503 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + + G SI I ++ G + C ++ AD ALY AK +G Sbjct: 504 GLEVVIGASIGIALAPGDGDDC-----DVLMRSADMALYRAKAAG 543 >gi|226225788|ref|YP_002759894.1| putative signaling protein [Gemmatimonas aurantiaca T-27] gi|226088979|dbj|BAH37424.1| putative signaling protein [Gemmatimonas aurantiaca T-27] Length = 966 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 10/160 (6%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N S F+ +G + ++++F D+D FK +ND+ GH GD+++ + Sbjct: 525 DPLTDLANRSLFLYQVGHALARGARQHSPVTVLFLDLDNFKTVNDSLGHAAGDRLLVDAA 584 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAAL-GSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +L + + RLGG+EFA S +E ++A+ + + S+ + SG + + Sbjct: 585 RRLASCVRSSDLIARLGGDEFAVLVEDAQSVEEVLVVASRIGTAL--SRPFMLSGKEVFV 642 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + S GIA E ++ AD A+YVAK G+ + V F Sbjct: 643 SASVGIARSSRGESSDELVRNADVAMYVAKTRGKGQHVLF 682 >gi|196047149|ref|ZP_03114366.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] gi|196022019|gb|EDX60709.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] Length = 567 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ + +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKNEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF + E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHKQDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|86147939|ref|ZP_01066243.1| putative GGDEF family protein [Vibrio sp. MED222] gi|85834264|gb|EAQ52418.1| putative GGDEF family protein [Vibrio sp. MED222] Length = 488 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 10/162 (6%) Query: 101 SQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 +L+ D ++GLLN AF S+ +++ ++ FDID FK IND FGH GD VI + Sbjct: 330 KELAAKDPMTGLLNRRGLEAFWRSV-EHDQLFALTVFDIDNFKLINDTFGHDKGDDVIRY 388 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +S Q+ + R GGEEF G + ++ + + NI Sbjct: 389 MSRQISNSIRSSDVAARFGGEEFVVYLKGDDRETLMRTLERVKNAVCANSANIVPNG--- 445 Query: 218 ITISAG--IAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 T+S G I E H I AD+ LYVAK +G++R+V Sbjct: 446 FTVSGGVCITEAEHNNLSFEEIFKHADEKLYVAKTTGKDRIV 487 >gi|116054017|ref|YP_788459.1| sensory box GGDEF domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115589238|gb|ABJ15253.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 323 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ N F S ++ E L+ + D+D FK+IND FGH VGD Sbjct: 158 LQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDFKKINDRFGHQVGD 217 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ GR+GGEEFA G EQ A + L++ ++ ++ Sbjct: 218 QVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERLQREVQ--RLRFQE 275 Query: 213 GP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G S IT+S G+ + E + + RAD A+Y AK+ G++ +V Sbjct: 276 GEQSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIV 321 >gi|197248127|ref|YP_002146327.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211830|gb|ACH49227.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 663 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A + + E A+ + Sbjct: 279 KINDTYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIILAAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|107099271|ref|ZP_01363189.1| hypothetical protein PaerPA_01000283 [Pseudomonas aeruginosa PACS2] gi|296386781|ref|ZP_06876280.1| putative sensory box/GGDEF domain protein [Pseudomonas aeruginosa PAb1] gi|313112100|ref|ZP_07797883.1| putative sensory box/GGDEF domain-containing protein [Pseudomonas aeruginosa 39016] gi|310884385|gb|EFQ42979.1| putative sensory box/GGDEF domain-containing protein [Pseudomonas aeruginosa 39016] Length = 323 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ N F S ++ E L+ + D+D FK+IND FGH VGD Sbjct: 158 LQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDFKKINDRFGHQVGD 217 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ GR+GGEEFA G EQ A + L++ ++ ++ Sbjct: 218 QVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERLQREVQ--RLRFQE 275 Query: 213 GP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G S IT+S G+ + E + + RAD A+Y AK+ G++ +V Sbjct: 276 GEQSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIV 321 >gi|21109198|gb|AAM37742.1| response regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 339 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 16/200 (8%) Query: 71 LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125 +V+ ++ +LLLG ++ L+ + + ++S + +D L+G+ N AF L Sbjct: 139 IVVAALGCTLLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQ 197 Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179 LS++ D+D+FK ND +GH GD + ++ + + R GGEE Sbjct: 198 DAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEE 257 Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235 F + A LA+ +R + E +++SS S H+T+S G A + P+S Sbjct: 258 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNA 317 Query: 236 IIYRADQALYVAKKSGRNRV 255 I++ AD ALY AK+ GRNR Sbjct: 318 IVHDADSALYRAKQKGRNRT 337 >gi|23500362|ref|NP_699802.1| GGDEF domain-containing protein [Brucella suis 1330] gi|225629108|ref|ZP_03787141.1| GGDEF domain protein [Brucella ceti str. Cudo] gi|254695669|ref|ZP_05157497.1| GGDEF domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|256015395|ref|YP_003105404.1| GGDEF domain protein [Brucella microti CCM 4915] gi|260568096|ref|ZP_05838565.1| diguanylate cyclase [Brucella suis bv. 4 str. 40] gi|261216070|ref|ZP_05930351.1| diguanylate cyclase [Brucella abortus bv. 3 str. Tulya] gi|261217233|ref|ZP_05931514.1| diguanylate cyclase [Brucella ceti M13/05/1] gi|261220453|ref|ZP_05934734.1| diguanylate cyclase [Brucella ceti B1/94] gi|261313317|ref|ZP_05952514.1| diguanylate cyclase [Brucella pinnipedialis M163/99/10] gi|261318706|ref|ZP_05957903.1| diguanylate cyclase [Brucella pinnipedialis B2/94] gi|261320104|ref|ZP_05959301.1| diguanylate cyclase [Brucella ceti M644/93/1] gi|261323140|ref|ZP_05962337.1| diguanylate cyclase [Brucella neotomae 5K33] gi|261753600|ref|ZP_05997309.1| diguanylate cyclase [Brucella suis bv. 3 str. 686] gi|261756823|ref|ZP_06000532.1| diguanylate cyclase [Brucella sp. F5/99] gi|265986504|ref|ZP_06099061.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1] gi|265996196|ref|ZP_06108753.1| diguanylate cyclase [Brucella ceti M490/95/1] gi|23463979|gb|AAN33807.1| GGDEF domain protein [Brucella suis 1330] gi|225615604|gb|EEH12653.1| GGDEF domain protein [Brucella ceti str. Cudo] gi|255998055|gb|ACU49742.1| GGDEF domain protein [Brucella microti CCM 4915] gi|260154761|gb|EEW89842.1| diguanylate cyclase [Brucella suis bv. 4 str. 40] gi|260917677|gb|EEX84538.1| diguanylate cyclase [Brucella abortus bv. 3 str. Tulya] gi|260919037|gb|EEX85690.1| diguanylate cyclase [Brucella ceti B1/94] gi|260922322|gb|EEX88890.1| diguanylate cyclase [Brucella ceti M13/05/1] gi|261292794|gb|EEX96290.1| diguanylate cyclase [Brucella ceti M644/93/1] gi|261297929|gb|EEY01426.1| diguanylate cyclase [Brucella pinnipedialis B2/94] gi|261299120|gb|EEY02617.1| diguanylate cyclase [Brucella neotomae 5K33] gi|261302343|gb|EEY05840.1| diguanylate cyclase [Brucella pinnipedialis M163/99/10] gi|261736807|gb|EEY24803.1| diguanylate cyclase [Brucella sp. F5/99] gi|261743353|gb|EEY31279.1| diguanylate cyclase [Brucella suis bv. 3 str. 686] gi|262550493|gb|EEZ06654.1| diguanylate cyclase [Brucella ceti M490/95/1] gi|264658701|gb|EEZ28962.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1] Length = 240 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 23/229 (10%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97 IAT+I I+ G+ G++ V L +++ I++ LG S L+EL SY Sbjct: 21 IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYR 76 Query: 98 ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148 N +++++ +D L+GLLN +FI + N+ +F D+DY KQIND +GH Sbjct: 77 TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 136 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204 P GD I ++ L + + R+GG+EF A G+ ++L++ LR ++ Sbjct: 137 PAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 196 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + N+ S +T+S G + ++ AD+ LY KKS R Sbjct: 197 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 240 >gi|146292899|ref|YP_001183323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella putrefaciens CN-32] gi|145564589|gb|ABP75524.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella putrefaciens CN-32] Length = 749 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 13/164 (7%) Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +A + + S + D+D FKQ+ND +GH GD ++ + Sbjct: 318 DSLTGLANRNALFRQIQTLITSDCLTPGFSFMLMDLDNFKQVNDTYGHDKGDMLLLQVVG 377 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIHI 218 Q+ + + RLGG+EFA G Q+A L+ KII+N + +S ++ Sbjct: 378 QIKTCLDSSIMFARLGGDEFALLLPGVVTQKA--LSQLAEKIIKNVYRRYELSKDKGVYS 435 Query: 219 TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 ++S GIA R ++ ++ ++ ADQA+Y++K +GRNR F++ Sbjct: 436 SVSIGIA-RFPEDALNLEQLLNCADQAMYISKANGRNRYHFFTE 478 >gi|308185409|ref|YP_003929541.1| cellulose synthesis regulatory protein [Pantoea vagans C9-1] gi|308055689|gb|ADO07859.1| Cellulose synthesis regulatory protein [Pantoea vagans C9-1] Length = 523 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 18/184 (9%) Query: 90 LKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGS--YNEKLS-----IVFFDIDYFKQ 141 L++ + NR + ++ D L+G+ N F L N +LS ++ FDIDYFK+ Sbjct: 334 LRDELTAANRSLENQAQSDGLTGVANRRHFDHMLTESLLNAELSGLPVSLILFDIDYFKR 393 Query: 142 INDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ND +GH GD + ++ L R GGEEFA A LA + Sbjct: 394 YNDTYGHVAGDDCLKKVATVLKHAARRKNELTARYGGEEFAIILSEQPLSTAVDLAESII 453 Query: 201 KIIENSQIN--ISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRN 253 + I + P H+T+SAG A + H + +I RAD+ALY AK++GRN Sbjct: 454 AAVNRLAIPHMTTELPQKHVTLSAGCAMYFATDLQHGK--QGLIKRADEALYRAKRAGRN 511 Query: 254 RVVC 257 RV+C Sbjct: 512 RVMC 515 >gi|227112832|ref|ZP_03826488.1| putative regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 515 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 14/182 (7%) Query: 88 SILKELFISYNRISQ-LSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYF 139 +I+++ S N Q L+ D L+GL N F +L EK ++++ FD+D F Sbjct: 330 TIVRDELTSVNHTLQTLALFDGLTGLANRRQFDIFLQQTLLQAAEKRQCIALIMFDVDAF 389 Query: 140 KQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 K+ ND++GH GD+ + + + L ++ V R GGEEFA + +Q AA LA Sbjct: 390 KKYNDHYGHVAGDECLRKIGNLLSNMLRRNEDLVARYGGEEFAIIITETDKQSAAALAQR 449 Query: 199 LRKIIENSQINISSG--PSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRN 253 ++ +I + +TISAG+ C P S++I AD ALY AK G+N Sbjct: 450 ALDLVREEKIPHETTLFSEKIVTISAGVYVFCADNPPPAASSVIDIADAALYRAKNGGKN 509 Query: 254 RV 255 R+ Sbjct: 510 RI 511 >gi|304392630|ref|ZP_07374570.1| putative kinase/esterase protein [Ahrensia sp. R2A130] gi|303295260|gb|EFL89620.1| putative kinase/esterase protein [Ahrensia sp. R2A130] Length = 487 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 98/205 (47%), Gaps = 29/205 (14%) Query: 73 IISITISLLLGYIS---GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------G 123 +I + +S LG++S + L S + L+ D L+GL N F SL G Sbjct: 274 VILLIVSSALGFLSYRHSKTISALQRSEDENRFLALHDALTGLPNRLQFDRSLEGVISSG 333 Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + +I+ D+D FK +ND FGH GD V+A +++++ V G RLGG+EF Sbjct: 334 GIG-RCAILCIDLDRFKAVNDTFGHQAGDAVLAEVANRITQVVGDTGMAARLGGDEF-MV 391 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISS--------GPSIHITISAGIAERCHKEPIS- 234 L +A+ ++E SQ I S G S I S G+A + Sbjct: 392 LLHDGADDAS--------VVETSQTIIDSVSREIMFPGGSAFIGASIGVAHWPDDTSTAK 443 Query: 235 TIIYRADQALYVAKKSGRNRVVCFS 259 +II AD+ALY AK+SGR R VC S Sbjct: 444 SIIRSADEALYQAKESGRGR-VCLS 467 >gi|148656956|ref|YP_001277161.1| diguanylate cyclase [Roseiflexus sp. RS-1] gi|148569066|gb|ABQ91211.1| diguanylate cyclase with GAF sensor [Roseiflexus sp. RS-1] Length = 785 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 11/171 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L G+ N F S+ E+ LS++ D+D FKQIND +GHP+GD Sbjct: 584 VQHLAITDPLMGIYNRRYFFSAATREYERARRHHHALSVLIADLDNFKQINDRYGHPIGD 643 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ +S + + R GGEE + + LR + S I Sbjct: 644 QVLQAVSSIFRRELRSIDLLARYGGEEIVVLLPETDCSGVVRVVERLRSRL-MSAIPTER 702 Query: 213 GPSIHITIS--AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 G +HIT S A +++R + T+I ADQ+L AK+ G++R+V + D+ Sbjct: 703 G-DVHITASFGAAVSQRIRTPDVETLIACADQSLLYAKQQGKDRLVIWCDM 752 >gi|71909200|ref|YP_286787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71848821|gb|AAZ48317.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 827 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 13/178 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 +R+ +++ D L+GL N A + L + ++++F D+D FK IND GH V Sbjct: 392 DRMRHIAQHDALTGLPNRLALLMRLAQLLPEARRHGWTVAVMFIDLDRFKIINDTLGHQV 451 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209 GD+++ ++ +L + FV RLGG+EF SS +AAI++ KII Sbjct: 452 GDEMLREVACRLSNLLRETDFVARLGGDEFVIILPSISSPADAAIVSG---KIISALSTA 508 Query: 210 I-SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIENNT 265 I + G +H + S GI+ P I+ + AD A+Y AK +GRN F+ N T Sbjct: 509 IEAEGHELHTSPSIGISIFPDDGPDGDIVLKNADTAMYHAKAAGRNNYQFFAADMNRT 566 >gi|329297647|ref|ZP_08254983.1| RNase II stability modulator [Plautia stali symbiont] Length = 269 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 17/184 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140 SG+ + E + R+ ++ D ++GL N +A + + + +V+ D+D FK Sbjct: 69 SGTDITEERRAQERLRVMANTDTVTGLPNRNAIHQQISLALELANGSQTGVVYLDLDNFK 128 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN--- 197 ++ND +GH GD+++ +S ++ G + RLGG+EF A +S+ +A+ Sbjct: 129 KVNDAYGHMFGDQLLQAVSLAILSCLGKNQTLARLGGDEFVVLAEHTSQAALEAMASASR 188 Query: 198 ---DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 LR+ I + SG SI I ++ H E ++I AD A+Y AK++GR + Sbjct: 189 ILERLRQPFRIGLIEVYSGCSIGIALAP-----LHGEDRESLIRNADTAMYHAKENGRGK 243 Query: 255 VVCF 258 CF Sbjct: 244 -FCF 246 >gi|320324118|gb|EFW80199.1| hypothetical protein PsgB076_13667 [Pseudomonas syringae pv. glycinea str. B076] Length = 352 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 10/161 (6%) Query: 104 SRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 SR D L+GLLN A+ ++L G ++ DID+FK +ND +GH GD+VI Sbjct: 190 SRRDSLTGLLNQGAWRAALEEEYALGKREVGSATLALIDIDHFKAVNDVYGHLTGDQVIK 249 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L V + GR+GG+EF GS E +A L L++ + + P + Sbjct: 250 LFGTVLGAVKRSTDIAGRIGGDEFGLILRGSDEVQATKLLCRLQQQLARTFTTEPELPVV 309 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++I G+A + + D+ALY AK+ GRN++V Sbjct: 310 SLSI--GVATFGLEYGGVEGWLRSCDRALYEAKRQGRNQIV 348 >gi|152984841|ref|YP_001345776.1| hypothetical protein PSPA7_0381 [Pseudomonas aeruginosa PA7] gi|150959999|gb|ABR82024.1| hypothetical protein PSPA7_0381 [Pseudomonas aeruginosa PA7] Length = 323 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ N F S ++ E L+ + D+D FK+IND FGH VGD Sbjct: 158 LQRLATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDFKKINDRFGHQVGD 217 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ GR+GGEEFA G EQ A + L++ ++ ++ Sbjct: 218 QVLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERLQREVQ--RLRFQE 275 Query: 213 GP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G S IT+S G+ + E + + RAD A+Y AK+ G++ +V Sbjct: 276 GEHSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIV 321 >gi|78062390|ref|YP_372298.1| diguanylate cyclase [Burkholderia sp. 383] gi|77970275|gb|ABB11654.1| diguanylate cyclase (GGDEF domain) [Burkholderia sp. 383] Length = 516 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 I L+R D L+GL N + L + + L++++ D+D FK IND FGH G Sbjct: 338 IRHLARHDALTGLPNRHELHAQLKRMLARRPRAPDAALAVMYLDLDGFKAINDRFGHQAG 397 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++ +L R+GG+EF A ++ ++LA + + I ++ +S Sbjct: 398 DDVLTQVAVRLGKTLSPGELAARIGGDEFVVAIDDTTMHACSLLAARIIRQI-SAPYTLS 456 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 G ++++ IS GIA + H P +I +AD ALY AK +G+ Sbjct: 457 IGETVNLGISIGIALDDGHGSP-DELIRQADSALYDAKSAGKG 498 >gi|228906375|ref|ZP_04070259.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] gi|228853287|gb|EEM98060.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] Length = 569 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 6/172 (3%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149 L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND GH Sbjct: 137 LRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGHM 196 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD +++ ++ +L V G + RLGG+EF + + + LA + + Sbjct: 197 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 254 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 255 ILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|239813726|ref|YP_002942636.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110] gi|239800303|gb|ACS17370.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110] Length = 801 Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 12/180 (6%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136 YI + + EL ++ L+R D L+GL N +F ++ + ++F DI Sbjct: 601 YILSNDVTELKQKQMKLDALAREDALTGLPNRRSFEEHARDAMARSRRAGLPVCLLFLDI 660 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-EQEAAIL 195 DYFK IND+ GH GD V+ +L R G+EF G+S EA ++ Sbjct: 661 DYFKTINDSLGHAAGDAVLREFGRRLRESVRETDMAARYAGDEFVILLEGASGAAEAQVV 720 Query: 196 ANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 A K++ + G ++ T S G+A E +++ RAD ALY AKK G+NR Sbjct: 721 AG---KVLAAMRPAFHLPGRTLQATTSIGVAVSEDDEDFASLFVRADTALYAAKKEGKNR 777 >gi|221067494|ref|ZP_03543599.1| diguanylate cyclase [Comamonas testosteroni KF-1] gi|220712517|gb|EED67885.1| diguanylate cyclase [Comamonas testosteroni KF-1] Length = 632 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 7/170 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 + L+ D L+GL N A +L + +++ F D+D FKQ+ND GH GD+V+ Sbjct: 463 NHLANHDALTGLANRRALEETLNQELADGQMVAVCFMDLDGFKQVNDTQGHDAGDEVLRV 522 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPS 215 ++ +L+ +V RLGG+EF G + A+ + +++ +E I + G Sbjct: 523 VAARLLAQARAGDYVARLGGDEFVVLLSGLHMPKEAM--SVMKRCMEAVRQPIALQGGVM 580 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + + S GI+ + ++ AD+A+Y AK +G+ R+V SD+ ++ Sbjct: 581 VQVGSSIGISISMEGSSTANLLQTADEAMYAAKHAGKGRIVQHSDLAQSS 630 >gi|188577258|ref|YP_001914187.1| Putative signal protein with CHASE3 and GGDEF domains [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521710|gb|ACD59655.1| Putative signal protein with CHASE3 and GGDEF domains [Xanthomonas oryzae pv. oryzae PXO99A] Length = 563 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL LS++ D+D+FKQ ND+ GH GD ++A + Sbjct: 396 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 455 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L+ T R GGEEF + +EA +A +R I ++ + +T Sbjct: 456 ELLLTRLRTEDVACRYGGEEFTVLLPEADGEEALRVAEQIRGYIAALAVSDEARALPKVT 515 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E +++I +AD ALY AK GRNRV Sbjct: 516 ASIGVASFPADGEQGASLIQKADAALYRAKHRGRNRV 552 >gi|56752006|ref|YP_172707.1| hypothetical protein syc1997_c [Synechococcus elongatus PCC 6301] gi|56686965|dbj|BAD80187.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 664 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 82/182 (45%), Gaps = 14/182 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 +L + ++ +L++ D L+GL N F L L ++ DID FKQ ND Sbjct: 479 QLAAANQQLLRLAQSDGLTGLANRRHFDQCLDIEWQRAIREQHPLGLILIDIDCFKQFND 538 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD + ++ L V P V R GGEEF ++EQ +A +R + Sbjct: 539 TYGHQAGDDCLKAVATALTQVIARPADLVARYGGEEFVVILPNTNEQGILQIAESMRSAV 598 Query: 204 ENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +I S + A HK P +I ADQALY AK+ GRNR VC Sbjct: 599 QQLKIPHRSSSVCSSVSLSLGAVTWVPTPHKSP-EALIGAADQALYQAKELGRNR-VCLG 656 Query: 260 DI 261 + Sbjct: 657 GV 658 >gi|17546612|ref|NP_520014.1| hypothetical protein RSc1893 [Ralstonia solanacearum GMI1000] gi|17428911|emb|CAD15595.1| putative signal transduction ggdef domain transmembrane protein [Ralstonia solanacearum GMI1000] Length = 533 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 18/189 (9%) Query: 84 YISGSILKELFISYNRIS--QLSRI------DCLSGLLNHSAFISSL---GSYNEKLSIV 132 YI LK + R++ +++R+ D L+GL N ++L ++ S V Sbjct: 328 YIEAHRLKRALLRGTRLTSTRMARLNLEALTDPLTGLYNRRGVANALRLHAGRHQPFSAV 387 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D+FK+IND GH VGD+V+ L+ + GR+GGEEF ++ A Sbjct: 388 TLDVDHFKRINDRHGHDVGDQVLRHLAALIREQARHGDITGRIGGEEFILLLPDATPDGA 447 Query: 193 AILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRADQALYVAKKS 250 A LR +E P+ +T+S G+A + ++ +D ALY AK+ Sbjct: 448 FRTAERLRLAVE-----ARPNPAGQVVTVSLGVAHYPQSAGEVDAVLKLSDLALYQAKRD 502 Query: 251 GRNRVVCFS 259 GRNR V + Sbjct: 503 GRNRTVVYQ 511 >gi|320334267|ref|YP_004170978.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM 21211] gi|319755556|gb|ADV67313.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM 21211] Length = 802 Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 96/177 (54%), Gaps = 11/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL S R++ ++ D L+GL N + F I+S +L+++F D+D FK +ND Sbjct: 371 ELEASQARLAHQAQHDVLTGLPNRALFQDRVERGIASAAREGGRLAVMFIDLDGFKAVND 430 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203 GH GD+++ ++ +L V RLGG+EF LG ++ Q+AA +A + + + Sbjct: 431 TLGHAAGDELLREVASRLQDNVRRNDTVARLGGDEFTVMLLGVNTAQDAASVAQKILRAL 490 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 I+++ G + H++ S G++ +T + R AD A+Y AK+ G+N + ++ Sbjct: 491 REP-IHLADGAA-HVSGSIGVSLYPQDGADATDLQRHADIAMYRAKQGGKNNITFYA 545 >gi|296388151|ref|ZP_06877626.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] Length = 201 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 22/178 (12%) Query: 100 ISQLSRI----DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148 IS+L R+ D L+GL N +F L + L+++ D+D+FK ND +GH Sbjct: 26 ISRLLRVMADHDSLTGLHNRRSFNQHLDRLWRQAQREQKTLALLLCDVDHFKAYNDRYGH 85 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD V+ + P+ + RLGGEEFA G++E EA + A LR ++ + Sbjct: 86 QAGDAVLQRIGAVFEANARRPLDMAVRLGGEEFALLLYGANEHEARLRAEALRAQVQALR 145 Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYR-------ADQALYVAKKSGRNRVVC 257 + + +S + +T+S G++ C + R AD+ALY AK GRN+VV Sbjct: 146 MEHEASDTAREVTLSVGVS--CLWPTPGNDLKRLYDLYEHADRALYEAKAFGRNQVVA 201 >gi|307152731|ref|YP_003888115.1| diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306982959|gb|ADN14840.1| diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 447 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKL--SIVFFDIDYFKQIN 143 ++L + ++ +L+ D L+ L N F L S EK+ S++ D+D+FK N Sbjct: 269 RDLEKAKQKLEKLATTDQLTQLANRRKFDQYLQYEWRRSIREKIPISLILCDVDHFKLYN 328 Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GDK + ++ + +V + V R GGEEFA ++ + A +A D+R Sbjct: 329 DCYGHLAGDKCLKRVAKVMETIVKRSADLVARYGGEEFAIVLSNTNLEGAQKVAEDIRLA 388 Query: 203 IENSQI-NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRN 253 + +I + SG + ++T+S GI+ + T+I AD+ALY AK+ GRN Sbjct: 389 VAKRKIPHGVSGANPYVTVSLGISTTIPSLESSSKTLINTADKALYQAKERGRN 442 >gi|254253798|ref|ZP_04947115.1| Response regulator [Burkholderia dolosa AUO158] gi|124898443|gb|EAY70286.1| Response regulator [Burkholderia dolosa AUO158] Length = 363 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFKQIN 143 ++L + + +L+ D L+GL N L GS +L+++ D+D FKQ N Sbjct: 170 QQLLEANLELRRLTHSDGLTGLSNRRYLDEYLAAEWRRGSRERGELALLMIDVDNFKQYN 229 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD ++ ++ L G + R GGEEFA SS A +LA +R Sbjct: 230 DTYGHVAGDGLLRQIAATLERCVGRSGALAARFGGEEFAVVMPASSASAARLLAEKIRLA 289 Query: 203 IENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E ++ + + P ++T+S G A P + +I AD+ALY AK G+NRV Sbjct: 290 VEALRLEHAHASPGRYVTVSIGGASIVPTPDVPPTALIEAADRALYRAKHEGKNRV 345 >gi|323137100|ref|ZP_08072180.1| diguanylate cyclase [Methylocystis sp. ATCC 49242] gi|322397861|gb|EFY00383.1| diguanylate cyclase [Methylocystis sp. ATCC 49242] Length = 343 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 87/187 (46%), Gaps = 24/187 (12%) Query: 89 ILKELFISYNRISQLSRIDC--LSGLLNHSAF---ISSLGSYNEKLS------------- 130 I+ L I N + L DC L+GL N F S + SY++ + Sbjct: 136 IVGMLRIYSNHLGVLDYGDCDELTGLFNRRTFHDYFSQIASYSDAVPPRVDERVPTRERF 195 Query: 131 --IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 + DID+FK+IND+FGHP GD+V+ + + F + R GGEEF ++ Sbjct: 196 PHLAVIDIDFFKRINDDFGHPFGDEVLVLFARLMRECFNDLDRLFRFGGEEFLVILNNAT 255 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 + EA + R +E + GP +T S G + S+ RAD ALYVAK Sbjct: 256 KLEAQAALENFRATVEGFRFP-QVGP---VTASIGYTTVLPGDTGSSAFGRADAALYVAK 311 Query: 249 KSGRNRV 255 + GRN+V Sbjct: 312 QRGRNQV 318 >gi|200391114|ref|ZP_03217725.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603559|gb|EDZ02105.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 663 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|110803561|ref|YP_698113.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens SM101] gi|110684062|gb|ABG87432.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens SM101] Length = 624 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 20/170 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 KE+ I +R++ D L+ + N F S G+ +K +++F D+D+FK+IN Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFGNTINESKKKGKKFAVLFIDLDWFKEIN 238 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198 DNFGH VGD+V+ ++ +GR+GG+EFAA S++E + N Sbjct: 239 DNFGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDKEEIEKIVKDIQNY 298 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 LRK I+ + + SI ITI E+ I ++ +D+A+Y K Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343 >gi|82702732|ref|YP_412298.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis ATCC 25196] gi|82410797|gb|ABB74906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosospira multiformis ATCC 25196] Length = 688 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 33/211 (15%) Query: 74 ISITISLL---LGYISGSI-----LKELFISYNRISQLSRIDCLSGLLNHSAF------- 118 +S+TIS + G+I G+ + + S RI L+ D L+GL N + F Sbjct: 222 VSVTISPVKDNAGHIVGAYKIAHDITQRKESLKRIEYLAHYDLLTGLPNRALFTDRMRIA 281 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 I + Y +L+++F D+D FK IND+ GH +GDK++ +++++ V RLGG+ Sbjct: 282 IENASRYAFRLALLFVDLDRFKLINDSLGHAIGDKLLRAVAERMQSTVRQADTVSRLGGD 341 Query: 179 EF---------AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 EF A A +E+ A+L+ + IE ++ +++ I I +G Sbjct: 342 EFVVLLGRIHTATEAARVAEKLIAVLSQPYQ--IEQHELLLTASVGISIYPDSG------ 393 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +++++ AD ++Y AK GRNR +S+ Sbjct: 394 -KDVNSLMRNADVSMYSAKGQGRNRYQFYSE 423 >gi|27381607|ref|NP_773136.1| hypothetical protein bll6496 [Bradyrhizobium japonicum USDA 110] gi|27354775|dbj|BAC51761.1| bll6496 [Bradyrhizobium japonicum USDA 110] Length = 1137 Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 8/163 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI+ L++ D L+GL N + F L + S++ D+D FK +ND GH G Sbjct: 704 RIAYLAQHDLLTGLANRAVFSEKLDDAAKRSQRHGTTFSVLMLDLDRFKAVNDTLGHAAG 763 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ ++ +L + RLGG+EFA Q +A LR I Q Sbjct: 764 DQLLVEVARRLSSSLRDTDVLARLGGDEFAIIQENEKNQSEGAIALALRIIGLIEQPVDL 823 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 G + + S GIA H T++ +AD ALY K +GRN Sbjct: 824 DGHRVSVGTSVGIAFAPEHGADAETLLQKADVALYATKSAGRN 866 >gi|94314669|ref|YP_587878.1| hypothetical protein Rmet_5750 [Cupriavidus metallidurans CH34] gi|93358521|gb|ABF12609.1| hypothetical protein; GGDEF and EAL domains [Cupriavidus metallidurans CH34] Length = 581 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 106/206 (51%), Gaps = 22/206 (10%) Query: 72 VIISITISLLLGYISGSILKELFISYNR-------ISQLSRIDCLSGLLNHSAF------ 118 ++++ +L G+++G + +E + + IS +++ D L+GL N S Sbjct: 106 LLLATAAVMLAGWLAGRLRRERQEARKQATLADAYISHMAKHDALTGLPNRSELHERCEV 165 Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 ++ ++++ D+D+FK IN+ GHPVGD ++ ++D++ V R+GG Sbjct: 166 LLAEARRRGSGVALLLLDLDHFKHINETLGHPVGDDLLRTIADRIRGAVRPRDVVARMGG 225 Query: 178 EEFAAAALGSS--EQEAAILAND-LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233 +EF A ALG + EA ++A L ++ E+ + +G + +T S G+A + Sbjct: 226 DEF-AVALGDLRFDGEAELVAAKILARVSEDLPL---AGEHVRVTPSLGMAIFPQDGNSL 281 Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259 + ++ AD A+Y AK GR ++ F+ Sbjct: 282 TDLMKSADAAMYAAKHGGRAQLRRFA 307 >gi|23014126|ref|ZP_00053960.1| COG5001: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 679 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 19/182 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +R+ LS D L+ L N F I + + D+D FK IND FGHP+ Sbjct: 260 HRLEDLSIRDPLTRLYNRRKFDEFLDHEIDRSQRHGHPFCVAQIDLDDFKNINDTFGHPI 319 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ L+ L + R+G +EF+ ++ +E A +R+ I + Q+ + Sbjct: 320 GDLVLKELASVLNREVRRTDMLARVGADEFSVLLPETTMEEGIAAAEKMRQAIADCQLGL 379 Query: 211 SSGPSIHITISAGI------AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + IT S G+ A+ K I+ AD A+Y AK+SG+N+V + E+ Sbjct: 380 PVG-GVRITASVGLVGYPENADDAQKLAIA-----ADVAIYKAKRSGKNQVAVIGEGEDA 433 Query: 265 TC 266 T Sbjct: 434 TV 435 >gi|331696700|ref|YP_004332939.1| diguanylate cyclase [Pseudonocardia dioxanivorans CB1190] gi|326951389|gb|AEA25086.1| diguanylate cyclase [Pseudonocardia dioxanivorans CB1190] Length = 435 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 19/176 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ + + D +GLLN +A+ +S S++ D+D+FK +ND GH Sbjct: 232 RQLEEAASTDGKTGLLNAAAWHAHAQREVSRAVRQGGAASLLILDLDHFKSVNDRHGHLA 291 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-----EAAILANDLRKIIEN 205 GDKV++ +++ L VGR GGEEF G + E ++A+ +R+ +E Sbjct: 292 GDKVLSAVAETLRSEVRENDLVGRFGGEEFVVLLPGVDDSDYGVAELRLVADRIRRRVEG 351 Query: 206 SQINISSGPSIHITIS------AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + + P +TI+ G A ++ ++ AD ALY AK+SGRN V Sbjct: 352 MAVEMPT-PDGPLTITGLTVSIGGAAFPTDGSDLTRLLETADSALYAAKRSGRNVV 406 >gi|289627159|ref|ZP_06460113.1| GGDEF [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868210|gb|EGH02919.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 328 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 21/232 (9%) Query: 31 FSIFFSIFIATVIFIANIFL--FYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG- 87 S+FF FI V A I+L + LT G+++ LS V + I+ +LL G ++ Sbjct: 108 MSVFFVKFIDYVAAAALIWLIMWQTDLTAV-GVDH---APLSYVFL-ISSTLLGGSLNAT 162 Query: 88 --SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVF--FDIDYFK 140 S++ + + +R +LS+ D L+ N A ++SL + ++K S+ F D+D FK Sbjct: 163 FLSLVMQTMAASDRYQKLSKTDTLTNAPNRRALVASLDNALTSDDKSSLWFAMLDLDNFK 222 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IN N GH VGD V+ + + G F GRLGGEEF S AA + Sbjct: 223 SINANHGHDVGDNVLICFATLIKNTTGLVNF-GRLGGEEFGVML---SAANAADAIAAMD 278 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 ++ ++Q + ++ + + SAGIA + ++ ++ AD+ LY+AK+SGR Sbjct: 279 HLLMHAQKDQTA--KMPYSFSAGIASLARAKNVNDLLKEADENLYLAKRSGR 328 >gi|296136609|ref|YP_003643851.1| response regulator receiver modulated diguanylate cyclase [Thiomonas intermedia K12] gi|295796731|gb|ADG31521.1| response regulator receiver modulated diguanylate cyclase [Thiomonas intermedia K12] Length = 630 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 22/177 (12%) Query: 102 QLSRIDCLSGLLNH---SAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q + D L+G+ N AF+ L + + L+ + FD+D FK+IND GH VGD+ Sbjct: 461 QAAGTDELTGVGNRRALDAFLPPLFAQAAAEGQPLACLMFDLDEFKRINDRLGHDVGDQA 520 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + L FV R+GGEEF ++E+ A +A +R I Q ++ P Sbjct: 521 LRAVGRVLRQQSRGMDFVARVGGEEFLMLCPQTTEEAAMRVAERIRAAIAVPQADL---P 577 Query: 215 SIHITI-----SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 + +++ +AG A+ +++I ADQAL AK+ GRNR VC + ++ Sbjct: 578 PLSVSVGVALGAAGFAD------AASLIRAADQALLQAKRLGRNR-VCLAPTASSAA 627 >gi|229188834|ref|ZP_04315868.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876] gi|228594647|gb|EEK52432.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876] Length = 569 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF + + LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|226952586|ref|ZP_03823050.1| GGDEF domain-containing protein [Acinetobacter sp. ATCC 27244] gi|226836666|gb|EEH69049.1| GGDEF domain-containing protein [Acinetobacter sp. ATCC 27244] Length = 425 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 10/175 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 K L + + + LS+ D L+ + N F Y + L+++F DIDYFK N Sbjct: 237 KILRLQASELLHLSQHDDLTNVSNRRTFEEMCIYYYDLACQEQKPLAVLFIDIDYFKNYN 296 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GD I+ ++ + F+ R GGEEF + Q A +A ++ + I Sbjct: 297 DFYGHQMGDHAISEIAKTIKGSIRHMDFIARYGGEEFVVLLPETPAQGAYAVATNIYRAI 356 Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 + I + S S H+TIS GI IS +I AD+ALY AK+ GRN++ Sbjct: 357 DRLMIPHAKSLVSNHVTISLGITVFNGNRAISQELLIDTADKALYRAKQLGRNQI 411 >gi|187732577|ref|YP_001880181.1| sensory box-containing diguanylate cyclase [Shigella boydii CDC 3083-94] gi|187429569|gb|ACD08843.1| sensory box-containing diguanylate cyclase [Shigella boydii CDC 3083-94] Length = 430 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D + FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTNRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLIPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|170755524|ref|YP_001780837.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum B1 str. Okra] gi|169120736|gb|ACA44572.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum B1 str. Okra] Length = 419 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 E I ++ Q++ D L+ L N ++F+ L L+I+F D+D FK++ND Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSRKKQNLLAIMFLDLDKFKEVND 303 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203 NFGH GDK++ ++ ++ + + R GG+EF + E++ LA D+ ++ Sbjct: 304 NFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLARDIIEVF 363 Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I I G ++I S GI+ + H +I +AD+A+Y AKK G N+ + D Sbjct: 364 KEP-ICI-EGIYVNIKTSIGISFFPKDGH--TSQELIKKADKAMYDAKKRGSNKFQIYKD 419 >gi|146338937|ref|YP_001203985.1| putative signal peptide [Bradyrhizobium sp. ORS278] gi|146191743|emb|CAL75748.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 636 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 22/181 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPV 150 R+ L+ D L+GL N F L +Y EK L+++ DID+FK ND +GHP Sbjct: 447 GRLETLAIEDGLTGLANRRRFDERLLEEWGRAYREKTSLALLMIDIDHFKAFNDAYGHPA 506 Query: 151 GDK----VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD+ V L+D+ + V R GGEEFA + A L +R+ + + Sbjct: 507 GDECLHTVAGILADE---AQRSSDLVARYGGEEFAILLPNTDAAGCARLGERIRRALHAA 563 Query: 207 QINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + P +T S G A ER +++I AD+ALYVAK GR+R+V + Sbjct: 564 ALVHAHNPPGIVTASLGGAVCRPGLERSAGP--ASLIEAADRALYVAKDGGRDRMVMAGE 621 Query: 261 I 261 + Sbjct: 622 V 622 >gi|15598539|ref|NP_252033.1| hypothetical protein PA3343 [Pseudomonas aeruginosa PAO1] gi|116051358|ref|YP_789809.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218890461|ref|YP_002439325.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254236305|ref|ZP_04929628.1| hypothetical protein PACG_02276 [Pseudomonas aeruginosa C3719] gi|9949475|gb|AAG06731.1|AE004756_9 hypothetical protein PA3343 [Pseudomonas aeruginosa PAO1] gi|115586579|gb|ABJ12594.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126168236|gb|EAZ53747.1| hypothetical protein PACG_02276 [Pseudomonas aeruginosa C3719] gi|218770684|emb|CAW26449.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 389 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 22/178 (12%) Query: 100 ISQLSRI----DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148 IS+L R+ D L+GL N +F L + L+++ D+D+FK ND +GH Sbjct: 214 ISRLLRVMADHDSLTGLHNRRSFNQHLDRLWRQAQREQKTLALLLCDVDHFKAYNDRYGH 273 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD V+ + P+ + RLGGEEFA G++E EA + A LR ++ + Sbjct: 274 QAGDAVLQRIGAVFEANARRPLDMAVRLGGEEFALLLYGANEHEARLRAEALRAQVQALR 333 Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYR-------ADQALYVAKKSGRNRVVC 257 + + +S + +T+S G++ C + R AD+ALY AK GRN+VV Sbjct: 334 MEHEASDTAREVTLSVGVS--CLWPTPGNDLKRLYDLYEHADRALYEAKAFGRNQVVA 389 >gi|330953892|gb|EGH54152.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7] Length = 341 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 18/178 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQIND 144 EL I+ N + ++ D L+ L N F ++L + S I+ DID+FKQ ND Sbjct: 146 ELNIARNELEIIAHTDSLTQLANRRCFDAALQQEGGRASRNTATIAIILLDIDWFKQYND 205 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199 +GH GD + Q+ + G + R GG EF + A +A + Sbjct: 206 TYGHLQGDDCL----KQVAGLIGNSLDRAGDIAARYGGGEFVILLPETDLAGALKIAEKI 261 Query: 200 RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R +E ++I S+ P +TIS+G+ K+ + + AD+ LY+AK GRNRV Sbjct: 262 RSSVETTRIEHSASPLGKLTISSGVVSINAAEKDGHTAALAEADRLLYLAKTKGRNRV 319 >gi|229593072|ref|YP_002875191.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas fluorescens SBW25] gi|229364938|emb|CAY53042.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas fluorescens SBW25] Length = 701 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 14/158 (8%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F ++ + + L +++ D+D FK++ND+ GH GD+V+ ++S Sbjct: 278 DPLTGLLNRRGFYQAVENTLLRSERVEQSLVLLYLDLDGFKRVNDSLGHDAGDRVLRWVS 337 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHI 218 +QL + +GR+GG+EF A ++AA +A K+IE I G + + Sbjct: 338 EQLQGCLRSYDILGRMGGDEFTALLELEFPEQAAKIAE---KLIERVSICQQVEGLDVML 394 Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 +S GIA C + ++ ++ AD A+Y AK++GR + Sbjct: 395 GVSIGIATFPDCGSD-LNGLLRAADIAMYEAKRAGRQQ 431 >gi|188495985|ref|ZP_03003255.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638] gi|188491184|gb|EDU66287.1| diguanylate cyclase (GGDEF) domain protein [Escherichia coli 53638] Length = 476 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 13/160 (8%) Query: 107 DCLSGLLNHSAF-----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ + N + F + S + ++ DID FK++ND +GHPVGD+VI + + Sbjct: 309 DPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDNFKKVNDTWGHPVGDQVIKTVVNI 368 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQINISSGPSI 216 + + R+GGEEF + A LA +R+ +E N + I + Sbjct: 369 IGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGDNPEYAIPQ--KV 426 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I+I A + + P + I AD ALY AK++GRN+VV Sbjct: 427 TISIGAVVTQENALNP-NEISRLADNALYEAKETGRNKVV 465 >gi|167586955|ref|ZP_02379343.1| diguanylate cyclase [Burkholderia ubonensis Bu] Length = 482 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 23/193 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 S L+EL + ++ L+ D L+G N FI + ++ S++ FD+D FK Sbjct: 289 SALQELRRTNQKLEYLAATDPLTGASNRRQFIGLVEREIQRAERDGTPFSLLAFDLDNFK 348 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-----SSEQEAAIL 195 IND +GH +GD+V+ + Q + R GG+EF G E+ A+L Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCIEAVRPGSGTARGGGDEFVVRPAGGIARVGGEEFMALL 408 Query: 196 A----NDLRKIIENSQINISSGP------SIHITISAGIAE-RCHKEPISTIIYRADQAL 244 R E + +I+S P + +T+S G+A+ + ++ D+ L Sbjct: 409 PEMPLEGARMTAERLRSSIASAPFGLDFKRVQVTVSVGVAQYGIDGSTVDALLRAVDERL 468 Query: 245 YVAKKSGRNRVVC 257 Y AK+ GRNRVV Sbjct: 469 YQAKREGRNRVVA 481 >gi|149187425|ref|ZP_01865723.1| hypothetical protein VSAK1_17917 [Vibrio shilonii AK1] gi|148838961|gb|EDL55900.1| hypothetical protein VSAK1_17917 [Vibrio shilonii AK1] Length = 698 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 10/170 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +++ D L+ L N S S L ++E+ + +F D+D+FK IND+ GH G Sbjct: 269 KLRKMAFFDPLTNLPNRSHLTSILEQSIEGGQRHSEQFATLFLDLDHFKHINDSKGHLYG 328 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN-DLRKIIENSQINI 210 D++++ ++D+L V +GR+GG+EF L + EA +L D + N + Sbjct: 329 DRLLSQVADRLTDVLHHRASIGRIGGDEF-VIILTDYDSEAQLLDTIDETLGVFNRPFEL 387 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 S S+ ++ S G+A + T++ AD A+Y+AKK+GRN +S Sbjct: 388 DSQESLRVSGSIGVALYPQDGQNSETLLKNADTAMYLAKKNGRNGYAFYS 437 >gi|149188653|ref|ZP_01866945.1| GGDEF family protein [Vibrio shilonii AK1] gi|148837563|gb|EDL54508.1| GGDEF family protein [Vibrio shilonii AK1] Length = 373 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 11/176 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 KEL +++ QL+ D LSGL N F+ N LS + D+D FK +N Sbjct: 195 KELKALNDKLQQLAVTDELSGLFNRRYFMMMTQEALLRAKVENSYLSFISLDLDNFKHLN 254 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D GH GD+ I S L F F+ R+GG+EF + Q+ +A +R Sbjct: 255 DTLGHARGDEAIIHFSHVLASKFCRKNDFIFRMGGDEFLVVVCCAEHQQVIEIAEQVRSA 314 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVV 256 IE Q I + IT S G+ +E + + RADQ LY AK+ GRN V+ Sbjct: 315 IE-QQCLIDTSSINAITTSIGVFTHIPEEHEDFMYFMERADQLLYKAKEQGRNCVL 369 >gi|254254253|ref|ZP_04947570.1| hypothetical protein BDAG_03548 [Burkholderia dolosa AUO158] gi|124898898|gb|EAY70741.1| hypothetical protein BDAG_03548 [Burkholderia dolosa AUO158] Length = 596 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 10/183 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYF 139 G+ L+ + + + L+R D L+GL N +F L S++F D+D F Sbjct: 411 GAQLRRRIRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRARSVFSLLFVDVDRF 470 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAND 198 K ND +GH GD +A ++ + P+ R GGEEF + + +AA +A Sbjct: 471 KAYNDTYGHQAGDDALAAVARCIGDNIRQPVDTAARYGGEEFVVLLPDTPQTDAARIAER 530 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256 +R I+ + + +T S G+A ++ +I AD+ALY AK +GRN+V Sbjct: 531 IRAAIDELALEHAGSEYGRVTASIGLASWTPEQEGEAGAVIKAADEALYYAKATGRNKVA 590 Query: 257 CFS 259 F Sbjct: 591 AFQ 593 >gi|120603612|ref|YP_968012.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris DP4] gi|120563841|gb|ABM29585.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio vulgaris DP4] Length = 310 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G I SL S ++L +I+F D+D FK IND GH GDK++ ++ Sbjct: 150 DELTGTWTKKRLIKSLTSRIDQLRIFGWNFAILFIDVDKFKSINDTHGHVTGDKILVMIA 209 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHI 218 L+ + R GGEEF +QE ++ LRK++E+ + ++G ++ Sbjct: 210 KTLMSNLRAGDEIYRYGGEEFVIVLPDIKDQEHLFQISEKLRKLVESCFLE-TNGTLLNA 268 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 TIS G + ++I +AD+ +Y AKKSGRN+ Sbjct: 269 TISLGGIIATGNDSAESLISKADKLMYAAKKSGRNK 304 >gi|70732971|ref|YP_262744.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68347270|gb|AAY94876.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5] Length = 430 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 114/254 (44%), Gaps = 33/254 (12%) Query: 31 FSIFFSIFIATVI--FIANIFLFYIGLTPFYGLEYILVENLSL-VIISITISLLLGYISG 87 + +FF+ F+ I + + L L GL ++L + L ++I S ++ I+ Sbjct: 173 YPVFFAAFLLLAIQYWRSPRPLHAAQLVGLLGLFWMLPKTFILPFTLNIMCSQVMLMIAA 232 Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 ++ E + Q++ D L+GL A + + D+D+FK+ ND G Sbjct: 233 AVAHEAY-------QMAFRDELTGLPGRRALNERMQRLGRNYVLAMTDVDHFKKFNDTHG 285 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+V+ ++ +L V R GGEEFA G + E +R+II Sbjct: 286 HDVGDQVLRLVASKLSKV-TGGGRAYRYGGEEFAVVFAGKTMDECMPHLEMIREIIATYN 344 Query: 208 IN-------------------ISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYV 246 I +++ S+ +TIS G+AER H+ P ++ ADQALY Sbjct: 345 IQLRNQDNRPQDDQQGRQRRGVAAASSVSVTISIGVAERLAEHRTP-EEVLKAADQALYS 403 Query: 247 AKKSGRNRVVCFSD 260 AK +GRN V+ F Sbjct: 404 AKGAGRNCVIAFGQ 417 >gi|120599030|ref|YP_963604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sp. W3-18-1] gi|120559123|gb|ABM25050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. W3-18-1] Length = 749 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 13/164 (7%) Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +A + + S + D+D FKQ+ND +GH GD ++ + Sbjct: 318 DSLTGLANRNALFRQIQTLITSDCLTPGFSFMLMDLDNFKQVNDTYGHDKGDMLLLQVVG 377 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIHI 218 Q+ + + RLGG+EFA G Q+A L+ KII+N + +S ++ Sbjct: 378 QIKTCLDSSIMFARLGGDEFALLLPGVVTQKA--LSQLAEKIIKNVYRRYELSKDKGVYS 435 Query: 219 TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 ++S GIA R ++ ++ ++ ADQA+Y++K +GRNR F++ Sbjct: 436 SVSIGIA-RFPEDALNLEQLLNCADQAMYISKANGRNRYHFFTE 478 >gi|322633664|gb|EFY30405.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] Length = 406 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390 Query: 257 CFS 259 FS Sbjct: 391 VFS 393 >gi|320328734|gb|EFW84734.1| hypothetical protein PsgRace4_17948 [Pseudomonas syringae pv. glycinea str. race 4] Length = 359 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 10/161 (6%) Query: 104 SRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 SR D L+GLLN A+ ++L G ++ DID+FK +ND +GH GD+VI Sbjct: 197 SRRDSLTGLLNQGAWRAALEEEYALGKREVGSATLALIDIDHFKAVNDVYGHLTGDQVIK 256 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L V + GR+GG+EF GS E +A L L++ + + P + Sbjct: 257 LFGTVLGAVKRSTDIAGRIGGDEFGLILRGSDEVQATKLLCRLQQQLARTFTTEPELPVV 316 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++I G+A + + D+ALY AK+ GRN++V Sbjct: 317 SLSI--GVATFGLEYGGVEGWLRSCDRALYEAKRQGRNQIV 355 >gi|315127663|ref|YP_004069666.1| two-component response regulator [Pseudoalteromonas sp. SM9913] gi|315016177|gb|ADT69515.1| two-component response regulator [Pseudoalteromonas sp. SM9913] Length = 299 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 10/134 (7%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV--FGTPMFVGRLGGEEFAAAALG 186 L ++ DID+FK+ ND +GH GD+ + ++ L G+ FV R GGEEF A Sbjct: 166 LCVLLIDIDHFKRYNDCYGHRAGDECLKTVAKTLAAQCERGSD-FVARYGGEEFVAVLPE 224 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSI---HITISAGIA--ERCHKEPISTIIYRAD 241 +++Q A AN LR + + +NI S+ H+TIS GIA E ++ AD Sbjct: 225 TNQQGAIAFANKLRNAV--NDLNIEHNASLNATHVTISIGIASSESSQAYTEKALLEEAD 282 Query: 242 QALYVAKKSGRNRV 255 LY AKK GRN++ Sbjct: 283 SGLYNAKKLGRNQI 296 >gi|302035772|ref|YP_003796094.1| putative signal transduction response regulator, receiver and diguanylate cyclase domain (fragment) [Candidatus Nitrospira defluvii] gi|300603836|emb|CBK40168.1| putative Signal transduction response regulator, receiver and diguanylate cyclase domain (fragment) [Candidatus Nitrospira defluvii] Length = 310 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 13/169 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148 + R++ L++ D L+GL+N + F L + L+I+ D+D FK +ND GH Sbjct: 126 AQERLTYLAQHDQLTGLINRALFRDRLIHAMARSKRKDHPLAIMLLDLDRFKAVNDTLGH 185 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207 VGD+++ ++ +L+ V R+GG+EF A G S + ++A ++I+E+ Sbjct: 186 DVGDQLLKVVATRLLECVREVDTVARMGGDEFTAILEGISGVADVLVVA---KRIVESIS 242 Query: 208 INISSGP-SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254 GP I I +S GI E I ++ AD+A+Y AK+ G +R Sbjct: 243 TPFEIGPHRISIGVSIGITLYPLDDEDIDELLRHADKAMYAAKQQGGSR 291 >gi|269966222|ref|ZP_06180311.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829137|gb|EEZ83382.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 405 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 5/158 (3%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +++ D L+GL N N + +I DID+FKQ+ND GH GD V+ +++ Sbjct: 253 KMANQDALTGLWNRRFLFEQPHVENAQRNIAMLDIDFFKQVNDTHGHEGGDAVLVMIANI 312 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L + F + V RLGGEEF A G + L +R+ IE + I +I +T S Sbjct: 313 LKIYFPNDI-VARLGGEEFCIQASGDYDGFLTRLEQ-MRQRIEKTPITYLC-KNILVTAS 369 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G++ + + I AD+ LY+AK++GRN+++ S Sbjct: 370 IGVSNI--EGELEQQIKVADERLYMAKENGRNQIISSS 405 >gi|254000469|ref|YP_003052532.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253987148|gb|ACT52005.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] Length = 782 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 17/231 (7%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS-ITISLLLGYISGSILKELFIS 96 +A +I I+ I+ + T L LS++ ++ + S+LL + E I Sbjct: 276 LMAMLIAISTIYFMMMDTTTPIAKSIALGSCLSIIALAMVRQSILLAESERLLTAEQLIE 335 Query: 97 YN--RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 R L+ D L+GL N F L N ++ ++F DID+FK IND+ G Sbjct: 336 EGQMRYQHLAHHDILTGLPNRLLFQDRLTHALALSARNNNRVGMLFIDIDHFKNINDSLG 395 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIEN 205 H +GD+++ + ++L + RLGG+EF L ++ + A I +N L + Sbjct: 396 HVIGDELLVAIVERLKLRIREQDTFARLGGDEFVLLIEQLQNASEAATIASNLLEAL--K 453 Query: 206 SQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254 + ++S + I+ S GI+ C + + + +I AD A+Y AK +GRNR Sbjct: 454 TPFHLSGNCEVVISASIGISV-CPEDTQDATQLIRNADSAMYRAKDTGRNR 503 >gi|224373076|ref|YP_002607448.1| ggdef domain protein [Nautilia profundicola AmH] gi|223589136|gb|ACM92872.1| ggdef domain protein [Nautilia profundicola AmH] Length = 391 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 19/214 (8%) Query: 54 GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKE--LFISYNRISQLSR---IDC 108 L + ++ I E S+V I I S+ IS E I++ IS++++ D Sbjct: 181 DLEEYLNIDLIFDEKPSIVNIEIGDSIKTYEISYKKADENHKIITFKNISEINKKIYTDE 240 Query: 109 LSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 L+ N ++SS+ + N+ L + DID FKQIND GH +GD V+ LS+ + Sbjct: 241 LTKAFNRK-YLSSISNKLLNKNLCFIILDIDNFKQINDTKGHLIGDIVLQILSEVIRDNL 299 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPSIHITISAGIA 225 + R GGEEF + E AA +A LR+ IE + +T S G++ Sbjct: 300 RKDDYFIRWGGEEFLIIPNNVEDSETAAKIAEHLRQAIEKTNF----MEVDKVTCSFGVS 355 Query: 226 ERCH----KEPISTIIYRADQALYVAKKSGRNRV 255 C+ K+ I + +AD+ALY AK++G+N+V Sbjct: 356 --CNSVKTKDDIKNLFKKADKALYKAKETGKNKV 387 >gi|224373747|ref|YP_002608119.1| diguanylate cyclase [Nautilia profundicola AmH] gi|223588457|gb|ACM92193.1| diguanylate cyclase [Nautilia profundicola AmH] Length = 469 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 6/133 (4%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 N ++ I+ DID FK+IND +GH GD V I+ +S ++ +F+ R GGEEF Sbjct: 338 NTQVGIIMLDIDDFKKINDTYGHDTGDLVLISLVSTIKQIIRKNDIFI-RYGGEEFVIIL 396 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQ 242 S+ + +A +RK +E +I+I TIS GI+E HK+ I I RAD Sbjct: 397 PNSNIENTYKIAEKIRKEVEKIKIHIGD-KHFSFTISIGISE-IHKDDSSIYEAIKRADI 454 Query: 243 ALYVAKKSGRNRV 255 LY AK++G+NRV Sbjct: 455 NLYKAKRNGKNRV 467 >gi|170020293|ref|YP_001725247.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli ATCC 8739] gi|169755221|gb|ACA77920.1| diguanylate cyclase with PAS/PAC sensor [Escherichia coli ATCC 8739] Length = 410 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D + FK IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTNRFKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|84385152|ref|ZP_00988184.1| Sensory box/GGDEF family protein [Vibrio splendidus 12B01] gi|84379749|gb|EAP96600.1| Sensory box/GGDEF family protein [Vibrio splendidus 12B01] Length = 353 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 19/170 (11%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYN---EKLS-----IVFFDIDYFKQINDNFGHPV 150 R+ L D L+G N F L Y+ E+ + D+D+FK INDN GH Sbjct: 184 RLRMLVDTDSLTGCWNRRRFDKDLNHYSNLAERYGYTHSCLALIDLDHFKAINDNHGHDQ 243 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + +++ L V R+GGEEFA ++ EA L+++ I Sbjct: 244 GDSALKEVAELLRNNSRDTDIVARVGGEEFAILMPETNLAEAFEAMYRLKEV-------I 296 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 + G ++++T+S+G++E + + YR AD+ALY AK +GRNRV S Sbjct: 297 TKGTTLNLTVSSGVSE---IQAQAEATYRSADKALYRAKGNGRNRVCSSS 343 >gi|148546421|ref|YP_001266523.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148510479|gb|ABQ77339.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] Length = 754 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 34/192 (17%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140 +L +L + + Q + D L+ LLN F + + S N +L+++F DID+FK Sbjct: 275 LLSQLDQARASLQQAAHYDALTNLLNRRGFNQVFAERLVETQASEN-RLAVMFLDIDHFK 333 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN--- 197 +IND+ GH GD+++ ++ + + V R GG+EF +S EA LA Sbjct: 334 RINDSLGHDAGDELLKVIAHHIKAATRSHDLVARFGGDEFCVVTSLNSRDEARHLAQRIM 393 Query: 198 -------DL--RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 DL R+++ + I IS P G AE ++ AD ALY +K Sbjct: 394 QRMKDPIDLGGRRMVMTTSIGISIFPD-----DGGTAEE--------LLKHADLALYQSK 440 Query: 249 KSGRNRVVCFSD 260 +GRN + F+D Sbjct: 441 DNGRNSLNFFND 452 >gi|300871898|ref|YP_003786771.1| putative GGDEF domain-containing protein [Brachyspira pilosicoli 95/1000] gi|300689599|gb|ADK32270.1| putative GGDEF domain protein [Brachyspira pilosicoli 95/1000] Length = 274 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 5/168 (2%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGDKVIAF 157 ++S L+ D L+ L N + L + +++ SI+ D+D FK ND++GH VGD V+ Sbjct: 104 KLSFLANRDKLTNLYNRGYLLKYLENKKDEIYSIIIIDLDKFKHYNDSYGHNVGDHVLKI 163 Query: 158 LSDQLVVVFGTPMF---VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 S + + + R GGEEF +++E + +RK I + + + Sbjct: 164 ASRVMRETIKNIKYSSLLARYGGEEFIIVIDTKTKKELFNIMETIRKTIYETDFS-TDEY 222 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 S+ T S G A + + I+++I +AD+ALY AK++GRN+ + + E Sbjct: 223 SLKATASFGGAIKTDNDTINSLIEKADKALYEAKETGRNKSIINNHTE 270 >gi|228951120|ref|ZP_04113236.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068313|ref|ZP_04201616.1| Sensory box/GGDEF [Bacillus cereus F65185] gi|229077940|ref|ZP_04210550.1| Sensory box/GGDEF [Bacillus cereus Rock4-2] gi|229177154|ref|ZP_04304543.1| Sensory box/GGDEF [Bacillus cereus 172560W] gi|228606335|gb|EEK63767.1| Sensory box/GGDEF [Bacillus cereus 172560W] gi|228705398|gb|EEL57774.1| Sensory box/GGDEF [Bacillus cereus Rock4-2] gi|228714774|gb|EEL66646.1| Sensory box/GGDEF [Bacillus cereus F65185] gi|228808530|gb|EEM55033.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 569 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF + + LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|315446070|ref|YP_004078949.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein [Mycobacterium sp. Spyr1] gi|315264373|gb|ADU01115.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein [Mycobacterium sp. Spyr1] Length = 642 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 32/184 (17%) Query: 100 ISQLSRIDCLSGLLN------HSA-FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++ ++ D L+GL N H+A S + E+++ +F D+D+FK ND +GH GD Sbjct: 430 LTDMANTDPLTGLANRRGLAQHAADLWSRARAAGEQVTALFIDLDHFKSFNDLYGHQAGD 489 Query: 153 K-------VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE 204 + V+A L+D V V R GGEEFA +G + QE A+ L I Sbjct: 490 ECLRRVADVLAHLADDSVCV------AARYGGEEFAVVLVGCDAPQE---FADGLAAAIR 540 Query: 205 NSQINISSGPSIHITISAGIA--------ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I S +TIS G+A + + ++ ++ RAD+ALYVAK GRN + Sbjct: 541 ALRIPHLGTDSGMVTISVGVATLRPWHTTDSDAEAVVAELLDRADKALYVAKSRGRNAIS 600 Query: 257 CFSD 260 + D Sbjct: 601 IYGD 604 >gi|256111459|ref|ZP_05452479.1| GGDEF domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 237 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 23/229 (10%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97 IAT+I I+ G+ G++ V L +++ I++ LG S L+EL SY Sbjct: 18 IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYR 73 Query: 98 ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148 N +++++ +D L+GLLN +FI + N+ +F D+DY KQIND +GH Sbjct: 74 TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 133 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204 P GD I ++ L + + R+GG+EF A G+ ++L++ LR ++ Sbjct: 134 PAGDDAIIAVAPALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 193 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + N+ S +T+S G + ++ AD+ LY KKS R Sbjct: 194 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 237 >gi|217969750|ref|YP_002354984.1| diguanylate cyclase [Thauera sp. MZ1T] gi|217507077|gb|ACK54088.1| diguanylate cyclase [Thauera sp. MZ1T] Length = 565 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 11/177 (6%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 G L EL + L+R D L+GL N + F ++S + L+++F DID F Sbjct: 388 GQQLAELEHRRRELEHLARHDALTGLPNRALFDDRMAVALASARRDDGGLALLFVDIDDF 447 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND 198 K IND GH VGD+V+ ++ ++ R+GG+EF G +S ++A ++A+ Sbjct: 448 KPINDRLGHVVGDRVLEGVAARIRQSIRESDTAARIGGDEFVVLLPGIASAEDARVVADK 507 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254 +R I+ + G + +++S G+A ST + R AD A+Y K G+ R Sbjct: 508 IRAAIDRP--FMIDGGELAVSVSMGLAHYPQDGSDSTTLARHADAAMYRDKAEGKAR 562 >gi|154248735|ref|YP_001409560.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1] gi|154152671|gb|ABS59903.1| diguanylate cyclase [Fervidobacterium nodosum Rt17-B1] Length = 501 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 80/278 (28%), Positives = 127/278 (45%), Gaps = 37/278 (13%) Query: 12 WLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIG---LTPFYGLEYILVEN 68 ++ +K E+F TF I SIF +FI IF+ + +++ +TP +EY + N Sbjct: 230 YIVAQKPSEAFKV-TF-INLSIFTIMFILLFIFLLYMSAYFVTDTVVTPLQKIEYAIQNN 287 Query: 69 LSLVIIS-ITISLLLGYISGSI-------------LKEL-------FISYNRISQLSRID 107 VI + +G +S +I LKEL + + +L D Sbjct: 288 TPDVIERYVYQKDEIGELSRAIKHYLEQKEQINIYLKELESKNASLRMLNEEVRKLLEKD 347 Query: 108 CLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+GLL F S + S +K LS + D D FK+IND +GH GD+V+ + + Sbjct: 348 TLTGLLTRYVFNSQIERLYVSSKADKIPLSAISIDADNFKKINDTYGHAEGDEVLKKIGE 407 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 ++ F R+GGEE + A +A +R + Q S P +TI Sbjct: 408 IILKNIRLSDFPIRMGGEEILILLPEADINAAYSIAERIRNKV---QEEFKSKPYT-VTI 463 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S G+ + ++ I T + RAD ALYV+K +G+N+ F Sbjct: 464 SLGVTQLKPEDTIETFLKRADDALYVSKTNGKNQTTIF 501 >gi|83644378|ref|YP_432813.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83632421|gb|ABC28388.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 928 Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 5/164 (3%) Query: 103 LSRIDCLSGLLNH-SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+R+ S L H ++ I+S +L+++F D+D FKQ+NDN GH VGDK++ +S + Sbjct: 498 LTRLPNRSYLFEHLNSLIASHKREQARLAVLFIDLDRFKQVNDNLGHGVGDKLLQQVSTR 557 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITI 220 L + RLGG+EF E+ AI + +++ + S G +HI Sbjct: 558 LKSRLRESDMLARLGGDEFTVVLPHLREETDAIHVAKM--LLQQLADSFSVGDYELHIGA 615 Query: 221 SAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S G+ E ST+I AD A+Y AK +GRN+ F + N Sbjct: 616 SIGVTLFPKDGEDASTLIKNADIAMYKAKDNGRNQYRFFEERMN 659 >gi|300789504|ref|YP_003769795.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis mediterranei U32] gi|299799018|gb|ADJ49393.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis mediterranei U32] Length = 480 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 20/182 (10%) Query: 97 YNRISQLS------RIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +NR+++L R D +G+LN + + ++L+++ D+D+FK IN Sbjct: 290 FNRLAELDQLQNDVRTDPKTGILNMRGWSEAAERALERTSRSGDQLALLMVDLDHFKWIN 349 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GHP GD V+ ++ L V VGR GGEEF E A +R I Sbjct: 350 DTYGHPAGDDVLRTVAQTLDEVTRPSDLVGRFGGEEFLILLPDIDEDATWDAAERIRIAI 409 Query: 204 ENSQI---NISSGPSI--HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + P+ T S G+A H + + ++ AD A+Y+AK++GR++ VC Sbjct: 410 AKLHMVTTDKRGDPATIADRTTSIGVARHPRHGDTLERLLQSADAAVYLAKENGRDQ-VC 468 Query: 258 FS 259 F+ Sbjct: 469 FA 470 >gi|281491144|ref|YP_003353124.1| diguanylate cyclase [Lactococcus lactis subsp. lactis KF147] gi|281374894|gb|ADA64413.1| Diguanylate cyclase with GAF sensor domain [Lactococcus lactis subsp. lactis KF147] Length = 351 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 19/188 (10%) Query: 84 YISGSILKELFISYNRISQLSRI------DCLSGLLNHSAFISSLGSYNEK---LSIVFF 134 Y+ +IL +F+ Y I+ + ++ D L+ + N S F + L +K S+ Sbjct: 167 YVISTIL--VFVLYYMINDIKKMQKKATHDYLTKMKNRSEFQAKLEVLQKKKKIFSLAIL 224 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DIDYFK ND+F H VGD V+ +S L+ G + R+GGEEF +L E Sbjct: 225 DIDYFKLFNDSFNHLVGDLVLLEVSKVLLSFEGNKINCYRIGGEEF---SLVFEEINFVE 281 Query: 195 LANDLRKI-IENSQINIS----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 + N L KI + +INI G IT+S G++ I I AD ALY AK+ Sbjct: 282 VENKLEKIRLAVQKINIDEMLLDGEVRCITVSIGVSHIKAFSNIENYISSADDALYKAKE 341 Query: 250 SGRNRVVC 257 +GRN++V Sbjct: 342 NGRNQLVV 349 >gi|260893325|ref|YP_003239422.1| diguanylate cyclase [Ammonifex degensii KC4] gi|260865466|gb|ACX52572.1| diguanylate cyclase [Ammonifex degensii KC4] Length = 414 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 12/190 (6%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFF 134 LG + + L ++ Y + +L+ D L+GL N F + Y KL+I+ Sbjct: 230 LGRLGAAALVNSYL-YREVKELAERDGLTGLYNRRKFWEIFLKELERAKRYRRKLAILLL 288 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+D FK ND FGH GD+ + + + + R GGEEF + + + A Sbjct: 289 DVDNFKDYNDTFGHLAGDECLRRIGEVIGKEIRASDTAARYGGEEFVILLVETGGEGAVA 348 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +A LR +E+ P+I + ++ + E + T AD ALY AK+SG+NR Sbjct: 349 VAERLRHRVEDIGKR-EPFPTISLGVAVFPEDAQSAEALLTC---ADNALYTAKRSGKNR 404 Query: 255 VVCFSDIENN 264 V I ++ Sbjct: 405 TVWRGKIRSS 414 >gi|150398040|ref|YP_001328507.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae WSM419] gi|150029555|gb|ABR61672.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae WSM419] Length = 661 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 12/176 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N A L Y + V D+D+FK+ ND +GH GD+ Sbjct: 225 RLSHTDSLTGLDNRRAVDQKLRDYWSDWQRGGNSFAAVLIDVDFFKRYNDFYGHQEGDRC 284 Query: 155 IAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NI 210 + +++ L +GR GGEEF A + + AA LA +R+ +E + Sbjct: 285 LVLVANALKDSIARYDASIGRYGGEEFIVLARLKTRERAAELAEAIRRSVEYLALPHEQR 344 Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G SI +++ AG + +I+ AD+ALY AK +GRN F + T Sbjct: 345 RDGMSIVTVSVGAGFTRNQIGSKLERLIHEADRALYGAKANGRNCARLFDPNDPQT 400 >gi|28900924|ref|NP_800579.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus RIMD 2210633] gi|260366137|ref|ZP_05778597.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|260879779|ref|ZP_05892134.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus AN-5034] gi|260896824|ref|ZP_05905320.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus Peru-466] gi|260902989|ref|ZP_05911384.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|28809370|dbj|BAC62412.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus RIMD 2210633] gi|308087315|gb|EFO37010.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus Peru-466] gi|308092649|gb|EFO42344.1| putative virulence-mediating protein VirC [Vibrio parahaemolyticus AN-5034] gi|308108382|gb|EFO45922.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|308114774|gb|EFO52314.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] Length = 637 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 18/168 (10%) Query: 100 ISQLSRIDCLSGLLNH---SAFISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++Q S D L+GL N ++ + + + ++ D+D+FK ND +GH +GD++ Sbjct: 468 LTQESTTDLLTGLHNRRYLEVWLEKMVRRTPDRTFALAVLDVDHFKAFNDTYGHDIGDQM 527 Query: 155 IAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 + ++ +F G R GGEEF + + A LR +IEN+ + I Sbjct: 528 LMHIAS----IFNESTRSGDLLIRWGGEEFVLLVEVNDPNDCAKSLERLRHVIENTPLII 583 Query: 211 SSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNR 254 S P I+ TIS G +R K+ + ADQALY AK++GRN+ Sbjct: 584 DSKP-INATISLGAVDRLSAQTIKQEWDQWFFLADQALYDAKQAGRNQ 630 >gi|194433825|ref|ZP_03066099.1| sensory box-containing diguanylate cyclase [Shigella dysenteriae 1012] gi|194417928|gb|EDX34023.1| sensory box-containing diguanylate cyclase [Shigella dysenteriae 1012] gi|332098150|gb|EGJ03123.1| hypothetical protein SD15574_0397 [Shigella dysenteriae 155-74] Length = 410 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D K IND +GH GD+V+ L+ Sbjct: 256 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRLKHINDLYGHSKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 316 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 409 >gi|332558451|ref|ZP_08412773.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides WS8N] gi|332276163|gb|EGJ21478.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides WS8N] Length = 830 Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 12/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++R D L+GL N F ++SL ++++ D+D FK +ND GHPVG Sbjct: 390 QVFHMARHDMLTGLPNRHYFGDCYQEAVASLAP-ERSVAVLMLDLDGFKTVNDTRGHPVG 448 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210 D+V+ ++++L + V RLGG+EFA SEQEA LA R I S+ Sbjct: 449 DQVLCEVANRLRTSVRSTDTVARLGGDEFAVIQTPIRSEQEACDLAR--RLIAAISKPFD 506 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + S GIA R + I+ AD ALY AK++GR F + Sbjct: 507 LEGAVPEVGASVGIAFARGRGDSAEEIMRYADVALYAAKQAGRGTFRVFDE 557 >gi|313682226|ref|YP_004059964.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313155086|gb|ADR33764.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 408 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 19/193 (9%) Query: 81 LLGYISGSILKELFI---------SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--- 128 + GY++ ++ LFI +Y + + S ID L+ + N F+ ++ Sbjct: 199 IAGYLAVTVTGLLFIQFFGRRLAKAYRMLEEQSIIDPLTEIPNRRFFMKRAKEEFQRAER 258 Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA 183 ++++ DIDYFK ND +GH GD + +++ + P + R GGEEF Sbjct: 259 DHTPIALIMVDIDYFKGFNDRYGHIEGDVTLKTVAETMKQQLRRPPDCIARYGGEEFVIM 318 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE-PISTIIYRAD 241 ++ + AA +A LR IE +IN + +TIS G+A H + +AD Sbjct: 319 LPNTTPEGAAKVAELLRTEIEALKINNEASKCADVVTISLGVATAPHDGVSFEIQLKQAD 378 Query: 242 QALYVAKKSGRNR 254 +ALY AK++GRNR Sbjct: 379 EALYAAKQNGRNR 391 >gi|291279544|ref|YP_003496379.1| hypothetical protein DEFDS_1154 [Deferribacter desulfuricans SSM1] gi|290754246|dbj|BAI80623.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 302 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 13/181 (7%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134 L + S +L+E ++ L D L+ L NHS F L Y N+ ++ Sbjct: 122 LAFASTYVLEE----KEKMEDLVNKDNLTNLYNHSFFQKKLREYFTLAKKTNKIFNVAIL 177 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK++ND +GH GDKV+ + L V R GGEEF + Sbjct: 178 DIDFFKKVNDTYGHLAGDKVLKDFAKILKENTRKTDIVARYGGEEFGIIIPDCDKTCTEK 237 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 + ++ ++ N I IT SAG E K + ++ AD LY++K SGRN Sbjct: 238 VLEKIKDVVTNHIFEFED-YKIKITFSAGFTEYNDKYKSAKEMLANADIGLYMSKNSGRN 296 Query: 254 R 254 R Sbjct: 297 R 297 >gi|221639437|ref|YP_002525699.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodobacter sphaeroides KD131] gi|221160218|gb|ACM01198.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodobacter sphaeroides KD131] Length = 816 Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 12/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++R D L+GL N F ++SL ++++ D+D FK +ND GHPVG Sbjct: 376 QVFHMARHDMLTGLPNRHYFGDCYQEAVASLAP-ERSVAVLMLDLDGFKTVNDTRGHPVG 434 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210 D+V+ ++++L + V RLGG+EFA SEQEA LA R I S+ Sbjct: 435 DQVLCEVANRLRTSVRSTDTVARLGGDEFAVIQTPIRSEQEACDLAR--RLIAAISKPFD 492 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + S GIA R + I+ AD ALY AK++GR F + Sbjct: 493 LEGAVPEVGASVGIAFARGRGDSAEEIMRYADVALYAAKQAGRGTFRVFDE 543 >gi|204927721|ref|ZP_03218922.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323063|gb|EDZ08259.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 663 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|192293404|ref|YP_001994009.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] gi|192287153|gb|ACF03534.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 400 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 93/185 (50%), Gaps = 14/185 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVF 133 L+ YI + ++L + ++L+R D L+ L N + L + E +++ Sbjct: 183 LIDYIHATTAEQLTLRAE-ATRLARADALTNLPNRRHLVEHFNELAKRLARHGENFAVIS 241 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D+FK+ ND FGH GD+++ +++++ + R+GG+EF S+ A Sbjct: 242 LDLDFFKEANDRFGHAAGDEILRIVAERMTELLADDDLAARIGGDEFVVVQANVSD---A 298 Query: 194 ILANDL-RKIIEN-SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250 A+DL R+I+ S+ +G ++ I S G A + ++++AD+ALY K++ Sbjct: 299 AEADDLGRRIVAALSEPYAIAGEAVMIGASFGRALAPADGATLDELLHKADEALYAVKRN 358 Query: 251 GRNRV 255 RV Sbjct: 359 RPGRV 363 >gi|83643744|ref|YP_432179.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631787|gb|ABC27754.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 469 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 89/182 (48%), Gaps = 21/182 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQI 142 L EL + + + +L+ D L+G+ N F E LS++ DID FK+ Sbjct: 282 LLELVRNRDLLKKLTLTDALTGVPNRRNFQEVYRREWFRACRAREPLSLIMIDIDNFKRF 341 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE-----AAILA 196 ND +GHP GD + ++ + V FV RLGGEEF L ++ E A + Sbjct: 342 NDFYGHPAGDACLQKVAKMIYQVRKRNTDFVARLGGEEF-VVILPDTDAEGGQRFADAML 400 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRN 253 N +RK+ + N G I +TISAG+ C+ P ++ AD+ LY AKK GRN Sbjct: 401 NAVRKLAIAHEHN--DGKKI-VTISAGLVT-CYPGPHISRENLLSTADECLYQAKKEGRN 456 Query: 254 RV 255 RV Sbjct: 457 RV 458 >gi|332142675|ref|YP_004428413.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552697|gb|AEA99415.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 456 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 17/174 (9%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +L+ D L+GL N S+ ++ + +L ++F DID FK IND+FGH G Sbjct: 25 QMERLANFDALTGLPNRQFLMKILSSELTKARTNRSELGLLFVDIDGFKSINDSFGHDTG 84 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEF--AAAALGSS---EQEAAILANDLRKIIENS 206 DK + +S + + +GRLGG+EF A +G E AA L + + + Sbjct: 85 DKFLLHISVIMSKLLDEAYTLGRLGGDEFIIIAPDIGDPKTLEDMAAKLVVAVSRTHNFN 144 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + SG +++ +A C+ E +S++I AD A+Y AK SG+ R + F++ Sbjct: 145 TLRLDSG----VSVGLALASDCNYE-LSSLITNADVAMYKAKGSGKARFMWFNE 193 >gi|330502616|ref|YP_004379485.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328916902|gb|AEB57733.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina NK-01] Length = 554 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 18/162 (11%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL--------SIVFFDIDYFKQINDNFGHPVGDKVI--- 155 D L+ L N F+ L + +L +I+ FD+DYFK IND +GH VGD+ + Sbjct: 395 DFLTQLANRRHFMHRLEAELARLQRNPEQSAAILMFDLDYFKAINDRWGHNVGDQALRHF 454 Query: 156 -AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 A LS QL GRLGGEEFA +S +A A ++ + + I +G Sbjct: 455 AAILSSQLRRTD----TAGRLGGEEFAVVLSEASLDKAMHFATRIQNELAGTPIQ-HAGE 509 Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I++ +S GI+ + + R+D ALY AK+ GRNR+ Sbjct: 510 QIYLAVSVGISLLNAGDASVEAALSRSDIALYCAKRGGRNRI 551 >gi|303238372|ref|ZP_07324907.1| response regulator receiver modulated diguanylate cyclase [Acetivibrio cellulolyticus CD2] gi|302594076|gb|EFL63789.1| response regulator receiver modulated diguanylate cyclase [Acetivibrio cellulolyticus CD2] Length = 349 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 14/172 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + QL+ D L+ L N + L S Y E +S++ DIDYFK+IND+FGH GD Sbjct: 147 LEQLAITDSLTELYNKGYILKRLESELTRSARYKESISLIIIDIDYFKKINDSFGHIAGD 206 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ LS +L V R GGEEF +S AAILA +R+ ++N +I + Sbjct: 207 NILKRLSKKLAESVRDVDIVARYGGEEFLVICPNTSISGAAILAERIRENVQN-EIFQAG 265 Query: 213 GPSIHITISAGIAERCHKEPIS------TIIYRADQALYVAKKSGRNRVVCF 258 +I +T+S G++ + ++ AD ALY AK +GRN+V F Sbjct: 266 STNIKLTLSLGLSNLSPSTLAAGNFSSGKLLEEADLALYKAKSAGRNKVAAF 317 >gi|296104056|ref|YP_003614202.1| putative diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058515|gb|ADF63253.1| putative diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 459 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFK 140 ++L ELF R +D L+ LLN I+ LS++ D+D FK Sbjct: 281 TLLHELFDEVAR--HEVGVDVLTRLLNRRFLPTIFKREITQASRSGTPLSVLLIDVDKFK 338 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 QIND +GH GD+++ ++ T +V R GG+EF +E + +A +R Sbjct: 339 QINDTWGHNTGDEILRKVAGAFYDNVRTCDYVFRYGGDEFLIVLTEITEADTLRIAERIR 398 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + +E +++ +G I +++S G A +I AD+ALY AK+ GRN Sbjct: 399 RRVEKIKVHSPTGEPIPLSLSIGAAMFNGHPDYERLIQAADEALYGAKRRGRN 451 >gi|225378479|ref|ZP_03755700.1| hypothetical protein ROSEINA2194_04147 [Roseburia inulinivorans DSM 16841] gi|225209702|gb|EEG92056.1| hypothetical protein ROSEINA2194_04147 [Roseburia inulinivorans DSM 16841] Length = 641 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 85/169 (50%), Gaps = 10/169 (5%) Query: 105 RIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 ++D L+ + N +A + ++ EK + + DID FK+IND FGH VGD VI+ ++ Sbjct: 282 QLDPLTRIYNKTASGEIVDAFLEKSTQGTHVLYVIDIDDFKKINDTFGHTVGDMVISDIA 341 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHI 218 + F VGR+GG+EF +S QEA A L N Q +S G I + Sbjct: 342 TLIREQFTDEAVVGRVGGDEFMVFVKDTSLQEAEAKAEQL---CTNVQKTLSGDGAVIVV 398 Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 T+S G+A ST+ RAD A+Y KK+G+N + E C Sbjct: 399 TLSVGMAVTGKDGYDYSTLFERADHAMYHIKKNGKNHYGFAGETEEGDC 447 >gi|160898922|ref|YP_001564504.1| diguanylate cyclase [Delftia acidovorans SPH-1] gi|160364506|gb|ABX36119.1| diguanylate cyclase [Delftia acidovorans SPH-1] Length = 409 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 15/176 (8%) Query: 88 SILKELFISYNRISQ----LSR---IDCLSGLLNHSAF-------ISSLGSYNEKLSIVF 133 ++L EL + R+ Q L R D L+GL N F + S +KL+++F Sbjct: 223 ALLAELQTRHERLQQQNSALERQASRDSLTGLANRLHFEQRLQQALDSAAESGQKLAVLF 282 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D D FKQ+ND +GH VGD ++ + +L V RLGG+EFA A Sbjct: 283 LDNDRFKQVNDAYGHAVGDVLLKAVGARLRSQVRETDLVARLGGDEFAILLYPVGGGGDA 342 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAK 248 + D + + +S G + ++SAG+A H + + T++ ADQA+Y AK Sbjct: 343 QMVRDKIEAAMREPLVVSEGVVLQPSVSAGVALFPKHGQSMETLMRHADQAMYQAK 398 >gi|78356674|ref|YP_388123.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219079|gb|ABB38428.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 561 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 8/163 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+G+ N +AF L E++ ++++ D++YFK++ND +GH VGD V Sbjct: 388 RLATKDDLTGVSNRAAFRDMLKKSVEEVKESSICSALLYIDLNYFKKVNDKYGHYVGDMV 447 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSG 213 + ++ +L T +GR+GG+EF G E A+ LA D+R +++ N+ Sbjct: 448 LREVAARLSSRVRTADVIGRVGGDEFCVLLRGVGGVERAVSLAEDMRGVLDKPFENLPEE 507 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++I + + + RAD A+Y AK +GR VV Sbjct: 508 HRLGMSIGVLLLQPPDVVDAGEAMRRADSAMYHAKTTGRGVVV 550 >gi|103487777|ref|YP_617338.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingopyxis alaskensis RB2256] gi|98977854|gb|ABF54005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingopyxis alaskensis RB2256] Length = 784 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 21/186 (11%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139 GS + E + +I++++R D L+GL N + L + +++ D+D F Sbjct: 337 GSDVTEQRATAEQIARMARFDNLTGLPNRLSLNEDLARALTRAIEAKSRCALLMIDLDRF 396 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA------ 193 K +ND GHPVGDK++A ++ +L + M GRLGG+EFA S A Sbjct: 397 KAVNDTLGHPVGDKLLAQVAARLKGLMERGMTCGRLGGDEFAVVLHNLSSPAVAEDLAQR 456 Query: 194 ILANDLRK-IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 I+A R +++N Q+ + + I + G + T+ AD ALY +K G Sbjct: 457 IIATISRPYVVDNHQLFVGASVGYAIGPTDGAT-------VETLTRNADLALYKSKDRGG 509 Query: 253 NRVVCF 258 N V + Sbjct: 510 NVVAAY 515 >gi|205359697|ref|ZP_03224392.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343837|gb|EDZ30601.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 663 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|169336972|ref|ZP_02620191.2| signal transduction protein containing diguanilate cyclase/phosphodiesterase domain [Clostridium botulinum C str. Eklund] gi|169296491|gb|EDS78624.1| signal transduction protein containing diguanilate cyclase/phosphodiesterase domain [Clostridium botulinum C str. Eklund] Length = 368 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 YN+I +++ D L G+ N F + + E +IV DID FK +ND +GH V Sbjct: 200 YNKIREIAIRDPLIGIYNRKHFFNIVEKKIKDDKNKECFAIVMMDIDDFKNVNDKYGHQV 259 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEE--FAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ ++ VGR GGEE + S E+ ++ + RKI EN I Sbjct: 260 GDEVLKKTGKIILDNLNKCDIVGRYGGEEIIMYVSNFNSKEEVYNVIDSIRRKISEN--I 317 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVV 256 + G + IT S GI + ++++I AD LY+AK+S +N VV Sbjct: 318 IMHEGMEVSITASFGIGYYMEDGKTLNSVISVADNRLYIAKESNKNMVV 366 >gi|161613817|ref|YP_001587782.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363181|gb|ABX66949.1| hypothetical protein SPAB_01551 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 663 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|157370239|ref|YP_001478228.1| diguanylate cyclase [Serratia proteamaculans 568] gi|157322003|gb|ABV41100.1| diguanylate cyclase [Serratia proteamaculans 568] Length = 366 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 64/127 (50%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D FK+IND +GH GD ++ + L + FVGR GGEEF + Sbjct: 224 LMILDLDNFKRINDTYGHLAGDLLLTQMGQLLQNSVRSEDFVGRYGGEEFMVITASYDPK 283 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +A +R+ +E + + G IT+S G + + I D+ALY AK+ Sbjct: 284 IIGGVAERIRRSVETTIFLLDEGNETQITVSIGASLYLPGMAVDKAIEVTDEALYEAKRG 343 Query: 251 GRNRVVC 257 G+N+VVC Sbjct: 344 GKNQVVC 350 >gi|66047433|ref|YP_237274.1| GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63258140|gb|AAY39236.1| GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 361 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 19/231 (8%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG--- 87 S+FF FI + A I+L L + V+++ L + + S LLG Sbjct: 108 MSVFFVKFIDYIAAAALIWLIMWQ----TDLTAVGVDHVPLFYVFLISSTLLGGCLNATF 163 Query: 88 -SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVF--FDIDYFKQ 141 S++ + + +R +LS D L+ N A ++ L + +K S+ F D+D+FK Sbjct: 164 LSLIMQTMAARDRYQELSETDTLTHAPNRRALVAGLNTALASADKSSLWFAMLDLDHFKS 223 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND GH VGD V+ + L G F GRLGGEEF L ++ AI A L Sbjct: 224 INDTHGHDVGDNVLISFATLLKSTKGLISF-GRLGGEEF-GVILSAANATDAIHA--LEG 279 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 ++ +Q + + + S G+A E I+ ++ AD+ LY AK+SGR Sbjct: 280 LLMLAQHD--DAAQVPYSFSGGVASLSRVETINDLLKEADENLYYAKRSGR 328 >gi|17548601|ref|NP_521941.1| hypothetical protein RS00808 [Ralstonia solanacearum GMI1000] gi|17430849|emb|CAD17531.1| probable signal transduction protein eal-ggdef domains [Ralstonia solanacearum GMI1000] Length = 578 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 21/183 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGH 148 + RI L+ D L+GLLN A +L N ++S++F D+D FK +ND GH Sbjct: 132 AQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNRSRVSVMFLDLDRFKNVNDTLGH 191 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+++ ++ +L V RLGG+EF ++ R++ E Sbjct: 192 QFGDQLLREVAARLQACAREADTVARLGGDEFVVML-------ESLDGTGTRRVAERILA 244 Query: 209 NISS-----GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261 I + G + + +S GIA H + +T++ +AD A+Y+AK+ GRN F SD+ Sbjct: 245 AIGAPFHIDGQELFLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQTFTSDL 304 Query: 262 ENN 264 ++ Sbjct: 305 DDR 307 >gi|87308849|ref|ZP_01090988.1| putative diguanylate cyclase (GGDEF) [Blastopirellula marina DSM 3645] gi|87288560|gb|EAQ80455.1| putative diguanylate cyclase (GGDEF) [Blastopirellula marina DSM 3645] Length = 544 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 15/163 (9%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+ L N F + S++ DID+FK+ ND +GH GD+V+ Sbjct: 168 ARTDALTALPNRRVFDHEMSRRLQEFQKTRRPTSLMMLDIDHFKKFNDTYGHMAGDEVLK 227 Query: 157 FLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + L V T +G R GGEEFA GS+ ++ I A + + + + +I + Sbjct: 228 SAARTLERVAST---IGGAAIRFGGEEFAVILPGSNIFDSQIAAARVVRAVASMEI-VFE 283 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G + +T S G+AE + + +I RAD ALY AK +GRNR Sbjct: 284 GQLLQVTTSCGVAEVNRNDDEANLIKRADSALYAAKNAGRNRA 326 >gi|117926804|ref|YP_867421.1| diguanylate cyclase with PAS/PAC sensor [Magnetococcus sp. MC-1] gi|117610560|gb|ABK46015.1| diguanylate cyclase with PAS/PAC sensor [Magnetococcus sp. MC-1] Length = 654 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 93/175 (53%), Gaps = 14/175 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 + + + + + QLS D L L N F L +L+++ D+D FKQ+ Sbjct: 471 MGQQMAAQDEMQQLSFYDVLCALPNQVLFKEQLLQGLREASRRAGELAVLMLDLDRFKQV 530 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLR 200 ND++G +GD+++ ++ +L + + V R+GG+EFA L + ++ A++A + Sbjct: 531 NDSYGVEIGDRLLQEVAKRLRTLLRSEDTVARMGGDEFAIVLRQLSEAPEDVALVA---Q 587 Query: 201 KIIENSQINISSGPSI-HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 KII+ + I+ P I +S GI+ H E ++ +A+QA+ +AK+SGRN Sbjct: 588 KIIDALSMPIAINPQWCQIGVSIGISIYPKHGEQAEELLTKANQAMQMAKQSGRN 642 >gi|330827759|ref|YP_004390711.1| Gaf domain/GGDEF domain/eal domain-containing protein [Aeromonas veronii B565] gi|328802895|gb|AEB48094.1| Gaf domain/GGDEF domain/eal domain protein [Aeromonas veronii B565] Length = 758 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 7/167 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ ++QL L LNH+ ++ Y +++F D+D+FKQIND GH GD+++ Sbjct: 333 HDPLTQLPNRALLMNHLNHA--MTHYNRYKSPGFAVIFIDVDHFKQINDTLGHSAGDQLL 390 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214 +S +L V RLGG+EF S + L +II G Sbjct: 391 KEVSRRLQTCIRQNDLVARLGGDEFVIYLDSSKSDDDISPV--LNRIISRLSYPFRLLGN 448 Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + IT+S G++ + IS ++++AD A+Y AK++GR+R+V +SD Sbjct: 449 ELSITVSLGVSSVSEQTSDISQLLHQADLAMYQAKRNGRSRIVSYSD 495 >gi|113868485|ref|YP_726974.1| signal transduction protein [Ralstonia eutropha H16] gi|113527261|emb|CAJ93606.1| signal transduction protein [Ralstonia eutropha H16] Length = 421 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 92/178 (51%), Gaps = 19/178 (10%) Query: 89 ILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134 +L EL N++ +R D L+GLLN +AF+ +L + +E ++++ Sbjct: 229 LLDELQTWQNQMQHENRSLAHRANHDALTGLLNRAAFVEALEHAVRHAAANDEYAAVLYL 288 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEA 192 D D FK IND GH GD V+ ++ ++ V R+GG+EFA AAAL + Sbjct: 289 DSDDFKNINDRHGHAAGDAVLVAVAQRIRASLRAGDTVARIGGDEFAVLAAALRAPRDAI 348 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249 I + L+ + ++ I++ G ++ ++S G+A H + +++ AD A+Y AK+ Sbjct: 349 HIAEHILQAM--SAPIDLPDGSTVQASLSIGLAVFPVHAQGSQALLHAADAAMYGAKR 404 >gi|325925953|ref|ZP_08187320.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] gi|325543618|gb|EGD15034.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] Length = 469 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 16/200 (8%) Query: 71 LVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-- 125 +V+ ++ +LLLG ++ L+ + + ++S + +D L+G+ N AF L Sbjct: 269 IVVAALGCTLLLGVGIWLDLQ-LRRMHRNEAKLSTEAWVDALTGIANRRAFDHRLSRALQ 327 Query: 126 -----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179 LS++ D+D+FK ND +GH GD + ++ + + R GGEE Sbjct: 328 DAVRLEAPLSVLMIDVDHFKLYNDTYGHVNGDACLRLIAGAIAGCSRRSEDLAARYGGEE 387 Query: 180 FAAAALGSSEQEAAILANDLRK-IIENSQINISSGPSIHITISAGIAE-RCHKEPIS--T 235 F + A LA+ +R + E +++SS S H+T+S G A + P+S Sbjct: 388 FGMILPHTDAAGALRLADAVRNAVAELGLMHLSSPTSAHVTVSIGAATFEPGEAPLSPNA 447 Query: 236 IIYRADQALYVAKKSGRNRV 255 I++ AD ALY AK+ GRNR Sbjct: 448 IVHDADSALYRAKQKGRNRT 467 >gi|293605198|ref|ZP_06687586.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553] gi|292816383|gb|EFF75476.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553] Length = 315 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 18/179 (10%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFK 140 S+ KEL + LS D L+ + N F SS + NE+ LS++ FD+D+FK Sbjct: 137 SLQKELEV-------LSFKDGLTNIANRRRFDSSFELEWERARNERQPLSVLLFDVDFFK 189 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 Q ND +GH GDK + ++ L + P V R GGEEF G+ A +A Sbjct: 190 QYNDLYGHTQGDKCLVDIAQTLSLALDGPRDLVARYGGEEFVVLLPGADASVAWKVAERC 249 Query: 200 RKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++++ I + P + ++I AG + ++ I D+ LY AK +GR+R+ Sbjct: 250 QRLLQKKSIVHALSPHGRRVTVSIGAGTLVPDEQADRASFIRAVDKQLYAAKNNGRDRI 308 >gi|260775887|ref|ZP_05884783.1| intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrio coralliilyticus ATCC BAA-450] gi|260608303|gb|EEX34472.1| intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrio coralliilyticus ATCC BAA-450] Length = 471 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 8/173 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 L L + N++ L+ D L+GL N S+L Y L + FD D+FK++ Sbjct: 290 LDALKHARNQLEVLASTDPLTGLANRRYIESTLDKQLDLHHRYGLPLVVALFDFDHFKRV 349 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH +GD+ + + + R GGEEF A +S A L + Sbjct: 350 NDQFGHQMGDEALQRFGAIVATLTRKEDVYARWGGEEFLALLPNTSLAGALTLIERITHS 409 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ + + P I +++S G+ ++ S+++ RAD LY AK +GR+R Sbjct: 410 VKAQPLEYNGAP-IALSVSVGVTAVHEQDNASSVLKRADALLYRAKANGRDRT 461 >gi|71907842|ref|YP_285429.1| GGDEF [Dechloromonas aromatica RCB] gi|71847463|gb|AAZ46959.1| GGDEF protein [Dechloromonas aromatica RCB] Length = 226 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSI----VFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+ LLN F + + N +++ D+D FK IND GHPVGD +A + Sbjct: 35 DDLTPLLNRRGFRRACDRWAGNGPMAMSACCAMIDLDGFKAINDRHGHPVGDAALAHFAT 94 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L + RLGG+EFA + S +A +L L++ + S +++ G ++ + Sbjct: 95 TLRRHLRPADTIARLGGDEFALILMECSGDDACLLLERLQQALAGSPLSVPGG-AVPLRF 153 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 SAG+AE E + ++ RAD AL AK+ G+ Sbjct: 154 SAGVAELHAAESLGQVLERADAALLDAKQLGK 185 >gi|145225719|ref|YP_001136397.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium gilvum PYR-GCK] gi|145218205|gb|ABP47609.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium gilvum PYR-GCK] Length = 643 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 32/184 (17%) Query: 100 ISQLSRIDCLSGLLN------HSA-FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++ ++ D L+GL N H+A S + E+++ +F D+D+FK ND +GH GD Sbjct: 430 LTDMANTDPLTGLANRRGLAQHAADLWSRARAAGEQVTALFIDLDHFKSFNDLYGHQAGD 489 Query: 153 K-------VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE 204 + V+A L+D V V R GGEEFA +G + QE A+ L I Sbjct: 490 ECLRRVADVLAHLADDSVCV------AARYGGEEFAVVLVGCDAPQE---FADGLAAAIR 540 Query: 205 NSQINISSGPSIHITISAGIA--------ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I S +TIS G+A + + ++ ++ RAD+ALYVAK GRN + Sbjct: 541 ALRIPHLGTDSGMVTISVGVATLRPWHTTDSDAEAVVAELLDRADKALYVAKSRGRNAIS 600 Query: 257 CFSD 260 + D Sbjct: 601 IYGD 604 >gi|152967484|ref|YP_001363268.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] gi|151362001|gb|ABS05004.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] Length = 501 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 27/206 (13%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125 +E ++ + S+ + LL+ +L+ L +R++ L+R D L+GL N + L Sbjct: 286 LEAWAVALSSVVLFLLVVMRMSGLLRHLEGQASRLADLARTDALTGLPNRRTSDAELERL 345 Query: 126 NEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL------VVVFGTP--- 169 + L + D+D FK ND FGH GD+++ + P Sbjct: 346 QTRSRAEGSPLCVAVLDLDRFKAFNDTFGHQAGDRLLVQSAQAWRGALEAGGAAAGPDRT 405 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 +GR GGEEF LG +DL + Q ++ P+ T+SAG+A Sbjct: 406 ALLGRWGGEEFVLLLLG----------HDLPASVAVVQALAATTPAGQ-TVSAGVARWDG 454 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 E + + RAD ALY AK GR++V Sbjct: 455 LESAAEVFGRADAALYAAKTGGRDQV 480 >gi|107102875|ref|ZP_01366793.1| hypothetical protein PaerPA_01003943 [Pseudomonas aeruginosa PACS2] Length = 381 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 22/178 (12%) Query: 100 ISQLSRI----DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148 IS+L R+ D L+GL N +F L + L+++ D+D+FK ND +GH Sbjct: 206 ISRLLRVMADHDSLTGLHNRRSFNQHLDRLWRQAQREQKTLALLLCDVDHFKAYNDRYGH 265 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD V+ + P+ + RLGGEEFA G++E EA + A LR ++ + Sbjct: 266 QAGDAVLQRIGAVFEANARRPLDMAVRLGGEEFALLLYGANEHEARLRAEALRAQVQALR 325 Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYR-------ADQALYVAKKSGRNRVVC 257 + + +S + +T+S G++ C + R AD+ALY AK GRN+VV Sbjct: 326 MEHEASDTAREVTLSVGVS--CLWPTPGNDLKRLYDLYEHADRALYEAKAFGRNQVVA 381 >gi|323494641|ref|ZP_08099744.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] gi|323311074|gb|EGA64235.1| GGDEF family protein [Vibrio brasiliensis LMG 20546] Length = 348 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 78/157 (49%), Gaps = 11/157 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD--Q 161 D L+G+ N SL S E S+ D+D FK +ND FGH VGD+V+ ++ Q Sbjct: 178 DALTGVYNRHELNDSLESAIEHYPCSSLSLIDVDNFKYVNDLFGHDVGDRVLISIAACIQ 237 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + +F RLGG+EF G + +LA + I N + S ITIS Sbjct: 238 QEMELDDKLF--RLGGDEFLLLHHGKDQ----LLAEEKSSRILNRVRQLPSPSEQPITIS 291 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 GIAE E I RAD ALY +K++GRNR+ + Sbjct: 292 IGIAECQPSEQAREWIKRADLALYQSKRAGRNRMTRY 328 >gi|320085801|emb|CBY95577.1| Protein gmr [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 660 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390 Query: 257 CFS 259 FS Sbjct: 391 VFS 393 >gi|197118094|ref|YP_002138521.1| response receiver sensor diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem] gi|197087454|gb|ACH38725.1| response receiver sensor diguanylate cyclase/phosphodiesterase, GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 869 Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 27/184 (14%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D ++ L N + ++ LG ++ +L+++F D+D FK IND+ GH +G Sbjct: 431 RVEYLAHYDMVTKLPNRFSLMARLGQALELAKRFSSRLAVIFIDLDRFKNINDSLGHHIG 490 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKI-------- 202 D+++ ++ +L + V RLGG+EF L +S A A+ +RKI Sbjct: 491 DRLLFQVAGRLQDTIRSADIVARLGGDEFVVVLPLINSNISA---AHAVRKIQQTLSQGY 547 Query: 203 -IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +E+ ++NI+ PSI I++ E + ++ AD A+Y AK +GRN F+ Sbjct: 548 TVESHELNIT--PSIGISVYP-----TDGETVQELMKHADLAMYHAKSAGRNSYQFFTQE 600 Query: 262 ENNT 265 N T Sbjct: 601 MNLT 604 >gi|160896954|ref|YP_001562536.1| response regulator receiver modulated diguanylate cyclase [Delftia acidovorans SPH-1] gi|160362538|gb|ABX34151.1| response regulator receiver modulated diguanylate cyclase [Delftia acidovorans SPH-1] Length = 308 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 15/175 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHS--------AFISSLGSYNEKLSIVFFDIDYFKQIND 144 L + + +L+ +D L+GL N A+ SL + E + + DID+FKQ ND Sbjct: 131 LALQRQALERLAMVDGLTGLANRRHFDDVLERAYRRSLRT-GEPVGLALIDIDHFKQYND 189 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD+ + ++ L P R GGEEFA G S +A +A R+ + Sbjct: 190 CYGHVQGDEALKAVAATLQRHARRPYDLAARFGGEEFALILPGES--DAPAMAEHFRQEV 247 Query: 204 ENSQINISSGPSI-HITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I ++ P+ +T+S G+ + P+ T + +AD LY AK GRNR+ Sbjct: 248 LRLSIAHAASPTAPQLTVSCGVLTVRQPSAAPLETWLQKADGLLYQAKAQGRNRI 302 >gi|89902336|ref|YP_524807.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89347073|gb|ABD71276.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 658 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 7/136 (5%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALG 186 L+++ D+D FK IND+FGH VGD+++ ++ +LV T VGR GG+EF+ + Sbjct: 263 LALLMLDLDRFKDINDSFGHLVGDELLQLVATRLVKQVRTIDTVGRFGGDEFSVLMEDVA 322 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQAL 244 +EQ AA +AND+ +++ + +SSG + I S GI+ P ++ +AD AL Sbjct: 323 GAEQ-AARVANDIIRVL-SEPYGLSSGVEVRIGASVGISIYPDNGLTP-ELMLQQADSAL 379 Query: 245 YVAKKSGRNRVVCFSD 260 Y AK GR R FS+ Sbjct: 380 YQAKIEGRGRFAYFSE 395 >gi|26991637|ref|NP_747062.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida KT2440] gi|24986731|gb|AAN70526.1|AE016694_9 sensory box protein/response regulator [Pseudomonas putida KT2440] Length = 708 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 15/159 (9%) Query: 107 DCLSGLLNHSAFISSLGS---YNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F + NE+ ++++ D+D FK+IND+ GH GD+V+ +++ Sbjct: 281 DPLTGLLNRRGFYQAAEGALLRNERSDKAQALMYMDLDGFKRINDSLGHDAGDRVLRWVA 340 Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +QL G+ + R+GG+EF A +L EQ L ++ + +++ G + Sbjct: 341 EQLKDCLGSEALLARMGGDEFTALFDSLPYPEQAGRFAERLLERVSISHEVD---GLDVC 397 Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +S GIA C + ++ AD A+Y AK++GR + Sbjct: 398 LGVSIGIATYPDCGAN-VEGLLRSADAAMYAAKQAGRQQ 435 >gi|332142048|ref|YP_004427786.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552070|gb|AEA98788.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 798 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 13/176 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGH 148 EL S +++ L+ D L+G N + S + +YNE SI+F DID FK IND GH Sbjct: 357 ELKSSESQLKYLAFTDALTGAGNRNLLNSIVETYNESCEPCSIIFIDIDEFKLINDTHGH 416 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILANDLRKIIE 204 VGD+++ + + V R GG+EF + ++ + L+ L+KI + Sbjct: 417 EVGDEILRACASRFKAALRGDDTVIRFGGDEFVVVTSTTCHKLLKKMTSRLSLSLKKIFK 476 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +SG IT S G+A + ++ AD A++ AK+ G+N VV FSD Sbjct: 477 T-----TSG-DFQITASIGLASSTESMSPTELLKNADIAMFSAKQGGKNGVVTFSD 526 >gi|304398353|ref|ZP_07380227.1| diguanylate cyclase [Pantoea sp. aB] gi|304354219|gb|EFM18592.1| diguanylate cyclase [Pantoea sp. aB] Length = 521 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R++ ++ D L+ +LN + L Y + S++ DID+FK +ND++GH VGD+VI Sbjct: 359 RLNSEAQTDPLTQVLNRRGLNAVLEYYRTLRQPFSVLALDIDHFKNVNDSWGHDVGDRVI 418 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L V R GGEEF G++ EA I+A +R I + + Sbjct: 419 QQVASTLRASARQSDVVCRNGGEEFLMLLPGTALDEAQIIAERVRVGIAEAWLTDVG--- 475 Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IT+S G+A + + +AD ALY AK +GRN V+ Sbjct: 476 -RITLSIGVAAWNGSQDAGLENSLKQADAALYEAKSAGRNCVIV 518 >gi|261886506|ref|ZP_06010545.1| GGDEF family protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 385 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 19/211 (9%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNHSA 117 LE + N LVI++ + L + + KEL + + +LS D L+ + N Sbjct: 179 LEMMSKRNKDLVIVNNELLELNKDLENKVQDRTKELIEANENLEKLSMADQLTEMPNRRH 238 Query: 118 FISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM 170 + +L + LS++ D+DYFK++NDN+GH GD ++ ++ L T Sbjct: 239 AMKTLDLLWKENLDSDRGLSVLMIDLDYFKEVNDNYGHDAGDYILRLVARTLKESVRTDD 298 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 V RLGG+EF + + + +AN+L K I + ++ + SA I C Sbjct: 299 IVCRLGGDEFLVICPNTMLEGSIQVANNLLKDIHSLKV---KTKNCEWNGSASIGLACMS 355 Query: 231 EPI---STIIYRADQALYVAKKSGRNRVVCF 258 I S +I AD +Y AK+SG+N CF Sbjct: 356 PDIKNYSKLIKPADDKVYEAKQSGKN---CF 383 >gi|283797989|ref|ZP_06347142.1| putative sensory box protein [Clostridium sp. M62/1] gi|291074289|gb|EFE11653.1| putative sensory box protein [Clostridium sp. M62/1] Length = 267 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 7/162 (4%) Query: 107 DCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+G LN + ++K ++ DID FK++ND +GH GD+V+ L++ L Sbjct: 102 DPLTGTLNRKGAAGCIRQSFMTDKKGTLFLLDIDNFKKVNDIYGHQAGDRVLMALANILK 161 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V V R+GG+EF G + ++ + R IIE ++ P I+IS G Sbjct: 162 VHTRRQDTVSRMGGDEFLIYLSGCVAKN--VVEDRARSIIEAFRLEGKDYPMAGISISIG 219 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRN--RVVCFSDIEN 263 ++ R +E + +ADQALY AK++G+ R+ D EN Sbjct: 220 VSMREKEESFQELYLQADQALYEAKRTGKGQYRLRKKEDSEN 261 >gi|307152922|ref|YP_003888306.1| diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306983150|gb|ADN15031.1| diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 459 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 129/258 (50%), Gaps = 22/258 (8%) Query: 12 WLCHEKNL-ESFSPHTFMIYFSIFF-SIFIATVIFIANIFLFYIGLT----PFYGLEYIL 65 WL E++L +F + F++ + F S AT + + +I +GL PF + Sbjct: 194 WLIKEQDLLPAFIIYPFLVLAPLRFGSKGAATALLLVSIMAL-LGLVHDTGPFVASSPL- 251 Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAF 118 + L L+ + + ++ ++G + + + +L + + Q++ D L+GL N +A Sbjct: 252 -KTLVLLWLFVNVAAVVGLVLAASISQLIQAKQHLEQMALYDSLTGLDNRILLTDKITAA 310 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 ++ Y +++ D+D FK IND GH +GD+V+ ++ +L + V R+GG+ Sbjct: 311 LARAKRYQNYAVVLYLDLDGFKLINDTMGHDMGDQVLIEVAKRLKMCVRQTDAVARIGGD 370 Query: 179 EFAAAALGSSE-QEAAILANDLRKIIENS-QINISSGPSIHITISAGIA-ERCHKEPIST 235 EF + Q A +A ++ +II Q++ +HI +S G+A + ++ Sbjct: 371 EFVVLLQDVNHIQGAERVAQEIIQIISRPIQLH---NKQMHIGVSIGVAVAPGNGTNLNQ 427 Query: 236 IIYRADQALYVAKKSGRN 253 ++ AD A+Y AK+SG+N Sbjct: 428 LLRNADHAMYHAKQSGKN 445 >gi|195873266|ref|ZP_03080052.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634533|gb|EDX52885.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 663 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 14/188 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFSDIENN 264 FS N Sbjct: 394 VFSPKMNQ 401 >gi|56461635|ref|YP_156916.1| intracellular signaling protein [Idiomarina loihiensis L2TR] gi|56180645|gb|AAV83367.1| Intracellular signaling protein (GAF,GGDEF domains) [Idiomarina loihiensis L2TR] Length = 369 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 19/165 (11%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N AF I + L+++ DID FK ND++GH GD+ + ++ Sbjct: 202 DGLTGIANRRAFDERITNEIQRASRHKTPLALLIIDIDQFKPYNDHYGHLQGDQALKSVA 261 Query: 160 DQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS--- 215 D + F+ R GGEEF A ++E++ N L + + N + I PS Sbjct: 262 DAMFDQLQRNTDFIARYGGEEFVAVISATNEEKTKESMNQLLEAVRN--LKIKHEPSEVE 319 Query: 216 IHITISAG------IAERCHKEPISTIIYRADQALYVAKKSGRNR 254 ++TIS G A+ ++ I+ +I +AD ALY AK GRNR Sbjct: 320 PYLTISIGGYIHKPRADEDTEDLIARMISKADSALYRAKSDGRNR 364 >gi|89092509|ref|ZP_01165462.1| probable signalling protein [Oceanospirillum sp. MED92] gi|89083021|gb|EAR62240.1| probable signalling protein [Oceanospirillum sp. MED92] Length = 381 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 9/167 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL--GSYNEKLSIVFF--DIDYFKQINDNF 146 +EL + + + LS+ D L+G+ N S F+ L E+ SI D+D FK IND + Sbjct: 209 RELDEANSELLYLSQHDSLTGIGNRSWFLQQLRHARVGEEGSIALLMIDLDGFKPINDRY 268 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GHP GD V+A + +L +V V R+GG+EFA + + A+ N II+ Sbjct: 269 GHPTGDTVLAQIGQRLKLVVRACDGVARIGGDEFAVILRDLARLDEAV--NITEGIIDAI 326 Query: 207 QINISSGPSIHITI--SAGIA-ERCHKEPISTIIYRADQALYVAKKS 250 + I S H+++ S GIA + +E + +I RAD A+Y AK+ Sbjct: 327 KQPIEVSASCHVSVGCSIGIAFDHTSEESDAALITRADTAMYDAKRQ 373 >gi|254247987|ref|ZP_04941308.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] gi|124872763|gb|EAY64479.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] Length = 466 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S L+EL + ++ ++ D ++G N FI+ + ++ D+D FK Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFK 348 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH +GD+V+ + Q + + R+GGEEF A + A + A +R Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 408 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +S + + +T+S G+A+ + ++ D+ LY AK+ GRNRVV Sbjct: 409 SSISSSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVV 464 >gi|107028918|ref|YP_626013.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] gi|116689924|ref|YP_835547.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] gi|105898082|gb|ABF81040.1| diguanylate cyclase [Burkholderia cenocepacia AU 1054] gi|116648013|gb|ABK08654.1| diguanylate cyclase [Burkholderia cenocepacia HI2424] Length = 466 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S L+EL + ++ ++ D ++G N FI+ + ++ D+D FK Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFK 348 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH +GD+V+ + Q + + R+GGEEF A + A + A +R Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 408 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +S + + +T+S G+A+ + ++ D+ LY AK+ GRNRVV Sbjct: 409 SSISSSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVV 464 >gi|332994949|gb|AEF05004.1| response regulator/GGDEF domain-containing protein [Alteromonas sp. SN2] Length = 418 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 7/175 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFG 147 E S I + + D L+GL N F ++ +KL ++ D+D+FK+IND +G Sbjct: 245 EYIESVEAIRRAANTDYLTGLPNRRHFFYTVTVQYKKLPEQHALALIDLDHFKRINDTYG 304 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V+ +++ L V F + V R GGEEF A N R ++ + Sbjct: 305 HDAGDLVLKAVANLLQVHFNDTL-VARFGGEEFCVYLPKIDIHNAQERLNRFRLALQKTP 363 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 I I S+ +T S G+ + I T++ AD+ LY AK +GRN+V S+ + Sbjct: 364 IQIGE-ESVKVTCSIGLCN-TPTQNIETLLSSADKLLYKAKNAGRNQVHVTSETQ 416 >gi|260769414|ref|ZP_05878347.1| sensory box/GGDEF domain/EAL domain protein [Vibrio furnissii CIP 102972] gi|260614752|gb|EEX39938.1| sensory box/GGDEF domain/EAL domain protein [Vibrio furnissii CIP 102972] Length = 315 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 10/167 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKV 154 +S+L+R D L+ LLN A S N S +VF DID FK +ND+ GH GD V Sbjct: 151 LSRLARQDPLTNLLNRKALHSEFNRINHAKSESLAAMVFIDIDNFKTVNDHLGHKAGDAV 210 Query: 155 IAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + +++ L F P V RLGG+EF Q L + L + + ++ + Sbjct: 211 LVVVAEWL-KQFAPPQSVIARLGGDEFVLLCEQEETQALNTLTDQL--LTQVAEPVVLEN 267 Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I +S G+ E + T+ RAD+A+Y K+SG+N V S Sbjct: 268 GKAQIGLSIGVCEFAPGQHDFDTLYERADEAMYQVKRSGKNGVRWVS 314 >gi|238911908|ref|ZP_04655745.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 664 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 220 AGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 279 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 280 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 339 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 340 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 394 Query: 257 CFS 259 FS Sbjct: 395 VFS 397 >gi|205356975|ref|ZP_03223632.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325110|gb|EDZ12949.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 663 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|295837612|ref|ZP_06824545.1| sensory box protein [Streptomyces sp. SPB74] gi|197696029|gb|EDY42962.1| sensory box protein [Streptomyces sp. SPB74] Length = 206 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +R D L+GL AF +V DID+FK+IND GH VGD ++A ++ + Sbjct: 29 ARRDPLTGLWTRDAFTRRARRLLRDRRAVVVLADIDHFKRINDTHGHAVGDALLASVARR 88 Query: 162 LVVVFGTPMFVGRLGGEEFAAAAL---GSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 L G GRLGG+EFAA L G++ A+L L + E +++ Sbjct: 89 LDHATGADGVCGRLGGDEFAAVLLDRDGTAADLLALLHGVLARPAEGQPAEVAT------ 142 Query: 219 TISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250 T+S G R P +S+++ RAD+A+Y AK++ Sbjct: 143 TVSLGWV-RAADHPGGDLSSLLERADEAMYEAKRA 176 >gi|311105057|ref|YP_003977910.1| diguanylate cyclase [Achromobacter xylosoxidans A8] gi|310759746|gb|ADP15195.1| diguanylate cyclase, GGDEF domain protein 4 [Achromobacter xylosoxidans A8] Length = 478 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 77/158 (48%), Gaps = 7/158 (4%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ +LN S +G + S++ DID+FK IND GH GD+V+ + Sbjct: 320 DPLTNVLNRRFLPSVIGREISIARRQRSEFSVLLLDIDHFKAINDQHGHSGGDQVLRQFA 379 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L + FV R GGEEF + + + A A L I NI +HIT Sbjct: 380 EVLHQACRSSDFVFRYGGEEFLVVLVDAPREAALAAAEKLGAEIRRHVFNIPEAGPLHIT 439 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S G+A + +I RADQALY AK++GR+R V Sbjct: 440 ASIGVATFDGHPDYAYLIDRADQALYQAKQAGRDRAVA 477 >gi|260775313|ref|ZP_05884210.1| pole remodelling regulatory diguanylate cyclase [Vibrio coralliilyticus ATCC BAA-450] gi|260608494|gb|EEX34659.1| pole remodelling regulatory diguanylate cyclase [Vibrio coralliilyticus ATCC BAA-450] Length = 405 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 7/160 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 + + +L+ D L+GL N + + I DID+FK +ND FGH GD + Sbjct: 249 DELYKLANQDTLTGLWNRRFLFNQSCTEGSARYIAMLDIDHFKSVNDTFGHDGGDAALKT 308 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +++ L + F + V R GGEEF + + ++ L +R+ IENS I +G I Sbjct: 309 IANILKIYFPEDVVV-RFGGEEFCVQSYSTLDEFITRLEK-MRQRIENSIIK-HNGQDIT 365 Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 +TIS G+ C E + I AD LY AK+ GRN+++ Sbjct: 366 LTISIGV---CSLEGTLEQQIKLADDCLYTAKEHGRNQII 402 >gi|222836476|gb|EEE74883.1| predicted protein [Populus trichocarpa] Length = 635 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 12/167 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS------SLGSY-NEKLSIVFFDIDYFKQINDNFGH 148 + RI QL+ D L+ L N S ++ S+ S+ +L++VF D+D FKQ+ND+ GH Sbjct: 420 ARRRIRQLAFYDGLTTLPNRSLLLAQAEQALSVASHEGHELAVVFIDLDRFKQVNDSLGH 479 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-ENSQ 207 P GD+++ ++ ++ T GRL G+EF +AA + L+ + E Sbjct: 480 PAGDRLLCSVAQRIQAELRTGDIAGRLSGDEFVIVLPHCGGAQAAEVIERLQSALGEPCM 539 Query: 208 INISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 I+ S+ T S GIA + T+++RAD A+Y AK GR Sbjct: 540 IDDV---SLASTASCGIAVFPADGRDMETLLHRADMAMYQAKSGGRG 583 >gi|319426571|gb|ADV54645.1| bifunctional diguanylate cyclase with GAF and PAS sensory domains/signaling protein with EAL domain protein [Shewanella putrefaciens 200] Length = 747 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 13/164 (7%) Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +A + + S + D+D FKQ+ND +GH GD ++ + Sbjct: 318 DSLTGLANRNALFRQIQTLITSDCLTPGFSFMLMDLDNFKQVNDTYGHDKGDMLLLQVVG 377 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIHI 218 Q+ + + RLGG+EFA G Q+A L+ KII+N + +S ++ Sbjct: 378 QIKTCLDSSIMFARLGGDEFALLLPGVVTQKA--LSQLAEKIIKNVYRRYELSKDKGVYS 435 Query: 219 TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 ++S GIA R ++ ++ ++ ADQA+Y++K +GRNR F++ Sbjct: 436 SVSIGIA-RFPEDALNLEQLLNCADQAMYISKANGRNRYHFFTE 478 >gi|152986044|ref|YP_001350002.1| hypothetical protein PSPA7_4658 [Pseudomonas aeruginosa PA7] gi|150961202|gb|ABR83227.1| hypothetical protein PSPA7_4658 [Pseudomonas aeruginosa PA7] Length = 818 Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 17/177 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+S + D L+GL N F + L N + +++F D+D FK +ND GH G Sbjct: 370 RLSWQATHDALTGLTNRREFEYRLQMALERLERSNGRHALMFLDLDQFKLVNDTCGHAAG 429 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ + L + RLGG+EF ++A +A+ LRK +++ S Sbjct: 430 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWS 489 Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262 P + T+S G+ H P IST+ + AD A Y+AK+ GRNRV F D+E Sbjct: 490 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 542 >gi|89097659|ref|ZP_01170547.1| hypothetical protein B14911_14727 [Bacillus sp. NRRL B-14911] gi|89087518|gb|EAR66631.1| hypothetical protein B14911_14727 [Bacillus sp. NRRL B-14911] Length = 557 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 21/164 (12%) Query: 106 IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA-- 156 ID L+ + N SL Y N+ SI D+D+FKQ+ND +GHP GD++++ Sbjct: 258 IDELTQVYNRRFLKDSLKRYLKELERSNQYFSIAVLDLDHFKQVNDMYGHPAGDRILSEF 317 Query: 157 --FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +L D V G +F R GGEEF +++ ++ + + L +S+ I G Sbjct: 318 AQYLKDH--VRIGDIVF--RYGGEEFILLLPRTNDHDSKEVVSRLLSGF-SSRTFIEGGA 372 Query: 215 SIHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRV 255 + +T SAG+ H +P +T+ I ADQALY AK++GR RV Sbjct: 373 ELKMTFSAGVY-MVH-DPSATVAEAIKTADQALYKAKRNGRARV 414 >gi|88798395|ref|ZP_01113980.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Reinekea sp. MED297] gi|88778835|gb|EAR10025.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Reinekea sp. MED297] Length = 723 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 19/178 (10%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 + ++++L++ D L+GL+N +AF +S + + L+++F D+D FK INDN GH Sbjct: 279 TEEQLARLAQYDALTGLVNRNAFNGLLKKALSRSARHEQPLALLFIDLDQFKTINDNHGH 338 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ 207 +GD ++ ++ +L +GRLGG+EF + ++AA ++ + +E + Sbjct: 339 EIGDSLLQEVAMRLTDCVRNGDIIGRLGGDEFVIMLESLQATKDAARVSQSVLDALE-AP 397 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYR-----ADQALYVAKKSGRNRVVCFSD 260 I G I I S GIA P S + R AD A+Y +K+ GRNR F+D Sbjct: 398 FTI-RGHQIFIGASIGIA----VYPDSALTARELLRCADIAMYRSKEEGRNRYRFFTD 450 >gi|87308440|ref|ZP_01090581.1| hypothetical protein DSM3645_12756 [Blastopirellula marina DSM 3645] gi|87288997|gb|EAQ80890.1| hypothetical protein DSM3645_12756 [Blastopirellula marina DSM 3645] Length = 300 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 27/238 (11%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG---------- 87 F+ V ++A++ + L+ F + +I+ + L S ++L +++ Sbjct: 65 FVVAVCWVASLQTAMV-LSLFCAMAWIIDDTFFLHSTSPGVTLTEVWLTTVHACFFLAIV 123 Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 S++ L +Y R +RID L+GLLN +AF + L++ F D D FK Sbjct: 124 SVIWRLRCAYERERVFARIDSLTGLLNITAFNDTAEREAARCRRSGSPLTVAFIDCDNFK 183 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND GH GD+++ ++ L V RLGG+EFA ++ +A I+ +R Sbjct: 184 QVNDTLGHRTGDRLLKQIARTLCQSVREMDAVARLGGDEFALLLPNANRDQAEIVIKRVR 243 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255 + ++ S + +T S G+A + P +++ ADQ +Y K + ++ V Sbjct: 244 ARLSDAM----STENWPVTFSIGVA--VYHNPDADADALLHGADQLMYDVKHNAKDGV 295 >gi|114320957|ref|YP_742640.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] gi|114227351|gb|ABI57150.1| diguanylate cyclase [Alkalilimnicola ehrlichii MLHE-1] Length = 291 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 24/179 (13%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147 + + + R D L+GL N A +L + LS++ D+D FK IND G Sbjct: 120 VRFQQAEAAGRKDSLTGLQNRQALAEALAREVSLAHRHGHPLSLMVVDLDRFKAINDTHG 179 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--------AAAALGSSEQEAAILANDL 199 H VGD + L+ L V R G+EF AA A+ S ++ A +A + Sbjct: 180 HRVGDTALCRLAALLQENCRGGDLVFRYAGDEFVVLMAHTAAAGAVRSGQRLLARMAQET 239 Query: 200 RKIIE-NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I E + Q+N+ + SAG+AE +E + +RAD AL AK+ GR R+VC Sbjct: 240 LAIGESDDQLNLRA--------SAGVAELEPEEAGEGLFHRADMALLRAKRYGRERLVC 290 >gi|332305841|ref|YP_004433692.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173170|gb|AEE22424.1| diguanylate cyclase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 338 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 81/172 (47%), Gaps = 13/172 (7%) Query: 98 NRISQLSRI-DCLSGLLN-----HSAFISSLGSYNEKLS-IVFFDIDYFKQINDNFGHPV 150 NR +L + D L+GL N H+ + NE+ ++ DID+FK+INDNFGH Sbjct: 171 NRQLRLKTVKDDLTGLFNRAILDHNTIEQINLARNERSDYLLLIDIDHFKKINDNFGHST 230 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ--I 208 GD+++ L D L R GGEEF A +AN +R E ++ + Sbjct: 231 GDEILVILGDILNASMRDSDLAIRWGGEEFLVILQRCPSVHAQKIANQIRIEFEQNERIL 290 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + P+ T+S G A + AD LY AK GRNRVV FSD Sbjct: 291 QLLQRPA---TLSIGTAATSQNLMFDKALSLADSRLYKAKSQGRNRVV-FSD 338 >gi|332535743|ref|ZP_08411489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas haloplanktis ANT/505] gi|332034851|gb|EGI71383.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas haloplanktis ANT/505] Length = 967 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 15/169 (8%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 S ++ QL+ D L+GL N + F ++ G Y ++ +FD+D FK+IND Sbjct: 525 SQRKMEQLAYFDTLTGLANRTFFRMQLRKSMALAERGHY--AFALFYFDLDEFKRINDTL 582 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN 205 GH GD+++ ++++L + RLGG+EFA G S+ AA +AN ++K + N Sbjct: 583 GHDAGDQLLIEVANRLKKRLRAEDTIARLGGDEFAVLLSGIESQSHAADVANTIQKTL-N 641 Query: 206 SQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253 I + S I ++ S GI + ++ AD A+Y AK GRN Sbjct: 642 VPIKLGSNEVI-VSASIGITMAPYDSLEEDQLLKHADLAMYEAKAKGRN 689 >gi|325922053|ref|ZP_08183851.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] gi|325547463|gb|EGD18519.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] Length = 1025 Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 1/122 (0%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK+IND +GH VGD V++ + + L F R GGEEF AA+G +A Sbjct: 903 DIDHFKRINDAYGHEVGDAVLSAIGEALSEHDQAQCFAARHGGEEFLLAAIGLDAAQART 962 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L +R+ + ++ + G ++ T S G+A ++ AD+ LY AK+ GR+R Sbjct: 963 LFERMRQRLATIDVD-AQGTTVRCTASMGMAMSDEAPSRRELLALADRRLYQAKRQGRDR 1021 Query: 255 VV 256 +V Sbjct: 1022 LV 1023 >gi|313108693|ref|ZP_07794689.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|310881191|gb|EFQ39785.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 381 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 22/178 (12%) Query: 100 ISQLSRI----DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148 IS+L R+ D L+GL N +F L + L+++ D+D+FK ND +GH Sbjct: 206 ISRLLRVMADHDSLTGLHNRRSFNQHLDRLWRQAQREQKTLALLLCDVDHFKAYNDRYGH 265 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD V+ + P+ + RLGGEEFA G++E EA + A LR ++ + Sbjct: 266 QAGDAVLQRIGAVFEANARRPLDMAVRLGGEEFALLLYGANEHEARLRAEALRAQVQALR 325 Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYR-------ADQALYVAKKSGRNRVVC 257 + + +S + +T+S G++ C + R AD+ALY AK GRN+VV Sbjct: 326 MEHEASDTAREVTLSVGVS--CLWPTPGNDLKRLYDLYEHADRALYEAKAFGRNQVVA 381 >gi|260768516|ref|ZP_05877450.1| GGDEF family protein [Vibrio furnissii CIP 102972] gi|260616546|gb|EEX41731.1| GGDEF family protein [Vibrio furnissii CIP 102972] Length = 505 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 29/212 (13%) Query: 65 LVENLSLVIISIT-----ISLLLGYISGSILKELFISYNRISQLSRI-------DCLSGL 112 L +N V+I + ISLLLG++S +++E ++ + ++ D L+G+ Sbjct: 298 LTQNDQWVLIGLGAGGTIISLLLGFVSYLLMREKETLNLKLEERTKELRFMVEHDSLTGI 357 Query: 113 LNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GT 168 N AF L Y ++ ++V FDID FK IND + H GD+++ ++ + V G Sbjct: 358 FNRRAFNRILDVYMRDDKVFTLVSFDIDNFKSINDRYSHLAGDQILVAVTKTIEKVLEGN 417 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-----ISSGPSIHITISAG 223 +FV R GG+EF+ + + +R+ +E SQ + IS SI ++ G Sbjct: 418 DIFV-RTGGDEFSILCHVTEREPLMRYLEKIRRTVEQSQFDTGYQLISVSLSIGAAVNHG 476 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E+ ++ RAD LY +K GRN+V Sbjct: 477 YSEQ-------ELLQRADTMLYESKAKGRNQV 501 >gi|289804386|ref|ZP_06535015.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 126 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 17/134 (12%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DID+FK IND +GH GD+ I L+ QL + +GR GG+EFA G+ Sbjct: 2 TLLIIDIDHFKSINDTWGHDAGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPA 61 Query: 190 QEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--YR-----AD 241 ++AI A + ++ E + + + P + + IS G+A P++ I YR AD Sbjct: 62 -DSAITA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGHYREWLKSAD 112 Query: 242 QALYVAKKSGRNRV 255 ALY AK +GRNR Sbjct: 113 MALYKAKNAGRNRT 126 >gi|168235844|ref|ZP_02660902.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734043|ref|YP_002114731.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709545|gb|ACF88766.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290976|gb|EDY30329.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 660 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390 Query: 257 CFS 259 FS Sbjct: 391 VFS 393 >gi|157376803|ref|YP_001475403.1| putative signaling protein [Shewanella sediminis HAW-EB3] gi|157319177|gb|ABV38275.1| conserved hypothetical signaling protein [Shewanella sediminis HAW-EB3] Length = 480 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 10/174 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDN 145 L + +++ LS D L+GL N F L + L++ DID+FK+ ND Sbjct: 305 LETANQKLAALSLTDELTGLGNRRHFNEKLEQEWIRASRTKQPLALGMIDIDFFKKYNDK 364 Query: 146 FGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH +GD+ + +S L ++ R GGEEFA A + E+ A +A ++ + Sbjct: 365 YGHVLGDECLQEISKLLASIISRAGDLSARYGGEEFAFIAPATDEEGARDIAEKFQEALH 424 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVV 256 + + +T S GIA R + +I I AD+ALY+AK+ GRNRVV Sbjct: 425 SLTLPHVESEFGFVTASIGIAVRTPTKGEESICLIKIADEALYLAKEQGRNRVV 478 >gi|254242030|ref|ZP_04935352.1| hypothetical protein PA2G_02756 [Pseudomonas aeruginosa 2192] gi|126195408|gb|EAZ59471.1| hypothetical protein PA2G_02756 [Pseudomonas aeruginosa 2192] Length = 389 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 22/178 (12%) Query: 100 ISQLSRI----DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148 IS+L R+ D L+GL N +F L + L+++ D+D+FK ND +GH Sbjct: 214 ISRLLRVMADHDSLTGLHNRRSFNQHLDRLWRQAQREQKTLALLLCDVDHFKAYNDRYGH 273 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD V+ + P+ + RLGGEEFA G++E EA + A LR ++ + Sbjct: 274 QAGDAVLQRIGAVFEANARRPLDMAVRLGGEEFALLLYGANEHEARLRAEALRAQVQALR 333 Query: 208 I-NISSGPSIHITISAGIAERCHKEPISTIIYR-------ADQALYVAKKSGRNRVVC 257 + + +S + +T+S G++ C + R AD+ALY AK GRN+VV Sbjct: 334 MEHEASDTAREVTLSVGVS--CLWPTPGNDLKRLYDLYEHADRALYEAKAFGRNQVVA 389 >gi|33603636|ref|NP_891196.1| hypothetical protein BB4664 [Bordetella bronchiseptica RB50] gi|33577761|emb|CAE35026.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 380 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 28/226 (12%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI-------- 100 + + L P L + E+ SL I+S+ + L L ++ + + +NR+ Sbjct: 158 LMICVSLGPCTTLPWFTGEH-SLWIVSVQLPLYLASMTVAAYR-----FNRMLVATMQAE 211 Query: 101 ---SQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 +L+R D L+GLLN A ++ NE ++++ D+D FK +ND GH Sbjct: 212 RDSDRLARCDALTGLLNRFGLGFALERAVAATRRDGNE-FALLYLDLDGFKSVNDTHGHA 270 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQI 208 GD+++ ++ +L + + R+GG+EF E A L + + +I E + Sbjct: 271 AGDRLLRDVAARLTELAPADAAIARIGGDEFVLLVRDCDEACATALGDRIVARICEPYDL 330 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I ++ + R H + ++ I+ AD+ALY+AK +G++R Sbjct: 331 GTPRPVRIGGSVGIALVPR-HGQEMTAILKAADRALYLAKSAGKSR 375 >gi|127512396|ref|YP_001093593.1| diguanylate cyclase [Shewanella loihica PV-4] gi|126637691|gb|ABO23334.1| diguanylate cyclase [Shewanella loihica PV-4] Length = 722 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 10/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 ++ L+ D L+ L N + G+ ++ L+ DID+FK+IND +GH +G Sbjct: 544 KLQALAERDELTQLYNRRYVENHFGNIHDMCKRSYAALAFCIIDIDHFKKINDTYGHQIG 603 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D + L++ + F V R GGEEF + + N ++++ QI + Sbjct: 604 DSALIALAELMKQFFKRDTDIVSRYGGEEFLVVLPQCNALQVEQHLNQFKELVAEHQIEV 663 Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +I +T+S G I+ + I AD LY AK++GRNRV+C Sbjct: 664 PGQAAISLTVSIGAVISNAGYMNDIDHWFKMADLNLYEAKENGRNRVIC 712 >gi|315181945|gb|ADT88858.1| sensory box/GGDEF domain/EAL domain protein [Vibrio furnissii NCTC 11218] Length = 315 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 10/167 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKV 154 +S+L+R D L+ LLN A S N S +VF DID FK +ND+ GH GD V Sbjct: 151 LSRLARQDPLTNLLNRKALHSEFNRINHAKSDSLAAMVFIDIDNFKTVNDHLGHKAGDAV 210 Query: 155 IAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + +++ L F P V RLGG+EF Q L + L + + + + +G Sbjct: 211 LVVVAEWL-KQFAPPQSVIARLGGDEFVLLCEQEETQALNTLTDQLLTQVADPVV-LENG 268 Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + I +S G+ E + T+ RAD+A+Y K+SG+N V S Sbjct: 269 KA-QIGLSIGVCEFAPGQHEFDTLYERADEAMYQVKRSGKNGVRWVS 314 >gi|294341431|emb|CAZ89848.1| conserved hypothetical protein; putative PAS/PAC, EAL, GGDEF domains [Thiomonas sp. 3As] Length = 681 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 R+ +R D L+ LN + LG + S + D+D+FK++ND GH G Sbjct: 260 RLHHQARHDALTQALNRVGMLDELGRTHAGFLRTGATFSNILLDLDHFKRVNDQHGHAAG 319 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ + ++ + + R GGEEF +S ++A +A +R ++ ++ Sbjct: 320 DEALRLVARAIQGALRADDHLARWGGEEFLCLLPHTSLEQAIAIAERIRAEVQALELKQG 379 Query: 212 SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRN 253 P I +TISAG+ A + + ++ RAD +LY AK++GRN Sbjct: 380 RQP-IPLTISAGVSAASPDRGDTLEQMLQRADFSLYEAKQAGRN 422 >gi|261820654|ref|YP_003258760.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] gi|261604667|gb|ACX87153.1| diguanylate cyclase [Pectobacterium wasabiae WPP163] Length = 515 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 20/191 (10%) Query: 81 LLGYISGSILKELFISYNRISQ-LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132 L I +I+++ S N Q L+ D L+GL N F +S + ++++++ Sbjct: 323 LKNQIDLTIVRDELTSVNHTLQTLALFDGLTGLANRRQFDIFLQQTLSRVAGTQQRMALI 382 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSS 188 DID FK+ ND++GH GD+ + + V+ P V R GGEEFA + Sbjct: 383 MIDIDAFKKYNDHYGHVAGDECLRKIGH---VLSNMPKRKEDLVARYGGEEFAIIITDTD 439 Query: 189 EQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPI---STIIYRADQA 243 +Q LA + + +I ++ P +TISAG C P+ ++II AD A Sbjct: 440 KQGVITLAQRVLDAVREEKIPHEMTLFPEKIVTISAGAYVFCVDNPLPAATSIIDIADAA 499 Query: 244 LYVAKKSGRNR 254 LY AK G+NR Sbjct: 500 LYRAKNGGKNR 510 >gi|210610102|ref|ZP_03288264.1| hypothetical protein CLONEX_00450 [Clostridium nexile DSM 1787] gi|210152614|gb|EEA83620.1| hypothetical protein CLONEX_00450 [Clostridium nexile DSM 1787] Length = 779 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 19/177 (10%) Query: 99 RISQLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ + + D L+GL N + F+ SL + + D+D FKQIND FGH G Sbjct: 599 RLKERAERDGLTGLYNATTMKMKADNFLQSLWALEGNHIFMLMDLDCFKQINDTFGHQYG 658 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRKIIENS 206 D+V+ +S L F +GR+GG+EFA L S E L +L K E Sbjct: 659 DQVLKDVSQTLTKTFRHNDLIGRMGGDEFAIMILNVSDFSVIEHTVQQLLKELHKSYE-- 716 Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +G ++ ++ S GI H + ++DQ LY K+S +N + + E Sbjct: 717 ----QNGKTVEVSASLGIVTAPEHGTTFEELYQKSDQMLYEVKRSVKNGYRLYQEKE 769 >gi|194292502|ref|YP_002008409.1| response regulator receiver, diguanylate cyclase (ggdef domain) [Cupriavidus taiwanensis LMG 19424] gi|193226406|emb|CAQ72355.1| Response regulator receiver, putative diguanylate cyclase (GGDEF domain) [Cupriavidus taiwanensis LMG 19424] Length = 346 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 19/181 (10%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 ++L + + +L+ D L+GL N F LG+ +++++ D+D FK N Sbjct: 166 QQLLETNLELQRLTNSDGLTGLSNRRYFDEYLGAEWRRALREQTQVALLMIDVDAFKAYN 225 Query: 144 DNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 D +GH GD +V + D V P R GGEEFA +S +LA + Sbjct: 226 DTYGHVAGDDVLRRVATVIRDNCVRATDLP---ARFGGEEFAMVLPATSPGGVRLLAEKV 282 Query: 200 RKIIENSQINISSGPSIH-ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R+ ++ I S P++ +T+S G A R +P S ++ AD LY AK++GRN+V Sbjct: 283 RRAVQGLAIAHSGSPTLDCVTVSIGGAVMVPRPGAQP-SQLVEAADAGLYQAKRNGRNQV 341 Query: 256 V 256 + Sbjct: 342 M 342 >gi|165927306|ref|ZP_02223138.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|166009086|ref|ZP_02229984.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Antiqua str. E1979001] gi|165920768|gb|EDR38016.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165992425|gb|EDR44726.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Antiqua str. E1979001] Length = 338 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 21/242 (8%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85 F+IF + I +++ FL + T + IL++ N+ +I +I + L+ L ++ Sbjct: 84 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 143 Query: 86 ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135 + ++ L + S LS ID L+ L N S L + + ++ D Sbjct: 144 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 203 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK NDN+GH +GD+ + +S + + V R GGEEF SE+ A L Sbjct: 204 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYANQL 263 Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A +R+ + I + S +T+SAGI+ ++ + AD+ALY AK++GRN Sbjct: 264 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 322 Query: 254 RV 255 + Sbjct: 323 NI 324 >gi|117619402|ref|YP_857175.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560809|gb|ABK37757.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 527 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 8/164 (4%) Query: 91 KELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQIND 144 +E+ + R I QL+R D L+GL N + + L + + + ++F D+D FKQ+ND Sbjct: 357 REIALRRQREEEIWQLARRDPLTGLPNRLSLMERLDAQVKGPAPGCLLFCDLDDFKQVND 416 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 NFGH GD ++ L++++ G F RL G+EF G + +A +A +R +++ Sbjct: 417 NFGHSHGDALLCQLAERISRSLGPQHFFARLAGDEFVLLLPGHDQAQADAIAEQIRAVMQ 476 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 S + P + + IS GI++ + +AD+A+Y K Sbjct: 477 -SPFEVEGVP-LTVGISVGISQYQPGWRAEQWLIQADRAMYHDK 518 >gi|160877024|ref|YP_001556340.1| diguanylate cyclase [Shewanella baltica OS195] gi|160862546|gb|ABX51080.1| diguanylate cyclase [Shewanella baltica OS195] gi|315269227|gb|ADT96080.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS678] Length = 328 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 84/170 (49%), Gaps = 9/170 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L + ++ +LS+ D L+ L N + L Y+ S+V DID FK IND Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQECLDHEYDIYARYSGMASLVMIDIDNFKHIND 203 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 ++GH GDKVI ++ L GR GGEEFA +S +A LR+ I Sbjct: 204 SYGHVAGDKVIQHIAHLLSQSLRETDCAGRYGGEEFAVVLPKTSGADAMYFTERLREKIA 263 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 S I + I +T+S G+ E H S+ I +D+ALY AK+ GRN Sbjct: 264 ASVI-LYESLKISVTVSLGVCEIGSHITSSSSWISCSDKALYEAKQKGRN 312 >gi|307721371|ref|YP_003892511.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306979464|gb|ADN09499.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 425 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 3/133 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N+K++I DID FK +ND +GH GD V+ L + V + ++ R GGEEF Sbjct: 285 NKKMTISMIDIDDFKYVNDTYGHQCGDAVLKHLVAKCKSVLRSTDYIFRYGGEEFIILLN 344 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQA 243 ++ A + LR+ +ENS I +G I ITIS GI + K I+ II +ADQ Sbjct: 345 AANFTNAVEIYEKLRQKVENSYIE-CNGNKISITISIGIESVDSSKKINIAKIIKQADQH 403 Query: 244 LYVAKKSGRNRVV 256 LY AK +G+N ++ Sbjct: 404 LYTAKNNGKNMII 416 >gi|163782883|ref|ZP_02177879.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Hydrogenivirga sp. 128-5-R1-1] gi|159882004|gb|EDP75512.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Hydrogenivirga sp. 128-5-R1-1] Length = 711 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 8/164 (4%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L E+ +++ D+D FK IND +GH GDK + + Sbjct: 301 DPLTGLYNQRVFWELLEYEIERAQRRGYSFAVLMIDLDNFKVINDTYGHDFGDKFLREFA 360 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + F V R GG+EF +SE+EA A + ++N + G I T Sbjct: 361 KLMRKTFRREDIVARYGGDEFVVILPYASEEEALRSARRFIEELDNFYVEAPDGKPIKAT 420 Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +S GIA H E + AD +Y AK G++RV+ +D + Sbjct: 421 VSIGIALYPQHGESTQELFLTADNIMYRAKAEGKSRVMLPTDTD 464 >gi|126172780|ref|YP_001048929.1| diguanylate cyclase [Shewanella baltica OS155] gi|217974887|ref|YP_002359638.1| diguanylate cyclase [Shewanella baltica OS223] gi|304410888|ref|ZP_07392505.1| diguanylate cyclase [Shewanella baltica OS183] gi|307304941|ref|ZP_07584691.1| diguanylate cyclase [Shewanella baltica BA175] gi|125995985|gb|ABN60060.1| diguanylate cyclase [Shewanella baltica OS155] gi|217500022|gb|ACK48215.1| diguanylate cyclase [Shewanella baltica OS223] gi|304350785|gb|EFM15186.1| diguanylate cyclase [Shewanella baltica OS183] gi|306912343|gb|EFN42767.1| diguanylate cyclase [Shewanella baltica BA175] Length = 328 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 84/170 (49%), Gaps = 9/170 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L + ++ +LS+ D L+ L N + L Y+ S+V DID FK IND Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQECLDHEYDIYARYSGMASLVMIDIDNFKHIND 203 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 ++GH GDKVI ++ L GR GGEEFA +S +A LR+ I Sbjct: 204 SYGHVAGDKVIQHIAHLLSQSLRETDCAGRYGGEEFAVVLPKTSGADAMYFTERLREKIA 263 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 S I + I +T+S G+ E H S+ I +D+ALY AK+ GRN Sbjct: 264 ASVI-LYESLKISVTVSLGVCEIGSHITSSSSWISCSDKALYEAKQKGRN 312 >gi|326627689|gb|EGE34032.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 663 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|323212725|gb|EFZ97540.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 524 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 80 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 139 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 140 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 199 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 200 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 254 Query: 257 CFS 259 FS Sbjct: 255 VFS 257 >gi|320637245|gb|EFX07071.1| hypothetical protein ECO5101_20565 [Escherichia coli O157:H7 str. G5101] Length = 430 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPSQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P T Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--T 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|319784352|ref|YP_004143828.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170240|gb|ADV13778.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 262 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 28/235 (11%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSIL-------K 91 + T FIA F P+ E + ++ + + L+LG GS L + Sbjct: 19 VGTAFFIAVAFFVDSFNFPYLSPEAVWRAQMT----DLMLPLVLG---GSFLFFLMWKIR 71 Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQI 142 +L I+ +S ++ D L+ +LN AF + +Y E+ +++ D D+FK I Sbjct: 72 QLAIAQRDLSVIAATDSLTAVLNRGAFSMLVEAYLEQTRKQEQTRSGALLIIDADHFKSI 131 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GD+ + ++ + VGR+GGEEF G ++ ++A +R+ Sbjct: 132 NDRLGHDCGDQALKLIAQAIKGQLRGSDIVGRIGGEEFGVFLPGVDPSQSWVVAESIRRR 191 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 I + + P +S I PI+ I AD+ LY AK +GR++V Sbjct: 192 IREMEFSPGGRP---CPLSVSIGGTSFTGPITYEEIFSAADRRLYTAKSNGRDQV 243 >gi|315125666|ref|YP_004067669.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas sp. SM9913] gi|315014180|gb|ADT67518.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas sp. SM9913] Length = 564 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 8/173 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 +ELF + + + +D L+G LN L N +S++ DID+FK IN Sbjct: 392 QELFTLNKELEKQANVDPLTGCLNRRTLYRFLTDELLKTQDGNTYISLLMLDIDHFKAIN 451 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 DN+GH GDK + L++ L + V RLGGEEF +++ EA A ++ + Sbjct: 452 DNYGHEAGDKGLKELANILHGLTRKNDAVFRLGGEEFLIIMPNTNKAEAKQAAERIKNAV 511 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ +I T+S G+ + + + D LY AK SGRN++V Sbjct: 512 NEHKV-YYRNKNISFTVSIGLLTHDGTISLQSSLKYVDDYLYEAKNSGRNKIV 563 >gi|239993375|ref|ZP_04713899.1| diguanylate cyclase [Alteromonas macleodii ATCC 27126] Length = 358 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 77/279 (27%), Positives = 129/279 (46%), Gaps = 36/279 (12%) Query: 4 SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIF----IANI-----FLFYIG 54 S ++ IW+C E++ F P+ I ++ FF +F + F AN+ FL + Sbjct: 82 SYSNYWLIWVCWEEHSFIF-PYEGTILYA-FFCVFALGIAFKLALAANVINILGFLGLMW 139 Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 + P YG + +++ V S+ I + Y ++ L + +R+ +LS+ D LS LLN Sbjct: 140 VAPVYGDRVPI--SMAFVSGSLFICVYARYRLDRSVRMLKETNDRLLKLSKFDPLSDLLN 197 Query: 115 HSAFISSLGSYNEKL-----------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 A L +EKL +++ D+D FK+ ND FGH GD+ I + + Sbjct: 198 RRA----LREQSEKLLALSKRHKVSMAVMMLDLDDFKKYNDCFGHQQGDEAIKIQARIMK 253 Query: 164 VVFGTPM-FVGRLGGEEFAAAALGSSEQEA-----AILANDLRKIIENSQINISSGPSIH 217 VF +GR GGEEF +++ A+L +E++Q + P + Sbjct: 254 QVFKRETDILGRYGGEEFIVVLSDIQKEQVEKHCDALLNKWTEAALEHAQ--DAKHPLMS 311 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I A+ I +I AD+ALY AK+ G+ + V Sbjct: 312 CSIGVVFAKSAENMSIDCLIDEADKALYEAKEKGKAQFV 350 >gi|207856783|ref|YP_002243434.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708586|emb|CAR32907.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 660 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 390 Query: 257 CFS 259 FS Sbjct: 391 VFS 393 >gi|197265009|ref|ZP_03165083.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205358003|ref|ZP_03223901.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197243264|gb|EDY25884.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328272|gb|EDZ15036.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|321224330|gb|EFX49393.1| hypothetical protein SEE_02786 [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129972|gb|ADX17402.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 663 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|16765047|ref|NP_460662.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16420232|gb|AAL20621.1| putative PAS/PAC domain protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261246894|emb|CBG24711.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993641|gb|ACY88526.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158230|emb|CBW17729.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912693|dbj|BAJ36667.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|332988590|gb|AEF07573.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 660 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390 Query: 257 CFS 259 FS Sbjct: 391 VFS 393 >gi|115523502|ref|YP_780413.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] gi|115517449|gb|ABJ05433.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] Length = 830 Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 26/200 (13%) Query: 72 VIISITISLLLGYISGSILKELFISYNR----ISQLSRIDCLSGLLNHSAF-------IS 120 ++ S+ +L L +++ S L+E R ++QL+ +D ++G+ N ++F + Sbjct: 349 MLASLKRTLKLEFLTAS-LRETGDQLQRESALVAQLASLDSMTGIANRASFHARLAAAFA 407 Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 + + +++ D+D+FK +ND GHP+GD+++ + +L V + RLGG+EF Sbjct: 408 AAQRADGHFAVLCLDLDHFKDVNDTLGHPIGDRLLQIAAQRLTRVVSHDDVIARLGGDEF 467 Query: 181 AAAALGSSEQE-----AAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPI 233 A ++E A +AN L + E G + +T S GI+ P Sbjct: 468 ALLIFDVCDREVIAGIATRIANALNESYE------LDGNIVRVTASIGISVFGPAAASPE 521 Query: 234 STIIYRADQALYVAKKSGRN 253 +I+ ADQALY AK GRN Sbjct: 522 DMMIH-ADQALYRAKADGRN 540 >gi|313202429|ref|YP_004041087.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312441745|gb|ADQ85851.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] Length = 771 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 17/231 (7%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIIS-ITISLLLGYISGSILKELFIS 96 +A +I I+ I+ + T L LS++ ++ + S+LL + E I Sbjct: 265 LMAMLIAISTIYFMMMDTTTPIAKSIALGSCLSIIALAMVRQSILLAESERLLTAEQLIE 324 Query: 97 YN--RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 R L+ D L+GL N F L N ++ ++F DID+FK IND+ G Sbjct: 325 EGQMRYQHLAHHDILTGLPNRLLFQDRLTHALALSARNNNRVGMLFIDIDHFKNINDSLG 384 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIEN 205 H +GD+++ + ++L + RLGG+EF L ++ + A I +N L + Sbjct: 385 HVIGDELLVAIVERLKLRIREQDTFARLGGDEFVLLIEQLQNASEAATIASNLLEAL--K 442 Query: 206 SQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254 + ++S + I+ S GI+ C + + + +I AD A+Y AK +GRNR Sbjct: 443 TPFHLSGNCEVVISASIGISV-CPEDTQDATQLIRNADSAMYRAKDTGRNR 492 >gi|304385737|ref|ZP_07368081.1| signal transduction diguanylate cyclase [Pediococcus acidilactici DSM 20284] gi|304328241|gb|EFL95463.1| signal transduction diguanylate cyclase [Pediococcus acidilactici DSM 20284] Length = 400 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 13/214 (6%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF- 118 G+ + V + L+ + + + + ++ + Y ++ + + D L+G+ N F Sbjct: 184 GIRTMTVSQVLLLTFEFMMMMTIVHFGNIEIRAMVKRYMKLEKDNGYDFLTGVRNRRTFN 243 Query: 119 -----ISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL----SDQLVVVFGT 168 + + S N+ +++V FDID+FK ND +GH VGD V+ ++ SD+L T Sbjct: 244 EVVNEVFEVYSNNDLPVAMVMFDIDHFKLFNDQYGHQVGDNVLKYVAQLFSDELFER-KT 302 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 + R+GGEEF + EAA + +R I+ + ++ +T+S G+ + Sbjct: 303 NAQLFRVGGEEFTIIFRNRTSAEAAPIVKTIRDILVEKTFEVKDDLNVRVTVSIGVTDLK 362 Query: 229 HKEPISTIIY-RADQALYVAKKSGRNRVVCFSDI 261 + + Y R D+ LY AK + RN + D+ Sbjct: 363 KSDQSAKDFYKRVDKYLYQAKNNFRNSMSVEGDV 396 >gi|194471677|ref|ZP_03077661.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358293|ref|ZP_03223993.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194458041|gb|EDX46880.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335392|gb|EDZ22156.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 663 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|120611687|ref|YP_971365.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gi|120590151|gb|ABM33591.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 260 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 9/165 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+GL N F I + E ++ DID FK++ND GH GD Sbjct: 54 LCELSLKDPLTGLANRRHFRTVLEREIDRVTRAGEAALLLMLDIDNFKRVNDTHGHMAGD 113 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L + R GGEEFA ++A +R+ +E + + IS Sbjct: 114 IVLQSIARTLSRCVRPMDTLSRYGGEEFAVVLPACQAGFGKVVAERIRRAVERTPVRISP 173 Query: 213 GPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRV 255 +++T+S G A +T+++ RAD LY AK +GRNRV Sbjct: 174 TVELNVTVSIGGAFALQWIRSTTLLWTERADSQLYKAKLAGRNRV 218 >gi|170733262|ref|YP_001765209.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] gi|169816504|gb|ACA91087.1| diguanylate cyclase [Burkholderia cenocepacia MC0-3] Length = 466 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S L+EL + ++ ++ D ++G N FI+ + ++ D+D FK Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFK 348 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH +GD+V+ + Q + + R+GGEEF A + A + A +R Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 408 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +S + + +T+S G+A+ + ++ D+ LY AK+ GRNRVV Sbjct: 409 SSISSSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVV 464 >gi|117927307|ref|YP_871858.1| diguanylate cyclase [Acidothermus cellulolyticus 11B] gi|117647770|gb|ABK51872.1| diguanylate cyclase [Acidothermus cellulolyticus 11B] Length = 555 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 6/170 (3%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 EL R+ + D L+GL N A + +L + S++F D+D FK ND+F H Sbjct: 387 ELAAENERVEHEALRDALTGLANRRALDMALEALAKSDTVSSLLFVDLDDFKTTNDSFSH 446 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQ 207 VGD+V+ ++ L V R GG+EF G+ + + +R ++ S Sbjct: 447 TVGDEVLRSIAAILRGECREDDVVARFGGDEFVLVLHGAPRKTGIRVGERIRSAVKAFSW 506 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I+ P + +++S G+AE +S + AD ALY AK+ GR+RV Sbjct: 507 EKIA--PDLRVSVSIGVAEFQPGMDLSEALLTADSALYAAKQQGRDRVAA 554 >gi|115351942|ref|YP_773781.1| diguanylate cyclase [Burkholderia ambifaria AMMD] gi|115281930|gb|ABI87447.1| diguanylate cyclase [Burkholderia ambifaria AMMD] Length = 466 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S L+EL + ++ ++ D ++G N FI + ++ D+D FK Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIGQVEREIVRAERDGTPFCLLALDLDNFK 348 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH +GD+V+ + Q + + R+GGEEF A + A + A +R Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 408 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I +S + + +T+S G+A+ + ++ D+ LY AK+ GRNRVV Sbjct: 409 SSIASSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKRDGRNRVVA 465 >gi|22127627|ref|NP_671050.1| HmsT protein [Yersinia pestis KIM 10] gi|108809850|ref|YP_653766.1| HmsT protein [Yersinia pestis Antiqua] gi|108810461|ref|YP_646228.1| HmsT protein [Yersinia pestis Nepal516] gi|150260535|ref|ZP_01917263.1| predicted diguanylate cyclase [Yersinia pestis CA88-4125] gi|165936531|ref|ZP_02225099.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166212091|ref|ZP_02238126.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167400664|ref|ZP_02306173.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418700|ref|ZP_02310453.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426093|ref|ZP_02317846.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467770|ref|ZP_02332474.1| HmsT protein [Yersinia pestis FV-1] gi|218927626|ref|YP_002345501.1| HmsT protein [Yersinia pestis CO92] gi|229840307|ref|ZP_04460466.1| predicted diguanylate cyclase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842386|ref|ZP_04462541.1| predicted diguanylate cyclase [Yersinia pestis biovar Orientalis str. India 195] gi|229900648|ref|ZP_04515772.1| predicted diguanylate cyclase [Yersinia pestis Nepal516] gi|270487991|ref|ZP_06205065.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM D27] gi|294502523|ref|YP_003566585.1| HmsT protein [Yersinia pestis Z176003] gi|4583441|gb|AAD25088.1|AF129277_1 HmsT [Yersinia pestis] gi|5758037|gb|AAD50642.1|AF132982_1 HmsT [Yersinia pestis] gi|21960739|gb|AAM87301.1|AE013979_1 hemin storage system protein [Yersinia pestis KIM 10] gi|108774109|gb|ABG16628.1| HmsT protein [Yersinia pestis Nepal516] gi|108781763|gb|ABG15821.1| HmsT protein [Yersinia pestis Antiqua] gi|115346237|emb|CAL19106.1| HmsT protein [Yersinia pestis CO92] gi|149289943|gb|EDM40020.1| predicted diguanylate cyclase [Yersinia pestis CA88-4125] gi|165915647|gb|EDR34256.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Orientalis str. IP275] gi|166206837|gb|EDR51317.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962694|gb|EDR58715.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050032|gb|EDR61440.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055016|gb|EDR64816.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681987|gb|EEO78079.1| predicted diguanylate cyclase [Yersinia pestis Nepal516] gi|229690696|gb|EEO82750.1| predicted diguanylate cyclase [Yersinia pestis biovar Orientalis str. India 195] gi|229696673|gb|EEO86720.1| predicted diguanylate cyclase [Yersinia pestis biovar Orientalis str. PEXU2] gi|262360553|gb|ACY57274.1| HmsT protein [Yersinia pestis D106004] gi|262364500|gb|ACY61057.1| HmsT protein [Yersinia pestis D182038] gi|270336495|gb|EFA47272.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM D27] gi|294352982|gb|ADE63323.1| HmsT protein [Yersinia pestis Z176003] gi|320017013|gb|ADW00585.1| putative diguanylate cyclase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 390 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 21/247 (8%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVE---NLSLVIISITISLL---LGYI-- 85 F+IF + I +++ FL + T + IL++ N+ +I +I + L+ L ++ Sbjct: 136 LFTIFFISTIALSDNFLAFCLHTAPSAITVILLDDFHNIFRIIFTIMLPLIGFSLHHLML 195 Query: 86 ------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----IVFFD 135 + ++ L + S LS ID L+ L N S L + + ++ D Sbjct: 196 RRTDNFTRKLVDHLSNEREKFSDLSMIDPLTSLYNRRGLESKLETLLSQSPGNHYVLLLD 255 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 ID+FK NDN+GH +GD+ + +S + + V R GGEEF SE+ A L Sbjct: 256 IDHFKAYNDNYGHTMGDQALVRISAAIRDAVRSRDIVVRYGGEEFLVLLTHVSEEYANQL 315 Query: 196 ANDLRKIIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 A +R+ + I + S +T+SAGI+ ++ + AD+ALY AK++GRN Sbjct: 316 AERVRQRVLGLDIPHVFNHKVSTTVTLSAGISP-LQAYDLAASLKAADEALYRAKRNGRN 374 Query: 254 RVVCFSD 260 + D Sbjct: 375 NIEFAKD 381 >gi|89092412|ref|ZP_01165366.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) withPAS/PAC sensor [Oceanospirillum sp. MED92] gi|89083500|gb|EAR62718.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) withPAS/PAC sensor [Oceanospirillum sp. MED92] Length = 1010 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 14/177 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL--GSYN-----EKLSIVFFDIDYFKQINDNFGHPV 150 ++ ++ D L+GL N I L G N + L++ + D+D FK IND +GH Sbjct: 562 KKLELIANFDPLTGLPNRRHIIELLHEGMANAMKQMKTLAVFYLDLDGFKDINDTYGHEY 621 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ L++++ G VGR+GG+EF A E+ ++ + L I+E I Sbjct: 622 GDQLLVTLANRMSKAMGQQDIVGRVGGDEFIGAFF---EEPNSVFTDKLHHILEQLAKPI 678 Query: 211 -SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G + ++ S G+ + ++ ADQA+Y AK +G+NR F D E + Sbjct: 679 FVEGYKLQVSASIGVTLYPQQRSTDADKLVREADQAMYQAKLAGKNRYHFF-DAEKD 734 >gi|225849118|ref|YP_002729282.1| ggdef domain protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225644419|gb|ACN99469.1| ggdef domain protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 826 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 101 SQLSRIDCLSGLLNHSA----FISSLGS-----YNEKLSIVFFDIDYFKQINDNFGHPVG 151 +LS D L+ L N F +G YN + ++ D+D FK++ND +GH VG Sbjct: 662 KELSLKDSLTNLYNRRYIIEFFTKEIGKAKRLDYN--IGVLVIDVDNFKKLNDTYGHLVG 719 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + +S+ + VGR GGEEF GS E+ +A +RK + + I Sbjct: 720 DLCLKKVSNVFLNSVREMDIVGRWGGEEFIVILPGSDEESTYQIAERIRKKVSSEVIFTP 779 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 ++IT+S G+A + + +I AD+ LY AKKSG+N Sbjct: 780 DNKILNITVSIGMAVYPKDGDNLDDLIKVADEKLYQAKKSGKN 822 >gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 799 Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 8/163 (4%) Query: 106 IDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID ++GL + S I + E V D+D+F+QIN+ +G+P+GD+V+ L Sbjct: 627 IDSITGLASRSKSIHDISRMLRLAKRQGEHCCFVLLDVDHFQQINEQYGYPMGDEVLRRL 686 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L F V R GGEEF S + ND +I S + + Sbjct: 687 GELLKQTFRNEDIVARWGGEEFVLGLYNLSLEGGMKRINDFLEIWSQEIFITSLEHTFQV 746 Query: 219 TISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 T+SAGIAE + + T+ A +ALY AK S +RV+ + Sbjct: 747 TLSAGIAEYPSDGQTLQTLYQSAQKALYQAKTSQGDRVLTIQE 789 >gi|160937062|ref|ZP_02084425.1| hypothetical protein CLOBOL_01951 [Clostridium bolteae ATCC BAA-613] gi|158439963|gb|EDP17711.1| hypothetical protein CLOBOL_01951 [Clostridium bolteae ATCC BAA-613] Length = 319 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 15/164 (9%) Query: 105 RIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 R D L+GLLN F + + + + + DID+FK+IND +GHP+GDK + S+ Sbjct: 156 RHDSLTGLLNRLYFKETCERFQADGDNGAFLMMDIDWFKKINDQYGHPIGDKTLISFSES 215 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALG---SSEQEAAILANDLRKIIENSQINISSGPSIH- 217 L V R+GG+EF G E E L+ L E Q + IH Sbjct: 216 LKSVISPASLAARMGGDEFTLYLSGIRQRGEVEDFFLS--LMTDWEERQKAL----HIHD 269 Query: 218 -ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ISAG+A + + ++ +ADQALY+AKK N ++ + Sbjct: 270 QVSISAGVAFTSNADTSYEALLAQADQALYLAKKKKNNELIHWE 313 >gi|91793664|ref|YP_563315.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91715666|gb|ABE55592.1| diguanylate cyclase [Shewanella denitrificans OS217] Length = 341 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 10/161 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+ +LN AF + + + + +V DID+FK NDN+GH +GD V+ ++ ++ Sbjct: 182 DALTNVLNRRAFDEDIRAIVAQKTAGNCLVLLDIDHFKAFNDNYGHQLGDMVLKTVAKRV 241 Query: 163 V--VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--HI 218 GT ++ R GGEEFA S + A LA+ LR+ IE + + I Sbjct: 242 QEGCRDGTKLY--RFGGEEFAIIIPKSQLRVARQLADGLRRAIEKLTLKDRRNDTKIDAI 299 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 T S G++E + ++ I D+ LY AK GRNRV+ S Sbjct: 300 TASFGVSEWQPGQSVAEFIEATDKLLYQAKHLGRNRVMPMS 340 >gi|288957149|ref|YP_003447490.1| GGDEF-domain-containing signaling protein [Azospirillum sp. B510] gi|288909457|dbj|BAI70946.1| GGDEF-domain-containing signaling protein [Azospirillum sp. B510] Length = 1021 Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 21/180 (11%) Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPV 150 + L+ D L+GL N + L + N+ L+++F D+D FK IND FGH Sbjct: 560 LDHLAHFDPLTGLPNRLTLEQHVDRLIADNKASGNAAPLALLFLDMDNFKFINDGFGHKS 619 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ L ++ G +F+ RLGG+EF G +E +A + + + + + Sbjct: 620 GDELLMMLGLRIRKGAGDGVFLARLGGDEFVVVVQGGDAEEPVEVARRVEQAM--AAPFL 677 Query: 211 SSGPSIHITISAGIAE-----RCHKEPISTIIYRADQALYVAKKSGRNRVVCF-SDIENN 264 G ++ S GIA RC + ++ AD A+Y AK SGR R+ F SD+ N Sbjct: 678 VEGQHFFVSCSVGIARYPWDGRCFDD----LLQNADTAMYRAKDSGRGRICTFTSDMNRN 733 >gi|261210896|ref|ZP_05925186.1| GGDEF family protein [Vibrio sp. RC341] gi|260839871|gb|EEX66471.1| GGDEF family protein [Vibrio sp. RC341] Length = 527 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 15/190 (7%) Query: 78 ISLLLGYISGSILKE----LFISYNRISQLSRI---DCLSGLLNHSAFISSLGSY---NE 127 IS LL YI L+E + +R ++L + D L+G+ N F L + Sbjct: 317 ISFLLSYIMRMQLEEQQHLTAMIEDRTAELRYLAEHDSLTGIYNRRYFSRQLCRMLDEAQ 376 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALG 186 +++ FD+D+FK+IND +GH GD + + + ++ + FV RLGG+EFA + Sbjct: 377 AFTLISFDVDHFKEINDTYGHLAGDHALQHVVHTVQKILMESDTFV-RLGGDEFAILSSL 435 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALY 245 + E +R+ +E+S +S + +TIS G + C + EP I+ D LY Sbjct: 436 TERNELVEYLEGIRQSVEHSPFIVSDELQLALTISIGASTNCQYTEP--EILQSVDNQLY 493 Query: 246 VAKKSGRNRV 255 +K GRNRV Sbjct: 494 ESKSRGRNRV 503 >gi|205352622|ref|YP_002226423.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272403|emb|CAR37283.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 660 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 390 Query: 257 CFS 259 FS Sbjct: 391 VFS 393 >gi|126665383|ref|ZP_01736365.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17] gi|126630011|gb|EBA00627.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17] Length = 911 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 10/179 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 E Y+ +++L L L + ++ NE+L+++F D+D FKQ+ND GH VG Sbjct: 735 ESMAKYDALTELPNRVLLGDRLTQAMRLAE--RNNERLALLFIDLDGFKQVNDTLGHGVG 792 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209 D ++ ++ ++ R GG+EF +G E+ ++++ L I E + Sbjct: 793 DDLLKKITWRVAQELRGSDTFSRFGGDEFVVVLPEIGKMERAESVVSRILLAIAEKVTL- 851 Query: 210 ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 + I IT S G+ E + ++ +ADQA+YVAK+ GRN+ F D EN+ Sbjct: 852 --AEKEIFITASIGVTFYPQSETLDADQLLRQADQAMYVAKQKGRNQFQYF-DTENDKA 907 >gi|320353672|ref|YP_004195011.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032] gi|320122174|gb|ADW17720.1| diguanylate cyclase [Desulfobulbus propionicus DSM 2032] Length = 332 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 10/169 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147 I Y I +R D L+GL N F +G+ E+ L++ D+D+FK +ND G Sbjct: 165 IEYEEIFAQARKDSLTGLPNRFVFEERIGAIVEQANRHGRPLTLAALDLDHFKAVNDTMG 224 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD+V+ +++ L + R+GG+EF ++ ++A LA L + +E Sbjct: 225 HLMGDQVLKQVAEVLQRQIRLSDLLVRMGGDEFLLVLPDTAMEDARFLAERLCQAVEELN 284 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +G + +S G++E + + RAD LY AK +GR +V Sbjct: 285 IVTQAG---RLAVSIGLSEWKSGMQLDAWLERADDILYQAKANGRAQVA 330 >gi|313894742|ref|ZP_07828303.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312976651|gb|EFR42105.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 573 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 18/160 (11%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 YNR+ D S L N F K S FD+D+FK +ND GH GD V+ Sbjct: 422 YNRLQLQKSFDAFSALANERGF---------KFSFAIFDVDHFKSVNDTKGHLEGDNVLK 472 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + R GG+EF AL + A DLR+ +E + Sbjct: 473 KIARTVHDEIDRRHVFIRYGGDEFILLALHYDLETMAAFCEDLRRKLEVALAG------- 525 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G++ +K+ + +I RAD+ALYV+K+ GRN V Sbjct: 526 -VTMSFGVSTWHGNKDRLRALIDRADRALYVSKEKGRNAV 564 >gi|253999197|ref|YP_003051260.1| PAS/PAC sensor-containing diguanylate cyclase [Methylovorus sp. SIP3-4] gi|253985876|gb|ACT50733.1| diguanylate cyclase with PAS/PAC sensor [Methylovorus sp. SIP3-4] Length = 503 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 17/175 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N F L KL+++F D+D FK++ND+FGH +GD Sbjct: 330 LNKLAYYDALTGLPNRLLFEDRLHQGMFACKRQGSKLAVLFVDLDKFKEVNDSFGHHIGD 389 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILAN---DLRKIIENSQ 207 ++ ++ +L V RLGG+EF ++ S E I+ N LR Sbjct: 390 LLLKEIARRLRSQLREEDTVSRLGGDEFVILLNSINSVEDSEKIVRNLLAALRAPFTTES 449 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + + SI I I H + +TI+ +ADQA+Y+AK+ + FS+I+ Sbjct: 450 VTLYQEASIGICIYPD-----HAQDEATIVNKADQAMYIAKRDSQRHYAFFSEID 499 >gi|322614960|gb|EFY11885.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619400|gb|EFY16280.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623212|gb|EFY20054.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628502|gb|EFY25290.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322638526|gb|EFY35221.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322645332|gb|EFY41860.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651785|gb|EFY48157.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654318|gb|EFY50640.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659284|gb|EFY55532.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662715|gb|EFY58922.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667674|gb|EFY63834.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671912|gb|EFY68033.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677042|gb|EFY73106.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680296|gb|EFY76335.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685275|gb|EFY81271.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196175|gb|EFZ81334.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199334|gb|EFZ84428.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204792|gb|EFZ89788.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205912|gb|EFZ90875.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217239|gb|EGA01960.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220168|gb|EGA04631.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225578|gb|EGA09806.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232101|gb|EGA16208.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234628|gb|EGA18715.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238080|gb|EGA22139.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243317|gb|EGA27336.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248427|gb|EGA32362.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252533|gb|EGA36376.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255442|gb|EGA39208.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260844|gb|EGA44446.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267569|gb|EGA51052.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271001|gb|EGA54432.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 660 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390 Query: 257 CFS 259 FS Sbjct: 391 VFS 393 >gi|194451806|ref|YP_002045745.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|198242265|ref|YP_002215442.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205358994|ref|ZP_03224186.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194410110|gb|ACF70329.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197936781|gb|ACH74114.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205339461|gb|EDZ26225.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|326623189|gb|EGE29534.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 663 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|157960576|ref|YP_001500610.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] gi|157845576|gb|ABV86075.1| diguanylate cyclase [Shewanella pealeana ATCC 700345] Length = 375 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 12/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 K+L + R L+ ID L+ + N F I + + LSI+ D+D+FK +N Sbjct: 198 KKLLQQFKR---LALIDGLTNISNRRHFDDVLTQEIKASLRTLQPLSIIMVDVDFFKPLN 254 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D+ GH VGDK + ++ L P V R GGEEF A + A +A ++ Sbjct: 255 DSLGHQVGDKHLTKIAAVLNSALERPRDLVARYGGEEFVIALPDTDLSGAIRVAEKIKLA 314 Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I ++++ + SS S ++T+S G+A+ + ++ D+ LY AK SGR+R Sbjct: 315 ISDAELHHPSSKVSGYVTVSQGVAQWQEGMVPAQLLEMTDKLLYQAKSSGRDR 367 >gi|16124908|ref|NP_419472.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15] gi|13421870|gb|AAK22640.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15] Length = 694 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 19/173 (10%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+GL N + F +S+ + E ++ D+D+FK IND GH GD Sbjct: 266 IETLAFKDPLTGLPNRTLFQHRFQEAVSASETLGEMFGLIMIDVDHFKDINDTLGHDAGD 325 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AALGSSEQEAAI--LANDLRKIIENSQ 207 ++ L+ L F T V RLGG+EFA G ++ I L + LR+ I++ Sbjct: 326 ALLKRLAGMLQHAFRTGDTVARLGGDEFAVILRGLHGEADMTRPIEALQDLLRRPIQHGG 385 Query: 208 INISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + ++ SI + + A+ H +I AD ALY AK++GRNR + F Sbjct: 386 RSFTASASIGAALHGDLDADPAH------MIKNADIALYRAKEAGRNRSIVFE 432 >gi|297579665|ref|ZP_06941592.1| GGDEF family protein [Vibrio cholerae RC385] gi|297535311|gb|EFH74145.1| GGDEF family protein [Vibrio cholerae RC385] Length = 359 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 19/164 (11%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G LN L NE I DID+FK +ND +GH GDKVI Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237 Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 Q+V + T + RLGG+EF +S A ++ + + I+ + Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTNATLVMSHIGCRIQQTHYPCH 293 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+AE + RADQALY +KK G+NRV Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRADQALYHSKKMGKNRV 333 >gi|262373724|ref|ZP_06067002.1| GGDEF domain-containing protein [Acinetobacter junii SH205] gi|262311477|gb|EEY92563.1| GGDEF domain-containing protein [Acinetobacter junii SH205] Length = 573 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 9/175 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNE---KLSIVFFDIDYFKQ 141 ++LK+ + +++ +++ D L+G+ N A +I L S K ++ DID FK Sbjct: 399 AMLKQRDMMESQLKKIANSDVLTGVANRLALDEYIRVLESRPNAFSKTGVIVIDIDNFKL 458 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND +GH VGD+VI ++DQL + R GG+EF A +A +R Sbjct: 459 VNDQYGHIVGDQVITMIADQLKHNVRASDLIVRYGGDEFLVVIENIQLDAAKHIAESIRT 518 Query: 202 IIENSQINISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I + I +SS G SI +++S G+A E ++ ADQ++ AK G+N V Sbjct: 519 EIASQFIEVSSLGESIQVSVSIGVA--VGAESWLELLENADQSMLRAKAKGKNVV 571 >gi|238917494|ref|YP_002931011.1| hypothetical protein EUBELI_01572 [Eubacterium eligens ATCC 27750] gi|238872854|gb|ACR72564.1| Hypothetical protein EUBELI_01572 [Eubacterium eligens ATCC 27750] Length = 600 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 17/209 (8%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELF-ISYNRISQL---SRIDCLSGLLNHSAFIS 120 ++E L + +T S + G ++ E SYN+IS + + D L+ + N + Sbjct: 216 VMETLRFIGTVMTKSDGRKIVVGRVIPEADNRSYNQISDMIEELQFDSLTHVYNKKTITA 275 Query: 121 SL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 N +++I D+D+FK++ND +GH GDK++A + +L V G VGR+ Sbjct: 276 YAVKCLKEEKNNRVTIAVLDVDHFKKVNDVYGHMYGDKILARVGRKLKEVVGEDGVVGRI 335 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQIN---ISSGPSIHITISAGIAERCHK-E 231 GG+EF G +++ A L LR I +QI + + IT S G + + Sbjct: 336 GGDEFIIVFNGINDEHA--LRGMLRAI--RTQIKWEFVDDFEDLMITCSIGASYSPNNGT 391 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +AD LYVAK+ GR+R V F D Sbjct: 392 EYEELFKKADYCLYVAKEKGRDRYVFFRD 420 >gi|220908588|ref|YP_002483899.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7425] gi|219865199|gb|ACL45538.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7425] Length = 337 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 16/175 (9%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L ID L+G+ N F S L L ++ D+DYFK ND+ GH +GD Sbjct: 163 LKKLVAIDGLTGISNRRRFDQYFQQEWSRLAREELSLGLILADLDYFKPYNDSHGHLMGD 222 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + ++ + V P V R GGEEFA +S +A +R+ +++ + + Sbjct: 223 DCLRTIAQTIGRVLKRPGDLVSRYGGEEFAIVLPNTSADGTFKVAEAIRQQVQSLNLPHN 282 Query: 212 SGPSIHITISAGIAERCHKEPI-----STIIYRADQALYVAKKSGRNRVVCFSDI 261 P +T+S G+A PI +I AD+ALY+AK GRN+VV DI Sbjct: 283 QSPHGIVTLSLGVAALT---PIVGFSPDYLIAIADRALYLAKARGRNQVVYLQDI 334 >gi|171319753|ref|ZP_02908840.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] gi|171094989|gb|EDT40014.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] Length = 508 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S L+EL + ++ ++ D ++G N FI + ++ D+D FK Sbjct: 331 SALQELRRTNQKLEYMAATDPMTGASNRRQFIGQVEREIVRAERDGTPFCLLALDLDNFK 390 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH +GD+V+ + Q + + R+GGEEF A + A + A +R Sbjct: 391 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 450 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I +S + + +T+S G+A+ + ++ D+ LY AK+ GRNRVV Sbjct: 451 SSIASSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKRDGRNRVVA 507 >gi|167922268|ref|ZP_02509359.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Burkholderia pseudomallei BCC215] Length = 688 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 4/127 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG- 186 KL+I+F D+D FK IN + GHP GD+V+ S +L+ V RLGG+EF Sbjct: 288 KLAILFMDLDGFKTINGSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESV 347 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 SS+ EAA +A ++ + + + N G + +T S GIA + T++ AD A+Y Sbjct: 348 SSDDEAARVARNVLERMRKGRWN--DGQVLQVTPSIGIALYPKDGDTADTLLRHADAAMY 405 Query: 246 VAKKSGR 252 AK+ GR Sbjct: 406 AAKRGGR 412 >gi|119471142|ref|ZP_01613674.1| hypothetical protein ATW7_09201 [Alteromonadales bacterium TW-7] gi|119445798|gb|EAW27080.1| hypothetical protein ATW7_09201 [Alteromonadales bacterium TW-7] Length = 298 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 11/164 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y+R+ +L+ D L+GL N S F + + Y S++ D+D FKQ+ND FGH Sbjct: 134 YSRVLKLATKDSLTGLNNRSQFNDILSQKLENCRRYQRPFSLMLLDLDNFKQVNDKFGHK 193 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD + + L V R GG+EFA + +++ + + ++ S + Sbjct: 194 IGDDTLKEFATVLNSSIRATDTVFRFGGDEFAILIEDPEFKTNQVVSERIMQFVKQSSLM 253 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ I + ++ C E I RAD+ LY AK SGRN Sbjct: 254 SKHEVTVSIGYTLAMSNDCDIE----IFSRADKGLYKAKASGRN 293 >gi|78485494|ref|YP_391419.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena XCL-2] gi|78363780|gb|ABB41745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Thiomicrospira crunogena XCL-2] Length = 1466 Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%) Query: 96 SYNRISQLSRIDCLSGL---------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNF 146 S +I L+ D L+GL LNHS IS+ N L+++F D+D+FK +ND Sbjct: 1031 SEEKIKHLAHYDPLTGLVNRELLMDRLNHS--ISTADRNNTPLALLFIDLDHFKNVNDTL 1088 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH VGD+++ + +++ + + R GG+EF + E A +A KI+E+ Sbjct: 1089 GHQVGDQLLIEVGQRILKILRDEDTIARQGGDEFIVVLPDTGENGAVHVA---EKILESI 1145 Query: 207 QINISSGP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 ++ P + IT S GIA + +++ AD A+Y AK GRN Sbjct: 1146 SDQLNLKPYKLFITPSIGIAVYPQDGKDADSLLKNADTAMYQAKNDGRN 1194 >gi|265992964|ref|ZP_06105521.1| diguanylate cyclase [Brucella melitensis bv. 3 str. Ether] gi|262763834|gb|EEZ09866.1| diguanylate cyclase [Brucella melitensis bv. 3 str. Ether] Length = 240 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 23/229 (10%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97 IAT+I I+ G+ G++ V L +++ I++ LG S L+EL SY Sbjct: 21 IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYR 76 Query: 98 ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148 N +++++ +D L+GLLN +FI + N+ +F D+DY KQIND +GH Sbjct: 77 TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 136 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204 P GD I ++ L + + R+GG+EF A G+ ++L++ LR ++ Sbjct: 137 PAGDDAIIAVAPALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 196 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + N+ S +T+S G + ++ AD+ LY KKS R Sbjct: 197 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 240 >gi|258512070|ref|YP_003185504.1| diguanylate cyclase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478796|gb|ACV59115.1| diguanylate cyclase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 720 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 12/182 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S+L E Y + S D +GLLN+ F L N +S++ D+D+FK Sbjct: 372 SVLLENAKLYQELQDRSFRDEATGLLNYRYFYEELSRRVQVSLRENRPVSVLIVDVDFFK 431 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 + ND +GH GD V+ + L R GGEEF A L +S +EA +A +R Sbjct: 432 RFNDTYGHLAGDVVLREVGRILERHAAPDGVAARYGGEEF-AVLLWASAREAYEIAEAIR 490 Query: 201 KIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYV-AKKSGRNRVVC 257 + + ++ IT+S G+A C H E ++ +AD A+Y AK+ GRNR Sbjct: 491 QDVSKLAVDFEGYHLQGITVSIGMAT-CPDHSESDRDLLVKADSAMYWGAKQRGRNRTAM 549 Query: 258 FS 259 ++ Sbjct: 550 YA 551 >gi|241767132|ref|ZP_04764898.1| diguanylate cyclase [Acidovorax delafieldii 2AN] gi|241362279|gb|EER58297.1| diguanylate cyclase [Acidovorax delafieldii 2AN] Length = 508 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 8/173 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 +L +R S +R D L+G LN ++ L + DID FK IND Sbjct: 336 QLQQELDRASAQARHDPLTGSLNRKGLDEAMEREIARARRRGAPLCLALLDIDNFKTIND 395 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD + L+ V + R GGEEF + L++ + Sbjct: 396 RLGHTAGDAALVHLAQVTREVMRPQDLLARYGGEEFVLILPDTPVAHGVAAMTRLQREL- 454 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ + + IT SAG+A+ E + I RAD+++Y+AK+SG+NRV+ Sbjct: 455 TTRFFLQGKEKVLITFSAGVAQLGESETSTEAIQRADKSMYLAKRSGKNRVMA 507 >gi|222525055|ref|YP_002569526.1| diguanylate cyclase [Chloroflexus sp. Y-400-fl] gi|222448934|gb|ACM53200.1| diguanylate cyclase [Chloroflexus sp. Y-400-fl] Length = 301 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 Y + L+ D L+G+ N AF +L Y L+++ DID FK ND +GH Sbjct: 123 YAEVEALAVTDSLTGIANRRAFDRALEREFVRARHYGYPLALIMVDIDSFKHYNDTYGHL 182 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + ++ L FV R GGEEFA + +Q A +A +R+ E S Sbjct: 183 AGDDRLRAVAQLLAQSVREVDFVARYGGEEFAIILTNTDKQTAIAVAEQIRRKAEMSCPE 242 Query: 210 ISSG-PSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +G P T+S G+A + P++ ++ AD A AK++G+NRV Sbjct: 243 PLNGLPVSGYTLSLGVAAFPDDAQTPVA-LLLAADNAELAAKRAGKNRV 290 >gi|91224534|ref|ZP_01259796.1| putative GGDEF family protein [Vibrio alginolyticus 12G01] gi|91190876|gb|EAS77143.1| putative GGDEF family protein [Vibrio alginolyticus 12G01] Length = 656 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 11/162 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157 ++ID L+ LN +A I ++ S K + D+D FK IND +GHP GD V+ Sbjct: 482 AKIDSLTCALNRAAIIETIKSQTSKAEGDFRYVLALIDLDDFKAINDQYGHPTGDLVLQQ 541 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + L ++GRLGGEEF E + L K I S+ ++ S + Sbjct: 542 VCKALKAKLNKGDYLGRLGGEEFILLLKNVDEIDVPFRVQSLHKTI--SEKSVHSLNNHQ 599 Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256 + ISA +A P++ +Y DQALY AKK G+N +V Sbjct: 600 LNISASLAYLSTSMPLTNFDELYSILDQALYNAKKQGKNSLV 641 >gi|148550034|ref|YP_001270136.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148514092|gb|ABQ80952.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida F1] Length = 708 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 15/159 (9%) Query: 107 DCLSGLLNHSAFISSLGS---YNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F + NE+ ++++ D+D FK+IND+ GH GD+V+ +++ Sbjct: 281 DPLTGLLNRRGFYQAAEGALLRNERSDKAQALMYMDLDGFKRINDSLGHDAGDRVLRWVA 340 Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +QL G+ + R+GG+EF A +L EQ L ++ + +++ G + Sbjct: 341 EQLKDCLGSEALLARMGGDEFTALFDSLPYPEQAGRYAERLLERVSISHEVD---GLDVC 397 Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +S GIA C + ++ AD A+Y AK++GR + Sbjct: 398 LGVSIGIATYPDCGAN-VEGLLRSADAAMYAAKQAGRQQ 435 >gi|172058717|ref|YP_001815177.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Exiguobacterium sibiricum 255-15] gi|171991238|gb|ACB62160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Exiguobacterium sibiricum 255-15] Length = 878 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 15/174 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +I +L+ D L+G +N + F L +E + + F D+D FK +ND+FGH VGD Sbjct: 453 KIRRLAYYDHLTGAINRTYFEEVLHHLIETEQADETIVLCFIDLDDFKLVNDSFGHHVGD 512 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQ---EAAILANDLRKIIENSQ 207 +++ ++ +L V R GG+EF + S +Q A L +DL++ Sbjct: 513 QLLIQVAKRLQEAAEPDDLVARQGGDEFTVILRNVTSDDQARCRTARLLDDLKRTYAIEG 572 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I + S PS I A R ++ + T++ +AD A+Y AK G ++ F DI Sbjct: 573 IELISNPS----IGAVSCRRTSEKHVVTLLKQADLAMYQAKTGGGKSIIFFEDI 622 >gi|312127440|ref|YP_003992314.1| diguanylate cyclase with gaf sensor [Caldicellulosiruptor hydrothermalis 108] gi|311777459|gb|ADQ06945.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor hydrothermalis 108] Length = 557 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 12/172 (6%) Query: 97 YNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 Y ++ ++ +D L+G N +S G Y +SI FD+D FK++ND +GH Sbjct: 382 YQQMRSMAMVDGLTGAFNRIYLYEVLEREIQASAGRY--PISIALFDVDNFKKLNDTYGH 439 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDKV+ + V R GGEEF EA + +R+ IE+ I Sbjct: 440 LFGDKVLQTIVRIAREKVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRRAIESETI 499 Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +T+S GIA H E + +I AD A+Y AK SG+N V ++ Sbjct: 500 E-DNLIQTRVTVSFGIASYPLHAENVKDLIKCADVAMYRAKSSGKNCTVVYN 550 >gi|302186038|ref|ZP_07262711.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 748 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 21/167 (12%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N + ++ L + E+ +++F D+D FK +ND+ GH GDK++ ++ Sbjct: 320 DELTSLFNRAYLMNELTTAFEIRDPRYERATVLFLDLDGFKVVNDSMGHLAGDKLLKAVA 379 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214 ++L + + R+GG+EFA +G + E A+ K+ E SQ++ + G Sbjct: 380 NRLQTCVRSNDVLARIGGDEFAILLMGKDQPETAV------KMAERIVSQLHTAIQIEGQ 433 Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I I+ S GI A H +P ++ AD A+Y AKK GR R F+ Sbjct: 434 DIFISCSIGIVTAGESHTKP-EELLRDADVAMYSAKKQGRGRWSIFN 479 >gi|297538054|ref|YP_003673823.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera sp. 301] gi|297257401|gb|ADI29246.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera sp. 301] Length = 331 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 11/171 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+ + N + F L SY ++ L+++F D+D FK+IND +GH G Sbjct: 159 RLENLAHFDALANVPNRTLFNDRLKLALSYAKREKKMLAVMFIDLDLFKEINDLYGHETG 218 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ +S QLV V R+GG+EF E E L KI+E I Sbjct: 219 DIVLKKVSRQLVSCVRESDTVARMGGDEFVILLPIIDEIEDVKLV--ASKIVEAVAQPIK 276 Query: 212 SGPS-IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +HIT S GIA H + ++ AD A+Y AK SG+N+ F + Sbjct: 277 VAKTHLHITCSIGIAVYPQHGKDEKLLVINADMAMYQAKNSGKNQAKFFEE 327 >gi|288575138|ref|ZP_06393495.1| response regulator receiver modulated diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570879|gb|EFC92436.1| response regulator receiver modulated diguanylate cyclase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 342 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 21/199 (10%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128 IT+ L L +L++ I ++SR D L+G+ N +S L N Sbjct: 135 ITVGLRLVEAYRKVLRQ----KEAIDRMSRTDELTGIFNRRYVLSYLEKSLDRAQRENRP 190 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LSI D+D+FK INDN+GH GD V+ L + GR GG+EF + Sbjct: 191 LSICLCDVDFFKHINDNYGHQAGDFVLRKLGYFMETFLEKQGVAGRYGGDEFLFVLPEAD 250 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI-------STIIYRAD 241 E EA + L + I ++ + +G + I++S G++ P+ S +I AD Sbjct: 251 EAEAKEIVCSLYERILSAHF-VFNGKELPISLSCGLS--FVLSPMEHGMWNSSNLIKMAD 307 Query: 242 QALYVAKKSGRNRVVCFSD 260 ALY AK+ G+NR+ + D Sbjct: 308 DALYEAKRRGKNRICFYRD 326 >gi|213420659|ref|ZP_03353725.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 527 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 123 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 182 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A + + E A+ + Sbjct: 183 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 242 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 243 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 297 Query: 257 CFS 259 FS Sbjct: 298 VFS 300 >gi|193222243|emb|CAL60790.2| conserved hypothetical protein; putative membrane protein, putative GGDEF domain [Herminiimonas arsenicoxydans] Length = 381 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 88/189 (46%), Gaps = 25/189 (13%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEK 128 +I LLL Y E + NR L+ D LS L N A +++ G Sbjct: 204 SIGLLLLYF------ERTVEENR--HLATHDELSKLFNRRAIVAA-GERELYLSIRLQRD 254 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+I F DID FK+ ND FGH GD VIA ++ L + VGR GGEEF G Sbjct: 255 LAIAFIDIDLFKRFNDEFGHAAGDTVIAEVAAVLQQTCRSIDMVGRYGGEEFLVILPGVD 314 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALY 245 Q A + L + + + IH +TIS G+A R + + ++ RAD ALY Sbjct: 315 SQSAVQIGQRLVEAMREYRF-----LGIHPVTISIGMAILPRNAECSWAQLLRRADAALY 369 Query: 246 VAKKSGRNR 254 AK GR+R Sbjct: 370 EAKNMGRDR 378 >gi|89900673|ref|YP_523144.1| diguanylate cyclase [Rhodoferax ferrireducens T118] gi|89345410|gb|ABD69613.1| diguanylate cyclase [Rhodoferax ferrireducens T118] Length = 327 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 71/138 (51%), Gaps = 20/138 (14%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKV-IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 KLS++ D+DYFK ND +GHP GDKV IA + V+ + + R GGEEFA Sbjct: 184 KLSLIMIDVDYFKDYNDAYGHPAGDKVLIAVVQALQAVLLRSTDKLARYGGEEFAVILPD 243 Query: 187 SSEQEA---------AILANDL--RKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 E +A A+LA +L RK ++Q+ +S G S T+ AG Sbjct: 244 CGEHKALAIAELLRTAVLALNLPHRKSAISNQLTVSLGTS---TLKAG-----QTSSAQA 295 Query: 236 IIYRADQALYVAKKSGRN 253 ++ ADQALY AK GRN Sbjct: 296 LLDAADQALYAAKNQGRN 313 >gi|62180267|ref|YP_216684.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127900|gb|AAX65603.1| putative PAS/PAC domain; diguanylate cyclase/phosphodiesterase domain 1; Diguanylate cyclase/phosphodiesterase domain 2 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 660 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 390 Query: 257 CFS 259 FS Sbjct: 391 VFS 393 >gi|320105383|ref|YP_004180973.1| diguanylate cyclase [Terriglobus saanensis SP1PR4] gi|319923904|gb|ADV80979.1| diguanylate cyclase [Terriglobus saanensis SP1PR4] Length = 454 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 20/172 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S+LS D L+GL N F S L + ++++ D+D+FKQ+ND++GH GD Sbjct: 277 LSELSIRDGLTGLYNRRHFDSYLNLEWRRVPRVKKPMALLLLDVDHFKQLNDHYGHQYGD 336 Query: 153 KVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 L D ++ P R GGEEFA G + +A +R I + Sbjct: 337 DC---LRDIARILETQPRRASDLAARFGGEEFAVLLPGCDLEGGLEVAERIRVAIMETGG 393 Query: 209 NISSGPSIHITISAGIAERCH----KEPISTIIYRADQALYVAKKSGRNRVV 256 S P +T+S G+ C+ + +I RADQA+Y AK +GRN V+ Sbjct: 394 EHYSNPEKRMTVSIGVT--CYLPATDDSPERMIGRADQAMYKAKGAGRNCVI 443 >gi|224583808|ref|YP_002637606.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468335|gb|ACN46165.1| hypothetical protein SPC_2029 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714741|gb|EFZ06312.1| Cyclic di-GMP phosphodiesterase Gmr [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 663 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSDSLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|221233629|ref|YP_002516065.1| PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000] gi|220962801|gb|ACL94157.1| PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000] Length = 694 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 19/173 (10%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+GL N + F +S+ + E ++ D+D+FK IND GH GD Sbjct: 266 IETLAFKDPLTGLPNRTLFQHRFQEAVSASETLGEMFGLIMIDVDHFKDINDTLGHDAGD 325 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AALGSSEQEAAI--LANDLRKIIENSQ 207 ++ L+ L F T V RLGG+EFA G ++ I L + LR+ I++ Sbjct: 326 ALLKRLAGMLQHAFRTGDTVARLGGDEFAVILRGLHGEADMTRPIEALQDLLRRPIQHGG 385 Query: 208 INISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + ++ SI + + A+ H +I AD ALY AK++GRNR + F Sbjct: 386 RSFTASASIGAALHGDLDADPAH------MIKNADIALYRAKEAGRNRSIVFE 432 >gi|190891453|ref|YP_001977995.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190696732|gb|ACE90817.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 422 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 11/173 (6%) Query: 97 YNRISQLSRIDCLSGLLNHS-----AFISSLGSYNEKLS--IVFFDIDYFKQINDNFGHP 149 YN + + + D L+G+ + + A + + + LS ++ D D+FK +ND +GH Sbjct: 249 YNDLLERTGRDMLTGVYDRTRMELEAPLMLREALRQGLSATVLIIDADHFKDVNDGYGHL 308 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ +L + + R GGEEF A G++ +E +LA LR I S Sbjct: 309 QGDVVLKSIAARLGTTLRSSDRIFRFGGEEFVAVCPGTNHEEGLLLAERLRWTIATSVKT 368 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 P +T+S G+A + ++ AD LY AKK GRN VV S + Sbjct: 369 PDGSP---VTVSIGVATADEDGSGFTAVLSAADGRLYAAKKGGRNCVVGRSGL 418 >gi|119964390|ref|YP_948938.1| GGDEF domain/EAL domain-containing protein [Arthrobacter aurescens TC1] gi|119951249|gb|ABM10160.1| putative GGDEF domain/EAL domain protein [Arthrobacter aurescens TC1] Length = 517 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 9/167 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D L+GL N SAF ++L G N++ +I+ D+D FK IND+ GH +GD Sbjct: 81 MQRMAMTDPLTGLNNRSAFATALTKAQANGGQGNKRPAILLLDMDGFKAINDSLGHTIGD 140 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 KV+ +++++ V R+GG+EFA + EA+ + + R + + + Sbjct: 141 KVLETVANRISGAVREQDMVARMGGDEFAVLLTEVTPAEASAIGS--RILAAVAGVMEIE 198 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G + +S G+ + ++ AD A+Y +K GR ++ F+ Sbjct: 199 GQHLRCGVSMGLRMADPGQRAEELMMEADIAMYESKADGRGKLKVFA 245 >gi|24373770|ref|NP_717813.1| sensory box protein [Shewanella oneidensis MR-1] gi|24348153|gb|AAN55257.1|AE015663_7 sensory box protein [Shewanella oneidensis MR-1] Length = 752 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 9/162 (5%) Query: 107 DCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +A + S S + D+D FKQ+ND +GH GD ++ + + Sbjct: 318 DSLTGLANRNALFRQIQELINADSLTPGFSFMLMDLDNFKQVNDTYGHDKGDVLLVQMVE 377 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 Q+ + RLGG+EFA G +++E + LA+ + K + + +S ++ + Sbjct: 378 QVKICLDPQAVFARLGGDEFAILLPGVVTQRELSQLADKINKQV-YRRYELSHDKGVYSS 436 Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S GIA + ++ ADQA+Y++K +GRNR F++ Sbjct: 437 VSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478 >gi|303240602|ref|ZP_07327117.1| diguanylate cyclase and metal dependent phosphohydrolase [Acetivibrio cellulolyticus CD2] gi|302591839|gb|EFL61572.1| diguanylate cyclase and metal dependent phosphohydrolase [Acetivibrio cellulolyticus CD2] Length = 553 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 31/204 (15%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEK 128 I +++GY S K + R+ L+ ID ++G+ NH F I+ + Sbjct: 151 IVACIMVGYTSEQGRKNI----KRLEWLANIDGVTGVFNHRYFQTKLEEEITKADNSGST 206 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L ++ D+D FK+ NDN+GH GD ++A S+ + G V R GG+EF ++ Sbjct: 207 LGMLMIDLDNFKRFNDNYGHKAGDILLAKTSEIFMDQTGDQDIVCRYGGDEFVILLPDAN 266 Query: 189 EQEAAILANDLRKIIEN-----------SQINISSGPSIHITISAGIAERCHKEPISTII 237 + + +RK + ++ +S+G SI+ ++ E +I Sbjct: 267 SERILTVIEHIRKAFDKLTNSEEVFAIPDKVTLSAGYSIYPELA---------ESKDDLI 317 Query: 238 YRADQALYVAKKSGRNRVVCFSDI 261 +AD ALY AK GRN V + DI Sbjct: 318 MQADSALYRAKNMGRNNVKLYRDI 341 >gi|295090080|emb|CBK76187.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain [Clostridium cf. saccharolyticum K10] Length = 455 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 7/163 (4%) Query: 107 DCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+G LN + ++K ++ DID FK++ND +GH GD+V+ L++ L Sbjct: 290 DPLTGTLNRKGAAGCIRQSFMTDKKGTLFLLDIDNFKKVNDIYGHQAGDRVLMALANILK 349 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V V R+GG+EF G + ++ + R IIE + P I+IS G Sbjct: 350 VHTRRQDTVSRMGGDEFLIYLSGCVAKN--VVEDRARSIIEAFSLEGKDYPMAGISISIG 407 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRN--RVVCFSDIENN 264 ++ R +E + +ADQALY AK++G+ R+ D EN Sbjct: 408 VSMREKEESFQELYLQADQALYEAKRTGKGQYRLRKKEDSENG 450 >gi|288942102|ref|YP_003444342.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288897474|gb|ADC63310.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 304 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 16/169 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ +D L+ + N F +L L++ D+DYFK ND++GH GD Sbjct: 137 LDSLASLDGLTHIPNRRRFDEALKQEWARAAREGAPLALAMLDVDYFKSYNDHYGHGRGD 196 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + + ++D L P V R GGEEF + A LA R + I + Sbjct: 197 ECLRRVADALRARLQRPADLVARYGGEEFVLLLPDTDAAGALALAESCRVGVSALHIPHA 256 Query: 212 -SGPSIHITISAGIAERCHKEPIST----IIYRADQALYVAKKSGRNRV 255 S + H+T+S G+A +P S ++ RAD+ALY AK GRNRV Sbjct: 257 YSAAADHVTLSIGVAA---TQPPSDGSGLLLARADEALYRAKSEGRNRV 302 >gi|229591547|ref|YP_002873666.1| putative sensory box GGDEF transmembrane protein [Pseudomonas fluorescens SBW25] gi|229363413|emb|CAY50587.1| putative sensory box GGDEF transmembrane protein [Pseudomonas fluorescens SBW25] Length = 521 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 124 SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 + + LS++ FD+D+FK+IND GH D V+ L +L + R GGEEFA Sbjct: 389 AQHSPLSLIMFDVDHFKRINDLKGHQCVDSVLKSLCVRLRSAIRKTDLLCRTGGEEFALI 448 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 GS + +LA LR ++ + +T S G+A E + RAD A Sbjct: 449 CPGSDLNDTTLLAEKLRALVSALPFEEAG----QVTCSFGVATWIPSESFDAFVRRADSA 504 Query: 244 LYVAKKSGRNRV 255 +Y AK SGR++V Sbjct: 505 MYSAKSSGRDQV 516 >gi|225850663|ref|YP_002730897.1| FOG: EAL domain protein [Persephonella marina EX-H1] gi|225645507|gb|ACO03693.1| FOG: EAL domain protein [Persephonella marina EX-H1] Length = 784 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 13/163 (7%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F + L E ++++F D+D FKQ+ND +GH +GD+++ + Sbjct: 622 DGLTGLPNRLLFYNRLQHTLLRARRNREYVAVMFLDLDGFKQVNDTYGHDIGDELLKEVG 681 Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +L V RL G+EF L S E I L E IN G I+ Sbjct: 682 KRLQHTVRKIDTVARLAGDEFTVIIENLNSPENVNVIAKKILNSFKEPFVIN---GNKIN 738 Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + S GIA T+I AD A+Y+AKKSG+NR V ++ Sbjct: 739 VGTSIGIAVFPLDGTDADTLIKNADMAMYLAKKSGKNRYVVYT 781 >gi|172060868|ref|YP_001808520.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] gi|171993385|gb|ACB64304.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] Length = 466 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S L+EL + ++ ++ D ++G N FI + ++ D+D FK Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIGQVEREIVRAERDGTPFCLLALDLDNFK 348 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH +GD+V+ + Q + + R+GGEEF A + A + A +R Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 408 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I +S + + +T+S G+A+ + ++ D+ LY AK+ GRNRVV Sbjct: 409 SSIASSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKRDGRNRVVA 465 >gi|171058413|ref|YP_001790762.1| diguanylate cyclase [Leptothrix cholodnii SP-6] gi|170775858|gb|ACB33997.1| diguanylate cyclase [Leptothrix cholodnii SP-6] Length = 407 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 28/216 (12%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFIS---------YNRISQLSRI---DCLSGLL 113 V+ L ++ +SL++ +LKE +S R ++L + D L+GL Sbjct: 186 VDGLIAAVLGFMVSLMI--WRKHVLKETLVSELQVTRMALQERSTELQSMAVRDTLTGLW 243 Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N + ++ + + + D+D FK IND +GH GD+V+A ++ L+ Sbjct: 244 NRAEIMRLAQRELTRAQRHGGETCFIMVDLDSFKLINDRWGHATGDRVLAAVASLLLEEL 303 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 VGRL GEEFA ++ +EA +LA L + ++ + ++ +T S G A Sbjct: 304 RATDEVGRLAGEEFAVLLPQTNLEEARLLAERLHLAVARLRVPLGDA-TVRLTASIGAAS 362 Query: 227 RCHKE--PISTIIYR----ADQALYVAKKSGRNRVV 256 + + P+ R A+QAL AK GR+RVV Sbjct: 363 QTGRALVPVPQQFERLFGSAEQALSSAKSQGRDRVV 398 >gi|126660384|ref|ZP_01731495.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Cyanothece sp. CCY0110] gi|126618305|gb|EAZ89063.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Cyanothece sp. CCY0110] Length = 822 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 21/205 (10%) Query: 74 ISITISLLLGY---ISGSILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSLG 123 I I I+L+ G I G++L +F + SQL+ D L+GL N L Sbjct: 404 IDIVINLIRGQNNQILGTVL--IFRDVTQASQLAHQLSWEASHDNLTGLANRRELEKQLS 461 Query: 124 ----SY-NEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 SY NE + + + D+D FK IND GH GD+++ +++ L + + RLG Sbjct: 462 LAIESYKNEDVEHILCYLDLDQFKIINDTCGHVAGDELLKQVTNLLQTRVRSSDILARLG 521 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPIST 235 G+EFA G S +A +AN+LR++++N + + + +S GI + + I++ Sbjct: 522 GDEFALLLKGCSLGKAKTIANNLRQLVKNFRFTWDN-EIFSVGVSIGIVSINQEIQTITS 580 Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260 +I AD A Y AK GRN V + + Sbjct: 581 VINAADSACYTAKSRGRNCVYVYKE 605 >gi|77919670|ref|YP_357485.1| signal transduction protein [Pelobacter carbinolicus DSM 2380] gi|77545753|gb|ABA89315.1| diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM 2380] Length = 988 Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 17/173 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 I +++ D L+ L N + F L E+ L+++F D+D+FK +ND+ GH GD Sbjct: 548 IHRMAYYDHLTELPNRALFQKELDRRLEEAVGRGHGLALMFLDLDHFKGVNDSLGHAKGD 607 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIENSQINI 210 ++ ++ +L G F+ RL G+EF L + A+ LA ++++I+ S N+ Sbjct: 608 LLLQKIAARLQGCLGREDFLARLNGDEF-IFLLTEIDDPVAVKALAGNVQRIMA-SPFNL 665 Query: 211 SSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G I++ S GIA C H + ++ RAD+ALY AK+ GRN + FS+ Sbjct: 666 -DGDEIYVGTSIGIA--CYPLHGVDVENLMKRADRALYAAKERGRNAIELFSE 715 >gi|56751585|ref|YP_172286.1| hypothetical protein syc1576_d [Synechococcus elongatus PCC 6301] gi|56686544|dbj|BAD79766.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 438 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 11/194 (5%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLGS 124 +++ + L + +LK L ++ R+ RID L+ + N F + G Sbjct: 236 VLLTQVAEQLSIAIAQSQLLKTLQVTNQRLQDQVRIDGLTQIPNRRRFDEYFNDVWLWGC 295 Query: 125 YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAA 182 + ++++ D+DYFK ND +GH GD+V+ + L VV V R GGEEF A Sbjct: 296 RDHTPVALLLIDVDYFKTYNDFYGHLAGDEVLRKIGLLLNSVVLRATDLVARYGGEEFVA 355 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCH--KEPISTIIYR 239 ++ + A +A L+ ++ QI + P + +T+S GIA ++ +I + Sbjct: 356 VLPSTTLEGAQAVARRLQADLQRLQIPHNHSPVAAWVTVSIGIAVTIPTIDVALTDLIDQ 415 Query: 240 ADQALYVAKKSGRN 253 AD+ALY AK +GRN Sbjct: 416 ADKALYEAKSAGRN 429 >gi|88810327|ref|ZP_01125584.1| putative diguanylate cyclase [Nitrococcus mobilis Nb-231] gi|88791957|gb|EAR23067.1| putative diguanylate cyclase [Nitrococcus mobilis Nb-231] Length = 679 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 81/172 (47%), Gaps = 21/172 (12%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+GL N F L N +++++F DID+FK ND +GH GD Sbjct: 491 LRELSIRDSLTGLANRRHFDEFLDQQWRQLMRSNARIALLFIDIDHFKGYNDRYGHQAGD 550 Query: 153 KVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 A L V+ G G R GGEEF A A LR+ +EN I Sbjct: 551 ---ACLKKIAAVIAGAARRAGDLAARYGGEEFVVVLAQVERPYAQDTAETLRRAVENLAI 607 Query: 209 -NISSGPSIHITISAGIAERCHKE----PISTIIYRADQALYVAKKSGRNRV 255 + S + ++T+S G+ C K S ++ AD+ALY AK GRNRV Sbjct: 608 PHQDSKTASYVTVSIGLV--CAKPDAALSASRLLEAADKALYRAKSRGRNRV 657 >gi|330820418|ref|YP_004349280.1| diguanylate cyclase [Burkholderia gladioli BSR3] gi|327372413|gb|AEA63768.1| diguanylate cyclase [Burkholderia gladioli BSR3] Length = 398 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 12/168 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISS----LGSY---NEKLSIVFFDIDYFKQINDNFGHPV 150 R+ +L+ ID L+G+ AFI+ LGS LSI DID FK IND GH Sbjct: 213 QRMERLATIDDLTGVFGRRAFIARAEALLGSARGAKSPLSIALLDIDNFKSINDRHGHAA 272 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+ +A ++ + +GR+GGEEFA + +++A L + LR I+ S + Sbjct: 273 GDQALANVAATISREIRQADVLGRVGGEEFALLLPRTGKEDALRLVDRLRAIVATS---V 329 Query: 211 SSGPS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S GP+ + T+SAG+ E + +++ + RAD ALY AK GRN VV Sbjct: 330 SEGPAACVACTLSAGVDEFRACDTLASAMARADAALYAAKAKGRNCVV 377 >gi|315182217|gb|ADT89130.1| GGDEF domain protein [Vibrio furnissii NCTC 11218] Length = 478 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 13/168 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151 YN Q R+D L+G+ N AF L + E +++ D+D FK +ND +GH G Sbjct: 318 QYNAHHQQLRLDTLTGIQNRRAFDLDLAAMAENQQSPYALLLIDVDKFKHVNDTWGHQFG 377 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+A ++ L T + R+GG+EFAA + + A L L +++ + + Sbjct: 378 DNVLARVAQVLTKNLDT-HSIYRIGGDEFAALVPVNDD---APLGEQLNRLVLDMRHQKW 433 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 H+T+S G++ ++ +AD+ALY +K++GR+ C+S Sbjct: 434 REQGCHVTLSIGVS--IGPNTPCELVNQADKALYRSKENGRD---CWS 476 >gi|226948480|ref|YP_002803571.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum A2 str. Kyoto] gi|226841408|gb|ACO84074.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum A2 str. Kyoto] Length = 419 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 21/183 (11%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 E I ++ Q++ D L+ L N ++F+ L L+I+F D+D FK++ND Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSKKKQSLLAIMFLDLDKFKEVND 303 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI- 202 NFGH GDK++ ++ ++ + + R GG+EF + E++ LA D+ ++ Sbjct: 304 NFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLAMDIIEVF 363 Query: 203 -----IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IE +NI + I G + +I +AD+A+Y AKK G N+ Sbjct: 364 KEPICIEEIYVNIKTSIGISFFPKDGHTSQ-------ELIKKADKAMYDAKKRGSNKFQI 416 Query: 258 FSD 260 + D Sbjct: 417 YKD 419 >gi|217968638|ref|YP_002353872.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Thauera sp. MZ1T] gi|217505965|gb|ACK52976.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Thauera sp. MZ1T] Length = 737 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 105/213 (49%), Gaps = 22/213 (10%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYN---RISQLSRIDCLSGLLNHSAFISSL- 122 E L+++ S+T L L G + +E+ + RI QL+ D L+GL N +A + L Sbjct: 261 EALAVLARSVTDELELRQRVGELEEEVARRHEAEARIMQLATRDALTGLPNRAALMDRLH 320 Query: 123 ------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 L+++F D+D FK IND GH +GD ++ ++ +L V RLG Sbjct: 321 QGVRAAQRSGNLLAVLFLDLDRFKWINDTLGHDLGDALLQEMALRLSRAVRECDTVARLG 380 Query: 177 GEEFAAAALGSSEQEA---AILANDLRKIIENSQINISSGPSIHITISAGIAE---RCHK 230 G+EF A LG Q A A+ A + I ++ G ++ + S G+A + H Sbjct: 381 GDEF-AIVLGDLWQVADAEAVAAKIVDVITRPLEVR---GHALRVGGSVGVAVYPFQAHD 436 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 E +++ AD A+Y AK+SG NR FS+ N Sbjct: 437 E--ESLLRHADLAMYHAKESGGNRHQLFSEQMN 467 >gi|254432167|ref|ZP_05045870.1| diguanylate cyclase [Cyanobium sp. PCC 7001] gi|197626620|gb|EDY39179.1| diguanylate cyclase [Cyanobium sp. PCC 7001] Length = 275 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 107 DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N A + Y S+ D+D FK+IND++GH GD+V+ L+ Sbjct: 110 DILTGVPNRRLISERCRAEDARTTRYGSTYSLALIDVDNFKRINDSYGHTTGDQVLVELA 169 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF A + + + A I+A + ++ + ++ S + +T Sbjct: 170 AVLKSCVREFDLCARWGGEEFLALFVDTGLETAEIIAQRILDMVRHLRVKAGS-EELSLT 228 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +S G+A+ E + RADQALY AK SGR+ Sbjct: 229 VSIGVAQHAPSELYTNTFARADQALYEAKHSGRD 262 >gi|170701230|ref|ZP_02892199.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] gi|170133859|gb|EDT02218.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] Length = 508 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S L+EL + ++ ++ D ++G N FI + ++ D+D FK Sbjct: 331 SALQELRRTNQKLEYMAATDPMTGASNRRQFIGQVEREIVRAERDGTPFCLLALDLDNFK 390 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH +GD+V+ + Q + + R+GGEEF A + A + A +R Sbjct: 391 NINDAYGHQIGDEVLRGVVRQCLEAIRPAGALARVGGEEFMALLPEMPLEGARMTAERVR 450 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I +S + + +T+S G+A+ + ++ D+ LY AK+ GRNRVV Sbjct: 451 SSIASSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKRDGRNRVVA 507 >gi|157163979|ref|YP_001467537.1| phosphoglucosamine mutase [Campylobacter concisus 13826] gi|112801095|gb|EAT98439.1| diguanylate cyclase/phosphodiesterase [Campylobacter concisus 13826] Length = 786 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 11/181 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQIN 143 L+EL R+ QLS D L+GLLN +F+S L + EK+ I DI++FK IN Sbjct: 346 LRELEEKNERLRQLSEFDSLTGLLNRQSFLSKLSEMIKTKALGEKIDIYSIDINHFKAIN 405 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D++GH VGD+V+ LS + + + R GG++F +E L II Sbjct: 406 DSYGHYVGDEVLLKLSKNIKAILPEGAIISRFGGDDFMIVLKQKNEGHYREFLYYLLNII 465 Query: 204 ENSQINISSGP-SIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSDI 261 IS G I + G++ E ++ +I +A AL AK+ + V + DI Sbjct: 466 AE---QISVGDYKIALGAKVGVSSTQTSEILADDLIMQAGAALDAAKRDVNTKYVFYDDI 522 Query: 262 E 262 + Sbjct: 523 K 523 >gi|330504863|ref|YP_004381732.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] gi|328919149|gb|AEB59980.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] Length = 715 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 17/165 (10%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F +L S +++++++ D+D FK+IND+ GH VGD+++ + Sbjct: 282 DSLTGLLNRRGFHQALESALARIERSGQRVAVLYLDLDGFKRINDSLGHDVGDQLLRRVG 341 Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +QL + R+GG+EF A LG E +AA +A L +++ S + G Sbjct: 342 EQLKACLRPYDSLARIGGDEFTALLDNLGHPE-DAAKVAEKLIELV--SVRHTLDGVDFT 398 Query: 218 ITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259 + S GIA C E + ++ AD A+Y AK++GR + FS Sbjct: 399 LGASVGIA--CFPECGQSVEGLLRSADMAMYEAKRAGRQQYRFFS 441 >gi|312966728|ref|ZP_07780946.1| uncharacterized protein ydaM [Escherichia coli 2362-75] gi|312288192|gb|EFR16094.1| uncharacterized protein ydaM [Escherichia coli 2362-75] Length = 430 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAF--ISSLGSYN-----EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GLLN F I+ G + S++ D D FK IND +GH GD+V+ L+ Sbjct: 276 DAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALA 335 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF + A LA +R + ++++IS P Sbjct: 336 RTLESCARKGDLVFRWGGEEFVLLLPRTPLDTALSLAETIR--VSVAKVSISGLPRF--I 391 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 392 VSIGVAHHEGNESIDELFKRVDDALYRAKNDGRNRVLA 429 >gi|296282724|ref|ZP_06860722.1| putative diguanylate cyclase [Citromicrobium bathyomarinum JL354] Length = 348 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 9/159 (5%) Query: 101 SQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 ++ +R D L+GLLN + SL S E S+V FD+D FK IND FGH GD ++ Sbjct: 182 AERARRDPLTGLLNRHGLEGVMKSL-SRGEVFSLVCFDLDGFKPINDRFGHAAGDDLLCE 240 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +++++ + R+GG+EF G Q A + + + + + + Sbjct: 241 VANRMQSALAEGQVLARIGGDEFLVLLPGQGAQAAETVIQAVLAKVSGAPYAADAKSLVE 300 Query: 218 ITISAGIAERCHKEPISTII---YRADQALYVAKKSGRN 253 I ++AG A C+ + + I AD+ALY AK++G+ Sbjct: 301 IGVTAGFA--CYPDDATNIAELHVLADRALYAAKRAGKG 337 >gi|158425595|ref|YP_001526887.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571] gi|158332484|dbj|BAF89969.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571] Length = 549 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 98/197 (49%), Gaps = 15/197 (7%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSY 125 +I+ I LL+ + G++ +E +S R L+ D L+GL N +F L Sbjct: 338 VIAGAIVLLVLALQGALRREEKMSA-RFENLATTDWLTGLPNRRSFDERLIAAARSTARS 396 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAA 184 L+++ D+D FK +ND FGH GD+V+ +S L P V R GGEEFAA Sbjct: 397 AAPLALLMIDVDRFKVLNDRFGHGRGDEVLRQISQVLKACARRPDDMVARYGGEEFAAVL 456 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQ 242 G+ AA +A +R +E++ P + +T+S G A + T++ AD Sbjct: 457 PGTDAAGAARVAEAMRAAVEHA----FPSPDMTVTVSIGAASGTLAPETETRTLLAAADA 512 Query: 243 ALYVAKKSGRNRVVCFS 259 ALY AK GRNRVV S Sbjct: 513 ALYEAKAQGRNRVVLAS 529 >gi|21115005|gb|AAM42987.1| response regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575430|gb|AAY50840.1| response regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 349 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 85/179 (47%), Gaps = 19/179 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL ++Y + ++ D L+GL N A I ++ L ++ DIDYFK+ ND Sbjct: 171 ELRLAYAAVEAIAMQDSLTGLANRRQLDVVLPAEIKRAKRTSQPLGVIMVDIDYFKRYND 230 Query: 145 NFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +GHP GD K IA + G R GGEE L S +AA+LA R Sbjct: 231 YYGHPAGDLCIKAIANVLKNHTRRAGN--LAARYGGEEL--TVLLPSCDQAAVLAAAERI 286 Query: 202 I--IENSQINISSGPSIHITISAGIAERC--HKE-PISTIIYRADQALYVAKKSGRNRV 255 + I QI P ++T+S G +KE S ++ AD ALY AK++GRNR Sbjct: 287 VESIRGLQIAHDDSPEGYLTVSVGAYSYSAFNKEVDASGLLKCADDALYAAKQAGRNRA 345 >gi|77164365|ref|YP_342890.1| two component diguanylate cyclase [Nitrosococcus oceani ATCC 19707] gi|254433277|ref|ZP_05046785.1| GGDEF domain protein [Nitrosococcus oceani AFC27] gi|76882679|gb|ABA57360.1| response regulator receiver modulated diguanylate cyclase [Nitrosococcus oceani ATCC 19707] gi|207089610|gb|EDZ66881.1| GGDEF domain protein [Nitrosococcus oceani AFC27] Length = 327 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 14/176 (7%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145 L + ++ QL+ +D L+G+ N F ++ ++ LS++ DID FK ND Sbjct: 148 LEAANEQLRQLTSLDDLTGIANRRQFEVTIHQEFQRAMRNKTVLSLIMIDIDNFKVYNDI 207 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD + ++ L V P + R GGEEFA + + A+ +A LR+ +E Sbjct: 208 YGHQTGDSCLRRVAAALDSVLKRPNDLLARYGGEEFAVILPETGSKGASNIAESLRQAVE 267 Query: 205 NSQI--NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +I + +S ++ +T+S G+A + EP + +I ADQALY +K +GRN+V Sbjct: 268 ILKIPHSYASQNNLRVTVSLGVATLIPQRGDEP-TKLISIADQALYQSKHAGRNQV 322 >gi|53804274|ref|YP_114093.1| sensory box protein [Methylococcus capsulatus str. Bath] gi|53758035|gb|AAU92326.1| sensory box protein/GGDEF domain protein [Methylococcus capsulatus str. Bath] Length = 819 Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 16/174 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I QL+ D L+GL N F+ L + S++F D+D FK +ND GH VGD Sbjct: 389 IEQLAYFDPLTGLPNRRLFLERLNQAIGESCVNGSRCSLLFVDLDRFKHLNDARGHTVGD 448 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAI-----LANDLRKIIENS 206 +++ ++++L G V RLGG+EF G E+ E+A +A +LR I++ Sbjct: 449 QLLRKVAERLSEGVGRGGMVARLGGDEFVILLNGLDEEFESACRRTMDVAENLRVILQRP 508 Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +SSG ++T S G A + ++ AD A+Y AK SGRN V ++ Sbjct: 509 FV-LSSGQH-YVTASIGTAIYPFDTDSADDLLKAADMAMYEAKASGRNTVRAYA 560 >gi|81301343|ref|YP_401551.1| diguanylate cyclase with GAF sensor [Synechococcus elongatus PCC 7942] gi|81170224|gb|ABB58564.1| diguanylate cyclase with GAF sensor [Synechococcus elongatus PCC 7942] Length = 421 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 11/194 (5%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLGS 124 +++ + L + +LK L ++ R+ RID L+ + N F + G Sbjct: 219 VLLTQVAEQLSIAIAQSQLLKTLQVTNQRLQDQVRIDGLTQIPNRRRFDEYFNDVWLWGC 278 Query: 125 YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAA 182 + ++++ D+DYFK ND +GH GD+V+ + L VV V R GGEEF A Sbjct: 279 RDHTPVALLLIDVDYFKTYNDFYGHLAGDEVLRKIGLLLNSVVLRATDLVARYGGEEFVA 338 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCH--KEPISTIIYR 239 ++ + A +A L+ ++ QI + P + +T+S GIA ++ +I + Sbjct: 339 VLPSTTLEGAQAVARRLQADLQRLQIPHNHSPVAAWVTVSIGIAVTIPTIDVALTDLIDQ 398 Query: 240 ADQALYVAKKSGRN 253 AD+ALY AK +GRN Sbjct: 399 ADKALYEAKSAGRN 412 >gi|313899584|ref|ZP_07833093.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2] gi|312955691|gb|EFR37350.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2] Length = 439 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 15/187 (8%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------- 129 I ++LG ++ KEL + SR D L G N + +L S +K Sbjct: 256 NIKVVLGTMNDITEKELLKT-----SASR-DPLIGCFNRRSGDMTLVSTFQKFQNGEDFY 309 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +I+FFD+D FK++ND +GH +GD V+ + +Q+ + + R GG+EF G S+ Sbjct: 310 TIIFFDVDDFKKVNDRYGHDMGDYVLRHVCEQIEKEIRSSDMLFRWGGDEFLLICSGISK 369 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAK 248 + LR++IE+S I G + +T+S G A + + RAD+++Y AK Sbjct: 370 ENIYAYIERLRRLIESSDF-IFDGNRVQVTLSIGAAYYYKSDHDYQDALKRADRSVYKAK 428 Query: 249 KSGRNRV 255 +GRN+V Sbjct: 429 LAGRNKV 435 >gi|260773689|ref|ZP_05882604.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14] gi|260610650|gb|EEX35854.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14] Length = 411 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 77/167 (46%), Gaps = 22/167 (13%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+ L A L + +I D+D+FK ND +GH GD V+ ++ +L +V Sbjct: 241 DRLTQLPARHALDLDLQRLGKNFTIAMVDVDHFKAFNDTYGHETGDDVLKLVASRLRLVP 300 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--------------- 211 G R GGEEF G + ++A LR IE+ + I Sbjct: 301 GNGR-AYRYGGEEFTLLFKGKTAEQAKPHLEWLRHDIEHYDLVIRDTDTRPANHQEGSKK 359 Query: 212 ----SGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253 S+ ITIS GI + H EP S + + ADQALY AKK+GRN Sbjct: 360 RKRHKASSVTITISIGICD-SHVEPTSKSALTLADQALYNAKKAGRN 405 >gi|207722275|ref|YP_002252711.1| signal transduction transmembrane (partial sequence c terminus) protein [Ralstonia solanacearum MolK2] gi|206587452|emb|CAQ18034.1| putative signal transduction transmembrane (partial sequence c terminus) protein [Ralstonia solanacearum MolK2] Length = 201 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 13/170 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----------KLSIVFFDIDYFKQIND 144 + RI+ + D L+GLLN F ++L + E L+++ D+D FK IND Sbjct: 28 TVQRIAWDATHDVLTGLLNRRGFDATLRAQVEAHRGTRAAPRTPLALLMIDLDAFKAIND 87 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD V+ +++++V T RLGG+EFA Q A A+ +R + Sbjct: 88 CYGHAAGDDVLRGIAERVVQNTRTQDHAARLGGDEFAVILPNCDLQTAVTFADRIRAALA 147 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 + +++G I +S G+ E + + + R D A Y AK GRN Sbjct: 148 RQPV-LAAGARAQIALSQGVVELQADDADAAAFLARVDAACYRAKSEGRN 196 >gi|148980010|ref|ZP_01815831.1| sensory transduction/ GGDEF family protein [Vibrionales bacterium SWAT-3] gi|145961453|gb|EDK26757.1| sensory transduction/ GGDEF family protein [Vibrionales bacterium SWAT-3] Length = 440 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 20/155 (12%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS----DQLVVVFGTPMFVGRLGGEEF---- 180 +S + DID FK++ND FGH VGD VI L+ + ++ G VGR GGEEF Sbjct: 288 MSCLLLDIDDFKKVNDQFGHSVGDTVIRTLASIIKKHVKILNG---VVGRWGGEEFIVFF 344 Query: 181 ------AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC---HKE 231 A AL +SE +A+++ + + N Q + S + ++S G+ + C Sbjct: 345 PKSVTCHATALSNSESQASVVGERICEEFRNHQFIGFNRKSFNTSVSIGVTDSCIIRTSN 404 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 ++ +I D ALY AK +G+NRV ++ E C Sbjct: 405 SLNNLIRVTDDALYQAKSNGKNRVSVNTECECAGC 439 >gi|118579233|ref|YP_900483.1| diguanylate cyclase [Pelobacter propionicus DSM 2379] gi|118501943|gb|ABK98425.1| diguanylate cyclase [Pelobacter propionicus DSM 2379] Length = 249 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 18/244 (7%) Query: 29 IYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL--------SLVIISITISL 80 IY F A ++ I+++F Y L E LV+ L LV+ + L Sbjct: 4 IYVDEMFVGEAAEIMSISDVFPEYRQLRTMGFREGRLVDLLHFDPLITRKLVLRVEGMRL 63 Query: 81 LLGYISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSI 131 +G + ++ L +Y + ++ D L+G N A + S L++ Sbjct: 64 AMGASCAAHIRVRPLKSAYLHLRDMAHYDNLTGCFNRHAAGTVVRQEVERFSSLGLPLAL 123 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + D+D+FK+IND FGH GD V+ + + R GGEEF G+ ++E Sbjct: 124 LMADLDHFKRINDTFGHTSGDDVLKSFASLIRQGLRRSDLFCRWGGEEFLILLRGTLKEE 183 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A +A R+ I S + +T+S G A P+ +I AD ALY AK+ G Sbjct: 184 ALKIAERFRERI-ASALFPPFNERGAVTVSIGCACLPPGRPLERLIVDADCALYRAKQGG 242 Query: 252 RNRV 255 RNRV Sbjct: 243 RNRV 246 >gi|313500935|gb|ADR62301.1| Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida BIRD-1] Length = 708 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 15/159 (9%) Query: 107 DCLSGLLNHSAFISSLGS---YNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F + NE+ ++++ D+D FK+IND+ GH GD+V+ +++ Sbjct: 281 DPLTGLLNRRGFYQAAEGALLRNERSDKAQALMYMDLDGFKRINDSLGHDAGDRVLRWVA 340 Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +QL G+ + R+GG+EF A +L EQ L ++ + +++ G + Sbjct: 341 EQLKDCLGSEALLARMGGDEFTALFDSLPYPEQAGRYAERLLERVSISHEVD---GLDVC 397 Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +S GIA C + ++ AD A+Y AK++GR + Sbjct: 398 LGVSIGIATYPDCGAN-VEGLLRSADAAMYAAKQAGRQQ 435 >gi|229587759|ref|YP_002869878.1| hypothetical protein PFLU0183 [Pseudomonas fluorescens SBW25] gi|229359625|emb|CAY46467.1| conserved GGDEF domain protein [Pseudomonas fluorescens SBW25] Length = 335 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 2/130 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK +ND +GH GD+V+ +++ V GR+GGEEFAA G + Sbjct: 206 LAFLLLDIDDFKDVNDTYGHLEGDQVLRRIAESGRGVLRRGDLFGRIGGEEFAAVLPGCA 265 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247 + A +A L K I+ + G + +TIS G+A + + ++ RAD A+Y A Sbjct: 266 PEMALQVAERLGKEIQALSFSY-EGQAFSVTISQGLANLSEADSTLDSLFARADAAMYEA 324 Query: 248 KKSGRNRVVC 257 K+ G+NRV+ Sbjct: 325 KRLGKNRVIA 334 >gi|227823533|ref|YP_002827506.1| putative transmembrane GGDEF/EAL domain protein [Sinorhizobium fredii NGR234] gi|227342535|gb|ACP26753.1| putative transmembrane GGDEF/EAL domain protein [Sinorhizobium fredii NGR234] Length = 669 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 20/168 (11%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK- 153 +LS D L+GL N A L Y + D+D+FK+ ND +GH GD+ Sbjct: 232 RLSNTDSLTGLDNRRAVDQKLRDYWSDWQKKGTSFAAFLIDVDFFKKYNDFYGHQEGDRC 291 Query: 154 ---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-- 208 V + L D + G+ +GR GGEEF A + ++AA LA +R +EN + Sbjct: 292 LVLVASALKDSIEPYNGS---IGRYGGEEFIVLARMETSEQAAELAETIRCGVENLALEH 348 Query: 209 -NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 G SI +T+S G A + +I+ AD+ALY AK SGRN Sbjct: 349 GQRRDGMSI-VTVSVGAAFSRNQTGSKLERLIHEADRALYGAKASGRN 395 >gi|261342740|ref|ZP_05970598.1| signaling repeat/GGDEF domain/EAL domain protein [Enterobacter cancerogenus ATCC 35316] gi|288315393|gb|EFC54331.1| signaling repeat/GGDEF domain/EAL domain protein [Enterobacter cancerogenus ATCC 35316] Length = 694 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 109/222 (49%), Gaps = 15/222 (6%) Query: 44 FIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISG--SILKELFISYNR-I 100 F A+ L + G+ + + V LS++ I++ +S+L + S+L NR + Sbjct: 198 FPASTMLHHHGINGSWLAVLVSVIALSILGITLLVSILDARLQARTSLLASSLAEANREL 257 Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153 +QL+ D L+ L N LG K +++F D+D FK +ND +GH VGDK Sbjct: 258 AQLALQDTLTRLPNRLLLEDRLGQAISKADREGRHFALMFMDLDGFKTVNDAYGHDVGDK 317 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ ++ +L+ + R+GG+EF A +AA LA+ L + I++ + Sbjct: 318 LLVAVTQRLLQPLKGQYTLARIGGDEFVLLAETDGPDDAASLASALVRAIDSP---FALE 374 Query: 214 P-SIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253 P + +T+S GIA H +++ AD A+Y K GRN Sbjct: 375 PYELVVTLSIGIALYPHDGKTDRELMFNADAAMYHTKHMGRN 416 >gi|330888691|gb|EGH21352.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 359 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 19/232 (8%) Query: 31 FSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL-VIISITISLLLGYISG-- 87 S+FF FI V A I+L L + V++ L + I+ +LL G ++ Sbjct: 108 MSVFFVKFIDYVAAAALIWLIMWQ----TDLTAVGVDHAPLFYVFLISSTLLGGSLNATF 163 Query: 88 -SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVF--FDIDYFKQ 141 S++ + + +R +LS D L+ N A ++SL + ++K S+ F D+D FK Sbjct: 164 LSLVMQTMAASDRYQKLSETDTLTNAPNRRALVASLDNALTSDDKSSLWFAMLDLDNFKS 223 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 INDN GH VGD V+ + + G F GRLGGEEF S AA + Sbjct: 224 INDNHGHDVGDNVLICFATLIKNTTGLVSF-GRLGGEEFGVML---SAANAADAIAAMDH 279 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ ++Q + ++ + + SAGIA + ++ ++ AD+ LY AK+SGR Sbjct: 280 LLMHAQKDPTA--KMPYSFSAGIASLARAKNVNDLLKEADENLYHAKRSGRQ 329 >gi|298292470|ref|YP_003694409.1| diguanylate cyclase [Starkeya novella DSM 506] gi|296928981|gb|ADH89790.1| diguanylate cyclase [Starkeya novella DSM 506] Length = 634 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 8/178 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDN 145 E + RI L+ D L+GL N + F L + +++ D+D FK++ND Sbjct: 454 ERHRAEARIFHLAHHDPLTGLANRTLFSQRLQEAIARARVGLPGALLLIDLDRFKRVNDE 513 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 FGHPVGD ++ +++L RLGG+EFA G+++ E A A R + Sbjct: 514 FGHPVGDALLIAAAERLRGCLREGDLAARLGGDEFAVIQAGAAQPEGA-RALGARLVATL 572 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 G + + S G A + ++ +AD ALY AK GR R V F + EN Sbjct: 573 GAPYEIDGKHLDVRASVGTAVLGPDDDTQALMRKADVALYRAKDGGRARHVLFGE-EN 629 >gi|322418618|ref|YP_004197841.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] gi|320125005|gb|ADW12565.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] Length = 338 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 16/189 (8%) Query: 87 GSILKEL---FISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFD 135 G +L++L NR + L+ D L+G+ N F L S ++ LS++ D Sbjct: 146 GDLLEQLTSELAGKNRELEVLAHKDGLTGIANRRHFNEVLLSEIQRAVRNGRNLSLILCD 205 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAI 194 ID+FK+ ND +GH GDK + + + L F V R GGEEFA +S + A Sbjct: 206 IDHFKKFNDLYGHLAGDKCLQLVGELLRNSFKRAGEVVARYGGEEFAVILPDTSAELAGH 265 Query: 195 LANDLR-KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSG 251 LA LR +++ S ++ S + +T+S G+A K + I ADQALY +K++G Sbjct: 266 LAERLRLELMGQSLLHAHSEHKV-VTMSIGVAGGLAKWGRDMEWYITTADQALYRSKEAG 324 Query: 252 RNRVVCFSD 260 RNR+ D Sbjct: 325 RNRITVGGD 333 >gi|218549020|ref|YP_002382811.1| RNase II stability modulator [Escherichia fergusonii ATCC 35469] gi|218356561|emb|CAQ89184.1| modulator of Rnase II stability [Escherichia fergusonii ATCC 35469] gi|325497442|gb|EGC95301.1| RNase II stability modulator [Escherichia fergusonii ECD227] Length = 663 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140 SG+ + E ++ R+ L+ D ++GL N +A + + N ++ IV+ D+D FK Sbjct: 219 SGTDITEERVAQERLRVLANTDTITGLPNRNAIHELIDNAIVQTTNAQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA----LGSSEQEAAILA 196 ++ND +GH GD+++ ++ ++ + R GG+EF A G+ E A+ + Sbjct: 279 KVNDAYGHMFGDQLLQAVALAILSCLDNDQTLARHGGDEFIVLAPDTSQGALEAMASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR I + +G S+ I +S H ++I AD A+Y AK+ GR + Sbjct: 339 TRLRLPFRIGLIEVQTGCSVGIALSP-----LHGHDSDSLIRSADTAMYTAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|157164324|ref|YP_001467550.1| YbaK [Campylobacter concisus 13826] gi|112801081|gb|EAT98425.1| diguanylate cyclase (GGDEF) domain protein [Campylobacter concisus 13826] Length = 1361 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 6/157 (3%) Query: 107 DCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+ L N + L S +K+++++ D+D FK INDNFGH +GDK + +S+++ Sbjct: 843 DPLTKLPNRFLLYNKLNSLIQKNEQKIAVIYLDMDDFKSINDNFGHQIGDKFLVAISEKI 902 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 +F R+GG+EF + E +A ++ ++ + ++ I + + S Sbjct: 903 GAMFNGKNIFARIGGDEFVGVINYENLGEVYEIAQNMLRLASD-EVKIDE-LKLKASASV 960 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 GIA + ++ RAD A+Y AK SG+NR F Sbjct: 961 GIALADSELGADDVLQRADWAMYQAKISGKNRSYTFD 997 >gi|30249662|ref|NP_841732.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas europaea ATCC 19718] gi|30139025|emb|CAD85611.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Nitrosomonas europaea ATCC 19718] Length = 1128 Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148 S +++ L+ D L+GL N S L YN +++ ++ D+D FK +ND+ GH Sbjct: 690 SEAQLAHLAHYDPLTGLPNRLLVQSRLHHAVERAQRYNLRVATLYIDLDRFKNVNDSLGH 749 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQ 207 P+GD+++ L+++L + RLGG+EF + E+AI+A L ++ Sbjct: 750 PIGDELLIKLTERLKNRLREEDALARLGGDEFLLVMEDVKDPSESAIVAQTLIDLLATPF 809 Query: 208 INISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRN 253 + + SG I I S GI+ +T +I AD A+Y AKK GRN Sbjct: 810 V-LPSGHEIFINASIGISLFPDDASNATELIQHADMAMYQAKKEGRN 855 >gi|117918765|ref|YP_867957.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117611097|gb|ABK46551.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 581 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 12/238 (5%) Query: 25 HTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGY 84 H YF + +F+ F +FY G F L V + +++ ++ ++L++ Y Sbjct: 334 HPIAKYFLLGHCLFVG---FSGLAVMFYKGRAEFSYLSSHGV-GVGIMLEALVLALIIAY 389 Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEK-LSIVFFDID 137 +L+E+ S + + D L+ L N F I S ++ ++++ DID Sbjct: 390 -RIRLLEEIKASQEELKYQAATDSLTHLFNRRHFHKEAQRIYMQASVTQQPMAVIICDID 448 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK++ND +GH +GD+VI ++ L V R GGEEF S EA A Sbjct: 449 LFKRVNDKYGHLMGDQVIIDIATTLKQHARKCDIVARYGGEEFIMLLHDVSLTEAHQCAE 508 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +R + + + +T+S G+A P+ I AD ALY AK GRN V Sbjct: 509 RIRSAVAELSFMAETQEAFTVTLSLGVAAVDFVHPLEHAIKLADDALYRAKHQGRNNV 566 >gi|322640804|gb|EFY37453.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] Length = 674 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A +S E A+ + Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRIL 335 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390 Query: 257 CFS 259 FS Sbjct: 391 VFS 393 >gi|152995706|ref|YP_001340541.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1] gi|150836630|gb|ABR70606.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1] Length = 777 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 13/185 (7%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSI 131 +L L Y S + F + I+ ID L+GLL+ + I S +++L+ Sbjct: 316 ALFLAYYSRKLSLTYFSMLDSINNRIEIDELTGLLSRYQIQLELNELIVSCQEKDKQLAA 375 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + D+D+FK IND FGH +GDK++ +S +L + +G LGG+ F + S +Q Sbjct: 376 LILDLDHFKTINDAFGHELGDKLLVNVSKRLASILPDDAVIGYLGGDAFLVLLVQSDDQG 435 Query: 192 AAIL---ANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVA 247 +L A DL I + SQ G ++ I S G+A T+I AD A+Y A Sbjct: 436 VPVLDVFAKDL--IQKVSQSYFVDGLTLDIGCSIGVAMYPEFGTDAVTLIKNADMAVYQA 493 Query: 248 KKSGR 252 K +GR Sbjct: 494 KTAGR 498 >gi|150390686|ref|YP_001320735.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus metalliredigens QYMF] gi|149950548|gb|ABR49076.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus metalliredigens QYMF] Length = 716 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 7/166 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 I ++ D L+ L N + L ++N +I+ D+D FK+IND GH GDKV+ Sbjct: 283 IEHIAYHDDLTNLPNRRMLVEKLELEFTHNRSGAIMLLDLDNFKEINDTLGHVYGDKVLK 342 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPS 215 +++ L+ + G + V RLGG+EF L E++ + N RK+I+ S + Sbjct: 343 KVTEALLHIKGENLVVSRLGGDEF--LILIKEEEDILKIENYARKVIDLFSNKLLVEDDE 400 Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +++T S GIA + +S +I AD A+Y K G+N + F++ Sbjct: 401 VYLTCSIGIALYPSNSNSVSQLIMNADMAMYGVKGFGKNNYMFFNE 446 >gi|301059424|ref|ZP_07200345.1| putative Response regulator PleD [delta proteobacterium NaphS2] gi|300446460|gb|EFK10304.1| putative Response regulator PleD [delta proteobacterium NaphS2] Length = 312 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 20/181 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143 K L +Y +I LS D L+G N S IS Y +S+V DID+FK+IN Sbjct: 129 KSLKDAYEKIRLLSITDKLTGCYNRTYMDEYLSREISRATRYLRPISLVMTDIDHFKRIN 188 Query: 144 DNFGHPVGDKV----IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 D++GH GD + + ++ + L ++ R GGEEF + + A A L Sbjct: 189 DDYGHQAGDLILKNFVGWIKESLR---NDVDWIARYGGEEFLIVLPETDFESAMWSAERL 245 Query: 200 RKIIENSQINISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNR 254 RK + + + I IT S G+ + + P ++I +AD++LY AKK GRNR Sbjct: 246 RKSV-SENVTAYEDKDIRITASFGVVGFKPSAGNNTFPHESMIDKADKSLYQAKKEGRNR 304 Query: 255 V 255 + Sbjct: 305 I 305 >gi|326317066|ref|YP_004234738.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373902|gb|ADX46171.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 247 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 9/165 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+GL N F I + E ++ DID FK++ND GH GD Sbjct: 41 LCELSLKDPLTGLANRRHFRTVLEREIDRVTRAGEAALLLMLDIDNFKRVNDTHGHMAGD 100 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L + R GGEEFA ++A +R+ +E + + IS Sbjct: 101 IVLQSIARTLSRCVRPMDTLSRYGGEEFAVVLPACQAGFGKVVAERIRRAVERTPVRISP 160 Query: 213 GPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRV 255 +++T+S G A +T+++ RAD LY AK +GRNRV Sbjct: 161 TVELNVTVSIGGAFALQWIRSTTLLWTERADSQLYKAKLAGRNRV 205 >gi|239997118|ref|ZP_04717642.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126] Length = 518 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 77/167 (46%), Gaps = 20/167 (11%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 SR D L+ L N A+ L + K L++ DID+FK IND FGH GDK + Sbjct: 353 SRTDPLTRLPNRQAYNERLEAAFTKFKENGDLLAVAVVDIDHFKSINDRFGHAAGDKTLQ 412 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-- 214 +S L F+ R GGEEF L Q A D+ K + + +++ P Sbjct: 413 VVSKFLKQSLSENDFIARWGGEEF--VMLLPQAQMA-----DIDKKLNEVRTKLAAMPFK 465 Query: 215 --SIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVC 257 + I+A C + T+ RAD+ LY AK++GRN VV Sbjct: 466 FKQEKVKITASFGATCFNDNDTTETVFERADEYLYKAKRNGRNLVVT 512 >gi|218463161|ref|ZP_03503252.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5] Length = 521 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 79/164 (48%), Gaps = 12/164 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFKQINDNFGHPVGDKV 154 +LS D L+G+ N A L +E V F D+D+FK+ ND +GH GD+ Sbjct: 225 ELSNTDYLTGINNRRALDRRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRC 284 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 +A +++ L VV + +GR GGEEF A LA +R +E I Sbjct: 285 LAVIANLLKAVVESSGGMIGRYGGEEFIVVMPAEPPSVAMSLAERIRMEVEFLAIAHDER 344 Query: 214 P--SIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 P S +T+S G+A E + I+ AD ALY AK SGRN Sbjct: 345 PDDSAIVTVSIGVAFTSEDVGEKVERIVREADLALYNAKASGRN 388 >gi|157145666|ref|YP_001452985.1| hypothetical protein CKO_01413 [Citrobacter koseri ATCC BAA-895] gi|157082871|gb|ABV12549.1| hypothetical protein CKO_01413 [Citrobacter koseri ATCC BAA-895] Length = 410 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 76/162 (46%), Gaps = 19/162 (11%) Query: 107 DCLSGLLN-----------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 D L+GLLN H+ +S Y S++ D D FK IND +GH GD+V+ Sbjct: 256 DALTGLLNRRQFYLLTEQNHTPHLSMTMDY----SLLLIDTDRFKSINDLYGHLKGDEVL 311 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 L+ L V R GGEEF +S + A LA +R + +++ I P Sbjct: 312 CALARTLEARARKGDLVFRWGGEEFVLLLPRTSLEVALNLAESIRAAV--AKVCIPGLPR 369 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T+S G+A E I + R D ALY AK GRNRV+ Sbjct: 370 F--TVSIGVARHESNESIDELFKRVDDALYKAKNDGRNRVLA 409 >gi|254254953|ref|ZP_04948270.1| hypothetical protein BDAG_04275 [Burkholderia dolosa AUO158] gi|124899598|gb|EAY71441.1| hypothetical protein BDAG_04275 [Burkholderia dolosa AUO158] Length = 669 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNE-----KLSIVFFDID 137 SG + + ++ R+++L+ D L+GL N A I +L S ++ I+F D+D Sbjct: 220 SGIDITDERLAERRLTELANTDVLTGLPNRHAISERIQTLISRENDGTRGQVGILFLDLD 279 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193 FK++ND++GH GD+++ +S + + + RLGG+E F A E A Sbjct: 280 NFKRVNDHYGHITGDRLLQDVSSIIAGCLPSGATLARLGGDEFLVLFEQATRALLEATAQ 339 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I+ LR I + + + SI I + H + + T+I AD A+YVAK++G++ Sbjct: 340 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRSADTAMYVAKEAGKH 394 Query: 254 RVVCFS 259 FS Sbjct: 395 TYRVFS 400 >gi|117620650|ref|YP_857764.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562057|gb|ABK39005.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 468 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 17/163 (10%) Query: 101 SQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 S+ ++ D L+GL N + L + + DID FKQIND +GHPVGD V+ Sbjct: 312 SEKAQRDALTGLYNRRYMDTLLVELHQQHTPYVLAIIDIDNFKQINDKYGHPVGDSVL-- 369 Query: 158 LSDQLVVVFGTPMFVG-----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + G+ + G R GGEE A +EA R+ + Sbjct: 370 ---RRTASLGSKLLEGKATLCRFGGEELVAIFEQGRLKEAHQQMEQWRRAMGKQNWR--- 423 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + +T S G+AE P + ++ +AD ALY AK+ G++R+ Sbjct: 424 EPGLTVTFSGGLAEALDAPP-AQVLAQADAALYRAKQEGKDRL 465 >gi|32455652|ref|NP_862134.1| hypothetical protein pSV2_p041 [Streptomyces violaceoruber] gi|28797278|gb|AAO50125.1| hypothetical protein [Streptomyces violaceoruber] Length = 175 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 8/134 (5%) Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + S+ + +++V D D+FK +ND FGHP GD V+A +L G VGRLGG+EFA Sbjct: 14 MASHGDDMAVVMVDADHFKAVNDGFGHPAGDAVLAAFGARLTAWAGPRASVGRLGGDEFA 73 Query: 182 AAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIA--ERCHKEPISTII 237 E A IL L +++ ++ + + G ++ + S G A +S + Sbjct: 74 VVL----ELPAGILEQRLAQLVRMLHTPVVLEDGRTVDVAASVGAATPHAAGSRDLSLLQ 129 Query: 238 YRADQALYVAKKSG 251 AD ALY K +G Sbjct: 130 RAADAALYDGKHTG 143 >gi|82701763|ref|YP_411329.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis ATCC 25196] gi|82409828|gb|ABB73937.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosospira multiformis ATCC 25196] Length = 699 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 25/181 (13%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S RI L+ D L+GL N + F I + Y +L+++F D+D FK IND+ GH Sbjct: 252 SQERIEYLAHYDLLTGLPNRALFTDRMRIAIENASRYAFRLALLFVDLDRFKLINDSLGH 311 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF---------AAAALGSSEQEAAILANDL 199 +GDK++ +++++ V RLGG+EF A A +E+ A+L+ Sbjct: 312 AIGDKLLKAVAERMQSTVRQADTVSRLGGDEFVVLLGRIHTATEAARVAEKLIAVLSQPY 371 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + IE ++ +++ I I +G + +++++ AD ++Y AK GRNR +S Sbjct: 372 Q--IEQHELLLTASVGISIYPDSG-------KDVNSLMRNADVSMYSAKGQGRNRYQFYS 422 Query: 260 D 260 + Sbjct: 423 E 423 >gi|83593243|ref|YP_426995.1| response regulator receiver modulated diguanylate cyclase [Rhodospirillum rubrum ATCC 11170] gi|83576157|gb|ABC22708.1| response regulator receiver modulated diguanylate cyclase [Rhodospirillum rubrum ATCC 11170] Length = 519 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 8/138 (5%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS + D+D+FK+IND GH GD ++ L+D L + R+GGEEFA +S Sbjct: 383 LSGLMIDLDHFKRINDTQGHAAGDAILRTLADTLRESLREIDVIARVGGEEFAILLPDTS 442 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYRADQALYV 246 A + LR + Q GP +TIS GI+ H E + ++ RAD ALY Sbjct: 443 LTAAHEVGERLRLSCQIPQ--PVGGP---VTISVGIST-LHPEDRGLGDMLSRADDALYR 496 Query: 247 AKKSGRNRVVCFSDIENN 264 AK++GR+RV D E+N Sbjct: 497 AKRNGRDRVEIADDSEDN 514 >gi|34557894|ref|NP_907709.1| hypothetical protein WS1568 [Wolinella succinogenes DSM 1740] gi|34483612|emb|CAE10609.1| MLL1446 PROTEIN [Wolinella succinogenes] Length = 562 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+GLLN + + + EK ++ FD+D+FK+IND +GHP+GD+V+ L Sbjct: 409 DSLTGLLNRHGVLHFIQEHLEKEGFGVLIFDLDHFKKINDTYGHPIGDEVLRGFGLILSE 468 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAIL---ANDLRKIIENSQINISSGPSIHITIS 221 + +GR GGEEF L S +E+++L A +R+ ++ + + + +++S Sbjct: 469 GQRSEDAIGRWGGEEF---ILVLSTKESSVLHSIAERVRQRLKATAFSDGCQGTFRVSVS 525 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 G A E + RAD+ LY AK GR++ + Sbjct: 526 IGGAILREGESFEGVYERADKNLYQAKALGRDQSIV 561 >gi|325292659|ref|YP_004278523.1| Response regulator pleD [Agrobacterium sp. H13-3] gi|325060512|gb|ADY64203.1| Response regulator pleD [Agrobacterium sp. H13-3] Length = 456 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 + L ++ +L+ +D L+GL N + L +SI DID FK +N Sbjct: 278 EHLRLNLQHTMELAIVDGLTGLNNRRYLDNHLKILFDRAAVRGRPISICMTDIDRFKLVN 337 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH VGD+V+ + ++ R GGEEF + + A +A LR II Sbjct: 338 DTYGHDVGDEVLREFAARIRSTVRGADLACRYGGEEFVVVMPDTPMELATSVAERLRAII 397 Query: 204 ENSQINISS-GPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFS 259 E+ ++ S + IT S GIA P ++ +AD+ALY AK +GRNRVV + Sbjct: 398 EDKPFHVRSIDRELSITASLGIATSSGAFGAP-DELLKQADRALYEAKHTGRNRVVAAA 455 >gi|304398740|ref|ZP_07380611.1| diguanylate cyclase [Pantoea sp. aB] gi|304353687|gb|EFM18063.1| diguanylate cyclase [Pantoea sp. aB] Length = 527 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 9/153 (5%) Query: 107 DCLSGLLNHSAF--ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ L N F +++ + S++ DID+FK+IND +GH GD V+ L+ L Sbjct: 365 DPLTSLCNRRGFSVLAARSDSEHEQSVIAIDIDHFKKINDWYGHDAGDAVLVNLAALLRQ 424 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAG 223 + V R GGEEF ++ ++AA A +R++ ++I++ P + +TISAG Sbjct: 425 LSRIGDIVSRFGGEEFILLLPHTTLEDAARTAERIREV-----VSITTFPFAGTVTISAG 479 Query: 224 IAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 +A ++ RAD+ALY AK +GRN V Sbjct: 480 VASGAELAGNREAVLRRADEALYEAKAAGRNTV 512 >gi|302524637|ref|ZP_07276979.1| predicted protein [Streptomyces sp. AA4] gi|302433532|gb|EFL05348.1| predicted protein [Streptomyces sp. AA4] Length = 428 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 12/164 (7%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D +GL + + Y E+ + ++ D+D+FK IND +GHP GD V+ Sbjct: 260 ARTDVTTGLATKRWWRTVTERYLERARANQDSVGVLLLDLDHFKAINDTYGHPTGDLVLR 319 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L GR GGEEFA A S + +A+ +R+ I + + S Sbjct: 320 EIALSLRDEVREQDVCGRWGGEEFAIALPDIPSAEHLGHIADRIRRRIPQVVVALPDQDS 379 Query: 216 I--HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G A H + ++ AD ALY AK++GRNRV Sbjct: 380 VISDLTVSIGCALYPAEHLASVDDVLVAADAALYRAKQAGRNRV 423 >gi|300312078|ref|YP_003776170.1| hypothetical protein Hsero_2767 [Herbaspirillum seropedicae SmR1] gi|300074863|gb|ADJ64262.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 534 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 9/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +L R D L+G LN SL + L + D+D FK+IND GH G Sbjct: 359 QMGELVREDQLTGSLNRRGMDESLDREITNALRRDTPLCVALLDLDDFKRINDTHGHATG 418 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ + + + R GGEEF ++ Q+A + +++ + +I + Sbjct: 419 DEVLVHMVQVIRETLRKLDVIARFGGEEFLVLMPETAPQDAVQIITRVQREL-TKRIFMH 477 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + IT SAG+A E + ++ RAD ALY AK +G+NR+V F+D Sbjct: 478 ESQRLLITFSAGVAVYHPGESQADLLKRADVALYKAKNAGKNRIV-FAD 525 >gi|254457256|ref|ZP_05070684.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] gi|207086048|gb|EDZ63332.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] Length = 574 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 96/206 (46%), Gaps = 18/206 (8%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------S 116 I E + V+ IS L + KEL + + + D L+GL N S Sbjct: 109 IYQEKKAYVLFDTDISKL-----KKVQKELREQKDILHHQAHHDALTGLPNRILFNDRLS 163 Query: 117 AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 I +NE L++ F D+D FKQIND+ GH GD V+ S + + RLG Sbjct: 164 QGIKKSKRHNEILALFFIDLDQFKQINDSLGHDTGDVVLKEASRRFSSKIREEDTLSRLG 223 Query: 177 GEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK-EPI 233 G+EF+ A G E EA++LAN K IE I G ++++T S GI+ + Sbjct: 224 GDEFSVIAGGLKEASEASVLAN---KFIECMAEPIVVGAHTLYLTCSIGISFYPQDGQSA 280 Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259 ++ AD A+Y AK GRN +S Sbjct: 281 ENLLKYADVAMYKAKDEGRNNYQTYS 306 >gi|149375341|ref|ZP_01893112.1| serine/threonine kinase with two-component sensor domain [Marinobacter algicola DG893] gi|149360377|gb|EDM48830.1| serine/threonine kinase with two-component sensor domain [Marinobacter algicola DG893] Length = 1684 Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 6/134 (4%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAAA 184 + LS+V D+D+FK NDN+GH +GD+ + +++ L T M V R GGEEF Sbjct: 1546 QPLSVVMLDVDHFKHFNDNYGHQMGDECLIRVAETLQAQLQRSTDM-VARYGGEEFILIL 1604 Query: 185 LGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERC--HKEPISTIIYRAD 241 + E A +A + R IE I + S IT+S G A K + +++ AD Sbjct: 1605 PNTDENGAIQVAENARVAIEALDIRHDHSTARDCITVSVGCATIVPDDKSSLEELVFAAD 1664 Query: 242 QALYVAKKSGRNRV 255 ALY AK+SGRNR+ Sbjct: 1665 AALYKAKESGRNRI 1678 >gi|121608637|ref|YP_996444.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2] gi|121553277|gb|ABM57426.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2] Length = 352 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 10/181 (5%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFK 140 L G + E F + +SR D + +A + + L++V DID+FK Sbjct: 161 LTGLFNRKTFDEQFSRHALHGLVSRPDAAPPVFACNAHVLPGEPVQQWLAVV--DIDHFK 218 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND FGH GD+V+ +++ L F + V R GGEEF ++ A + N R Sbjct: 219 QVNDRFGHLYGDEVLILIANILRNSFRSHDRVFRFGGEEFVVLLRSTTLGTAHKVFNRFR 278 Query: 201 KIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ P + +T+S G P+ I+ +ADQALY AK+ GRN+ VCF Sbjct: 279 MAVQEYPF-----PQVGQVTVSLGFVSTARGAPVE-ILGQADQALYYAKEHGRNQ-VCFY 331 Query: 260 D 260 D Sbjct: 332 D 332 >gi|56750182|ref|YP_170883.1| hypothetical protein syc0173_c [Synechococcus elongatus PCC 6301] gi|56685141|dbj|BAD78363.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 712 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 3/129 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 E L+++F D+D FK INDNFGH VGD+V+ ++ ++ + RL G+EF Sbjct: 318 QEMLAVIFIDLDRFKDINDNFGHEVGDRVLVEVAQRIRQSVRQSDLIARLSGDEFVVILP 377 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQAL 244 + Q AA LA L++ I I I SI +T S GI+ + + +I +AD A+ Sbjct: 378 NTDAQGAATLAQKLQQQI-TPPIAIGDR-SIQLTTSLGISLFPVDGDDLEILIKKADTAM 435 Query: 245 YVAKKSGRN 253 Y K+ GR+ Sbjct: 436 YSIKEGGRD 444 >gi|109896943|ref|YP_660198.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109699224|gb|ABG39144.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 325 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 5/126 (3%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 K ++ D+D FK+IND GH GD V+A S + + + + R GGEEF GS Sbjct: 198 KACLLLIDLDEFKKINDQLGHACGDGVLAQTSALIEHMLTSEQHLYRFGGEEFVVLTDGS 257 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 EQ A L +R+ + + +HIT+S GIAE E + RAD A+Y A Sbjct: 258 LEQ-AITLGESIRQAVNDFPFE----QGLHITVSTGIAEYQFDETEFEWLGRADTAMYQA 312 Query: 248 KKSGRN 253 K +GR+ Sbjct: 313 KSAGRD 318 >gi|297569753|ref|YP_003691097.1| diguanylate cyclase with GAF sensor [Desulfurivibrio alkaliphilus AHT2] gi|296925668|gb|ADH86478.1| diguanylate cyclase with GAF sensor [Desulfurivibrio alkaliphilus AHT2] Length = 363 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 11/169 (6%) Query: 99 RISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + Q + D L+G+ N H +L S N S++ DID+FKQINDN+GH Sbjct: 195 KAQQEAMHDELTGIYNRRFLFDYAHKELCKNLRS-NAAFSLMLLDIDHFKQINDNYGHLY 253 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++ L + R GGEEFA ++ A L LR +E I Sbjct: 254 GDQVLRDMATTLKFKIRQSDVLARYGGEEFAVLLPNTAANAAFNLGEKLRLEVEKKGITP 313 Query: 211 SSGPSIH-ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +T++ G++ + + ADQ LY K +GRNR V Sbjct: 314 PGKTQLEKMTVTVGLSSFPADSNSLDQLFSVADQRLYKGKSAGRNRTVA 362 >gi|241766338|ref|ZP_04764225.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii 2AN] gi|241363525|gb|EER58974.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii 2AN] Length = 456 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 103 LSRIDCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N +AF SL E+ ++++F D+D FK +ND GH GD+V+ Sbjct: 288 LANHDSLTGLYNRAAFQGQLELSLARVREQGGAVALLFIDLDGFKLVNDQEGHRAGDEVL 347 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGP 214 ++ +L V RLGG+EF E L R+IIE Q + G Sbjct: 348 RIVAQRLGRAVREGDTVARLGGDEFLVMLDNDVSPEDPHLIG--RRIIEALHQPMVVDGR 405 Query: 215 SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 ++HI S G+A E I ++ RADQA+Y AK++G+ +C++ Sbjct: 406 NLHIGASIGVAMHPPLEGDIDVLMSRADQAMYAAKRNGKG-CLCYA 450 >gi|225871868|ref|YP_002753322.1| PAS domain S-box/GGDEF/EAL domain protein [Acidobacterium capsulatum ATCC 51196] gi|225794249|gb|ACO34339.1| PAS domain S-box/GGDEF/EAL domain protein [Acidobacterium capsulatum ATCC 51196] Length = 763 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 13/166 (7%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N ++ ++ + +++++ D+D FK INDN GH +GD + Sbjct: 318 ARHDPLTGLANRASMEDAVQQALAGADANGSQVAMICMDLDQFKWINDNHGHTIGDGFLR 377 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS-SGP 214 + +L P +GR+GG+EF SSEQ+A A L ++++ + G Sbjct: 378 AFAQRLKTAVTAPDLLGRVGGDEFLLLLRNVSSEQDA---AERLERVLKTLDKPLEVEGH 434 Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ ++SAG+A C + + AD ALY AK+ GR++ +S Sbjct: 435 TLRPSVSAGVAIYPCDSAHAADLRRHADHALYRAKEMGRDQYQFYS 480 >gi|254523661|ref|ZP_05135716.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] gi|219721252|gb|EED39777.1| Two component regulator three Y motif family [Stenotrophomonas sp. SKA14] Length = 987 Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 9/159 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+ L N F +L L +V DID+FK +ND H +GD V+ Sbjct: 826 AREDALTRLANRRGFDETLARDFARSQRSGHPLCLVVLDIDHFKDVNDRHSHSIGDAVLV 885 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + R GGEEFA + +EAA L LR + + + + P + Sbjct: 886 EVARLIAAASRDSDLPARTGGEEFALLLNDTRLEEAAQLCARLRGLFHDHP-DWAGVPGL 944 Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNR 254 +T SAG+ E + ++Y RAD+ALY AK GR+R Sbjct: 945 RVTFSAGLVELDADDRTPALLYQRADRALYRAKSDGRDR 983 >gi|145224404|ref|YP_001135082.1| diguanylate cyclase [Mycobacterium gilvum PYR-GCK] gi|145216890|gb|ABP46294.1| diguanylate cyclase [Mycobacterium gilvum PYR-GCK] Length = 358 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 104 SRIDCLSGLLNHSAFISS----LGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVI 155 S D L+GL N F S L + ++ L++ D+D FKQIND GH GD+++ Sbjct: 194 SHTDPLTGLRNRRGFYRSVRRLLRAAPDRDLNFLTVAMIDLDRFKQINDTRGHATGDRLL 253 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S L VGR+GGEEF A + + +A LA LR I ++ I++ Sbjct: 254 VSISGCLCHCARGEAVVGRVGGEEFLIAE-ATRDDDAEALAERLRLAIASTSWGITASVG 312 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + G A+ +E + +I AD A+Y AK+SG N+ Sbjct: 313 VACRRLNGDADT--RELLGDLIEAADSAMYEAKRSGGNQ 349 >gi|332702569|ref|ZP_08422657.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio africanus str. Walvis Bay] gi|332552718|gb|EGJ49762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio africanus str. Walvis Bay] Length = 684 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 15/173 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 E+ S ++ + D L+GL N + ++ + +K++++F D+D FK IND Sbjct: 245 EIKASQEKVRHQAHHDVLTGLPNRLLLKDRLATSLTHMARSGQKVALLFMDVDNFKHIND 304 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKI 202 + GHP+GD ++ ++ +L V V RLGG+EF AL E E +A +R + Sbjct: 305 SLGHPLGDLLLQAVAARLKEVMRDDDTVARLGGDEFVILVEAL---ESENLAIATAMR-L 360 Query: 203 IENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 +E ++ G ++ +T S GIA + T+I AD A+Y AK+ GRN Sbjct: 361 LEAFRVPFHIKGHALTVTPSVGIALYPDDGDDAETLIKNADMAMYRAKEKGRN 413 >gi|327479709|gb|AEA83019.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 376 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/250 (22%), Positives = 104/250 (41%), Gaps = 29/250 (11%) Query: 34 FFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL----------G 83 F++F+ IFI L ++ L+Y L + +++ S+LL G Sbjct: 117 MFAVFLPPKIFIRYASLAFLSFVGLAALDYYLERPMDTTALALQASVLLVTLIWMCLFAG 176 Query: 84 YISGSILKELFISY-------------NRISQLSRIDCLSGLLNHSAFIS------SLGS 124 ++ + Y ++ L+ D L+GL N F+ S Sbjct: 177 HVYRLRQRMRQRRYALQAHQDTLRGMMRQLEDLASTDELTGLYNRRRFLRIAEGDLSRLR 236 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 + + D+D+FK+IND GH GD+V+ + + R GGEEF Sbjct: 237 KGHQSGLALIDLDHFKRINDIHGHATGDRVLQTFAKVARSCLRDDDVLARYGGEEFVLLL 296 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + ++ LR+ +++ + + H+++S G+ + + + RAD+AL Sbjct: 297 PETDAEQFRACCERLREAFASAEPEDAEIAAGHLSLSIGLTLLNAGDELDAALQRADEAL 356 Query: 245 YVAKKSGRNR 254 Y AK++GRNR Sbjct: 357 YRAKRAGRNR 366 >gi|325519720|gb|EGC99040.1| diguanylate cyclase [Burkholderia sp. TJI49] Length = 229 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 13/161 (8%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N S F + E LS++ D+D+FK ND +GH GD + ++ Sbjct: 69 DGLTGAFNRSHFNDRFHTLFLQARRQREPLSLLMVDVDHFKAYNDAYGHVKGDACLVAIA 128 Query: 160 DQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 L V P V R GGEEFA + + A I+A + R+ + + + P + Sbjct: 129 HALAGVVRRPTDLVARYGGEEFAIVLPNTDARGARIVAEEARQAVLRLDL-VMPAPEGRV 187 Query: 219 TISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 ++S G A + +ST +I AD ALY AK GR+RVV Sbjct: 188 SVSVGCAT-VSSDALSTSDALIEAADAALYRAKADGRDRVV 227 >gi|323703953|ref|ZP_08115582.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574] gi|323531088|gb|EGB20998.1| diguanylate cyclase [Desulfotomaculum nigrificans DSM 574] Length = 465 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 16/166 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVG 151 +++Q + +D L+G +N F + L + NE S++ D D FK IND FGH +G Sbjct: 307 EKLAQAATVDFLTGAINRREFSRLFAELLAKNEPQAVHSVMALDFDSFKTINDTFGHAIG 366 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ + V V R GG+EF + A I+A +R N I+ Sbjct: 367 DECLKTFVQAAKDVIRPTDSVSRFGGDEFVLLLPYTPRAGAKIVAEKIR----NRLKEIA 422 Query: 212 SGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 + P TIS G+AE K+ ++ ++ ADQALY+AK+ G+NRV Sbjct: 423 NPP---FTISIGVAE-WPKDGMTEKDLLASADQALYMAKEKGKNRV 464 >gi|307300260|ref|ZP_07580040.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti BL225C] gi|307321137|ref|ZP_07600541.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83] gi|306893212|gb|EFN23994.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83] gi|306904426|gb|EFN35010.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti BL225C] Length = 664 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 12/164 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N A L Y + + + D+D+FK+ ND +GH GD+ Sbjct: 228 RLSHTDSLTGLDNRRAVDQKLRDYWSDWQRGGKSFAAILIDVDFFKRYNDFYGHQEGDRC 287 Query: 155 IAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NI 210 + +++ L +GR GGEEF A + ++AA LA +R +E + Sbjct: 288 LVLVANALKESIAPYDGSIGRYGGEEFIVLARLKTREQAADLAEAVRHSVETLALPHEQR 347 Query: 211 SSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G SI +++ AG + +I+ AD+ALY AK +GRN Sbjct: 348 RDGMSIVTVSVGAGFTRNQIGSKLERLIHEADRALYGAKANGRN 391 >gi|288958523|ref|YP_003448864.1| GGDEF domain-containing protein [Azospirillum sp. B510] gi|288910831|dbj|BAI72320.1| GGDEF domain-containing protein [Azospirillum sp. B510] Length = 388 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 4/128 (3%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 +S++ D+D+FK +ND GH VGD+V+ +D + +GR GGEEF G Sbjct: 250 RPVSMILADLDHFKSLNDLHGHWVGDEVLIGFADLARRSVRSIDLLGRWGGEEFIILLPG 309 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 ++ EA A LR +E+ ++ G T+S G+AE + T I AD ALY Sbjct: 310 TTVAEAVSTAERLRIQLES---HVFPGGQ-RATVSLGVAECRQGDSWETWIRNADTALYS 365 Query: 247 AKKSGRNR 254 AK +GRNR Sbjct: 366 AKATGRNR 373 >gi|242280344|ref|YP_002992473.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242123238|gb|ACS80934.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 482 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ Q + D L+GL N +F +S + + SI+ D+D FK++ND GH G Sbjct: 315 RLEQQADSDELTGLGNRRSFERFFESAVSGIKKKSGPFSIILLDVDGFKEVNDKCGHMEG 374 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS--QIN 209 D+++ +S + F R GG+EF G + A +A +R + ++ + Sbjct: 375 DRILKKISSIIRSCIRDSDFCARWGGDEFLLLVDGEVDL-AFDIAERIRTAVADACNEDL 433 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +SS +T+S G+A+ + + ++I RAD+A+Y +K G+++V+ Sbjct: 434 VSSDCGEIVTVSCGVAQYTDADTLDSLIVRADKAMYESKAQGKDKVI 480 >gi|157376441|ref|YP_001475041.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157318815|gb|ABV37913.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 514 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-----YNEKLS--IVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + +KL + DID+FK IND+FGH GDK Sbjct: 350 QKLNLLDSLTQLPNRAALEERMDQEFRNFQRQKLPLWVAVADIDHFKTINDSFGHSTGDK 409 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF + ++ L N +R+ +++ Sbjct: 410 TLQVIAMALKNSLRDTEFVARYGGEEFVLIIPDVNAEDIDHLLNRVREKVKSIPFKF-KN 468 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +T+S G A+ E I+ RAD ALY AK R+RV+ Sbjct: 469 QRITVTVSIGAAQILENELINETFERADAALYRAKHESRDRVI 511 >gi|134093842|ref|YP_001098917.1| hypothetical protein HEAR0589 [Herminiimonas arsenicoxydans] Length = 361 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 87/188 (46%), Gaps = 23/188 (12%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKL 129 +I LLL Y E + NR L+ D LS L N A +++ L Sbjct: 184 SIGLLLLYF------ERTVEENR--HLATHDELSKLFNRRAIVAAGERELYLSIRLQRDL 235 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +I F DID FK+ ND FGH GD VIA ++ L + VGR GGEEF G Sbjct: 236 AIAFIDIDLFKRFNDEFGHAAGDTVIAEVAAVLQQTCRSIDMVGRYGGEEFLVILPGVDS 295 Query: 190 QEAAILANDLRKIIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTIIYRADQALYV 246 Q A + L + + + IH +TIS G+A R + + ++ RAD ALY Sbjct: 296 QSAVQIGQRLVEAMREYRF-----LGIHPVTISIGMAILPRNAECSWAQLLRRADAALYE 350 Query: 247 AKKSGRNR 254 AK GR+R Sbjct: 351 AKNMGRDR 358 >gi|167035811|ref|YP_001671042.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166862299|gb|ABZ00707.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 568 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 15/161 (9%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N I S + +++ D+D FKQIND +GH +GD+++ ++ Sbjct: 131 DELTGLPNRFLLSKALDQAIVKAKSQSSTVAVGVLDLDGFKQINDRYGHEIGDRLLVAVA 190 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHI 218 D+L V RLGG+EF L S ++ +L + L++++ S + + G I+I Sbjct: 191 DRLKHSMRIEDTVARLGGDEF---VLISGVRDPKVLESALQRLLAALSAVYVIDGIGINI 247 Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 + S G+ + E T++ ADQA+Y AK+SGRN CF Sbjct: 248 SASIGVTLYPNDNENADTLLRHADQAMYKAKQSGRN---CF 285 >gi|154253246|ref|YP_001414070.1| diguanylate cyclase [Parvibaculum lavamentivorans DS-1] gi|154157196|gb|ABS64413.1| diguanylate cyclase [Parvibaculum lavamentivorans DS-1] Length = 236 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 10/183 (5%) Query: 78 ISLLLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEK 128 +S L Y S + EL ++ L+ D L+GLLN F S Y E Sbjct: 45 LSRALAYADESETRIVELTARIRQLEALAHTDELTGLLNRRGFDDVLRRNLLSAARYEEA 104 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 + D++ FK IND +GH GD+V+ + L + RLGG+EFA + + Sbjct: 105 GLFAYIDLNDFKSINDRYGHTAGDEVLRAVGSFLSRSIRATDYAARLGGDEFAILFVRAD 164 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 + A A ++ + I + +I+ S I +T S G+A + + +I RAD+A+Y K Sbjct: 165 HKRARERAREMLRGIADLEISCKS-HRISVTASLGLASYNGETCQADLIERADRAMYADK 223 Query: 249 KSG 251 KSG Sbjct: 224 KSG 226 >gi|94498629|ref|ZP_01305182.1| hypothetical protein SKA58_11253 [Sphingomonas sp. SKA58] gi|94421924|gb|EAT06972.1| hypothetical protein SKA58_11253 [Sphingomonas sp. SKA58] Length = 653 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 30/199 (15%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEK 128 I + L+G S+L E F +L+R D L+GL N A L N+ Sbjct: 192 IVVQALIGKRDKSLLAEKF------ERLARFDSLTGLENRMAMQMRLRDIFQTNEKRNDA 245 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 ++I++ D+D FK+IND+ GH VGD+++ ++++L V + R GG+EF + Sbjct: 246 VAILWMDLDRFKEINDSLGHMVGDQLLRAVAERLTEVVQGRGKIARFGGDEFVLICSDTD 305 Query: 189 EQEAAILANDLR-------KIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRA 240 AA +A ++ +I EN + +T S G A + ++ A Sbjct: 306 RVTAAGIAQEIVSYFAHGFEIGEN---------HLQVTASVGYAVGPQDGRDMDELMQHA 356 Query: 241 DQALYVAKKSGRNRVVCFS 259 D ALY AK GRNR F+ Sbjct: 357 DLALYEAKGQGRNRSASFN 375 >gi|66045221|ref|YP_235062.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63255928|gb|AAY37024.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 730 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 21/210 (10%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH--- 115 +G +L ++ + ++ T LL+ LK + +I L+ D L+GL N Sbjct: 245 HGAPLVLDISVEFITLNNTACLLMNARDIGALKN---AQAQIQHLAYHDPLTGLPNRALL 301 Query: 116 ----SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L Sbjct: 302 LDRLSQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDT 361 Query: 172 VGRLGGEEFAA--AALGSSEQEAAI----LANDLRKIIENSQINISSGPSIHITISAGIA 225 V RLGG+EF L S+ E LA++LR ++ ++ G + +T S G+ Sbjct: 362 VARLGGDEFVVLICGLEGSQDEVTRQVRELADNLRNLL--AEPMFLDGHRLQVTPSIGVV 419 Query: 226 --ERCHKEPISTIIYRADQALYVAKKSGRN 253 P + ++ RAD ALY AK GRN Sbjct: 420 LIPDDGLTP-ADLLKRADIALYRAKDCGRN 448 >gi|29142052|ref|NP_805394.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213424416|ref|ZP_03357229.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|29137681|gb|AAO69243.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 660 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A + + E A+ + Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 335 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390 Query: 257 CFS 259 FS Sbjct: 391 VFS 393 >gi|332530042|ref|ZP_08405992.1| hypothetical protein HGR_08964 [Hylemonella gracilis ATCC 19624] gi|332040515|gb|EGI76891.1| hypothetical protein HGR_08964 [Hylemonella gracilis ATCC 19624] Length = 577 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 99/191 (51%), Gaps = 16/191 (8%) Query: 81 LLGYISGSILKELFISY----NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKL 129 +LG IS +L++ ++ + I +++ D L+GL N ++S ++ Sbjct: 381 MLGAIS--VLRDNSVARKAAEDAIREMAYYDRLTGLPNRRLLEDRMQQVLASAQRRQTRV 438 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-S 188 +++F D+D FKQ+ND GH GD +++ ++ ++ V R+GG+EF + S Sbjct: 439 AVMFIDLDKFKQVNDRHGHEAGDWLLSEVAKRMRGVLRESDTAARVGGDEFVVLLPDTNS 498 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247 QEA ++A +R+ +E +N G + I+ S G+A + + +++ D+A+Y Sbjct: 499 PQEATLVAEKIRQQLEQPFVN-REGRVLEISSSIGVAMYPDQADNPRDLLHCGDEAMYWV 557 Query: 248 KKSGRNRVVCF 258 KK GRN V F Sbjct: 558 KKHGRNAVAVF 568 >gi|262275036|ref|ZP_06052847.1| extracellular solute-binding protein family 3/GGDEF domain protein [Grimontia hollisae CIP 101886] gi|262221599|gb|EEY72913.1| extracellular solute-binding protein family 3/GGDEF domain protein [Grimontia hollisae CIP 101886] Length = 463 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 22/174 (12%) Query: 99 RISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ + D L+GL+N S +S++ KL ++ D+D+FKQIND +GH Sbjct: 280 KLEDYAYTDSLTGLMNRRGLDRMYSSKRVSNMRKRG-KLGVLMLDVDHFKQINDKYGHLK 338 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENS 206 GD+V+ L L + V RLGGEEF A + E A + + L + Sbjct: 339 GDEVLNNLGGVLTDYVREAVAVARLGGEEFCLLLPAEDVRDLEVNADYVCSCLVPQASQT 398 Query: 207 QINISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 Q++ +H+T S G + + + +++ AD+ +Y AK++GRNRVV Sbjct: 399 QLD------LHVTASIGALLVDRESPETSLEALLHHADRLMYQAKEAGRNRVVV 446 >gi|255321703|ref|ZP_05362858.1| fog: ggdef domain protein [Campylobacter showae RM3277] gi|255301183|gb|EET80445.1| fog: ggdef domain protein [Campylobacter showae RM3277] Length = 421 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 21/178 (11%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQ 141 I+ + KE N I L+ D L+GL N + AF+ L + + +SI++ D+D FKQ Sbjct: 241 IARDVTKEYEYLQN-IEHLAHYDQLTGLANRNQLDAFLDKLKTTH--MSILYMDLDRFKQ 297 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILA 196 +ND GH GDK + +S+ + +F M V R+GG+EF A + S IL Sbjct: 298 VNDEHGHQAGDKALVAISELIKEIFNDAMNV-RIGGDEFISIFTDGANMQSIAPRVQILI 356 Query: 197 NDLRKII-ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252 + KI EN N +++SAGIAE + ++ RAD ALY AK +GR Sbjct: 357 DRFFKICQENPLFN-------GLSVSAGIAEGQIGHGSFDLLLQRADDALYRAKHAGR 407 >gi|229199474|ref|ZP_04326136.1| Sensory box protein [Bacillus cereus m1293] gi|228584002|gb|EEK42158.1| Sensory box protein [Bacillus cereus m1293] Length = 735 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVIFLDLDRFKKIND 354 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 355 RLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTALMKNADMAMYRAKANGKNRFVFFS 469 >gi|213586095|ref|ZP_03367921.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 565 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 121 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 180 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A + + E A+ + Sbjct: 181 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 240 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 241 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 295 Query: 257 CFS 259 FS Sbjct: 296 VFS 298 >gi|126669067|ref|ZP_01740000.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter sp. ELB17] gi|126626469|gb|EAZ97133.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter sp. ELB17] Length = 590 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 17/178 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-----GSYNEKL--SIVFFDIDYFKQINDNFGHPVG 151 RI QL+ D L+G+ N L ++ +L ++++ D+D+FKQIND GH VG Sbjct: 400 RIHQLAYYDALTGIPNRRLMDDRLEHAIRQTHRNRLGLAVLYIDLDHFKQINDTLGHHVG 459 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209 D ++ +++ + R GG+EF L E I L K E+ QI+ Sbjct: 460 DSLLLQFTERAQTCLREGDTLARFGGDEFVVILPELNGPEAAKTIAQRLLDKHREDYQID 519 Query: 210 ---ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 +S+G S+ I++ + + + ++ +AD A+Y AK++G N + F+D E+ Sbjct: 520 GHTLSAGASVGISLYSNEVDTARQ-----LLEQADAAMYTAKRAGGNAICLFTDAESQ 572 >gi|126462427|ref|YP_001043541.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rhodobacter sphaeroides ATCC 17029] gi|126104091|gb|ABN76769.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides ATCC 17029] Length = 833 Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 12/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++R D L+GL N F ++SL + ++++ D+D FK +ND GHPVG Sbjct: 393 QVFHMARHDMLTGLPNRHYFGDCYQEAVASL-TPERSVAVLMLDLDGFKTVNDTRGHPVG 451 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210 D+V+ ++++L + V RLGG+EFA SEQEA LA R I S+ Sbjct: 452 DQVLCEVANRLRTSVRSTDTVARLGGDEFAVIQTPIRSEQEACDLAR--RLIAAISKPFD 509 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + S GIA R + I+ AD ALY AK++GR F + Sbjct: 510 LEGAVPEVGASVGIAFARGRGDSAEEIMRYADVALYAAKQAGRGTFRVFDE 560 >gi|228988575|ref|ZP_04148662.1| Sensory box protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771192|gb|EEM19671.1| Sensory box protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 735 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 13/177 (7%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKKILNTAQTSAND-VAVMFLDLDRFKKIND 354 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 355 RLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414 Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 415 -NKPFFI-QGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVFFS 469 >gi|213647977|ref|ZP_03378030.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 663 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A + + E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|206901792|ref|YP_002251455.1| response regulator [Dictyoglomus thermophilum H-6-12] gi|206740895|gb|ACI19953.1| response regulator [Dictyoglomus thermophilum H-6-12] Length = 718 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 16/189 (8%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGS 124 VI I S + I G+ L + ++QL+ D L+ L N I Sbjct: 528 VIYEILRSQISAAIQGAKL------FEELNQLAITDPLTKLPNRRYIEAEFQKEIERSKR 581 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 Y+ LS++ D+D FK IND FGH GD V+ +++ L VGR GG+EF Sbjct: 582 YSSPLSVMVLDLDNFKIINDTFGHQYGDGVLKKIAENLRKYCRKVDIVGRFGGDEFVIIL 641 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242 ++ +++ +A+ + K +E I + +G ++I++S GIA K+P ++ AD Sbjct: 642 PETNLEKSIKVADKIIKNLEKMNITLPNGEKVYISVSIGIASYPETTKDP-EKLLSLADI 700 Query: 243 ALYVAKKSG 251 A+Y AKK G Sbjct: 701 AMYNAKKLG 709 >gi|51241737|dbj|BAD36773.1| di-guanylate cyclase [Gluconacetobacter xylinus] Length = 580 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 16/192 (8%) Query: 82 LGYISGSI-----LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------ 130 LG + G + + EL + +R+ L+ D L+GL N F + L + E S Sbjct: 115 LGAVEGYVATRFEITELMNTRDRLKSLAATDPLTGLFNRGGFNNMLQAAVEDKSQNITRD 174 Query: 131 --IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +V FD+D FKQIND GH GD V+ +S++L+ + V RLGG+EFA + Sbjct: 175 IMLVMFDLDGFKQINDIHGHHAGDVVLKVISNRLLALVHPEDAVCRLGGDEFALILNHTL 234 Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVA 247 + L L K++ + I G + ++++ S G++ +E ++ AD ALY A Sbjct: 235 HKYPLSLM--LEKLLAELEAPIEVGNTMVNVSGSIGVSPIASQESAESLQKNADIALYAA 292 Query: 248 KKSGRNRVVCFS 259 K++G ++ F Sbjct: 293 KRAGGHQARMFD 304 >gi|188583652|ref|YP_001927097.1| diguanylate cyclase [Methylobacterium populi BJ001] gi|179347150|gb|ACB82562.1| diguanylate cyclase [Methylobacterium populi BJ001] Length = 372 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 88/169 (52%), Gaps = 13/169 (7%) Query: 107 DCLSGLLNHSAFISSL----------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 D L+GL N +F +L G + S++ DID FK+ ND +GH GD+V+ Sbjct: 198 DALTGLGNRKSFEEALRRTVDASPTSGHGGKPTSLIVLDIDSFKRFNDLYGHLTGDQVLR 257 Query: 157 FLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGP 214 ++ + G T + R GGEEF + ++A +A +R + + + S+G Sbjct: 258 LVAIVMREHVGQTGATLARFGGEEFGIVLPETGLEDARAIAERVRNGVTGRELVKRSTGE 317 Query: 215 SI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 S+ +T+S G+A + + +++ RAD L+ AK++GRNR ++++ Sbjct: 318 SLGKVTVSLGVATQRGDDNAVSLLERADACLFAAKRAGRNRTYDETEVD 366 >gi|146297063|ref|YP_001180834.1| diguanylate cyclase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410639|gb|ABP67643.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 557 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 97 YNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPV 150 Y ++ ++ +D L+G N + + + N++ +SI FD+D FK++ND +GH Sbjct: 382 YQQMRSMAMVDGLTGAYNRIYLYEVLEKEIETSNKRYPISIALFDVDNFKKLNDTYGHLF 441 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDKV+ + V R GGEEF EA + +R+ IEN I Sbjct: 442 GDKVLQTIVRIAKEKIRKGDIVARYGGEEFVIVFNHLESSEAYKVVERIRRAIENETIE- 500 Query: 211 SSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + IT+S GI+ H + + +I AD A+Y AK SG+N V ++ Sbjct: 501 DNLIQTRITVSFGISSYPAHADNVKDLIKCADIAMYRAKSSGKNCTVIYN 550 >gi|117920751|ref|YP_869943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] gi|117613083|gb|ABK48537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] Length = 752 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 9/162 (5%) Query: 107 DCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +A S S S + D+D FKQ+ND +GH GD ++ + + Sbjct: 318 DPLTGLANRNALFRQIQELISADSLTPGFSFMLMDLDNFKQVNDTYGHDKGDALLVQVVE 377 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 Q+ RLGG+EFA G +++E + LA+ + K + + +S ++ + Sbjct: 378 QIKTCLNEQAVFARLGGDEFALLLPGLVTQRELSQLADKINKRV-YQRYELSHDKGVYSS 436 Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S GIA + ++ ADQA+Y++K GRNR F++ Sbjct: 437 VSIGIARFPEDALDLEQLLNCADQAMYISKADGRNRYHFFTE 478 >gi|298486840|ref|ZP_07004896.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158707|gb|EFH99771.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 525 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 10/172 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL ++ + ++R D L+ L N F ++ N ++++ DID+FKQ ND Sbjct: 328 ELSVARADLEIIARTDSLTHLANRRCFDATFQLEWERASRDNSSIALILLDIDWFKQYND 387 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD ++ ++ + P R GGEEF G+ A +A ++R I Sbjct: 388 CYGHLRGDDCLSQVAGLIGSGIKRPGDLAARYGGEEFVILLPGTDLTGALSVAEEVRLSI 447 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 EN+ I S+ P ++TIS+G+ E + + AD+ LY AK GRN Sbjct: 448 ENALIEHSASPLGNVTISSGVVAINALETEGYTAALREADRLLYCAKTRGRN 499 >gi|238917332|ref|YP_002930849.1| two-component system, PleD related family, response regulator [Eubacterium eligens ATCC 27750] gi|238872692|gb|ACR72402.1| two-component system, PleD related family, response regulator [Eubacterium eligens ATCC 27750] Length = 385 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 13/200 (6%) Query: 70 SLVIISITISLLLGYISGSILKELFISYN--RISQLSRIDCLSGLLNH---SAFISSLGS 124 + II LL+ Y ++ + ++ R S D L+GL N A I ++ Sbjct: 167 DVCIIQAATILLVAYQHNLAVQRVRVNMQLKRKKDYSEHDALTGLYNRRGLDARIKAIWP 226 Query: 125 YNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEE 179 + E+ ++++ D+DYFK+ ND FGHP GD+ + ++ L + V R GGEE Sbjct: 227 FCERNRLSVAMIAVDVDYFKKYNDTFGHPKGDECLKTVAGILKNSAQRSTDVVTRTGGEE 286 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAE--RCHKEPISTI 236 F E+ LA +R ++ I + G S ++T+S GIA + + Sbjct: 287 FIVFVQDMDEESLISLAMKIRNNLDQKHIEHAYYGVSKYVTVSMGIAGFVPAYNNDFKKL 346 Query: 237 IYRADQALYVAKKSGRNRVV 256 AD ALY+AKK+GRN +V Sbjct: 347 YQEADNALYLAKKNGRNCIV 366 >gi|237731656|ref|ZP_04562137.1| sensory box-containing diguanylate cyclase [Citrobacter sp. 30_2] gi|226907195|gb|EEH93113.1| sensory box-containing diguanylate cyclase [Citrobacter sp. 30_2] Length = 410 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 74/158 (46%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F + S + S++ D D FK IND FGH GD+V+ L+ Sbjct: 256 DALTGLLNRRHFYQVTEPEQTHAMSLTQDYSLLLIDTDRFKSINDLFGHLKGDEVLCALA 315 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + R GGEEF +S A LA +R + +++ + P T Sbjct: 316 RTLESCARKDDLIFRWGGEEFVLLLPRTSLDIALNLAEVIRATV--AKVTLPGLPR--FT 371 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 372 VSIGVARHETNESIDELFKRVDDALYKAKNEGRNRVLA 409 >gi|289807206|ref|ZP_06537835.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 544 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 100 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 159 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A + + E A+ + Sbjct: 160 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 219 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 220 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 274 Query: 257 CFS 259 FS Sbjct: 275 VFS 277 >gi|307153836|ref|YP_003889220.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306984064|gb|ADN15945.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 472 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 13/166 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+R+D L+G+ N F +L E LS++ D+DYFK+ ND +GH GD Sbjct: 293 LQRLARVDGLTGVANRLCFDETLAKEWQRCRREQEPLSLILCDVDYFKKYNDTYGHLKGD 352 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQI-N 209 + + ++ + P V R GGEEF LG++ E AI +A +++ ++ +I + Sbjct: 353 ECLIEIAKAISRAVKRPTDLVARYGGEEF-VIILGNTATEGAITVAKVIQEKVQQLKIPH 411 Query: 210 ISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253 ++ +IT+S G+A +S +I AD+ALY AK+ GR+ Sbjct: 412 QTAKDKNYITLSIGVASVIPYPKLSPKILIASADRALYEAKEQGRD 457 >gi|148261381|ref|YP_001235508.1| diguanylate cyclase [Acidiphilium cryptum JF-5] gi|326404870|ref|YP_004284952.1| hypothetical protein ACMV_27230 [Acidiphilium multivorum AIU301] gi|146403062|gb|ABQ31589.1| diguanylate cyclase [Acidiphilium cryptum JF-5] gi|325051732|dbj|BAJ82070.1| hypothetical protein ACMV_27230 [Acidiphilium multivorum AIU301] Length = 359 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 10/165 (6%) Query: 107 DCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+ + N AF + G+ +V FDID FK ND GH GD ++ + Sbjct: 193 DSLTAITNRRAFDTKARRFITQTRGAAPLVACLVLFDIDNFKWFNDVHGHQTGDLILRLV 252 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGPSI- 216 + L V R GGEEFA G+ + A +A + + + + + SSG + Sbjct: 253 ARLLSDSVKGRDTVARYGGEEFAVLLAGADLRSAISVARQICQSMADRKLVKRSSGQQLT 312 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +T+SAG+A+ E +++ + RAD ALY AK+ GRNRV D+ Sbjct: 313 QVTLSAGVAQFIGGENLASWVSRADAALYRAKELGRNRVCSELDL 357 >gi|307822126|ref|ZP_07652358.1| diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307736692|gb|EFO07537.1| diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 670 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 9/176 (5%) Query: 96 SYNRISQLSRIDCLSGLLNH---SAFISSLGSYNE----KLSIVFFDIDYFKQINDNFGH 148 Y++ + ++ID L+ L N + F++ + +E ++I F DID FK ND GH Sbjct: 491 QYDQQKKHAQIDHLTQLFNKRMLTNFLTEIFQGDESKLTNIAIGFVDIDKFKLFNDTCGH 550 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD + ++D L + F+GR GGEEF + + A A +R IE Sbjct: 551 QAGDDALKIVADILRSLTRPGDFIGRYGGEEFLFVLRNTDAKGAYGYAERIRSEIERRGK 610 Query: 209 NISSGPSIH-ITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ H +T+S G++ + +I ADQA+Y AK+ GRNR+V D+E Sbjct: 611 LMNQRFHGHLLTVSIGVSLYSADYTNYTDMIEAADQAMYQAKEEGRNRIVMLPDVE 666 >gi|262404616|ref|ZP_06081171.1| GGDEF family protein [Vibrio sp. RC586] gi|262349648|gb|EEY98786.1| GGDEF family protein [Vibrio sp. RC586] Length = 505 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 96/192 (50%), Gaps = 26/192 (13%) Query: 88 SILKELFISYNRI-SQL----------SRIDCLSGLLNHSAFISSLGSY-NEK----LSI 131 S +KE ++ NRI SQL S D L+ + N L S+ N++ L + Sbjct: 312 SEMKEFAVTINRIVSQLDESQQVLRWQSEHDPLTRISNRRHLEKQLKSFMNDRQYPHLVL 371 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSD--QLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 DIDYFK+ ND+FGH GD+ + +++ Q + FG + V R GGEEF S Sbjct: 372 YLIDIDYFKRFNDSFGHLAGDEALCSVANILQSLEFFGDKI-VARFGGEEFCVVLASESP 430 Query: 190 QEAAILANDLRKIIENSQINI-----SSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 +A A + + +Q+ I S+ S+ I+I A A E ++ ++AD AL Sbjct: 431 FDADRFAQQMHDKV--AQLAIANPVNSTFQSLTISIGAVYASSPQMESYLSLFHQADMAL 488 Query: 245 YVAKKSGRNRVV 256 Y AK+SGRNR V Sbjct: 489 YHAKESGRNRYV 500 >gi|228983830|ref|ZP_04144025.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775879|gb|EEM24250.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 568 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN CF Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRN-AACF 301 >gi|77460022|ref|YP_349529.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gi|77384025|gb|ABA75538.1| putative GGDEF domain protein [Pseudomonas fluorescens Pf0-1] Length = 553 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 20/186 (10%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQ 141 I K L + + Q++ D L+GL N F SL + +S++ DID+FK+ Sbjct: 360 IEKNLRKAQQALEQIATHDSLTGLANRRLFERSLEVEFARGARQSSPVSLIMLDIDFFKR 419 Query: 142 INDNFGHPVGDKVIAFLSDQLV--VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND +GH GD + ++ Q+V R GGEEFA + A +A + Sbjct: 420 YNDAYGHVAGDHCLTQVA-QVVKNCCQRKSDLAVRYGGEEFAVLLPDTDINGALAIAGQI 478 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCH------KEPISTIIYRADQALYVAKKSGRN 253 R+ + + I S P+ ++T+S G C+ + I RAD ALY AK +GRN Sbjct: 479 RRSVMDKHITHSGSPTGYLTVSLG----CYAFIPTGNDSPELFIQRADAALYQAKNAGRN 534 Query: 254 RVVCFS 259 R S Sbjct: 535 RAAVLS 540 >gi|50085216|ref|YP_046726.1| two-component response regulator [Acinetobacter sp. ADP1] gi|49531192|emb|CAG68904.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 410 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL + LS+ D L+GL N L ++ ++I+ DIDYFK ND Sbjct: 222 ELVKQAELLETLSQQDSLTGLANRRYLDEVLEKEWRRAVRHSTPITIMMIDIDYFKSYND 281 Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 + GH GD+ + ++ L + + R GGEEF ++E +A I L ++ Sbjct: 282 SLGHIKGDECLREIALALSTLTSRSGDLAARYGGEEFLLLFPMTNESDALIQVKRLMNVV 341 Query: 204 ENSQI-NISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNR 254 +N I + SS S +T+S G+A + IS I RAD ALY+AK +GRN+ Sbjct: 342 KNVGILHPSSDISSEVTLSVGVATIIPTLADTISAFITRADHALYMAKSNGRNQ 395 >gi|114763070|ref|ZP_01442500.1| diguanylate cyclase, putative [Pelagibaca bermudensis HTCC2601] gi|114544394|gb|EAU47402.1| diguanylate cyclase, putative [Roseovarius sp. HTCC2601] Length = 318 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N A + L E+ +++ D+D+FKQ+ND+ GH GD+V+ ++ ++ Sbjct: 156 DPLTGLGNRRAMDQLLQRLIRGGERFAVLHLDLDHFKQVNDSRGHAAGDRVLQAVARTML 215 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISA 222 + V R+GG+EF LG ++ E + LA L IE + I G + ++ S Sbjct: 216 DLTRKNDLVARIGGDEFVILPLGLTDHERLSDLARQLIARIEEP-VPIEDG-ACQVSASI 273 Query: 223 GIAERCHKEP----ISTIIYRADQALYVAKKSGRNR 254 GI+ P ++ ++ +AD ALY AK+ GR+R Sbjct: 274 GISLHDPDNPSPAGVAGLLAQADSALYAAKREGRSR 309 >gi|110835028|ref|YP_693887.1| GGDEF domain-containing protein [Alcanivorax borkumensis SK2] gi|110648139|emb|CAL17615.1| GGDEF domain protein [Alcanivorax borkumensis SK2] Length = 402 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 R+ +LSR D L+GL N F + + L+++ D+D FK ND +GH Sbjct: 222 ERLHRLSREDSLTGLANRRFFDEAFDREWRRCKRSQQPLTVMLVDVDRFKAYNDGYGHLQ 281 Query: 151 GDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + L+ +L V R GGEEFA + E EA LA+ L + + + I Sbjct: 282 GDSCLQKLAAELHRYSRRAGDLVARFGGEEFALLYPETDELEAQQLASRLCRSVRSLAIP 341 Query: 210 ISSGPSIH-ITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRN 253 + P ++ +T+S G+A + ++ ADQALY+ K+ GR+ Sbjct: 342 HADSPEMNEVTVSVGVATMIPNQRHSAGDLLEAADQALYLVKQGGRD 388 >gi|94499244|ref|ZP_01305782.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Oceanobacter sp. RED65] gi|94428876|gb|EAT13848.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Oceanobacter sp. RED65] Length = 596 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 15/224 (6%) Query: 39 IATVIFIANIFLFYIGL---TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFI 95 +A VI+ +FL + T +G++ +L + S+ S LL +K+L Sbjct: 360 VAWVIYAITLFLSALAALSNTIEWGMKPLLAAQFA----SLLESFLLALALIEKVKQLNS 415 Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDNFGHP 149 + ++Q S D L+ L+N + + ++E LS++ D D+FKQIND +GH Sbjct: 416 EISIVTQDSMRDELTQLVNRRFLNNKITQIFKHLRHDESLSLILIDADFFKQINDQYGHT 475 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGDKV+ L+D + + V R GGEEF ++ +A LR ++ Sbjct: 476 VGDKVLIHLADTIREMTRPQDVVARYGGEEFVMILRTFDQESVKTIAERLRHHVKTKPYK 535 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I +++S G+ ++ I Y AD ALY AK GR+ Sbjct: 536 -DEQYEITLSVSLGVCPIEGRDLTQAIQY-ADIALYHAKSIGRD 577 >gi|16125110|ref|NP_419674.1| GGDEF family protein [Caulobacter crescentus CB15] gi|221233837|ref|YP_002516273.1| CHASE4-family GGDEF/EAL protein [Caulobacter crescentus NA1000] gi|13422114|gb|AAK22842.1| GGDEF family protein [Caulobacter crescentus CB15] gi|220963009|gb|ACL94365.1| CHASE4-family GGDEF/EAL protein [Caulobacter crescentus NA1000] Length = 735 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 17/225 (7%) Query: 56 TPFYGLEYILVENLSLVIISI----TISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111 TP + + +L + + +++ + ++LL S I + L S R ++ D L+G Sbjct: 254 TPPHPGQRLLRKAVVPILLVVGGLAVVALLFARRSRRIAEGLVASEARAKHMAMHDALTG 313 Query: 112 LLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 L N F + L ++++ D+D FK +ND GH GD++I + +L Sbjct: 314 LPNRVLFEERLRQGVDGLSRRRGAMAVLAIDLDRFKAVNDTHGHAAGDELIQVIGARLAG 373 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 + + RLGG+EF A Q AA LA L + + +++S G ++ + S G+ Sbjct: 374 LCRASETLARLGGDEFGVVAAEIDPQGAAALAERLVAAL-AAPVDLSCG-TVFVGGSVGV 431 Query: 225 AERCHKEPISTII---YRADQALYVAKKSGRNRVVCFSDIENNTC 266 A E + RAD A+Y AK GR R CF + E + Sbjct: 432 AVITPDEAFVGAVEAARRADVAMYRAKDEGRGR-YCFFEAEMDAA 475 >gi|326317226|ref|YP_004234898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374062|gb|ADX46331.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1260 Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 17/176 (9%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL---------GSYNEKLSIVFFDIDYFKQINDN 145 + + + QL+ D L+GL N L G + +L + + D+D FK +ND Sbjct: 814 VQEDMLQQLAHFDALTGLPNRVQLARRLEQAMAQARAGGW--QLGVAYLDLDGFKPVNDR 871 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH GD+++ ++ +L V RLGG+EF L Q A LR+++EN Sbjct: 872 LGHSAGDRLLVIVAGRLTRALRPVDCVARLGGDEF--VLLMPELQSRADAEQLLRRLMEN 929 Query: 206 SQINISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCF 258 + G +T++A + + E S T++ AD A+Y AK+ GRNRV F Sbjct: 930 LAAPYTLGTE-RVTVTASVGYTLYPEDASDADTLLRHADHAMYGAKQGGRNRVQPF 984 >gi|260777776|ref|ZP_05886669.1| ammonium transporter [Vibrio coralliilyticus ATCC BAA-450] gi|260605789|gb|EEX32074.1| ammonium transporter [Vibrio coralliilyticus ATCC BAA-450] Length = 635 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 20/198 (10%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLS 130 +S+ Y+ S + + +++ +D L+G+ N + ++ + N+ + Sbjct: 439 LSMTYNYLLDSTNRHFREKERELLKMASLDPLTGVPNRRVYEQAIENTVKKSHEENKDFA 498 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSE 189 ++ D+DYFKQ ND++GH +GD + + L V + R+GGEEFA ++ Sbjct: 499 LLILDLDYFKQYNDHYGHQLGDYCLQNVCQALSSVTRRQHDILARIGGEEFAFILRDTNL 558 Query: 190 QEAAILANDLRKIIENSQINISSGPSIH-------ITISAGIAERCHKEPISTIIYRADQ 242 +A +A LRK +E +I P +H ++I + + P + + AD Sbjct: 559 HDARRIAELLRKEVEMLEI-----PHVHSECDFVTVSIGGAVWDMRINLPHTVLFDEADA 613 Query: 243 ALYVAKKSGRNRVVCFSD 260 AL+ AK+ GRN+VV FSD Sbjct: 614 ALFKAKELGRNQVVFFSD 631 >gi|254498378|ref|ZP_05111110.1| hypothetical protein LDG_2734 [Legionella drancourtii LLAP12] gi|254352400|gb|EET11203.1| hypothetical protein LDG_2734 [Legionella drancourtii LLAP12] Length = 412 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 8/167 (4%) Query: 100 ISQLSRIDCLSGLLNH---SAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S+L+ D L+ L N + F+S + L + DID FK+ ND + H GD Sbjct: 241 LSELTLHDPLTNLYNRRHLNEFLSRELIRIAREKNTLCVAMLDIDNFKKFNDTYSHLAGD 300 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + L+ F R GGEEFA + A + R+ ++N+ Sbjct: 301 EVLKLIGQLLLSDFRESDIPFRFGGEEFAVIFPNMTLDNAFDRMDQFREQLKNTIAYYKD 360 Query: 213 GPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 P ITIS GIAE H I II AD ALY AK++G++RV + Sbjct: 361 RPLPGITISIGIAEAPKHGATIEDIIKAADHALYAAKEAGKDRVKSY 407 >gi|213052592|ref|ZP_03345470.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 543 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 99 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 158 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A + + E A+ + Sbjct: 159 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 218 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 219 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 273 Query: 257 CFS 259 FS Sbjct: 274 VFS 276 >gi|168178633|ref|ZP_02613297.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum NCTC 2916] gi|182670303|gb|EDT82277.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum NCTC 2916] Length = 419 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 E I ++ Q++ D L+ L N ++F+ L L+I+F D+D FK++ND Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSKKKQSLLAIMFLDLDKFKEVND 303 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203 NFGH GDK++ ++ ++ + + R GG+EF + E++ LA D+ ++ Sbjct: 304 NFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLAMDIIEVF 363 Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I I G ++I S GI+ + H +I +AD+A+Y AKK G N+ + D Sbjct: 364 KEP-ICI-EGIYVNIKTSIGISFFPKDGH--TSQELIKKADKAMYDAKKRGSNKFQIYKD 419 >gi|94987046|ref|YP_594979.1| PleD [Lawsonia intracellularis PHE/MN1-00] gi|94731295|emb|CAJ54658.1| PleD [Lawsonia intracellularis PHE/MN1-00] Length = 360 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 23/248 (9%) Query: 32 SIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITI---SLLLGYISGS 88 SIFF I +IF +F+ Y + + +EY+ +N + I TI ++ + + Sbjct: 117 SIFF-FAIPYIIFY--LFVIYPFINLCHTIEYLYSKNSNKKIFKTTIFEFKKIISIVQKN 173 Query: 89 ILK--ELF-------ISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSIVFFDID 137 I+K EL+ I +++ ID +GLL+ + L Y L+I+ DID Sbjct: 174 IIKQQELYHKLQITKTEKKYIQRINSIDYTTGLLDKKCINTYLSKYLGYSVLTILMIDID 233 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILA 196 +FK ND FGH GDK +A ++ + V R GGEEF A ++ A I+A Sbjct: 234 HFKAYNDTFGHVAGDKCLAAVARCIKNALKRKEDIVFRYGGEEFIALLPNTAISGAHIVA 293 Query: 197 NDLRKIIENSQI-NISSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGR 252 + + +I N +S +T+S GI E H PI ++ AD ALY AK +GR Sbjct: 294 QRIHNSLTQMKIPNTTSTVYPFLTVSIGINEVLPYKHTTPIDA-VHHADIALYTAKHNGR 352 Query: 253 NRVVCFSD 260 ++ S+ Sbjct: 353 SQTAVHSN 360 >gi|89094570|ref|ZP_01167508.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92] gi|89081169|gb|EAR60403.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92] Length = 888 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 91/170 (53%), Gaps = 12/170 (7%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + + D L+GL N +A + S + +++++++ DID FK +ND FGH VG Sbjct: 444 KLYKQANFDPLTGLPNRRRAHENLTAELQSAWKHKQQVAVLYLDIDNFKNVNDTFGHMVG 503 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ +S +LV + + G+EF A +SE + LA +KI+++ Q + Sbjct: 504 DQLLQLVSARLVKCCKDLANICHISGDEFLVYARYASESDIRKLA---QKILDDVQTPVL 560 Query: 212 -SGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G I +++S GI+ ++ ++ AD ALY +K+ GRNR F Sbjct: 561 IEGKQIFVSVSIGISRYPEDNNDVTGLVKFADIALYESKREGRNRYSFFD 610 >gi|311032207|ref|ZP_07710297.1| ggdef domain protein, putative [Bacillus sp. m3-13] Length = 352 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 107 DCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ L NH +F L EK + DID FK IND +GH GDKV+ + + L Sbjct: 196 DYLTNLANHRSFQECLRKDLEKEKEFYLALTDIDKFKLINDQYGHVTGDKVLRQIGEILT 255 Query: 164 VVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 V R GGEEFA +E E + +++++ + S + G + +T+S Sbjct: 256 SVLSNKQGKAFRYGGEEFALILYYKNEWEVKEILDEIKQAVA-SYVFYDKGETFSVTMSF 314 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G ++ + P ++ + D+ LY AK GRNR++ Sbjct: 315 GSGKQDGERP-DLLVDKVDKLLYTAKNGGRNRII 347 >gi|289825184|ref|ZP_06544492.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 471 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A + + E A+ + Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 335 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390 Query: 257 CFS 259 FS Sbjct: 391 VFS 393 >gi|209524466|ref|ZP_03273015.1| diguanylate cyclase [Arthrospira maxima CS-328] gi|209495257|gb|EDZ95563.1| diguanylate cyclase [Arthrospira maxima CS-328] Length = 724 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 23/181 (12%) Query: 93 LFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQIND 144 L +YNR + ++S D L+G N L +K S++ DIDYFK+IND Sbjct: 548 LLQTYNRKLEKISVTDPLTGCFNRLKIEKCLQEQESLFHRNGQKFSVILCDIDYFKKIND 607 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLR 200 FGH GD V+ ++V +F + +GR GGEEF + + A LA LR Sbjct: 608 TFGHLPGDAVLI----EMVALFHQRLRKTDILGRWGGEEFIIISPQTDLWGAKALAEALR 663 Query: 201 KIIENSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + + + P++ + T S G+AE IS +I + D+ALY AK+ GRN + + Sbjct: 664 QDLASHKF-----PTVGYQTASFGVAEFHSGNYSISHLISQVDEALYKAKERGRNCAIAY 718 Query: 259 S 259 Sbjct: 719 Q 719 >gi|167615854|ref|ZP_02384489.1| GGDEF domain protein [Burkholderia thailandensis Bt4] Length = 504 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 10/178 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQI 142 L++ + +R+ +LSR D L+GL N A +L S +L SI+F D D+FK+ Sbjct: 319 LRDRTAARDRLLELSRTDPLTGLGNRRALDDALQSEWARLQRNDSCLSILFIDADHFKRY 378 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND GH GD + L+ + G + R GGEEF A + E AA +A +R Sbjct: 379 NDAHGHTQGDLALKRLAACIARHAGRSGDLAARYGGEEFVAILPDADEAAAARIAESIRA 438 Query: 202 IIENSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I ++ ++ P T+S G A R + + AD ALY AK GR+R V Sbjct: 439 GIRDATRAGATPPIPRFTVSVGCATARRGAHASLDAFVRAADDALYRAKADGRDRTVA 496 >gi|153003013|ref|YP_001377338.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] gi|152026586|gb|ABS24354.1| diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] Length = 288 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 10/158 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N AF ++ L+ + D+D+FK++ND +GH GD V+ ++ Sbjct: 132 DPLTGLANRRAFEEALAREVARAAREGGPLAAIALDVDHFKRVNDGYGHAAGDAVLVEVA 191 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHI 218 + + R+GGEE AA G++ + AA A +R + + I++G + + Sbjct: 192 ARAAQGLRASDLLARVGGEELAALLPGATLEAAAEAAERIRARVAGAP--IAAGELRLRV 249 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+SAG A E +T++ RAD LY AK++GR+RV Sbjct: 250 TLSAGCAALGPGEDGATLLARADARLYEAKRAGRDRVA 287 >gi|77747957|ref|NP_639075.2| response regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|77761313|ref|YP_244860.2| response regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 501 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 85/179 (47%), Gaps = 19/179 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQIND 144 EL ++Y + ++ D L+GL N A I ++ L ++ DIDYFK+ ND Sbjct: 323 ELRLAYAAVEAIAMQDSLTGLANRRQLDVVLPAEIKRAKRTSQPLGVIMVDIDYFKRYND 382 Query: 145 NFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +GHP GD K IA + G R GGEE L S +AA+LA R Sbjct: 383 YYGHPAGDLCIKAIANVLKNHTRRAGN--LAARYGGEEL--TVLLPSCDQAAVLAAAERI 438 Query: 202 I--IENSQINISSGPSIHITISAGIAERC--HKE-PISTIIYRADQALYVAKKSGRNRV 255 + I QI P ++T+S G +KE S ++ AD ALY AK++GRNR Sbjct: 439 VESIRGLQIAHDDSPEGYLTVSVGAYSYSAFNKEVDASGLLKCADDALYAAKQAGRNRA 497 >gi|218708995|ref|YP_002416616.1| GGDEF family protein [Vibrio splendidus LGP32] gi|218322014|emb|CAV18050.1| GGDEF family protein [Vibrio splendidus LGP32] Length = 488 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 10/162 (6%) Query: 101 SQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 +L+ D ++GLLN AF S+ +++ ++ FDID FK IND FGH GD VI + Sbjct: 330 KELAAKDPMTGLLNRRGLEAFWRSV-EHDQLFALTVFDIDNFKLINDTFGHDKGDDVIRY 388 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +S Q+ + R GGEEF G + ++ + + NI Sbjct: 389 MSRQISNSIRSSDVAARFGGEEFVVYLKGDDRETLMRTLERVKNAVCANSANIVPNG--- 445 Query: 218 ITISAG--IAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 T+S G I E H I AD+ LYVAK +G++R+V Sbjct: 446 FTVSGGVCITEVEHNNLSFEEIFKHADEKLYVAKTTGKDRIV 487 >gi|169829655|ref|YP_001699813.1| inner membrane protein [Lysinibacillus sphaericus C3-41] gi|168994143|gb|ACA41683.1| Inner membrane protein [Lysinibacillus sphaericus C3-41] Length = 505 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 107/217 (49%), Gaps = 11/217 (5%) Query: 52 YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSG 111 Y+ F +E L +N + +TI+L+ ++ ++ ++ ++ L+ D L+G Sbjct: 285 YVKYANFTKME-ALQKNTKQFWVLLTIALITAFVMLLVINKIL---SKTIHLATFDPLTG 340 Query: 112 LLNHSAFISSLGSYNEKLSI-----VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 + N + +I + S +K + + D+D FKQ+ND FGH GD+++ + L V Sbjct: 341 VYNRATYIRKMDSLLKKRKLNRPGLLLIDLDNFKQVNDQFGHAEGDQILIGTAKILKKVV 400 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-TISAGIA 225 FV R GG+EFA ++E +A+ + I ++ + + ++S G A Sbjct: 401 KKDGFVVRFGGDEFAMVLYDTTEHHMQQVADAILTQIRTLKLEDHAIQKWSVLSVSMGGA 460 Query: 226 ERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDI 261 H E ++ RAD+ALY +K +G+++ F ++ Sbjct: 461 IYHHPEDSEMSLFERADRALYQSKNAGKDQYSSFVEV 497 >gi|95928668|ref|ZP_01311415.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95135458|gb|EAT17110.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 284 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 21/197 (10%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK---- 128 I +T+ LL + + + + Y I +D L G+ N L S +K Sbjct: 81 IFVLTVCLLSARTADDVTRLCHLEYENI-----LDPLLGIYNRRHMDRCLRSEADKTRRY 135 Query: 129 ---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 LS++ D+D+FK++ND +GH VGD+V+ L+ + V R GGEE Sbjct: 136 ALDLSVLLIDVDFFKKVNDTYGHLVGDRVLLALAQMIKGSVRDFDMVFRYGGEEIMVLLP 195 Query: 186 GSSEQEAAILANDL------RKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIY 238 ++ A L + L R ++E +++ ++ +TIS G++ E ++ Sbjct: 196 YTNSSGAQTLGSRLCQWVSERSLLE--EVHQGQPVNVQVTISIGVSTFDPAVEDEGEMVA 253 Query: 239 RADQALYVAKKSGRNRV 255 RAD ALY AKK+GRNRV Sbjct: 254 RADMALYRAKKNGRNRV 270 >gi|324114202|gb|EGC08175.1| diguanylate cyclase domain-containing protein [Escherichia fergusonii B253] Length = 570 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 11/202 (5%) Query: 69 LSLVIISITISLLLGYIS-GSILKELFISYNRISQLSRIDCLSGLLNHSA------FISS 121 L+L+ T L++ +I ++ +F+ + + + D L L N A F++ Sbjct: 362 LTLLWALFTTMLIISWIVIRKMVSNMFVLQSSLQWQAWHDTLIRLYNRGALFEKARFLAQ 421 Query: 122 LGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 N++ S++ D+D+FK IND FGH GD+V++ + + GR+GGEEF Sbjct: 422 ECRENQRPFSVIQVDLDHFKSINDRFGHQAGDRVLSHAAGLISRSLRAQDVAGRVGGEEF 481 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIY 238 ++ +A +A +R + +I I+ ++ I+ S G++ E + Sbjct: 482 CIVLPCANLAQAQEIAERIRLRLNEKEILIARSTTLRISASLGVSSTEETGDYDFEQLQS 541 Query: 239 RADQALYVAKKSGRNRVVCFSD 260 AD LY+AK++GRNR VC SD Sbjct: 542 LADGRLYLAKQAGRNR-VCASD 562 >gi|323497240|ref|ZP_08102260.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] gi|323317815|gb|EGA70806.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] Length = 411 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 32/241 (13%) Query: 35 FSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELF 94 F+I +A++ I ++ ++ L Y + +S ++ S++ LLL Y+ + Sbjct: 180 FAICVASMNRIIDVVVYSAALLASITFVYFHIPYISSMMFSLSGILLLIYLFSA------ 233 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 SY +L+ D L+ + A + L ++ +I DID+FK ND +GH GD V Sbjct: 234 -SY----ELAFKDRLTDIPGRLALENDLRYLGKRYTIAMIDIDHFKSFNDTYGHDTGDDV 288 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---- 210 + ++ ++ + G + R GGEEF G ++A LR IE+ ++ I Sbjct: 289 LRLVASKMKGIGGGAR-IYRYGGEEFTVLFKGKDAEQARDHLEILRTSIESYEMIIRDQD 347 Query: 211 ----------------SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 G ++ITIS G+ + + +S ++ +AD+ALY AK GRN+ Sbjct: 348 NRPKDSKLGAQKRKRTKDGEIVNITISIGVCDSREVKEVSAVMKQADEALYKAKSLGRNQ 407 Query: 255 V 255 V Sbjct: 408 V 408 >gi|315180370|gb|ADT87284.1| GGDEF family protein [Vibrio furnissii NCTC 11218] Length = 382 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 87/181 (48%), Gaps = 12/181 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEK------LSIVFFDIDYFKQIN 143 ++L + ++ LS D L+ L N + L +Y NE L + D DYFKQ+N Sbjct: 193 QQLMQANRQLEALSMTDSLTALPNRRKAMRQLEAYWNESQQQGLPLVCIMIDADYFKQVN 252 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D+ GH GD+V+ L+ L F + V RLGG+EF + +A R+ + Sbjct: 253 DSCGHDAGDRVLMALAYTLKHAFRSDDLVCRLGGDEFLVICPNTDLDGGVHIAELTRQQV 312 Query: 204 ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 N + P +IS G+AE H +I AD A+Y AKK+G+NR VC + Sbjct: 313 NNLLVPTGMEP-WRGSISVGVAE-SHGFMNDHHALIKLADTAVYRAKKAGKNR-VCVAQF 369 Query: 262 E 262 E Sbjct: 370 E 370 >gi|56459537|ref|YP_154818.1| signal protein [Idiomarina loihiensis L2TR] gi|56178547|gb|AAV81269.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL domains [Idiomarina loihiensis L2TR] Length = 712 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 98/211 (46%), Gaps = 28/211 (13%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNR-------ISQLSRIDCLSGLLNHSAFISSL 122 S+ I I LLL ++ + + L + +R I + D ++ L N AF+ L Sbjct: 247 SIYWIIIVAGLLLSFLMTAFMYNLVTAQSRLRSALVTIDHQAHFDSITDLPNRRAFVDYL 306 Query: 123 GSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 +K +I+F D+D+FK++NDN GH GD+++ +SD+L F+ R+GG Sbjct: 307 DQLTQKGREQHFAILFIDLDHFKEVNDNLGHDAGDELLVSVSDRLRNQLRGSDFIARIGG 366 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP------SIHITISAGIAERCHK 230 +EF + + + NDL SQIN S P I T S GIA Sbjct: 367 DEFVVVINRFTSHQ---IINDL-----ASQINRQLSEPFNLRQNQIQTTCSIGIALYPDD 418 Query: 231 E-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 S ++ AD A+Y AK +GR F+D Sbjct: 419 GIKASELLKNADLAMYAAKTAGRRTHYFFND 449 >gi|16760177|ref|NP_455794.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25318946|pir||AI0655 conserved hypothetical protein STY1349 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502472|emb|CAD01618.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] Length = 660 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 216 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 275 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A + + E A+ + Sbjct: 276 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 335 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 336 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 390 Query: 257 CFS 259 FS Sbjct: 391 VFS 393 >gi|3392922|emb|CAA04444.1| hypothetical protein [Lactococcus lactis subsp. lactis] Length = 239 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 19/188 (10%) Query: 84 YISGSILKELFISYNRISQLSRI------DCLSGLLNHSAFISSLGSYNEK---LSIVFF 134 Y+ +IL +F+ Y I+ + ++ D L+ + N S F + L +K S+ Sbjct: 55 YVISTIL--VFVLYYMINDIKKMQKKATHDYLTKMKNRSEFQAKLEVLQKKKKIFSLAIL 112 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DIDYFK ND+F H VGD V+ +S L+ G + R+GGEEF +L E Sbjct: 113 DIDYFKVFNDSFNHLVGDLVLLEVSKVLLSFEGNKINCYRIGGEEF---SLVFEEINFVE 169 Query: 195 LANDLRKI-IENSQINIS----SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 + N L KI + +INI G IT+S G++ I I AD ALY AK+ Sbjct: 170 VENKLEKIRLAVQKINIDEMLLDGEVRGITVSIGVSHIKTFSNIENYISSADDALYKAKE 229 Query: 250 SGRNRVVC 257 +GRN++V Sbjct: 230 NGRNQLVV 237 >gi|332140981|ref|YP_004426719.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327551003|gb|AEA97721.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 427 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 96/195 (49%), Gaps = 19/195 (9%) Query: 77 TISLLLGYISGSILKE------LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL- 129 T +L+LG + I +E L + ++ LS+ D L+GL N +S L ++ Sbjct: 230 TQTLILG-TADDITREKNQQQALMSAVTKLEYLSQTDSLTGLANRREILSQLSDEIARME 288 Query: 130 ------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA 183 ++V+ D++ FK+IND +GH VGD + S Q+ V+ GR+GG+EF Sbjct: 289 RGQKASTLVYVDLNKFKEINDKYGHKVGDNALVEFSQQMKVLLRDSDRFGRIGGDEFVIL 348 Query: 184 ALGSSEQEAAILANDLRKIIENS-QINISSGPSIHITISAG-IAERCHKEPISTIIYRAD 241 G+ ++E I +I ++ +N+++ + IT S G + + + +AD Sbjct: 349 LYGTDDKETEIF---FERIAQHDFTLNVNNTSVVPITFSVGWVTWSAETSTVEEWLDKAD 405 Query: 242 QALYVAKKSGRNRVV 256 + +Y K + + +VV Sbjct: 406 EVMYEKKHNLQGQVV 420 >gi|320334479|ref|YP_004171190.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] gi|319755768|gb|ADV67525.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] Length = 576 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 26/184 (14%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 ++L++L ++ +R D L+GL N F+ + +++ DIDYFK Sbjct: 401 ALLQQLRWQAEELAHQARSDALTGLPNRRCFLERFEQERARADRTGAPIAVALIDIDYFK 460 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---------AAALGSSEQE 191 ++ND H +GD V+ +++ L R GGEEFA A L Sbjct: 461 RVNDEHSHAIGDAVLCRIAELLTQGVRASDTAARYGGEEFALLMPDTDTYGARLTCERLR 520 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 AI A+D + N Q+ +S G +H+ AER ++ AD LY AK G Sbjct: 521 VAIAAHDWSTVHPNLQVTLSIG--LHVAHGPEGAER--------MLASADARLYRAKALG 570 Query: 252 RNRV 255 RNRV Sbjct: 571 RNRV 574 >gi|303245877|ref|ZP_07332159.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio fructosovorans JJ] gi|302492660|gb|EFL52528.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio fructosovorans JJ] Length = 357 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 17/166 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+++S D L+GL N F+ L +E+ ++ F D+D FK +ND FGH GD Sbjct: 169 ITRMSLHDGLTGLPNRVLFMDRLRQTLRLAERSHERAAVYFIDLDRFKGVNDAFGHETGD 228 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILAND---LRKIIENSQ 207 KV+ + +L V RLGG+EF A A+G ++ I A LRK S Sbjct: 229 KVLQETARRLAGCVRRSDTVARLGGDEFVALTPAVGDADHAGVIAAKMVAVLRKPFSVSG 288 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + G S+ + + R ++ RAD A+Y AK +GRN Sbjct: 289 HDCQLGGSVGVALYPEDGVRA-----GELVRRADAAMYAAKNAGRN 329 >gi|325679388|ref|ZP_08158973.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8] gi|324108985|gb|EGC03216.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8] Length = 499 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 14/194 (7%) Query: 73 IISITISLLLG-YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125 +I++ ++ LG Y+S + K + + + + D L+G+LN F G+ Sbjct: 294 VIAMVLAATLGMYLSWLLTKPVKAMVSELDNKASTDRLTGILNKLTFEELAGTTLQNSLD 353 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 +E+ ++V DID FK++ND GH GDK++A L VF ++GR+GG+EF Sbjct: 354 SERRAMVILDIDDFKRVNDTLGHAAGDKLLAGTGGVLRQVFSDDDYLGRIGGDEFCVLVN 413 Query: 186 GSSEQEAAILAN------DLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 +S+ + +A+ L K ++ G + +I A + + K + Sbjct: 414 TASKDDDEFIAHIKERCEALNKAFHDNSTAAEYGYQVTASIGAALYPKDGK-SFEELYSA 472 Query: 240 ADQALYVAKKSGRN 253 D+A+Y AKKSG++ Sbjct: 473 CDKAMYRAKKSGKD 486 >gi|229154330|ref|ZP_04282450.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342] gi|228629154|gb|EEK85861.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342] Length = 566 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN CF Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRN-AACF 301 >gi|172039491|ref|YP_001805992.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700945|gb|ACB53926.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 335 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 33/193 (17%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQIN 143 EL +Y + +++ D L+G+ N + I SLG YN S++ D+D FK IN Sbjct: 137 ELKKAYEEMKRIAATDELTGIPNRRS-IFSLGKQEFERSQRYNSSFSLLIIDVDKFKTIN 195 Query: 144 DNFGHPVGDKVIAFL-------------------SDQLVVVFGTPMFVGRLGGEEFAAAA 184 D +GH +GD+ + + ++ + G +GRLGGEEF Sbjct: 196 DTYGHDIGDEALKMMVKITLNCLRKVDYIGRLETEEEALAKKG---HLGRLGGEEFVVIL 252 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQA 243 ++ + A A + + + + + ++ IT+S GIA K + + I+ RAD A Sbjct: 253 PHTNLKGAYKAAQRVCEAMTKETLQVED-KTVSITVSIGIATYDSKDQKMEDILKRADLA 311 Query: 244 LYVAKKSGRNRVV 256 L+ AK++GRNRV Sbjct: 312 LFAAKENGRNRVA 324 >gi|170741032|ref|YP_001769687.1| diguanylate cyclase [Methylobacterium sp. 4-46] gi|168195306|gb|ACA17253.1| diguanylate cyclase [Methylobacterium sp. 4-46] Length = 348 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 21/188 (11%) Query: 92 ELFISYNRISQLSR----------IDCLSGLLNHSAFISSLGSYNEKLS--------IVF 133 EL + RI +L R +D L+G+ N AF + L + +V Sbjct: 162 ELRQAGERIGKLQRNLASVRQEASVDALTGIANRRAFTARLRRQLAQAKAEGAGPFCLVL 221 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D+FK ND GH GD+V+ ++ L FV R GGEEFA + Sbjct: 222 LDVDHFKLFNDAHGHRTGDQVLRLVARLLTDNVKGRDFVARYGGEEFALILSDVDAESGL 281 Query: 194 ILANDLRKIIENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 +A + + + + I +G I +T+S G+A+ E +I RAD ALY AK G Sbjct: 282 TVAEQICERLRGKRLIKRETGRDIGALTLSGGLAQARPGEAQGALIERADAALYAAKGQG 341 Query: 252 RNRVVCFS 259 R+R +C + Sbjct: 342 RDR-ICLA 348 >gi|307293432|ref|ZP_07573278.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1] gi|306881498|gb|EFN12714.1| diguanylate cyclase [Sphingobium chlorophenolicum L-1] Length = 390 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 6/154 (3%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D LSGLLN F ++ K S++ DID+FK +ND GH +GD+VI L+ L Sbjct: 215 DPLSGLLNRRGFDEAIAQRTRKQPIRGSLIVCDIDHFKTVNDAHGHALGDRVIVALARIL 274 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + R GGEEF + AA +AND+R+ I ++ G + +T S Sbjct: 275 MQFAPADAVTARFGGEEFILFLPDTHAARAAAIANDIRESIAQ-EVAGQIGLAQPLTASF 333 Query: 223 GIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G++ + I I RAD ALY AK GRNRV Sbjct: 334 GLSVVQPGDAAIHEAIARADAALYDAKTRGRNRV 367 >gi|188583583|ref|YP_001927028.1| diguanylate cyclase [Methylobacterium populi BJ001] gi|179347081|gb|ACB82493.1| diguanylate cyclase [Methylobacterium populi BJ001] Length = 414 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 29/206 (14%) Query: 76 ITISLLLGYISGSILKELFISYNR------ISQLSRIDCLSGLLNHSAF-------ISSL 122 I +SL+ G + +L + + R ++ L+ D L+GL N AF + ++ Sbjct: 181 IQVSLVEGIVVEVLLALMMAAAVRRRREEAMTALAERDGLTGLFNRRAFESRAAGLLGTM 240 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + E +++ DID FK +ND+FGH VGD+++ L++ L V + GR G + A Sbjct: 241 AARQEPGALLLLDIDRFKAVNDSFGHAVGDRLLVTLAEVLTKVLASGPAEGREAGPQREA 300 Query: 183 --AALGSSE--------QEAAI--LANDLR-KIIENSQINISSGPSIHITISAGIAERCH 229 A LG E EAAI L +R ++ +G ++ I +A A C Sbjct: 301 IPARLGGDEFVILVSGLDEAAIRDLGAAIRVRMAREGGRERPAGATVSIG-AALFAGGCA 359 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 K + T+ AD ALY AK+ GR+R+ Sbjct: 360 K--LETLTALADAALYEAKRQGRDRL 383 >gi|152982239|ref|YP_001353357.1| hypothetical protein mma_1667 [Janthinobacterium sp. Marseille] gi|151282316|gb|ABR90726.1| Hypothetical protein mma_1667 [Janthinobacterium sp. Marseille] Length = 283 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + F +S + E+ LSI++ D+D FK +ND GH GDK++ ++ Sbjct: 122 DVLTGLANRALFHEIVSQQLALCERNKTVLSILYIDLDGFKAVNDKHGHEAGDKLLRAVA 181 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L V RLGG+EFA +G+ + A +A + + I + + + HI+ Sbjct: 182 SRLKTNSRHSDVVARLGGDEFAMVMVGAHMENARFVAEKMVEAISAPYV-LDDTLTSHIS 240 Query: 220 ISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256 S G+A S +++RAD A+Y AK GR RV Sbjct: 241 ASIGVATYPESGTTSEALLHRADGAMYKAKNLGRRRVA 278 >gi|114799626|ref|YP_758802.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444] gi|114739800|gb|ABI77925.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444] Length = 253 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 8/166 (4%) Query: 102 QLSRIDCLSGLLNHSAFISS---LGSYNEKLSIVFF----DIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N AF ++ L + + F+ D+D FK++ND GH GD V Sbjct: 79 RLANEDELTGLPNRRAFFATASVLQMQADAGAGQFYCAIADVDNFKRVNDAHGHEAGDGV 138 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L + V RLGGEEFA A + + + A L + + + + S Sbjct: 139 LISVAGILRRLAPPGAIVARLGGEEFALAGVFADARAARAACAALVRAVAAADHSAQS-L 197 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +TIS G++ +E +S ++ RAD+ALY AK++G+NRV+ + D Sbjct: 198 TRQVTISLGLSRETGRETLSALLNRADEALYRAKQAGKNRVMMYED 243 >gi|152987228|ref|YP_001350237.1| hypothetical protein PSPA7_4901 [Pseudomonas aeruginosa PA7] gi|150962386|gb|ABR84411.1| membrane protein, putative [Pseudomonas aeruginosa PA7] Length = 375 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/280 (23%), Positives = 119/280 (42%), Gaps = 40/280 (14%) Query: 8 FLSIWLCHEKNLESFSPHTFMIYF--SIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYI 64 +L+ +L H +L TFM+++ ++ F +F + +F L +I + + +E + Sbjct: 93 WLTYFLYHVDSLRG----TFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIHLVEVL 148 Query: 65 ----------LVENLSLVIISITISLLLGYISGSILKELFISY-------------NRIS 101 ++ L+L I+ + +SL Y+ + Y ++ Sbjct: 149 QRRLELPGRAALQVLALFIVLVWLSLFASYVQAMRQRMRQRRYALQAHQDTLRGMMRQLE 208 Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVI 155 L D L+GL N F+ G E L + D+D+FK+IND GH GD+V+ Sbjct: 209 DLVATDELTGLFNRRHFMRMAGRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVL 268 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + R GGEEF + ++ LR E ++ G + Sbjct: 269 QTFAAVARSCLRDGDILARYGGEEFVLLLPHADAEQLERCCERLRLAFEQAE---PVGVA 325 Query: 216 IHI-TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + + ++S G+ + + + RADQALY AK+ GRNR Sbjct: 326 VEVLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNR 365 >gi|330959085|gb|EGH59345.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 723 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 19/204 (9%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SA 117 LV ++S+ I++ + L ++ + +L + +I L+ D L+GL N S Sbjct: 242 LVLDISVDFITLNDTACL-LMNARDIGQLKNAQAQIHHLAYHDPLTGLPNRALLMDRLSQ 300 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 +S L N + +++F D+D+FK IND+ GHPVGD V+ ++ +L V RLGG Sbjct: 301 QLSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLNVVAARLEASVRQEDTVARLGG 360 Query: 178 EEFAA------AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCH 229 +EF +L + +L+++LR ++ ++ G + +T S GI Sbjct: 361 DEFVVLICGLDGSLDEVTHKVRVLSDNLRDLL--AEPMFLDGHRLQVTPSIGIVLIPDDG 418 Query: 230 KEPISTIIYRADQALYVAKKSGRN 253 P + ++ RAD ALY AK SGRN Sbjct: 419 LTP-ADLLKRADIALYRAKDSGRN 441 >gi|254515654|ref|ZP_05127714.1| diguanylate cyclase (ggdef domain) [gamma proteobacterium NOR5-3] gi|219675376|gb|EED31742.1| diguanylate cyclase (ggdef domain) [gamma proteobacterium NOR5-3] Length = 334 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 9/156 (5%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q++ +D L+G+ N F +S + +++ FD++ FK IND FGH GD+V Sbjct: 162 QMATLDELTGISNRRGFNMLALHALSLARRHGLTATMLVFDLNNFKVINDTFGHAEGDRV 221 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +A +D L F R GG+EF + + ++ +E A + R++I+ + N Sbjct: 222 LAAFADLLKEAFRDSDVFARTGGDEFVSLLVDTTAEEVAGVEQRFRQVID--EYNEREKR 279 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 I S G A E + +++ RADQ +YVAK+ Sbjct: 280 GYDIEFSVGAATLQPDEELDSLMDRADQLMYVAKRK 315 >gi|220906243|ref|YP_002481554.1| diguanylate cyclase [Cyanothece sp. PCC 7425] gi|219862854|gb|ACL43193.1| diguanylate cyclase [Cyanothece sp. PCC 7425] Length = 340 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 12/166 (7%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ ID L+ + N + LG LS + D+D+FK ND FGH GD+ + Sbjct: 169 LATIDNLTQIANRRKLDDYLTEEWARLGRDCLPLSFLLCDVDFFKTYNDTFGHQAGDRCL 228 Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSG 213 ++ + P V R GGEEFA + A + +R+ +EN + + Sbjct: 229 QEVAQAIAATVKRPADLVARYGGEEFAVILPNTPLAGALQVGERIRQAVENLCIVQTPTC 288 Query: 214 PSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVC 257 P+ +TIS G+A + I+++I ADQ LY+AK+ GRN VC Sbjct: 289 PNPCVTISVGVATAIPGQGMSIASLIASADQCLYLAKQRGRN-CVC 333 >gi|260599727|ref|YP_003212298.1| hypothetical protein CTU_39350 [Cronobacter turicensis z3032] gi|260218904|emb|CBA34259.1| hypothetical protein CTU_39350 [Cronobacter turicensis z3032] Length = 495 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 18/189 (9%) Query: 90 LKELFISYNRISQ-LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 L++ N I Q L+ +D L+GL N F I+ + +S+V FDIDYFK Sbjct: 301 LRDDLTRSNHILQDLALLDGLTGLANRRQFDIYLEQCITRAQATGAPVSLVMFDIDYFKI 360 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMF----VGRLGGEEFAAAALGSSEQEAAILAN 197 ND GH GD + + D ++ P+ V R GGEEFA G+ A +A Sbjct: 361 YNDTQGHVAGDACLKAVGD---ILRHLPLHNTDRVARYGGEEFAIILPGADAHAAQRVAL 417 Query: 198 DLRKIIENSQINISSGPSIH--ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254 + I +++++ + P +TISAG A + T+ RAD ALY AK++GRN Sbjct: 418 RALEAIHHARLSHPATPREEKVLTISAGAATVTGGDVNGETLKSRADDALYQAKRAGRNC 477 Query: 255 VVCFSDIEN 263 VV + + + Sbjct: 478 VVGAAGVSH 486 >gi|159185651|ref|NP_357395.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] gi|159140785|gb|AAK90180.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] Length = 664 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 12/176 (6%) Query: 102 QLSRIDCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N A + E +++ D+D+FK+ ND +GH GDK Sbjct: 227 RLSNTDSLTGLQNRRAIDHHLRLLWDNWSKKGEGFAVLLIDVDFFKKYNDRYGHQEGDKC 286 Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + + + L + +GR GGEEF S+Q+ LA +R +E + Sbjct: 287 LMTVGNALQDAIIDHGASIGRYGGEEFIVLVPFKSKQQVGELAETIRHTVEELSLAHDQR 346 Query: 214 PS----IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + ++I A + II AD+ALY+AK +GRN + F + T Sbjct: 347 RDGTFIVTVSIGASFTRPNPDGKLEKIINEADRALYIAKGNGRNCMKLFDPEDPQT 402 >gi|153002300|ref|YP_001367981.1| diguanylate cyclase [Shewanella baltica OS185] gi|151366918|gb|ABS09918.1| diguanylate cyclase [Shewanella baltica OS185] Length = 328 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 84/170 (49%), Gaps = 9/170 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L + ++ +LS+ D L+ L N + L Y+ S+V DID FK IND Sbjct: 144 QLKAANEQLERLSQTDGLTQLHNRRHWQECLDHEYDMYARYSGMASLVMIDIDNFKHIND 203 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 ++GH GDKVI ++ L GR GGEEFA +S +A LR+ I Sbjct: 204 SYGHLAGDKVIQHIAHLLSQSLRETDCAGRYGGEEFAVVLPKTSGADAMNFTERLREKIA 263 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 S I + I +T+S G+ E H S+ I +D+ALY AK+ GRN Sbjct: 264 ASVI-VYESLKISVTVSLGVCEIGSHITSSSSWISCSDKALYEAKQKGRN 312 >gi|82703159|ref|YP_412725.1| diguanylate cyclase [Nitrosospira multiformis ATCC 25196] gi|82411224|gb|ABB75333.1| diguanylate cyclase with PAS/PAC sensor [Nitrosospira multiformis ATCC 25196] Length = 432 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 21/173 (12%) Query: 96 SYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S RI L+ D L+GL N + I + Y+ +L+++F D+D+FK IND+ GH Sbjct: 263 SQKRIEYLAHYDPLTGLPNRALLADRMKTAIENAKRYSFQLAVLFVDLDHFKLINDSLGH 322 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-------AAAALGSSEQEAAILANDLRK 201 +GDK++ +++++ V RLGG+EF AA+ + E I A Sbjct: 323 EIGDKLLKIVAERMRSRLRQTDTVSRLGGDEFIILLSRINAASDAACVAEKIIAALSQPY 382 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +E ++ + + I I +G + S+++ AD+A+Y AK GRNR Sbjct: 383 HLEQHELGLGASIGISIYPDSG-------KDTSSLLRSADEAMYSAKGQGRNR 428 >gi|78066673|ref|YP_369442.1| diguanylate cyclase [Burkholderia sp. 383] gi|77967418|gb|ABB08798.1| diguanylate cyclase [Burkholderia sp. 383] Length = 466 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 9/177 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S L+EL + ++ ++ D ++G N FI+ + ++ D+D FK Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREMVRAERDGTPFCLLALDLDNFK 348 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH +GD+V+ + Q + + R+GGEEF A + A + A +R Sbjct: 349 NINDAYGHQIGDEVLRGVVRQCLDAIRPAGGLARVGGEEFMALLPDMPLEGARMTAERVR 408 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +S + + +T+S G+A+ + ++ D+ LY AK+ GRNRVV Sbjct: 409 SSIASSPFGLDF-KRVQVTVSVGVAQYGADGSTVDALLRVVDERLYQAKREGRNRVV 464 >gi|223042742|ref|ZP_03612790.1| ggdef domain protein [Staphylococcus capitis SK14] gi|222443596|gb|EEE49693.1| ggdef domain protein [Staphylococcus capitis SK14] Length = 356 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 10/203 (4%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 Y L+E L L+ IS+ I++ I+ + F NR + D L+GL N F L Sbjct: 148 YDLIEILVLIPISLIITIA-SAITFVDIWHFFSLVNRYENEDKYDYLTGLGNVKEFDRHL 206 Query: 123 GSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 N+ L+++ DID FK +ND + H GD V+ +S L + R Sbjct: 207 NEVSRIAEEKNQSLALLLIDIDGFKDVNDIYSHQSGDAVLKQMSQLLKNYVPNQFKIFRN 266 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS- 234 GGEEF+ S ++ LA ++R +E S ++ I +++S G+ + S Sbjct: 267 GGEEFSVVIRNYSLDQSVKLAENIRSGVEKSSFHLPDKEVIKLSVSIGVGYLTQDDRKSQ 326 Query: 235 -TIIYRADQALYVAKKSGRNRVV 256 + AD ++VAK GRN+V+ Sbjct: 327 RKVFKDADDMVHVAKSEGRNKVM 349 >gi|254447202|ref|ZP_05060669.1| gaf/pas/ggdef domain protein [gamma proteobacterium HTCC5015] gi|198263341|gb|EDY87619.1| gaf/pas/ggdef domain protein [gamma proteobacterium HTCC5015] Length = 488 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 12/169 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++ L+ D L+ L F+ L + + L+ V D+D+FK ND +GH GD Sbjct: 317 LATLANTDPLTQLATRRYFMERLSTAIAYCQRQQQPLAYVLLDVDHFKSFNDQYGHLAGD 376 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-----NSQ 207 + + + L R GGEEFA ++ QEA +A LR IE + Sbjct: 377 EALKRVGSILKHSPREYDLASRYGGEEFALYLPSTTAQEALQVAERLRTAIEEISDLDRP 436 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I S G ++ SA + K I +I RAD ALY AK GRNR + Sbjct: 437 ITASLGVALLDPASALPPDSDMKTVIEALIQRADTALYQAKSQGRNRTL 485 >gi|90413551|ref|ZP_01221542.1| hypothetical protein P3TCK_25540 [Photobacterium profundum 3TCK] gi|90325483|gb|EAS41966.1| hypothetical protein P3TCK_25540 [Photobacterium profundum 3TCK] Length = 284 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 11/163 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFG 147 I Y R+ ++ D LSGL N S+F + + +E+ L +V FD+D FKQ+ND +G Sbjct: 125 IEYRRVKNMAMRDHLSGLGNRSSFEQDIQHSIAMSERRDVGLVVVIFDLDNFKQVNDRYG 184 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GDKVI + L T RLGG+EF ++++ A +A + +I + Q Sbjct: 185 HLDGDKVIRRFAIALKHAVRTSDRCYRLGGDEFIMLLQPATDKSAQKVAERVHHLINDDQ 244 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 + ++ ++ S G A+ + ++I RAD+ LY K++ Sbjct: 245 ----ALRTLQVSSSHGYAQYQKGDTTLSLIDRADRQLYKQKRN 283 >gi|15889298|ref|NP_354979.1| GGDEF family protein [Agrobacterium tumefaciens str. C58] gi|15157134|gb|AAK87764.1| GGDEF family protein [Agrobacterium tumefaciens str. C58] Length = 579 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 6/164 (3%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-----GSYN-EKLSIVFFDIDYFKQINDNFGHPVG 151 ++ LS D L+G+ N A S+ G + + L ++ DID+FK IND +GH +G Sbjct: 405 EQLRTLSETDALTGVFNRRALEKSVRAILSGDEDYQSLGVMIIDIDHFKSINDRYGHAMG 464 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + + L + R GGEEF S A A+ LR++IE + Sbjct: 465 DLALQKTASLLKGALRKTDILARYGGEEFVVVLQDVSHATATATADRLRRLIEVQTFDEQ 524 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +G S+ + E +I AD LY AK++GRNRV Sbjct: 525 TGLSLTASFGVVWQEARAINSWDELIAIADDRLYEAKRAGRNRV 568 >gi|152964492|ref|YP_001360276.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans SRS30216] gi|151359009|gb|ABS02012.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans SRS30216] Length = 609 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%) Query: 107 DCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GLLN F +L + L+ D+D+FK +ND G GD+++ L+ Sbjct: 189 DGLTGLLNRRGFDQALDRAVAAAGPDGSLAAALVDVDHFKAVNDGDGQGAGDRLLRELAA 248 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 QL + R GG+EFA G +EA L LR + Sbjct: 249 QLTTALPRDAVLARYGGDEFAVLLPGRCGREALDLVEGLRAGTRT------------VAF 296 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 SAG+A E + ++ RAD AL+ AK SGR R Sbjct: 297 SAGVAHLFPGESGADLVRRADAALHAAKVSGRGR 330 >gi|333004226|gb|EGK23757.1| hypothetical protein SFK218_2428 [Shigella flexneri K-218] Length = 442 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + G V R+GGEEFA A + + ++A +RK +E ++++T+S Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSI 424 Query: 223 GIA 225 G+ Sbjct: 425 GVG 427 >gi|296283401|ref|ZP_06861399.1| diguanylate cyclase [Citromicrobium bathyomarinum JL354] Length = 418 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 12/190 (6%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFF 134 ++ LL S K + +Y R LS D L+ L N L + ++++ Sbjct: 208 MTALLATQEASDAKAVSKTYLR---LSLTDALTRLPNRRLLTERLERWLASRRPVALMMI 264 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK ND GH GD + ++++ + + R GGEEF A S ++ Sbjct: 265 DIDHFKPYNDTLGHTAGDDCLQMVANRFSQIAAQTKGVLCARYGGEEFTFALRDSDQKRL 324 Query: 193 AILANDLRKIIENSQINISSGP--SIHITISAGIAERCHKEPIS--TIIYRADQALYVAK 248 +A + + IE+ I P + IT+S G+A+ + E + ++ AD+ALY AK Sbjct: 325 VSVARTISQAIEDLAIPHPGRPDGTAIITVSVGVAQCRNGETCAFKDLVNAADRALYAAK 384 Query: 249 KSGRNRVVCF 258 GRNRV + Sbjct: 385 TKGRNRVAMY 394 >gi|262280456|ref|ZP_06058240.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258234|gb|EEY76968.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 575 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 ++ ++ D L+G+ N S ++ + SY +K + ++ DID FKQ+ND +GH VGD Sbjct: 412 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFTQTCLMIIDIDRFKQVNDQYGHIVGD 471 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 VI +++QL + + R GG+EF +A +LA +R I +I++S Sbjct: 472 HVIVNIAEQLKQNIRSSDLIVRYGGDEFLILLEQMQFVDARLLAEKIRIAISLQEIDLSG 531 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S +H+++S G A ++ RAD++L AK GRN V Sbjct: 532 SDEKLHVSVSIGFA--IGAASWIELLERADRSLLRAKARGRNAV 573 >gi|256043514|ref|ZP_05446441.1| GGDEF domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|260564708|ref|ZP_05835193.1| diguanylate cyclase [Brucella melitensis bv. 1 str. 16M] gi|265989931|ref|ZP_06102488.1| diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1] gi|260152351|gb|EEW87444.1| diguanylate cyclase [Brucella melitensis bv. 1 str. 16M] gi|263000600|gb|EEZ13290.1| diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1] Length = 240 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 23/229 (10%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97 IAT+I I+ G+ G++ V L +++ I++ LG S L+EL SY Sbjct: 21 IATIISIS----LSTGIRFALGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYR 76 Query: 98 ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148 N +++++ +D L+GLLN +FI + N+ +F D+DY KQIND +GH Sbjct: 77 TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 136 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204 P GD I ++ L + + R+GG+EF A G+ ++L++ LR ++ Sbjct: 137 PAGDDAIIAVAQALEDSLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 196 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + N+ S +T+S G + ++ AD+ LY KKS R Sbjct: 197 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSQRQ 240 >gi|237667012|ref|ZP_04526996.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262] gi|237655360|gb|EEP52916.1| diguanylate cyclase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 664 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 14/170 (8%) Query: 94 FISYNRISQLSRIDCLSGLLN--HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFG 147 ISY +I +L + GL + + + L + + SI+ DID FK +ND +G Sbjct: 499 LISYTKIKKLRAQNQKDGLTKSYNRFYFNELYEHFIREDTNFSIMMIDIDNFKSLNDTYG 558 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V+ + + + + + R GGEEF + S QE ++ +R +E Sbjct: 559 HQFGDTVLINVCNTISKIIDKDSKLCRYGGEEFVVVSSNKSRQELEEISEKIRVEVE--- 615 Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 I ++ +T+S G+A C +KE + AD+ LY AK +G+N+VV Sbjct: 616 -KIEFQENVKVTLSIGVAMSCDNKEDTLNV---ADKNLYTAKTTGKNKVV 661 >gi|213859814|ref|ZP_03385518.1| RNase II stability modulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 437 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSA---FIS-SLGSYNE-KLSIVFFDIDYFK 140 +G+ + E + R+ L+ D ++GL N +A FI+ ++ S E ++ IV+ D+D FK Sbjct: 219 AGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILA 196 +IND +GH GD+++ +S L+ + RLGG+EF A + + E A+ + Sbjct: 279 KINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAHTSQAALEAVASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G +I I+++ H + ++I AD A+Y AK+ GR + Sbjct: 339 TRLRQPFRIGLIEVYTGCAIGISLAPR-----HGQDSESLIRTADTAMYNAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|218531236|ref|YP_002422052.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacterium chloromethanicum CM4] gi|218523539|gb|ACK84124.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacterium chloromethanicum CM4] Length = 1003 Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPVGD 152 I ++R D L+GL N F +L G+ + S+V D+D FK +ND FGHP GD Sbjct: 576 IEHMARHDALTGLPNRRLFQETLAREIDGARRDGGSVVVLCCDLDRFKAVNDTFGHPAGD 635 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 ++ ++ +L V RLGG+EFA +Q +A R++I+ + + Sbjct: 636 ALLRVIAGRLRATLREGDVVARLGGDEFAIILPSRGKQRR--IAAFARRLIQAAGRPVDL 693 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 G + + +S G+A H + T+ AD ALY AK SGRN Sbjct: 694 GGRATTVGVSIGVAVWPKHGDSADTLFKNADIALYRAKDSGRN 736 >gi|163852480|ref|YP_001640523.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163664085|gb|ABY31452.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 1003 Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPVGD 152 I ++R D L+GL N F +L G+ + S+V D+D FK +ND FGHP GD Sbjct: 576 IEHMARHDALTGLPNRRLFQETLAREIDGARRDGGSVVVLCCDLDRFKAVNDTFGHPAGD 635 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 ++ ++ +L V RLGG+EFA +Q +A R++I+ + + Sbjct: 636 ALLRVIAGRLRATLREGDVVARLGGDEFAIILPSRGKQRR--IAAFARRLIQAAGRPVDL 693 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 G + + +S G+A H + T+ AD ALY AK SGRN Sbjct: 694 GGRATTVGVSIGVAVWPKHGDSADTLFKNADIALYRAKDSGRN 736 >gi|89900556|ref|YP_523027.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89345293|gb|ABD69496.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 716 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 17/176 (9%) Query: 96 SYNRISQLSRIDCLSGLLNH---SAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGH 148 + RI L+ D L+GL N F+ +E+L++VF D+D FK IND GH Sbjct: 257 TERRIEHLAHHDTLTGLPNRLHLQVFLEQSILIAKRMSEQLAVVFLDLDRFKTINDTLGH 316 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLR----KII 203 PVGD ++ ++D+L V RLGG+EF G A+ +A +R + Sbjct: 317 PVGDDLLIQVADRLKTSVRQYDMVARLGGDEFVMILRGHDMPSVASAVAEKIRLHLNQPF 376 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + Q + + SI I + G ER + ++ AD A+Y K G N FS Sbjct: 377 QIGQHTLRTATSIGIALYPGNGER-----MDDLMKHADTAMYFTKSEGGNGFCFFS 427 >gi|119775740|ref|YP_928480.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119768240|gb|ABM00811.1| GGDEF domain protein [Shewanella amazonensis SB2B] Length = 524 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 114/266 (42%), Gaps = 34/266 (12%) Query: 15 HEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSL-VI 73 H+ ++ SF ++ F+ F V+ + ++ L LTP + +LV+ + + Sbjct: 253 HKSDIPSFISRESILIFATFM-----VVVLLGSVPLSLFVLTPLGNINRVLVKMTTRGRL 307 Query: 74 ISITISLL---LGYISGSI--LKELFISY-NRISQLSRIDCLSGLLN-----------HS 116 I S L ++GS L E+ + N + LS D L+G+ N H Sbjct: 308 TKINQSFFIDELHRLTGSFNQLAEMLERHQNYLESLSFKDPLTGIANRRGLEAFASRAHQ 367 Query: 117 AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRL 175 ++ G+ L + D+D FKQ ND GH GDK + ++ L++ V R Sbjct: 368 EWLDGKGA----LGFLMVDVDEFKQYNDTQGHTAGDKALISVAQTLLIECRRRGELVTRF 423 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--- 232 GGEEF G + LA + + I SG H+TIS G H +P Sbjct: 424 GGEEFCVVVHGDDTLQMERLAERMLHRVRELAITHPSGQFGHVTISVGGVLFEHYDPQFA 483 Query: 233 ---ISTIIYRADQALYVAKKSGRNRV 255 ++ AD+ LY+AK GRNRV Sbjct: 484 DTSWQDMLVMADKQLYLAKSEGRNRV 509 >gi|289646337|ref|ZP_06477680.1| GGDEF [Pseudomonas syringae pv. aesculi str. 2250] Length = 538 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 10/172 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL ++ + ++R D L+ L N F ++ N ++++ DID+FKQ ND Sbjct: 341 ELSVARADLEIIARTDSLTHLANRRCFDATFQLEWERASRDNSSIALILLDIDWFKQYND 400 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD ++ ++ + P R GGEEF G+ A +A ++R I Sbjct: 401 CYGHLRGDDCLSQVAGLIGSGIKRPGDLAARYGGEEFVILLPGTDLTGALSVAEEVRLSI 460 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 EN+ I S+ P ++TIS+G+ E + + AD+ LY AK GRN Sbjct: 461 ENALIEHSASPLGNVTISSGVVAINALETEGYTAALREADRLLYCAKTRGRN 512 >gi|326319484|ref|YP_004237156.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376320|gb|ADX48589.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 579 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 11/167 (6%) Query: 100 ISQL---SRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQINDNFGHP 149 I+QL S D L+GL N AF ++ + ++ ++++ D+D FK ND GH Sbjct: 409 IAQLREQSLTDFLTGLPNRRAFFAAARERVAQARQQRFDVALMLLDVDLFKSFNDRAGHA 468 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+ + ++ + V R GGEEF + E A A LR IE + + Sbjct: 469 AGDEALRAVARAVRNTLRPGDLVARYGGEEFVVLLGPCAGPEGAACAERLRHAIETAPVI 528 Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + SG +T S G+A + H + ++ AD ALY AK GRNRV Sbjct: 529 LPSGERFRLTASVGVAVSQRHGLVLDHLLSEADTALYRAKDRGRNRV 575 >gi|261212331|ref|ZP_05926616.1| GGDEF family protein [Vibrio sp. RC341] gi|260838262|gb|EEX64918.1| GGDEF family protein [Vibrio sp. RC341] Length = 412 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+ + A L K ++ D+D+FK+ ND +GH GD V+ ++ +L + Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTVAMLDVDHFKKFNDTYGHDTGDDVLKLVATRLRQIG 300 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS-------- 215 G V R GGEEF+ G E DLR+ IE+ ++ N + P Sbjct: 301 GKAR-VYRYGGEEFSIIYRGKLANEVISFIEDLRQDIESYELVIRNTTKRPKNDNEGAKK 359 Query: 216 ---------IHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRN 253 + ITIS G+ + H+ P + AD ALY AK++GRN Sbjct: 360 RSRKSNSDIVTITISIGVCDSSLHRNP-HEALKAADGALYSAKQAGRN 406 >gi|229492218|ref|ZP_04386026.1| diguanylate cyclase [Rhodococcus erythropolis SK121] gi|229320844|gb|EEN86657.1| diguanylate cyclase [Rhodococcus erythropolis SK121] Length = 469 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 11/167 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D L+G L+ AF + + + ++++ D+D+FK INDN GH GD Sbjct: 300 LQRIAECDALTGTLSRHAFWTQSQELLDAQHAAQRPIAVMMLDLDHFKSINDNLGHLTGD 359 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ + L+ GRLGGEEFA AA + +EA LA +R+ E +I Sbjct: 360 SVLEQFGNTLLAATEGLGLSGRLGGEEFAVAAADCTFEEAIQLAERIREAQEAHARSIR- 418 Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258 T+S G+A P + T++ AD A+Y AK+ GRN VV F Sbjct: 419 --GFAGTVSIGVAWADRAMPGMETLLDIADNAMYQAKRDGRNLVVAF 463 >gi|90577847|ref|ZP_01233658.1| hypothetical protein VAS14_12389 [Vibrio angustum S14] gi|90440933|gb|EAS66113.1| hypothetical protein VAS14_12389 [Vibrio angustum S14] Length = 350 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRI---DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146 Y+ I Q+ R D L+GLL+ FI S Y +S++ DID + IND + Sbjct: 179 YDAIMQVKRTTTHDYLTGLLSREGFIPLYLNESSRCKRYRRDISMLLIDIDNLRDINDRY 238 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 G VGDK I L+ + + + RL +EF + Q+A +A LR + Sbjct: 239 GLDVGDKAIMMLAKCMKETCDADVQIARLSCQEFCILIPNADLQKAEFIAITLRNEVAKW 298 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + SG I++TIS GI +++ I +A+ AL AK+ G N++ Sbjct: 299 TLELESGHKINMTISVGITTVEYQDFRYDYI-KAESALMRAKRWGYNQI 346 >gi|88798508|ref|ZP_01114092.1| sensor histidine kinase [Reinekea sp. MED297] gi|88778608|gb|EAR09799.1| sensor histidine kinase [Reinekea sp. MED297] Length = 1072 Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 29/199 (14%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL--------SIVF 133 LG I L+E ++ + ++ D L+GLLN + L +L ++ F Sbjct: 866 LGLILDRRLREAYLEHR-----NKTDLLTGLLNRAGLFERLKKLFAQLRRDTEQPFALCF 920 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 FD+D+FK ND+FGH +GD V+ L+DQ+ + RLGG+EF + A Sbjct: 921 FDLDHFKYFNDHFGHDLGDGVLKALADQVNTQLRGTDELCRLGGDEFILLLPKTDRASAE 980 Query: 194 ILANDLRK-----------IIENSQINISSGPSIH-ITISAGIA--ERCHKEPISTI--I 237 L LR +I+++ + + P IT S G+ +R + +S I + Sbjct: 981 ALVERLRTTLAKPDWWLSLLIDSTSSDANPVPRNEWITASFGVVVLDRWPPDGVSRIDLL 1040 Query: 238 YRADQALYVAKKSGRNRVV 256 + D A+Y AKK G+NRVV Sbjct: 1041 AQGDAAMYQAKKQGKNRVV 1059 >gi|330979889|gb|EGH78189.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 530 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 17/172 (9%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLIALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A + + I + QI + P + Sbjct: 396 RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILQAIRDEQIEHPASPFGIV 455 Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 TIS G+A +R + +I AD+ALY AK GRNRV S EN T Sbjct: 456 TISLGVATFVGTDRQLDQ--RGLIELADRALYAAKSQGRNRVNVAS--ENAT 503 >gi|167648073|ref|YP_001685736.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Caulobacter sp. K31] gi|167350503|gb|ABZ73238.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caulobacter sp. K31] Length = 692 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 9/168 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L+GL N + F + + E ++ D+D+FK IND GH GD Sbjct: 264 VENLAFKDPLTGLPNRAYFNRKFQEAVDASEIMGELFGLIMIDVDHFKDINDTLGHDAGD 323 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211 ++ L++ L F + V RLGG+EFA G SE + N L+ ++ + Sbjct: 324 ALLKRLAEMLHAAFRSGDTVARLGGDEFAVILRGLHSEADMMRPVNALQDLLRRPIEHGG 383 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S+ +I A + +P S +I AD ALY AK GRNR V F+ Sbjct: 384 RSFSVSASIGAALHGDLDADP-SHMIKNADIALYRAKDEGRNRSVVFT 430 >gi|114561735|ref|YP_749248.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114333028|gb|ABI70410.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 488 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 6/127 (4%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S++ DID+FK IND GH +GDK++ ++ L V R GGEEF Sbjct: 363 MSLIIIDIDFFKAINDKHGHTIGDKILVQVAQVLQASVRELDVVARWGGEEFVVVC---- 418 Query: 189 EQEAAIL-ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 Q A+ A +L + I + + +I +T S GIA EPI RAD ALY A Sbjct: 419 -QHVALHDATELCQRITDELSHFHFYHNIKVTCSFGIALLGENEPIQACFERADAALYKA 477 Query: 248 KKSGRNR 254 K+SGRN+ Sbjct: 478 KQSGRNQ 484 >gi|330943949|gb|EGH46156.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 530 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 17/172 (9%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L + E+ LS++ D D+FK+ ND++GH GD+ + L+ Sbjct: 336 DKLTGLANRRRFDQFLEVEFKRARRERSLLSLILIDADHFKRYNDHYGHLAGDECLIALA 395 Query: 160 DQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P V R GGEE A G+ E A +A + + I + QI + P + Sbjct: 396 RVVEQFIRRPSDVAARYGGEEIAVVLPGTDESNARQVAEKILQAIRDEQIEHPASPFGIV 455 Query: 219 TISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 TIS G+A +R + +I AD+ALY AK GRNRV S EN T Sbjct: 456 TISLGVATFVGTDRQLDQ--RGLIELADRALYAAKSQGRNRVNVAS--ENAT 503 >gi|330872777|gb|EGH06926.1| response regulator/GGDEF domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 334 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 165 LQRLMNSDGLTGLSNRRHFDEYLELEWRRATRDQAQLSLLMIDVDYFKAYNDNFGHLEGD 224 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA +S A +LA LR+ + I +I Sbjct: 225 EALRQVAKAIRNSCSRPSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVAGMNIPHI 284 Query: 211 SSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 + P +T+S G+A + +I AD+ LY+AK +GRN+V Sbjct: 285 APVPGSSLTVSIGVATVTPQVGRHSRQLILDADKGLYLAKNNGRNQVAA 333 >gi|308188100|ref|YP_003932231.1| hypothetical protein Pvag_2622 [Pantoea vagans C9-1] gi|308058610|gb|ADO10782.1| Uncharacterized signaling protein [Pantoea vagans C9-1] Length = 693 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 14/201 (6%) Query: 64 ILVENLSLVIISITI--SLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFIS 120 + V ++L I+ IT+ S+L + + L N+ + QL+ D L+ L N Sbjct: 217 VWVSLITLSILGITLLSSMLDAQVRAARLATRLNRANQELRQLAMHDNLTALPNRVMLEQ 276 Query: 121 SL------GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L + NE + ++++ D+D FK +ND +GH VGD+++ ++++L M + Sbjct: 277 QLDLAIKQATLNEDRFAVIYMDLDGFKAVNDTWGHHVGDRLLVAVAERLRSQLSNTMLLV 336 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEP 232 RLGG+EF A A LA L K+I S + +H+++SAGIA H Sbjct: 337 RLGGDEFVLMA-ECDISPARQLAQKLVKVI-GSPFELDR-YVLHVSLSAGIAIFPLHGRS 393 Query: 233 ISTIIYRADQALYVAKKSGRN 253 +++ AD A+Y K SGRN Sbjct: 394 RQELLFNADAAMYHTKHSGRN 414 >gi|303326534|ref|ZP_07356977.1| putative diguanylate cyclase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302864450|gb|EFL87381.1| putative diguanylate cyclase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 536 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/257 (24%), Positives = 115/257 (44%), Gaps = 29/257 (11%) Query: 27 FMIYFSIFFSIFIATVIFIANIFLFYIGL-----------TPFYGLEYILVENLSLVIIS 75 F I ++ ++ + TV + L I L +P L + + L ++ Sbjct: 283 FYISIALLAAMVLGTVAVLHRHILSPISLAAQELRQIRFGSPAKALPPVRIRELQQLLD- 341 Query: 76 ITISLLLGYI------SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--E 127 + L GY+ SG++ +E N+ LS +D L+G+ N +F + L Sbjct: 342 -LVPSLRGYLKDLAARSGALEQE----KNKYENLSLVDALTGVANRRSFDARLAQSACCA 396 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDK-VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + ++ D+D FK ND+ GH GDK ++A ++ + R GGEEFA Sbjct: 397 SVGMLMIDVDLFKNYNDSLGHLAGDKCLVAVARAMQATLYRHDDTLFRYGGEEFAVILED 456 Query: 187 SSEQEAAILANDLRKIIENSQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 Q+A +A + I + ++ + + P + ++I +A R + ++ RAD+A Sbjct: 457 VVAQQALAVAERIMDRIRSLRLPHPDSAVAPYVTVSIGVAVARRGEGCSGAELVARADKA 516 Query: 244 LYVAKKSGRNRVVCFSD 260 LY AK GR+R+ + D Sbjct: 517 LYRAKAGGRDRICLYGD 533 >gi|300313993|ref|YP_003778085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domain-containing protein [Herbaspirillum seropedicae SmR1] gi|300076778|gb|ADJ66177.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domain protein [Herbaspirillum seropedicae SmR1] Length = 573 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 12/181 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 +EL + ++ LS D L+G+ N F +L + + L+++ D+DYFK+ N Sbjct: 389 RELERANRKLEALSATDGLTGVANRRRFDEALANEMRRAVRSGQSLALLMLDVDYFKKYN 448 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD+ + ++ L V R GGEEF+ +A A ++ + Sbjct: 449 DRYGHLAGDECLRIVARVLQKSSRRATDLVARYGGEEFSVIIAECDTTQALQQAENICQA 508 Query: 203 IENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I ++ + P +I+ S G+A H P ++ ADQALY AK GRNRVV S Sbjct: 509 IFELKLPHADSPFGYISASIGVAVLLPDEHTAP-EQMVRIADQALYHAKYQGRNRVVLGS 567 Query: 260 D 260 D Sbjct: 568 D 568 >gi|289625729|ref|ZP_06458683.1| GGDEF [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869667|gb|EGH04376.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 538 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 10/172 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL ++ + ++R D L+ L N F ++ N ++++ DID+FKQ ND Sbjct: 341 ELSVARADLEIIARTDSLTHLANRRCFDATFQLEWERASRDNSSIALILLDIDWFKQYND 400 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD ++ ++ + P R GGEEF G+ A +A ++R I Sbjct: 401 CYGHLRGDDCLSQVAGLIGSGIKRPGDLAARYGGEEFVILLPGTDLTGALSVAEEVRLSI 460 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 EN+ I S+ P ++TIS+G+ E + + AD+ LY AK GRN Sbjct: 461 ENALIEHSASPLGNVTISSGVVAINALETEGYTAALREADRLLYCAKTRGRN 512 >gi|262165611|ref|ZP_06033348.1| GGDEF family protein [Vibrio mimicus VM223] gi|262025327|gb|EEY43995.1| GGDEF family protein [Vibrio mimicus VM223] Length = 384 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 10/167 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 I ++R+ + D L+G N F L + + DID+FKQIND++GH + Sbjct: 216 IEWHRLRSIR--DELTGAFNRRYFKEQVQRQLNQSDTPYVVALIDIDHFKQINDSYGHDM 273 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQIN 209 GD VI+F+ +L + T V R GGEEFA A +E+ A+ + I SQ Sbjct: 274 GDAVISFVVRKLESLNLTDCLVARYGGEEFAVFAREADAERVKAVFCSVCDAI---SQGF 330 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S+ +++S G + +AD A+Y AK+ GRNRV+ Sbjct: 331 CIENQSLKVSVSIGAVLFDTPFDYGEALRKADSAMYQAKEQGRNRVM 377 >gi|16329566|ref|NP_440294.1| PleD gene product [Synechocystis sp. PCC 6803] gi|1652049|dbj|BAA16974.1| PleD gene product [Synechocystis sp. PCC 6803] Length = 481 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 13/176 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + ++ L+ +D L+G+ N L +++ LS++ DID+FKQ ND +GH Sbjct: 307 FAQVHYLANMDGLTGIANRRYLDHFLEQQWQKLAKHHQYLSLILCDIDFFKQYNDTYGHL 366 Query: 150 VGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD+ + +++ L V+ GT + R GGEEFA +++Q + L+ + + +Q Sbjct: 367 EGDECLKKVANLLKKVMRRGTDL-TARYGGEEFALVLPQTNKQGCQNVVIHLQSVFKQAQ 425 Query: 208 INISSG---PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I S P + ++I + P +I ADQAL+ AKK+GRN F+D Sbjct: 426 IPHRSSIIQPYLTLSIGSATMVPLPNVPPKQLIDWADQALFKAKKAGRNCHFSFAD 481 >gi|89094950|ref|ZP_01167881.1| PAS:GGDEF protein [Oceanospirillum sp. MED92] gi|89080816|gb|EAR60057.1| PAS:GGDEF protein [Oceanospirillum sp. MED92] Length = 892 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFF-DIDYFKQINDNFGHPVGD 152 I QL+ D L+GL N + L S + +L VFF D+D FK +ND GH GD Sbjct: 452 IHQLAFYDSLTGLPNRRSLQERLDSALSSCRHTRQLGAVFFIDLDNFKNLNDTAGHDQGD 511 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDL-RKIIENSQIN 209 K++ ++++L V RLGG+EF LG E D+ K+I Q Sbjct: 512 KLLVEVANRLNSCVRNADMVARLGGDEFIVILENLGVDESNVLAQVKDIVAKVILTIQAP 571 Query: 210 ISSG-PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ G + H T S GIA K+ ++ R+D A+Y AK SG+N Sbjct: 572 LTIGTQAYHPTCSIGIALFSEKDFSDEVMKRSDMAMYQAKSSGKN 616 >gi|331018627|gb|EGH98683.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 429 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 11/146 (7%) Query: 116 SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 S +S L N + +++F D+D+FK IND+ GHPVGD V++ ++ +L V RL Sbjct: 5 SQQVSLLQHQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTVARL 64 Query: 176 GGEEFA------AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ER 227 GG+EF +L + +LA++LR ++ ++ G + +T S GI Sbjct: 65 GGDEFVVLICGLEGSLEHVTHQVRVLADNLRVLL--AEPMFLDGHRLQVTPSVGIVLIPD 122 Query: 228 CHKEPISTIIYRADQALYVAKKSGRN 253 P + ++ RAD ALY AK SGRN Sbjct: 123 DGLTP-ADLLKRADIALYRAKDSGRN 147 >gi|322834728|ref|YP_004214755.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Rahnella sp. Y9602] gi|321169929|gb|ADW75628.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Rahnella sp. Y9602] Length = 697 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 45/276 (16%) Query: 10 SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTP------------ 57 ++W+ NL SP+ ++ S A V+ A + + YIG+ Sbjct: 156 ALWMAF--NLRHQSPNVRLLRISA------AVVMGAAIVGMHYIGMAAAQFPMDSHSMAA 207 Query: 58 FYGLE------YILVENLSLVIISITISLLLGYISG--SILKELFISYNR-ISQLSRIDC 108 F G++ ++V L+++ I++ IS+L G + SIL NR ++QL+ D Sbjct: 208 FSGVDNNWLALLVIVVTLAILAITLIISILDGRMQARTSILASSLAQANRELTQLALHDN 267 Query: 109 LSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L N L +K S ++FFD+D FK +ND FGH +GD+++ ++++ Sbjct: 268 LTHLPNRLLLEDRLSQAFQKASRGESQFAVLFFDLDGFKAVNDAFGHHIGDQLLISVTER 327 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN----SQINISSGPSIH 217 L + RLGG+EF + +A+ LA+ L +I S+ + S+ Sbjct: 328 LQSQLRATDTLARLGGDEFVLLVEITEPTDASQLADKLVHLIARPFYVSRYELLVSASVG 387 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I + G E + ++ AD A+Y K SGRN Sbjct: 388 IAVYPGDGENERE-----LMLNADAAMYHTKNSGRN 418 >gi|304412089|ref|ZP_07393699.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS183] gi|307305984|ref|ZP_07585730.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica BA175] gi|304349639|gb|EFM14047.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS183] gi|306911477|gb|EFN41903.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica BA175] Length = 310 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 16/164 (9%) Query: 106 IDCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPVGD----KV 154 +D L+G+ N F L NE LS+V D+D+FK+ ND +GH GD +V Sbjct: 146 LDSLTGVANRRQFEQRLPEIWKHCCRNELALSVVMLDVDFFKRFNDRYGHQEGDQCLRQV 205 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +SD L FV R GGEEF + A A + ++ + Sbjct: 206 AKAISDSLQRATD---FVARYGGEEFICILPETKLAGAIHTAQKIVNAVQALHLEHLESS 262 Query: 215 SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 +TISAG+A K ++ T+I ADQ LY+AK+SGRN+VV Sbjct: 263 FQEVTISAGVASVLPKSDLTWQTLIETADQQLYLAKESGRNQVV 306 >gi|298252160|ref|ZP_06975963.1| diguanylate cyclase and metal dependent phosphohydrolase [Ktedonobacter racemifer DSM 44963] gi|297546752|gb|EFH80620.1| diguanylate cyclase and metal dependent phosphohydrolase [Ktedonobacter racemifer DSM 44963] Length = 923 Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 13/189 (6%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132 ++L ++L+E + + +QL+ D ++GL NH A +++L E +++ Sbjct: 513 IILAQRQQALLQERDTLFRQHAQLAVTDPVTGLPNHRALMNALDELLAQSRERGETCALL 572 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 F D+D FK +ND +GH GD + + + L VGR GGEEF A S +A Sbjct: 573 FIDLDSFKHVNDTWGHQAGDFFLHEVGENLRQAVSPQAVVGRYGGEEFVVIAPNISLLQA 632 Query: 193 AILANDLRKIIENS----QINISSGPS-IHITISAGIA-ERCHKEPISTIIYRADQALYV 246 LA +R ++ + N S P + +T S G+ H T++ AD+ +Y Sbjct: 633 GELAEHVRVQLQQALHAWSPNEHSPPVYVRLTASTGVVLYPFHGANRGTLLEAADRLMYQ 692 Query: 247 AKKSGRNRV 255 AK+ GRN V Sbjct: 693 AKQGGRNCV 701 >gi|260770141|ref|ZP_05879074.1| GGDEF family protein [Vibrio furnissii CIP 102972] gi|260615479|gb|EEX40665.1| GGDEF family protein [Vibrio furnissii CIP 102972] Length = 660 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 12/176 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISS----LGSYNEKL---SIVFFDIDYFKQINDNFGHPVG 151 R++ L+ D L+GL N S L S + L ++++ D+D FKQ+ND+FGH G Sbjct: 485 RLAYLAHHDSLTGLANRSELYRVVEDILASNHNTLVPFALIYLDLDGFKQVNDSFGHDAG 544 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ +S++L+ + V RL G+EF S LAN L +I +Q + Sbjct: 545 DEVLKQVSERLLSQVRSHDLVARLSGDEFVLVIYPSERDSVTHLANRLLTVI--AQDMVY 602 Query: 212 SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G + + S G+ + + + + T++ AD A+Y AK +G+ R + T Sbjct: 603 RGQVLRVGASMGVYYVDDANLD-LDTVMKSADSAMYQAKCAGKGRYILMDHTRQRT 657 >gi|241766741|ref|ZP_04764574.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii 2AN] gi|241362895|gb|EER58623.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii 2AN] Length = 310 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 13/162 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F + L + LS++ FD+D+FK ND +GH GD+ + ++ Sbjct: 146 DGLTGVNNRRKFDAVLQREWQDARHEVRPLSLLLFDVDFFKHYNDCYGHVEGDECLRRVA 205 Query: 160 DQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIH 217 L P FV R GGEEF S + A +A R+ + +QI + P Sbjct: 206 QALTRATHRPGDFVARYGGEEFVLLLPASDARAALTVAERCRQEVFKAQIPHAKSPIGQL 265 Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+SAG+ H +P+ + D+ LY AK GRNR+V Sbjct: 266 LTLSAGVGTAIPAAHDDPVR-FLEEVDRRLYRAKHEGRNRIV 306 >gi|153007631|ref|YP_001368846.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC 49188] gi|151559519|gb|ABS13017.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ochrobactrum anthropi ATCC 49188] Length = 707 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 23/170 (13%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R++ ++ D L+GL N + F + SL G +E ++ + DID+FK INDN GH G Sbjct: 266 ERMAHIAMHDSLTGLPNRAYFAHHVESLLKKGGDSEPFALFYLDIDHFKNINDNIGHQAG 325 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN-------DLRKIIE 204 D+++ ++ +L + + F+ RLGG+EFA + + A+ A+ D +++ Sbjct: 326 DQLLQEVARRLKQITTSDEFIARLGGDEFAIVYRSGTLAQIAMFADRILSAFQDPFELVR 385 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 NS+ + S GIA+ H + ++ AD ALY +K GR Sbjct: 386 NSEF---------VACSMGIAQAPLHGDNPDVLMRNADLALYASKSGGRR 426 >gi|144898932|emb|CAM75796.1| response regulator/GGDEF domain protein [Magnetospirillum gryphiswaldense MSR-1] Length = 415 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 12/177 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 +L + + + D L+G+ N +F +++ ++++ D+D+FK IND Sbjct: 243 DLMEQVDALKAAATTDYLTGIPNRRSFFERAQPLLAAAQRGQAEVAVALIDLDHFKSIND 302 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH GD +A ++ LV V R GGEEF A + + + LR I Sbjct: 303 SHGHETGDTALATVARLLVAECRQTDLVARFGGEEFCVLAFNLAGESRDAYFDRLRSRIS 362 Query: 205 NSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ + P IT+SA I + + + +I ADQ LY AK+ GRNR VC+ D Sbjct: 363 DLNLDFNGQP---ITLSASIGVSSNVQLGLDGMIAEADQQLYRAKQEGRNR-VCWLD 415 >gi|83748361|ref|ZP_00945385.1| Sensory transduction protein kinase [Ralstonia solanacearum UW551] gi|83724983|gb|EAP72137.1| Sensory transduction protein kinase [Ralstonia solanacearum UW551] Length = 816 Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 13/172 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----------LSIVFFDIDYFKQIND 144 + RI+ + D L+GLLN F ++L + E L+++ D+D FK IND Sbjct: 643 TVQRIAWDATHDVLTGLLNRRGFDATLRAQVEAHRGTRAAPRTPLALLMIDLDGFKAIND 702 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD V+ +++++V T RLGG+EFA Q A A+ +R + Sbjct: 703 CYGHAAGDDVLRGIAERVVQNTRTQDHAARLGGDEFAVILPNCDLQTAVTFADRIRAALA 762 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +++G I +S G+ E + + + R D A Y AK GRN + Sbjct: 763 RQPV-LAAGARAQIALSQGVVELQADDADAAAFLARVDAACYRAKSEGRNTI 813 >gi|47568074|ref|ZP_00238779.1| sensory box protein [Bacillus cereus G9241] gi|47555228|gb|EAL13574.1| sensory box protein [Bacillus cereus G9241] Length = 562 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN CF Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRN-AACF 301 >gi|330831552|ref|YP_004394504.1| GGDEF domain-containing protein [Aeromonas veronii B565] gi|328806688|gb|AEB51887.1| GGDEF domain protein [Aeromonas veronii B565] Length = 371 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 17/166 (10%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 SR+D L+G+ N + SL + LS+V D+DYFKQ ND +GH +GD + Sbjct: 200 SRLDGLTGIANRAHLDDSLERAWRRCHRARAPLSLVLVDVDYFKQFNDLYGHQLGDDCLQ 259 Query: 157 FLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN----SQINIS 211 ++ L V R GGEEFA + Q A +A+++R+ ++ Q ++ Sbjct: 260 QVAGLLAEVERREDDLAARYGGEEFALLLPCTGMQGALQVADNVRQALKELAIPHQKSLV 319 Query: 212 SGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255 SG +T S G+A + I+ +I +AD ALY AK +GR+R+ Sbjct: 320 SG---RVTCSFGVATLIPDNSMKIADLIQKADAALYQAKHNGRDRI 362 >gi|288553530|ref|YP_003425465.1| sensory box/GGDEF protein [Bacillus pseudofirmus OF4] gi|288544690|gb|ADC48573.1| sensory box/GGDEF protein [Bacillus pseudofirmus OF4] Length = 573 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 11/171 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + + +L+ D L+ L N F++ L S EKL+++F D+D FK +ND GH Sbjct: 140 DEVYRLANEDPLTNLPNRRCFMNYLENKLLHAASSKEKLAVLFIDLDRFKYVNDTLGHLF 199 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209 GD+V+ ++++L + RLGG+EF E+E + L DL II Sbjct: 200 GDRVLKHIAERLQAHLPEKSMIARLGGDEFVVVMTDVKEKEEPVSLTEDLLTIIREPL-- 257 Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFS 259 I G +T S GIA ++ AD A+Y AK G +R+ ++ Sbjct: 258 IMDGFEFTLTGSVGIALSPENGIDAEALLTSADAAMYRAKAKGSDRLEVYN 308 >gi|229158909|ref|ZP_04286966.1| Sensory box protein [Bacillus cereus ATCC 4342] gi|228624520|gb|EEK81290.1| Sensory box protein [Bacillus cereus ATCC 4342] Length = 735 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 13/177 (7%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSAND-VAVMFLDLDRFKKIND 354 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 355 RLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414 Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 415 -NKPFFI-QGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVFFS 469 >gi|218783110|ref|YP_002434428.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218764494|gb|ACL06960.1| diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 450 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 22/178 (12%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 ++ +D L+GL + ++ + K I DID+FK+ ND +GH GD+V+ ++ +L Sbjct: 275 MAYMDELTGLPGRRSLNETMLNLGRKYVIAMIDIDHFKKFNDTYGHKTGDQVLKMIATRL 334 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---------- 212 + G R GGEEF A G EA R IEN+ I S Sbjct: 335 GKMGGGAKTF-RYGGEEFTAIFPGKEIFEALPHIEKYRLDIENTPFIIRSKGRKTSNASA 393 Query: 213 -----GPS---IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 P+ + +T+S G+AE R +P ++ AD+ LY AKKSGRN V D Sbjct: 394 RGKEPAPTTKRVKVTVSIGVAEPTRALTKP-EQVMKAADKILYKAKKSGRNCVKSSQD 450 >gi|220905529|ref|YP_002480841.1| PAS/PAC sensor-containing diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869828|gb|ACL50163.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 977 Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 20/174 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS+ D L+ L N AF + ++ +++F D+D FK++ND+ GH GD Sbjct: 795 LERLSQRDSLTDLYNKVAFREKVMQNMPVRPKGDKTHALLFLDLDNFKELNDSLGHMAGD 854 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII------ENS 206 + +D L +F VGR GG+EF A+G + A A + K + E Sbjct: 855 VALIDAADALRRIFRNVDAVGRFGGDEFCVFAMGITRNAVAARAESVLKALAMHFDREGK 914 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +NIS+ SI I + G +E ++E + RAD A Y AK+ G+NR + D Sbjct: 915 AVNISA--SIGIYMFDG-SENSYEESLQ----RADNAQYRAKQLGKNRYAFYDD 961 >gi|254475616|ref|ZP_05089002.1| diguanylate cyclase, putative [Ruegeria sp. R11] gi|214029859|gb|EEB70694.1| diguanylate cyclase, putative [Ruegeria sp. R11] Length = 593 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL S +LS++ D+D+FK+ NDN GH GD V+ + Sbjct: 410 DPLTGLFNRRHMTDSLRKGISRCQSQGSRLSLIAIDVDHFKKFNDNHGHDAGDMVLRAVG 469 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF ++ ++A A +R+ +E + +T Sbjct: 470 SVLEQACDGDEVACRPGGEEFTLILPDTTPEDALTRAELVRQAVEEVTVRYGEKALPRVT 529 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS G++ H ++ AD+ALY AK GRN+V Sbjct: 530 ISIGVSHYPSHGTMPQDLMRAADEALYEAKGRGRNQV 566 >gi|144900136|emb|CAM77000.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 559 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 10/173 (5%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQ 141 + E ++ RI +LSR D L+GL N AF + +LS +++ D+D FK Sbjct: 374 LANEQITNHERILRLSRTDSLTGLFNRRAFFEEIARRFNRLSREHKPAALIYVDLDNFKA 433 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--L 199 +ND GH GD + + D L+ V RLGG+EF A L ++E++ AI + L Sbjct: 434 VNDVHGHHTGDMALLAVRDLLLKHTRPTDLVARLGGDEF-AIWLEAAEEQIAIRRCEGML 492 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 E + + S+ +H+++ + E + ++ RAD A+Y K+ G+ Sbjct: 493 VASAELAPFSGSADKPLHMSLGVAVHAGPSAESLDELVARADTAMYEVKRDGK 545 >gi|54296012|ref|YP_122381.1| hypothetical protein lpp0029 [Legionella pneumophila str. Paris] gi|53749797|emb|CAH11177.1| hypothetical protein lpp0029 [Legionella pneumophila str. Paris] Length = 976 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N+KL+++F D+D FKQIND+ GH VGD ++ LS++ + + + RLGG+EF Sbjct: 580 NQKLAVLFLDLDEFKQINDSLGHAVGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILE 639 Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243 +++A +A R+I SQ + + ++ S GIA H + T++ AD A Sbjct: 640 NIMQDKDAESIAKKCREIC--SQPFVIESQELSVSTSIGIAIYPDHGKDAKTLMRNADTA 697 Query: 244 LYVAKKSGRNRVVCFSD 260 +Y +K G+N F + Sbjct: 698 MYQSKIRGKNNWTVFQN 714 >gi|301383055|ref|ZP_07231473.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13] gi|302060211|ref|ZP_07251752.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40] gi|302130646|ref|ZP_07256636.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 398 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 23/216 (10%) Query: 62 EYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQL-----SRIDCLSGLL 113 ++++ + +L+ +S + LL+ S L LF R+ Q+ +R D L+ L Sbjct: 184 DFVIWQANALLFVSTVMLLLMASYFLERASRLSYLFALRGRLLQVQLLEFARTDALTRLF 243 Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N L S E+ ++I+ DID+FK NDN+GHP GD + L + Sbjct: 244 NRRYQDEVLTSVWERARKKQANVAIILLDIDHFKSYNDNYGHPQGDVCLKLLCKAIQQSA 303 Query: 167 GTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI 224 V R GGEE + + +A +A L+ + ++ + + G H+TIS G+ Sbjct: 304 NDGGAVAFRFGGEE-VLVLMNADADQATKMAETLKATVAALKLPHPALGEDAHVTISLGV 362 Query: 225 AERCHKEPI---STIIYRADQALYVAKKSGRNRVVC 257 A P+ T+I AD ALY AK +GRN V C Sbjct: 363 AS--GIAPLITYDTLISAADNALYAAKHAGRNCVFC 396 >gi|294636573|ref|ZP_06714936.1| GGDEF domain protein [Edwardsiella tarda ATCC 23685] gi|291090191|gb|EFE22752.1| GGDEF domain protein [Edwardsiella tarda ATCC 23685] Length = 388 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 5/149 (3%) Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N + F++ L S N E++ ++F D D FK IND +GH GD V+ ++ +L Sbjct: 235 DPLTGLPNRTCFMNMLESLNPQQEQICVMFLDGDGFKSINDGWGHAAGDHVLIEVASRLS 294 Query: 164 VVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 V RLGG+EFA EA +A + + + I +++G + +T S Sbjct: 295 KQIRKTDMVARLGGDEFAILLRNIEHTDEAERVAQGILQAVPQP-ITLANGVHVSMTFSI 353 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSG 251 G+ +S ++ RAD A+Y +K+ G Sbjct: 354 GLTFSVPDSQLSDLLERADSAMYQSKQRG 382 >gi|156933762|ref|YP_001437678.1| RNase II stability modulator [Cronobacter sakazakii ATCC BAA-894] gi|156532016|gb|ABU76842.1| hypothetical protein ESA_01588 [Cronobacter sakazakii ATCC BAA-894] Length = 664 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 18/184 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140 SG+ + E + R+ L+ D ++GL N +A + + + ++ +V+ D+D FK Sbjct: 219 SGTDITEERRAQERLRVLANTDAITGLPNRNAILDMISDAIAKRGDTQVGVVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ++ND +GH GD+++ +S ++ + RLGG+EF A +S +AA+ A R Sbjct: 279 KVNDAYGHMFGDQLLQAVSLAILSCLEKDQVLARLGGDEFLVMATDTS--QAALEAMSSR 336 Query: 201 KIIENSQ------INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I I + +G S+ I ++ H E ++I AD A+Y AK++GR + Sbjct: 337 IISRLKHPFRIGLIEVYTGCSLGIALAPQ-----HGEDRESVIRNADTAMYTAKENGRGK 391 Query: 255 VVCF 258 F Sbjct: 392 FCVF 395 >gi|89893301|ref|YP_516788.1| hypothetical protein DSY0555 [Desulfitobacterium hafniense Y51] gi|219666570|ref|YP_002457005.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2] gi|89332749|dbj|BAE82344.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536830|gb|ACL18569.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2] Length = 526 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 1/126 (0%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 I+ +D+D FK IND +GH VGD V+ + + + + + R GG+EF G E+ Sbjct: 397 IMIYDLDSFKSINDQYGHSVGDLVLIEVVKAISGMIRSSDKIIRWGGDEFVVIFYGLQEK 456 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249 A + + + + +I ++ G I IT+S G + + E + ++ RADQALY++K Sbjct: 457 NALVFGERILSKVSDLKILVAEGKEIGITLSIGFSFFKETDEDFAKVLKRADQALYLSKS 516 Query: 250 SGRNRV 255 GRN+V Sbjct: 517 KGRNQV 522 >gi|89092552|ref|ZP_01165505.1| hypothetical protein MED92_14638 [Oceanospirillum sp. MED92] gi|89083064|gb|EAR62283.1| hypothetical protein MED92_14638 [Oceanospirillum sp. MED92] Length = 783 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 19/194 (9%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK---LSIVFF 134 LG S+ ++L SY SR D L+ L N +AF + LG K +SI++ Sbjct: 318 LGRKFQSLYEKLHNSYQESHIQSRTDALTRLPNRAAFYETASIKLGEAERKQSNISIIYI 377 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-------TPMFVGRLGGEEFAAAALGS 187 D+D FK +ND +GH +GD+++ ++ +L + + +V RL G+EF A + Sbjct: 378 DLDNFKFVNDKYGHEIGDELLKAVAIRLAHIISIKWKHTYSDEYVYRLSGDEFIAILPNA 437 Query: 188 SEQEAAILAND-LRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 +A L+ L++ + + P +T S GIA +S +I AD A+Y Sbjct: 438 GTVKAQELSQTILKQFADGYHFELGHFP---VTASIGIATYPQDGHTLSQLISNADLAMY 494 Query: 246 VAKKSGRNRVVCFS 259 AKKSG+N++ +S Sbjct: 495 QAKKSGKNKLAIYS 508 >gi|315123012|ref|YP_004065018.1| GGDEF family protein [Pseudoalteromonas sp. SM9913] gi|315016772|gb|ADT70109.1| GGDEF family protein [Pseudoalteromonas sp. SM9913] Length = 506 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 11/182 (6%) Query: 85 ISGSILKELFISYNRISQLSR---IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDY 138 + ++L+ + I +++ QL + D L+G N + L +++ DID+ Sbjct: 327 LKAAMLEGVNILQSKMGQLRQDALTDPLTGAHNRRGLYLLLDKLIQEQIPFAVLEIDIDF 386 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK++ND FGH VGD+V+ L+ + V V R GGEEF + A ++A Sbjct: 387 FKRVNDTFGHDVGDEVLKTLTCVIKQVSRKDDIVARTGGEEFLLILPNENSDSAFVIAER 446 Query: 199 LRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 LR + N+ + I +S GIA H + I + AD+ALY AK++GRN+ V Sbjct: 447 LRNEVANTPMAKVGC----INVSIGIATWPQHSDDIDQVYKCADKALYHAKETGRNKTVI 502 Query: 258 FS 259 S Sbjct: 503 AS 504 >gi|218288857|ref|ZP_03493108.1| diguanylate cyclase [Alicyclobacillus acidocaldarius LAA1] gi|218240946|gb|EED08123.1| diguanylate cyclase [Alicyclobacillus acidocaldarius LAA1] Length = 720 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 12/182 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S+L E Y + S D +GLLN+ F L N +S++ D+D+FK Sbjct: 372 SVLLENAKLYQELQDRSFRDEATGLLNYRYFYEELSRRVQASLRENRPVSVLIVDVDFFK 431 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 + ND +GH GD V+ + L R GGEEF A L +S EA +A +R Sbjct: 432 RFNDTYGHLAGDVVLREVGRILERHAAPDGVAARYGGEEF-AVLLWASAHEAYEVAEAIR 490 Query: 201 KIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYV-AKKSGRNRVVC 257 + + ++ IT+S G+A C H E ++ +AD A+Y AK+ GRNR Sbjct: 491 QDVSKLAVDFEGYHLQGITVSIGMAT-CPDHSESDRDLLVKADSAMYWGAKQRGRNRTAM 549 Query: 258 FS 259 ++ Sbjct: 550 YA 551 >gi|153002702|ref|YP_001368383.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS185] gi|151367320|gb|ABS10320.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS185] Length = 310 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 16/164 (9%) Query: 106 IDCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPVGD----KV 154 +D L+G+ N F L NE LS+V D+D+FK+ ND +GH GD +V Sbjct: 146 LDSLTGVANRRQFEQRLPEIWKHCCRNELALSVVMLDVDFFKRFNDRYGHQEGDQCLRQV 205 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +SD L FV R GGEEF + A A ++ ++ + Sbjct: 206 AKAISDSLQRATD---FVARYGGEEFICILPETKLVGAIHTAQNIVNAVQALHLEHLESS 262 Query: 215 SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 +TISAG+A K ++ T+I ADQ LY+AK+SGRN+VV Sbjct: 263 FQEVTISAGVASVLPKSDLTWQTLIETADQQLYLAKESGRNQVV 306 >gi|189425827|ref|YP_001953004.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] gi|189422086|gb|ACD96484.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] Length = 860 Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +A I + ++ LS++ DID K +ND FGH GD+++ ++ Sbjct: 431 DTLTGLYNRYFLENHLTAEIKRMDRQHQTLSLLLIDIDNLKFVNDTFGHDFGDRLLVQIA 490 Query: 160 DQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++L VGR G EFA L + A L N +++ + S++ + G + I Sbjct: 491 ERLKQAACPLSIVGRFLGNEFALVPPLAEGREHAVTLVNRIKQ--QMSELFVMDGAEVVI 548 Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 T+S G+ E T++ A+ A+Y AK+ GRN +V ++ Sbjct: 549 TVSIGVVVFPDDGEDADTLLRNAEAAMYEAKRQGRNTIVWYT 590 >gi|114564421|ref|YP_751935.1| diguanylate cyclase with GAF sensor [Shewanella frigidimarina NCIMB 400] gi|114335714|gb|ABI73096.1| diguanylate cyclase with GAF sensor [Shewanella frigidimarina NCIMB 400] Length = 327 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 15/178 (8%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLS----IVFFDIDYF 139 G I+ E +S Q + +D L+G+ N F +Y ++L ++FFD+DYF Sbjct: 151 GKIVAEELLSI----QQNTLDALTGISNRRGFELLAHKAIAYGDRLGFETCLIFFDLDYF 206 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K IND FGH GD + + L+ F + R G+EF S E + Sbjct: 207 KAINDQFGHEEGDTALKTFAGLLIDSFRESDIIARFAGDEFVVMLSQSDEVSVNSVLQRF 266 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRV 255 ++ I +Q N+ SG H+ S G+A R ++ +S Y + D+A++V K+ R Sbjct: 267 QQCI--NQHNLQSGKPYHLRYSKGVAHRQARQSLSLNDYLVKVDKAMFVDKEKHHQRT 322 >gi|332982474|ref|YP_004463915.1| GAF sensor-containing diguanylate cyclase [Mahella australiensis 50-1 BON] gi|332700152|gb|AEE97093.1| diguanylate cyclase with GAF sensor [Mahella australiensis 50-1 BON] Length = 516 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 10/167 (5%) Query: 97 YNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPV 150 Y R+ +++ +D L+ + N AF L K L+I DID FK+IND +GH Sbjct: 337 YERMHKMAILDGLTQVHNRMYFQEAFEEELHKAKGKYPLTIAIGDIDDFKKINDIYGHIA 396 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDKV+ ++ L + R GGEEF G +A + LR+ IE ++ Sbjct: 397 GDKVLKAVTSILKDHLRQGDIIARYGGEEFVIILPGVDMNQAYNIVERLRRRIEMLTVS- 455 Query: 211 SSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255 G I +TIS GIA C ++ +AD+ALY AK+ G+N+V Sbjct: 456 EEGHDISVTISFGIASYPEC-GWTTRELLRQADKALYQAKEHGKNQV 501 >gi|317404719|gb|EFV85107.1| GGDEF domain-containing protein [Achromobacter xylosoxidans C54] Length = 409 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 1/128 (0%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 +L+++ DID+FK IND GH GD + + + GRLGGEEF G Sbjct: 251 RLAVLVLDIDHFKSINDRHGHAAGDAALRHFAQVVPKAVRASDRFGRLGGEEFVLLMYGC 310 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 A + A + + +S + + G + +T S G+A + I+ RAD ALY A Sbjct: 311 DAAHALVQAQRVCDALRDSPLYL-QGQELRMTTSGGVATLQPGDSADGILARADLALYKA 369 Query: 248 KKSGRNRV 255 K+ GR+RV Sbjct: 370 KELGRDRV 377 >gi|312963549|ref|ZP_07778031.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6] gi|311282355|gb|EFQ60954.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6] Length = 701 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 87/158 (55%), Gaps = 14/158 (8%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F +S ++ L +++ D+D FK++ND+ GH GD+V+ ++S Sbjct: 278 DPLTGLLNRRGFYQAVENTLSRSERVDQSLVLLYLDLDGFKRVNDSLGHDAGDRVLRWVS 337 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHI 218 +QL + +GR+GG+EF A + AA ++ K+IE + + G + + Sbjct: 338 EQLQGCLRSYDIIGRMGGDEFTALLELEFPEHAAKISE---KLIERVSVCHQVDGLDVML 394 Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 +S GIA C + ++ ++ AD A+Y AK++GR + Sbjct: 395 GVSIGIATFPDCGSD-LNGLLRAADIAMYEAKRAGRQQ 431 >gi|300783795|ref|YP_003764086.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis mediterranei U32] gi|299793309|gb|ADJ43684.1| GGDEF domain-containing diguanylate cyclase [Amycolatopsis mediterranei U32] Length = 407 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 14/163 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL---------SIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D +GLLN + + S + ++ +++ D+D+FK+IND +GH GD V+A Sbjct: 243 DEKTGLLNTAGWHESATREHARVQRRGATGGFAVLMIDLDHFKRINDTYGHLTGDDVLAA 302 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI- 216 ++ + VGR GGEEF G + +A +R + + IS+G Sbjct: 303 VAVAISGSVRQGDTVGRFGGEEFVVLLPGIGRADVLAIAERVRVAVGELNVVISTGTGTV 362 Query: 217 ---HITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRV 255 +++S G+A P + ++ AD ALY AK++GRNRV Sbjct: 363 RVSGLSVSIGVARHPDAGPSLDDVLRAADAALYRAKEAGRNRV 405 >gi|237746855|ref|ZP_04577335.1| GGDEF domain-containing protein [Oxalobacter formigenes HOxBLS] gi|229378206|gb|EEO28297.1| GGDEF domain-containing protein [Oxalobacter formigenes HOxBLS] Length = 1937 Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 11/168 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGD 152 R+ SR+D ++GLLN A + S + ++ DID FK +ND +GH GD Sbjct: 229 RLLDKSRLDPMTGLLNKIAAEEMIRSAMAAATPDNMGVLLMIDIDSFKNVNDTWGHLAGD 288 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +VI + QL F +GR+GG+EF ++AA + R + Q N+ S Sbjct: 289 EVILQIVQQLRRTFREHDIIGRVGGDEF--HVFMRDVKDAAFVDEKARGLCLAVQ-NLFS 345 Query: 213 GPSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G + +TIS GIA + + I +AD ALY AK SG+NR V + Sbjct: 346 GENDGRVVTISIGIAITGENKTYNEIYRQADIALYRAKASGKNRFVFY 393 Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 5/92 (5%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 + D L+G+ N F E + IV DID FK IND +G GD ++ + Sbjct: 1515 AEFDVLTGIYNMQTFYDRASQMMESAPGQQFYIVRLDIDRFKVINDLYGLEEGDCLLKTI 1574 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + L GR+ G+ F A S EQ Sbjct: 1575 AAMLSEKLKERAVYGRISGDIFCACVDCSREQ 1606 >gi|227329456|ref|ZP_03833480.1| putative regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 515 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 14/181 (7%) Query: 88 SILKELFISYNRISQ-LSRIDCLSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYF 139 +I+++ S N Q L+ D L+GL N F +L EK ++++ D+D F Sbjct: 330 TIVRDELTSVNHTLQTLALFDGLTGLANRRQFDIFLQQTLLQAAEKRQCIALIMIDVDAF 389 Query: 140 KQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 K+ ND++GH GD+ + + + L + V R GGEEFA + +Q AA LA Sbjct: 390 KKYNDHYGHVAGDECLRKIGNLLSSMPRRNEDLVARYGGEEFAIIITETDKQSAAALAQR 449 Query: 199 LRKIIENSQINISSG--PSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRN 253 ++ +I + P +TISAG+ C P S++I AD ALY AK G+N Sbjct: 450 ALDLVREEKIPHETTLFPEKIVTISAGVYVFCADSPPPAASSVIDIADAALYRAKHGGKN 509 Query: 254 R 254 R Sbjct: 510 R 510 >gi|254459059|ref|ZP_05072482.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales bacterium GD 1] gi|207084330|gb|EDZ61619.1| GGDEF domain/pas/pac sensor domain protein [Campylobacterales bacterium GD 1] Length = 506 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 15/208 (7%) Query: 65 LVENLSLVIISITISLLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSAF---- 118 L+ +SL++ +I I+++ Y K+L ++ +I LS D L+ L N F Sbjct: 299 LIIEMSLIVGAIIIAMIFYYWKYVKKTEKKLNKAHEKIHSLSIKDGLTMLYNRHFFNDNV 358 Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVG 173 I++ +K++ + D D FK+ NDN+GH GD V+ +++ +F T M Sbjct: 359 PLQINNAARNKKKITFLMIDADNFKKYNDNYGHVKGDIVLKEIANTCKELFQRSTDM-CY 417 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKE- 231 R+GGEEF +++ + +A L K IEN I + +T+S G+ +E Sbjct: 418 RVGGEEFVVVFESENDEYSHSMAEKLCKSIENLDIEHKYNDGYNRVTVSIGMCTSDVQEI 477 Query: 232 -PISTIIYRADQALYVAKKSGRNRVVCF 258 I AD+ALY++K++GRNRV + Sbjct: 478 TNFDHIYANADKALYLSKENGRNRVTKY 505 >gi|51893986|ref|YP_076677.1| hypothetical protein STH2848 [Symbiobacterium thermophilum IAM 14863] gi|51857675|dbj|BAD41833.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 712 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 10/173 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+GL N AF + L Y E + +++F D+D K +ND GH GD Sbjct: 264 LKRLASQDALTGLYNRRAFQAELERYLELARHHRVRGALLFMDLDLLKYVNDTLGHQAGD 323 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ +++ + R GG+EF A + + +EA +A L + ++ + + Sbjct: 324 QVLVRVAEIIQAHLRPIDIAARHGGDEF-AILMPYTGREAVSVAESLLRAVQQEEFRV-K 381 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 G S+ +T S G+ H ++ +AD A+Y AK+SGRN V F + Sbjct: 382 GRSVTMTASIGVTFFPDHGLTAEALVAQADMAMYRAKESGRNAVAVFDGTDEQ 434 >gi|33598682|ref|NP_886325.1| hypothetical protein BPP4194 [Bordetella parapertussis 12822] gi|33574812|emb|CAE39473.1| putative membrane protein [Bordetella parapertussis] Length = 380 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 28/226 (12%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI-------- 100 + + L P L + E+ SL I+S+ + L L ++ + + +NR+ Sbjct: 158 LMICVSLGPCTTLPWFTGEH-SLWIVSVQLPLYLASMTVAAYR-----FNRMLVATMQAE 211 Query: 101 ---SQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 +L+R D L+GLLN A ++ NE ++++ D+D FK +ND GH Sbjct: 212 RDSDRLARCDALTGLLNRFGLGFALERAVAATRRDGNE-FALLYLDLDGFKSVNDTHGHA 270 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQI 208 GD+++ ++ +L + + R+GG+EF E A L + + +I E + Sbjct: 271 AGDRLLRDVAARLTELAPADAAIARIGGDEFVLLVRNCDEACATALDDRIVARICEPYDL 330 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I ++ + R H + ++ I+ AD+ALY+AK +G++R Sbjct: 331 GTPRPVRIGGSVGIALVPR-HGQEMTAILKAADRALYLAKSAGKSR 375 >gi|329928389|ref|ZP_08282259.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] gi|328937825|gb|EGG34231.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5] Length = 672 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 6/173 (3%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFIS--SLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +F + + +L+ D ++GL N + + ++++I+F D+D FK IND GH V Sbjct: 233 MFFDRHVLEKLAYQDTITGLPNRNEMNRFFRTNAETDQITILFLDLDQFKAINDTLGHNV 292 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ + +L + V R+GG+EF S A LA+D+ + I+ ++ Sbjct: 293 GDLLVQEVGKRLRQFIRSGQQVFRIGGDEFLVILKQSDPNYAQRLADDILQQIK--KVYH 350 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 G +++T+S GI+ H +T++ AD A+Y AK G+N+ C D E Sbjct: 351 IDGNELYVTVSIGISIGSVHSSDRTTLLKNADTAMYKAKGLGKNQ-QCLYDEE 402 >gi|222098820|ref|YP_002532878.1| hypothetical protein BCQ_5189 [Bacillus cereus Q1] gi|221242879|gb|ACM15589.1| conserved hypothetical protein [Bacillus cereus Q1] Length = 892 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 511 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 512 RLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 571 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 572 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTALMKNADMAMYRAKANGKNRFVFFS 626 >gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] Length = 1240 Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I QL+ D L+ L N + F LG E+ +++F D+D FK +ND GH VGD Sbjct: 1050 IHQLAYHDVLTSLPNRTLFHKQLGELMNRSHLRGEQFAVLFLDLDRFKLVNDTLGHEVGD 1109 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211 ++ +D++V + V RLGG+EF S + AA +A + ++ S++ Sbjct: 1110 LLLKAAADRIVGCLRSNDMVARLGGDEFTVILEKIESPRVAAEVAAKICSVL--SKVFAF 1167 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 SG ++I+ S GI+ E +ST++ AD A++ AK+ G + Sbjct: 1168 SGQEMYISTSIGISLYPGDGEDVSTLVKHADTAMFRAKEQGNS 1210 >gi|190573225|ref|YP_001971070.1| putative transmembrane GGDEF signalling regulatory protein [Stenotrophomonas maltophilia K279a] gi|190011147|emb|CAQ44756.1| putative transmembrane GGDEF signalling regulatory protein [Stenotrophomonas maltophilia K279a] Length = 589 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 13/165 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 + QL+ D L+GLLN A + + ++ D+D FK IND GH GD+V+ Sbjct: 419 LRQLAGTDELTGLLNRRALDEVVQQRHAGGDASAVVILLDVDRFKAINDGHGHDAGDEVL 478 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIENSQINIS 211 ++ L + R GGEEF A L Q LA LR ++ I ++ Sbjct: 479 VRVAQLLRHQLRRSDSIARYGGEEFLVLLADGDLAGGRQ----LAESLRLALQQMDIALA 534 Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 G + +T S G+AE T++ AD A+Y AK GR+RV Sbjct: 535 GGTVLRVTASFGVAEGGTDALGWRTLLRAADAAMYRAKAQGRDRV 579 >gi|160892887|ref|ZP_02073676.1| hypothetical protein CLOL250_00418 [Clostridium sp. L2-50] gi|156865446|gb|EDO58877.1| hypothetical protein CLOL250_00418 [Clostridium sp. L2-50] Length = 382 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 76/168 (45%), Gaps = 14/168 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 N +++L R D L+GL N +F SL EK I FDID+FK +ND +GH Sbjct: 217 NLMTEL-RKDPLTGLYNRRSFEESLEKEIQRTEETGEKAYIAIFDIDHFKNVNDTYGHSN 275 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS--QI 208 GD VI L L R GGEEF + + D+R Q Sbjct: 276 GDVVIKALCKMLKEKSKDYGLAFRYGGEEFVILFNNIELPKVINVVEDVRTEFRCYYFQF 335 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +SG IT S G+AE E RAD +LY AK++GRNR V Sbjct: 336 MNNSG----ITCSCGVAEYSKGESAKAWFNRADNSLYQAKEAGRNRTV 379 >gi|153939137|ref|YP_001390561.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum F str. Langeland] gi|152935033|gb|ABS40531.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum F str. Langeland] gi|295318642|gb|ADF99019.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum F str. 230613] Length = 419 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 E I ++ Q++ D L+ L N ++F+ L L+I+F D+D FK++ND Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSKKKQSLLAIMFLDLDKFKEVND 303 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203 NFGH GDK++ ++ ++ + + R GG+EF + E++ LA D+ + Sbjct: 304 NFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLARDIIGVF 363 Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I I G ++I S GI+ + H +I +AD+A+Y AKK G N+ + D Sbjct: 364 KEP-ICI-EGIYVNIKTSIGISFFPKDGH--TSQELIKKADKAMYDAKKRGSNKFQIYKD 419 >gi|148379195|ref|YP_001253736.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum A str. ATCC 3502] gi|153932586|ref|YP_001383572.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum A str. ATCC 19397] gi|153937787|ref|YP_001387121.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum A str. Hall] gi|148288679|emb|CAL82760.1| putative signaling protein [Clostridium botulinum A str. ATCC 3502] gi|152928630|gb|ABS34130.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum A str. ATCC 19397] gi|152933701|gb|ABS39200.1| putative sensory box-containing diguanylate cyclase [Clostridium botulinum A str. Hall] Length = 419 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 E I ++ Q++ D L+ L N ++F+ L L+I+F D+D FK++ND Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSKKKQSLLAIMFLDLDKFKEVND 303 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203 NFGH GDK++ ++ ++ + + R GG+EF + E++ LA D+ ++ Sbjct: 304 NFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAHEKQVEDLARDIIEVF 363 Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I I G ++I S GI+ + H +I +AD+A+Y AKK G N+ + D Sbjct: 364 KEP-ICI-EGIYVNIKTSIGISFFPKDGH--TSQELIKKADKAMYDAKKIGSNKFQIYKD 419 >gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] Length = 1499 Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I QL+ D L+ L N + F LG E+ +++F D+D FK +ND GH VGD Sbjct: 1050 IHQLAYHDVLTSLPNRTLFHKQLGELMNRSHLRGEQFAVLFLDLDRFKLVNDTLGHEVGD 1109 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211 ++ +D++V + V RLGG+EF S + AA +A + ++ S++ Sbjct: 1110 LLLKAAADRIVGCLRSNDMVARLGGDEFTVILEKIESPRVAAEVAAKICSVL--SKVFAF 1167 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 SG ++I+ S GI+ E +ST++ AD A++ AK+ G + Sbjct: 1168 SGQEMYISTSIGISLYPGDGEDVSTLVKHADTAMFRAKEQGNS 1210 >gi|34452029|gb|AAQ72480.1| sensory box/GGDEF family protein [Bacillus cereus] Length = 607 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 13/177 (7%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 168 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSAND-VAVMFLDLDRFKKIND 226 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 227 RLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 286 Query: 204 ENSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 287 -NKPFFI-QGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVFFS 341 >gi|148259583|ref|YP_001233710.1| diguanylate cyclase [Acidiphilium cryptum JF-5] gi|146401264|gb|ABQ29791.1| diguanylate cyclase [Acidiphilium cryptum JF-5] Length = 377 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 8/170 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 ++L + ++ L+ D L+GL N + + + L + D+D+FK+IN Sbjct: 204 RQLRDALKQVQILATRDELTGLPNRRHALELIERETARACRSGAPLCVAILDLDHFKRIN 263 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH VGD+V+ + +V R GGEEF S+ +A + LR+ + Sbjct: 264 DTFGHGVGDEVLRTFGREGRLVLRADNIFARWGGEEFILVMPDSTLIDAQTIVRRLREHM 323 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + +S T SAGIAE E + RAD ALY AKK GR+ Sbjct: 324 ASPEC-WASCLRARTTFSAGIAEFLVGETLDETFIRADAALYEAKKLGRD 372 >gi|120556696|ref|YP_961047.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120326545|gb|ABM20860.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 572 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 13/164 (7%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+R+D L+GL N I + +++ DIDYFK IND+ GH GD Sbjct: 401 LQRLARVDALTGLKNRRGLDEVMNEEIQRAEREQKGFGLLWLDIDYFKAINDSQGHQAGD 460 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ ++ L GR GG+EF +A +R +E Q + + Sbjct: 461 EILCRVALWLKAAIRPYDHPGRWGGDEFVVLLSPCDAATLEQIACRIRASVE--QESQRT 518 Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 G S+ I++ C E + ++ ADQALY AK++GRNRV Sbjct: 519 GTSVTISVGGYF---CRPGEDLDALLRNADQALYEAKRNGRNRV 559 >gi|109896772|ref|YP_660027.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109699053|gb|ABG38973.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 378 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 93/178 (52%), Gaps = 11/178 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140 +L+EL + + +L+ D L+ L N F + L Y LS++ D+D FK Sbjct: 195 EMLQELHEKNSLLGELAVQDPLTKLNNRRYFSNKLEVETARSLRYQHPLSLLVVDVDDFK 254 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +INDN GH VGD+V+ +S + V R GG+EF + + +++ +A+ + Sbjct: 255 KINDNDGHLVGDEVLIEISQLIAQQLRAGDVVCRYGGDEFVILLVEACAEQSREIADRIC 314 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + ++ ++ +S +T+S G A+ +P+ + +AD+ +Y +KK G+N+V F Sbjct: 315 QSVDRTKFGRASH---KVTVSIGYAQYV-GQPLGDFMQQADKMMYTSKKRGKNQVAFF 368 >gi|116491495|ref|YP_811039.1| Signal transduction diguanylate cyclase [Oenococcus oeni PSU-1] gi|116092220|gb|ABJ57374.1| Signal transduction diguanylate cyclase [Oenococcus oeni PSU-1] Length = 371 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 13/162 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +F + NEK + DID+FK ND++GH G++V+ + S+ Sbjct: 207 DALTGLRNFFSFNKMIT--NEKNDPSRYWVFLMLDIDHFKSFNDSYGHLEGNRVLKYFSN 264 Query: 161 QLVVVF----GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ F + R GGEEF E+ ++ ND R+ + G ++ Sbjct: 265 KIKSYFDENISATYRIYRYGGEEFCIVIENFLIDESFLVINDFREELSKDDSVTEKGLAV 324 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ S G+A + H I I AD+ALY AKK GR +C Sbjct: 325 PVSFSCGVASTQAHDGNIRKTISFADKALYEAKKDGRGENIC 366 >gi|325293377|ref|YP_004279241.1| periplasmic sensor diguanylate cyclase [Agrobacterium sp. H13-3] gi|325061230|gb|ADY64921.1| periplasmic sensor diguanylate cyclase [Agrobacterium sp. H13-3] Length = 579 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 6/159 (3%) Query: 103 LSRIDCLSGLLNHSAF---ISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIA 156 LS D L+G+ N A + ++ S E+L ++ DID+FK IND +GH +GD + Sbjct: 410 LSETDALTGVSNRRALEKTVRAILSGEEQLQALGVMIVDIDHFKSINDRYGHAMGDLALQ 469 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + L + R GGEEF S A A+ LR++IE I+ SG S+ Sbjct: 470 KTATLLRGALRKNDILARYGGEEFVVVLQDVSHATATATADRLRRLIEAQIIDEQSGLSL 529 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + E +I AD LY AK++GRNRV Sbjct: 530 TASFGVVWQEARAINSWDELIAIADDRLYEAKRAGRNRV 568 >gi|296135035|ref|YP_003642277.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12] gi|295795157|gb|ADG29947.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12] Length = 799 Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 10/166 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVG 151 Y ++ D L+GL N AF+ L + ++ L++ D+D FK +ND GH VG Sbjct: 195 YKTYRTIAHRDDLTGLANRRAFMQKLSATLVKHPHQALAVGMIDLDRFKIVNDRLGHSVG 254 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210 D+++ + +L V + RLGG+EF G +S + +A+ L K +E + + Sbjct: 255 DQLLVAVGQRLRSVLRQTDVLARLGGDEFVVMFTGYTSLDQLRAVADRLVKSMEQ-EFTV 313 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254 S ++ I +S GI + +P+ T++ RAD A+Y +K+ GR + Sbjct: 314 QSH-ALQIGLSLGIVIQQQAQPVDALTLMRRADLAMYASKEGGRQQ 358 >gi|239908176|ref|YP_002954917.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239798042|dbj|BAH77031.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 596 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 12/174 (6%) Query: 100 ISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + +LSR D L+GL N H A + Y + DID+FKQIND GH G Sbjct: 422 LERLSRTDSLTGLPNRRRAEEALHEALVR-FRRYGHGFVVAMADIDHFKQINDAIGHDAG 480 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D + + + V R GGEEF ++E A L + + + ++ + Sbjct: 481 DAALRHAARAMAGSLRETDLVARWGGEEFLLFMPDTAEAGARRLLARICDCLASDGLSCA 540 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + S +T + G A E + ++ RADQALY K GRNRV+ D E+ T Sbjct: 541 A-LSAPLTATFGAAAIRPGESLDELLRRADQALYRGKAMGRNRVIW--DGEDGT 591 >gi|119866421|ref|YP_936373.1| diguanylate cyclase [Mycobacterium sp. KMS] gi|126432958|ref|YP_001068649.1| diguanylate cyclase [Mycobacterium sp. JLS] gi|119692510|gb|ABL89583.1| diguanylate cyclase [Mycobacterium sp. KMS] gi|126232758|gb|ABN96158.1| diguanylate cyclase [Mycobacterium sp. JLS] Length = 361 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 27/175 (15%) Query: 107 DCLSGLLNHSA-------FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN A +SS + L++ D+D FKQ+ND+ GH +GD+ + ++ Sbjct: 198 DPLTGLLNRRAVYQQIEQLLSSHRDRHVHLAVAVVDLDDFKQLNDSHGHAIGDEALVAVA 257 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L G VGRLGGEEF A L EA + + +++ + +++ P +T Sbjct: 258 QALRAGAGEGAVVGRLGGEEFVLAEL----LEAGQIDHWAQRMC--TAVDVVPFP---VT 308 Query: 220 ISAGIAERCHKEP--------ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 S G+A C P I +I AD A+Y AK++G N+ F + + C Sbjct: 309 ASVGVAAVCLPLPADDDAQTVIHMLIGAADHAMYAAKRAGGNQ---FRHDDRSAC 360 >gi|28871900|ref|NP_794519.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28855153|gb|AAO58214.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 366 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 9/159 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ +L+ D L+ + N AF+ S S E ++ DID FK IND GH +GD++ Sbjct: 176 SKFRELAETDYLTSIPNRRAFMESFDSLIKGGESGYLIMLDIDNFKLINDRHGHEIGDRI 235 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L G+ GR+GGEEF G E A + + +++E + N P Sbjct: 236 LCSMAACLRATSGSHC-AGRIGGEEFGVLITGGDELTA---CDYILRLLETVRANFD--P 289 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + S G+ +S + AD+++Y+AK++G++ Sbjct: 290 PYNYSCSVGMVRFSAASTMSEALSMADKSMYIAKRNGKD 328 >gi|229015952|ref|ZP_04172914.1| Sensory box/GGDEF [Bacillus cereus AH1273] gi|229022170|ref|ZP_04178721.1| Sensory box/GGDEF [Bacillus cereus AH1272] gi|228739171|gb|EEL89616.1| Sensory box/GGDEF [Bacillus cereus AH1272] gi|228745345|gb|EEL95385.1| Sensory box/GGDEF [Bacillus cereus AH1273] Length = 569 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS--IVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ EK+ +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF ++ E LA + + Sbjct: 195 HMLGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTQDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|254507818|ref|ZP_05119948.1| ggdef family protein [Vibrio parahaemolyticus 16] gi|219549191|gb|EED26186.1| ggdef family protein [Vibrio parahaemolyticus 16] Length = 490 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 10/182 (5%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYF 139 Y ++ +L + ++ D L+ + N + + EK S++ DID+F Sbjct: 304 YRVNEVISQLESKQQELEWIAHHDALTKVGNRRSLQQHWQTLVEKQPKHTSLLLIDIDFF 363 Query: 140 KQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 K ND++GH GD V+ ++ L + FV R GGEEF S A Sbjct: 364 KPFNDHYGHVEGDNVLQQVATALKEAPTESSKFVARFGGEEFCVVLSNDSPLNNRQEAEW 423 Query: 199 LRKIIENSQINISSGP-SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNR 254 LR +E +I P + H+T S G+A+ C +P + + AD+ALY AK +GRN+ Sbjct: 424 LRAAVETLKIRHHYSPIAAHLTASIGVAD-CGLQPLGDLQDLFLVADRALYEAKDAGRNQ 482 Query: 255 VV 256 VV Sbjct: 483 VV 484 >gi|218508127|ref|ZP_03506005.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5] Length = 357 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 10/155 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 S N++++L+ D L+G LN S+LGS + +S++ DID+FKQ+ND GH GD Sbjct: 207 SRNQLTELAHHDPLTGALNRGGLAQHASALGS--QPISLLIMDIDHFKQLNDRHGHAAGD 264 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ + + + R GG+EF A S ++A +A +R E + + + Sbjct: 265 EILRLFARVSRGIMRPQDLLARQGGDEFLAVLKNLSREDAMAIAERIR--FEFAAV-VMQ 321 Query: 213 GPSIHI--TISAGIAERCHKEPISTIIYRADQALY 245 P + + T+S G+A R ++I++AD+ALY Sbjct: 322 RPDLAVFPTLSIGVATRISGGDFESLIHKADEALY 356 >gi|119472850|ref|ZP_01614757.1| putative orphan protein; putative conserved domain [Alteromonadales bacterium TW-7] gi|119444682|gb|EAW25989.1| putative orphan protein; putative conserved domain [Alteromonadales bacterium TW-7] Length = 985 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 25/174 (14%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 S ++ QL+ D L+GL N + F ++ G Y S+ +FD+D FK+IND Sbjct: 544 SQRKMEQLAYFDTLTGLANRTFFRMQLRKSLALAERGHY--AFSLFYFDLDEFKRINDTL 601 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE- 204 GH GD+++ ++++L + + RLGG+EFA G S++ A +AN +++ + Sbjct: 602 GHDAGDQLLIQVANRLKKRLRSEDTIARLGGDEFAVLLSGIESQEHATDVANTIQQTLNM 661 Query: 205 -----NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 N+++ IS+ I + + E ++ AD A+Y AK+ GRN Sbjct: 662 PIMLGNNEVIISASIGITMAPYDSLEE-------DQLLKHADLAMYEAKEKGRN 708 >gi|298507384|gb|ADI86107.1| sensor histidine kinase response receiver diguanylate cyclase [Geobacter sulfurreducens KN400] Length = 585 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F SL Y S+ DID+FKQ ND GH GD+V+ + Sbjct: 419 DPLTGLFNLRQFWLSLDHELKRARRYRRNCSLAMIDIDWFKQYNDCHGHLRGDEVLREAA 478 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218 T R GGEEF ++ + A + A LR+ +E + + P + Sbjct: 479 AVFRGCIRTSDIAARYGGEEFVVIMPETTRELALLAAEKLRRAVEEHLFPLRETQPGGAL 538 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S GIA E ++ AD+ALY AK+ GRNRVV Sbjct: 539 TVSIGIATFPDDAEDGRELVEAADRALYRAKEGGRNRVV 577 >gi|284042169|ref|YP_003392509.1| diguanylate cyclase [Conexibacter woesei DSM 14684] gi|283946390|gb|ADB49134.1| diguanylate cyclase [Conexibacter woesei DSM 14684] Length = 650 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 15/188 (7%) Query: 87 GSILKELFIS------YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVF 133 GS+ + IS ++++ + + D L+GL NH F +++ + + L ++ Sbjct: 453 GSLAAQTGISLENVELHDQVKRQAVTDELTGLFNHRRFQEVITIEVAAAQRFGQPLGLLM 512 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DID FKQ+ND +GH GD V+ ++ L+ R GGEE A A + A Sbjct: 513 VDIDNFKQVNDTYGHQQGDVVLREVARILLDSSREIDEPARYGGEEMAVALPQTDLDGAF 572 Query: 194 ILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 +A +R +E + G +H+T+S G+A ++ AD ALY AK++G+ Sbjct: 573 TIAERVRTAVEELAVPRLDGDGLLHVTVSCGVAASASAGK-DQLVAAADVALYTAKRTGK 631 Query: 253 NRVVCFSD 260 N+ V +D Sbjct: 632 NKTVRATD 639 >gi|291613781|ref|YP_003523938.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1] gi|291583893|gb|ADE11551.1| diguanylate cyclase [Sideroxydans lithotrophicus ES-1] Length = 456 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 61/125 (48%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +I+ DID+FK IND GH GD V+ SD + F+ R GGEE + Sbjct: 327 AILLLDIDHFKNINDTHGHDSGDMVLQQASDLVTSSVRVGDFIFRYGGEELLVVLVEIGR 386 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKK 249 +A +A +R+ + + G + +T+S G+A I+ AD ALY AK Sbjct: 387 DQALQVAETIRERFAAEPMRVGDGKVMQVTVSIGVAAYNGHPDYERIVKDADDALYRAKN 446 Query: 250 SGRNR 254 SGRNR Sbjct: 447 SGRNR 451 >gi|126738794|ref|ZP_01754490.1| diguanylate cyclase, putative/response regulator [Roseobacter sp. SK209-2-6] gi|126719975|gb|EBA16682.1| diguanylate cyclase, putative/response regulator [Roseobacter sp. SK209-2-6] Length = 462 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 5/132 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ D+D+FK+IND++GHPVGD V+ + +L + R+GGEEF G+ E Sbjct: 322 ALMLADLDHFKRINDSYGHPVGDAVLIEAAKRLQAELRPVDLLARVGGEEFMIVLPGADE 381 Query: 190 QEAAILANDLRKIIENSQINISS-GPSIHITISAG-IAERCHKEP---ISTIIYRADQAL 244 EA + A DL I + +I + +TIS G + R + + ++ +I AD+AL Sbjct: 382 IEAGVAAVDLCNAINSRPFHIDGIREPVEVTISIGAVIGRGNDDATQSVNDLISAADRAL 441 Query: 245 YVAKKSGRNRVV 256 Y AK +GRN+V Sbjct: 442 YDAKNAGRNQVT 453 >gi|331019636|gb|EGH99692.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 398 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 23/216 (10%) Query: 62 EYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQL-----SRIDCLSGLL 113 ++++ + +L+ +S + LL+ S L LF R+ Q+ +R D L+ L Sbjct: 184 DFVIWQANALLFVSTVMLLLMASYFLERASRLSYLFALRGRLLQVQLLEFARTDALTRLF 243 Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N L S E+ ++I+ DID+FK NDN+GHP GD + L + Sbjct: 244 NRRYQDEVLTSVWERARKKQANVAIILLDIDHFKSYNDNYGHPQGDVCLKLLCKAIQQSA 303 Query: 167 GTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI 224 V R GGEE + + +A +A L+ + ++ + + G H+TIS G+ Sbjct: 304 NDGGAVAFRFGGEE-VLVLMNADADQATKMAETLKATVAALKLPHPALGEDAHVTISLGV 362 Query: 225 AERCHKEPI---STIIYRADQALYVAKKSGRNRVVC 257 A P+ T+I AD ALY AK +GRN V C Sbjct: 363 AS--GIAPLITYDTLISAADNALYAAKHAGRNCVFC 396 >gi|310780622|ref|YP_003968953.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] gi|309749945|gb|ADO84605.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] Length = 288 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGL-------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 IS S D L+GL LN I ++++++SI F D+D FK IND +GH GD Sbjct: 126 ISDKSMHDHLTGLYNRHYLELNLDTLIKKSLAFDKEISIAFIDLDNFKNINDKYGHKRGD 185 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ F+ + R GG+EF +S ++A + + ++ + + Sbjct: 186 EVLEFMGKLIKSSIRETDNAIRYGGDEFIILYQDTSTEKALEITERINTKMKKNDFLYEN 245 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+IS+GI E +I RAD+A+Y +KKSG++++ Sbjct: 246 ----KISISSGIVSYQKNENWKELINRADKAMYDSKKSGKDKI 284 >gi|291527043|emb|CBK92629.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale M104/1] Length = 346 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 16/233 (6%) Query: 36 SIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93 +I + V IA I L+ + TP Y L+ ++++++S+ +IS + L++ + +L + Sbjct: 119 AILLCCVYAIALIILYMLDGFYTPLYKLDSVVIKSISIAMISGVVFLIITCMM-CLLHFM 177 Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGH 148 + + ++ D L+ L N ++ L + E + + DID FK+IND+FGH Sbjct: 178 SSEEGAMEKQAQFDALTELPNRFYMMAKLKNLFEAEKQGEYFLAMIDIDDFKKINDSFGH 237 Query: 149 PVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 VGD + L+ +V G + R GGEEF + ++LR I + Sbjct: 238 NVGDDALKMLARTIVNKARGVELSYCRWGGEEFLLLGKCVDGEVPKNFLDELRVEINSKS 297 Query: 208 INISSGPS-IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S G + +TI AG + + +KE I+ + D+ LYV K +G+N+VVC Sbjct: 298 FWTSKGSGRMTVTIGAGKYKVGQDYKEWINFV----DKQLYVGKCTGKNKVVC 346 >gi|291279140|ref|YP_003495975.1| signal transduction response regulator [Deferribacter desulfuricans SSM1] gi|290753842|dbj|BAI80219.1| signal transduction response regulator [Deferribacter desulfuricans SSM1] Length = 299 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 5/165 (3%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVG 151 +Y R+ + D L+G+LN + +S L S N+++ I+ DID FK+IND +GH VG Sbjct: 131 AYARLYNDAIHDFLTGVLNRRSIMSELESLSNNPNDEIGIIIIDIDNFKKINDTYGHLVG 190 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ +S+ + +VGR GGEEF + E+ +A +R I N +I Sbjct: 191 DEVLKEISNIISKSLRKDDYVGRYGGEEFLVILPKLNINESFTVAERIRNSIANHNFHIG 250 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IT+S G++ + I + AD+ALYVAK++G+N+ V Sbjct: 251 D-IDFKITVSLGVSSLKKFKNIKDALNEADKALYVAKRTGKNKTV 294 >gi|284991925|ref|YP_003410479.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160] gi|284065170|gb|ADB76108.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160] Length = 370 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 18/169 (10%) Query: 99 RISQ-LSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 R S+ L+ D L+G LN AF+ L + + D+D FK +ND GH GD Sbjct: 211 RTSEVLAATDPLTGCLNRRAFLDRLDRAAADADGGWVVCLVDLDGFKGVNDGSGHAAGDA 270 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAA---AALGSSEQEAAILANDLRKIIENSQINI 210 V+ ++ L V V RLGG+EFA AA G E AA L + + + S + Sbjct: 271 VLRAVTAALSGVVRETDTVARLGGDEFAVLAEAAPGEEEPLAARLRDAVAAVGAGSGVTA 330 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S G ++ + G R ++ RADQA+Y +K +G NRV + Sbjct: 331 SVGATV---VRPGDEGR-------EVLSRADQAMYRSKGAGGNRVTALA 369 >gi|89901272|ref|YP_523743.1| diguanylate cyclase [Rhodoferax ferrireducens T118] gi|89346009|gb|ABD70212.1| diguanylate cyclase [Rhodoferax ferrireducens T118] Length = 422 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 11/176 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL + +++ LS D L+GL N F ++ L+++ D+D+FK ND Sbjct: 225 ELQAANSQLETLSTTDGLTGLANRRRFDKYWAEEWQRALRQATPLAVIMMDVDHFKTYND 284 Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 ++GH GD+ + + + L V R GGEEF G+S +A A + I Sbjct: 285 HYGHQQGDECLRRVGEVLRATVRRAGELAARYGGEEFVVVMPGASLAQAQETAESILAAI 344 Query: 204 ENSQINISSGPSIH-ITISAGIAERCHKEP--ISTIIYRADQALYVAKKSGRNRVV 256 Q+ +S P +TIS G+A + ++ AD ALY AK GRNRVV Sbjct: 345 RAEQMPHASSPVASVVTISLGVAAGTPGPAGDRARMLNEADVALYDAKHQGRNRVV 400 >gi|56477012|ref|YP_158601.1| hypothetical protein ebA2804 [Aromatoleum aromaticum EbN1] gi|56313055|emb|CAI07700.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 237 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 11/176 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFK 140 +L+EL R+ LS D L+GL N + L + + I+ DID+FK Sbjct: 63 GMLREL---NQRLEWLSHRDALTGLPNRRHALMRLREEHVRAQRGGRSFVIMIIDIDHFK 119 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH +GD+ + ++ +L R GGEEF + A A LR Sbjct: 120 DINDTWGHELGDQALTAVAARLAASVREYDVCARWGGEEFLVMLPDTEPCTAGDNAERLR 179 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + N + I + IT+S G+ E ++ + R D ALY AK GR+R+ Sbjct: 180 ACVGNDPVIIGE-RQLRITVSLGVGSCRLGEELAEFMKRVDDALYFAKHEGRDRIA 234 >gi|84392305|ref|ZP_00991732.1| GGDEF domain [Vibrio splendidus 12B01] gi|84376425|gb|EAP93305.1| GGDEF domain [Vibrio splendidus 12B01] Length = 657 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 18/174 (10%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N + ++S N+ ++++ D+D FK +NDN+GH G Sbjct: 489 RLEHLAHHDALTGLANRAQLYKVMDDVVTSSHYSNQHFAVIYLDLDGFKYVNDNYGHDAG 548 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ +S +L+ V RL G+EF +++ A LA L ++I Q Sbjct: 549 DEILKEVSSRLLSQVRAGDLVARLSGDEFVLIIKQTNKVLLAKLAERLLELI--GQEVTH 606 Query: 212 SGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S+H+ S GI +ER I I+ AD+A+Y AK+ G+ + V D Sbjct: 607 KQRSLHVGASLGIHLVDGSER----DIDVILKVADEAMYQAKRKGKGQFVFSRD 656 >gi|319787671|ref|YP_004147146.1| response regulator receiver modulated diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1] gi|317466183|gb|ADV27915.1| response regulator receiver modulated diguanylate cyclase [Pseudoxanthomonas suwonensis 11-1] Length = 429 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 8/164 (4%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + L+ D L+GL N F + + + L++V D+D+FK +ND +GH GD Sbjct: 264 LQDLATRDFLTGLPNRRHFLDQAERLVPRMRDVRQPLAMVMLDLDHFKHVNDTWGHETGD 323 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + + ++ + + R GGEEF G +E LR +E+ ++ + Sbjct: 324 RALRAVASTISAHARPQDHIARFGGEEFCMLLPGLEGRELHEHLEKLRLRVEDLRVPVDQ 383 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + ++IS G + + +++ AD+ LY+AK GRN+V+ Sbjct: 384 G-ELRLSISIGACNARVGDTLHSLLAEADRRLYLAKAGGRNQVI 426 >gi|163847215|ref|YP_001635259.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|163668504|gb|ABY34870.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] Length = 263 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 Y + L+ D L+G+ N AF +L Y L+++ DID FK ND +GH Sbjct: 85 YAEVEALAVTDSLTGIANRRAFDRALEREFVRARHYGYPLALIMVDIDSFKHYNDTYGHL 144 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + ++ L FV R GGEEFA + +Q A +A +R+ E S Sbjct: 145 AGDDRLRAVAQLLAQSVREVDFVARYGGEEFAIILTNTDKQTAIAVAEQIRRKAEMSCPE 204 Query: 210 ISSG-PSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +G P T+S G+A + P++ ++ AD A AK++G+NRV Sbjct: 205 PLNGLPVSGYTLSLGVAAFPDDAQTPVA-LLLAADNAELAAKRAGKNRV 252 >gi|254239213|ref|ZP_04932536.1| hypothetical protein PACG_05404 [Pseudomonas aeruginosa C3719] gi|126171144|gb|EAZ56655.1| hypothetical protein PACG_05404 [Pseudomonas aeruginosa C3719] Length = 823 Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 17/177 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151 R+S + D L+GL N F L E+L +++F D+D FK +ND GH G Sbjct: 373 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 432 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ + L + RLGG+EF ++A +A+ LRK I++ S Sbjct: 433 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWS 492 Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262 P + T+S G+ H P IST+ + AD A Y+AK+ GRNRV F D+E Sbjct: 493 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 545 >gi|107100318|ref|ZP_01364236.1| hypothetical protein PaerPA_01001343 [Pseudomonas aeruginosa PACS2] gi|218893172|ref|YP_002442041.1| hypothetical protein PLES_44571 [Pseudomonas aeruginosa LESB58] gi|218773400|emb|CAW29212.1| hypothetical protein PLES_44571 [Pseudomonas aeruginosa LESB58] Length = 818 Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 17/177 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151 R+S + D L+GL N F L E+L +++F D+D FK +ND GH G Sbjct: 369 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 428 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ + L + RLGG+EF ++A +A+ LRK I++ S Sbjct: 429 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWS 488 Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262 P + T+S G+ H P IST+ + AD A Y+AK+ GRNRV F D+E Sbjct: 489 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 541 >gi|15596058|ref|NP_249552.1| hypothetical protein PA0861 [Pseudomonas aeruginosa PAO1] gi|9946759|gb|AAG04250.1|AE004521_1 hypothetical protein PA0861 [Pseudomonas aeruginosa PAO1] Length = 818 Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 17/177 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151 R+S + D L+GL N F L E+L +++F D+D FK +ND GH G Sbjct: 369 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 428 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ + L + RLGG+EF ++A +A+ LRK I++ S Sbjct: 429 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWS 488 Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262 P + T+S G+ H P IST+ + AD A Y+AK+ GRNRV F D+E Sbjct: 489 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 541 >gi|88859993|ref|ZP_01134632.1| putative GAF sensor protein [Pseudoalteromonas tunicata D2] gi|88817987|gb|EAR27803.1| putative GAF sensor protein [Pseudoalteromonas tunicata D2] Length = 692 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 14/175 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 +S+++RID L+G+ N + + +++V D+D FKQIND+ GH GD Sbjct: 266 LSEVARIDPLTGIANRLVLDDRIAQALARSQRTGHLMAMVLLDLDEFKQINDSLGHQAGD 325 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINI 210 K++ L+++L V V RLGG+EF + S EQ +L + II+ + + Sbjct: 326 KLLKILANRLTKVVRKTDTVARLGGDEFCIIFEKIDSQEQCRDMLK---KLIIQVEKSTL 382 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFSDIENN 264 SG +I+ S G A C + +Y RAD A+Y AKK R + + E Sbjct: 383 LSGHAINPKASIG-ACICRGDIDKQELYKRADAAMYQAKKMTRGSIKIYQHNEEQ 436 >gi|254245147|ref|ZP_04938469.1| hypothetical protein PA2G_06035 [Pseudomonas aeruginosa 2192] gi|126198525|gb|EAZ62588.1| hypothetical protein PA2G_06035 [Pseudomonas aeruginosa 2192] Length = 818 Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 17/177 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151 R+S + D L+GL N F L E+L +++F D+D FK +ND GH G Sbjct: 369 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 428 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ + L + RLGG+EF ++A +A+ LRK I++ S Sbjct: 429 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWS 488 Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262 P + T+S G+ H P IST+ + AD A Y+AK+ GRNRV F D+E Sbjct: 489 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 541 >gi|319936951|ref|ZP_08011361.1| response regulator receiver modulated metal dependent phosphohydrolase [Coprobacillus sp. 29_1] gi|319807887|gb|EFW04466.1| response regulator receiver modulated metal dependent phosphohydrolase [Coprobacillus sp. 29_1] Length = 680 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 19/169 (11%) Query: 96 SYNRISQLSRI---DCLSGLLNHSA------FISSLGSYNEKLSIVFFDIDYFKQINDNF 146 Y ++++L RI D L+ L NH I S Y E +++ D+DYFK ND F Sbjct: 515 EYTKMNKLKRIAAQDSLTKLSNHKTARQQIEMIMSKHPY-EHYAMILIDLDYFKNANDFF 573 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+V+ + S +L+ G + R+GG+EF + E + R+I + Sbjct: 574 GHMFGDEVLRYFSKKLLDCIGEKSIISRVGGDEFMVFIKYEGDVEKRV-----REIHDCV 628 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254 P I++S GIA IY+ ADQALY AKKSGR + Sbjct: 629 SCRYKEYP---ISLSMGIALYPENGDDYEDIYKHADQALYSAKKSGRKQ 674 >gi|288549810|ref|ZP_05968278.2| cellulose synthesis regulatory protein [Enterobacter cancerogenus ATCC 35316] gi|288317511|gb|EFC56449.1| cellulose synthesis regulatory protein [Enterobacter cancerogenus ATCC 35316] Length = 535 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 23/204 (11%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRI----------DCLSGLLNHSAFISSLG 123 ISI ++LL S +L + +S + + D L+ L N A Sbjct: 327 ISIVLALLWALFSAMLLISWLLIRRMVSNMYTLQHSLQWQAWHDPLTRLHNRGALFERAN 386 Query: 124 -------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 + + S++ D+D+FK IND FGH GDKV++ + + GR+G Sbjct: 387 RLARECQAQSRPFSVIQIDLDHFKNINDRFGHQAGDKVLSHAAGLIAGGLRPCDVAGRVG 446 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---- 232 GEEF G + +AA +A +R I++ +I + ++ I+ S G++ C E Sbjct: 447 GEEFCVVLPGLALPQAAAIAERIRSRIDSKEILLKKSTTLRISASFGVS--CAHEKGNYN 504 Query: 233 ISTIIYRADQALYVAKKSGRNRVV 256 + AD LY AK+ GRN+VV Sbjct: 505 FDQLQSIADLRLYQAKQRGRNQVV 528 >gi|28868223|ref|NP_790842.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213967310|ref|ZP_03395459.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] gi|28851460|gb|AAO54537.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213928152|gb|EEB61698.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] Length = 413 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 23/216 (10%) Query: 62 EYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQL-----SRIDCLSGLL 113 ++++ + +L+ +S + LL+ S L LF R+ Q+ +R D L+ L Sbjct: 199 DFVIWQANALLFVSTVMLLLMASYFLERASRLSYLFALRGRLLQVQLLEFARTDALTRLF 258 Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N L S E+ ++I+ DID+FK NDN+GHP GD + L + Sbjct: 259 NRRYQDEVLTSVWERARKKQANVAIILLDIDHFKSYNDNYGHPQGDVCLKLLCKAIQQSA 318 Query: 167 GTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI 224 V R GGEE + + +A +A L+ + ++ + + G H+TIS G+ Sbjct: 319 NDGGAVAFRFGGEEV-LVLMNADADQATKMAETLKATVAALKLPHPALGEDAHVTISLGV 377 Query: 225 AERCHKEPI---STIIYRADQALYVAKKSGRNRVVC 257 A P+ T+I AD ALY AK +GRN V C Sbjct: 378 AS--GIAPLITYDTLISAADNALYAAKHAGRNCVFC 411 >gi|332993642|gb|AEF03697.1| TPR repeat- and GGDEF domain-containing signaling protein [Alteromonas sp. SN2] Length = 648 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 4/187 (2%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--NEKLSI 131 +S TI+ +L ++ ++ + +++ D L+ LN +++ S + ++I Sbjct: 460 LSATIAFILVLVASLLVYRQSRQRKKYHRMASTDHLANCLNRRGILATANSKLAQQNITI 519 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 D+DYFK+IND +GH VGD V+ ++ GR GGEE+ S E+ Sbjct: 520 AIVDLDYFKRINDEYGHDVGDLVLIAFANAAKETLSKHDDFGRYGGEEWLFILHSSDEKV 579 Query: 192 AAILANDLRKIIENSQINISS-GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249 ++ L + NI + + +T S G++ + T I RAD ALY AK+ Sbjct: 580 VRLMFEKLAATYQKYCNNIDALKGDLSMTFSVGVSLGNKSNRTLDTSIKRADDALYQAKE 639 Query: 250 SGRNRVV 256 +GRN+VV Sbjct: 640 NGRNQVV 646 >gi|332534917|ref|ZP_08410737.1| hypothetical GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332035652|gb|EGI72142.1| hypothetical GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 328 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 22/192 (11%) Query: 92 ELFISYNRISQLSR----------IDCLSGLLNHSAFISSLGS----YNEKLS------I 131 +L ++YN I L D L+G N F S + Y+EK + Sbjct: 137 KLAVAYNEIKDLKEALNISKEAADTDTLTGFYNRGKFDSDIVKFCFEYSEKAQEDSLAVL 196 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + FDID+FK+ ND+FGH GD+V+ ++ ++ + R GGEEF A + + Sbjct: 197 IMFDIDHFKRFNDDFGHQKGDEVLRLVAKKVRENTTETANIYRYGGEEFCITAYFDTIND 256 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISA--GIAERCHKEPISTIIYRADQALYVAKK 249 A+ +R I I + ISA G+A S ++ RAD+ALY+AK Sbjct: 257 IIAFADCIRLAIAKLAIRKKHDVTAKRAISASFGLAILRPFTNSSVLVERADRALYIAKT 316 Query: 250 SGRNRVVCFSDI 261 GRNR+ DI Sbjct: 317 HGRNRIEIAPDI 328 >gi|302386653|ref|YP_003822475.1| diguanylate cyclase [Clostridium saccharolyticum WM1] gi|302197281|gb|ADL04852.1| diguanylate cyclase [Clostridium saccharolyticum WM1] Length = 547 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 13/167 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 + +LS+ D L+GLLN + I ++L + ++ DID FKQ+NDN+GH GDK + Sbjct: 379 LQELSKQDSLTGLLNRATAIHAIRNTLKNSQGHHILIMLDIDRFKQLNDNYGHQFGDKAL 438 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSG 213 + +L GRLGG+EF + + DL +EN S I + Sbjct: 439 HRAASRLKSALRRDDIFGRLGGDEFIILL------KDVAYSMDLYARLENLCSLIGSALE 492 Query: 214 PSIHITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVCFS 259 P HI+ S G A + +Y +AD ALY AKK GR++ + Sbjct: 493 PEAHISGSLGTAAYPEDGTVFEELYEKADIALYHAKKHGRSQYAVYE 539 >gi|294665478|ref|ZP_06730762.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604732|gb|EFF48099.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 790 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 9/165 (5%) Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D ++GL+N L S ++ F D+D+FK +ND FGH VGD+ + Sbjct: 357 ARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLC 416 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +D + + + ++GRLGG+EFA + +A I+ + + + G + Sbjct: 417 HFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQIVLERMHGAL-GQPWSHQGGRPL 475 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + S G+ E R ++ ++ AD A + AK+ GRNR+ CF++ Sbjct: 476 TPSCSFGVVEIRQGVSDLNALMTAADLACHAAKEEGRNRIRCFNE 520 >gi|294625116|ref|ZP_06703761.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600580|gb|EFF44672.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 788 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 9/165 (5%) Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D ++GL+N L S ++ F D+D+FK +ND FGH VGD+ + Sbjct: 357 ARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLC 416 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +D + + + ++GRLGG+EFA + +A I+ + + + G + Sbjct: 417 HFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQIVLERMHGAL-GQPWSHQGGRPL 475 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + S G+ E R ++ ++ AD A + AK+ GRNR+ CF++ Sbjct: 476 TPSCSFGVVEIRQGVSDLNALMTAADLACHAAKEEGRNRIRCFNE 520 >gi|258406476|ref|YP_003199218.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692] gi|257798703|gb|ACV69640.1| diguanylate cyclase [Desulfohalobium retbaense DSM 5692] Length = 252 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 21/184 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 ++ +EL + +S++S ID L+G+ N F ++ + N+ L++VF D+DYFK Sbjct: 65 TLNEELNAHKDVLSEMSYIDGLTGIANRRRFNETVEAEWQRGLRNNQALALVFLDLDYFK 124 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAA-ILAND 198 Q NDN+GH +GD + ++ L V R GGEEF L ++QE A + Sbjct: 125 QYNDNYGHNLGDTCLIDVAKALQQSAKRCNDLVARYGGEEF-VILLPDTDQEGAFAVGQK 183 Query: 199 LRKIIENSQINISSGPSIH-ITISAGI------AERCHKEPISTIIYRADQALYVAKKSG 251 + I N +I + P +T S G+ AER ++ I T AD LY AK++G Sbjct: 184 VLDNIRNLEIPHAFSPIAQVVTASVGVAVTIPGAERTPQDLIQT----ADAQLYAAKEAG 239 Query: 252 RNRV 255 RN++ Sbjct: 240 RNQM 243 >gi|153875139|ref|ZP_02003066.1| two-component response regulator [Beggiatoa sp. PS] gi|152068397|gb|EDN66934.1| two-component response regulator [Beggiatoa sp. PS] Length = 355 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 16/198 (8%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL---NHSAFIS-------SLGSYNE 127 ++L L ++ + + N +L R++ L GL N F L + Sbjct: 158 VNLQLNHLKKQLEQRNVAFENANKELKRLNALDGLTLIANRCRFDEYLTQKWYELEQQPQ 217 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALG 186 LS++F D+DYFK ND +GH GD+ + ++ + V G+ V R GGEEF L Sbjct: 218 PLSLIFADVDYFKHYNDQYGHLAGDECLRKIAQSINKVAKGSSDLVARYGGEEF-VVLLP 276 Query: 187 SSEQEAAI-LANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQ 242 + + E I +A +++ I+N +I + S S ++++S GIA +S +I AD+ Sbjct: 277 NRQAEGTIQIAENIQIAIQNLKIVHAKSSISDYVSMSMGIASLIPNPNLSPEKLIKMADE 336 Query: 243 ALYVAKKSGRNRVVCFSD 260 ALY AK GRN +V + Sbjct: 337 ALYQAKHQGRNCIVVMGN 354 >gi|313201284|ref|YP_004039942.1| PAS/PAC sensor-containing diguanylate cyclase [Methylovorus sp. MP688] gi|312440600|gb|ADQ84706.1| diguanylate cyclase with PAS/PAC sensor [Methylovorus sp. MP688] Length = 498 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 17/175 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N F L KL+++F D+D FK++ND+FGH +GD Sbjct: 325 LNKLAYYDALTGLPNRLLFEDRLHQGMFACKRQGSKLAVLFVDLDKFKEVNDSFGHHIGD 384 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRKIIENSQ 207 ++ ++ +L V RLGG+EF + + + SE+ L LR Sbjct: 385 LLLKEIARRLRSQLREEDTVSRLGGDEFVILLNSISCVEDSEKVVRNLLAALRAPFTTES 444 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + + SI I I H + +TI+ +ADQA+Y+AK+ + FS+I+ Sbjct: 445 VTLYQEASIGICIYPD-----HAQDEATIVNKADQAMYIAKRDSQRHYAFFSEID 494 >gi|300696950|ref|YP_003747611.1| modulator of Rnase II stability, signal transduction protein eal-ggdef domains (gmr) [Ralstonia solanacearum CFBP2957] gi|299073674|emb|CBJ53194.1| putative modulator of Rnase II stability, signal transduction protein eal-ggdef domains (gmr) [Ralstonia solanacearum CFBP2957] Length = 589 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 21/183 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGH 148 + RI L+ D L+GLLN A +L N ++S++F D+D FK IND GH Sbjct: 142 AQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNGTRVSVMFLDLDRFKNINDTLGH 201 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+++ ++ +L V RLGG+EF ++ R++ E Sbjct: 202 QFGDQLLREVAARLQACAREADTVARLGGDEFVVML-------ESLDGMGTRRVAERILA 254 Query: 209 NISS-----GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261 I + G + + +S GIA H + +T++ +AD A+Y+AK+ GRN F SD+ Sbjct: 255 AIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQTFTSDL 314 Query: 262 ENN 264 ++ Sbjct: 315 DDR 317 >gi|260769788|ref|ZP_05878721.1| GGDEF family protein [Vibrio furnissii CIP 102972] gi|260615126|gb|EEX40312.1| GGDEF family protein [Vibrio furnissii CIP 102972] Length = 478 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 13/168 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151 YN Q R+D L+G+ N AF L + E +++ D+D FK +ND +GH G Sbjct: 318 QYNAHHQQLRLDTLTGIQNRRAFDLDLAAMAENQQSPYALLLIDVDKFKHVNDTWGHQFG 377 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+A ++ L T + R+GG+EFAA + + A L L +++ + + Sbjct: 378 DNVLARVAQVLTKNLDT-HSIYRIGGDEFAALVPVNDD---APLGEQLNRLVLDMRHQKW 433 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 H+T+S G++ ++ AD+ALY +K++GR+ C+S Sbjct: 434 REQGCHVTLSIGVS--IGPNTPCELVNHADKALYRSKENGRD---CWS 476 >gi|163795443|ref|ZP_02189410.1| GGDEF domain protein [alpha proteobacterium BAL199] gi|159179429|gb|EDP63960.1| GGDEF domain protein [alpha proteobacterium BAL199] Length = 561 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 28/220 (12%) Query: 46 ANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105 + L+ G T + E + + LV ++ + + L ++ ++ + LS Sbjct: 340 GTVVLWRSGATAVWDEEEVAL----LVEVADQLGIALQQVA---------AHEHLRTLSS 386 Query: 106 IDCLSGLLNHSAFISSLGSY-NEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAF 157 +D ++GLLN AF ++ + N S +V+ D+D FK++ND GH VGDK + Sbjct: 387 VDAMTGLLNRRAFDEAITARLNPSTSTAAGPGTLVYVDLDNFKKVNDTRGHQVGDKALIH 446 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ--INISSGPS 215 L+D L T RLGG+EFA G A A +IIE + + S P Sbjct: 447 LADILKRQSHTGDIGARLGGDEFALWMEGIDTSTAPERAE---RIIEMGKELLTYSGSPD 503 Query: 216 IHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 I +S G+A E E +I RAD +Y K+SG+ Sbjct: 504 HPIGLSIGMAVFEPGSGETRENLIARADAVMYEIKRSGKG 543 >gi|218529510|ref|YP_002420326.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium chloromethanicum CM4] gi|218521813|gb|ACK82398.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium chloromethanicum CM4] Length = 811 Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 11/172 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+ L+ D L+GL N + F G ++ +++ D+D FK++ND GH GD Sbjct: 372 IAYLATRDPLTGLSNRAVFHDVAGEACTASMRGGPRVHLLYLDLDGFKKVNDTAGHCAGD 431 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ ++D+L V RLGG+EFA EA ILA + I + + Sbjct: 432 DLLRQVADRLCASVDANAQVFRLGGDEFAILHRSRESAEAEILAEAV--IASLHRPYLIE 489 Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF-SDIE 262 G I +S GIA + ++ +AD ALY AK++GR R CF +D+E Sbjct: 490 GMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWHCFEADLE 541 >gi|170727794|ref|YP_001761820.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169813141|gb|ACA87725.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 518 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 20/169 (11%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-----YNEKLS--IVFFDIDYFKQINDNFGHPVGDK 153 +L+ +D L+ L N +A + +KL + DID+FK IND+FGH GDK Sbjct: 354 QKLNLLDSLTQLPNRAALEERMDQEFRNFQRQKLPLWVAVADIDHFKTINDSFGHSTGDK 413 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + ++ L FV R GGEEF + A D+ +++ + + S Sbjct: 414 TLQVIAMALKNSLRDTEFVARYGGEEFVLLI-------PEVNAIDIEQLLNRVREKVKSI 466 Query: 214 P------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P I +T+S G A+ E I+ RAD ALY AK R+RV+ Sbjct: 467 PFKFKNQRITVTVSIGAAQILENELINETFERADAALYRAKHESRDRVI 515 >gi|120556575|ref|YP_960926.1| response regulator receiver modulated diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120326424|gb|ABM20739.1| response regulator receiver modulated diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 561 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 86/182 (47%), Gaps = 11/182 (6%) Query: 89 ILKELFISYNRISQLSRI---DCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDY 138 +++ + + +R QLS + D L+ LL HS + ++ + V DID+ Sbjct: 379 LIRAVQMRCHRARQLSELMNRDSLTRLLKHSVIKQEVERERQRCTRGDYSSVAVLLDIDH 438 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FKQ+ND +GH GD VI L++ L +GR GGEEF L E AA+ Sbjct: 439 FKQVNDTWGHAQGDVVIRTLANLLRNRLRESDAIGRYGGEEF-LVVLPHCEPSAALRLMS 497 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + S H+T SAG+A+ II AD+ALY K++GRN V + Sbjct: 498 GILESFSELEFSSEEEVFHVTFSAGVAKINDFSAGDQIIEAADKALYERKRNGRNGVTLY 557 Query: 259 SD 260 +D Sbjct: 558 TD 559 >gi|330972724|gb|EGH72790.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 397 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 25/212 (11%) Query: 68 NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120 N L + ++ + L+ Y S + LF R+ Q+ +R D L+ L N Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250 Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV---FGTPM 170 + S E ++I+ DID+FK NDN+GHP GD + L +L G Sbjct: 251 VMASVWEHARNTPANVAIILLDIDHFKSYNDNYGHPQGDTCLRLLCQKLQQSAHDHGAVA 310 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 F R GGEE +G Q + + E + G + +TIS G+A C Sbjct: 311 F--RFGGEEVLVLMIGDVVQAREVAGALQSAVAELKLPHPVLGENALVTISLGVA--CAT 366 Query: 231 EPIST---IIYRADQALYVAKKSGRNRVVCFS 259 P+++ +I AD ALY AK++GRN VCF+ Sbjct: 367 APLTSAENLIGAADNALYAAKRAGRN-CVCFA 397 >gi|325291390|ref|YP_004267571.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271] gi|324966791|gb|ADY57570.1| diguanylate cyclase [Syntrophobotulus glycolicus DSM 8271] Length = 358 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 123/278 (44%), Gaps = 51/278 (18%) Query: 10 SIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENL 69 ++W + + F+P+ M++ +I TV+F+ L Y + Y LV L Sbjct: 98 ALWFAN-GGISGFTPYLSMVFAAI-------TVVFLNG------KLKSRYSISYFLVL-L 142 Query: 70 SLVIIS--------ITISLLLGYISGSILKEL---FIS---------YNRISQ----LSR 105 SL+ I +S L GY +I ++ FI+ YNRI + LS Sbjct: 143 SLITIQGLYPDSVYFPVSRLQGYWDKAIFFQMVFFFIANLLYVYSEEYNRIHKKAVKLSL 202 Query: 106 IDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D ++GL N + + K S++ DID FK IND +GH GDK I + Sbjct: 203 TDEMTGLYNWRFVRNHIQKDLNKSIRTGVQCSVLMIDIDNFKIINDRYGHQAGDKAIKMI 262 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L GR GG+EF + Q A +A +RK +E + + + + Sbjct: 263 AGILKTSVRNIDIAGRYGGDEFFVLLPEINAQAAETIAERIRKTVEETFLK----DGMPL 318 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G+A+ + I AD+ +Y AK +G+N+V+ Sbjct: 319 TVSIGVAD-IQGSTLDEIFRNADKNMYKAKIAGKNKVL 355 >gi|213581981|ref|ZP_03363807.1| hypothetical protein SentesTyph_12574 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 349 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 111/235 (47%), Gaps = 30/235 (12%) Query: 19 LESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGL-------TPFYGLEYILVE---- 67 + S+ + F++++ + F+ ++ ++ + + Y L P + L +L Sbjct: 110 MWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLW-LTALLASVQLN 168 Query: 68 ---NLSLVIISITISLLLGY---ISGSILKELFISYN-------RISQLSRIDCLSGLLN 114 N+ +++ +T++ +L Y I E ++ Y R+ ++ D L+G N Sbjct: 169 QYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTAN 228 Query: 115 HSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM- 170 + S LG E +++ D+DYFK NDN+GH GD +A ++ + TP Sbjct: 229 RRSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPAD 288 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHITISAGI 224 V R GGEEF SS EAA++A ++ + E + +++S S +T+S GI Sbjct: 289 LVARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGI 343 >gi|77165487|ref|YP_344012.1| PAS sensor diguanylate cyclase/phophodiesterase [Nitrosococcus oceani ATCC 19707] gi|254434956|ref|ZP_05048464.1| PAS fold family [Nitrosococcus oceani AFC27] gi|76883801|gb|ABA58482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosococcus oceani ATCC 19707] gi|207091289|gb|EDZ68560.1| PAS fold family [Nitrosococcus oceani AFC27] Length = 811 Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 9/172 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I+ + D L+GL+N F +++L + + + ++ +FD+D FK IND GH G Sbjct: 382 QITHQATHDSLTGLVNRREFEHRLERVLATLKAESAEYALCYFDLDRFKVINDTCGHVAG 441 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ +S+ L + RLGG+EF S ++A +A + K IE+ Q Sbjct: 442 DELLRQVSEVLRGQIRKRDTLARLGGDEFGVLLEHCSLKQAQRVATAIHKAIEDFQFTW- 500 Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 G S I +S G+ I+ ++ AD A Y AK GRNR+ + + + Sbjct: 501 EGKSFRIGVSIGLVPITKASMGIAVVLKAADTACYAAKNKGRNRIHVYHETD 552 >gi|27377700|ref|NP_769229.1| hypothetical protein blr2589 [Bradyrhizobium japonicum USDA 110] gi|27350845|dbj|BAC47854.1| blr2589 [Bradyrhizobium japonicum USDA 110] Length = 618 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 28/194 (14%) Query: 84 YISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFF 134 Y+ G I + E S RIS L+ D L+ L N SAF + L E +++ Sbjct: 170 YVVGVIEDVTEQLASQARISHLAHHDALTDLPNRSAFNAELDERLELAQEALTSFAVLSL 229 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+D FK++ND FGHPVGD ++ + + FV R+GG+EF ++ +E + Sbjct: 230 DLDRFKEVNDVFGHPVGDMLMRAAA-DRLAAEADGAFVARIGGDEFMILMPDNARREDML 288 Query: 195 -LANDLRKIIEN--------SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 LA L ++I SQ+ +S G +++ A T++ AD ALY Sbjct: 289 TLAERLVEVIGKELEIDDYLSQVGVSVGIAVYPDDGVDAA---------TLLANADSALY 339 Query: 246 VAKKSGRNRVVCFS 259 AK+ GR RV F Sbjct: 340 RAKREGRARVRFFE 353 >gi|304395432|ref|ZP_07377315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pantoea sp. aB] gi|304356726|gb|EFM21090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pantoea sp. aB] Length = 867 Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 15/172 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 RI LSR D L+GL N + L + + L++V D+D F+ IN+ +GH GD Sbjct: 435 RIQFLSRHDVLTGLSNRMQLLEFLTLHLAITDGSAPLTLVTLDLDQFRPINETWGHAAGD 494 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V++ ++ +L G V RL G+EF L E +A +++ Q IS+ Sbjct: 495 EVLSQIAQRLKRCIGPQELVARLSGDEF---VLVLREANRERVAQRCAQLVHEVQQPIST 551 Query: 213 GPSIH-ITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSD 260 G +H +TIS GIA C + S ++ AD AL A+ +GRN+ V +++ Sbjct: 552 GQHVHYLTISMGIA--CAPQDASHPEALLEMADIALNEARDAGRNQWVWYAN 601 >gi|291518050|emb|CBK73271.1| diguanylate cyclase (GGDEF) domain [Butyrivibrio fibrisolvens 16/4] Length = 254 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 18/169 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L D L+GL N L K + DID+FK++ND FGH +GD Sbjct: 92 IQTLVEYDALTGLNNRRYADKKLAEIRIRAVELGIKYCVCISDIDFFKKVNDTFGHEMGD 151 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAAILANDLRKIIENSQI 208 +V+ ++++L R GGEE F L + +E ++ N++R I Sbjct: 152 EVLRRVAEKLKAGMVGKGIAARWGGEEFLLIFDGRELDIARRELELIMNEVRTI------ 205 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 IT+S G+ E I + RAD LY AK+ GRN++VC Sbjct: 206 -WVPDSDRQITMSFGLTALQPGEDIDDALKRADDNLYQAKEGGRNQIVC 253 >gi|255318187|ref|ZP_05359426.1| two-component response regulator [Acinetobacter radioresistens SK82] gi|262379605|ref|ZP_06072761.1| two-component response regulator [Acinetobacter radioresistens SH164] gi|255304733|gb|EET83911.1| two-component response regulator [Acinetobacter radioresistens SK82] gi|262299062|gb|EEY86975.1| two-component response regulator [Acinetobacter radioresistens SH164] Length = 855 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 13/157 (8%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F ++L ++ L + + D+D FK +ND+ GH +GD++I +S Sbjct: 429 DHLTGLANRQTFETNLQQAFETQHHSSKPLFLCYIDLDDFKPLNDSLGHLIGDQIIKSVS 488 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND--LRKIIENSQINISSGPSIH 217 D+L + T F+GR G+EFA + +++ I + L+ + QI+ IH Sbjct: 489 DRLQALLQTGDFLGRFAGDEFALLMVNRNKRSEVITTAEEILKLFTQPFQIDEH---KIH 545 Query: 218 ITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ S GI A+ C + S ++Y A A+ AK+ GRN Sbjct: 546 LSASIGIVADDCSIQRSSELLYHAVLAMKEAKRQGRN 582 >gi|212639188|ref|YP_002315708.1| PAS, GGDEF and EAL domain-containing protein [Anoxybacillus flavithermus WK1] gi|212560668|gb|ACJ33723.1| Multidomain signal transduction protein (contains PAS, GGDEF and EAL domains) [Anoxybacillus flavithermus WK1] Length = 594 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 13/174 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148 + ++++LS D L+ + N F L YN++L+I+F D+D FK IND GH Sbjct: 156 TMEQLARLSNYDLLTNVPNRQLFTKRLQHLLDTARRYNQQLAILFLDLDRFKYINDELGH 215 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQ 207 GD ++ ++++L + T + R+GG+EF + QEA +A +IIE+ Q Sbjct: 216 YSGDILLQKVANRLKKLLRTKDTLARIGGDEFVVILPKLKDIQEAVSIAE---QIIESLQ 272 Query: 208 IN-ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + I+I+ S GI+ + + ++ RAD+A+ AK+SGRNR ++ Sbjct: 273 APFLLHHKDIYISASIGISVYPNDGDDGEMLLRRADRAMQKAKESGRNRFELYT 326 >gi|54310062|ref|YP_131082.1| hypothetical protein PBPRA2946 [Photobacterium profundum SS9] gi|46914501|emb|CAG21280.1| hypothetical protein PBPRA2946 [Photobacterium profundum SS9] Length = 284 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 11/163 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFG 147 I Y R+ ++ D LSGL N S+F + + +E+ L +V FD+D FKQ+ND +G Sbjct: 125 IEYRRVKNMAMRDHLSGLGNRSSFEQDIQHSIAMSERRDVGLVVVIFDLDNFKQVNDRYG 184 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GDKVI + L T RLGG+EF ++++ A +A + +I + Q Sbjct: 185 HLDGDKVIRRFAIALKHAVRTSDRCYRLGGDEFIMLLQPATDKSAQKVAERVHHLINDDQ 244 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 + ++ ++ S G A+ + ++I RAD+ LY K++ Sbjct: 245 ----ALRTLKVSSSHGYAQYQKGDTTLSLIDRADRQLYKQKRN 283 >gi|83747638|ref|ZP_00944674.1| Signal transduction protein EAL [Ralstonia solanacearum UW551] gi|83725690|gb|EAP72832.1| Signal transduction protein EAL [Ralstonia solanacearum UW551] Length = 580 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 21/183 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGH 148 + RI L+ D L+GLLN A +L N ++S++F D+D FK IND GH Sbjct: 132 AQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNGTRVSVMFLDLDRFKNINDTLGH 191 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+++ ++ +L V RLGG+EF ++ R++ E Sbjct: 192 QFGDQLLREVAARLQACAREADTVARLGGDEFVVML-------ESLDGMGTRRVAERILA 244 Query: 209 NISS-----GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261 I + G + + +S GIA H + +T++ +AD A+Y+AK+ GRN F SD+ Sbjct: 245 AIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQTFTSDL 304 Query: 262 ENN 264 ++ Sbjct: 305 DDR 307 >gi|117922446|ref|YP_871638.1| response regulator receiver modulated diguanylate cyclase [Shewanella sp. ANA-3] gi|117614778|gb|ABK50232.1| response regulator receiver modulated diguanylate cyclase [Shewanella sp. ANA-3] Length = 315 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 11/167 (6%) Query: 106 IDCLSGLLNHSAFISSLG------SYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G+ N F L S N+ LS++ D+D+FK+ ND +GH GD+ + + Sbjct: 147 LDSLTGVANRRQFEQRLPEIWRHCSRNQAYLSVIMLDVDFFKRYNDRYGHQEGDQCLRLV 206 Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +D + + P + R GGEEF + A LA + + + Sbjct: 207 ADAVKGMLKRPNDLIARYGGEEFICILPEAKLSGAMRLAQAMVDAVHALHLEHLDSEFGE 266 Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +T+SAGIA + ++ +++ ADQ LY+AK +GRN+VV DIE Sbjct: 267 VTVSAGIATIQPLAEQSWESLVEVADQQLYIAKHNGRNQVVGI-DIE 312 >gi|325971874|ref|YP_004248065.1| diguanylate cyclase [Spirochaeta sp. Buddy] gi|324027112|gb|ADY13871.1| diguanylate cyclase [Spirochaeta sp. Buddy] Length = 403 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 16/165 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGD 152 ++ + ++ D L+GL N F + S+ S N+ K+++++ D+D FK IND +GH +GD Sbjct: 232 QMEKYAKYDMLTGLPNRRYFFERLESVVSENQGANKIAVLYIDLDGFKTINDTYGHQIGD 291 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA-----LGSSEQEAAILANDLRKIIENSQ 207 KV+ + +L F RLGG+EFA A S++Q AA + L+ + Sbjct: 292 KVLVAVGSRLAESISESDFAARLGGDEFAIIASNIQNYASAQQFAANVQTVLQSTVYMEN 351 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 I S SI + + E E T++ +AD A+Y AK++ + Sbjct: 352 IAYSVKASIGLAVYPD--EGADSE---TLLRKADAAMYEAKRNSK 391 >gi|239831289|ref|ZP_04679618.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239823556|gb|EEQ95124.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 423 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 10/166 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG----SYNEK---LSIVFFDIDYFKQINDNFGHP 149 + +++++ D L+GL N F+ L +++E +++ DID FK ND +GH Sbjct: 235 HGDMARVAETDELTGLPNRRHFMKRLARAELAFSEDGVAYTVMLIDIDNFKHWNDTYGHA 294 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD+ + +D V + + R GG+EF+ G E EA +A ++ + ++ + Sbjct: 295 LGDQALVHFADVGVDILNRRGVLARFGGDEFSILLPGMHEHEATEIAREIVGAVNHTPL- 353 Query: 210 ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRN 253 + +G + +T+S GIA + S + RAD ALY K++GRN Sbjct: 354 VFNGRKLILTVSIGIASEEPGDERSDLDVFARADLALYKLKQAGRN 399 >gi|229514709|ref|ZP_04404170.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae TMA 21] gi|229348689|gb|EEO13647.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae TMA 21] Length = 359 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 19/164 (11%) Query: 103 LSRIDCLSGLLNH---SAFISSLGSY----NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G LN F+ + NE I DID FK +ND +GH GDKVI Sbjct: 178 LSTRDALTGTLNRHQLDVFLKKCLRHRQLANESAVIAVIDIDRFKSVNDLYGHDTGDKVI 237 Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 Q+V + T + RLGG+EF +S +A ++ + + I+ + Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+AE + RADQALY +KK G+NRV Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRADQALYHSKKMGKNRV 333 >gi|229491950|ref|ZP_04385770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodococcus erythropolis SK121] gi|229321163|gb|EEN86964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodococcus erythropolis SK121] Length = 791 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 16/185 (8%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQIN 143 GS + + I +L+ ID L+GL N +F + L S ++ + D+D FK IN Sbjct: 338 GSDITHSYHQRQNILRLAEIDSLTGLRNRYSFNAQLSSRIRDGHRVWLAILDLDNFKSIN 397 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-------ALGSSEQEAAILA 196 D GH +GD V+ ++ +L V + GRLGG+EFA A +GS+++ + Sbjct: 398 DRLGHHIGDDVLRDVASRLHSVLRSNEICGRLGGDEFAIAFDDVAFDDIGSADE----VE 453 Query: 197 NDLRKIIENSQINIS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254 + I+++ + S G I I S G + + ++ AD ALY AK+SGRN+ Sbjct: 454 KRFQTILDSFERPFSLVGNQIRIRASLGYGSMPDDADSLEDLVIVADLALYHAKESGRNQ 513 Query: 255 VVCFS 259 + F Sbjct: 514 IRAFD 518 >gi|222870335|gb|EEF07466.1| predicted protein [Populus trichocarpa] Length = 330 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 23/186 (12%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------------ISSLGSYNEKLS---IVFFDI 136 ++ +Y + S D L+GLLN F ++ G E + + DI Sbjct: 133 VYHNYQSLLDYSERDALTGLLNRKTFDEQFLRLSLQEAPMAMPGVATEDVPGQWLAAIDI 192 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND FGH GD+V+ +++ L F V R GGEEF S A Sbjct: 193 DHFKRINDRFGHLYGDEVLILVANILRSCFDAKDRVFRFGGEEFVVLLRSVSLVNARKAL 252 Query: 197 NDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 LR +E+ + P + IT+S G A P+ ++ ADQALY AK+ GRN+ Sbjct: 253 ERLRHDVESYEF-----PQVGRITVSTGFAAMGTGAPVE-VLGHADQALYHAKEHGRNQT 306 Query: 256 VCFSDI 261 + D+ Sbjct: 307 WYYGDL 312 >gi|108797336|ref|YP_637533.1| diguanylate cyclase [Mycobacterium sp. MCS] gi|108767755|gb|ABG06477.1| diguanylate cyclase [Mycobacterium sp. MCS] Length = 370 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 27/175 (15%) Query: 107 DCLSGLLNHSAFISS----LGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN A L S+ ++ L++ D+D FKQ+ND+ GH +GD+ + ++ Sbjct: 207 DPLTGLLNRRAVYQQIEQLLSSHRDRHVHLAVAVVDLDDFKQLNDSHGHAIGDEALVAVA 266 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L G VGRLGGEEF A L EA + + +++ + +++ P +T Sbjct: 267 QALRAGAGEGAVVGRLGGEEFVLAEL----LEAGQIDHWAQRMC--TAVDVVPFP---VT 317 Query: 220 ISAGIAERCHKEP--------ISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 S G+A C P I +I AD A+Y AK++G N+ F + + C Sbjct: 318 ASVGVAAVCLPLPADDDAQTVIHMLIGAADHAMYAAKRAGGNQ---FRHDDRSAC 369 >gi|71278350|ref|YP_268068.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71144090|gb|AAZ24563.1| sensory box/GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 428 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 18/179 (10%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDY 138 +L+EL +S SR D L+ L N F L S + S++ DID+ Sbjct: 255 KNQLLEELILS-------SRRDPLTELYNRRYFTELLHSEITRSRRFKRGFSLLMLDIDH 307 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK IND +GH GD + S + + R GGEEF + A ++A Sbjct: 308 FKSINDRYGHACGDAALIAFSKAVTNSIREVDTICRWGGEEFLVLLPEIPKVTAMVVAEK 367 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRV 255 +RK IEN + I G I +T+S G+ E + I S++I + DQ LY AK +GRN++ Sbjct: 368 IRKNIENLE-TIYEGDLIKVTVSIGL-EYFSGDAIEMSSMINKVDQILYRAKDTGRNKI 424 >gi|83594095|ref|YP_427847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] gi|83577009|gb|ABC23560.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] Length = 820 Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 10/172 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------LSIVFFDIDYFKQINDNFGHP 149 +R++ L++ D L+GL+N +F L + ++++ D+D FK +ND+ GH Sbjct: 370 DRLTFLAQRDPLTGLINRRSFFDDLEKAVARAGRFPAAGVAVISIDLDRFKYVNDSLGHQ 429 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD ++ +++ L + RLGG+EFA G + + A +A LR + + + Sbjct: 430 AGDCLLKEVAEVLFGRLRETDLLARLGGDEFAVLLHGVNREGALHVAEALRLCLADYAFS 489 Query: 210 ISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G S+ I S G+A + ++ RAD A+ +AK++GRNRV F + Sbjct: 490 Y-DGKSVEIGCSLGVATWAADVDDPEDLLARADMAMRLAKRAGRNRVHLFEE 540 >gi|221196391|ref|ZP_03569438.1| diguanylate cyclase [Burkholderia multivorans CGD2M] gi|221203063|ref|ZP_03576082.1| diguanylate cyclase [Burkholderia multivorans CGD2] gi|221176997|gb|EEE09425.1| diguanylate cyclase [Burkholderia multivorans CGD2] gi|221182945|gb|EEE15345.1| diguanylate cyclase [Burkholderia multivorans CGD2M] Length = 492 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 10/168 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 ++ I L+R D L+GL N +S + +++++ D+D FK IND FG Sbjct: 310 LTEQHIRHLARHDALTGLPNRHELHAELERMLSRPRRPDTAVAVMYLDLDGFKAINDRFG 369 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+++ ++++L R+GG+EF A ++ + +A L I ++ Sbjct: 370 HQAGDELLTQVAERLGRTLRDGTLAARIGGDEFVVAVDDTTMDACSRVAAQLIAQI-SAP 428 Query: 208 INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254 +S G ++ IS GIA + H P +I +AD ALY AK +G+ R Sbjct: 429 YTLSIGETVRFGISIGIALDDGHGTP-DELIRQADSALYDAKSAGKGR 475 >gi|71907293|ref|YP_284880.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica RCB] gi|71846914|gb|AAZ46410.1| diguanylate cyclase with PAS/PAC sensor [Dechloromonas aromatica RCB] Length = 820 Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 10/170 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDN 145 L ++ + +L+ D L+ L N A L +L + DID+FK IND Sbjct: 652 LLMANQELERLAHQDALTKLPNRLAANERLRQEFLRLKRTGSPYCVFMMDIDHFKMINDT 711 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD V+ + L FV R GGEEF A + + A + A +R I Sbjct: 712 YGHETGDHVLEHFAVTLTGALRATDFVARFGGEEFIALMPDTEIEGAMVAAEKVRIAIHQ 771 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + ++ I + E +++ + RAD ALY +KK GRNRV Sbjct: 772 EKFPVVGCVTVSIGVGNSRTEDANED---ETVRRADAALYRSKKDGRNRV 818 >gi|30018813|ref|NP_830444.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579] gi|296501388|ref|YP_003663088.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] gi|29894355|gb|AAP07645.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579] gi|296322440|gb|ADH05368.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] Length = 567 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149 L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND GH Sbjct: 135 LRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHM 194 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD +++ ++ +L V G + RLGG+EF + + + LA + + Sbjct: 195 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 252 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 253 MLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|332305197|ref|YP_004433048.1| diguanylate cyclase with beta propeller sensor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172526|gb|AEE21780.1| diguanylate cyclase with beta propeller sensor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1071 Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 72/153 (47%), Gaps = 9/153 (5%) Query: 120 SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 S L S + L D+D+FKQ+ND +GH GD V+ + L VF ++ R GGEE Sbjct: 885 SQLVSKDADLIFFLMDLDHFKQVNDRYGHSAGDAVLVAVKSILETVFRDTDYLLRWGGEE 944 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPIS--- 234 F A A LA LR I+ + NI +I++T S G + +P + Sbjct: 945 FLIVARFVDRSSAETLAERLRCSIQAHRFNIEDNVAINVTCSIGFSVFPLLSNQPTALNW 1004 Query: 235 -TIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 I AD LY AKKS RN V D+ TC Sbjct: 1005 ERTIDVADLCLYAAKKSSRNTWVGLLDL---TC 1034 >gi|326402790|ref|YP_004282871.1| hypothetical protein ACMV_06420 [Acidiphilium multivorum AIU301] gi|325049651|dbj|BAJ79989.1| hypothetical protein ACMV_06420 [Acidiphilium multivorum AIU301] Length = 377 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 8/170 (4%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 ++L + ++ L+ D L+GL N + + + L + D+D+FK+IN Sbjct: 204 RQLRDALKQVQILATRDELTGLPNRRHALELIERETARARRSGAPLCVAILDLDHFKRIN 263 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D FGH VGD+V+ + +V R GGEEF S+ +A + LR+ + Sbjct: 264 DTFGHGVGDEVLRTFGREGRLVLRADNIFARWGGEEFILVMPDSTLIDAQTIVRRLREHM 323 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + +S T SAGIAE E + RAD ALY AKK GR+ Sbjct: 324 ASPEC-WASCLRARTTFSAGIAEFLVGETLDETFIRADAALYEAKKLGRD 372 >gi|323497242|ref|ZP_08102262.1| putative regulatory components of sensory transduction system [Vibrio sinaloensis DSM 21326] gi|323317817|gb|EGA70808.1| putative regulatory components of sensory transduction system [Vibrio sinaloensis DSM 21326] Length = 318 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 13/166 (7%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L++ D L+ + N S I+ G + LS++ D+D+FK NDN+GH GD Sbjct: 148 LAKLAQEDGLTKVKNRRFIDEKLSEMIAIHGRHGMPLSLILLDVDHFKAYNDNYGHIQGD 207 Query: 153 KVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIEN-SQIN 209 K + ++ L +F VGR GGEEF L ++Q+ I A +++ +E+ + ++ Sbjct: 208 KCLVEIATALRELFVRNGELVGRYGGEEF-VVLLSHTDQDKLIRDAQRIQQRLESLALVH 266 Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 SG + +T+S G+ +E ++ + ADQALY AK+SGRN Sbjct: 267 EFSGVANSVTVSQGLLFINPTGRESAESLYHSADQALYRAKESGRN 312 >gi|260222025|emb|CBA31177.1| hypothetical protein Csp_C27240 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 361 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 27/211 (12%) Query: 73 IISITISLLLGYISGSILK---ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSL 122 +IS+ +S +G ++ ++ +Y+ + S+ D L+GL N A S L Sbjct: 139 LISMRLSQPMGEHDQELINGILRVYSNYHALLDESQRDRLTGLYNRHAMDLNIDRMWSVL 198 Query: 123 G-----------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 G S + ++ DID+FK++ND +GH +GD+++ +S + F Sbjct: 199 GRESTQSDARRNSVVQMYALAVIDIDHFKKVNDQYGHILGDEILLLVSRLISSCFRKSDP 258 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHK 230 V R GGEEF A S Q L +R +E P + +T+S G A Sbjct: 259 VYRYGGEEFLVVAGAESPQAMHTLFERVRSKVEGHYF-----PQVESVTVSVGYAIIDPA 313 Query: 231 EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 S I RAD+ALY AK+ GRN+V FSD+ Sbjct: 314 LSPSENIGRADRALYCAKEMGRNQVQSFSDL 344 >gi|255318419|ref|ZP_05359652.1| diguanylate cyclase [Acinetobacter radioresistens SK82] gi|262378649|ref|ZP_06071806.1| diguanylate cyclase [Acinetobacter radioresistens SH164] gi|255304411|gb|EET83595.1| diguanylate cyclase [Acinetobacter radioresistens SK82] gi|262299934|gb|EEY87846.1| diguanylate cyclase [Acinetobacter radioresistens SH164] Length = 452 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 7/156 (4%) Query: 107 DCLSGLLNH---SAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ LLN + I+ +++ K L+++ D D+FK IND FGH GD + FL+ Sbjct: 294 DSLTQLLNRRYLNTIINREINFSRKNGSPLTLLAIDADHFKGINDKFGHAAGDLALQFLA 353 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L+ + R+GGEEF + S A +A ++R IE + I + G S + T Sbjct: 354 EVLLECTKGSDYAFRIGGEEFLLLLVDSDLSRAQSVAENIRMRIEETVIRSTMGVSFNFT 413 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +S G + AD ALY AK +GRN V Sbjct: 414 VSVGAVLYDGHPDYQRFLDAADSALYAAKNNGRNNV 449 >gi|27377512|ref|NP_769041.1| hypothetical protein blr2401 [Bradyrhizobium japonicum USDA 110] gi|27350656|dbj|BAC47666.1| blr2401 [Bradyrhizobium japonicum USDA 110] Length = 634 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 17/181 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPV 150 R+ L+ D L+GL N F L +Y ++ L+++ D+D+FK ND +GHP Sbjct: 448 TRLETLATEDSLTGLANRRCFDDRLNDEWARAYRDRSSLALLMIDVDHFKAYNDEYGHPA 507 Query: 151 GDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + ++ L + R GGEEFA + A + +R+ I + + Sbjct: 508 GDACLRVVAKILAAEMHRAGDLAARYGGEEFAMLLPNTDAAGCARIGERIREAIHQAGLV 567 Query: 210 ISSGP-SIHITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +S P S +T+S G A ER ++++ AD+ALY AK GR+R++ ++ Sbjct: 568 HASSPISASVTVSLGGATCRPSFERTAGS--ASLVEAADRALYAAKDMGRDRLMMSGEVM 625 Query: 263 N 263 N Sbjct: 626 N 626 >gi|330828609|ref|YP_004391561.1| GGDEF domain-containing protein [Aeromonas veronii B565] gi|328803745|gb|AEB48944.1| GGDEF domain protein [Aeromonas veronii B565] Length = 473 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 29/163 (17%) Query: 107 DCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI---AFLSD 160 D L+GL N +++L N + + DID FK+IND +GHP+GD V+ A L Sbjct: 323 DALTGLYNRRYLEEALATLHKENSQYILAIIDIDNFKKINDTYGHPIGDAVLKRTAQLGS 382 Query: 161 QLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAAILANDLRKIIENSQINISSG--- 213 QL+ T + R GGEE F + S++Q ++E +I++ Sbjct: 383 QLLEEQAT---LCRFGGEELVAIFEQTDIASAQQ-----------LMEQWRISMGQQDWR 428 Query: 214 -PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ++ S GI E + P ++I RAD ALY AK++G+NR+ Sbjct: 429 EKGLSVSFSGGITESLNDAP-DSVIARADAALYQAKQAGKNRL 470 >gi|326938344|gb|AEA14240.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 567 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149 L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND GH Sbjct: 135 LRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGHM 194 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD +++ ++ +L V G + RLGG+EF + + + LA + + Sbjct: 195 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 252 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 253 MLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|225571421|ref|ZP_03780417.1| hypothetical protein CLOHYLEM_07519 [Clostridium hylemonae DSM 15053] gi|225159897|gb|EEG72516.1| hypothetical protein CLOHYLEM_07519 [Clostridium hylemonae DSM 15053] Length = 514 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 17/177 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQIND 144 S+LKE +++ S D L+GL N + S SY E++SI++ D+D+FK +ND Sbjct: 348 SLLKE------QLNNNSNTDFLTGLCNRRFFYEYFSETHSY-EQISILYVDLDHFKMVND 400 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH +GD+ + ++ L F + + R+GG+EF A +E + D+ +I+ Sbjct: 401 TYGHQIGDEALIMVAATLKKCFPDNL-IARIGGDEFLVARTEPVAEEELVRQADM--LID 457 Query: 205 NSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCF 258 Q ++ + + +SA I EP I +I +D ALY AK+SGR+R + Sbjct: 458 GLQDAFNTNSCMKV-LSASIGIAYTTEPAKKIDDLIKESDIALYKAKQSGRSRCCVY 513 >gi|117618369|ref|YP_855541.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559776|gb|ABK36724.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 384 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 13/210 (6%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL--FISYNRISQLSRIDCLSGLL 113 PF + ++ V L ++++ +L G+ ++ +E ++ +++ D L+GL Sbjct: 170 VPFPAVHWMAVGCL-IIMLETGRRMLNGWFELAVSREHENLTLARQLDAMAKRDPLTGLA 228 Query: 114 NHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N F + + + +I+ D+D+FK+ ND++GH GD + ++D L Sbjct: 229 NRRHFDNVGEQILQEARERHGEFAILLLDVDFFKRFNDHYGHLQGDNCLIAVADCLREAI 288 Query: 167 GTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGPSIHITISAGI 224 P V R GGEEF G+ + +A + + E ++ S S +T+S GI Sbjct: 289 RQPADVVARYGGEEFVLLLPGADALATSAIAKRIAAALAERGILHALSEVSDRVTVSQGI 348 Query: 225 A-ERCHKEPISTIIYRADQALYVAKKSGRN 253 A ++ I+ ++ RAD+ALY K++GRN Sbjct: 349 ALWHGGQDGIADMLVRADEALYQVKEAGRN 378 >gi|160875457|ref|YP_001554773.1| PAS/PAC sensor-containing diguanylate cyclase [Shewanella baltica OS195] gi|160860979|gb|ABX49513.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS195] gi|315267646|gb|ADT94499.1| diguanylate cyclase with PAS/PAC sensor [Shewanella baltica OS678] Length = 346 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 39/203 (19%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 + +++L+ D L+G+ N F I LG L +V DID FK +ND +GH Sbjct: 138 AQTELNRLALTDELTGIANRRHFFQQLEHEIKRLGRLQLPLCLVMMDIDNFKLVNDRYGH 197 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEA--------AILAN-D 198 VGDK++ + Q + P + GRLGGEEFA ++ A + LAN D Sbjct: 198 LVGDKILQHFT-QFISTRTRPYDIFGRLGGEEFALLLPETTVDTAQKIVMRMMSSLANED 256 Query: 199 LRKIIENSQINISSGPSI--------------------HITISAGIAERCHKEPISTIIY 238 + I+ + Q S+G S + + G +C + ++ Sbjct: 257 ISAIVADFQYQFSAGVSALTPVIIRHSIDNTTDIADVEQVELPVGTGSQCRSDA-EKLVA 315 Query: 239 RADQALYVAKKSGRNRVVCFSDI 261 AD+ALY AK GRNR V + ++ Sbjct: 316 EADKALYHAKTLGRNRAVIWDEV 338 >gi|66044125|ref|YP_233966.1| GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63254832|gb|AAY35928.1| GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 397 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 25/212 (11%) Query: 68 NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120 N L + ++ + L+ Y S + LF R+ Q+ +R D L+ L N Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250 Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL---VVVFGTPM 170 + S E ++I+ DID+FK NDN+GHP GD + L +L G Sbjct: 251 VMASVWEHARNAPANVAIILLDIDHFKSYNDNYGHPQGDTCLRLLCQKLQQSAHEHGAVA 310 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 F R GGEE +G Q + + E + G + +TIS G+A C Sbjct: 311 F--RFGGEEVLVLMIGDVVQAREVAGALQSAVAELKLPHPVLGENALVTISLGVA--CAT 366 Query: 231 EPIST---IIYRADQALYVAKKSGRNRVVCFS 259 P+++ +I AD ALY AK++GRN VCF+ Sbjct: 367 APLTSAENLIGAADNALYAAKRAGRN-CVCFA 397 >gi|39998439|ref|NP_954390.1| sensor histidine kinase/GGDEF domain protein [Geobacter sulfurreducens PCA] gi|39985386|gb|AAR36740.1| sensor histidine kinase/GGDEF domain protein [Geobacter sulfurreducens PCA] Length = 565 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F SL Y S+ DID+FKQ ND GH GD+V+ + Sbjct: 399 DPLTGLFNLRQFWLSLDHELKRARRYRRNCSLAMIDIDWFKQYNDCHGHLRGDEVLREAA 458 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHI 218 T R GGEEF ++ + A + A LR+ +E + + P + Sbjct: 459 AVFRGCIRTSDIAARYGGEEFVVIMPETTRELALLAAEKLRRAVEEHLFPLRETQPGGAL 518 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S GIA E ++ AD+ALY AK+ GRNRVV Sbjct: 519 TVSIGIATFPDDAEDGRELVEAADRALYRAKEGGRNRVV 557 >gi|312881804|ref|ZP_07741578.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122] gi|309370555|gb|EFP98033.1| diguanylate cyclase [Vibrio caribbenthicus ATCC BAA-2122] Length = 453 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 9/159 (5%) Query: 107 DCLSGLLNHSAFISS------LGSY-NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ NH F+ + + Y + L ++ DID+FK IND +GH GD + Sbjct: 289 DGLTGVYNHRHFVEAASHEYQVSRYLGKPLCLLMMDIDHFKTINDTYGHQTGDDALKHFV 348 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +GR+GGEEFA +S A A +R++I+ S + + I T Sbjct: 349 LLCSHKLRNSDLLGRIGGEEFALLMPDTSPLTAIEFAESIRELIKTSPLE-TKKAKITFT 407 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV-VC 257 +S G++ ++ +AD A+Y AK+ GR++V +C Sbjct: 408 VSIGVSAMLIDNDFECMLEQADLAMYRAKRLGRDQVQIC 446 >gi|308071261|ref|YP_003872866.1| hypothetical protein PPE_04568 [Paenibacillus polymyxa E681] gi|305860540|gb|ADM72328.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 363 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ S D L+ L N SL +E LS++ DID+FK++ND +GH G Sbjct: 192 RLEHTSYTDHLTNLSNRRQLEFSLEEKLPQARQRHEHLSVLVLDIDHFKEVNDTYGHAAG 251 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ L L+ V R GGEEF + ++A +AN + + + ++ Sbjct: 252 DAVLRQLGQILMEKCRPNDVVTRSGGEEFTVLLPNCAFRQALRIANQILSGVNQHEFILA 311 Query: 212 SGPSIHITISAGIAE-RCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259 + +T+S G+ E +S ++ +AD+ALY AK +GRNRV + Sbjct: 312 DDLVLKVTVSIGVTTFPGTGEDMSGAALLEQADKALYEAKNAGRNRVCSYE 362 >gi|242238029|ref|YP_002986210.1| diguanylate cyclase [Dickeya dadantii Ech703] gi|242130086|gb|ACS84388.1| diguanylate cyclase [Dickeya dadantii Ech703] Length = 378 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 12/191 (6%) Query: 78 ISLLLGYISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISS-----LGSYNEKLSI 131 ISL++ I GS+L L Y + ++R D L+ LL AF + + S E L + Sbjct: 177 ISLMIAII-GSLLSLLAKKYLIELPTIARYDDLTSLLRRDAFFQASNQALMLSRREDLPV 235 Query: 132 --VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 + DID+FKQ+ND GH GDK + +++ + +GRLGG+EFA + Sbjct: 236 CVMLIDIDHFKQVNDTQGHADGDKTLTVIANLIRDNSRRQDVLGRLGGDEFAIVLPDTPA 295 Query: 190 QEAAILANDLRK-IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 + A+ +A +R +IE + + P I ++I +A E + +I RAD LY+AK Sbjct: 296 ESASRVAERIRTALIELREESEWLSPHISVSIGLTVATDDETE-LDELIRRADTHLYMAK 354 Query: 249 KSGRNRVVCFS 259 ++ RN V S Sbjct: 355 RT-RNCTVSDS 364 >gi|256822607|ref|YP_003146570.1| diguanylate cyclase [Kangiella koreensis DSM 16069] gi|256796146|gb|ACV26802.1| diguanylate cyclase [Kangiella koreensis DSM 16069] Length = 486 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N AF+ +L + + ++ +DID FK+IND++GH GD+V+ L+ Sbjct: 325 DVLTGLPNRRAFMPALTKEHHRSVRLGHNYCVIIWDIDDFKRINDSYGHDFGDRVLVRLA 384 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + + R+GGEEFA + + R+ + + G +T Sbjct: 385 QIMRISCRDIDYYARIGGEEFAVLLPETDRESGEKAMERFRQEVADETFAAPDGTIHSVT 444 Query: 220 ISAGIAE---RCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS G+A R E S ++ AD+ALY +K G+N+ Sbjct: 445 ISIGLASLDARVVDE--SELLAEADKALYQSKAQGKNQT 481 >gi|330815199|ref|YP_004358904.1| Diguanylate cyclase [Burkholderia gladioli BSR3] gi|327367592|gb|AEA58948.1| Diguanylate cyclase [Burkholderia gladioli BSR3] Length = 364 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 19/184 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQIND 144 EL + + +LS+ D L+ L N + L G + + +LS++ D+D FKQ ND Sbjct: 184 ELLAANRELERLSQSDGLTALPNRRYLDAYLDGEWRKSQREQSELSMLMIDVDRFKQYND 243 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD V+ + L P R GGEEF G+ A ++A +R + Sbjct: 244 TYGHVAGDDVLRQVGAALQRCMSRPGDLAARFGGEEFGVVLPGTPAGGARLVAEKIR--L 301 Query: 204 ENSQINISSGPSIH---ITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVV 256 E + + + I +T+S G A C + +++I AD ALY AK+ GRNR V Sbjct: 302 EVAALQVPHAGGIEGGVVTVSIGGA--CVIASPEGSTTSLIETADAALYQAKRGGRNRAV 359 Query: 257 CFSD 260 +D Sbjct: 360 IAAD 363 >gi|317491881|ref|ZP_07950316.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920315|gb|EFV41639.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 388 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 15/169 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGH 148 +L I +++S + D L+ L N S F+S L S N E++ ++F D D FK +ND +GH Sbjct: 220 DLMIENDQLSYKALHDPLTSLPNRSNFMSMLESMNMMQEQICVMFLDGDGFKAVNDTWGH 279 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--- 205 GD V+ ++++L + G V R+GG+EF+ +Q +D+ ++IE Sbjct: 280 SAGDHVLTTIAERLKTLVGKNDLVARMGGDEFSILLRHVVDQ------DDVMQVIEKILK 333 Query: 206 ---SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 I + +G + +++S G + ++ +AD A+Y +K +G Sbjct: 334 AMRRTIYLPNGEEVFVSLSIGFTLSNAGSTPAELLEKADAAMYHSKHNG 382 >gi|307824141|ref|ZP_07654368.1| diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307734925|gb|EFO05775.1| diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 352 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 104/226 (46%), Gaps = 10/226 (4%) Query: 42 VIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRIS 101 V+ I +L Y+G + G E + S+++ + LL+GY++ + +++ +++RI Sbjct: 128 VLLIGACYL-YLGKSGVPGDEVFSLTQSSILLAWLFPMLLVGYVTTMLSSDIYHAFSRIK 186 Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ D L+ L N AF + S++ D D K +ND +GH G+ + Sbjct: 187 TTAQTDELTNLYNRRAFMDLFEKQLQQARRRESTFSLLLGDCDNLKIVNDKYGHEAGNLL 246 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++D R GG+EF ++ + A ++ ++ + S N G Sbjct: 247 LQAIADNFRHCLRGCDSAARYGGDEFTILLPNTNVEAAELVTKRIKDTLVASSFNY-RGN 305 Query: 215 SIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +I IS GIA H + ++ ADQA+Y K+ +N+V S Sbjct: 306 AITTNISVGIATYPEHGDTAEALLRHADQAMYANKRESKNQVTATS 351 >gi|172038490|ref|YP_001804991.1| hypothetical protein cce_3577 [Cyanothece sp. ATCC 51142] gi|171699944|gb|ACB52925.1| hypothetical protein cce_3577 [Cyanothece sp. ATCC 51142] Length = 290 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 20/237 (8%) Query: 32 SIFFSIFIATVIFIAN-----IFLFYIGLTPFYGLEYILVEN--LSLVIISITISLLLGY 84 SIF+ IA V + N IF F L + E +++N L L + T+ L Sbjct: 45 SIFYLFPIAVVTWYGNRKIGLIFSFLCSLCWLWA-EINMIDNSQLWLEPWNATVRLSFFI 103 Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 I +L EL +Y R +L+R D L+G +N F I L YN ++ +FD+D Sbjct: 104 IVTYLLSELKAAYEREKKLARTDSLTGAVNRRFFRELLREEIDRLARYNHPFTLAYFDVD 163 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK +ND GH GD ++ ++ + + + RLGG+EFA L Q+A ++ + Sbjct: 164 NFKMVNDQSGHSKGDYLLNKITTTIELNIRQTDILARLGGDEFALILLEIDYQKANLVLH 223 Query: 198 DLRKIIENSQINISSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRN 253 I+ + ++ + I+ S G I + + I D +Y K G+N Sbjct: 224 R----IQEQLLLMAEVEKMPISFSIGAITYYIIPQSVDHAIEEVDHLMYDIKHHGKN 276 >gi|218230897|ref|YP_002365424.1| sensory box/GGDEF family protein [Bacillus cereus B4264] gi|218158854|gb|ACK58846.1| sensory box/GGDEF family protein [Bacillus cereus B4264] Length = 567 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149 L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND GH Sbjct: 135 LRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHM 194 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD +++ ++ +L V G + RLGG+EF + + + LA + + Sbjct: 195 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 252 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 253 MLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|241204066|ref|YP_002975162.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857956|gb|ACS55623.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 709 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 100/203 (49%), Gaps = 32/203 (15%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAFI----- 119 LSL +I + LL+G L++L +Q +R D LSGLLN + Sbjct: 265 LSLFLIGV---LLVGASEARRLRQL-------AQTARFEASHDSLSGLLNRQGLLRLLED 314 Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 S + +L +V D+D FK +ND +GH VGD +I +S+ L+ + RLGG+ Sbjct: 315 LESPDPSSPRLYLV--DLDGFKAVNDAWGHAVGDDLIRIVSNALMTSHPEVLAAARLGGD 372 Query: 179 EFAAAALGSS---EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 EFA +GS+ E E AILA E +I+ G +I + S G A R Sbjct: 373 EFALVHVGSTAREEIEEAILA----LFAEPFKID---GRTIEVGASIGAAARDGDISPLE 425 Query: 236 IIYRADQALYVAKKSGRNRVVCF 258 ++ RAD ALY AK +G+ + V + Sbjct: 426 LLRRADMALYRAKANGKGQAVEY 448 >gi|70727144|ref|YP_254060.1| hypothetical protein SH2145 [Staphylococcus haemolyticus JCSC1435] gi|123659602|sp|Q4L4H1|Y2145_STAHJ RecName: Full=Uncharacterized membrane protein SH2145 gi|68447870|dbj|BAE05454.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 356 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 6/164 (3%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 Y+ ++ L + LNH + I+ NE L+++ DID FK +ND + H GD V+ Sbjct: 189 KYDYLTGLGNVKEFDRHLNHVSQIAE--DKNESLALLLIDIDGFKDVNDTYSHKSGDAVL 246 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S L + R GGEEF+ S ++ LA ++R +E S ++ + Sbjct: 247 KQMSQLLKNYVPKQFQIFRNGGEEFSVVIRNYSLDQSVKLAENIRTGVEKSSFHLPNKEV 306 Query: 216 IHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I +++S G+ ++ HK + AD ++VAK GRN+V+ Sbjct: 307 IKLSVSIGVGYLSQDDHKSQ-RKVFKDADDMVHVAKNEGRNQVM 349 >gi|319777826|ref|YP_004134256.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171545|gb|ADV15082.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 417 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 12/176 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLS---IVFFDIDYFKQIND 144 EL + +R+ L+R D L+G+ N +L GS L+ ++ DID FK++ND Sbjct: 224 ELAKANDRLVLLARTDPLTGISNRRWMTETLERLWGSDKRCLAGAAMLMCDIDNFKKLND 283 Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 + GH GD+ + ++ L V V R GGEEF G +E+EAA +A +RK + Sbjct: 284 HLGHAEGDRCLVRVATILKENVRRDRDHVARYGGEEFLVLLPGVNEEEAAAVAERMRKSV 343 Query: 204 ENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 E + + N S S +T+S G+A + E IS + RAD ALY+AK++GRNRV+ Sbjct: 344 EAAALPNPGSRVSRWVTLSIGVAVQT-SEAISPEQLQQRADAALYLAKQTGRNRVL 398 >gi|313672987|ref|YP_004051098.1| response regulator receiver modulated diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672] gi|312939743|gb|ADR18935.1| response regulator receiver modulated diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672] Length = 304 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 26/194 (13%) Query: 85 ISGSILK-------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--------- 128 I G+ILK EL + + L+ ID L+G+ N L Y EK Sbjct: 111 IIGAILKARVATHIELKKQRDYLENLTMIDGLTGIANKR----RLNEYLEKWYKISLRKK 166 Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAAL 185 LSI DIDYFK ND +GH GD + F++ + P V R GGEEFA Sbjct: 167 LNLSIFMIDIDYFKLYNDTYGHLAGDDCLKFIAGAIKNSLKRPYDLVARFGGEEFACVIP 226 Query: 186 GSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRADQ 242 +S +A ++A ++ I N ++ + +S S ++T+S G E ++ RAD+ Sbjct: 227 ETSYDDALMIAGRIKSNISNLRLEHKASTISSYVTVSIGGISGIPTELDGHFKMLERADE 286 Query: 243 ALYVAKKSGRNRVV 256 +LY AK+ GR+++V Sbjct: 287 SLYKAKQLGRDQIV 300 >gi|257091854|ref|YP_003165495.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044378|gb|ACV33566.1| diguanylate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 597 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL +R S L R D L+G LN + G + L + DID FK++ND Sbjct: 425 ELQAELDRASTLVRHDQLTGALNRRGLEEAFGKETARSRRRQSCLCVALLDIDNFKKLND 484 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH GD + L+ + + R GGEEF +S ++A L++ + Sbjct: 485 SLGHDAGDAALIHLATVIRETMRPQDTIARYGGEEFIILLPDTSIEDAQTAIVRLQREL- 543 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I + + IT SAG+ + ++ ++ RAD+A+Y AK++G+NRV+ Sbjct: 544 TRRIFLHNNDRQLITFSAGVTDFRAEDTQLSVTKRADEAMYAAKQAGKNRVL 595 >gi|253701669|ref|YP_003022858.1| diguanylate cyclase [Geobacter sp. M21] gi|251776519|gb|ACT19100.1| diguanylate cyclase [Geobacter sp. M21] Length = 356 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + R L+ D L+GL NH F + Y++ SI+ D+D FK ND+FGH Sbjct: 178 HKRTKLLAITDSLTGLHNHRYFKQYFRQEMGRAKRYHKPFSIIMMDVDDFKSYNDSFGHA 237 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+++AF+ + ++ R GGEEF + +A + A LR+ ++ N Sbjct: 238 TGDRLLAFMGEIILQTIRGVDVAFRYGGEEFIVLLPETKLDKAILAAERLRESVQAGTAN 297 Query: 210 IS-SGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255 G +T+S G+A + + + + D LY+AK+ G+N+V Sbjct: 298 RPVDGSGRGVTVSIGVASYPDNADKMDELFNIVDSLLYLAKRCGKNKV 345 >gi|148981346|ref|ZP_01816374.1| putative regulatory components of sensory transduction system [Vibrionales bacterium SWAT-3] gi|145960904|gb|EDK26233.1| putative regulatory components of sensory transduction system [Vibrionales bacterium SWAT-3] Length = 337 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 23/171 (13%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+ L N + L G N ++++ D+D+FK NDN+GH GD Sbjct: 161 LQQQANEDGLTKLYNRRYMDTKLEESIAWHGRRNISMTVILLDVDFFKPYNDNYGHIQGD 220 Query: 153 KVIAFLSDQLVVVF-GTPMFVGRLGGEEF----AAAALGSSEQEAAILAN---DLRKIIE 204 K + L++ L V+F FVGR GGEEF + ++EQ+A + D+ E Sbjct: 221 KCLQGLANTLKVLFVRAGEFVGRYGGEEFVLILSDTDSDAAEQQAIRIKEALYDMNYAHE 280 Query: 205 NSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRN 253 S I S +T S G+ E +++I + DQALY AK+SGRN Sbjct: 281 YSAI------SDRVTASQGVLSFVPNGDESLASIYEKVDQALYQAKQSGRN 325 >gi|167035659|ref|YP_001670890.1| diguanylate cyclase [Pseudomonas putida GB-1] gi|166862147|gb|ABZ00555.1| diguanylate cyclase [Pseudomonas putida GB-1] Length = 423 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 16/158 (10%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + F + + + L+++F D D+FKQIND GH VGD+V+ ++ Sbjct: 251 DSLTGLPNRAFFEGRLSRSVRNAARQQDHLALLFLDSDHFKQINDTLGHAVGDEVLISVA 310 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ--INISSGPSI 216 D++ V RLGG+EFA S ++A +A KI+ + + + + SG SI Sbjct: 311 DRVRAQLREHDLVARLGGDEFAVLLTPLQSRKDAEHIAE---KIVASMKLPVQLDSGRSI 367 Query: 217 HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGR 252 ++S GIA +P S ++ AD A+Y AK+ R Sbjct: 368 ATSLSVGIAYYPDDGADPAS-LLNAADAAMYQAKRKRR 404 >gi|148251791|ref|YP_001236376.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] gi|146403964|gb|ABQ32470.1| diguanylate cyclase [Bradyrhizobium sp. BTAi1] Length = 565 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 14/183 (7%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYF 139 G +EL + +R++ ++ ID LSGL N F + + +LS++ D+D+F Sbjct: 368 GQRERELIAANDRLTVMASIDMLSGLANRRGFQNHIDVEWARALQTGAELSLLMIDVDHF 427 Query: 140 KQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 K ND +GHP GD ++ L + L + T F GR GGEEF G ++A + Sbjct: 428 KLYNDTYGHPEGDACLSRLGETLAQIAQATDAFAGRYGGEEFCLLIPGIDARQAFEIGEQ 487 Query: 199 LRKIIENSQINISSGPSIH--ITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNR 254 +R + ++N+ S + +T+S G+A + ++T +I AD ALY AK GRN Sbjct: 488 IRYAV--LELNLPHATSAYRCVTVSVGVASARPNDALATTDLIEAADAALYAAKHHGRNT 545 Query: 255 VVC 257 V+ Sbjct: 546 VIA 548 >gi|258591906|emb|CBE68211.1| response regulator PleD (with diguanylate cyclase and response regulator receiver domains) (fragment) [NC10 bacterium 'Dutch sediment'] Length = 128 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 64/124 (51%), Gaps = 1/124 (0%) Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 D+D FK+IND +GH GD V+A S L + + + R GGEEF + A Sbjct: 1 MIDVDRFKEINDRYGHVAGDAVLASTSQCLQLQVRSYDRLYRYGGEEFLLCMPNTGIDAA 60 Query: 193 AILANDLRKIIENSQINI-SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 +A LR + QI S P + IT S GIA + P+ I R D+A+Y AK +G Sbjct: 61 LEIAERLRIAVAAQQIRSGDSDPHLQITASFGIAALDGERPVEESIDRVDKAMYQAKTAG 120 Query: 252 RNRV 255 RNRV Sbjct: 121 RNRV 124 >gi|253575747|ref|ZP_04853082.1| diguanylate cyclase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844790|gb|EES72803.1| diguanylate cyclase [Paenibacillus sp. oral taxon 786 str. D14] Length = 664 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 13/165 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDK 153 + + +++ D L+GL ++ + +K S++ DID FKQ+ND +GH GDK Sbjct: 496 HAEVRRMANRDMLTGLYARHYVDDAIQEFQKKDTNGSLIIVDIDQFKQVNDTYGHQTGDK 555 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ + + R GGEE A G+S A + +I E ++ ++ Sbjct: 556 ILKQVCAIVKSSIRKTDIAARWGGEELAVYLPGAS-------AENSYQIAETIRLRVAMD 608 Query: 214 PSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S GIAE K + ++ Y AD ALY AK +GRN+ Sbjct: 609 TDPPVTVSCGIAEWVKGDEKLSVESLFYEADMALYKAKNNGRNQT 653 >gi|223983506|ref|ZP_03633691.1| hypothetical protein HOLDEFILI_00972 [Holdemania filiformis DSM 12042] gi|223964501|gb|EEF68828.1| hypothetical protein HOLDEFILI_00972 [Holdemania filiformis DSM 12042] Length = 683 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 22/176 (12%) Query: 95 ISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 + +++ QL++ID L+GL N + +++ ++ +++ FDID+FK ND FG Sbjct: 505 VELDQLKQLAKIDSLTGLFNRAYAKRALDTILNNEADASQNYALLVFDIDFFKSANDEFG 564 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS- 206 H GD+V+A ++ ++ R+GG+EF + L ++IE Sbjct: 565 HLFGDQVLANVAHRIQANVRKSDISARIGGDEFLIFME---------YKDHLEQMIERIF 615 Query: 207 QINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259 Q S IT+S G+A C + T+ + ADQALY AK+ GR + C+ Sbjct: 616 QALNGSFQGYDITVSMGVA--CFPQDGLDYMTLFHHADQALYAAKRRGRRQYCCYE 669 >gi|182420193|ref|ZP_02951424.1| diguanylate cyclase [Clostridium butyricum 5521] gi|182375996|gb|EDT73586.1| diguanylate cyclase [Clostridium butyricum 5521] Length = 633 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 14/170 (8%) Query: 94 FISYNRISQLSRIDCLSGLLN--HSAFISSLGSY----NEKLSIVFFDIDYFKQINDNFG 147 ISY +I +L + GL + + + L + + SI+ DID FK +ND +G Sbjct: 468 LISYTKIKKLRAQNQKDGLTKSYNRFYFNELYEHFIREDTNFSIMMIDIDNFKSLNDTYG 527 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V+ + + + + + R GGEEF + S QE ++ +R +E Sbjct: 528 HQFGDTVLINVCNTISKIIDKDSKLCRYGGEEFVVVSSNKSRQELEEISEKIRVEVE--- 584 Query: 208 INISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVV 256 I ++ +T+S G+A C +KE + AD+ LY AK +G+N+VV Sbjct: 585 -KIEFQENVKVTLSIGVAMSCDNKEDTLNV---ADKNLYTAKTTGKNKVV 630 >gi|330446056|ref|ZP_08309708.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490247|dbj|GAA04205.1| diguanylate cyclase domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 438 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 67/130 (51%), Gaps = 13/130 (10%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAAL 185 S+VF DID+FKQ+ND GH GD V+ + + R GGEEF A L Sbjct: 309 SMVFIDIDHFKQVNDLHGHRYGDNVLRRFASLINKRVRKSDVFARWGGEEFVIFCPATPL 368 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALY 245 G+ AA A +R IE ++ + + IT S G+AE E + I RAD+AL Sbjct: 369 GA----AAEFAESIRDCIEQAEWD----HDMKITCSMGVAE-LENEEYNHFIERADKALL 419 Query: 246 VAKKSGRNRV 255 AK+ GRNRV Sbjct: 420 KAKERGRNRV 429 >gi|295095124|emb|CBK84214.1| diguanylate cyclase (GGDEF) domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 513 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+G N AF + L + ++ + DID FK IND +GH GD V+ ++ + + Sbjct: 359 DALTGCKNRRAFDNDVDELLTAHQPFVLALIDIDNFKSINDTWGHLSGDIVLRNVAREGI 418 Query: 164 VVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + P V R GGEEF A L R +E + + +T S Sbjct: 419 QIM-QPHHVSVYRYGGEEFGVIFPAELMNSAHALLEAWRTAVEKRTWREEN---LRVTFS 474 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 AG+ E H EP+ I D+ALY AK+ G+NR+V Sbjct: 475 AGMGE-WHFEPLEQFIGSVDEALYTAKQQGKNRIVS 509 >gi|291538351|emb|CBL11462.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis XB6B4] Length = 1046 Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 33/191 (17%) Query: 86 SGSILKELFISYN---------RISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIV 132 +G ILK + SY+ ++S+ R D L+ L N A L Y E ++ Sbjct: 238 NGKILKIIGRSYDISSDRKIQEQLSEEMRRDPLTHLYNKVATGEEAERILKEYPEGTHVL 297 Query: 133 FF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA----AALGS 187 F DID FK IND FGH VGD VI+ ++ L F VGR+GG+EF L Sbjct: 298 FLIDIDNFKSINDTFGHTVGDTVISDIASALEEQFPDHKLVGRVGGDEFLVLMDNTTLKQ 357 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQ 242 +EQ+A L K + + IH+T+S G+A C+ E + +AD+ Sbjct: 358 AEQKAKELCRHGEKKL------VGDDAVIHVTMSVGLAVSGQDGNCYTE----LFDQADR 407 Query: 243 ALYVAKKSGRN 253 A+Y K+SG++ Sbjct: 408 AMYAIKRSGKS 418 Score = 36.6 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L D L+GL N AF L + E ++V DID F +N+N+G GD Sbjct: 620 IRHLQDRDQLTGLYNLEAFKYRLKNILAEAKQGQEHYALVHIDIDKFSYVNENYGQQTGD 679 Query: 153 KVI 155 ++ Sbjct: 680 AIL 682 >gi|291535855|emb|CBL08967.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis M50/1] Length = 1046 Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 33/191 (17%) Query: 86 SGSILKELFISYN---------RISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIV 132 +G ILK + SY+ ++S+ R D L+ L N A L Y E ++ Sbjct: 238 NGKILKIIGRSYDISSDRKIQEQLSEEMRRDPLTHLYNKVATGEEAERILKEYPEGTHVL 297 Query: 133 FF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA----AALGS 187 F DID FK IND FGH VGD VI+ ++ L F VGR+GG+EF L Sbjct: 298 FLIDIDNFKSINDTFGHTVGDTVISDIASALEEQFPDHKLVGRVGGDEFLVLMDNTTLKQ 357 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQ 242 +EQ+A L K + + IH+T+S G+A C+ E + +AD+ Sbjct: 358 AEQKAKELCRHGEKKL------VGDDAVIHVTMSVGLAVSGQDGNCYTE----LFDQADR 407 Query: 243 ALYVAKKSGRN 253 A+Y K+SG++ Sbjct: 408 AMYAIKRSGKS 418 Score = 36.6 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L D L+GL N AF L + E ++V DID F +N+N+G GD Sbjct: 620 IRHLQDRDQLTGLYNLEAFKYRLKNILAEAKQGQEHYALVHIDIDKFSYVNENYGQQTGD 679 Query: 153 KVI 155 ++ Sbjct: 680 AIL 682 >gi|260778484|ref|ZP_05887376.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260604648|gb|EEX30943.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 361 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 14/138 (10%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 K S+ DID FK++ND +GH +GD V+ + QL F+ R GGEEF Sbjct: 213 KGSLAVIDIDNFKRVNDVYGHQIGDDVLKKTAQQLQACLSERDFIARFGGEEFVVWLPER 272 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE---------RCHKEPISTIIY 238 +E E L +L + ++I + P +T+S G+ E K + II Sbjct: 273 TELERRQLIEELHQ--SANEILLDGEP---VTVSIGVCEFDFGNESEIDNKKGALDQIIL 327 Query: 239 RADQALYVAKKSGRNRVV 256 AD+ALY AK GRNRVV Sbjct: 328 VADEALYQAKNQGRNRVV 345 >gi|229522898|ref|ZP_04412312.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae TM 11079-80] gi|229340115|gb|EEO05123.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae TM 11079-80] Length = 359 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 19/164 (11%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G LN L NE I DID+FK +ND +GH GDKVI Sbjct: 178 LSTRDALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVI 237 Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 Q+V + T + RLGG+EF +S +A ++ + + I+ + Sbjct: 238 T----QVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYH 293 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+AE + R DQALY +KK G+NRV Sbjct: 294 AK----VTVSVGLAEALRTDDPEQWFKRTDQALYHSKKMGKNRV 333 >gi|240145958|ref|ZP_04744559.1| putative cyclic diguanylate phosphodiesterase domain protein [Roseburia intestinalis L1-82] gi|257201945|gb|EEV00230.1| putative cyclic diguanylate phosphodiesterase domain protein [Roseburia intestinalis L1-82] Length = 1046 Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 33/191 (17%) Query: 86 SGSILKELFISYN---------RISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIV 132 +G ILK + SY+ ++S+ R D L+ L N A L Y E ++ Sbjct: 238 NGKILKIIGRSYDISSDRKIQEQLSEEMRRDPLTHLYNKVATGEEAERILKEYPEGTHVL 297 Query: 133 FF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA----AALGS 187 F DID FK IND FGH VGD VI+ ++ L F VGR+GG+EF L Sbjct: 298 FLIDIDNFKSINDTFGHTVGDTVISDIASALEEQFPDHKLVGRVGGDEFLVLMDNTTLKQ 357 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQ 242 +EQ+A L K + + IH+T+S G+A C+ E + +AD+ Sbjct: 358 AEQKAKELCRHGEKKL------VGDDAVIHVTMSVGLAVSGQDGNCYTE----LFDQADR 407 Query: 243 ALYVAKKSGRN 253 A+Y K+SG++ Sbjct: 408 AMYAIKRSGKS 418 Score = 36.6 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L D L+GL N AF L + E ++V DID F +N+N+G GD Sbjct: 620 IRHLQDRDQLTGLYNLEAFKYRLKNILAEAKQGQEHYALVHIDIDKFSYVNENYGQQTGD 679 Query: 153 KVI 155 ++ Sbjct: 680 AIL 682 >gi|224824140|ref|ZP_03697248.1| diguanylate cyclase [Lutiella nitroferrum 2002] gi|224603559|gb|EEG09734.1| diguanylate cyclase [Lutiella nitroferrum 2002] Length = 574 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 26/182 (14%) Query: 91 KELFISYNRISQ-------LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDI 136 KEL ++SQ L+ D L+GL N F I ++ ++L+++F D+ Sbjct: 389 KELKSHMEKMSQNQQELRHLAHHDSLTGLPNRMQFFHQIECAIDAVAESGQQLAVLFIDL 448 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEAAI 194 D+FKQIND GH VGD+V+ ++ +L V RLGG+EF G + + AI Sbjct: 449 DHFKQINDQMGHAVGDQVLIVVAQRLRSALRGEDVVARLGGDEFIVLIKGPAIAAEVPAI 508 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKS 250 A L + E+ ++ G + + S GI+ + E ++ RAD A+Y AK S Sbjct: 509 AAKILSTLNEDI---MTHGHRLQVCASIGISLFPDDGVTAE---ELVLRADSAMYKAKVS 562 Query: 251 GR 252 GR Sbjct: 563 GR 564 >gi|119472717|ref|ZP_01614682.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Alteromonadales bacterium TW-7] gi|119444793|gb|EAW26096.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Alteromonadales bacterium TW-7] Length = 462 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 12/166 (7%) Query: 101 SQLSRI---DCLSGLLNHSAFISSL-----GSYNEKLSIVF--FDIDYFKQINDNFGHPV 150 SQL +I D L+G+ N F + GS I F FD+D FK +ND +GH V Sbjct: 290 SQLEKIAFFDPLTGIPNRRFFSDQVNKLVKGSVRRGGIIAFGLFDVDNFKAVNDTYGHDV 349 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ L++ L + R GGEEFA A + +A +A L I + ++ + Sbjct: 350 GDRVLVELANILTHILRIDDVFCRFGGEEFAFAVILKEVDDAEPVAEKLINAIRDLKVPV 409 Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +I++T+S G + + I I +D A+Y KKSG++R Sbjct: 410 EGENTINVTVSMGLNVVSPSNSTDIDDHIKISDSAMYQVKKSGKDR 455 >gi|78046954|ref|YP_363129.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035384|emb|CAJ23029.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 569 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL LS++ D+D+FKQ ND+ GH GD ++A + Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L+ R GGEEF + +EA +A +R I ++ + +T Sbjct: 462 ELLLTRLRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRSYIAALAVSDGARALPKVT 521 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E +++I +AD ALY AK +GRNRV Sbjct: 522 ASIGVASFPADGEQGASLIQKADAALYRAKHAGRNRV 558 >gi|228937866|ref|ZP_04100494.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970747|ref|ZP_04131387.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977322|ref|ZP_04137717.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407] gi|228782299|gb|EEM30482.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407] gi|228788872|gb|EEM36811.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821772|gb|EEM67772.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 569 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149 L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND GH Sbjct: 137 LRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGHM 196 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD +++ ++ +L V G + RLGG+EF + + + LA + + Sbjct: 197 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 254 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 255 MLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|152965576|ref|YP_001361360.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] gi|151360093|gb|ABS03096.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] Length = 509 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 9/158 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 + + + +D L+G+ N L + E L++ D+D+FK +ND FGH GD+V+ + Sbjct: 343 LRRAATLDGLTGVANRRTLDEVLARVDGEALAVALLDVDHFKAVNDRFGHQTGDEVLRAV 402 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + V V R GGEEFA G+ EA + ++E + ++ G + + Sbjct: 403 AAAAVSAVREGDLVARYGGEEFAVLMPGTGTAEAQV-------VVERLRAAVAGGTTPRV 455 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T S GIA + + ++ AD+ALY AK +GR+R V Sbjct: 456 TCSVGIAGGAAGD-PAALLAEADRALYAAKAAGRDRSV 492 >gi|149909554|ref|ZP_01898208.1| methyl-accepting chemotaxis protein-like protein [Moritella sp. PE36] gi|149807459|gb|EDM67410.1| methyl-accepting chemotaxis protein-like protein [Moritella sp. PE36] Length = 365 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 26/204 (12%) Query: 72 VIISITISLLLGYISGSILKELFISY--NRISQLSRIDCLS-------------GLLNHS 116 ++S + LLLG++ + I+Y +++S+LS D L+ LLNH+ Sbjct: 170 AVLSTSGVLLLGFLIFIFTIIVIINYFVHQLSELSIRDSLTNLYTKRFLKEISPALLNHN 229 Query: 117 AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 + L+ +F D+D+FK IND GH GDKV+ ++ + + R G Sbjct: 230 KLT------DHHLTAIFIDLDHFKSINDLHGHDNGDKVLKKVAKIMRENAKQRHYCMRYG 283 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAERCH--KEPI 233 GEEF +E A +A +R + S++ I+ +T+SAG+A + + Sbjct: 284 GEEFVLIGFFENEMSAVDMAETIRHQV--SEVCFINDNNEFSVTLSAGVALHNNLIDDSF 341 Query: 234 STIIYRADQALYVAKKSGRNRVVC 257 + + RAD LY AK +GRNRVV Sbjct: 342 ANTVKRADMKLYEAKTAGRNRVVV 365 >gi|189425690|ref|YP_001952867.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ] gi|189421949|gb|ACD96347.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ] Length = 768 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 16/237 (6%) Query: 30 YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSI 89 Y + + V + L Y +T +++L + + + ++ L G I Sbjct: 375 YRDQLWEAWQQAVRDRQPVRLEYRIMTADNKEKWVLEQGVPVFDTEGSVQALEGIIVD-- 432 Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 + EL +I L+ D L+ L N + F + S + KL++ F D+D FK I Sbjct: 433 ISELKQIEAQIQHLASYDNLTSLPNRALFSDRIDRALLSAQRNSSKLALFFIDLDQFKPI 492 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRK 201 ND GH GD ++ + ++ V R+GG+EFA ++ Q+A +A +R Sbjct: 493 NDELGHDTGDWLLQAAAQRMAESVRESDTVARIGGDEFAVLLQNIATAQDARTVAEKIRT 552 Query: 202 IIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + N SG ++HI+ S G+A E + ++ AD+A+Y AKK GRN V Sbjct: 553 TL-NRPFITPSGVTLHISCSIGVALYPEDGDNQ--RDLLRAADEAMYRAKKRGRNAV 606 >gi|118590336|ref|ZP_01547739.1| putative sensory box/GGDEF family protein [Stappia aggregata IAM 12614] gi|118437308|gb|EAV43946.1| putative sensory box/GGDEF family protein [Stappia aggregata IAM 12614] Length = 773 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 30/191 (15%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDID 137 S+ E + +I L+ D L+GL N F + L EK+S +VF D+D Sbjct: 322 SVAVERDRAERKIRYLANHDVLTGLPNRQEFKTKL---EEKVSESDRTGAPVAVVFVDLD 378 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--- 194 FK +ND+FGH +GD+V+ ++++++ V R GG+EF G + Q++A+ Sbjct: 379 NFKFVNDSFGHGIGDQVLMIVAERIMSVHNGAHQAIRFGGDEFVLIVDGETAQKSALNEF 438 Query: 195 ---LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAK 248 L N++ K I+ + S H+T S G A C+ + + ++ AD+A++ AK Sbjct: 439 MARLRNEITKTIQIDDL------SFHVTCSIGAA--CYPQDADSAAQLLRNADKAMFDAK 490 Query: 249 KSGRNRVVCFS 259 +GR+ F Sbjct: 491 SAGRDSYKVFE 501 >gi|75907253|ref|YP_321549.1| response regulator receiver modulated diguanylate cyclase [Anabaena variabilis ATCC 29413] gi|75700978|gb|ABA20654.1| response regulator receiver modulated diguanylate cyclase [Anabaena variabilis ATCC 29413] Length = 330 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 12/182 (6%) Query: 85 ISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDI 136 I S L++ + NR + +L ID L+ + N F ++ LS++ D+ Sbjct: 127 IQQSHLQQKLEAANRELQRLVTIDELTQVANRRRFEEYCAQEWQRMARDQLPLSLILCDV 186 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAIL 195 D+FK ND +GH GD+ + ++ + P V R GGEEFA + + A L Sbjct: 187 DFFKAYNDTYGHRAGDRCLQLVAKAIENCVNRPADVVARYGGEEFAVILPRTYPEGAIHL 246 Query: 196 ANDLRKIIENSQI-NISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGR 252 AN + + QI +++S + +TISAG+A II AD+ALY AK +GR Sbjct: 247 ANAICSAVRELQIPHLTSQANTCVTISAGVATEIPVPNSDFQEIIDAADRALYQAKMAGR 306 Query: 253 NR 254 +R Sbjct: 307 DR 308 >gi|296445025|ref|ZP_06886986.1| diguanylate cyclase [Methylosinus trichosporium OB3b] gi|296257446|gb|EFH04512.1| diguanylate cyclase [Methylosinus trichosporium OB3b] Length = 397 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 21/179 (11%) Query: 101 SQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 + L+R D L+GL N +++LG+ + L+I D+D FK +ND GH VGD Sbjct: 222 AALARRDALTGLANRVHLRERFEDSVAALGAEDGALAIHCLDLDRFKAVNDLHGHLVGDA 281 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI------IENS 206 ++ +++LV + RLGG+EF G E EA +LA+ + ++ I+ Sbjct: 282 LLRMATERLVGTLRSEDTAARLGGDEFVIVQTGIRHEDEARLLAHRIIRVLSAPYEIDGR 341 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 +I I + + + G+A + + RAD ALY AK+ R V D ++ Sbjct: 342 EIRIGASIGVALAPRDGLA-------LEILCERADAALYRAKRDNRGGVALCGDAPPSS 393 >gi|228919483|ref|ZP_04082847.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840126|gb|EEM85403.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 569 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149 L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND GH Sbjct: 137 LRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGHM 196 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD +++ ++ +L V G + RLGG+EF + + + LA + + Sbjct: 197 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 254 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 255 MLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|228957047|ref|ZP_04118822.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str. T13001] gi|229042486|ref|ZP_04190231.1| Sensory box/GGDEF [Bacillus cereus AH676] gi|229108234|ref|ZP_04237856.1| Sensory box/GGDEF [Bacillus cereus Rock1-15] gi|229126059|ref|ZP_04255081.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4] gi|229143352|ref|ZP_04271783.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24] gi|229148966|ref|ZP_04277211.1| Sensory box/GGDEF [Bacillus cereus m1550] gi|228634506|gb|EEK91090.1| Sensory box/GGDEF [Bacillus cereus m1550] gi|228640159|gb|EEK96558.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24] gi|228657381|gb|EEL13197.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4] gi|228675250|gb|EEL30472.1| Sensory box/GGDEF [Bacillus cereus Rock1-15] gi|228726839|gb|EEL78051.1| Sensory box/GGDEF [Bacillus cereus AH676] gi|228802678|gb|EEM49520.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str. T13001] Length = 569 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 6/172 (3%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149 L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND GH Sbjct: 137 LRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHM 196 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD +++ ++ +L V G + RLGG+EF + + + LA + + Sbjct: 197 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 254 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 255 MLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|146313336|ref|YP_001178410.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638] gi|145320212|gb|ABP62359.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638] Length = 692 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 15/197 (7%) Query: 69 LSLVIISITISLLLGYISG--SILKELFISYNR-ISQLSRIDCLSGLLNH-------SAF 118 LS++ I++ +S+L + ++L NR ++QL+ D L+ L N S Sbjct: 223 LSILAITLLVSMLDARLQARTTLLASSLAEANRELAQLALHDTLTRLPNRILLEDRLSQA 282 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 I+ +++F D+D FK +ND +GH GDK++ ++ +L++ + R+GG+ Sbjct: 283 INKADREGTHFALMFMDLDGFKAVNDAYGHVTGDKLLVAVTKRLLLPLKGQYTLARIGGD 342 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHK-EPISTI 236 EF S +AA LAN L + I++ S P + +T+S GIA H + + Sbjct: 343 EFVLLVEVSGPDDAASLANALVRAIDSP---FSVDPYELVVTVSIGIALYPHDGKTDREM 399 Query: 237 IYRADQALYVAKKSGRN 253 ++ AD A+Y K GRN Sbjct: 400 MFNADAAMYHTKHVGRN 416 >gi|104782021|ref|YP_608519.1| diguanylate cyclase/phosphodiesterase [Pseudomonas entomophila L48] gi|95111008|emb|CAK15728.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Pseudomonas entomophila L48] Length = 744 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 9/168 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFG 147 +EL ++ +L+ D ++GL N F L + L+++ DID FKQ+ND+ G Sbjct: 305 RELRQYQAQLERLAHYDTITGLPNRVLFQQQLTEAILRDHGLAVLMLDIDGFKQVNDSLG 364 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 HP+GD ++ + + + + V RLGG+EF G+ Q + + +R ++ Q Sbjct: 365 HPMGDLLLQQATARFLQELHSQDRVCRLGGDEFVFMLQGAQGQ----VQHQIRALLRCLQ 420 Query: 208 INIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 +G + +T S G+A H E +++ AD A+Y AK+SGRN Sbjct: 421 RPFDLNGNATLVTGSIGLAWSPQHGEDADSLLRHADTAMYAAKESGRN 468 >gi|90020710|ref|YP_526537.1| hypothetical protein Sde_1063 [Saccharophagus degradans 2-40] gi|89950310|gb|ABD80325.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 451 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 97/218 (44%), Gaps = 28/218 (12%) Query: 62 EYILVENLSLVIISITISLLLGYISGSI-------------LKELFISYNR-------IS 101 E++ E++ L +I I +++L+ I L EL +Y + I Sbjct: 217 EWVSAESMYLTLILIWMTILIWEGLSRIYWLQQKAKKEERRLSELLNNYQQLESEKREIE 276 Query: 102 QLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+ LN S + S ++++ DID+FK IND FGH VGD + Sbjct: 277 NLSNRDTLTQALNRSGLSQKVETIFNSESPAPQVAVFVIDIDFFKSINDTFGHDVGDTTL 336 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + + + +GR GGEEF + + A +AN LRK I + N Sbjct: 337 QKVVNIIQTNMRSEDILGRWGGEEFVLITRVTDLKTALHVANKLRKCI--AVHNFEFPDD 394 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +TIS G+ + + RAD ALY AK +GRN Sbjct: 395 RQLTISMGLTMSEIGDRFEDVFKRADVALYKAKHTGRN 432 >gi|89092313|ref|ZP_01165267.1| sensory box protein [Oceanospirillum sp. MED92] gi|89083401|gb|EAR62619.1| sensory box protein [Oceanospirillum sp. MED92] Length = 677 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 18/191 (9%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------SYNEK 128 +I++ L IS EL N + Q++ D L+GL N AF+ SL S N++ Sbjct: 214 TISVDQLQQEISKRT-SELEQQKNSLRQIAEHDSLTGLANREAFLKSLNEVIIHCSTNKR 272 Query: 129 LSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AAL 185 + VFF D+D FKQIND+ GH GD V+ ++ + + R+GG+EF L Sbjct: 273 RAAVFFIDLDKFKQINDSMGHSAGDAVLIEMAHRFTSTLRKSDSLARIGGDEFTVIIDPL 332 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQ 242 S ++AA LA L +E + ++++ S GIA + E +T ++ AD Sbjct: 333 YES-KDAAELAKKLIASLE--EPYEYEDQTLYLNTSIGIA--VYPEDGTTPQELMKNADS 387 Query: 243 ALYVAKKSGRN 253 A+Y AKK+G N Sbjct: 388 AMYQAKKAGGN 398 >gi|322805533|emb|CBZ03098.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Clostridium botulinum H04402 065] Length = 419 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 15/180 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 E I ++ Q++ D L+ L N ++F+ L L+I+F D+D FK++ND Sbjct: 244 ERKIYNDKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSKKKQSLLAIMFLDLDKFKEVND 303 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203 NFGH GDK++ ++ ++ + + R GG+EF + E++ LA D+ ++ Sbjct: 304 NFGHCTGDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRNIAYEKQVEDLAMDIIEVF 363 Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + I I G ++I S GI+ + H +I +AD+A+Y AKK G N+ + D Sbjct: 364 KEP-ICI-EGIYVNIKTSIGISFFPKDGH--TSQELIKKADKAMYDAKKRGSNKFQIYKD 419 >gi|295699148|ref|YP_003607041.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Burkholderia sp. CCGE1002] gi|295438361|gb|ADG17530.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Burkholderia sp. CCGE1002] Length = 694 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 21/200 (10%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL- 122 +L+ L L + + LLG +S +I +L+ +D L+GL N + + Sbjct: 227 VLIVTLMLSRFDVRTTFLLGAVSKL--------NGQIVRLATLDALTGLPNRATLTERIE 278 Query: 123 ----GSYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 G+ ++ S ++F D+D FK IND+ GH GD V++ + +L + V RLG Sbjct: 279 RAISGARRQRTSFAVLFMDLDGFKTINDSLGHSAGDAVLSAFAQRLQQCVRSSDTVARLG 338 Query: 177 GEEFAAAA--LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPI 233 G+EF A L S + AA+ L ++ Q S + + S GIA + + Sbjct: 339 GDEFVVLAEHLTSGDDAAALADGVLERM---RQGTWSDEQPLQVMPSIGIALYPRDGDSV 395 Query: 234 STIIYRADQALYVAKKSGRN 253 T++ AD A+Y AK++GR Sbjct: 396 ETLLQHADAAMYEAKRAGRG 415 >gi|238791756|ref|ZP_04635393.1| hypothetical protein yinte0001_14720 [Yersinia intermedia ATCC 29909] gi|238728860|gb|EEQ20377.1| hypothetical protein yinte0001_14720 [Yersinia intermedia ATCC 29909] Length = 572 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 13/176 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 +L + R+ +R D L+ L N AF L N L+++ DIDYFK ND Sbjct: 389 KLVKANRRLEIQARTDSLTKLPNRRAFKKVLAHEFMRAKRSNSPLAVLMIDIDYFKNFND 448 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD + ++ L V R GGEEFAA + ++ A+++A + + I Sbjct: 449 CYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDQRGASLVAEHILQSI 508 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNR 254 I S +TIS G+ + + T ++ ADQALY +KK+GRN+ Sbjct: 509 RAMGIKHSDSKFRKVTISLGLTIYQANQHVGTTDQADLMLAADQALYYSKKNGRNQ 564 >gi|170693076|ref|ZP_02884237.1| diguanylate cyclase [Burkholderia graminis C4D1M] gi|170142074|gb|EDT10241.1| diguanylate cyclase [Burkholderia graminis C4D1M] Length = 524 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 14/192 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEK 128 + +S LL + L++ + + +L+ D L+GL N + L + Sbjct: 323 VIVSWLLAFA----LRDKLRAQAALMRLAATDPLTGLSNRRVLDNRLDEEWRRARRTGQP 378 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 LS +F DID+FK+ ND +GH GD ++ +++ + + V R GGEEFA + Sbjct: 379 LSALFIDIDHFKRFNDTYGHASGDDALSAVAECISSTVRRAVDLVARYGGEEFAVILPDT 438 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALY 245 S AA +A +R+ ++ I S+ +T+S G A + ++ AD+ LY Sbjct: 439 SADGAAAVAEKIRRNVQAQDILHGGDGSVAVTVSVGCATMVPAQGANALDLLAAADRQLY 498 Query: 246 VAKKSGRNRVVC 257 +AK +GRNRV C Sbjct: 499 LAKAAGRNRVSC 510 >gi|161521079|ref|YP_001584506.1| response regulator receiver modulated diguanylate cyclase [Burkholderia multivorans ATCC 17616] gi|189352743|ref|YP_001948370.1| PleD-related family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|160345129|gb|ABX18214.1| response regulator receiver modulated diguanylate cyclase [Burkholderia multivorans ATCC 17616] gi|189336765|dbj|BAG45834.1| PleD-related family two-component system response regulator [Burkholderia multivorans ATCC 17616] Length = 345 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 14/177 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 ++L + + +L D L+GL N L + +LS++ D+D+FK N Sbjct: 162 QQLLEANLELRRLMHSDGLTGLSNRRYLDEYLAAEWRRGTRERAELSLLMIDVDHFKLYN 221 Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 D +GH GD+V +A Q + G R GGEEFA G+S A +L +R Sbjct: 222 DTYGHVAGDQVLRQVAATIAQCLRPSGD--LAARFGGEEFAVVMPGTSAGAARLLGEKIR 279 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255 ++ ++ + H+T+S G A P + +I AD+ALY AK GRNRV Sbjct: 280 LAVDALRLEHGQSTAGHVTVSIGGASIVPAPGLPTTALIEAADRALYRAKHDGRNRV 336 >gi|90408005|ref|ZP_01216177.1| regulatory component of sensory transduction system [Psychromonas sp. CNPT3] gi|90310849|gb|EAS38962.1| regulatory component of sensory transduction system [Psychromonas sp. CNPT3] Length = 526 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 11/183 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYN---EKLSIVFFDIDYFKQI 142 + EL + +I ++ D L+GL F I +L +K++++F D+D FK++ Sbjct: 331 ITELKHAKKQILYMANHDALTGLAMRQFFQDRLIKALADAKLNKQKIAVLFLDLDGFKKV 390 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRK 201 ND+FGH GD V+ ++ +L VGR+GG+EF +QE+ I ++ L K Sbjct: 391 NDSFGHHTGDFVLKEVAIRLTESVREIDTVGRIGGDEFCILLTNIKDQESTITISEKLIK 450 Query: 202 IIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 II+ SI I +S GIA H + ++ AD+A+Y K+ GRN +D Sbjct: 451 IIDKPY--KYKNESIDIGVSIGIALYPDHADTPEKLVELADKAMYTIKRKGRNNYALTTD 508 Query: 261 IEN 263 ++ Sbjct: 509 AQS 511 >gi|51102931|gb|AAT96080.1| GGDEF domain protein [Pseudomonas viridiflava] Length = 357 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 9/169 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNF 146 LK + +R +L++ D L+ + N AF+ + + + +F DID FK IND Sbjct: 168 LKAILTLESRFRELAQTDYLTSIPNRRAFMETFEGLIAEGAPGYFIMLDIDCFKLINDQH 227 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH VGD+V+ ++ L G+ + VGR+GGEEF G + A L S Sbjct: 228 GHDVGDQVLCSMAACLKATKGSCI-VGRIGGEEFGVLVAGHEQSNATHYILSLL-----S 281 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I +S T SAG+A ++ ++ AD +Y+AKK+G++ V Sbjct: 282 TIRVSMESPYRYTCSAGMAWFSTGSKMTDVLKLADTNMYLAKKNGKDCV 330 >gi|51243987|ref|YP_063871.1| hypothetical protein DP0135 [Desulfotalea psychrophila LSv54] gi|50875024|emb|CAG34864.1| hypothetical protein DP0135 [Desulfotalea psychrophila LSv54] Length = 784 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 2/135 (1%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 +++ + DID+FK +ND GH GD V+ L+ L +V R GGEEF Sbjct: 641 QQVGFIMADIDHFKMVNDEEGHQAGDSVLRQLAKILKMVIREQDLTIRYGGEEFLIILHN 700 Query: 187 SSEQEAA-ILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQAL 244 SE A I+ +R +E + + + G I TIS G A + +I AD AL Sbjct: 701 ISEASAPEIVGEKIRAAVEKTPLTLPGGKQIQKTISIGTANFPKDASKLYQVIKFADVAL 760 Query: 245 YVAKKSGRNRVVCFS 259 Y AK+ GRNRV+ F+ Sbjct: 761 YKAKEQGRNRVLGFN 775 >gi|84388948|ref|ZP_00991156.1| Response regulator [Vibrio splendidus 12B01] gi|84377012|gb|EAP93884.1| Response regulator [Vibrio splendidus 12B01] Length = 413 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 5/151 (3%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL N + E SI DID+FK++ND +GH GD V+ + + F Sbjct: 258 DALTGLWNRRYLFNQTCKGCEHRSIAMMDIDFFKKVNDTYGHDGGDAVLIEVGKIIKEHF 317 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE 226 + V R GGEEF + E L + +R IEN ++ S I +++S G+ + Sbjct: 318 KDDLAV-RFGGEEFCIQSCEPFEDFIETLES-MRVAIENHEVQHDS-HVIKVSMSIGVTD 374 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + + I AD+ LY AKK GRN+++C Sbjct: 375 Q--EGSLDEQIKAADELLYTAKKQGRNQLIC 403 >gi|158422834|ref|YP_001524126.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571] gi|158329723|dbj|BAF87208.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571] Length = 514 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 93/203 (45%), Gaps = 23/203 (11%) Query: 72 VIISITISLLLGYISGSI---LKELFISYNRIS----QLSRIDCLSGLLNHSAF------ 118 V++ L +G+ S +I L+ + +R+ QLS D L+G+ N F Sbjct: 291 VLVGTAAVLTVGFASIAIALVLRHDLMRRSRLQAELLQLSLTDDLTGIANRRRFFDVAIR 350 Query: 119 ----ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVG 173 LGS ++++ DID FK +ND GH GD V+ ++ + P Sbjct: 351 EWQRAQRLGS---PVAVLMIDIDRFKLLNDRLGHAAGDAVLQAIAQLIRHSLRRPADLAA 407 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF A + A A +R +E I ++ I I+A IA E Sbjct: 408 RYGGEEFTAILPDTDMAGAFQTAERIRTQVERDVIRGDHPVTVSIGIAAAIA--SPNETF 465 Query: 234 STIIYRADQALYVAKKSGRNRVV 256 ++ AD+ALY AK+SGRNRV+ Sbjct: 466 ENVVAAADRALYRAKESGRNRVM 488 >gi|325929521|ref|ZP_08190635.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] gi|325540031|gb|EGD11659.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] Length = 569 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL LS++ D+D+FKQ ND+ GH GD ++A + Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L+ R GGEEF + +EA +A +R I ++ + +T Sbjct: 462 ELLLTRLRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRSYIAALAVSDGARALPKVT 521 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E +++I +AD ALY AK +GRNRV Sbjct: 522 ASIGVASFPADGEQGASLIQKADAALYRAKHAGRNRV 558 >gi|299132064|ref|ZP_07025259.1| diguanylate cyclase with PAS/PAC sensor [Afipia sp. 1NLS2] gi|298592201|gb|EFI52401.1| diguanylate cyclase with PAS/PAC sensor [Afipia sp. 1NLS2] Length = 321 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 30/173 (17%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNFGHPVGDKVIA 156 D L+GL N S F Y E + ++V D+D FK++ND FGH GD + Sbjct: 147 DPLTGLANRSLFQQR---YREVIGDTLNHGFASALVLIDLDRFKELNDTFGHEAGDACLR 203 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA--------AAALGSS-EQEAAILANDLRKIIENSQ 207 ++ +L F V RLGG+EFA A + S EQ A+L+ R + N Sbjct: 204 EIAMRLKRAFCNAGLVARLGGDEFALILRAPTNPARIESVLEQTVAMLS---RPVFWNG- 259 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + G S I A + R H+ I+ + AD ALY AK +GRN+V F+D Sbjct: 260 LRLEVGAS----IGAALIGRPHRRRITELFADADIALYAAKAAGRNKVHLFND 308 >gi|188990916|ref|YP_001902926.1| Putative signal transduction protein [Xanthomonas campestris pv. campestris str. B100] gi|167732676|emb|CAP50870.1| Putative signal transduction protein [Xanthomonas campestris pv. campestris] Length = 788 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 9/173 (5%) Query: 98 NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + ++ +R D L+GL+N I S ++ F D+D+FK +ND FGH V Sbjct: 351 DEVAYHARHDALTGLINRREIERRLQRLIDPPQSPQLCHALCFVDLDHFKLVNDTFGHAV 410 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDK + +D + + ++GRLGG+EFA + + A L + ++ + Sbjct: 411 GDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLVNTDLAHAHTLLERMHGVL-GQPWSH 469 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 G + + S G+ E R + ++ ++ AD A + AK+ GRNR+ F + + Sbjct: 470 QGGRPLTPSCSFGVVEIRQGADDVNLLMTAADLACHAAKEEGRNRIRSFGETD 522 >gi|54301927|ref|YP_131920.1| GGDEF family protein [Photobacterium profundum SS9] gi|46915347|emb|CAG22120.1| hypothetical GGDEF family protein [Photobacterium profundum SS9] Length = 133 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 4/130 (3%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + DID FK +ND++GH GDK++ +++ + + RLGGEEF SS Sbjct: 1 MAIVDIDLFKNVNDSYGHLAGDKMLIHIANTVSESMNEDEHIARLGGEEFVLLLKESSHI 60 Query: 191 EAAILANDLRKIIENSQINISSG---PS-IHITISAGIAERCHKEPISTIIYRADQALYV 246 + LR I+N ++++ S PS I T+S G+ + + ++AD+ALY Sbjct: 61 KLVSRLETLRDTIQNQKVSVLSTHNIPSKISCTVSIGLTKIMENITFKSSYFKADRALYQ 120 Query: 247 AKKSGRNRVV 256 AK++GRN+V+ Sbjct: 121 AKRNGRNQVI 130 >gi|117922460|ref|YP_871652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. ANA-3] gi|117614792|gb|ABK50246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. ANA-3] Length = 1228 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 22/172 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 NR+S SR++ + AFIS +++++F D+D+FK IND GH VGD ++ Sbjct: 813 NRLSLQSRLEKVF----QEAFIS-----QTQIAVMFIDMDHFKNINDTLGHHVGDMLLLE 863 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK------IIENSQINIS 211 ++ +L + G V RLGG+EF + A +A LR +I+N ++ Sbjct: 864 VARRLKNIMGNDDIVARLGGDEFVVVLSDTDHDRVAKVAEALRSGLNQTYLIDNKPLH-- 921 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S PSI I++ + + ++ AD A+Y AK +GRN F+ N Sbjct: 922 SSPSIGISLFP-----TDGDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMN 968 >gi|109899877|ref|YP_663132.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109702158|gb|ABG42078.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 484 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 LS++ FD+D FK++ND FGH GDK + + + +GR GG+EF A S Sbjct: 349 PLSLIMFDMDNFKKVNDTFGHSAGDKALQRVCRAAQLSLRPTDLLGRFGGDEFVALLPDS 408 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVA 247 + +A +A + + +++ P I S G+A+ + + + AD ALY A Sbjct: 409 TINDAQQVAQRILSNVNAAEV----APGQPIECSFGVAQLKRNQNFTELFNVADSALYKA 464 Query: 248 KKSGRNRVVCFSDIE 262 K+ GRN VV +E Sbjct: 465 KQRGRNTVVNEDGVE 479 >gi|332529422|ref|ZP_08405382.1| diguanylate cyclase with GAF sensor [Hylemonella gracilis ATCC 19624] gi|332041138|gb|EGI77504.1| diguanylate cyclase with GAF sensor [Hylemonella gracilis ATCC 19624] Length = 465 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 28/178 (15%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+G+ N F + + + L + D+D+FK+INDN GHP GD V+ + Sbjct: 284 TDALTGVHNRRYFEARCLEEVKAAQRSRQPLVCLLLDVDHFKRINDNHGHPAGDAVLREV 343 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS--GPSI 216 + V R GGEEF + Q A+ +R I ++ + + + + Sbjct: 344 GQVIRGQLRGNDVVARYGGEEFVLLLPNTPLQGGVETADRIRLAIASAAMPVQTEQDTPL 403 Query: 217 HITISAGIAERCHKE----------------PIST---IIYRADQALYVAKKSGRNRV 255 HIT+S G A+ +E P+ + ++ +ADQALY AK++GRNRV Sbjct: 404 HITVSLGAAQMDMEERKPVAEAGDAAPRRSTPVESMKRLVQQADQALYAAKQAGRNRV 461 >gi|330966507|gb|EGH66767.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 763 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 122/275 (44%), Gaps = 53/275 (19%) Query: 30 YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76 Y +F +F V + L + L L ++ EN L L I +I Sbjct: 185 YAGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 244 Query: 77 TISLLLGYISG------------------SILKELFISYNRISQLSRIDCLSGLLNHSAF 118 T+ ++ G IS ++L +L + + Q++ D L+ L+N F Sbjct: 245 TLLIIAGSISAAMADKKLQGKEHDLQRVNTLLSQLDQARVSLQQVAHYDPLTNLINRRGF 304 Query: 119 ----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 L + L+++F DID+FK+IND+ GH GD+++ +++++ Sbjct: 305 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA----- 225 V R GG+EF +EA LA+ ++++ + I+ +G + +T S GIA Sbjct: 365 VARFGGDEFCILLSIPDYEEARHLAH---RVMDKMKETIALAGRRMVMTTSIGIAVFPRD 421 Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 C + ++ AD ALY +K +GRNRV FS Sbjct: 422 GSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451 >gi|310778591|ref|YP_003966924.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] gi|309747914|gb|ADO82576.1| diguanylate cyclase [Ilyobacter polytropus DSM 2926] Length = 264 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 4/139 (2%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGS 187 L+++ FDIDYFK+ ND +GH GD+++ + + L F G +GR GGEEF + Sbjct: 127 LTLLMFDIDYFKKYNDRYGHVEGDRILRIIGNLLKKNFKGKTNAIGRYGGEEFLIVLPHT 186 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALY 245 + + L +K ++ + P IT+S G+ + E + ++ + D+ LY Sbjct: 187 DLRTSISLVEKFQKKLKICFLEHGDSPFGEITVSIGVKSGKISEYESVDDLVRKVDEELY 246 Query: 246 VAKKSGRNRVVCFSDIENN 264 AK+SGRN+ FS+ +N Sbjct: 247 RAKESGRNK-YSFSEKDNR 264 >gi|254497786|ref|ZP_05110555.1| truncated transposase [Legionella drancourtii LLAP12] gi|254352992|gb|EET11758.1| truncated transposase [Legionella drancourtii LLAP12] Length = 390 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 8/168 (4%) Query: 100 ISQLSRIDCLSGLLNH---SAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S+L+ D L+ L N + F+S + L + DID FK ND + H GD Sbjct: 223 LSELTLHDPLTNLYNRRYLNEFLSRELVRIAREKNTLCVAMLDIDNFKNFNDTYSHLAGD 282 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + L F R GGEEF+ L + A RK ++N+ Sbjct: 283 EVLKSIGQLLARNFRKSDISFRFGGEEFSVILLNMTLDNAVQRMEQFRKQLKNTIAYYKD 342 Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 P ITIS G+AE + I II AD ALY AK++G++RV ++ Sbjct: 343 RPLPGITISIGVAEAPQQGATIEEIIKAADHALYAAKEAGKDRVNSYN 390 >gi|240137511|ref|YP_002961982.1| putative diguanylate cyclase/phosphodiesterase, GGDEF and EAL domains [Methylobacterium extorquens AM1] gi|240007479|gb|ACS38705.1| putative diguanylate cyclase/phosphodiesterase, GGDEF and EAL domains [Methylobacterium extorquens AM1] Length = 668 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GLLN + FI E+L+ ++ D+D FK +ND +GH GD+V+A ++ Sbjct: 241 DGLTGLLNRAGFIQR---AEEQLAAGASVCLMLLDLDGFKSVNDVYGHSTGDRVLAEVAR 297 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHIT 219 ++ V RLGG+EFA + E+ A LA L + + + +G + Sbjct: 298 RIRVAVPVDCDAARLGGDEFALVYDSARVIESPAALAERLIRTVAQPFESFDTG---RLG 354 Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S GI CH+ + ++ ++ AD+ALY AK SGRN F D Sbjct: 355 MSIGI---CHRPSDSLTHLLSCADEALYAAKHSGRNHFRLFDD 394 >gi|217968132|ref|YP_002353638.1| diguanylate cyclase [Dictyoglomus turgidum DSM 6724] gi|217337231|gb|ACK43024.1| diguanylate cyclase [Dictyoglomus turgidum DSM 6724] Length = 718 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 10/164 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 + +++L+ D L+ L N L Y+ LS++ D+D FK IND GH Sbjct: 547 FEELNRLAITDPLTQLFNRRYIEEELRKEIERSKRYSRPLSVMVLDLDNFKIINDILGHQ 606 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ + + L VGR GG+EF ++ +++ +AN + K +E +I Sbjct: 607 YGDEVLKKIGENLKKSCRKVDTVGRFGGDEFVIILPETNLEKSIKVANKIIKNLEKMEIK 666 Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSG 251 +G I+I+IS GIA K+P I+ AD A+Y AK+ G Sbjct: 667 FPNGEKIYISISIGIASYPETSKDP-EKILSLADSAMYNAKRLG 709 >gi|170768708|ref|ZP_02903161.1| sensory box-containing diguanylate cyclase/cyclic diguanylate phosphodiesterase [Escherichia albertii TW07627] gi|170122256|gb|EDS91187.1| sensory box-containing diguanylate cyclase/cyclic diguanylate phosphodiesterase [Escherichia albertii TW07627] Length = 652 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFK 140 SG+ + E + R+ L+ D ++GL N +A + + K+ +V+ D+D FK Sbjct: 210 SGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDNAIKQADGNKVGVVYLDLDNFK 269 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILA 196 ++ND +GH GD+++ +S ++ + RLGG+EF A +S E A+ + Sbjct: 270 KVNDAYGHVFGDQLLREVSLAILSCLEQDQVLARLGGDEFLILAPNTSQSALEAMASRIL 329 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR+ I + +G S+ I++S H + II AD A+Y AK+ GR + Sbjct: 330 TRLRQPFSIGLIEVYTGCSVGISLSPQ-----HGMDSAAIIRHADTAMYTAKEGGRGQFC 384 Query: 257 CFS 259 FS Sbjct: 385 VFS 387 >gi|148978394|ref|ZP_01814888.1| GGDEF domain protein [Vibrionales bacterium SWAT-3] gi|145962420|gb|EDK27699.1| GGDEF domain protein [Vibrionales bacterium SWAT-3] Length = 657 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 20/176 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N + +SS +++ ++++ D+D FK +NDN+GH G Sbjct: 489 RLEHLAHHDALTGLANRARLYKVMDEVVSSSNYASQQFAVIYLDLDGFKHVNDNYGHDAG 548 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII------EN 205 D ++ +S++L+ V RL G+EF +++ A LA L +I + Sbjct: 549 DAILKEVSNRLLSQVRAGDLVARLSGDEFVLIIKQTNKVMLAKLAERLLTLIGQTVHHKQ 608 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +N+ + IH+ ++ + I I+ AD+A+Y AK G+ + V SD+ Sbjct: 609 RSLNVGASLGIHLVDNS-------EHDIDAILKIADEAMYHAKHQGKGQFVFSSDV 657 >gi|126665495|ref|ZP_01736477.1| hypothetical protein MELB17_22920 [Marinobacter sp. ELB17] gi|126630123|gb|EBA00739.1| hypothetical protein MELB17_22920 [Marinobacter sp. ELB17] Length = 274 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 9/166 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+S + D L+ L N AF ++ G ++ D+DYFK +ND GH G Sbjct: 103 RLSWEASHDPLTQLFNRRAFGQGLDKALAEAGQNKVATVMLLIDLDYFKPVNDKGGHLTG 162 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DK++ L+D L V RLGG+EF + + A LA +R IE + I Sbjct: 163 DKLLHRLADLLRQTVHQSDTVARLGGDEFGILLPSCNMERAEALAERIRAGIE-ALIVEH 221 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G +T S G+A+ I+ RAD+ Y+AK GRN+VV Sbjct: 222 EGEDYSVTASIGLAQINPTDTSTKAIMARADEGSYLAKGRGRNQVV 267 >gi|90022874|ref|YP_528701.1| hypothetical protein Sde_3232 [Saccharophagus degradans 2-40] gi|89952474|gb|ABD82489.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 498 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 17/165 (10%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 YNR + R+D F + S + L + DID+FK++ND +GH VGD VI Sbjct: 339 YNRRAMRERLD--------DEFAKAQNS-GKDLVCIMLDIDHFKRVNDTYGHGVGDVVIK 389 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + V R GGEEF ++ ++ I+A R IE + Sbjct: 390 MVAQVVKEAVRDSDIVARFGGEEFCVVLPNATVEQVKIIAKRCRMTIETQNCG-----GV 444 Query: 217 HITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +T S GIA K P + +I++AD+ALY +K++GRN V + Sbjct: 445 KVTSSFGIAALSLGAKSP-NDLIHQADEALYNSKQNGRNMVSVWQ 488 >gi|159184622|ref|NP_354139.2| hypothetical protein Atu1119 [Agrobacterium tumefaciens str. C58] gi|159139920|gb|AAK86924.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 320 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 6/159 (3%) Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+ L N +AF+ LG+ K S+V DID+F++IN +G G+K + L+ Sbjct: 145 DSLTALPNRAAFLEKLGALFAKDRAASATSLVLLDIDHFREINGKYGSSAGNKALRRLAA 204 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 FV R+GG+EFA G + A +A LR+ +E S G H+T+ Sbjct: 205 LFRKTIKKDDFVARIGGDEFAFLFAGVPQNTAEAIAERLRQSVEALHFATSGGDGEHLTV 264 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S G+A + A+ AL A+ RN V+ +S Sbjct: 265 SIGVAAVDGTATAAEFFGHAELALLSARSGTRNCVIGYS 303 >gi|71734073|ref|YP_272405.1| sensory box protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554626|gb|AAZ33837.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 316 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK +ND +GH GD V+ +++ GR+GGEEFAA G + Sbjct: 187 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 246 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247 A +A L++ I+ S G + IT S G+ ++ + T+ RAD A+Y A Sbjct: 247 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGPEDSSLETLYGRADAAMYQA 305 Query: 248 KKSGRNRVV 256 K+ G+N++V Sbjct: 306 KRQGKNQIV 314 >gi|113972148|ref|YP_735941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. MR-4] gi|113886832|gb|ABI40884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. MR-4] Length = 1209 Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 22/172 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 NR+S SR++ + AF+S +++++F D+D+FK IND GH VGD ++ Sbjct: 794 NRLSLQSRLETVF----QEAFVS-----QTQIAVMFIDMDHFKNINDTLGHHVGDMLLLE 844 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK------IIENSQINIS 211 ++ +L + + V RLGG+EF + A +A LR II+N ++ Sbjct: 845 VARRLKNIVSSDDIVARLGGDEFVVVLSDTDHDSVAKVAEALRSGLNQTYIIDNKPLH-- 902 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S PSI I++ + + ++ AD A+Y AK +GRN F+ N Sbjct: 903 SSPSIGISLFP-----TDGDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMN 949 >gi|330992597|ref|ZP_08316545.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1] gi|329760796|gb|EGG77292.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1] Length = 582 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 16/192 (8%) Query: 82 LGYISGSI-----LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--------K 128 LG I G + + EL + +R+ L+ D L+GL N F + L + E + Sbjct: 115 LGAIEGYVATRFEITELMNTRDRLKSLAATDPLTGLFNRGGFNNVLQTAVEHKAQNITRE 174 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 + +V FD+D FKQIND GH GD V+ +S +L+ + V RLGG+EFA + Sbjct: 175 IMLVMFDLDGFKQINDIHGHHAGDVVLKVISARLMALVSPEDAVCRLGGDEFALILDHTL 234 Query: 189 EQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVA 247 + L + L +++ + I G + ++++ S G++ +E ++ AD ALY A Sbjct: 235 TRRP--LQDILDQLLAELEAPIEVGNTMVNVSGSIGVSPVASQESAESLQKNADIALYAA 292 Query: 248 KKSGRNRVVCFS 259 K++G ++ F Sbjct: 293 KRAGGHQARMFD 304 >gi|317152638|ref|YP_004120686.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316942889|gb|ADU61940.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 958 Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 13/163 (7%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N S +S K++++F D+D FK+IND+FGH GD ++ ++ Sbjct: 528 DGLTGLPNRVLVLDRLSMALSHANRTGTKVAVLFLDLDNFKKINDSFGHAQGDTLLKAVA 587 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++LV ++ V R GG+EF + E+E LA L+++ E + + G + I Sbjct: 588 ERLVALYRDEDTVARQGGDEFLVVVVDVHEEREVVDLAEGLQRVFE--EPFVIKGQEVFI 645 Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 T S G+ ++P S ++ AD A+Y +K GRN F+ Sbjct: 646 TPSIGVTLYPDDGQDPAS-LVKNADMAMYQSKAKGRNSYFLFT 687 >gi|262403389|ref|ZP_06079949.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio sp. RC586] gi|262350888|gb|EEZ00022.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio sp. RC586] Length = 361 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 19/164 (11%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+G LN S L NE + I DID+FK IND +GH GDKVI Sbjct: 180 LSTRDALTGTLNRYQLDSFLKKNIRLRQIGNESVVIAVIDIDHFKSINDLYGHDTGDKVI 239 Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 +Q+V + T + RLGG+EF ++ EA ++ + + I+ + Sbjct: 240 ----NQVVEMINTHSRELDLLFRLGGDEFLLLFENTTVTEATLVMSHIGCRIQQTHYPNH 295 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +TIS G+AE + + RAD +LY +KK G+NRV Sbjct: 296 AK----VTISVGLAEVLRTDDPEQWVKRADLSLYHSKKMGKNRV 335 >gi|189424221|ref|YP_001951398.1| diguanylate cyclase/phosphodiesterase [Geobacter lovleyi SZ] gi|189420480|gb|ACD94878.1| diguanylate cyclase/phosphodiesterase [Geobacter lovleyi SZ] Length = 859 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 13/196 (6%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG------ 123 SLVI SI +LL + GSI K ++ + + D L+ L N F LG Sbjct: 409 SLVINSILTTLL--NVIGSI-KAIYKYTKDLEYYATRDPLTNLFNQRVFWELLGYEIGRA 465 Query: 124 -SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 ++++ ++ D+D FK IND +GH VGDK + ++D + + R GG+EFA Sbjct: 466 ERHHQQFGVLVIDLDNFKHINDTYGHLVGDKYLVQIADTIHASLRLGDILARYGGDEFAI 525 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRA 240 + ++ ++AN +R+ +E + + G I T S G A C H + A Sbjct: 526 VLPDADHEQVHMVANRIREAMEAMTLVTADGSKIRGTASIGYA-VCPDHATTAKDLFLFA 584 Query: 241 DQALYVAKKSGRNRVV 256 D Y AK G+N +V Sbjct: 585 DNMTYKAKSLGKNCIV 600 >gi|156743760|ref|YP_001433889.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM 13941] gi|156235088|gb|ABU59871.1| diguanylate cyclase with GAF sensor [Roseiflexus castenholzii DSM 13941] Length = 732 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 10/141 (7%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+++ D+D FKQIND +GHP+GD+V+ +S + + R GGEE A L + Sbjct: 589 LAVILADLDDFKQINDVYGHPIGDRVLQMVSTVFRRELRSGDLLARYGGEEI-IALLPET 647 Query: 189 EQEAAILA-NDLRKIIENSQINISSGPSIHITISAGIAERCHKEP-----ISTIIYRADQ 242 + E A+ LR I+ + + + G + +T S G+A EP + +I +ADQ Sbjct: 648 DHEGAVRGVERLRLILAQAVVATNQG-DVSVTASFGVA--IFAEPFDVPNVEQLITQADQ 704 Query: 243 ALYVAKKSGRNRVVCFSDIEN 263 AL AK++G+NRV + + ++ Sbjct: 705 ALLRAKQAGKNRVEVWHEKDH 725 >gi|258627626|ref|ZP_05722402.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580069|gb|EEW05042.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 314 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 20/183 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D LS L N F L +E L++V DID FK+ ND+FGH GD Sbjct: 135 LDKMAHTDSLSSLANRLKFDEQLNVEFKRSRRQSEPLTVVMIDIDEFKKFNDHFGHIAGD 194 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + I ++ L + P R GGEEFA + E+ A + N+L +E Q+ I+ Sbjct: 195 ECIRKIAHTLRSITKRPADLAARYGGEEFALILPSTEEEGAKSMVNELINAVE--QLVIA 252 Query: 212 SGPSIH---ITISAG----IAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIE 262 P +T+S G E+ E + + AD ALY +K++GRN+ F I Sbjct: 253 HSPEAMNQCVTVSVGYTVLYPEQVDFEQLKAVDVAQTADNALYTSKRNGRNQAT-FEPIP 311 Query: 263 NNT 265 T Sbjct: 312 TTT 314 >gi|254974322|ref|ZP_05270794.1| putative signaling protein [Clostridium difficile QCD-66c26] gi|255091718|ref|ZP_05321196.1| putative signaling protein [Clostridium difficile CIP 107932] gi|255313446|ref|ZP_05355029.1| putative signaling protein [Clostridium difficile QCD-76w55] gi|255516134|ref|ZP_05383810.1| putative signaling protein [Clostridium difficile QCD-97b34] gi|255649230|ref|ZP_05396132.1| putative signaling protein [Clostridium difficile QCD-37x79] gi|306519332|ref|ZP_07405679.1| putative signaling protein [Clostridium difficile QCD-32g58] Length = 832 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 13/165 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150 NR+ + D L+ + N +A+I L + N + +++ DIDYFK IND +GH V Sbjct: 669 NRLLDKVQRDSLTNIYN-AAYIRKLTTQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLV 727 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209 GDKV+ ++ L F VGRLGG+EF+ +E I ND+ I I Sbjct: 728 GDKVLIDVAKVLDESFAKDDIVGRLGGDEFSVYINDIINKEELINKCNDVYNHIH--LIK 785 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +G S+ I++ I +R + + AD ALY +K+ GRNR Sbjct: 786 LPNGESLSISMGVVITKRGQE--YDELYQIADNALYDSKRQGRNR 828 >gi|120556569|ref|YP_960920.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei VT8] gi|120326418|gb|ABM20733.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei VT8] Length = 759 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 12/170 (7%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ D L+ L N F ++ N +L++V+ D+D FK +ND FGH GD ++ Sbjct: 591 MAHYDALTNLPNRVLFSDRLHQSMAQARRQNYRLAVVYIDLDQFKPVNDAFGHDAGDGLL 650 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGP 214 ++ ++ + RLGG+EFAA + + IL + L +I ++ + Sbjct: 651 VEVARRMRATLREEDSLARLGGDEFAAIIVNVPDAVTLDILLSRLLTVI--AEPVWVANH 708 Query: 215 SIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSDIE 262 S+ ++ S G E I ++ +ADQA+Y AK+ G+NR CF D + Sbjct: 709 SVEVSASMGYTLYPQGEEIDGDQLLRQADQAMYRAKREGKNRYYCFQDAD 758 >gi|113477644|ref|YP_723705.1| response regulator receiver modulated diguanylate cyclase [Trichodesmium erythraeum IMS101] gi|110168692|gb|ABG53232.1| response regulator receiver modulated diguanylate cyclase [Trichodesmium erythraeum IMS101] Length = 357 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 11/163 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 ++S D L+G+ N + + L +K +S++ DID+FK ND +GHP GD Sbjct: 185 KISNTDPLTGIPNRYCWETVLQQDWKKSIYDAQPISLIMIDIDFFKLFNDAYGHPEGDIC 244 Query: 155 IAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 + ++ ++ T R GGEEF + + A +A +R + + +I N S Sbjct: 245 LRKVAQEIKKPLTRTTDLAARYGGEEFVVVLPNTGKHRAMFIAESIRMQVNSLKIVNEDS 304 Query: 213 GPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRN 253 +ITIS G+A K + +I +AD+ALY AKK+GRN Sbjct: 305 KVDKYITISLGVATTIPTIKSHLDELISQADKALYFAKKNGRN 347 >gi|269925562|ref|YP_003322185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Thermobaculum terrenum ATCC BAA-798] gi|269789222|gb|ACZ41363.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Thermobaculum terrenum ATCC BAA-798] Length = 1785 Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 8/155 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + F+ L YN +++F D+D FK +ND+ GH GD+++ + Sbjct: 1360 DALTGLPNRALFMDRLKGALARAKRYNSCCAVLFLDLDRFKHVNDSLGHQYGDQLLIEVG 1419 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++L+ V + V R GG+EF E E A + R I E + + +G ++I+ Sbjct: 1420 NRLLSVVRSADTVARRGGDEFTILLEPICELEYAKQVAE-RVIKELEKPFLINGQELYIS 1478 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 S GIA +I+ AD A+Y AK GR R Sbjct: 1479 TSIGIALSNEYSDAEELIHNADVAMYWAKSRGRAR 1513 >gi|218438776|ref|YP_002377105.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC 7424] gi|218171504|gb|ACK70237.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC 7424] Length = 960 Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 11/194 (5%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 ++ + L + + ++L + ++ L+ ID L+ + N F +L Sbjct: 761 LLTQLATQLAIAIQQSELHQQLQSTNQQLENLALIDQLTQIPNRRCFDHDLERHWQNLAR 820 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAA 183 LS++ DIDYFKQ ND +GH GD + ++ L V R GGEEF Sbjct: 821 QKRPLSLLLCDIDYFKQYNDTYGHSGGDVCLTQVAQALKASARRASDLVARYGGEEFVII 880 Query: 184 ALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPISTI--IYRA 240 + A +A +++K ++ ++ + +SG S ++T+S GIA + + +I I A Sbjct: 881 LPDTDNFGAIAVAQNIQKTLKELRLPHRASGVSSYVTVSIGIATLIPRSDLPSIELINAA 940 Query: 241 DQALYVAKKSGRNR 254 DQALY AK GR+R Sbjct: 941 DQALYQAKAQGRDR 954 >gi|88860382|ref|ZP_01135020.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Pseudoalteromonas tunicata D2] gi|88817580|gb|EAR27397.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Pseudoalteromonas tunicata D2] Length = 312 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSI--VFFDIDYFKQINDNFGHPVG 151 +I Q +D L+GL N SA L + ++LSI V D+D FK+IND+FGH G Sbjct: 143 KIQQQVWLDALTGLPNRSALFQYLTTQINNAQRKRLSINVVMLDLDGFKEINDDFGHQAG 202 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D V+ ++++L F+ RLGG+EF + E + + + + N I IS Sbjct: 203 DDVLIAVANRLNQNKRASDFIARLGGDEFIWVLVECHPDEKVLELLEEKLSLINEPIVIS 262 Query: 212 ---SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ++H+ S G+ ++ +I AD+A+Y++K G+N++ Sbjct: 263 VNDTPHNVHVGASIGVTTWHGEQNPQMLISTADKAMYISKNKGKNKI 309 >gi|207728363|ref|YP_002256757.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] gi|206591609|emb|CAQ57221.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] Length = 636 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 21/183 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGH 148 + RI L+ D L+GLLN A +L N ++S++F D+D FK IND GH Sbjct: 188 AQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNGTRVSVMFLDLDRFKNINDTLGH 247 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+++ ++ +L V RLGG+EF ++ R++ E Sbjct: 248 QFGDQLLREVAARLQACAREADTVARLGGDEFVVML-------ESLDGMGTRRVAERILA 300 Query: 209 NISS-----GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261 I + G + + +S GIA H + +T++ +AD A+Y+AK+ GRN F SD+ Sbjct: 301 AIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQTFTSDL 360 Query: 262 ENN 264 ++ Sbjct: 361 DDR 363 >gi|188996703|ref|YP_001930954.1| diguanylate cyclase with PAS/PAC sensor [Sulfurihydrogenibium sp. YO3AOP1] gi|188931770|gb|ACD66400.1| diguanylate cyclase with PAS/PAC sensor [Sulfurihydrogenibium sp. YO3AOP1] Length = 675 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 80/166 (48%), Gaps = 11/166 (6%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDK 153 +LS D L+GL N + + EK LSIV D+D FK+IND GH GD Sbjct: 511 KELSIRDPLTGLYNRRFALEFMNKEIEKSKRNGKPLSIVMIDLDDFKKINDIHGHSAGDN 570 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE-NSQINISS 212 ++ SD L R GGEEF +S+ + + +R + N+ +SS Sbjct: 571 ILKIFSDVLKKELRKSDISCRWGGEEFLLILPETSKDKTLDVIERIRMTFQLNTMGIVSS 630 Query: 213 GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVC 257 P ++T S GIA + I II AD LYVAK+ G+NRVV Sbjct: 631 RP--YLTASMGIASYPEDSDNIDEIIKIADDRLYVAKREGKNRVVT 674 >gi|156974799|ref|YP_001445706.1| hypothetical protein VIBHAR_02517 [Vibrio harveyi ATCC BAA-1116] gi|156526393|gb|ABU71479.1| hypothetical protein VIBHAR_02517 [Vibrio harveyi ATCC BAA-1116] Length = 537 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 13/163 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + +++ +D L+ LLN F +L Y + K S+V FDID FK IND +GH GD+ + Sbjct: 377 LKRMAELDPLTQLLNRRVFNDNLLHYINGDVKFSLVGFDIDRFKLINDKYGHLAGDEALL 436 Query: 157 FLSDQLV---VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ +LV ++ G + R GG+EF + + + E A + LR I+ +S + S Sbjct: 437 HVT-KLVNANLLDGDRFY--RAGGDEFCILSQVTDKGELATYLDKLRGIVASSPFDYEST 493 Query: 214 PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 P I S I HK E ++ ++ D LY +KK+GRN V Sbjct: 494 P---IICSLSIGAAVHKGEDPESLFHKMDVQLYQSKKNGRNSV 533 >gi|95930629|ref|ZP_01313363.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95133281|gb|EAT14946.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 368 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 14/177 (7%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145 L ++ + +++RID L+ + N F S +K LSI+ DID+FK+ ND Sbjct: 187 LEKAHAALERIARIDGLTQIANRRTFDESFTEQWQKSLVEQSPLSIILCDIDFFKRYNDT 246 Query: 146 FGHPVGDKVIAFLSDQLVVVFG--TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD ++ ++ L + V R GGEEF +S +EA A R I Sbjct: 247 YGHQQGDTCLSSVAQALEQTLSEQSSGLVARYGGEEFIFLLPATSVEEATAHAETARNNI 306 Query: 204 ENSQI-NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 E + + +S + ++T+S G++ + +P +I AD+ALY +K++GRNRV Sbjct: 307 EQLALEHQASEVADNVTLSLGVSCTIPQSDMQP-QHLIRTADEALYQSKETGRNRVT 362 >gi|239809507|gb|ACS26228.1| unknown [uncultured bacterium pJM6] Length = 417 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 73/158 (46%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F + + S++ D D FK IND FGH GD+V+ L+ Sbjct: 263 DALTGLFNRRHFYHITEAEQTHAMPLTQDYSLLLIDTDRFKSINDLFGHLKGDEVLCALA 322 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF +S A LA LR + +++++ P T Sbjct: 323 RTLEACARIDDLVFRWGGEEFLLLLPRTSLDVALNLAETLRATV--ARVSLPGLPR--FT 378 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A E I + R D ALY AK GRNRV+ Sbjct: 379 VSIGVARHEANESIDELFKRVDDALYKAKNEGRNRVLA 416 >gi|289208300|ref|YP_003460366.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] gi|288943931|gb|ADC71630.1| diguanylate cyclase [Thioalkalivibrio sp. K90mix] Length = 325 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 12/158 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N A I ++ LS++ DID+FK IN +GH GD+ + + Sbjct: 163 DPLTGIANRRALFEQAEHEIERAHRHHRPLSLLVLDIDHFKTINTQYGHAQGDEALRQFT 222 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIH- 217 + F+GR+GGEEF + + A L +I+E +++ + H Sbjct: 223 QCCARLLRDTDFMGRIGGEEFVMLLPETDQLGAEQLGA---RIVEAIPTLDVPGMNNEHR 279 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G A R E ++ RAD AL AK+SGRNR+ Sbjct: 280 MTVSIGAATRLEGEGFEDLLVRADDALSTAKRSGRNRL 317 >gi|213966819|ref|ZP_03394970.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] gi|301381949|ref|ZP_07230367.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13] gi|302058790|ref|ZP_07250331.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40] gi|302135168|ref|ZP_07261158.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928669|gb|EEB62213.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] Length = 366 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 9/159 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ +L+ D L+ + N AF+ S S E ++ +ID FK IND GH +GD++ Sbjct: 176 SKFRELAETDYLTSIPNRRAFMESFDSLIKGGESGYLIMLNIDNFKLINDRHGHEIGDRI 235 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L G+ GR+GGEEF G E A + + +++E + N P Sbjct: 236 LCSMAACLRATSGSHC-AGRIGGEEFGVLITGGDELTA---CDYILRLLETVRANFD--P 289 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + SAG+ +S + AD+++Y+AK++G++ Sbjct: 290 PYNYSCSAGMVRFSAASTMSEALSMADKSMYIAKRNGKD 328 >gi|170740443|ref|YP_001769098.1| diguanylate cyclase with PAS/PAC sensor [Methylobacterium sp. 4-46] gi|168194717|gb|ACA16664.1| diguanylate cyclase with PAS/PAC sensor [Methylobacterium sp. 4-46] Length = 554 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 21/169 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R + L+ D L+GL N F L S +++ D+D FK +ND+ GHP+G Sbjct: 375 RAAHLASHDPLTGLPNRLLFQERLARHLAETRSRGVPCAVLCLDLDGFKAVNDSLGHPIG 434 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAILANDLRKIIENS 206 D ++ ++D++ V RLGG+EFA G +E A L + +R+ + Sbjct: 435 DALLREVADRIRATLRASDTVARLGGDEFAVLLPGHQPRERSGRVAERLIDAVREPLRLK 494 Query: 207 QINISSGPSIHITISA--GIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ + G SI I ++ G+ E +I RAD ALY AK GRN Sbjct: 495 EMQVVVGVSIGIAVAPEDGLDE-------DDLIRRADVALYRAKGGGRN 536 >gi|104781568|ref|YP_608066.1| diguanylate cyclase [Pseudomonas entomophila L48] gi|95110555|emb|CAK15263.1| putative diguanylate cyclase (GGDEF) domain [Pseudomonas entomophila L48] Length = 375 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 101/204 (49%), Gaps = 19/204 (9%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-- 120 +IL E++ + +I IS Y++ ++++E R + S D L+G+ N AF+ Sbjct: 183 FILFESM---LFAIGIS----YVTLAMVRERAEVQLRTAAYS--DPLTGIGNRRAFMEHG 233 Query: 121 -----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 + ++++ D+D+FK+IND +GHP GD+V+ +++ R+ Sbjct: 234 THLLHDCAAQRVPVALLLCDLDHFKRINDQYGHPKGDQVLLAFAEEARRHLRQGDLFARI 293 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 GGEEFA G E A +A + + + I I++ A++C +S Sbjct: 294 GGEEFACLLPGGDEAAAEHVARRICAAFAALPLLEPGALGVSIGIASQPAQQCD---LSR 350 Query: 236 IIYRADQALYVAKKSGRNRVVCFS 259 ++ AD ALY AK+ GR+R + ++ Sbjct: 351 LLSMADHALYQAKQQGRSRALQYA 374 >gi|260682404|ref|YP_003213689.1| putative signaling protein [Clostridium difficile CD196] gi|260686003|ref|YP_003217136.1| putative signaling protein [Clostridium difficile R20291] gi|260208567|emb|CBA61247.1| putative signaling protein [Clostridium difficile CD196] gi|260212019|emb|CBE02568.1| putative signaling protein [Clostridium difficile R20291] Length = 837 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 13/165 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150 NR+ + D L+ + N +A+I L + N + +++ DIDYFK IND +GH V Sbjct: 674 NRLLDKVQRDSLTNIYN-AAYIRKLTTQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLV 732 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209 GDKV+ ++ L F VGRLGG+EF+ +E I ND+ I I Sbjct: 733 GDKVLIDVAKVLDESFAKDDIVGRLGGDEFSVYINDIINKEELINKCNDVYNHIH--LIK 790 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +G S+ I++ I +R + + AD ALY +K+ GRNR Sbjct: 791 LPNGESLSISMGVVITKRGQE--YDELYQIADNALYDSKRQGRNR 833 >gi|81301344|ref|YP_401552.1| diguanylate cyclase [Synechococcus elongatus PCC 7942] gi|81170225|gb|ABB58565.1| diguanylate cyclase (GGDEF domain) with PAS/PAC and GAF sensors [Synechococcus elongatus PCC 7942] Length = 1099 Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 77/158 (48%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N ++ + + I+ DIDYFK+ ND FGH GD V+ ++ Sbjct: 912 DPLTGLFNRRYLQEFFEQELARAKRSGDSIGILMLDIDYFKRFNDEFGHDAGDMVLKQVA 971 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L+ V R GGEE A G+S + +A A+ +R+ I I+ +T Sbjct: 972 RALLNQVRASDVVCRFGGEEIAILMPGASLEVSARKADQIRQAIAQLIISYHEQTLPSLT 1031 Query: 220 ISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256 IS G+A S T+I AD +LY AK +GRN VV Sbjct: 1032 ISIGVAAFPESGLASDTLIKSADTSLYQAKAAGRNCVV 1069 >gi|70730672|ref|YP_260413.1| diguanylate cyclase [Pseudomonas fluorescens Pf-5] gi|68344971|gb|AAY92577.1| diguanylate cyclase, putative [Pseudomonas fluorescens Pf-5] Length = 322 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 9/160 (5%) Query: 102 QLSRIDCLSGLLNHSAFIS----SLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q++ +D L+ L N F + +LG + +++FFD++ FKQIND +GH GD Sbjct: 162 QMASMDELTLLSNRRGFEALARHALGVCKRLEKPATLLFFDLNDFKQINDTYGHAEGDGA 221 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +D L + F +GRLGG+EF A + E + + LR+I++ + G Sbjct: 222 LKTFADVLRIAFRESDVIGRLGGDEFVALLTAADHVETSAIMARLREILDERNATLKRGY 281 Query: 215 SIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253 I ++ I + P I ++ AD+A+Y+ K++ + Sbjct: 282 DIRFSVGQ-IEYDAERHPDIEALLADADKAMYLHKQASKR 320 >gi|56751584|ref|YP_172285.1| hypothetical protein syc1575_c [Synechococcus elongatus PCC 6301] gi|56686543|dbj|BAD79765.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 1068 Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 77/158 (48%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N ++ + + I+ DIDYFK+ ND FGH GD V+ ++ Sbjct: 881 DPLTGLFNRRYLQEFFEQELARAKRSGDSIGILMLDIDYFKRFNDEFGHDAGDMVLKQVA 940 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L+ V R GGEE A G+S + +A A+ +R+ I I+ +T Sbjct: 941 RALLNQVRASDVVCRFGGEEIAILMPGASLEVSARKADQIRQAIAQLIISYHEQTLPSLT 1000 Query: 220 ISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256 IS G+A S T+I AD +LY AK +GRN VV Sbjct: 1001 ISIGVAAFPESGLASDTLIKSADTSLYQAKAAGRNCVV 1038 >gi|146278363|ref|YP_001168522.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17025] gi|145556604|gb|ABP71217.1| diguanylate cyclase [Rhodobacter sphaeroides ATCC 17025] Length = 347 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 101/218 (46%), Gaps = 24/218 (11%) Query: 57 PFYGLEYILVE----NLSLVIISITISLLLGYISGSILKELFISYNRISQL---SRIDCL 109 P L ++ V+ L + +I + ++L + G++L+ + R L ++ D L Sbjct: 131 PLVVLAWLPVDPEHSRLMIGMILVLLNLAGALVFGTLLQRERSAAQRERALVAETQTDAL 190 Query: 110 SGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 +G+LN +F GS L IV DID+FK++ND GH GD V+ + +L Sbjct: 191 TGVLNRRSFERRFADADGLAGSRGTGLMIV--DIDHFKRVNDVHGHEAGDIVLRAAATRL 248 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 V RLGGEEFA QEA A+ L++++ I + IT+S Sbjct: 249 RNAVRPGDSVIRLGGEEFAVLLPDVDAQEAERAAHRLQRML-TMNCRIDEARRVDITVSI 307 Query: 223 GIAERCHKEPISTII----YRADQALYVAKKSGRNRVV 256 G+ H P S + AD ALY AK GR RVV Sbjct: 308 GV---THLPPASAALPVASRTADGALYRAKSDGRARVV 342 >gi|319945119|ref|ZP_08019381.1| diguanylate cyclase [Lautropia mirabilis ATCC 51599] gi|319741689|gb|EFV94114.1| diguanylate cyclase [Lautropia mirabilis ATCC 51599] Length = 619 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 + Q S D L+ L N F L E+ L++ DID+FK++ND +GH GD Sbjct: 452 LEQASLRDPLTNLFNRRYFNEQLAIEFERASRARSPLALQTVDIDHFKRLNDRYGHEAGD 511 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ +S+ LV V R GGEEF G + A A+++R+ ++ + Sbjct: 512 RVLVQVSEVLVQNARAGDIVCRWGGEEFLILMPGLNGTSAKRRADEIRRKVQEKVETVGG 571 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 P +++S G+A H ++ +D+ALY +K +GRNRV Sbjct: 572 AP---VSVSIGVAAYPEHASDPEGLVNVSDRALYASKGAGRNRVT 613 >gi|318041085|ref|ZP_07973041.1| putative GAF sensor diguanylate cyclase [Synechococcus sp. CB0101] Length = 331 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 14/184 (7%) Query: 81 LLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVF 133 +L ++ +++EL + Q S ++GL N S F E+ L++ Sbjct: 149 MLQLMADLVMREL-----ELRQRSMQCPVTGLYNRSVFFRFGEQEFEQARDECTPLALFN 203 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 FDID F+QIN +GH GD+V+ L + G GR+G EEF+ + +S A Sbjct: 204 FDIDDFRQINMRWGHQAGDQVLLDLCAVVQKQLGHEDLFGRIGDEEFSVLLVNASMTRAM 263 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGR 252 LA +R+ I + + H IS GI + + + YRADQALY+AK +GR Sbjct: 264 ALAESIRQAIA-AMRGVFDQSDYHPNISGGITALADTDQSFADLFYRADQALYLAKGNGR 322 Query: 253 NRVV 256 N+V Sbjct: 323 NQVA 326 >gi|311692959|gb|ADP95832.1| sensory box/FOG: EAL domain/GGDEF domain containing protein [marine bacterium HP15] Length = 1162 Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 23/168 (13%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N S F L +++ ++++F D+D FK IND GH VGDK++ ++ Sbjct: 732 DLLTGLANRSLFNDRLKHDFELAKRHSQSMAVLFIDLDEFKPINDTLGHRVGDKLLVSVA 791 Query: 160 DQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRK--IIENSQINISS 212 ++L + + R GG+EF G +E+ A + +L K I+N++ Sbjct: 792 ERLNSLIRPSDTLARFGGDEFVLLLPDLEETGLAEEIAERILQELAKPHQIDNNE----- 846 Query: 213 GPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCFS 259 +HI+ S GIA H ++ RAD A+Y AK+ GR+ +S Sbjct: 847 ---LHISASIGIATNSHSSRFPEKLLQRADMAMYKAKQQGRDTYEIYS 891 >gi|302189448|ref|ZP_07266121.1| GGDEF [Pseudomonas syringae pv. syringae 642] Length = 523 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 18/178 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFKQIND 144 EL + N + ++ D L+ L N F ++L S N+ ++I+ DID+FKQ ND Sbjct: 328 ELNSARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAIILLDIDWFKQYND 387 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDL 199 +GH GD + Q+ + G + R GGEEF + A LA + Sbjct: 388 TYGHLQGDDCLR----QVAGLIGNSLDRSGDIAARYGGEEFVILLPETDLAGALRLAEKI 443 Query: 200 RKIIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R IE S I SS P ++IS+G+ K + + AD+ LY+AK GRNRV Sbjct: 444 RSSIEASCIEHSSSPLGRLSISSGVVAVNAAEKNRHTAALEEADRLLYLAKTKGRNRV 501 >gi|297539271|ref|YP_003675040.1| diguanylate cyclase [Methylotenera sp. 301] gi|297258618|gb|ADI30463.1| diguanylate cyclase [Methylotenera sp. 301] Length = 485 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 10/175 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL + +++ LS+ D L+G+ N +F L N+ L++ DID+FK+ ND Sbjct: 309 ELQLLNHKLEGLSKTDGLTGIANRRSFDDVLEIEWMRAKRANQPLALAMLDIDWFKRYND 368 Query: 145 NFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 ++GH GD+ + +S+ L + T V R GGEEF A S +A ++ + + + Sbjct: 369 HYGHQAGDECLRRVSNILASNLCRTGDLVARYGGEEFVFIAPAISGDQALEISRKICEAL 428 Query: 204 ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVV 256 + + ++T+S G+A + + ++ AD ALY AK+ GRNR + Sbjct: 429 HSLALPHELSTFGYVTVSVGVASITPQGSQKSDVLVKMADDALYQAKEQGRNRAL 483 >gi|229131569|ref|ZP_04260454.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] gi|228651887|gb|EEL07839.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] Length = 569 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS--IVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ EK+ +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF + E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTHDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|217975275|ref|YP_002360026.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS223] gi|217500410|gb|ACK48603.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS223] Length = 310 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 26/169 (15%) Query: 106 IDCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPVGD----KV 154 +D L+G+ N F L NE LS+V D+D+FK+ ND +GH GD +V Sbjct: 146 LDSLTGVANRRQFEQRLPEIWKHCCRNELALSVVMLDVDFFKRFNDRYGHQEGDQCLRQV 205 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKI-IENSQIN 209 +SD L FV R GGEEF L + A + N ++ + +E+ + + Sbjct: 206 AKAISDSLQRATD---FVARYGGEEFICILPETKLAGAIHTAQKIVNAVQALHLEHLESS 262 Query: 210 ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 +TISAG+A K ++ T+I ADQ LY+AK+SGRN+VV Sbjct: 263 FQD-----VTISAGVASVLPKSDLTWQTLIETADQQLYLAKESGRNQVV 306 >gi|71279665|ref|YP_270581.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71145405|gb|AAZ25878.1| sensory box/GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 297 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 93/185 (50%), Gaps = 25/185 (13%) Query: 85 ISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFF--D 135 I GSIL E + + QL+ D L+GL N + + SL + E ++ F D Sbjct: 112 IVGSILDITERKKAEKSLEQLALSDSLTGLDNRYSLMKSLKHSLLRQHRENFTLAFLMLD 171 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI- 194 +D FKQINDN+GHPVGD ++ ++++L F + R+GG+EF+ E+ I Sbjct: 172 LDGFKQINDNYGHPVGDALLIEVANKLKNHFRESDVIARVGGDEFSVILENIHSTESLIV 231 Query: 195 LANDLRK------IIENSQINISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVA 247 LAN++ +I+N++ I IS GIA E S II AD ALY Sbjct: 232 LANNILAEFLKPFVIDNNKFTIG--------ISIGIATSSFSECSSEDIIKHADAALYQV 283 Query: 248 KKSGR 252 K SG+ Sbjct: 284 KNSGK 288 >gi|326315660|ref|YP_004233332.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372496|gb|ADX44765.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 424 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 33/212 (15%) Query: 66 VENLSLVIISITIS---LLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 +E L V +++ + LL+G + +L++ I++ +R+D L G LN + ++ Sbjct: 201 LEALHFVALALALPAYVLLMGRVRLLHRLLQKTSSEMKSIAESARLDAL-GCLNRRSILA 259 Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 +L + L + D+D+FK+IND GH GD+V+ S + + F G Sbjct: 260 ALEEQKQLADESGIPLCLAVVDLDHFKRINDEMGHLCGDEVLRTFSQLAQQIVRSDDFFG 319 Query: 174 RLGGEEF--------AAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGI 224 R GGEEF AL + E+ + + ++D ++ + +T+S G+ Sbjct: 320 RYGGEEFLLIFPATPLLPALNTCERIRSQVESHDWKEPLRG-----------RVTVSVGV 368 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + E + RAD A+Y+AK+ GRN+VV Sbjct: 369 TQYVLGESVLEFFSRADTAMYLAKQGGRNQVV 400 >gi|218528994|ref|YP_002419810.1| diguanylate cyclase/phosphodiesterase [Methylobacterium chloromethanicum CM4] gi|218521297|gb|ACK81882.1| diguanylate cyclase/phosphodiesterase [Methylobacterium chloromethanicum CM4] Length = 668 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GLLN + FI E+L+ ++ D+D FK +ND +GH GD+V+A ++ Sbjct: 241 DGLTGLLNRAGFIQR---AEEQLAAGASVCLMLLDLDGFKSVNDVYGHSTGDRVLAEVAH 297 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHIT 219 ++ V RLGG+EFA + E+ A LA L + + + +G + Sbjct: 298 RIRVAVPVDCDAARLGGDEFALVYDSARVIESPAALAERLIRTVAQPFESFDTG---RLG 354 Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S GI CH+ + ++ ++ AD+ALY AK SGRN F D Sbjct: 355 MSIGI---CHRPSDSLTHLLSCADEALYAAKHSGRNHFRLFDD 394 >gi|332533290|ref|ZP_08409156.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas haloplanktis ANT/505] gi|332037172|gb|EGI73628.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas haloplanktis ANT/505] Length = 673 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 8/167 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS----YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ Q + D L+ L N F L S K +++F D+D FK++ND+ GH GD + Sbjct: 240 QLQQYAYQDGLTDLPNRRYFYEKLQSLVSIKGMKFALIFIDLDGFKEVNDSLGHDYGDLL 299 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSG 213 + ++ +L T V RLGG+EF G +S EA+ +A ++ + S I I Sbjct: 300 LHQVATRLQSCITTKDTVARLGGDEFTLILEGVNSPDEASKIAEAVKSSLMQS-IKIKK- 357 Query: 214 PSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++++T S G+ + ++ RADQA+Y++K GRNR FS Sbjct: 358 ETVYVTASIGLTFFPADGLTVEELVRRADQAMYLSKNKGRNRYEFFS 404 >gi|320158258|ref|YP_004190636.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] gi|319933570|gb|ADV88433.1| GGDEF family protein [Vibrio vulnificus MO6-24/O] Length = 446 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 31/218 (14%) Query: 52 YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI----D 107 Y L P+Y I L+GY + IL +F++ R+ ++ D Sbjct: 240 YAALMPWY---------------QTQIVRLIGYPTALILCLVFLAIYRLYTMAHSRSLHD 284 Query: 108 CLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 L+GL N F+ SL + ++ +++ D+D FKQIND GH GDKV+ Sbjct: 285 ELTGLPNRRYFMYSLEHHFEHAKKQGRDDTFAVINLDLDRFKQINDTHGHAAGDKVLIAC 344 Query: 159 SDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +++L + V R+GG+EF +A + E++ IL N L+ + + I + G I+ Sbjct: 345 AERLKSTLRSTDLVARIGGDEFLVLSARMTHEKDMEILLNKLKAALCSMPI-VYEGELIY 403 Query: 218 ITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254 + IS G H+ S ++ +ADQ +Y KK+ + R Sbjct: 404 LHISIGYCLFHHEMKDSEEMLKQADQRMYNEKKANKMR 441 >gi|318603956|emb|CBY25454.1| hmst protein [Yersinia enterocolitica subsp. palearctica Y11] Length = 523 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 9/156 (5%) Query: 104 SRIDCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 ++ D ++GL N ++L + S++ DID+FK+IND++GH VGD+VI L+ Sbjct: 370 AQTDPMTGLYNRRGLATTLEPIVQLGQHFSVIALDIDHFKEINDSYGHDVGDEVIKQLAI 429 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHIT 219 Q+ + R GGEEF + + +A LR +E + NI IT Sbjct: 430 QIRESSRDSDILCRSGGEEFLMLLPSTVPDVSTQVAKRLRHNVEMMVMANIRP-----IT 484 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS G+A + + RAD+ALY AK+ RNRV Sbjct: 485 ISLGVAFWNGEGTPEDALKRADEALYRAKQQWRNRV 520 >gi|310658061|ref|YP_003935782.1| diguanylate cyclase [Clostridium sticklandii DSM 519] gi|308824839|emb|CBH20877.1| Diguanylate cyclase [Clostridium sticklandii] Length = 524 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 24/210 (11%) Query: 69 LSLVIISITISLLL---GYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-- 123 L L+I++ ISL++ G S I K L + + ID L+ + + L Sbjct: 321 LILIIVAAGISLVIHIEGIYSNKINKNL-------KREADIDALTNAFSRRRGVEELSNA 373 Query: 124 --SY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 SY N+ +I+ FD+D FK INDN+GH VGD V+ + V + + R GG+ Sbjct: 374 HRSYMRGNKNPAIMMFDLDRFKLINDNYGHDVGDMVLRRTVQSINEVVRSSDIIIRWGGD 433 Query: 179 EFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS---IHITISAGIA--ERCHKEPI 233 EF G ++ +A + I +I + + + I +S G+ + ++P Sbjct: 434 EFIGIFYGLKKENTIKIAQKILDTINAIEIPVKTSDVDDIVKIEMSIGVTYFSKSDRQP- 492 Query: 234 STIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S + RAD A+Y +K++GRN+ V F D+E+ Sbjct: 493 SDAVKRADDAMYESKETGRNK-VSFFDVED 521 >gi|307728234|ref|YP_003905458.1| diguanylate cyclase [Burkholderia sp. CCGE1003] gi|307582769|gb|ADN56167.1| diguanylate cyclase [Burkholderia sp. CCGE1003] Length = 503 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 26/210 (12%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS 124 L+ L L +I++ + L + G +L E + L+R D L+G+ N F +L S Sbjct: 289 LIGALDLTLIALAV-LFAQQMRGRLLAE-----EELRVLARTDGLTGVDNRRTFEHALES 342 Query: 125 -------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD---QLVVVFGTPMFVGR 174 + LS++ D+D FK ND +GH GD + ++ + V G M R Sbjct: 343 ECRRVQRHGGPLSLLLIDVDNFKGFNDLYGHSAGDDALITVARCIARNVQRSGDTM--AR 400 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIAERCHKEP 232 GGEEFA + + A LA +R +E + +S S H +T+S G+A E Sbjct: 401 YGGEEFAVLLPDTDQDGARALAETIRASVE--ALALSHVASSHHVLTVSIGVAT-MRGEA 457 Query: 233 IST---IIYRADQALYVAKKSGRNRVVCFS 259 ++ ++ ADQALY AK +GRNRV + Sbjct: 458 LTASRRLVDAADQALYAAKDAGRNRVFTYG 487 >gi|260577432|ref|ZP_05845396.1| diguanylate cyclase [Rhodobacter sp. SW2] gi|259020355|gb|EEW23687.1| diguanylate cyclase [Rhodobacter sp. SW2] Length = 551 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 7/161 (4%) Query: 102 QLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 Q +R D L+GL N + L +E +I+ D+D+FK ND +GH GD+V+ Sbjct: 360 QATR-DVLTGLFNRRYLMDRLHRRIERQADESFAIMSIDVDHFKAFNDAYGHEAGDEVLR 418 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 L + L P R+GGEEF ++ +A A LR + ++ + Sbjct: 419 VLGEMLSASCNAPEIACRMGGEEFILVLPNLAKDQAVERAEALRIAVNELCVHHAGNTLP 478 Query: 217 HITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256 I++S G+A S ++ +AD+ALY AK +GRN VV Sbjct: 479 PISVSVGVALYSGIGDASLDVLRQADEALYAAKSAGRNHVV 519 >gi|209695775|ref|YP_002263705.1| putative membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] gi|208009728|emb|CAQ80032.1| putative membrane associated GGDEF protein [Aliivibrio salmonicida LFI1238] Length = 260 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 11/172 (6%) Query: 94 FISYNR--ISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFG 147 +++Y+R + L+ D L+ L N ++ S+L + + K++++ D+D FKQ ND G Sbjct: 83 YMTYSRRKLRLLTEKDTLTTLNNRASIFNKIKSTLKTPHSKMALIMLDVDNFKQFNDEHG 142 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 HP GD + LS L P +GR+GGEEF S+ E + L N LR +E S Sbjct: 143 HPNGDLALKHLSIVLQKHLSFPHEIGRVGGEEFMIILKNLSKLECSRLINKLRIELEQST 202 Query: 208 INISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + IT S I E I I + D+ LY AK +GRN +V Sbjct: 203 FMTLDVKRLAITASFSWMYIEESM--TDIDQIYFVLDEGLYQAKANGRNCIV 252 >gi|163938551|ref|YP_001643435.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] gi|229165570|ref|ZP_04293346.1| Sensory box/GGDEF [Bacillus cereus AH621] gi|163860748|gb|ABY41807.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] gi|228617897|gb|EEK74946.1| Sensory box/GGDEF [Bacillus cereus AH621] Length = 567 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS--IVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ EK+ +++FD+D FK +ND G Sbjct: 133 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 192 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF + E LA + + Sbjct: 193 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTHDEMRQLATSVLSCFQAP- 251 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 252 -FMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|264677400|ref|YP_003277306.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262207912|gb|ACY32010.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 339 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 18/179 (10%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 S+ KEL + LS D L+ + N F +S E+ LS++ FD+D+FK Sbjct: 161 SLQKELEV-------LSFKDGLTSIANRRCFDTSFEQEWERTRSDGKPLSMLLFDVDFFK 213 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 Q ND +GH GDK + ++ L + G V R GGEEF + + A +A Sbjct: 214 QYNDLYGHIQGDKCLVDIAQTLSLALDGQRDLVARYGGEEFVVLLPEADAETAQKVAERC 273 Query: 200 RKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++I+ I + P + ++I AG + + ++ I D+ LY AK GR+R+ Sbjct: 274 QRLIQKQSIVHALSPHGRRVTMSIGAGTVQPAEHDRPASFIEAVDRQLYAAKNKGRHRI 332 >gi|192359424|ref|YP_001980711.1| putative GGDEF domain-containing protein [Cellvibrio japonicus Ueda107] gi|190685589|gb|ACE83267.1| putative GGDEF domain protein [Cellvibrio japonicus Ueda107] Length = 526 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 12/165 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 R +L+ D L+GL N A + L + + L+++ D+D FKQIND++GH G Sbjct: 350 RTRELAETDSLTGLTNRPAAEAILDQWLIQAAATSRGLAVMMIDLDRFKQINDSYGHDAG 409 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++++L + V RLGG+EF + + + ++I++ I Sbjct: 410 DQVLRVVANRLRKLVRDSDLVARLGGDEFLIVLKQTDNPD--VDKRIAQQILDAQAAPIE 467 Query: 212 SGPSI--HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 P + + IS GIA H + ++ ADQALY K+ G+N Sbjct: 468 IQPQVLETVGISIGIAHYPAHGDNPQSLRRHADQALYSVKRRGKN 512 >gi|189183991|ref|YP_001937776.1| response regulator PleD [Orientia tsutsugamushi str. Ikeda] gi|189180762|dbj|BAG40542.1| putative response regulator protein [Orientia tsutsugamushi str. Ikeda] Length = 489 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 11/171 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 NR++ L+ D L+ + N F I+ N+ L ++ D D+FK +ND +GH V Sbjct: 318 NRLN-LAAKDGLTNIFNRRYFDSHINQLINDAKDSNKSLFLIMIDFDHFKMVNDIYGHQV 376 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ + + R GGEEF +Q+A LAN ++ IE Sbjct: 377 GDEVLKASVKIIETNIRVTDLIARYGGEEFIITIYDDDIDQQKAIALANRIKIKIETHNF 436 Query: 209 NISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 IS+ + TIS GI E E + +I R D+ALY AK GRN+V Sbjct: 437 IISNLKLQLKQTISIGITEYDPPEDANALISRTDKALYNAKHYGRNQVCAL 487 >gi|78043307|ref|YP_359559.1| GGDEF domain-containing protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995422|gb|ABB14321.1| GGDEF domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 653 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 5/180 (2%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-LGSYNEKLSIVFFDIDYFKQIN 143 +SG ++K L++ N ++++S D L+ N + L + + S++F D+D FK+IN Sbjct: 475 MSGPLVK-LYLLKNYLAEISLRDPLTQAFNRRFLEDAILENRDCNYSLIFIDLDKFKEIN 533 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD V+ L+ ++ + V R+GG+E + + +AN + ++I Sbjct: 534 DTYGHNAGDLVLIKLTQKIRENLRSQDQVIRMGGDEILIYLPNTPIELTREIANRIMELI 593 Query: 204 ENSQINI---SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 Q + + + +++ S GI E ++ R D+ALY AK+ GRN++V +D Sbjct: 594 RKEQFTVMKDTKTVTFNVSASMGIGSCREGESFEEVLARVDKALYRAKELGRNQIVVAAD 653 >gi|50122071|ref|YP_051238.1| putative regulator [Pectobacterium atrosepticum SCRI1043] gi|49612597|emb|CAG76047.1| putative regulator [Pectobacterium atrosepticum SCRI1043] Length = 515 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 14/188 (7%) Query: 81 LLGYISGSILKELFISYNRISQ-LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132 L I +I+++ S N Q L+ D L+GL N F + + + ++++ Sbjct: 323 LKNQIDLTIVRDELTSVNHTLQTLALFDGLTGLANRRQFDIFLQQTLLRVAETRQCMALI 382 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191 D+D FK+ ND++GH GD+ + + + L + V R GGEEFA + +Q Sbjct: 383 MIDVDAFKKYNDHYGHVAGDECLRKIGNALSKMPKRKEDLVARYGGEEFAIIITDTDKQG 442 Query: 192 AAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYV 246 A LA + + +I ++ P +TISAG+ C P T +I AD ALY Sbjct: 443 ATTLAQRVLNSVREEKIAHEMTLFPEKIVTISAGVYVFCVDNPPPTAASVIDIADAALYR 502 Query: 247 AKKSGRNR 254 AK SG+NR Sbjct: 503 AKNSGKNR 510 >gi|299534226|ref|ZP_07047577.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298717873|gb|EFI58879.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 315 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 18/179 (10%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 S+ KEL + LS D L+ + N F +S E+ LS++ FD+D+FK Sbjct: 137 SLQKELEV-------LSFKDGLTSIANRRCFDTSFEQEWERTRSDGKPLSMLLFDVDFFK 189 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 Q ND +GH GDK + ++ L + G V R GGEEF + + A +A Sbjct: 190 QYNDLYGHIQGDKCLVDIAQTLSLALDGQRDLVARYGGEEFVVLLPEADAETAQKVAERC 249 Query: 200 RKIIENSQINISSGP---SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +++I+ I + P + ++I AG + + ++ I D+ LY AK GR+R+ Sbjct: 250 QRLIQKQSIVHALSPHGRRVTMSIGAGTVQPAEHDRPASFIEAVDRQLYAAKNKGRHRI 308 >gi|316932426|ref|YP_004107408.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315600140|gb|ADU42675.1| diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 502 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 17/172 (9%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGH 148 + ++ +L+ D L+GL N F +++ + N ++++ D D+FK ND FGH Sbjct: 326 AERQLEELAITDPLTGLTNRRKFDAAIDTEWRRAIRQNTPIALLMIDADHFKAYNDRFGH 385 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GD+++ ++ V + T G R GGEEFA G + A +A +R+ ++ Sbjct: 386 QAGDQMLVGIA---VCIADTVQRAGDCAARFGGEEFAVLLPGLTASAAEAVAETIRRKVQ 442 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I G ++ + +++ H+ ++ AD+ALY AK+ GRNR V Sbjct: 443 EWS-DIEGGVTVSVGVASTTPAAAHQ--WHDLVEAADRALYAAKELGRNRCV 491 >gi|54308566|ref|YP_129586.1| hypothetical protein PBPRA1373 [Photobacterium profundum SS9] gi|46912995|emb|CAG19784.1| hypothetical protein PBPRA1373 [Photobacterium profundum SS9] Length = 203 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 18/168 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEK-LSIVFFDIDYFKQINDNFGHPV 150 R+ + + +D L+G+ N + LG S N+K S++ FDID FK+IND +GH V Sbjct: 15 RLYRQAILDPLTGIYNRRMLLR-LGKKSMQECSQNDKPFSVLLFDIDKFKRINDTWGHSV 73 Query: 151 GDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GDKV+ AF+ + + T +F GR GGEEF A ++N + I Sbjct: 74 GDKVLTGFTAFVQGK---IRKTDLF-GRYGGEEFILFLPDCPSDTAIKISNRMLTAIRAL 129 Query: 207 QINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ I+ S+ IT GI+ + +++++ RAD ALY K SGR+ Sbjct: 130 KLPINIENQSLSITTCIGISTYSENDTLASMLERADLALYQCKHSGRD 177 >gi|254562232|ref|YP_003069327.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens DM4] gi|254269510|emb|CAX25476.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with GAF and two PAS/PAC sensor domains [Methylobacterium extorquens DM4] Length = 1003 Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPVGD 152 I ++R D L+GL N F +L G+ + S+V D+D FK +ND FGHP GD Sbjct: 576 IEHMARHDALTGLPNRRLFQETLAREIDGALRDGGSVVVLCCDLDRFKAVNDTFGHPAGD 635 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 ++ ++ +L V RLGG+EFA +Q +A R++I+ + + Sbjct: 636 ALLRVVAGRLRATLREGDVVARLGGDEFAIILPSRGKQRR--IAAFARRLIQAAGRPVDL 693 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 G + + +S G+A H + T+ AD ALY AK SGRN Sbjct: 694 GGRATTVGVSIGVAVWPKHGDNADTLFKNADIALYRAKDSGRN 736 >gi|167035266|ref|YP_001670497.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166861754|gb|ABZ00162.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] Length = 754 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 16/183 (8%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------NE-KLSIVFFDIDYFKQ 141 +L +L + + Q + D L+ L+N F NE +L+++F DID+FK+ Sbjct: 275 LLSQLDQARASLQQAAHYDALTNLVNRRGFNQVFAERLVEHQANENRLAVMFLDIDHFKR 334 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND+ GH GD+++ +++ + + V RLGG+EF +S EA LA ++ Sbjct: 335 INDSLGHDAGDELLKVIANHIKAATRSQDLVARLGGDEFCVVTSLNSRDEARHLA---QR 391 Query: 202 IIENSQINIS-SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257 I++ + I G + +T S G++ + ST ++ AD ALY +K +GRN + Sbjct: 392 IMQRMKDPIDLGGRRMVMTTSIGVS--IFPDDGSTAEELLKHADLALYQSKDNGRNSLNF 449 Query: 258 FSD 260 F+D Sbjct: 450 FND 452 >gi|189424029|ref|YP_001951206.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] gi|189420288|gb|ACD94686.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] Length = 300 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 12/176 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL + LS D L+G N + + +S++ DID+FK+IN Sbjct: 127 EELRKRNKELELLSHKDALTGAFNRRYLCHILNVELGRAARTDGMVSVLMLDIDHFKEIN 186 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKI 202 D FGH GD + ++ + R GGEEF +S++EA +A+ L +K+ Sbjct: 187 DRFGHQAGDLALKKVTAEATACLRDYDLFFRYGGEEFVVMLPDTSKREALKVAHRLCQKV 246 Query: 203 IENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256 + +IS P + IT+S G+A + + ++ ADQALY AK+SGR++V Sbjct: 247 RAIAFSHIS--PDLKITVSIGVAAYPDNDVCSVEELLAHADQALYQAKQSGRDQVA 300 >gi|13471907|ref|NP_103474.1| hypothetical protein mlr2027 [Mesorhizobium loti MAFF303099] gi|14022651|dbj|BAB49260.1| mlr2027 [Mesorhizobium loti MAFF303099] Length = 867 Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 EL ++ I + D L+GL N ++ G + + +++ D+D FKQIND GH Sbjct: 434 ELNLAKAHIEYAALHDSLTGLPNRRYLDELLAENGKPDRRTALLHLDLDRFKQINDTLGH 493 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD ++ S + G FV R+GG+EF + G + + LA+ +IIE+ + Sbjct: 494 AAGDAMLVHASKVIQANVGRDDFVARIGGDEFVVVSHGLDDDGLSALAH---RIIEDMRQ 550 Query: 209 NIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G +S GIA + + ++ AD ALY AK GRNR F++ Sbjct: 551 PVDYRGHPCRFGVSIGIAAN-NGVDVKQLLVNADLALYRAKSRGRNRYEFFNE 602 >gi|315123462|ref|YP_004065468.1| sensory box protein [Pseudoalteromonas sp. SM9913] gi|315017222|gb|ADT70559.1| sensory box protein [Pseudoalteromonas sp. SM9913] Length = 990 Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 25/218 (11%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI---DCLSGLLNHSAFI 119 Y + N+S++ ++ LG I ++ + + QLSRI D L+ L N Sbjct: 508 YAELLNISVLKDDNNVTFYLG-----IFTDITQAKRQQEQLSRIAHYDLLTNLPNRVLLA 562 Query: 120 SSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 L +N L++VF D+D FK +ND+ GH +GDK++ LS +L + Sbjct: 563 DRLSQTMLQCRRHNNSLAVVFLDLDGFKHVNDSHGHDIGDKLLIALSIRLKDALREGDSL 622 Query: 173 GRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 R+GG+EF A LGS +L L + +N I + +SA I + Sbjct: 623 ARIGGDEFVAVLTNLGSVADCVPVLERLLAAAAKPVTVN-----DIVLNVSASIGVTIYP 677 Query: 231 E---PISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 E ++ ADQA+Y+AK+ G+NR F + +T Sbjct: 678 EDNLDAKQLMRHADQAMYIAKQMGKNRYHLFDTSQGDT 715 >gi|158520342|ref|YP_001528212.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3] gi|158509168|gb|ABW66135.1| diguanylate cyclase [Desulfococcus oleovorans Hxd3] Length = 394 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 24/169 (14%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+GL + A L + +I D+D+FK+ ND +GH VGD+V+ ++ L Sbjct: 226 DELTGLPSRRALNEKLQALGRTYTIAMVDVDHFKRFNDRYGHDVGDEVLKKVAAALKRAG 285 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---------SSGPS-- 215 G R GGEEF G + + A R + S I S P Sbjct: 286 GNAY---RFGGEEFTLVFPGKALAQGKAAAEAARNAVSRSAFTIRSPARKKKDGSAPEKA 342 Query: 216 -------IHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255 + +T+S G+A+R H P +I AD+ALY AKK+GRNR Sbjct: 343 TPGKRKRVSVTVSIGLAQRSSRHTTP-DAVIKAADRALYRAKKNGRNRT 390 >gi|104782034|ref|YP_608532.1| diguanylate cyclase [Pseudomonas entomophila L48] gi|95111021|emb|CAK15741.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas entomophila L48] Length = 362 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 18/218 (8%) Query: 52 YIGLTPFYGLEYILVENLSLVIISITISL--LLGY----ISGSILKELFISYNRISQLSR 105 ++ L PF+ L+E ++ S + L L+ Y + + L +++ + Q + Sbjct: 147 WLMLNPFFHTRIALLELEGAMLFSYALCLSGLVTYSYLRLRQAKLHNFYLTKVLLEQ-AY 205 Query: 106 IDCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +D L+ + N +F++ ++ + DID FK++ND FGH +GD+V+ ++ Sbjct: 206 VDALTEIPNRRSFMAKAEKQLQQAGPGQFLAMIDIDNFKKVNDRFGHDIGDEVLKRVAGH 265 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 + + RLGGEEFA G +EQ A + + + + + + P +TIS Sbjct: 266 IKAAM-VGFEIARLGGEEFAIFFQGLNEQGA---EEQVGALCQRVREDAAEHP---VTIS 318 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G+ + ++ + RADQALY AK +G++R V + Sbjct: 319 IGLTRVDSGDTLTLALIRADQALYEAKHTGKDRFVVWD 356 >gi|91792311|ref|YP_561962.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91714313|gb|ABE54239.1| GGDEF domain [Shewanella denitrificans OS217] Length = 694 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 9/170 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGHPV 150 + +++L+++D L+ + N + +L N+ K+S++ D+D+FK IND FGH V Sbjct: 474 SELARLAQVDELTQVFNRRQLVLLGGQVLALAERNKTKVSVIMVDLDFFKSINDRFGHNV 533 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + +++ L + GRLGGEEFA + ++A A R I ++ Sbjct: 534 GDWALRRVAETLNALGRKSDVFGRLGGEEFAFVLSDCALEQALDFAELCRNEIATIDVSD 593 Query: 211 SSGP-SIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S P ++ +T S G+ E + ++ ADQALY AK S RN VV F Sbjct: 594 SLFPGALSLTASFGVTETGLSGYDLEGLLSDADQALYQAKDSQRNCVVKF 643 >gi|329295649|ref|ZP_08252985.1| diguanylate cyclase [Plautia stali symbiont] Length = 124 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 2/125 (1%) Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQ 190 +F D D FK INDN+GH GD+V+ ++ +L + V RLGG+EFA +SE Sbjct: 1 MFLDGDRFKSINDNWGHAAGDEVLKAIAARLSALAYQDDLVARLGGDEFAMLITSRTSEA 60 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 + L D+R I S I IS G I +++ G A H + + +I+ RAD +Y K Sbjct: 61 DLQQLTEDIRTAIAQS-IVISEGTQITTSVTIGYAWSQHGDSVVSILERADMHMYKNKGM 119 Query: 251 GRNRV 255 + RV Sbjct: 120 SKVRV 124 >gi|254410977|ref|ZP_05024755.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182332|gb|EDX77318.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 508 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 17/212 (8%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH 115 TP + ++ L+ ++ ++I++ + +++ + +L +ID L+G+ N Sbjct: 291 TPNRQWQTWEIDCLNQLVKQVSIAIQ----QSELYQKVKTDNQHLQKLVKIDSLTGIANR 346 Query: 116 SAFISSLGS------YN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 F L N LS++ DID+FK ND +GH VGD + +++ + Sbjct: 347 RRFDQVLAEELICSRRNLTPLSLILCDIDFFKAYNDTYGHWVGDNCLKEVAEAICQAAQR 406 Query: 169 PM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH--ITISAGIA 225 P V R GGEEF + A I+A +R ++ + + P IH +T+S GIA Sbjct: 407 PSDLVARYGGEEFVVILSNTDNPGAFIVAQKIRYQMDKLKRPHAKSP-IHPWVTLSLGIA 465 Query: 226 ERC--HKEPISTIIYRADQALYVAKKSGRNRV 255 H+ S ++ AD+ALY AK GR+R+ Sbjct: 466 TTTPSHQLSSSELVQLADRALYKAKALGRDRI 497 >gi|332295745|ref|YP_004437668.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thermodesulfobium narugense DSM 14796] gi|332178848|gb|AEE14537.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thermodesulfobium narugense DSM 14796] Length = 897 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 13/170 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+ N F L E+ S++ DID FK +NDN+GH +GDKV Sbjct: 732 ELSVKDSLTDSYNRRYFEKRLEEEIERTKRSNIPFSLIMLDIDDFKVVNDNYGHEIGDKV 791 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + + F+ R GGEEF ++ A LA +L+ + I P Sbjct: 792 LINIVKLVKNRIRKTDFIARWGGEEFMILLTNTNLHFAKKLALELKGGMYKLDI-----P 846 Query: 215 SIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 I +T S G+ + +++I+ R D+ +Y AK +G++ V+C D++N Sbjct: 847 EIEFVTASFGVTTYHESDTVNSIVKRVDKLMYAAKAAGKDCVMCDFDVQN 896 >gi|294339054|emb|CAZ87403.1| hypothetical protein; putative EAL, GGDEF and membrane domains [Thiomonas sp. 3As] Length = 799 Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 10/166 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVG 151 Y ++ D L+GL N AF+ L + ++ L++ D+D FK +ND GH VG Sbjct: 195 YKTYRTIAHRDDLTGLANRRAFMQKLSATLVKHPHQALAVGMIDLDRFKIVNDRLGHSVG 254 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210 D+++ + +L V + RLGG+EF G +S + +A+ L K +E + + Sbjct: 255 DQLLVAVGQRLRSVLRQTDVLARLGGDEFVVMFTGYTSLDQLRAVADRLVKSMEQ-EFTV 313 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254 S ++ I +S GI + +P+ T++ RAD A+Y +K+ GR + Sbjct: 314 QSH-ALQIGLSLGIVIQQQAKPVDALTLMRRADLAMYASKEGGRQQ 358 >gi|77918128|ref|YP_355943.1| GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380] gi|77544211|gb|ABA87773.1| FOG: GGDEF domain containing protein [Pelobacter carbinolicus DSM 2380] Length = 426 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 29/169 (17%) Query: 97 YNRISQLSRIDCL-----SGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 YNR L+R + L +G +++F+S ++ D D FK IND +GHPVG Sbjct: 255 YNRREVLARTEELLSQWRAGGDRNASFVS----------VLMVDFDNFKIINDTYGHPVG 304 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ L+ ++ +GR+GGEEF G + + R+I E + Sbjct: 305 DRVLQELAARIQSCLEPKDILGRMGGEEFLVVLPG-------VGVSACREIAERLCQAVC 357 Query: 212 SGP------SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 P I +IS G+A R H + +++ ADQ LYVAK SG+N Sbjct: 358 GTPFDPENYRISGSISVGMATMRAHGGSVDAMLHDADQGLYVAKNSGKN 406 >gi|83592321|ref|YP_426073.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170] gi|83575235|gb|ABC21786.1| Putative diguanylate cyclase (GGDEF domain) [Rhodospirillum rubrum ATCC 11170] Length = 508 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 27/211 (12%) Query: 70 SLVIISITISLLLGYISGSIL-----KELFISYNRISQLSRIDCLSGLLNHSAFISSL-- 122 ++V+ IT L LG + +L ++ ++ + +S+L+ D L+GL N L Sbjct: 292 AIVVGGITFVLCLGVGAVVVLLLREFRQRRLTESALSELAVTDGLTGLCNRRHLEEVLRV 351 Query: 123 -----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLG 176 + L+++ D+D+FK ND GH +GD V+ L+ + + P VG R G Sbjct: 352 ECARSARNQQPLALLMIDVDHFKAFNDRHGHRIGDGVLVDLAVIIRALLKRPADVGARYG 411 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI-----TISAGIAER--CH 229 GEEFA + LA LR + E + ++ P + T+S G+ R Sbjct: 412 GEEFAVILPDTD------LAGGLR-VAEAIRARMAGRPPVGQDLRAGTVSIGVVSRILTP 464 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ AD+ALY AK +GRNRVV +D Sbjct: 465 GYGVDDLVMDADKALYAAKGAGRNRVVPAAD 495 >gi|54309271|ref|YP_130291.1| hypothetical protein PBPRA2087 [Photobacterium profundum SS9] gi|46913703|emb|CAG20489.1| hypothetical protein PBPRA2087 [Photobacterium profundum SS9] Length = 1053 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 95/186 (51%), Gaps = 15/186 (8%) Query: 84 YIS-GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--D 135 YIS G + E + +++ +L+ D L+ L N + + + K S+V F D Sbjct: 597 YISTGKDITERVLFESKLHKLAHYDLLTELPNRLLLLQHIEQAITNAEEMKTSVVVFNID 656 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAI 194 +DYFK+IND+ GH VGDKV+ ++ ++ + RLGG+EFA +S Q A Sbjct: 657 LDYFKKINDSLGHDVGDKVLITIAKRITRSLRDEDVLARLGGDEFAILIQSDTSSQSIAT 716 Query: 195 LANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGR 252 LA +II N ++S S+ IT S GIA S ++ +D ALY AK GR Sbjct: 717 LA---ERIINNICASLSIEEKSLSITASMGIAVYPENSVDSDALLKNSDIALYHAKDQGR 773 Query: 253 NRVVCF 258 NR CF Sbjct: 774 NR-YCF 778 >gi|331015060|gb|EGH95116.1| GGDEF domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 424 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 198 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 247 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 248 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAYRYGG 307 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + E +R+ I N I N S P S+ + Sbjct: 308 EEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEASVSV 367 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 368 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 414 >gi|313682865|ref|YP_004060603.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Sulfuricurvum kujiense DSM 16994] gi|313155725|gb|ADR34403.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Sulfuricurvum kujiense DSM 16994] Length = 673 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 89/171 (52%), Gaps = 17/171 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHP 149 Y ++ +LS D L+GL N F L + K +++ D+D FK IND +GH Sbjct: 252 YEKLQELSDRDYLTGLYNRRKFEEFLSYEVKRSLRHRHKFTVLMIDLDNFKYINDTYGHA 311 Query: 150 VGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GD V+ ++ +FG+ + + R+GG+EFA + + + LR +E+ Sbjct: 312 SGDLVLK----EVTEIFGSKLRNADILARIGGDEFAVILPETPYENGYAVVEKLRASLES 367 Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 + I++ + +T S GIAE + E I +++ +D A+Y AK++G+N + Sbjct: 368 TPISLMFD-QVSLTASFGIAEYPEQGENIESLLTGSDLAMYKAKRAGKNTI 417 >gi|313673588|ref|YP_004051699.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672] gi|312940344|gb|ADR19536.1| diguanylate cyclase [Calditerrivibrio nitroreducens DSM 19672] Length = 332 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 8/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N I++LS D ++GLLN S F+ + Y + S++ D D K IND +GH Sbjct: 161 NLITELSITDEMTGLLNQSGFMKKIEEEFYRSQRYQKTFSVLMIDSDNLKLINDTYGHKY 220 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 G VI +++ + F R GG+EF + + A +A +RK E Sbjct: 221 GSIVIKSIAEVIKTNIRRTDFAARYGGDEFILCLVETDLDGALEVAERIRKQFELKSFFT 280 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254 ITIS G++ + + +I AD+A+Y +K SG+N+ Sbjct: 281 KDEKKFTITISIGVSNYPKSGDSLMDVIELADKAMYHSKNSGKNK 325 >gi|226307945|ref|YP_002767905.1| hypothetical protein RER_44580 [Rhodococcus erythropolis PR4] gi|226187062|dbj|BAH35166.1| hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 391 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 13/210 (6%) Query: 65 LVENLSLVIISITISLLLG---YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS 121 +VEN S V + + +++L+G Y+ + +F + S++D L+GLLN Sbjct: 183 VVENYSDVPVLVALTVLVGAAIYVIPFACQFIFSILGTDALNSQLDPLTGLLNRRGLADE 242 Query: 122 LG-----SY-NEKLSIVF-FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 + SY N L +V DID FK IND +GH VGD VI + +LV G + R Sbjct: 243 VRLLLERSYANSALVVVAAVDIDRFKTINDEYGHTVGDAVIEKVGSRLVECAGPAALIAR 302 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS 234 +GG+EF G ++ L +L++ + + S+ I AG E I+ Sbjct: 303 IGGDEFIIVDSG-DQRSVDRLEQELQRSTVTAPGHSEVALSVGIAKVAGPFESPDDALIA 361 Query: 235 --TIIYRADQALYVAKKSGRNRVVCFSDIE 262 T++ RAD+A+Y AK G + VV ++ + Sbjct: 362 YPTLLRRADRAMYAAKARGGHSVVLLTETD 391 >gi|119468948|ref|ZP_01611973.1| putative two-component response regulator with GGDEF domain [Alteromonadales bacterium TW-7] gi|119447600|gb|EAW28867.1| putative two-component response regulator with GGDEF domain [Alteromonadales bacterium TW-7] Length = 309 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 12/174 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVG 151 + QL+ ID L+ + N F S L N LS+ D+D FK +ND +GH G Sbjct: 133 EVQQLANIDGLTDIFNRGYFDSYLEQEWNRCKRLNMPLSLAIIDLDDFKLLNDTYGHQQG 192 Query: 152 DKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209 D+ + ++ L P + R GGEEFA +S ++A + N + + + I N Sbjct: 193 DESLKQVAAILEQYTKRPSDICARFGGEEFALIYGNTSSEQATTVINAIVEQLRRLNICN 252 Query: 210 ISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 S PS +T+S G+A C I ++I AD LY AK +G+N ++C +D+ Sbjct: 253 EHSLPSKTLTVSVGLASVIPCSGYTIESMIKEADDLLYKAKANGKN-LLCVADL 305 >gi|88705789|ref|ZP_01103498.1| GGDEF/EAL/PAS domain containing protein [Congregibacter litoralis KT71] gi|88699860|gb|EAQ96970.1| GGDEF/EAL/PAS domain containing protein [Congregibacter litoralis KT71] Length = 968 Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 20/169 (11%) Query: 99 RISQLSRIDCLSGLLNHSAFI----SSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVG 151 ++ Q + D L+GL N + F ++ S + +L ++V+ D+D FK+IND GH G Sbjct: 493 QLEQAAHYDALTGLPNRTLFFDRLDQAMASADRRLVELAVVYMDLDKFKEINDEHGHATG 552 Query: 152 DKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS 206 D+++ QL VF + + V RLGG+EF +S +E L + L I Sbjct: 553 DQLL----KQLSRVFSSQIRRSDTVARLGGDEFVFLICDFNSRKECIALLDRLMSTIHEP 608 Query: 207 QINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253 + + +G S+ ++ SAGIA + +++ +ADQA+Y AK GRN Sbjct: 609 R--VVAGISMQVSASAGIAFYSSAMDVGPDSLLRQADQAMYRAKAGGRN 655 >gi|312112576|ref|YP_003990892.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y4.1MC1] gi|311217677|gb|ADP76281.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y4.1MC1] Length = 842 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 20/160 (12%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N I L + +N +++I++ D+D FK IND+FGH +GD ++ ++ Sbjct: 419 DALTDLPNRRYLIEKLKNELKKAEEHNSRIAILYLDLDNFKNINDSFGHVMGDLLLKNVA 478 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKII--ENSQINISSGP 214 +L ++ F+ RLGG+EFA G+ E+ A L + I EN ++ I++ Sbjct: 479 QRLTMIH-PDCFIARLGGDEFAVLLSGNDFNIEEIACKTIQSLNQPIKLENKEVFITTSV 537 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I + G E T+I AD A+Y AKK G+N+ Sbjct: 538 GISVYPKDGDDE-------MTLIRHADMAMYDAKKKGKNQ 570 >gi|262195593|ref|YP_003266802.1| diguanylate cyclase [Haliangium ochraceum DSM 14365] gi|262078940|gb|ACY14909.1| diguanylate cyclase [Haliangium ochraceum DSM 14365] Length = 294 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 15/183 (8%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDI 136 ++SG ++ + + I +L+ +D L+ + N F+ SL Y LS++ FDI Sbjct: 116 FLSGQNIESAY--HEEIYRLTTVDGLTQIYNKRYFMESLEREMGRAQRYRRDLSLILFDI 173 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK +ND +GH GD V+ L+ ++ + R GGEEFA A Sbjct: 174 DHFKSVNDTYGHLAGDYVLKQLAVEIKRRIRREDILARYGGEEFAIILPELDVDSAKQFG 233 Query: 197 NDLRKIIENSQINISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRN 253 +R+I E+++ + I +TIS G+ + H + I AD+ LY AK GRN Sbjct: 234 EKIRRIAEDARFFFDN-TDIPVTISVGVTVLSPTVH--SAAEFIKLADEKLYEAKAEGRN 290 Query: 254 RVV 256 VV Sbjct: 291 CVV 293 >gi|207739719|ref|YP_002258112.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum IPO1609] gi|206593101|emb|CAQ60007.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum IPO1609] Length = 636 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 21/183 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYN-EKLSIVFFDIDYFKQINDNFGH 148 + RI L+ D L+GLLN A +L N ++S++F D+D FK IND GH Sbjct: 188 AQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNGTRVSVMFLDLDRFKNINDTLGH 247 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+++ ++ +L V RLGG+EF ++ R++ E Sbjct: 248 QFGDQLLREVAARLQACAREADTVARLGGDEFVVML-------ESLDGMGTRRVAERILA 300 Query: 209 NISS-----GPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261 I + G + + +S GIA H + +T++ +AD A+Y+AK+ GRN F SD+ Sbjct: 301 AIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQTFTSDL 360 Query: 262 ENN 264 ++ Sbjct: 361 DDR 363 >gi|192360753|ref|YP_001982450.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] gi|190686918|gb|ACE84596.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] Length = 595 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 17/179 (9%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 G + E S +I L+ D L+ L N F I S + +L+++F D+D F Sbjct: 137 GRDITERKQSEEQIQYLATHDSLTALPNRFMFSKLLAVAIESARRHQRQLAVLFIDLDRF 196 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILAN 197 K IND GH GD+++ ++++ T VGRLGG+EF L S +Q A + Sbjct: 197 KNINDTLGHDAGDQLLITMANRFRTCLRTSDIVGRLGGDEFVILLPELESHDQAARVAQK 256 Query: 198 DLRKIIENSQINISSGPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRN 253 L I+ ++ G +T S GI E E ++ AD A+Y AK+ G+N Sbjct: 257 ILSAAIQPLDVH---GQECRVTASIGICLYPEDAEDE--QALMKNADIAMYRAKEEGKN 310 >gi|332305295|ref|YP_004433146.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172624|gb|AEE21878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Glaciecola agarilytica 4H-3-7+YE-5] Length = 684 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 13/170 (7%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I Q + D L+ L N S + EK++++F D+D FK++ND+ GH VGD Sbjct: 254 IRQHAYFDSLTSLPNRFLSLDRLSQMLKEAQRSKEKVALLFLDLDDFKKVNDSLGHEVGD 313 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII-ENSQINI 210 K++ ++++L + VGRLGG+EF + + +A +A +L +I E +I+ Sbjct: 314 KLLKEVANKLTLALRKADTVGRLGGDEFIVLLRSLTGDSDAIDIAENLLEIFREPFEID- 372 Query: 211 SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 G + +T+S GI + S ++ AD A+Y +K SGRN F+ Sbjct: 373 --GKELVLTLSIGIVTYTKNGDSASDLLRHADAAMYQSKLSGRNTYSFFT 420 >gi|330873360|gb|EGH07509.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 397 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 23/211 (10%) Query: 68 NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120 N L + ++ + L+ Y S + LF R+ Q+ +R D L+ L N Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250 Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 + S E+ ++I+ DID+FK NDN+GHP GD + L ++ V Sbjct: 251 VMTSVWERARKTPANVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENDAVA 310 Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231 R GGEE G + Q A +A+ L+ + ++ + G S +T+S G+A C Sbjct: 311 FRFGGEEVLVLMNGDAGQ-AREMADVLQAAVAALKLPHPVLGESAFVTVSLGVA--CATA 367 Query: 232 PIST---IIYRADQALYVAKKSGRNRVVCFS 259 P +T +I AD ALY AK++GRN VCF+ Sbjct: 368 PQTTADHLISAADNALYAAKRAGRN-CVCFA 397 >gi|306845952|ref|ZP_07478519.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1] gi|306273587|gb|EFM55432.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1] Length = 236 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 23/228 (10%) Query: 39 IATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY- 97 IAT+I I+ G+ G++ V L +++ I++ LG S L+EL SY Sbjct: 18 IATIISIS----LSTGIRFAIGVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYR 73 Query: 98 ------NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGH 148 N +++++ +D L+GLLN +FI + N+ +F D+DY KQIND +GH Sbjct: 74 TAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 133 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIE 204 P GD I ++ L + + R+GG+EF A G+ ++L++ LR ++ Sbjct: 134 PAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLR 193 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 + N+ S +T+S G + ++ AD+ LY KKS R Sbjct: 194 EKRPNVGS----SLTVSVGRISCKTGQIFEEVLSIADEQLY-RKKSLR 236 >gi|269963914|ref|ZP_06178226.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831401|gb|EEZ85548.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 445 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 26/169 (15%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++L+ D L+G +N A + L ++ SI++ D+D FK++ND +GH +GD Sbjct: 275 AELAHRDALTGAMNRHAVQNWLEQQARQVRWGHDSFSILYMDLDKFKRVNDKYGHQMGDD 334 Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 ++ + V+V + + R GGEEF + ++A A +R+ N Sbjct: 335 ILR----EFVMVIASSIQPDDRLVRWGGEEFVVFCPNTDIEQAVKKAEVVRQ-------N 383 Query: 210 ISSGPSIH---ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +H +T S G+A+ E +S + RAD+ LY+AK++GRNR+ Sbjct: 384 VEKHLWVHGESLTCSIGVAQ-MQNERVSETMARADEVLYLAKRNGRNRI 431 >gi|257481934|ref|ZP_05635975.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008794|gb|EGH88850.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 397 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 23/211 (10%) Query: 68 NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120 N L + ++ + L+ Y S + LF R+ Q+ +R D L+ L N Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250 Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 + S E+ ++I+ DID+FK NDN+GHP GD + L ++ V Sbjct: 251 VMTSVWERARKTPADVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENGAVA 310 Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231 R GGEE G + Q A +A+ L+ + ++ + G S +T+S G+A C Sbjct: 311 FRFGGEEVLVLMNGDAGQ-AREMADVLQAAVAALKLPHPVLGESAFVTVSLGVA--CATA 367 Query: 232 PIST---IIYRADQALYVAKKSGRNRVVCFS 259 P +T +I AD ALY AK++GRN VCF+ Sbjct: 368 PQTTADHLISAADNALYAAKRAGRN-CVCFA 397 >gi|239623532|ref|ZP_04666563.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521563|gb|EEQ61429.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 465 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 14/174 (8%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +R+D L+GL N A + + E + ++F D+D FK IND GH GD + + Sbjct: 290 ARVDSLTGLYNRQAICREISRFLESPACSRAVLLFMDLDDFKNINDTMGHRSGDYALRCV 349 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSIH 217 +D VGR+GG+EF A G S+E+ A L + + + + G + Sbjct: 350 ADLFRHTLRATDMVGRVGGDEFVALLTGISAEKGGVECAKRLCEAVSSMEDPNMGGLKLS 409 Query: 218 ITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFS---DIENNTC 266 +I + C K+ T+ +AD A Y AK+ G+NR V ++ +++N C Sbjct: 410 CSIGGAV---CPKDGNDYDTLFVKADTAAYEAKRQGKNRYVFYTPGLELKNGYC 460 >gi|71280493|ref|YP_268488.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71146233|gb|AAZ26706.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 418 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 99/186 (53%), Gaps = 18/186 (9%) Query: 86 SGSILKELFISYNR----ISQLSRIDCLSGLLNHSAFIS-SLGSYNE-----KLSIVFFD 135 S ++ KEL + +++L+ D L+ + N F S N+ ++++F+D Sbjct: 226 SNNLTKELELKVEERTLLLNELAYTDALTKIANRRYFDEVSKAMINDVDPILPIALIFYD 285 Query: 136 IDYFKQINDNFGHPVGDK-VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 +DYFK +ND FGH +GD+ ++A ++ + F R+GG+EFA S+ E Sbjct: 286 LDYFKAVNDCFGHDIGDECLVAVVNAVSKALRQKSDFHARIGGDEFAIILKNVSKDE--- 342 Query: 195 LANDLRKIIENSQ-INISSGPSIHITISAG---IAERCHKEPISTIIYRADQALYVAKKS 250 L + +I++N + +NI + P++ +T S G I + I+ ++ ADQALY AK Sbjct: 343 LEKIIVRILDNIRLVNIPNEPTLSLTCSIGSSFITKFSEGTTINQVLKVADQALYQAKNQ 402 Query: 251 GRNRVV 256 GRN+ V Sbjct: 403 GRNQWV 408 >gi|320330295|gb|EFW86280.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|320330351|gb|EFW86331.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 367 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 23/211 (10%) Query: 68 NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120 N L + ++ + L+ Y S + LF R+ Q+ +R D L+ L N Sbjct: 161 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 220 Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 + S E+ ++I+ DID+FK NDN+GHP GD + L ++ V Sbjct: 221 VMTSVWERARKTPANVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENDAVA 280 Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231 R GGEE G + Q A +A+ L+ + ++ + G S +T+S G+A C Sbjct: 281 FRFGGEEVLVLMNGDAGQ-AREMADVLQAAVAALKLPHPVLGESAFVTVSLGVA--CATA 337 Query: 232 PIST---IIYRADQALYVAKKSGRNRVVCFS 259 P +T +I AD ALY AK++GRN VCF+ Sbjct: 338 PQTTADHLISAADNALYAAKRAGRN-CVCFA 367 >gi|296101147|ref|YP_003611293.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055606|gb|ADF60344.1| diguanylate cyclase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 325 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 7/183 (3%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQ 141 + +L L ++ LS +D L+GL N S L + N + ++ DID+FK Sbjct: 142 AQELLSRLLEERETLTDLSMMDPLTGLYNRRGLQSRLENLPAVENGEHFVLLMDIDHFKA 201 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND++GH +GD+ + +S + + V R GGEEF S + A A +R+ Sbjct: 202 YNDHYGHMMGDQALIRVSAAIRDAVRSRDIVARFGGEEFMVLLTNISLEHARQTAERIRQ 261 Query: 202 IIENSQIN--ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + +I + + ++TIS GIA E + +AD+ALY AK GRN ++ Sbjct: 262 KVYDLKIPHMFNERVATNVTISIGIAI-FENEDAEGALEKADKALYEAKHLGRNNILLSE 320 Query: 260 DIE 262 +++ Sbjct: 321 ELQ 323 >gi|238782711|ref|ZP_04626741.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970] gi|238716371|gb|EEQ08353.1| Diguanylate cyclase [Yersinia bercovieri ATCC 43970] Length = 400 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%) Query: 107 DCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N + F L ++ +++F D D FK+IND++GH GD V+ ++D Sbjct: 228 DSLTGLANRAFFEGRLSRTLNDCKSDQHAAVLFLDGDRFKEINDSYGHAAGDVVLTTIAD 287 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIE--NSQINISSGPSIH 217 ++ + V RLGG+EFA E + I+AN+ IIE + I ++ G I Sbjct: 288 RIRALLRETDLVARLGGDEFAVLLAPIHETDDVLIIANN---IIESMSQPIILADGIEIT 344 Query: 218 ITISAGIA-ERCHKEPISTIIYRADQALYVAKK----SGRNRVVCFSDI 261 ++S GIA H + ++ RAD+A+Y AKK SG + SDI Sbjct: 345 TSLSIGIAIYPDHAQTPEELLQRADEAMYHAKKNFQSSGGRAIAQPSDI 393 >gi|28867734|ref|NP_790353.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28850969|gb|AAO54048.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 431 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 205 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 254 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 255 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAYRYGG 314 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + E +R+ I N I N S P S+ + Sbjct: 315 EEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEASVSV 374 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 375 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 421 >gi|90426096|ref|YP_534466.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] gi|90108110|gb|ABD90147.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] Length = 915 Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 16/168 (9%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHP 149 S RI+ L+ D L+ L N ++F + E+ L++++ DID FK IND+ GHP Sbjct: 471 SEERIAYLAHYDELTSLPNRTSFRERIEDEFERVARGGTLALLYIDIDEFKAINDSLGHP 530 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QE----AAILANDLRKIIE 204 VGD ++ ++ +L FV RLGG+EFA + QE A L +R E Sbjct: 531 VGDALLKIVAARLKACLRETDFVARLGGDEFAILQTAPRDVQEVTELVARLFETIRAPCE 590 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 IS+ SI I ++ H +I AD A+Y AK GR Sbjct: 591 CLGHQISTDASIGIALAPP-----HGTDTDQLIKNADLAMYQAKADGR 633 >gi|327188457|gb|EGE55671.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 709 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 23/176 (13%) Query: 98 NRISQLSRI-------DCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNF 146 R+ QL++ D LSGLLN +S L ++ S + D+D FK +ND + Sbjct: 281 RRLRQLAQAALYEAGHDSLSGLLNRQGLLSLLEELDDTASSPPRLYLVDLDGFKAVNDAW 340 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKII 203 GH VGD +I +S L+V + RLGG+EFA +G + E E AILA Sbjct: 341 GHAVGDDLIRLVSKALMVCHPEVVAAARLGGDEFALVHVGPATCEEMERAILA----LFA 396 Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 E +I+ G +I + S G A R EP+ ++ RAD ALY AK +GR + + + Sbjct: 397 EPFKID---GRTIEVGASIGAATRDGDIEPLE-LLRRADMALYRAKANGRGQAIEY 448 >gi|315499329|ref|YP_004088133.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Asticcacaulis excentricus CB 48] gi|315417341|gb|ADU13982.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Asticcacaulis excentricus CB 48] Length = 622 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 16/181 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQIN 143 + E ++ I +++ D L+ L N + F L +I+ D+D FK +N Sbjct: 182 ITESHLARATIERMANFDALTELANRNLFQKRLADLVARASARSMAAILSLDLDRFKAVN 241 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILAND 198 D +GH VGD ++A ++ +LV V RLGG+EFA +A + Q A L + Sbjct: 242 DLYGHGVGDALLAKVARRLVDVLRPGDLAARLGGDEFAVLLEKVSAHHDAHQVAKRLVSH 301 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 L E + I G S+ I + H PI ++ ADQALY AK+SGRN + + Sbjct: 302 LSAPYEIDGLEIVIGASVGIE----FIDDPHAAPID-LMRHADQALYAAKRSGRNDIAVY 356 Query: 259 S 259 Sbjct: 357 D 357 >gi|260902134|ref|ZP_05910529.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|308109945|gb|EFO47485.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] Length = 652 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N S F + G ++ ++++ D+D FK+IND +GH G Sbjct: 479 RLEYLAHHDALTGLANRSKFHLELEDLVQRSGYQRDEFAVLYLDLDGFKEINDTYGHDAG 538 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK----IIENSQ 207 D+V+ ++D+L + RL G+EF ++++ +A L + IE Sbjct: 539 DEVLKRVADRLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQLLESICAPIEYKG 598 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + G SI + + G+ ER + I+ AD A+Y AKK+G+ + + Sbjct: 599 NELKVGVSIGVKL-VGVNER----DATRILKSADTAMYQAKKAGKGQAILM 644 >gi|261405817|ref|YP_003242058.1| diguanylate cyclase [Paenibacillus sp. Y412MC10] gi|261282280|gb|ACX64251.1| diguanylate cyclase [Paenibacillus sp. Y412MC10] Length = 529 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 6/179 (3%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDY 138 L I G+ + + + Q + D L+GL N L S++ E +++ DID+ Sbjct: 349 LNRIMGAAAETMAKQTQSLQQEAITDPLTGLSNRRELERCLESWDALGEPYAVILLDIDH 408 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FK IND +GH GD+++ ++ +V R GGEEF S A +A Sbjct: 409 FKAINDTYGHQTGDQILKLVAAVMVHCAPADAVCSRFGGEEFVILLRERSLDTAYRMAER 468 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +R+ I S S ++ I +S ++E + AD ALY AK GRNR V Sbjct: 469 IRRAILVSPTPYSGTLTVSIGVSLYPEHGGNRE---DVFQAADMALYRAKGEGRNRTVA 524 >gi|148284174|ref|YP_001248264.1| response regulator PleD [Orientia tsutsugamushi str. Boryong] gi|146739613|emb|CAM79396.1| PleD-like response regulator, receivor domain/GGDEF domain [Orientia tsutsugamushi str. Boryong] Length = 489 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 11/168 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 NR++ L+ D L+ + N F I+ N+ L ++ D D+FK +ND +GH V Sbjct: 318 NRLN-LAAKDGLTNIFNRRYFDSHINQLINDAKDSNKSLFLIMIDFDHFKMVNDIYGHQV 376 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ + + R GGEEF +Q+A LAN ++ IE Sbjct: 377 GDEVLKASVKIIETNIRVTDLIARYGGEEFIITIYDDDIDQQKAIALANRIKIKIETHNF 436 Query: 209 NISS-GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS+ + TIS GI E E + +I R D+ALY AK GRN+V Sbjct: 437 IISNLKLQLKQTISIGITEYDPPEDANALISRTDKALYNAKHYGRNQV 484 >gi|126740131|ref|ZP_01755821.1| diguanylate cyclase, putative [Roseobacter sp. SK209-2-6] gi|126718950|gb|EBA15662.1| diguanylate cyclase, putative [Roseobacter sp. SK209-2-6] Length = 598 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 8/166 (4%) Query: 98 NRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +++ S D L+GL N FI+S + LS+V D+D+FK+ NDN GH Sbjct: 401 DQLQDQSVRDPLTGLFNRRHMNDSLRKFINSSQHSGKTLSLVAVDVDHFKKFNDNHGHDA 460 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ + + R GGEEF G S ++ A LR+ IE + Sbjct: 461 GDMVLRAVGSVMEQTCEGDQIACRPGGEEFTLILPGLSREDVMTKAELLRQSIEAIVVRY 520 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255 ITIS G+A + + R AD+ALY AK GRN++ Sbjct: 521 GDKSLPRITISLGVAHYPANGAMPQELLRSADEALYEAKAKGRNQI 566 >gi|186474063|ref|YP_001861405.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] gi|184196395|gb|ACC74359.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] Length = 666 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 17/185 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDY 138 SG+ + + + R+S+L+ D L+GL N +A I+S N + I+F D+D Sbjct: 219 SGTDITKERNAQERLSELANTDSLTGLPNRNAIHDKTRAAIASAAPGN-AVGILFLDLDN 277 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAI 194 FK++ND++GH GD++I +S + + RLGG+EF A + S E A Sbjct: 278 FKKVNDHYGHVFGDRLIQDVSSAVRECLDGADTLARLGGDEFIVLSPVATVASMEAMAQR 337 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + LR + + +G SI I + E H + + +I AD A+YVAK G+ Sbjct: 338 ILERLRMPFSLGLVEVYTGCSIGIAM---FPE--HGDSLEALIRAADTAMYVAKDDGKRT 392 Query: 255 VVCFS 259 FS Sbjct: 393 YRVFS 397 >gi|154245372|ref|YP_001416330.1| diguanylate cyclase [Xanthobacter autotrophicus Py2] gi|154159457|gb|ABS66673.1| diguanylate cyclase [Xanthobacter autotrophicus Py2] Length = 424 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 13/167 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGH 148 Y + Q SR D L+ +L H + LG + +S++ D+D FK +ND GH Sbjct: 248 YEDLKQESRRDPLTNVL-HRGQLEPLGRDLLAVARTTGRPVSLLLIDVDDFKDVNDQLGH 306 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 P GD+V+ L+ L V R GG+EFA A G A LA L + + + Sbjct: 307 PTGDEVLRRLARGLTESLRQADHVVRYGGDEFAVFAPGVGNAGALSLAAQLGRRV--GAM 364 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254 + G + T+S GIA ++ ++ AD+ LY AK +GRNR Sbjct: 365 TLPPGVARQ-TLSIGIASAPEDGSTLTELLDAADKRLYAAKAAGRNR 410 >gi|260596360|ref|YP_003208931.1| hypothetical protein CTU_05680 [Cronobacter turicensis z3032] gi|260215537|emb|CBA27720.1| hypothetical protein CTU_05680 [Cronobacter turicensis z3032] Length = 595 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 17/171 (9%) Query: 98 NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + +++ + D L+GL N A IS + +S + DIDYFK +ND +GH Sbjct: 421 DELTEKAMFDSLTGLRNRYHLEDALHACISQAEATGSPVSCLMIDIDYFKALNDQYGHDA 480 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ + V G V R GGEEF G ++ +A LA R + + ++++ Sbjct: 481 GDAVLKDVARTIRTVPGDTAQVFRYGGEEFLVLLPGMAQAQAHALAT--RMLTQVGELSL 538 Query: 211 SS-----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 GP +++S G+A +++ AD ALY+AK+ GR+R+V Sbjct: 539 RYNGQELGP---VSVSIGLATWPDHARRESLVKNADIALYLAKEMGRSRIV 586 >gi|218708990|ref|YP_002416611.1| sensory box/GGDEF family protein [Vibrio splendidus LGP32] gi|218322009|emb|CAV18043.1| sensory box/GGDEF family protein [Vibrio splendidus LGP32] Length = 827 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 13/172 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 +S L+ D L+GL N +A S E K++++F D+D FK IND GH G Sbjct: 389 ELSYLAHHDSLTGLYNRTALKESFAVIQERNIQNTTKIAVLFIDLDDFKNINDAHGHAYG 448 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209 D+++ ++ L + R GG+EF A L ++E IL N +++ IE S N Sbjct: 449 DQLLKNIAQTLQHLTEPNEMYFRFGGDEFIAIIDNLPTAESLTPIL-NKIKQAIERS-YN 506 Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I G S+ I S G++ H + I +I +AD ALY AK++ + + F++ Sbjct: 507 I-KGESLSIKTSIGVSLSPDHADNIEMLISKADMALYFAKRTSKGIIQLFNE 557 >gi|153206889|ref|ZP_01945707.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate phosphodiesterase (EAL) domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|120576962|gb|EAX33586.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate phosphodiesterase (EAL) domain protein [Coxiella burnetii 'MSU Goat Q177'] Length = 432 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 13/158 (8%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N FI L S + KLS++F D+D FK IND GH +GD+V+ +S Sbjct: 5 DQLTSLPNRREFIHRLNEEIGKPKSVDSKLSLLFLDLDNFKDINDALGHHMGDRVLVHVS 64 Query: 160 DQLVVVFGTPM--FVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINISSGPSI 216 D+L + +P+ F+G LGG+EF +++A + A + S I + + Sbjct: 65 DRLRKLDLSPLNYFLGHLGGDEFVILLKDLQQDKDATLCAKKISNAFSES-FKIKNF-LL 122 Query: 217 HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ S GI + K T++ +AD A+Y AKK GRN Sbjct: 123 YVNFSIGITIDFYSKTDSETLLKKADMAMYQAKKKGRN 160 >gi|189424661|ref|YP_001951838.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] gi|189420920|gb|ACD95318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] Length = 805 Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 9/179 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQI 142 + E ++ + +L+ D L+GL N L N + +++F D+D FK I Sbjct: 351 ITERNLAQRELIKLAHHDVLTGLPNRILLHDRLQQARAFAHRMNSRFALLFLDMDRFKII 410 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH VGD ++ ++ +L F V R+GG+EF L +++ ND + + Sbjct: 411 NDTLGHAVGDDLLRMIAQRLKACFRETDTVARIGGDEFVVLMLNVTDRTDICTLND-KLL 469 Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 E +Q + G + +T S G+ E + ++ +AD A+Y AK GRN + ++D Sbjct: 470 QELAQPFMIRGHELFVTTSGGVCTYPDDEDDVEIMMQKADIAMYHAKALGRNNIQFYND 528 >gi|150017708|ref|YP_001309962.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Clostridium beijerinckii NCIMB 8052] gi|149904173|gb|ABR35006.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Clostridium beijerinckii NCIMB 8052] Length = 792 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 16/172 (9%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDN 145 +K+ ++ +I D L+ + N + + L + ++K +I+F D+D FK INDN Sbjct: 358 IKDKILAEEKIRHYVYYDALTEIPNRKMMLENINELLKNKDKKFAILFIDLDDFKNINDN 417 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------AAILANDL 199 FGH VGDKV+ ++ L G + R+GG+EF L + E + A + +L Sbjct: 418 FGHQVGDKVLKKVASTLKDSIGPQDIISRIGGDEF-IIILKNVESDIYIKEIALRIQKEL 476 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 +K I ++ ++ G SI I+I H E T+I AD A+Y KK+G Sbjct: 477 KKPITYNEESLILGASIGISIFQE-----HGEDSDTLINNADLAMYEVKKNG 523 >gi|323528337|ref|YP_004230489.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001] gi|323385339|gb|ADX57429.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1001] Length = 922 Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 11/178 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQIND 144 S L EL S +R+ + +R D L+ L N A I + + +++F D+D+FK IND Sbjct: 473 SDLTELVDSRDRLVRQARRDALTELPNRVALRELIKEAIATRREFALLFMDLDHFKDIND 532 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH GD+++ ++ +L+ G R GG+EF ++ S QE L+ L +I + Sbjct: 533 SLGHAAGDRLLREVARRLLAAIGNDGTATRYGGDEF--VSMLDSPQENGRLSALLGRIGQ 590 Query: 205 NSQINIS-SGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCF 258 + + + + +S GIA C+ T++ AD A+Y AK GRNRV F Sbjct: 591 AFEHPVQIDDVQLRVQLSTGIA--CYPADGLDADTLLKHADLAMYDAKAHGRNRVERF 646 >gi|296134546|ref|YP_003641788.1| 7TM domain sensor diguanylate cyclase [Thiomonas intermedia K12] gi|295794668|gb|ADG29458.1| 7TM domain sensor diguanylate cyclase [Thiomonas intermedia K12] Length = 591 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 14/206 (6%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL 129 +L + + ++L+L Y + +L R+ L D L+GLLN + S ++ Sbjct: 375 ALQWVLVFLALVLTYGLSVRVAQLRERATRLQDLLLKDPLTGLLNRNGLFDSGQRQLDRT 434 Query: 130 -------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 ++++ D+D K+IND FGH GD +I S +L FG RLGG+EFA Sbjct: 435 QDSQAFAAVLWLDLDGLKRINDQFGHAAGDALIQATSARLREAFGPDAVCARLGGDEFAV 494 Query: 183 AALGSSEQEAAILANDL-RKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYR 239 + LA DL R +E + + SG + S G+A H + + ++ Sbjct: 495 VL---PNLPSPRLAEDLARHALERLRAPYALSGREFRASGSIGVALYPSHAQTLEELLRL 551 Query: 240 ADQALYVAKKSGRNR-VVCFSDIENN 264 AD A+Y AK GR+ VV SD+E + Sbjct: 552 ADVAMYRAKALGRDTYVVWESDMEAD 577 >gi|167746321|ref|ZP_02418448.1| hypothetical protein ANACAC_01030 [Anaerostipes caccae DSM 14662] gi|167654314|gb|EDR98443.1| hypothetical protein ANACAC_01030 [Anaerostipes caccae DSM 14662] Length = 476 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 16/154 (10%) Query: 107 DCLSGLLNHSAFISSLGS---YNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G++N F L N+K FF D+D FK+IND +GH GD+V+ ++ L Sbjct: 329 DVLTGVINRKYFQKLLEKDLKRNKKYRACFFLDVDDFKRINDTYGHQKGDEVLTAVARHL 388 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILANDLRKIIENSQINISSGPSIHITI 220 V R GG+EF G +E+E I LR++ +H+ I Sbjct: 389 EKNLREKDVVSRYGGDEFTCLIYGITEKEKIREIAGRILREVT----------GKVHVNI 438 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 S GI + II RAD ALY AK G+N+ Sbjct: 439 SMGITLIQDNDSYEQIIERADGALYEAKVRGKNQ 472 >gi|126725726|ref|ZP_01741568.1| sensory box/GGDEF domain/EAL domain protein [Rhodobacterales bacterium HTCC2150] gi|126704930|gb|EBA04021.1| sensory box/GGDEF domain/EAL domain protein [Rhodobacterales bacterium HTCC2150] Length = 837 Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 4/167 (2%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS--SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 N++ L D L+GL + F S G + + FD+D+FK +ND++GH GD ++ Sbjct: 389 NQLQMLVNQDELTGLYSRRGFKDRYSDGMRKKTAGVYIFDLDHFKSVNDSYGHEAGDALL 448 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + + + T RLGGEEFA +EA + LR +E + + + P Sbjct: 449 SAMGQTMKRLTETNGCAARLGGEEFAIIRPWQGWEEAKEFGDALRLALEQTVVVRGARP- 507 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 I T S GIA E +S + AD AKK GRN +VC S+ E Sbjct: 508 ISRTASIGIAMLPVSEALSDAMRLADDFAREAKKRGRN-MVCASEEE 553 >gi|119478352|ref|ZP_01618360.1| sensory transduction protein kinase [marine gamma proteobacterium HTCC2143] gi|119448561|gb|EAW29807.1| sensory transduction protein kinase [marine gamma proteobacterium HTCC2143] Length = 413 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 26/180 (14%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 +++ D L+GLL A L + +I DID+FK+ ND GH VGD V+ +++ Sbjct: 234 EMAYQDELTGLLGRRALNEKLSGLGNRYAIAMIDIDHFKKFNDTHGHDVGDDVLKVVANH 293 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210 + G + R GGEEF G S + +R+ I + +I + Sbjct: 294 IAETTGGGIPY-RYGGEEFCVVFPGKSLKPCIPHLEAVREAIGSHRITLRDRKNRPKSAQ 352 Query: 211 -------------SSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVV 256 G ++ +TIS G+AER + ++ AD+ALY AK++GRN V Sbjct: 353 TGAQKRAGTRTKARQGKTVSVTISIGVAERTDVVDMPDQVMKNADKALYKAKQNGRNCTV 412 >gi|119470965|ref|ZP_01613549.1| GGDEF domain protein [Alteromonadales bacterium TW-7] gi|119445987|gb|EAW27267.1| GGDEF domain protein [Alteromonadales bacterium TW-7] Length = 386 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 11/167 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHP 149 + +L+ D L+ +N F +G + +S++++DID FK IND +GH Sbjct: 215 QEMQKLATTDMLTKCINRRGFYE-IGEQKLQTHLNCLQHVSLIYWDIDSFKNINDEYGHA 273 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ + ++ R+GGEEF SEQ+ A LR + + I Sbjct: 274 GGDEVLIQATKRIRACLNKDDIFARIGGEEFVILIARDSEQKTQQFAETLRTQLCSRPIE 333 Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++ I +T S G+ + I I AD+ALYVAK G+N+V Sbjct: 334 YNT-QQIEVTASFGVVIIKSANTLIDKAIDLADKALYVAKHEGKNKV 379 >gi|116331560|ref|YP_801278.1| two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125249|gb|ABJ76520.1| two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 409 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 11/167 (6%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I ++S++D L+ L N F+ Y L+++ D+DY K+IND++GH GD Sbjct: 223 IEKISKVDELTKLYNRRYLIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGD 282 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--I 210 + +SD + R+GG+EF + + L LR + +++ Sbjct: 283 LALRTISDVMKQRVRATDICSRIGGDEFCILLDAIKKDDLVQLCEKLRMEVAEKELSYRT 342 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 SG + I++S G E S I + D ALY +KK GRNRV Sbjct: 343 PSGDPVKISVSIGACILSPMEEFSFDDIYHSIDSALYESKKKGRNRV 389 >gi|326795280|ref|YP_004313100.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea MMB-1] gi|326546044|gb|ADZ91264.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea MMB-1] Length = 664 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 15/190 (7%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDID 137 +S + + EL + R Q++ D L+ L N + + LSI F D+D Sbjct: 221 VSATDVSELKAAEARAHQIAYTDALTKLPNRRSLTRIFERVVKQASQKGRLLSIQFLDLD 280 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK IND GH GDKV+ ++ +L + + RLGG+EF + + EQ AI + Sbjct: 281 EFKAINDTLGHKQGDKVLIEIAHRLRSMVKVDDEIVRLGGDEF-LLFIQADEQSDAIRLS 339 Query: 198 DLRKIIENSQINIS-SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 D +++ N I+ +I IT S GIA E+ + I T++ AD A+Y AK +GRN+ Sbjct: 340 D--EVLSNLSHPITLEDANIKITPSIGIAFYEK-EGDTIDTLMQCADIAMYCAKSAGRNQ 396 Query: 255 VVCF-SDIEN 263 F SD+++ Sbjct: 397 HCVFKSDMKS 406 >gi|324329298|gb|ADY24558.1| hypothetical protein YBT020_26680 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 892 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 13/177 (7%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSANDVAVMFLDLDRFKKINDR 512 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 513 LGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILTIL- 571 Query: 205 NSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 572 NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 626 >gi|320325957|gb|EFW82016.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] Length = 397 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 23/211 (10%) Query: 68 NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120 N L + ++ + L+ Y S + LF R+ Q+ +R D L+ L N Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250 Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 + S E+ ++I+ DID+FK NDN+GHP GD + L ++ V Sbjct: 251 VMTSVWERARKTPANVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENDAVA 310 Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKE 231 R GGEE G + Q A +A+ L+ + ++ + G S +T+S G+A C Sbjct: 311 FRFGGEEVLVLMNGDAGQ-AREMADVLQAAVAALKLPHPVLGESAFVTVSLGVA--CATA 367 Query: 232 PIST---IIYRADQALYVAKKSGRNRVVCFS 259 P +T +I AD ALY AK++GRN VCF+ Sbjct: 368 PQTTADHLISAADNALYAAKRAGRN-CVCFA 397 >gi|295093455|emb|CBK82546.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain/uncharacterized domain HDIG [Coprococcus sp. ART55/1] Length = 1039 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 7/191 (3%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---- 125 +VI+ ++ + L ++ + + + R D L+GLLNH+AF S + Sbjct: 844 EIVIVDVSSTYALKMLTDAEQNKADVRLRNWENTYRTDPLTGLLNHAAFRSDMEQRLLEC 903 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 ++ D+D FKQ ND +GH GDK + ++ L + R+GG+EFAA Sbjct: 904 THTAVMIMMDVDRFKQYNDTYGHHNGDKFLVLVAQTLQAALRGDDYACRMGGDEFAAMLF 963 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQAL 244 + ++ ++I + + + + I++ A IA + + + AD AL Sbjct: 964 FNKSVSDDVIRERAQQIFDKVNLTVKATEGGTGISMGAVIART--ELTFNEMYEEADNAL 1021 Query: 245 YVAKKSGRNRV 255 Y K+SGR R+ Sbjct: 1022 YDVKESGRGRI 1032 >gi|260771158|ref|ZP_05880085.1| C-di-GMP phosphodiesterase A-related protein [Vibrio furnissii CIP 102972] gi|260613755|gb|EEX38947.1| C-di-GMP phosphodiesterase A-related protein [Vibrio furnissii CIP 102972] gi|315179236|gb|ADT86150.1| GGDEF domain protein [Vibrio furnissii NCTC 11218] Length = 685 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 24/187 (12%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFF-DIDYFK 140 ++ E ++ +++QL+ D L+GL N S + L +++ ++F+ D+D FK Sbjct: 226 TLWHERELAEAKLNQLAYYDTLTGLANRSLLLQMLSKSIDLAQHDQHSGVLFYLDLDRFK 285 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGS------SEQEA 192 IND+ GH +GDK+I ++ +L R+GG+EF AL S ++Q Sbjct: 286 TINDSLGHTIGDKLIKAIATRLQAWAKQDYIAARIGGDEFVVLIPALDSERVENVAKQLL 345 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 A+++N I++ Q+ S I + SAGI ++ +AD ALY AK SGR Sbjct: 346 ALISNPYS--IDDHQLYCSVSIGISMFPSAGITN-------IDVLRQADTALYRAKVSGR 396 Query: 253 NRVVCFS 259 N+ V + Sbjct: 397 NKYVFYE 403 >gi|239996737|ref|ZP_04717261.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Alteromonas macleodii ATCC 27126] Length = 450 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 13/184 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 EL + +++ +L+ D L+ + N AF+ + + I D+D+FK IND Sbjct: 245 ELRSANHKLEKLAYYDALTNIPNRRAFLDAFAKSLNFAKRNGHAMLIGIADVDHFKAIND 304 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK--- 201 ++GH GD V+ ++ + F +GR+GGEEFA + +S L + R+ Sbjct: 305 SYGHGFGDDVLTIVAQTMQQFFRQEDAIGRIGGEEFAFCMVLTSPVSPRQLLDRFREKVS 364 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV--VCFS 259 I+ + + G + +++ A + I ++ AD+ALY AK GRN + C+ Sbjct: 365 ILHETHPPL-KGRQVTLSLGAVYVSDLKEVSIKQLLCDADEALYRAKNKGRNTIECECYD 423 Query: 260 DIEN 263 DI+N Sbjct: 424 DIDN 427 >gi|149186853|ref|ZP_01865163.1| hypothetical protein ED21_25482 [Erythrobacter sp. SD-21] gi|148829520|gb|EDL47961.1| hypothetical protein ED21_25482 [Erythrobacter sp. SD-21] Length = 561 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 28/250 (11%) Query: 38 FIATVIFIANIFLFYIGL---------TPFYGLEYILVENLSLVIISI-TISLLLGYISG 87 F A V+F+A + G+ P L L+ N++L+++ L G I Sbjct: 29 FAAIVLFVATAGMVLPGIVASISHGGSPPDVVLTNALLLNIALIMLGWHRYKGLTGEIEA 88 Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFK 140 E +L+ D L+G LN + + L N L+ + D+D FK Sbjct: 89 HRRSE-----REARRLADYDDLTGCLNRRSLAAELEAMLAKGAGKNRALAAIAIDLDNFK 143 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 Q+ND GH VGD V+ +++ + + RLGG+EF ++ + R Sbjct: 144 QVNDLNGHAVGDAVLRTTAERFRHILPEGASLARLGGDEFVCVLRYDLDRPERVDMLATR 203 Query: 201 KIIENSQINISSGPSIHITISAGIAERCH------KEPISTIIYRADQALYVAKKSGRNR 254 + + ++ + + ++ ITIS GIA H + P ++++AD A+Y AKK G+NR Sbjct: 204 LVEQVARPVVHNDIAVDITISIGIASSVHVGADTNQSPAQDLMHKADIAMYHAKKKGKNR 263 Query: 255 VVCFSDIENN 264 F N Sbjct: 264 FYWFEPPMEN 273 >gi|28900733|ref|NP_800388.1| hypothetical protein VPA0878 [Vibrio parahaemolyticus RIMD 2210633] gi|260362632|ref|ZP_05775539.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] gi|260877671|ref|ZP_05890026.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|260897186|ref|ZP_05905682.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus Peru-466] gi|28809179|dbj|BAC62221.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308088212|gb|EFO37907.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus Peru-466] gi|308090696|gb|EFO40391.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|308112805|gb|EFO50345.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus K5030] Length = 652 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N S F + G ++ ++++ D+D FK+IND +GH G Sbjct: 479 RLEYLAHHDALTGLANRSKFHLELEDLVQRSGYQRDEFAVLYLDLDGFKEINDTYGHDAG 538 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK----IIENSQ 207 D+V+ ++D+L + RL G+EF ++++ +A L + IE Sbjct: 539 DEVLKRVADRLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQLLESICAPIEYKG 598 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + G SI + + G+ ER + I+ AD A+Y AKK+G+ + + Sbjct: 599 NELKVGVSIGVKL-VGVNER----DATRILKSADTAMYQAKKAGKGQAILM 644 >gi|295400746|ref|ZP_06810723.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus thermoglucosidasius C56-YS93] gi|294977327|gb|EFG52928.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus thermoglucosidasius C56-YS93] Length = 842 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 20/160 (12%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N I L + +N +++I++ D+D FK IND+FGH +GD ++ ++ Sbjct: 419 DALTDLPNRRYLIEKLKNELKKAEEHNSRIAILYLDLDNFKNINDSFGHVMGDLLLKNVA 478 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKII--ENSQINISSGP 214 +L ++ F+ RLGG+EFA G+ E+ A L + I EN ++ I++ Sbjct: 479 QRLTMIH-PDCFIARLGGDEFAVLLSGNDFNIEEIACKTIQSLNQPIKLENKEVFITTSV 537 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I + G E T+I AD A+Y AKK G+N+ Sbjct: 538 GISVYPKDGDDE-------MTLIRHADMAMYDAKKKGKNQ 570 >gi|260222135|emb|CBA31398.1| hypothetical protein Csp_F37330 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 666 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 9/165 (5%) Query: 103 LSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+R D L+GL N S + +G + ++++ D+D+FK IND GH GD ++ Sbjct: 245 LARHDSLTGLPNRSHVMQRFADTLRDMGEGATEAALIYIDLDHFKDINDTLGHAAGDALL 304 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++++L + + V RLGG+EF + + +E L I+I G Sbjct: 305 VQVAERLRAITRSSDMVARLGGDEFLILMVSHNIREEVDLVRRRLSSTVAQPIHI-HGAE 363 Query: 216 IHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +T S G++ H + + T++ AD A+Y AK+SGRN + F Sbjct: 364 VIVTPSVGVSFYPEHGKELDTLLRNADLAMYSAKESGRNALNIFE 408 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] gi|133738459|emb|CAL61504.1| Conserved hypothetical protein; putative EAL, GAF, PAS/PAC, GGDEF domains [Herminiimonas arsenicoxydans] Length = 859 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 10/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISS------LGSYNE-KLSIVFFDIDYFKQINDNFGHPVG 151 RI L+ D L+GL N + L ++ L+++F D+D+FK IND GH +G Sbjct: 427 RIESLAHFDVLTGLPNRALLDERAQRALRLAEEDQATLAVMFLDLDHFKNINDTLGHNLG 486 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ L+ +L V + RLGG+EF G++ + A +A +L + I N I Sbjct: 487 DTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGANRESAKKIAQELMRAI-NEPYRIG 545 Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S +++ S GIA T+ AD A+Y AK+ GRN F+ Sbjct: 546 SH-ELNVMASIGIAVYPADGMDFETLCKNADVAMYRAKQEGRNAYRSFT 593 >gi|121535801|ref|ZP_01667602.1| diguanylate cyclase [Thermosinus carboxydivorans Nor1] gi|121305633|gb|EAX46574.1| diguanylate cyclase [Thermosinus carboxydivorans Nor1] Length = 491 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 9/172 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +R+ + D L+GL N+ F Y LS++ DIDYFK ND +GH Sbjct: 315 SRVELQAITDGLTGLYNYRYFQTLFEREFKRAVRYKRPLSLLMIDIDYFKLYNDTYGHRQ 374 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQIN 209 GD +I ++ + V R GGEEFA ++ EA +A +R + E N Sbjct: 375 GDHIIRTIAKIIRQNCRDVDIVVRYGGEEFAVLFPETTVDEAFKIAERIRMAVAEYPFAN 434 Query: 210 ISSGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCFSD 260 S P +T+S G+A + T +I AD ALY AK++ +NRV + D Sbjct: 435 KHSQPGGILTVSMGVAGYPYDAQSETELIDHADMALYRAKRTSKNRVCLYRD 486 >gi|119483249|ref|ZP_01618663.1| hypothetical protein L8106_04331 [Lyngbya sp. PCC 8106] gi|119458016|gb|EAW39138.1| hypothetical protein L8106_04331 [Lyngbya sp. PCC 8106] Length = 1614 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 78/166 (46%), Gaps = 22/166 (13%) Query: 107 DCLSGLLNHS--------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD----KV 154 D L+GL N F S S + L ++ DID+FKQ NDNFGH GD KV Sbjct: 1455 DALTGLFNRRYLKEFLVREFKRSQRS-GQPLGVIMVDIDHFKQFNDNFGHEAGDVVLQKV 1513 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 FL Q+ + R GGEE S + + A +L + I Q++ Sbjct: 1514 AQFLQHQVRL----SDLACRYGGEEMTLILPEMSLENVKVRAEELCQGIRQLQLSYQGKD 1569 Query: 215 SIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257 IT S G+A C + ST ++ +AD ALY AK GRN+VVC Sbjct: 1570 LGQITASFGVA--CFPQQGSTPEEVMKKADDALYQAKHQGRNQVVC 1613 >gi|83647412|ref|YP_435847.1| response regulator [Hahella chejuensis KCTC 2396] gi|83635455|gb|ABC31422.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 435 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 11/174 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148 ++ + +LS +D L+ + N F SL + ++ L+++ D+D+FK ND +GH Sbjct: 230 AHAELERLSLMDSLTQVANRRHFNKSLEAEWNRCLRDDKPLALLMVDVDFFKAYNDAYGH 289 Query: 149 PVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD + ++D L V R GGEEFA + + A LA + + I Sbjct: 290 QRGDDCLMNVADCLTQTSRRAADLVARYGGEEFAVILPHADQAAAQRLAEQIVRQIYELN 349 Query: 208 INISSGPSI-HITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I P + +T+S G + + +T+I +AD ALY+AK+ G+NR F Sbjct: 350 IENEGSPELKRLTVSVGFSALAPSQGDTPNTLISQADSALYMAKRKGKNRAHGF 403 >gi|330828094|ref|YP_004391046.1| GGDEF family protein [Aeromonas veronii B565] gi|328803230|gb|AEB48429.1| GGDEF family protein [Aeromonas veronii B565] Length = 296 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 9/178 (5%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDY 138 + +++ +I ++ + R+ + S D L+GL N F L + ++ DID+ Sbjct: 120 VAWVTRNITRQYELQ-QRLLRQSETDQLTGLYNRRFFFEHCQPLRAGEAPCGLIMLDIDH 178 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FKQ+ND +GH GD+ + S + + R GGEEF E +A Sbjct: 179 FKQLNDRYGHQQGDRALQRFSSCIDALLRADDLFVRSGGEEFLILLPRIDEAGLLQMAEQ 238 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +R +E + + P + IT+S G +E I+ + RAD+ LY AK++GRNRV Sbjct: 239 IRAAVE----ALPADP-VAITVSLGTTLVQPEEEINQALARADEWLYRAKRAGRNRVA 291 >gi|297568323|ref|YP_003689667.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus AHT2] gi|296924238|gb|ADH85048.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus AHT2] Length = 603 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 11/183 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 L E + R+ D L+GL N S +L ++ ++++ D+D+FK + Sbjct: 154 LAERRVMEARLKHRVGHDELTGLPNRSQLEGALELALIRAQNFQRSGALLYLDVDHFKLL 213 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GDK++ ++ L R+GG+EFA ++ ++ LA +LR++ Sbjct: 214 NDTEGHESGDKLLTGVAGVLRRRVLPRHLAVRIGGDEFAVLLENTTTEDVLKLAEELREL 273 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSD 260 + + G ++ S G+A E + ++ RADQA +VAK+ GRNRV C+ D Sbjct: 274 LHEYRFEGCLG-CYNLGASIGVALMSPGESLQAGELLSRADQACHVAKRRGRNRVHCY-D 331 Query: 261 IEN 263 E+ Sbjct: 332 PED 334 >gi|167623780|ref|YP_001674074.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] gi|167353802|gb|ABZ76415.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4] Length = 343 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 5/168 (2%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +++ + +L+ D L+ N AF + + ++ D+D+FK IND +GH +GD V+ Sbjct: 172 AHDSLIKLAHSDSLTKTNNRLAFSEGFNDHQGEY-LLLLDLDHFKSINDTYGHDIGDLVL 230 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSGP 214 +++ + V R+GGEEF LG+S+ E A+ ++ +R+ + I Sbjct: 231 VSVANCFKTLIDESQ-VFRIGGEEF-CIWLGTSDLEGALEHSEKIRRSVAQQSIECDE-Q 287 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 I IT+S G+A+ + S ++ AD LY AK GRN +V ++E Sbjct: 288 KISITVSGGLAQHQPQMLQSELLKMADNRLYCAKSHGRNLIVHKDEME 335 >gi|153838120|ref|ZP_01990787.1| FOG ggdef domain [Vibrio parahaemolyticus AQ3810] gi|149748506|gb|EDM59365.1| FOG ggdef domain [Vibrio parahaemolyticus AQ3810] Length = 656 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N S F + G ++ ++++ D+D FK+IND +GH G Sbjct: 479 RLEYLAHHDALTGLANRSKFHLELEDLVQRSGYQRDEFAVLYLDLDGFKEINDTYGHDAG 538 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK----IIENSQ 207 D+V+ ++D+L + RL G+EF ++++ +A L + IE Sbjct: 539 DEVLKRVADRLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQLLESICAPIEYKG 598 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + G SI + + G+ ER + I+ AD A+Y AKK+G+ + + Sbjct: 599 NELKVGVSIGVKL-VGVNER----DATRILKSADTAMYQAKKAGKGQAILM 644 >gi|21109821|gb|AAM38303.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 983 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 1/122 (0%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK+IND++GH VGD V++ + + L F R GGEEF AA G +A Sbjct: 861 DIDHFKRINDDYGHEVGDAVLSAIGEVLSEQDQAHCFAARHGGEEFLLAATGLDAVQARA 920 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L +R+ + + +++ + G ++ T S G+A ++ AD+ LY AK+ GR+R Sbjct: 921 LFERMRQRLADIEVD-AQGMTVRCTASMGMAMSEEAPSRRELLALADRRLYEAKRQGRDR 979 Query: 255 VV 256 ++ Sbjct: 980 LI 981 >gi|77748715|ref|NP_643767.2| hypothetical protein XAC3460 [Xanthomonas axonopodis pv. citri str. 306] Length = 1000 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 1/122 (0%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK+IND++GH VGD V++ + + L F R GGEEF AA G +A Sbjct: 878 DIDHFKRINDDYGHEVGDAVLSAIGEVLSEQDQAHCFAARHGGEEFLLAATGLDAVQARA 937 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L +R+ + + +++ + G ++ T S G+A ++ AD+ LY AK+ GR+R Sbjct: 938 LFERMRQRLADIEVD-AQGMTVRCTASMGMAMSEEAPSRRELLALADRRLYEAKRQGRDR 996 Query: 255 VV 256 ++ Sbjct: 997 LI 998 >gi|324113159|gb|EGC07134.1| EAL domain-containing protein [Escherichia fergusonii B253] Length = 663 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 14/183 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140 SG+ + E ++ R+ L+ D ++GL N +A + + N ++ IV+ D+D FK Sbjct: 219 SGTDITEERVAQERLRVLANTDTITGLPNRNAIHELIDNAIVQTTNAQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA----LGSSEQEAAILA 196 ++ND +GH GD+++ ++ ++ + R GG+EF A G+ E A+ + Sbjct: 279 KVNDAYGHMFGDQLLQAVALAILSCLDNDQTLARHGGDEFIVLAPDTSQGALEAMASRIL 338 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 LR I + +G S+ I +S H +I AD A+Y AK+ GR + Sbjct: 339 TRLRLPFRIGLIEVQTGCSVGIALSP-----LHGHDSDCLIRSADTAMYTAKEGGRGQFC 393 Query: 257 CFS 259 FS Sbjct: 394 VFS 396 >gi|299132163|ref|ZP_07025358.1| diguanylate cyclase [Afipia sp. 1NLS2] gi|298592300|gb|EFI52500.1| diguanylate cyclase [Afipia sp. 1NLS2] Length = 492 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+SQL+ D L+G+ N F + G LS++ D D+FK ND FGH G Sbjct: 319 KRLSQLATTDALTGIDNRRRFDERILDEWRRGWQKLPLSLLMIDADHFKAFNDLFGHQAG 378 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D+++A ++ +V P R GGEEFA + A LA ++R ++ Sbjct: 379 DQLLARIASCIVESAKRPSDCAARYGGEEFALLLPNTDLAGALKLAEEVR-----DRVAH 433 Query: 211 SSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVVCFSD 260 S T+S GIA C ++ +I AD+ALY AK+ GRNR V ++ Sbjct: 434 LSADKWATTVSIGIA--CLIPDMAGSPKALIAAADKALYQAKEQGRNRCVAINE 485 >gi|285017083|ref|YP_003374794.1| hypothetical protein XALc_0263 [Xanthomonas albilineans GPE PC73] gi|283472301|emb|CBA14807.1| hypothetical protein XALc_0263 [Xanthomonas albilineans] Length = 595 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 12/169 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +R+ S D L+GL N SL + L+++ D+D+FK +ND FGH Sbjct: 412 HRLRTQSIRDPLTGLYNRRYLEESLLRELSRCARRDLPLALMMLDLDHFKALNDRFGHAG 471 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++A L + R GGEEF G++ A A +R +E Q+ Sbjct: 472 GDALLAAFGQLLGGLVRPEDIACRYGGEEFTVILPGAAADVAQRRAEQIRAAVEQMQVQH 531 Query: 211 SSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 IT+S G+A + E ST ++ AD ALY K+SGRNRV Sbjct: 532 HGQMLPSITVSIGVAA--YPEHGSTGEELLRCADAALYCGKRSGRNRVA 578 >gi|254559690|ref|YP_003066785.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens DM4] gi|254266968|emb|CAX22768.1| putative diguanylate cyclase/phosphodiesterase, GGDEF and EAL domains [Methylobacterium extorquens DM4] Length = 668 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GLLN + FI E+L+ ++ D+D FK +ND +GH GD+V+A ++ Sbjct: 241 DGLTGLLNRAGFIQR---AEEQLAAGASVCLMLLDLDGFKSVNDVYGHSTGDRVLAEVAR 297 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHIT 219 ++ V RLGG+EFA + E+ A LA L + + + +G + Sbjct: 298 RIRVAVPVDCDAARLGGDEFALVYDTARVIESPAALAERLIRTVAQPFESFDTG---RLG 354 Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S GI CH+ + ++ ++ AD+ALY AK SGRN F D Sbjct: 355 MSIGI---CHRPSDSLTHLLSCADEALYAAKHSGRNHFRLFDD 394 >gi|213967727|ref|ZP_03395874.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] gi|213927503|gb|EEB61051.1| GGDEF domain protein [Pseudomonas syringae pv. tomato T1] Length = 440 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 214 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 263 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 264 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAYRYGG 323 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + E +R+ I N I N S P S+ + Sbjct: 324 EEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEASVSV 383 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 384 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 430 >gi|146308662|ref|YP_001189127.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp] gi|145576863|gb|ABP86395.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp] Length = 715 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 17/165 (10%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN F ++ + +++++++ D+D FK+IND+ GH VGD+++ + Sbjct: 282 DSLTGLLNRRGFHLALESALARIERSGQRIAVLYLDLDGFKRINDSLGHDVGDQLLRRVG 341 Query: 160 DQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +QL + R+GG+EF A LG E +AA +A L +++ S + G Sbjct: 342 EQLKACLRPYDSLARIGGDEFTALLDNLGHPE-DAAKVAEKLIELV--SVRHTLDGVDFA 398 Query: 218 ITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259 + S GIA C E + ++ AD A+Y AK++GR + FS Sbjct: 399 LGASVGIA--CFPECGQSVEGLLRSADMAMYEAKRAGRQQYRFFS 441 >gi|94264857|ref|ZP_01288632.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93454678|gb|EAT04943.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 833 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 7/174 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 E Y+ ++ L D L+ LNH A I ++ +L++ + D+D FK IND GH VG Sbjct: 398 ERIAHYDTLTGLPNRDLLADRLNH-AMIQTI-RRQTRLAVAYLDLDGFKAINDTHGHDVG 455 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ L+ ++ +GRLGG+EF A + E + L++++ + + +S Sbjct: 456 DFLLRTLAGRMQQTLRESDTLGRLGGDEFVAIFQDLPDNETCLPL--LQRLLNAAAMPVS 513 Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIE 262 +I ++ S G+ E I ++ +ADQA+Y AK++G+NR F ++ Sbjct: 514 YQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQAKQTGKNRYHLFDAVQ 567 >gi|330881636|gb|EGH15785.1| PAS:GGDEF protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 333 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK +ND +GH GD V+ +++ GR+GGEEFAA G + Sbjct: 204 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 263 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247 A +A L++ I+ S G + IT S G+ ++ + T+ RAD A+Y A Sbjct: 264 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGPEDSSLETLYGRADAAMYQA 322 Query: 248 KKSGRNRVV 256 K+ G+N++V Sbjct: 323 KRQGKNQIV 331 >gi|255654751|ref|ZP_05400160.1| putative signaling protein [Clostridium difficile QCD-23m63] Length = 833 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 13/165 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150 NR+ + D L+ + N +A+I L + N + +++ DIDYFK IND +GH V Sbjct: 670 NRLLDKVQRDSLTNIYN-AAYIRKLTAQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLV 728 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209 GDK++ ++ L F VGRLGG+EF+ E I ND+ I I Sbjct: 729 GDKILIDVAKVLDESFTKDDIVGRLGGDEFSVYINDIINNEELINKCNDVYNRIH--LIK 786 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +G S+ I++ IA +C +E + AD ALY +K+ GRNR Sbjct: 787 LPNGKSLSISMGVVIA-KCGQE-YDELYQIADNALYDSKREGRNR 829 >gi|153828795|ref|ZP_01981462.1| ggdef family protein [Vibrio cholerae 623-39] gi|148875748|gb|EDL73883.1| ggdef family protein [Vibrio cholerae 623-39] Length = 527 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 6/153 (3%) Query: 107 DCLSGLLNHSAFISSLGSY-NEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ + N F L +EK S ++ FDID FKQIND++GH GD + + D + Sbjct: 353 DSLTHIYNRRFFSQHLCKMLDEKQSFTLISFDIDRFKQINDSYGHLAGDYALTHVVDVVK 412 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 R GG+EFA + + E +RK++E + +++ + +TIS G Sbjct: 413 KELVESDIFARFGGDEFAILSSVTDETALYTYLERIRKVVEAEPVMLNAETPLTLTISIG 472 Query: 224 IAERC-HKEPISTIIYRADQALYVAKKSGRNRV 255 + C + EP I+ D LY++K GRNRV Sbjct: 473 ASINCEYSEP--EILQSVDDQLYLSKSKGRNRV 503 >gi|194367156|ref|YP_002029766.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] gi|194349960|gb|ACF53083.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] Length = 481 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 13/193 (6%) Query: 82 LGYISGSILKELFISYNRIS--QLSRIDCLSGLLNHSAFISSL-GSYNE------KLSIV 132 LG+ SIL ++ + + S QL+R D L+G+ N F + L +N +L ++ Sbjct: 282 LGFGVRSILLQVDLMERQASLDQLARQDGLTGVANRREFDALLLAEWNRARRSGSELGLL 341 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191 DID+FK ND GHP GD+ + ++ L + G V R GGEEFA GS Sbjct: 342 LLDIDHFKVFNDRHGHPAGDRCLQAVATVLKISAGRAGDSVARYGGEEFAVIVPGSPLSG 401 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 LA LR+ + + + + G S+ I+I G ++ AD LY AK++G Sbjct: 402 VLALAERLREAV--AALPLPEG-SVSISIGVGYLHPPALASADQLLADADAGLYAAKRAG 458 Query: 252 RNRVVCFSDIENN 264 RN+V+ + + ++ Sbjct: 459 RNQVILHAHVLDD 471 >gi|86159126|ref|YP_465911.1| GAF sensor-containing diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775637|gb|ABC82474.1| diguanylate cyclase with GAF sensor [Anaeromyxobacter dehalogenans 2CP-C] Length = 494 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 9/137 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149 + ++ +LS+ D L+G+ N + + L E+ +++ D+D FKQ N+ FGH Sbjct: 301 HQKMVRLSQSDALTGVHNRRSLFARLDMERERCERFDHPMALALVDVDRFKQFNEAFGHA 360 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQI 208 GD ++ +++ L V R GGEEF A +++EAA+LA++ LR+ +E + + Sbjct: 361 AGDGILRRVAELLAGAVRKVDLVARYGGEEF-AVIFPRADREAALLASEKLRQAVEAAAL 419 Query: 209 NISSGPSIHITISAGIA 225 + H+TIS G+A Sbjct: 420 PHDASERGHVTISVGVA 436 >gi|159185090|ref|NP_355140.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] gi|159140363|gb|AAK87925.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] Length = 379 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 9/165 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI-VFFDIDYFKQINDNFGHPVGDKV 154 S ++ L+ D L+G+ N F ++ + + + DID+FK IND FGH VGD V Sbjct: 213 SERKLLVLANTDPLTGVKNRRFFFQTMPAAPDPADAAMLLDIDHFKSINDRFGHAVGDSV 272 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ ++ + R GGEEF G+ +A ++ +R + ++++ G Sbjct: 273 LQEVARRISGSIRGGDVLARYGGEEFIIFLPGAGVDKACMIGERIRDAVAINEVD-CGGL 331 Query: 215 SIHITISAGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +TIS G+A RC + ++ +AD+ALY AK GRN V Sbjct: 332 RVGVTISIGVATTGDMRCDLQMLAE---KADRALYRAKTEGRNCV 373 >gi|70734241|ref|YP_257881.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5] gi|68348540|gb|AAY96146.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5] Length = 422 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 12/156 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + F + S NE+++++F D D FK+INDNFGH GD V+ ++ Sbjct: 250 DSLTGLPNRAFFEGRLIRALRSANKLNERMAVLFLDSDRFKEINDNFGHAAGDAVLVAVA 309 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI- 218 ++ V RLGG+EFA E A D KII + ++ I S+ I Sbjct: 310 TRIRAQLREDDLVARLGGDEFAVLLTPLHRVEDAQRIAD--KIISSMEVPIQLPGSLSIL 367 Query: 219 -TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252 ++S GIA H +++ AD A+Y AK+ R Sbjct: 368 TSLSIGIAVYPDHGATPGSLLNAADAAMYQAKRGSR 403 >gi|325517996|gb|EGC97812.1| diguanylate cyclase [Burkholderia sp. TJI49] Length = 234 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 9/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVF----FDIDYFK 140 S L+EL + ++ ++ D ++G N FI+ + E+ F D+D FK Sbjct: 57 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFK 116 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH +GD+V+ + Q + + R+GGEEF A + A + A +R Sbjct: 117 NINDAYGHQIGDEVLRGVVRQCLDAIRPAGGLARVGGEEFMALLPEMPLEGARMTAERVR 176 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I +S + + +T+S G+A+ + ++ D+ LY AK+ GRNRVV Sbjct: 177 SSIASSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRAVDERLYQAKREGRNRVVA 233 >gi|257470395|ref|ZP_05634486.1| putative signaling protein [Fusobacterium ulcerans ATCC 49185] gi|317064603|ref|ZP_07929088.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313690279|gb|EFS27114.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 340 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 15/162 (9%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSI----VFFDIDYFKQINDNFGHPVGDKVIAFLS 159 S+ D L+GLLN S + E + + D+D FK+IND GH GD+++ ++ Sbjct: 71 SQHDPLTGLLNRREMKSRVNKLLENGDVEGTFIIIDVDNFKKINDVQGHVKGDEILKKIA 130 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L F + R+GG+EF ALG S+++ N ++I++++I Sbjct: 131 ESLRKSFLEIDDISRIGGDEFVVFALGDISKEKLEEKMNKFFELIKDAEI---------- 180 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 T SAG+ + H++ ++ Y AD AL AK SG+N+ F++ Sbjct: 181 TCSAGVCKTSHRDDYDSLYYNADMALISAKISGKNKYKVFTE 222 >gi|238791809|ref|ZP_04635446.1| hypothetical protein yinte0001_15250 [Yersinia intermedia ATCC 29909] gi|238728913|gb|EEQ20430.1| hypothetical protein yinte0001_15250 [Yersinia intermedia ATCC 29909] Length = 471 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 11/177 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 + EL S + + LS+ D L+G+ N F +K LS++ D D FK Sbjct: 289 ITELKQSESILKALSQTDVLTGVANRRHFDDIYQHIWQKNRTEGGALSVLMIDFDNFKSF 348 Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH +GD + + + L + G + R GGEEF S+ ++A +A +R Sbjct: 349 NDLYGHAMGDVCLKSIVETLSKSIRGGSDILARYGGEEFIVLLAPSTLEDAKAVAERMRH 408 Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPIST--IIYRADQALYVAKKSGRNRV 255 IE I P +TIS G+A E IS + AD+ALY AK +GRNRV Sbjct: 409 SIEELDIPHGMSPGGRVTISIGVASVSAPGESISATDVSVAADKALYRAKTAGRNRV 465 >gi|229010055|ref|ZP_04167269.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048] gi|228751188|gb|EEM01000.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048] Length = 569 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS--IVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ EK+ +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF + E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTNDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|257058436|ref|YP_003136324.1| diguanylate cyclase [Cyanothece sp. PCC 8802] gi|256588602|gb|ACU99488.1| diguanylate cyclase [Cyanothece sp. PCC 8802] Length = 285 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 12/166 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 +Y R L+R D L+G N+ F I+ Y L++ +FD+D FKQ+ND GH Sbjct: 117 AYEREKVLARTDSLTGAFNNRFFREILQIEINRCYRYQHPLTLAYFDVDNFKQVNDQLGH 176 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+++ ++ + + RLGG+EFA + + I+ LR++ E + Sbjct: 177 SSGDQLLQLITQIIQKNIRQTDTLARLGGDEFALLLPETDYNQGQIV---LRRVQEELLL 233 Query: 209 NISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRN 253 I S + I S G+ E + + + D +Y KK G+N Sbjct: 234 TIES-EKVPIGFSIGVLTHNIAPESVDKALEKVDSLMYTVKKQGKN 278 >gi|254249082|ref|ZP_04942402.1| hypothetical protein BCPG_03942 [Burkholderia cenocepacia PC184] gi|124875583|gb|EAY65573.1| hypothetical protein BCPG_03942 [Burkholderia cenocepacia PC184] Length = 744 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 17/186 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDID 137 SG + E + R+++L+ D L+GL N H+A + + I+F D+D Sbjct: 297 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIHAAIAEEDANTRGHVGILFLDLD 356 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193 FK++ND++GH GD+++ +S + + + RLGG+E F A E A Sbjct: 357 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEHATRPLLEATAQ 416 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I+ LR I + + + SI I + H + + T+I AD A+YVAK+ G++ Sbjct: 417 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRSADTAMYVAKEEGKH 471 Query: 254 RVVCFS 259 FS Sbjct: 472 TYRVFS 477 >gi|91223268|ref|ZP_01258534.1| GGDEF family protein [Vibrio alginolyticus 12G01] gi|91192081|gb|EAS78344.1| GGDEF family protein [Vibrio alginolyticus 12G01] Length = 527 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 15/192 (7%) Query: 75 SITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS---YNE 127 + + L+L + LKE + N ++QL + D L+ L N L ++ Sbjct: 336 ELQLKLILSELENKELKETTKQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDLLLHDT 395 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAA 183 +++ DID+FK IND H VGDK I +S +L F F G R GGEEF Sbjct: 396 AFALMVIDIDHFKSINDELSHLVGDKAIKSVSQELASYF---RFKGASCVRFGGEEFLVI 452 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 + + A + A + R+ I + G +T+S GI E YRAD+A Sbjct: 453 LENTQLERAEMHAENYRERIYQYGWDDILGER-GLTVSIGITLHREGENTQRTFYRADKA 511 Query: 244 LYVAKKSGRNRV 255 LY AK +GRN+V Sbjct: 512 LYRAKANGRNQV 523 >gi|3659615|gb|AAC61684.1| diguanylate cyclase [Gluconacetobacter xylinus] Length = 580 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 12/187 (6%) Query: 83 GYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVF 133 GY++ + EL + +R+ L+ D L+GL N F + L + E S +V Sbjct: 120 GYVATRFEITELMNTRDRLKSLAATDPLTGLFNRGGFNNVLQTAVEDKSQNITRDIMLVM 179 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 FD+D FKQIND GH GD V+ +S++L+ + V RLGG+EFA + + Sbjct: 180 FDLDGFKQINDIHGHHAGDVVLKVISNRLLALVHPEDAVCRLGGDEFALILNHTLHKFPL 239 Query: 194 ILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 L L K++ + I G + ++++ S G+ +E ++ AD ALY AK++G Sbjct: 240 SLM--LEKLLAELEAPIEVGNTMVNVSGSIGVTPIASQESAESLQKNADIALYAAKRAGG 297 Query: 253 NRVVCFS 259 ++ F Sbjct: 298 HQARMFD 304 >gi|78188889|ref|YP_379227.1| diguanylate cyclase [Chlorobium chlorochromatii CaD3] gi|78171088|gb|ABB28184.1| diguanylate cyclase (GGDEF domain) [Chlorobium chlorochromatii CaD3] Length = 418 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 8/142 (5%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV---VFGTPMFVGRLGGEEFAAA 183 + LS+ DID+FKQ ND GH GDK + ++ + V+ P R GG+EFA Sbjct: 277 DSLSLAMLDIDFFKQYNDANGHLSGDKALKRFAELISAECRVYDLP---ARFGGDEFALL 333 Query: 184 ALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAE-RCHKEPISTIIYRAD 241 +S +AA +A LR +IE++ + P +TIS G+A + +++ AD Sbjct: 334 FPRTSAADAADIAERLRHLIESASFPHAECFPDGKLTISIGLATFPNDAQDWHSLLNNAD 393 Query: 242 QALYVAKKSGRNRVVCFSDIEN 263 +ALY AK GRN VV FS+++ Sbjct: 394 RALYKAKALGRNSVVSFSEVKQ 415 >gi|21243539|ref|NP_643121.1| hypothetical protein XAC2812 [Xanthomonas axonopodis pv. citri str. 306] gi|21109104|gb|AAM37657.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 788 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 9/165 (5%) Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D ++GL+N L S ++ F D+D+FK +ND FGH VGD+ + Sbjct: 357 ARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLC 416 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +D + + + ++GRLGG+EFA + +A I+ + + + G + Sbjct: 417 HFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQIVLERMHGAL-GQPWSHQGGRPL 475 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + S G+ E R ++ ++ AD A + AK+ GRNR+ CF++ Sbjct: 476 TPSCSFGVVEIRQGVGDLNALMTAADLACHAAKEEGRNRIRCFNE 520 >gi|330890171|gb|EGH22832.1| PAS:GGDEF protein [Pseudomonas syringae pv. mori str. 301020] Length = 332 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK +ND +GH GD V+ +++ GR+GGEEFAA G + Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247 A +A L++ I+ S G + IT S G+ ++ + T+ RAD A+Y A Sbjct: 263 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGPEDSSLETLYGRADAAMYQA 321 Query: 248 KKSGRNRVV 256 K+ G+N++V Sbjct: 322 KRQGKNQIV 330 >gi|323496651|ref|ZP_08101703.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326] gi|323318304|gb|EGA71263.1| diguanylate cyclase [Vibrio sinaloensis DSM 21326] Length = 354 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 25/175 (14%) Query: 98 NRISQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 + + LS D L+G LN H++ ++ YN +IV DID+FK IND +GH VGD Sbjct: 171 SELRHLSERDVLTGALNRHQLHASLERAIEQYNHS-TIVMIDIDHFKVINDQYGHDVGDD 229 Query: 154 VIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALG----SSEQEAAILANDLRKIIEN 205 VI +++V V RLGG+EF G S E A++ +++R+ Sbjct: 230 VI----NEVVRVLNHNTRADDRLFRLGGDEFLLLFHGIDQYSVESIMALICHNVREQNYP 285 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 Q +T+S GIA+ E + RAD ALY +K GRNRV + D Sbjct: 286 HQKE--------VTLSCGIAQSQPFEESQGWMKRADLALYQSKALGRNRVSVYCD 332 >gi|300114166|ref|YP_003760741.1| GAF/PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] gi|299540103|gb|ADJ28420.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Nitrosococcus watsonii C-113] Length = 946 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 17/168 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ L+ D L+GL N S F+ L ++ +L+++F D+D FK +ND GHP+ Sbjct: 504 QRLYHLAHHDALTGLPNRSLFLDRLEHAIHHAQRHDHRLAVLFIDLDRFKFVNDTLGHPI 563 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQI 208 GD ++ +++++ + + RLGG+EF ++ A L +KIIE Sbjct: 564 GDSLLKQVAERMRLNVRAEDTIARLGGDEFTVIIENFTDTSALSLI--AQKIIEACKEPF 621 Query: 209 NISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253 NI G + I+ S GI+ E H+ + ++ AD A+Y AKK G++ Sbjct: 622 NI-KGKELFISASIGISLYPEDGHE--ANMLLQHADAAMYRAKKRGKS 666 >gi|319763232|ref|YP_004127169.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|330825426|ref|YP_004388729.1| diguanylate cyclase [Alicycliphilus denitrificans K601] gi|317117793|gb|ADV00282.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|329310798|gb|AEB85213.1| diguanylate cyclase [Alicycliphilus denitrificans K601] Length = 257 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N + +LS D L+GL N + + E ++ DID+FKQ+ND GH Sbjct: 48 NGLCELSLKDPLTGLPNRRHVHGVLERELDRVARSGEAALLLMLDIDHFKQVNDCHGHLA 107 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ ++ L V R GGEEFA ++A +R+ IE++ + + Sbjct: 108 GDIVLQSVARTLESCVRPMDTVSRYGGEEFAIVLPACQFGFGRVVAERVRRAIESTPVYV 167 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRV 255 S ++++T+S G A +T ++ RAD LY AK SGRNRV Sbjct: 168 SPSLTLNVTVSIGGAFALQWIRSTTALWTDRADAELYKAKLSGRNRV 214 >gi|293602568|ref|ZP_06685013.1| diguanylate cyclase with PAS/PAC sensor [Achromobacter piechaudii ATCC 43553] gi|292819044|gb|EFF78080.1| diguanylate cyclase with PAS/PAC sensor [Achromobacter piechaudii ATCC 43553] Length = 441 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 28/185 (15%) Query: 88 SILKELFISYNRISQLSRI---DCLSGLLNHS-------AFISSLGSYNEKLSIVFFDID 137 S+ K++ R L R D L+GL N + ++S + ++ LS++ D+D Sbjct: 239 SVSKDVSQQVEREQALLRAATKDKLTGLYNRAHGEKTLRDAVASAETGDDPLSLIIADVD 298 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK+IND+FGH GD+V++ ++ L + + R GGEEF +LA+ Sbjct: 299 HFKRINDHFGHLAGDRVLSEIARILQGAVRSQDTIIRWGGEEF-----------VIVLAD 347 Query: 198 ----DLRKIIENSQINISSGPSIHI---TISAGIAERCHKEPISTIIYRADQALYVAKKS 250 D I E ++ + + I ++S G+A+ E I +I RAD ALY AK+ Sbjct: 348 CPILDAIDIAERARTCVHAHRDAEIGSLSLSLGVAQFVAGETIEELIARADTALYEAKRG 407 Query: 251 GRNRV 255 GRNR+ Sbjct: 408 GRNRL 412 >gi|156972882|ref|YP_001443789.1| signal transduction protein [Vibrio harveyi ATCC BAA-1116] gi|156524476|gb|ABU69562.1| hypothetical protein VIBHAR_00559 [Vibrio harveyi ATCC BAA-1116] Length = 815 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 12/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 ++ +++ D L+ L N + IS L + E + +F DID+FK IND+ GH G Sbjct: 389 KLQRMAFYDPLTNLPNRTHLISLLEQHIESGQQHQHAFATLFLDIDHFKHINDSMGHFCG 448 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209 D+++ L+D+L V V R+GG+EF L + E ++ ++ + + I+ N Sbjct: 449 DQLLTKLADRLQDVLHLRAHVARIGGDEF-VIILPNIESDSQLI-DTIEDILCLFNRPFE 506 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S + I+ S G+A + T++ AD A+Y+AKK+GRN +S Sbjct: 507 VSKNEPLRISTSVGVARYPQDGQESETLLKNADTAMYLAKKNGRNGYAFYS 557 >gi|118589369|ref|ZP_01546775.1| sensory box/GGDEF family protein [Stappia aggregata IAM 12614] gi|118438069|gb|EAV44704.1| sensory box/GGDEF family protein [Stappia aggregata IAM 12614] Length = 830 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 21/173 (12%) Query: 100 ISQLSRIDCLSGLLNHSAFI----SSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151 +S L+ D L+G+ N S F+ + L N+ L++ D+D FK +ND GHP G Sbjct: 384 VSHLAEHDSLTGIGNRSWFLKQAEAQLEEQNQNGQNTLTLFLIDLDNFKVVNDTSGHPAG 443 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL----RKIIENSQ 207 D+++ ++ + + + R GG+EFAA S+Q A A +L RK + Sbjct: 444 DELLRQVASRFTALGEGRTMLARFGGDEFAALGRFVSDQAALAFAEELVAVTRKPFRIGR 503 Query: 208 INISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + G ++ T R H K+ + ++ +AD ALY AK+ GR R + F Sbjct: 504 RDFAIGATVGFT-------RLHDSKDTVDDLMRKADIALYKAKEGGRGRSLAF 549 >gi|16331924|ref|NP_442652.1| PleD-like-protein [Synechocystis sp. PCC 6803] gi|1001841|dbj|BAA10723.1| sll0779 [Synechocystis sp. PCC 6803] Length = 884 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 89/182 (48%), Gaps = 14/182 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L+E+ I R++Q ID L+G+ N F +L E L++V DIDYFK Sbjct: 695 LQEVNIELERLTQ---IDGLTGVYNRRFFDQALEREWQIAFRETESLTLVMLDIDYFKLY 751 Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND GH GD + ++ L V T V R GGEEFA + A I+A ++ Sbjct: 752 NDTLGHQAGDHCLRIVAAILQESVHRTSDLVARYGGEEFALILPRTDLSGAVIVAQRIKT 811 Query: 202 IIENSQIN-ISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCF 258 +++ I+ +S + ++T+S GI + +S + + AD ALY AKK GRN Sbjct: 812 LMDAKAISHPTSEIANYVTVSIGIHCAVPRPGLSLASWVKCADDALYQAKKRGRNGYFVL 871 Query: 259 SD 260 D Sbjct: 872 ED 873 >gi|330448603|ref|ZP_08312251.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492794|dbj|GAA06748.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 668 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 89/173 (51%), Gaps = 8/173 (4%) Query: 98 NRISQLSRIDCLSGLLN----HSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGD 152 R++ +++ D L+ L N H I L E ++++F D+D FK +ND++GH +GD Sbjct: 493 QRLAHIAQHDTLTHLPNREFLHRYLIEKLSMPRLETMAVLFIDLDGFKFVNDSYGHEIGD 552 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ ++ +L++ V RL G+EF A +E+ + + + INI Sbjct: 553 QVLQIVAKKLMISVRQNDIVTRLAGDEFVAVLNPVKTRESILNIGNRIINNISQPINI-K 611 Query: 213 GPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 G IH+ S G E I ++++ AD A+Y +K G+ R+ F+ ++N Sbjct: 612 GHMIHVGASIGCYYIESNDVTGIDSVLHCADMAMYQSKMQGKGRITEFNQLKN 664 >gi|325109953|ref|YP_004271021.1| diguanylate cyclase [Planctomyces brasiliensis DSM 5305] gi|324970221|gb|ADY60999.1| diguanylate cyclase [Planctomyces brasiliensis DSM 5305] Length = 650 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 12/161 (7%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N + F +L + + ++F DID FK +ND +GH GD+V+ + Sbjct: 345 DPLTGVFNRAYFDKALNDAINHSRDRYQPVGVIFTDIDKFKSLNDTYGHHFGDQVLKTFA 404 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + + R GGEEF +E+ LA +R +E QI G + IT Sbjct: 405 KVVAGNMRSADVLARYGGEEFVILVSRPTEKGIEKLAERIRATVEK-QIIEEQGTRVSIT 463 Query: 220 ISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G I R ++ ++ AD+A+Y +K++GRNR Sbjct: 464 ASFGAALMIPGRLERDCAQHLLQTADEAMYESKRTGRNRTT 504 >gi|284991825|ref|YP_003410379.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160] gi|284065070|gb|ADB76008.1| diguanylate cyclase [Geodermatophilus obscurus DSM 43160] Length = 388 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 9/164 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GL N + +++ + D+D+FKQ+ND GH GD V+ Sbjct: 200 LSHQDPLTGLANRRFLLEQAPRVWRQARREGSRVAAMVLDLDHFKQLNDAHGHAAGDAVL 259 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-- 213 ++ L + R GGEE L S EA LA LR + S+ + Sbjct: 260 RAVATSLAATVRPSDVLARTGGEELIVLGLVSDPAEAHRLAERLRAAVRTSRTDEGHAVT 319 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 SI I + + + + ++ RAD A+Y AK++GR+RV Sbjct: 320 ASIGIALDRPVDGEEAGDAMWRLVDRADGAMYAAKQAGRDRVAA 363 >gi|283785416|ref|YP_003365281.1| signal transduction protein [Citrobacter rodentium ICC168] gi|282948870|emb|CBG88472.1| putative signal transduction protein [Citrobacter rodentium ICC168] Length = 667 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 10/181 (5%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFK 140 SG + E + R+ L+ D ++GL N +A + + ++ IV+ D+D FK Sbjct: 219 SGIDITEERRAQERLRVLANTDTITGLPNRNAIHELINEAIANASGGQVGIVYLDLDNFK 278 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDL 199 ++ND +GH GD+++ +S L+ + RLGG+EF A +S+ A+ + L Sbjct: 279 KVNDAYGHMFGDQLLQAVSLALLSCLEENQILARLGGDEFIVLASHTSQSSLEAVASRIL 338 Query: 200 RKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ + +I + P ++ S GIA H E ++I AD A+Y AK+ GR + F Sbjct: 339 TRLRQPFRIGL---PEVYTGCSVGIAMAPQHGEDSHSLIRNADTAMYTAKEGGRGQFCVF 395 Query: 259 S 259 S Sbjct: 396 S 396 >gi|229514820|ref|ZP_04404281.1| diguanylate cyclase with PAS/PAC sensor [Vibrio cholerae TMA 21] gi|229348800|gb|EEO13758.1| diguanylate cyclase with PAS/PAC sensor [Vibrio cholerae TMA 21] Length = 326 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 86/173 (49%), Gaps = 23/173 (13%) Query: 99 RISQLSRIDCLSGLLNHSAF----------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 ++ QLS+ID L+ + N F S LG +SI+ DIDYFK+ ND +GH Sbjct: 155 KLEQLSKIDGLTKISNRRYFDIKLDEIWREYSRLG---HPVSIILIDIDYFKRYNDIYGH 211 Query: 149 PVGDK----VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GD V L +Q V V R GGEEFA + + +A LA +R ++ Sbjct: 212 QAGDHCLCSVAGALKNQAKRVND---IVARYGGEEFAVISCTDID-DAFELAEKMRLAVQ 267 Query: 205 NSQINISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRV 255 + I ++IS GIA + IS++I +ADQALY +K +GRN+ Sbjct: 268 SLSIEHKLSDKKIVSISLGIASTIPSRDKDISSLIEKADQALYESKGNGRNKT 320 >gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 1526 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 31/191 (16%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNE--------------KLS 130 IL+E + +++ Q S D L+GL N +++ ++ + N L Sbjct: 1295 ILQE---ANDKLEQASLTDSLTGLRNRRFLNNSIVADIAIANRAYKGWVKGDAPLASDLI 1351 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + DID FK+IND +GH GD+++ +S QL + + R GGEEF + + Sbjct: 1352 FIVLDIDCFKEINDTYGHRSGDRMLEQISQQLRSLLRESDYAIRWGGEEFLLVIRFVARE 1411 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH----KEPIS----TIIYRADQ 242 A + +R IE + + +G I T S G A C+ EP + +I AD+ Sbjct: 1412 GAEEVVERIRSTIEAFEFELDNGEKIKRTCSMGYA--CYPFIRAEPTALSWEQVIDGADR 1469 Query: 243 ALYVAKKSGRN 253 ALY+AK SGRN Sbjct: 1470 ALYIAKSSGRN 1480 >gi|26987880|ref|NP_743305.1| GGDEF domain-containing protein [Pseudomonas putida KT2440] gi|24982585|gb|AAN66769.1|AE016305_4 GGDEF domain protein [Pseudomonas putida KT2440] Length = 754 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 18/184 (9%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140 +L +L + + Q + D L+ LLN F + S N +L+++F DID+FK Sbjct: 275 LLSQLDQARASLQQAAHYDALTNLLNRRGFNQVFAERLVEHQASEN-RLAVMFLDIDHFK 333 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND+ GH GD+++ +++ + V R GG+EF +S EA LA + Sbjct: 334 RINDSLGHDAGDELLKVIANHIKAATRNHDLVARFGGDEFCVVTSLNSRDEARHLA---Q 390 Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 +I++ + I G + +T S GI+ + ST ++ AD ALY +K +GRN + Sbjct: 391 RIMQRMKDPIDLGGRRMVMTTSIGIS--IFPDDGSTAEELLKHADLALYQSKDNGRNSLN 448 Query: 257 CFSD 260 F+D Sbjct: 449 FFND 452 >gi|110635931|ref|YP_676139.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium sp. BNC1] gi|110286915|gb|ABG64974.1| diguanylate cyclase/phosphodiesterase [Chelativorans sp. BNC1] Length = 647 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 110/250 (44%), Gaps = 22/250 (8%) Query: 30 YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLG---YIS 86 Y I S + ++ + FL+ G Y++V ++L I + ++G ++ Sbjct: 149 YAVISISFMLPPLLVVIACFLYQGGFE-----SYLMVLAVALFIAGLIRGAMVGQARFLE 203 Query: 87 GSILK-ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQI 142 GS LK E + Q SR D LSGLLN I L + + D+D FK + Sbjct: 204 GSRLKHEARQIAAEMEQSSREDPLSGLLNRRGLEHAIEGLAETDGPFVTMLIDLDGFKSV 263 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRK 201 ND +GH +GD ++ ++ ++ + R+GG+EF ++ LA DL Sbjct: 264 NDTYGHKIGDDLLVRIAHRVGESAPPGAILSRIGGDEFVLLYPERAAPHPPGQLALDLIA 323 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF--- 258 I + ++ S+ I GI R K ++ ++ RAD ALY AK GRN F Sbjct: 324 AIASPYFLVA---SVRIGACIGIY-RSQKPSLTEMLLRADIALYAAKGRGRNEFCEFDEN 379 Query: 259 --SDIENNTC 266 ++E C Sbjct: 380 LQQELERRQC 389 >gi|332992119|gb|AEF02174.1| hypothetical protein ambt_03100 [Alteromonas sp. SN2] Length = 399 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 6/135 (4%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 E ++ DIDYFK IND++GH +GD V+ ++ L V R GGEEF Sbjct: 263 EDYCVIMIDIDYFKSINDSYGHTIGDLVLRGVAKTLQKCVRQNDIVARFGGEEFCIVLPD 322 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245 +S +A +A ++R+ I+ + I IT S G++ R + S I +AD AL+ Sbjct: 323 TSSHQAMRIAENMRETIQ-----VCRFDDIAITCSLGVSSIRFNATTPSEFIDQADLALF 377 Query: 246 VAKKSGRNRVVCFSD 260 +K GRNRV +S+ Sbjct: 378 KSKSLGRNRVTLWSE 392 >gi|330829848|ref|YP_004392800.1| signal transduction family protein [Aeromonas veronii B565] gi|328804984|gb|AEB50183.1| Signal transduction family protein [Aeromonas veronii B565] Length = 348 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 14/175 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 KEL + ++ LS D L+ + N F +SL E+ ++++ DID+FKQ N Sbjct: 160 KELAEANRKLEALSNTDGLTNIGNRRLFDNSLNQAWERCIQTEMPIALIMLDIDHFKQFN 219 Query: 144 DNFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD+ + L+ L + V R GGEEF Q A +A ++++ Sbjct: 220 DLYGHVAGDECLRLLAHTLAQSGRRSGELVARYGGEEFVILLPHVERQSAYEIAQHIQRL 279 Query: 203 I-ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRN 253 I +Q + + + +T+S G+A H +P S ++ AD ALY AK SGRN Sbjct: 280 IFALAQPHAQNATGL-LTVSMGVACLRPSSHWQP-SELVKLADAALYTAKSSGRN 332 >gi|313105738|ref|ZP_07792001.1| hypothetical protein PA39016_000110035 [Pseudomonas aeruginosa 39016] gi|310878503|gb|EFQ37097.1| hypothetical protein PA39016_000110035 [Pseudomonas aeruginosa 39016] Length = 818 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 17/177 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151 R+S + D L+GL N F L E+L +++F D+D FK +ND GH G Sbjct: 369 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 428 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ + L + RLGG+EF ++A +A+ LRK +++ S Sbjct: 429 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWS 488 Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262 P + T+S G+ H P IST+ + AD A Y+AK+ GRNRV F D+E Sbjct: 489 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 541 >gi|296390786|ref|ZP_06880261.1| hypothetical protein PaerPAb_21643 [Pseudomonas aeruginosa PAb1] Length = 827 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 17/177 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151 R+S + D L+GL N F L E+L +++F D+D FK +ND GH G Sbjct: 369 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 428 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ + L + RLGG+EF ++A +A+ LRK +++ S Sbjct: 429 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWS 488 Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262 P + T+S G+ H P IST+ + AD A Y+AK+ GRNRV F D+E Sbjct: 489 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 541 >gi|289662083|ref|ZP_06483664.1| hypothetical protein XcampvN_03013 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 975 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 1/122 (0%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK+IND++GH VGD V+ + L F R GGEEF AA+G +A Sbjct: 853 DIDHFKRINDDYGHEVGDAVLFAIGQVLSEQDQAHCFAARHGGEEFLLAAIGLDAAQARA 912 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L +R+ + + Q++ + G + T S G+A ++ AD+ LY AK+ GR+R Sbjct: 913 LFERVRQRLADIQVD-AQGTPVRCTASMGMAMSDEAPSRRELLALADRRLYDAKRQGRDR 971 Query: 255 VV 256 ++ Sbjct: 972 LI 973 >gi|260774036|ref|ZP_05882951.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14] gi|260610997|gb|EEX36201.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14] Length = 526 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 79/168 (47%), Gaps = 14/168 (8%) Query: 98 NRISQLSR---IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 N ++QL + D L+ L N + L + + + DID+FK IND H VG Sbjct: 360 NTVAQLQQDVFTDPLTQLHNRRWLEIKLKDLLLHETSFAFLVVDIDHFKSINDELSHLVG 419 Query: 152 DKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 DK I +S+ L F F G R GGEEF G S +A + A+ R+ I N Sbjct: 420 DKAITHVSETLADYFK---FRGASCVRFGGEEFLVILEGCSLDQAIMHADTFRERIVNYD 476 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G +T+S GI E YRAD+ALY AK +GRN+V Sbjct: 477 WQTILGER-GLTVSIGITLHRDGENTQRTFYRADKALYRAKANGRNQV 523 >gi|237653803|ref|YP_002890117.1| diguanylate cyclase [Thauera sp. MZ1T] gi|237625050|gb|ACR01740.1| diguanylate cyclase [Thauera sp. MZ1T] Length = 614 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 20/170 (11%) Query: 101 SQLSRIDCLSGLLNH----------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 S+L R D L+G LN SA G+ +L++ DID+FK++ND+ GH Sbjct: 447 SRLMRHDQLTGALNRRGLDEMFQTESARAQRRGT---RLAVALLDIDHFKKLNDSLGHKG 503 Query: 151 GDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQ 207 GD + L+ ++V P V R GGEEF G ++ + A++ L++ + + Sbjct: 504 GDDALVHLA-KVVRQHLRPQDVLARYGGEEFVILLPETGDTDAQQALVR--LQREL-TRE 559 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 ++ I IT SAG+ E + + + RAD A+Y AK++GRNRV+ Sbjct: 560 FFMAEMQKIVITFSAGVTRLAEGESLESALKRADGAMYQAKQAGRNRVMV 609 >gi|207728332|ref|YP_002256726.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] gi|206591578|emb|CAQ57190.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] Length = 677 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 91/171 (53%), Gaps = 12/171 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPV 150 +Y ++ L D L+GL N +AFI L + + ++++ +D+FK +N+ GH + Sbjct: 244 TYEQLRLLETKDSLTGLPNRAAFIERLDARLALPSTGQAALLYVGLDHFKTVNEAMGHHI 303 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 G++V+ + ++ G + RLGG++F A + ++A LA +I++ Sbjct: 304 GNQVLNVAAHRIRADVGQRALLARLGGDQFCVAI--DAPEQAETLAQ---QILDALAKPF 358 Query: 211 SSGP-SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 G +H++ S G+A +T++ RA+ A+Y AK++GRNR+ +S Sbjct: 359 PGGEREVHLSASVGVAMFPEDGSDAATLVSRAEAAMYRAKENGRNRMARYS 409 >gi|116048784|ref|YP_792416.1| hypothetical protein PA14_53140 [Pseudomonas aeruginosa UCBPP-PA14] gi|115584005|gb|ABJ10020.1| hypothetical protein PA14_53140 [Pseudomonas aeruginosa UCBPP-PA14] Length = 823 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 17/177 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151 R+S + D L+GL N F L E+L +++F D+D FK +ND GH G Sbjct: 374 RLSWQATHDALTGLTNRREFEYRLQIALERLERNSGRHALMFLDLDQFKLVNDTCGHAAG 433 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ + L + RLGG+EF ++A +A+ LRK +++ S Sbjct: 434 DELLRQVCTLLQQGLREGDTLARLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWS 493 Query: 212 SGPSIHITISAGIAERCHKEP-ISTI---IYRADQALYVAKKSGRNRVVCF--SDIE 262 P + T+S G+ H P IST+ + AD A Y+AK+ GRNRV F D+E Sbjct: 494 GQP-FNCTVSVGLV---HLLPGISTLEEALRSADMACYMAKEKGRNRVQVFHQDDVE 546 >gi|90420642|ref|ZP_01228549.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1] gi|90335370|gb|EAS49123.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1] Length = 580 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 100/216 (46%), Gaps = 30/216 (13%) Query: 55 LTPFYGLEYILVENLS--LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112 L P G +Y + L L +++ I L L + L+E + +++ D L+GL Sbjct: 367 LEPRDGEDYDPNQTLEIYLKMLAENIGLALANLR---LRET------LREMAMADPLTGL 417 Query: 113 LNHSAFISSLG---SYNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 N A S + E+L S V DID+FK+ ND+ GH GD V+ + + L V Sbjct: 418 ANRRALDSRFAFEVAETERLGRSFSCVMLDIDHFKRFNDDHGHDAGDAVLRAVGETLTGV 477 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---GPSIHITISA 222 V R GGEEF G ++A +R+ I IN GP IT+S Sbjct: 478 TREAGMVFRYGGEEFVLLMPGLDCEQARERGEVVRQAINALTINHEGEVLGP---ITVSL 534 Query: 223 GIA---ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G+A E C + S ++ AD AL AK +GRNR+ Sbjct: 535 GLASAPEHCAR---SRLVQVADAALLEAKAAGRNRI 567 >gi|226942211|ref|YP_002797284.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ] gi|226717138|gb|ACO76309.1| GGDEF domain protein [Azotobacter vinelandii DJ] Length = 464 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 7/163 (4%) Query: 107 DCLSGLLNHS------AFISSLGSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ +LN A + NE+ +++ DID FK IND FGH GD V+ L+ Sbjct: 301 DVLTHMLNRKFLPVILAKEVAYARQNERSFAVLAVDIDRFKHINDEFGHEAGDVVLQQLA 360 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L +V R+GGEEF + ++ A +A LR+ + + + +T Sbjct: 361 SLLSNHCRGGDYVFRMGGEEFLVLLVDVTQAHALGVAEKLRQQAAQERFRLPGEQDLQLT 420 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +S G+A ++ +AD+ALY AK GRN+VV ++ Sbjct: 421 VSIGVALHDGHPDYQHLLRQADRALYEAKHGGRNQVVLARKLD 463 >gi|330967255|gb|EGH67515.1| GGDEF domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 424 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 198 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 247 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 248 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAYRYGG 307 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + E +R+ I N I N S P S+ + Sbjct: 308 EEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEASVSV 367 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 368 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 414 >gi|257482526|ref|ZP_05636567.1| PAS:GGDEF [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626594|ref|ZP_06459548.1| PAS:GGDEF [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649855|ref|ZP_06481198.1| PAS:GGDEF [Pseudomonas syringae pv. aesculi str. 2250] gi|298484695|ref|ZP_07002798.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160835|gb|EFI01853.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320326749|gb|EFW82794.1| oxidoreductase domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331277|gb|EFW87220.1| oxidoreductase domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330867966|gb|EGH02675.1| PAS:GGDEF protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330988029|gb|EGH86132.1| PAS:GGDEF protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012827|gb|EGH92883.1| PAS:GGDEF protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 332 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK +ND +GH GD V+ +++ GR+GGEEFAA G + Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVA 247 A +A L++ I+ S G + IT S G+ ++ + T+ RAD A+Y A Sbjct: 263 PDMAMQIAERLQREIQRQNFQ-SGGTTFSITASQGLTNLGPEDSSLETLYGRADAAMYQA 321 Query: 248 KKSGRNRVV 256 K+ G+N++V Sbjct: 322 KRQGKNQIV 330 >gi|209552242|ref|YP_002284157.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539354|gb|ACI59286.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 298 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 1/125 (0%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + DID FK IND GH GD V+ + ++ GR+GGEEF A G++ + Sbjct: 172 LAVLDIDNFKHINDRLGHHAGDLVLKDFAQRIHQHVRRSDCFGRVGGEEFVLAMPGTALE 231 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +A + + +I S+ ++ P T SAG+A ++ + + RADQALY AK Sbjct: 232 DAVEIIETMLTMIRFSR-PLTESPDFAYTCSAGVAASLREDTAAELYRRADQALYAAKLG 290 Query: 251 GRNRV 255 GR+RV Sbjct: 291 GRDRV 295 >gi|163802198|ref|ZP_02196093.1| hypothetical protein 1103602000603_AND4_17439 [Vibrio sp. AND4] gi|159174003|gb|EDP58813.1| hypothetical protein AND4_17439 [Vibrio sp. AND4] Length = 815 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 93/171 (54%), Gaps = 12/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL------GSYNEKL-SIVFFDIDYFKQINDNFGHPVG 151 ++ +++ D L+ L N + I+ L G N+ + + +F D+D+FK IND+ GH G Sbjct: 389 KLQRMAFYDPLTNLPNRTHLINLLEQHIENGHKNQHIFATLFLDLDHFKHINDSMGHFCG 448 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209 D+++ L ++L V V R+GG+EF L + + E+ ++ + + I+ N Sbjct: 449 DQLLTKLGERLQDVLHLRAHVARIGGDEF-VVVLPNIDSESQLI-DTIEDILSLFNHPFE 506 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S+ S+ I+ S G+A + T++ AD A+Y+AKK+GRN +S Sbjct: 507 VSNNESLRISTSIGVARYPQDGQDSETLLKNADTAMYLAKKNGRNGYAFYS 557 >gi|78356844|ref|YP_388293.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219249|gb|ABB38598.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 157 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 2/128 (1%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + D+D FK +ND +GHP GD+V+ ++ L R GGEEFA G+S Sbjct: 1 MAALDLDDFKAVNDVYGHPCGDEVLVHVAHHLASGKRAYDVAARTGGEEFALILPGASAV 60 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAK 248 A ++ L + + + + +HIT SAG+A P S ++ AD+ALY AK Sbjct: 61 TARLMVERLLAALRAAPVRCAGTGPLHITFSAGVAVCKGSIPCSAEKLMAFADEALYEAK 120 Query: 249 KSGRNRVV 256 ++G+NRV+ Sbjct: 121 RAGKNRVM 128 >gi|332991574|gb|AEF01629.1| putative response regulator [Alteromonas sp. SN2] Length = 319 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 3/131 (2%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 LS+V FD+D FK+ ND +GH GD + LS + PM + R+GGEEF + Sbjct: 175 LSLVLFDVDDFKRFNDRYGHMEGDSCLWRLSKAINDSLLRPMDKLVRVGGEEFLVILPST 234 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALY 245 ++ A ++AN L + + N I + +TISAG+A + + I + +AD++LY Sbjct: 235 DKKGAKLVANRLLETVFNLNIPHADSNLARVTISAGVATKNPDDNKTIDFTMLQADKSLY 294 Query: 246 VAKKSGRNRVV 256 AK GRN VV Sbjct: 295 AAKGQGRNCVV 305 >gi|304310088|ref|YP_003809686.1| response regulator with GGDEF domain [gamma proteobacterium HdN1] gi|301795821|emb|CBL44020.1| response regulator with GGDEF domain [gamma proteobacterium HdN1] Length = 462 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 81/172 (47%), Gaps = 17/172 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 Y+ + +LSR D L+ L N F S + LSI D+D+FKQ ND +GH Sbjct: 285 YHNLERLSREDALTELANRRHFGECLQHEWSRCQRDQKPLSIALLDVDFFKQYNDIYGHQ 344 Query: 150 VGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQ 207 GD+ + ++ L P VGR GGEEF + +EQ AIL +I + Sbjct: 345 AGDRCLIAIAQALRKEASRPGELVGRYGGEEFILLYPNTQAEQFLAILERIQERIRALAL 404 Query: 208 INISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNR 254 + S + +TIS G A H E +I AD LY AKK+GRNR Sbjct: 405 AHEGSRVAKTVTISIGAATVLPTRAAHTE---KLIGLADTLLYRAKKNGRNR 453 >gi|299533475|ref|ZP_07046855.1| diguanylate cyclase [Comamonas testosteroni S44] gi|298718532|gb|EFI59509.1| diguanylate cyclase [Comamonas testosteroni S44] Length = 398 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 87/165 (52%), Gaps = 10/165 (6%) Query: 107 DCLSGLLNHSAFISSLGSY--NEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ LLN AF+ + S +++L ++V DID+FK INDN+GH GD+V+ L+ Sbjct: 230 DSLTRLLNRRAFMEAAESRLADQRLVPWAVVAVDIDHFKYINDNWGHAAGDQVLQQLAQL 289 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF L S Q EA + +R+ ++ SQ+ + +T Sbjct: 290 LTQQVRDCDLVARFGGEEF--VLLLSRVQLFEAQAIVERVRERLQ-SQVLGGLAAQLRVT 346 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 S GIA + + + RAD LY AKK+GR+ V+ + E+ Sbjct: 347 ASFGIAALSSAQDLEQALARADALLYQAKKAGRDCVMSSAQDESE 391 >gi|256829884|ref|YP_003158612.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gi|256579060|gb|ACU90196.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] Length = 290 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 14/171 (8%) Query: 101 SQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 QL+ D L+GL N ++F L ++ L+++F DID FK IND++GH +GD Sbjct: 122 QQLALQDVLTGLPNRASFEQGLAHGLIQAKRHDWGLAVLFIDIDKFKNINDSYGHDMGDH 181 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL-RKIIENSQINIS 211 V+ L+++L V R GG+EF L E + +A L +I E + N Sbjct: 182 VLRTLANRLKSFVRGADMVSRWGGDEFVCLLLEVKQESDVTRIAEQLVTRIAEPCEFN-- 239 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDI 261 G + IT S GIA I+++ AD A+Y AK S +NRVV F I Sbjct: 240 -GTVLSITSSIGIAMYPEDGKTVDILFKNADMAMYEAKGS-KNRVVLFRTI 288 >gi|254252174|ref|ZP_04945492.1| hypothetical protein BDAG_01390 [Burkholderia dolosa AUO158] gi|124894783|gb|EAY68663.1| hypothetical protein BDAG_01390 [Burkholderia dolosa AUO158] Length = 494 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S L+EL + ++ ++ D ++G N FI+ + ++ D+D FK Sbjct: 317 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIVRAERDGTPFCLLALDLDNFK 376 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH +GD+V+ + Q + + R+GGEEF A + A + A +R Sbjct: 377 HINDAYGHQIGDEVLRGVVRQCLEAIRPAGGLARVGGEEFMALLPEMPLEGARMTAERVR 436 Query: 201 KIIENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I ++ + + +T+S G+A+ + ++ D+ LY AK+ GRNRVV Sbjct: 437 SSIASAPFGLDFK-RVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKREGRNRVVA 493 >gi|160899485|ref|YP_001565067.1| diguanylate cyclase [Delftia acidovorans SPH-1] gi|160365069|gb|ABX36682.1| diguanylate cyclase [Delftia acidovorans SPH-1] Length = 356 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 23/186 (12%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------------ISSLGSYNEKLS---IVFFDI 136 ++ +Y + S D L+GLLN F ++ G E + + DI Sbjct: 159 VYHNYQSLLDYSERDALTGLLNRKTFDEQFLRLSLQEAPMAMPGVATEDVPGQWLAAIDI 218 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+IND FGH GD+V+ +++ L F V R GGEEF S A Sbjct: 219 DHFKRINDRFGHLYGDEVLILVANILRSCFDAKDRVFRFGGEEFVVLLRSVSLVNARKAL 278 Query: 197 NDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 LR +E+ + P + IT+S G A P+ ++ ADQALY AK+ GRN+ Sbjct: 279 ERLRHDVESYEF-----PQVGRITVSTGFAAMGTGAPVE-VLGHADQALYHAKEHGRNQT 332 Query: 256 VCFSDI 261 + D+ Sbjct: 333 WYYGDL 338 >gi|86739084|ref|YP_479484.1| diguanylate cyclase [Frankia sp. CcI3] gi|86565946|gb|ABD09755.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Frankia sp. CcI3] Length = 1340 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 6/155 (3%) Query: 104 SRIDCLSGLLNHSAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 +R D L+GL N +AF L + ++++F D+D FK +ND FGH GD+V+ +S Sbjct: 456 ARHDVLTGLCNRTAFEEQLEDALAAAGGVAVLFIDLDSFKPVNDTFGHAAGDRVLQVISG 515 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 ++ + G GR GG+EF L ++E A +A R I + + G + + Sbjct: 516 RIRTLLGPDDVAGRFGGDEFGVLLLRANEIAARTMAG--RVIRAVREPILVDGYEVCVAA 573 Query: 221 SAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254 S G+A + S + R AD+A+Y AK++G R Sbjct: 574 SIGVALAVSRPSHSGRLLRAADEAMYKAKQAGPGR 608 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 107 DCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N +A F+ L +++ D+D FK IND FGH VGD V+ ++ +L Sbjct: 1131 DPLTGLPNRAALTEFLDQLAREQTPFAVLLIDLDDFKPINDTFGHQVGDDVLCTVATRLA 1190 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSE 189 V V G E AL E Sbjct: 1191 DVLAPGPSVASAGPVEPIGPALIDPE 1216 >gi|78062448|ref|YP_372356.1| diguanylate cyclase [Burkholderia sp. 383] gi|77970333|gb|ABB11712.1| diguanylate cyclase [Burkholderia sp. 383] Length = 492 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 10/188 (5%) Query: 80 LLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIV 132 ++L ++ G+ L+ + + + L+R D L+GL N +F L + S++ Sbjct: 300 IVLSFMLGTQLRRRMRAESELVMLARTDGLTGLNNRRSFGEVLDLEWRRARRARSVFSLL 359 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQE 191 F D+D FK ND +GH GD + ++ + P R GGEEF + Sbjct: 360 FVDVDRFKAFNDTYGHQAGDDALTAVARCIGDNIRRPADTAARYGGEEFVVILPDTPATG 419 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKK 249 A +A +R I+ I + +T S G+A ++ + ++I AD+ALY AK+ Sbjct: 420 ATEIAERIRAAIDGLAIEHAESEFGRVTASIGVASWAPEQEGEVESVIKAADEALYHAKE 479 Query: 250 SGRNRVVC 257 +GRN+V Sbjct: 480 TGRNKVAS 487 >gi|148265765|ref|YP_001232471.1| diguanylate cyclase [Geobacter uraniireducens Rf4] gi|146399265|gb|ABQ27898.1| diguanylate cyclase with GAF sensor [Geobacter uraniireducens Rf4] Length = 681 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 13/168 (7%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +LS D L+GL N + L + L+ +F D+DYFK ND GH GD+ Sbjct: 499 EKLSVTDPLTGLYNRRFLKNRLEEELNRSVRHGLNLTFLFIDLDYFKIYNDFCGHLAGDE 558 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISS 212 + +D + V R GGEEF A G+S++E+ ++A +R IE S Sbjct: 559 ALKKTADIIKASLRDMDIVARYGGEEFCAILPGTSKKESIVVAERIRVGIEKEIFPEEES 618 Query: 213 GPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 P +T S GIA E H +++++ AD ALY AK +GRN+++ Sbjct: 619 LPLGKLTASLGIASFPEDGH--TFTSLVHAADVALYEAKANGRNQIIA 664 >gi|330965717|gb|EGH65977.1| GGDEF domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 398 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 23/216 (10%) Query: 62 EYILVENLSLVIISITISLLLGYI---SGSILKELFISYNRISQL-----SRIDCLSGLL 113 ++++ + +L+ +S + LL+ S L LF R+ Q+ +R D L+ L Sbjct: 184 DFVIWQANALLFVSTVMLLLMASYFLERASRLSYLFALRGRLLQVQLLEFARTDALTRLF 243 Query: 114 NHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 N L S E+ ++I+ DID+FK NDN+GHP GD + L + Sbjct: 244 NRRYQDEVLTSVWERARKKPANVAIILLDIDHFKSYNDNYGHPQGDVCLKLLCKAIQQSA 303 Query: 167 GTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGI 224 V R GGEE + + +A +A L+ + ++ + + G H+TIS G+ Sbjct: 304 NDGGAVAFRFGGEE-VLVLMNADAGQATKMAETLKATVAALKLPHPALGEDAHVTISLGV 362 Query: 225 AERCHKEPI---STIIYRADQALYVAKKSGRNRVVC 257 A P+ T+I AD ALY AK +GRN V C Sbjct: 363 AS--GIAPLITYDTLISAADNALYAAKHAGRNCVFC 396 >gi|317470731|ref|ZP_07930116.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901866|gb|EFV23795.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 483 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 16/154 (10%) Query: 107 DCLSGLLNHSAFISSLGS---YNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G++N F L N+K FF D+D FK+IND +GH GD+V+ ++ L Sbjct: 336 DVLTGVINRKYFQKLLEKDLKRNKKYRACFFLDVDDFKRINDTYGHQKGDEVLTAVARHL 395 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILANDLRKIIENSQINISSGPSIHITI 220 V R GG+EF G +E+E I LR++ +H+ I Sbjct: 396 EKNLREKDVVSRYGGDEFTCLIYGITEKEKIREIAGRILREVT----------GKVHVNI 445 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 S GI + II RAD ALY AK G+N+ Sbjct: 446 SMGITLIQDNDSYEQIIERADGALYEAKVRGKNQ 479 >gi|308049288|ref|YP_003912854.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] gi|307631478|gb|ADN75780.1| diguanylate cyclase [Ferrimonas balearica DSM 9799] Length = 732 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 12/185 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 +L + +++Q + D L+G N F S + L++ DID+FK IND Sbjct: 542 QLEAANQKLAQQAHRDGLTGAYNRRYFDLSFEVARQHCVRSGSHLALALIDIDHFKSIND 601 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 + GH VGD + L + FG + + R GGEEF S E LR+ + Sbjct: 602 SHGHLVGDDCLKNLVSLIHRYFGRKLDLLARYGGEEFVLLLPQSDADEVLRRLESLRRTV 661 Query: 204 ENSQINISS-GPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S ++ S+ G ++ITIS G + + S + AD ALY AK GRNR +C ++ Sbjct: 662 AQSAVSESADGEPLYITISIGVLVTHPQYSSQQSDWLMAADSALYQAKSGGRNR-LCRAE 720 Query: 261 IENNT 265 + + Sbjct: 721 TSDQS 725 >gi|296449497|ref|ZP_06891274.1| probable signaling protein [Clostridium difficile NAP08] gi|296878180|ref|ZP_06902195.1| probable signaling protein [Clostridium difficile NAP07] gi|296261561|gb|EFH08379.1| probable signaling protein [Clostridium difficile NAP08] gi|296430933|gb|EFH16765.1| probable signaling protein [Clostridium difficile NAP07] Length = 838 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 13/165 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150 NR+ + D L+ + N +A+I L + N + +++ DIDYFK IND +GH V Sbjct: 675 NRLLDKVQRDSLTNIYN-AAYIRKLTAQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLV 733 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209 GDK++ ++ L F VGRLGG+EF+ E I ND+ I I Sbjct: 734 GDKILIDVAKVLDESFTKDDIVGRLGGDEFSVYINDIINNEELINKCNDVYNRIH--LIK 791 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +G S+ I++ IA +C +E + AD ALY +K+ GRNR Sbjct: 792 LPNGKSLSISMGVVIA-KCGQE-YDELYQIADNALYDSKREGRNR 834 >gi|294141998|ref|YP_003557976.1| sensory box protein [Shewanella violacea DSS12] gi|293328467|dbj|BAJ03198.1| sensory box protein [Shewanella violacea DSS12] Length = 1018 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 21/174 (12%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 I + + D L+GL N + LG+ + L+++F D+DYFK++ND GH VGD Sbjct: 577 IWKQANYDPLTGLPNRRMLLEYLGTELLKSDRNKQHLALMFLDLDYFKEVNDTLGHDVGD 636 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIE-----N 205 ++ + +L V RLGG+EF +A+ + + AN L ++ E N Sbjct: 637 LLLVETAKRLKSCIRESDVVARLGGDEFTLVLSAIDDHKGVDRVAANILTRLSEPFNLGN 696 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 IS+ SI IT+ A I +++ ADQA+Y AK GRNR F+ Sbjct: 697 DTAFISA--SIGITLYPDDA-----SSIESLLKHADQAMYAAKDLGRNRFHYFT 743 >gi|217969943|ref|YP_002355177.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T] gi|217507270|gb|ACK54281.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T] Length = 472 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 9/163 (5%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N F ++ G +L ++ FD+D FK IND+FGH GD+V Sbjct: 286 ELAERDELTGLYNRRRFHEELGRMLADAGRRGSRLGLLAFDLDGFKPINDSFGHQAGDEV 345 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + L+ +L + R+GG+EFA S + LA+ L + + + + G Sbjct: 346 LVRLARELGRTVRRNETLFRIGGDEFALLVPEGSTEGLCELAHRLVETVGAMRF-VFEGR 404 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +T S GIA + ++ AD+ALY AK GRNR Sbjct: 405 AARVTASVGIARFPDNAREGEALVAAADEALYRAKSEGRNRAA 447 >gi|148358610|ref|YP_001249817.1| GGDEF/EAL domain-containing sensory box protein [Legionella pneumophila str. Corby] gi|148280383|gb|ABQ54471.1| sensory box protein, EAL domain, GGDEF domain, signal transduction protein [Legionella pneumophila str. Corby] Length = 371 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 25/224 (11%) Query: 48 IFLFYIGLTPFYGL--EYIL-VENLS-LVIISITISLLLGYISGS-----ILKE----LF 94 +F FYI P Y + EY+ ++N + L I ++ ++L ++ + +LKE L Sbjct: 143 VFEFYI---PIYSISQEYVFFLDNTNHLFIFALIFTVLYHFLVQNSQYELLLKEQNYLLI 199 Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFG 147 + LS D L+ L N F + L + E +++ F D+D FK IND +G Sbjct: 200 ADKEKFHYLSHHDSLTNLPNRPYFHAHLQTLLENTDTKKEAITLYFMDLDKFKPINDEYG 259 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+++ S +L F F+ RLGG+EF A + A A LR E Q Sbjct: 260 HEFGDQLLLLTSKRLQSCFRKNDFIARLGGDEFTAIIVHKPLDHIA-EALTLRIEQEFEQ 318 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250 + +G +IH TIS GIA + ++ AD+A+Y K+ Sbjct: 319 PFVINGQTIHCTISVGIANYPRNAKNAEDLLKWADKAMYDNKRK 362 >gi|186473289|ref|YP_001860631.1| diguanylate cyclase [Burkholderia phymatum STM815] gi|184195621|gb|ACC73585.1| diguanylate cyclase [Burkholderia phymatum STM815] Length = 505 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 12/204 (5%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 L +Y + + V S +IS+ + L +I+ ILK L ++ +L+ D L+GL N Sbjct: 295 LDDYYRMRRVYVTMAS--VISLILVGLSTWIAALILK-LLKGREQLHRLAHTDRLTGLSN 351 Query: 115 HSAFISSLGSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 + L +++ +F D+D FK++ND FGH +GD ++ ++ +L V Sbjct: 352 RGCIMDLLDEAVAAPDAVGRVAAIFVDLDRFKELNDTFGHHLGDTILVEIARRLKEVAQG 411 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 GRLGG+EF + G E A I+A + +E+ + G + + S GIA Sbjct: 412 RAQTGRLGGDEFLVVS-GDGEASARIIAEAITAALESPV--VVHGHAYRVCASLGIAVLQ 468 Query: 229 HKEPISTIIYRADQALYVAKKSGR 252 E + ++ AD+ +Y AK+ R Sbjct: 469 RGERAADLVKAADRVMYEAKERSR 492 >gi|114047809|ref|YP_738359.1| diguanylate cyclase [Shewanella sp. MR-7] gi|113889251|gb|ABI43302.1| diguanylate cyclase [Shewanella sp. MR-7] Length = 726 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 8/138 (5%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184 + +++V D+DYFK++ND +GH GD+ + +++ L F + + R GGEEF Sbjct: 586 QDAIAVVLLDLDYFKKVNDTYGHLAGDECLRVMAEVLSRHFKRDVDLLCRYGGEEFILIL 645 Query: 185 LGSSEQEAAILANDLRK-----IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 + + ND R+ II N ++ S+ ++I A IA+ + + + + Sbjct: 646 PMCNSLKVEQHLNDFREKLASVIITNPADQVTF--SVTVSIGAIIADATYSTTLDVWLKQ 703 Query: 240 ADQALYVAKKSGRNRVVC 257 AD+ LY AK+ GRNRVVC Sbjct: 704 ADENLYKAKEQGRNRVVC 721 >gi|91778026|ref|YP_553234.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans LB400] gi|91690686|gb|ABE33884.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans LB400] Length = 689 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 15/167 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +I +L+ +D L+GL N + I +++F D+D FK IND+ GH Sbjct: 253 GQIVRLATLDSLTGLPNRATLTERIEHAIHRAQRQRSLCAVLFMDLDGFKTINDSLGHSA 312 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQI 208 GD+V+ + +L++ V RLGG+EF A LGS E A+ ++E ++ Sbjct: 313 GDQVLTAFAQRLLLCVRASDTVARLGGDEFVVLAEDLGSREDAGALAEG----VLERMRM 368 Query: 209 NI-SSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 + + + + S GIA H + + +++ AD A+Y AK++GR+ Sbjct: 369 GMWTDSQPLQVMPSIGIALFPHDGDTVDSLLKNADAAMYEAKRAGRS 415 >gi|330874805|gb|EGH08954.1| GGDEF domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 432 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 206 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 255 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 256 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAYRYGG 315 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + E +R+ I N I N S P S+ + Sbjct: 316 EEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEASVSV 375 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 376 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 422 >gi|241763941|ref|ZP_04761983.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] gi|241366764|gb|EER61205.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] Length = 741 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 24/181 (13%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----------KLSIVFFDI 136 S +++ RI L+ D L+GL N + LG E L++VF D+ Sbjct: 299 SEIRDRKADQERIYWLAHYDALTGLPNRTL----LGERAEHAIRLARESGTPLAVVFLDL 354 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK +ND+ GH VGD ++ ++ +L V V RLGG+EF G++ AA +A Sbjct: 355 DHFKHVNDSLGHRVGDALLVEIARRLRAVVREKDTVCRLGGDEFVLLLPGANAHGAARVA 414 Query: 197 NDL----RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 L R+ + ++ PS+ I + G E T+ AD A+Y AK GR Sbjct: 415 GKLQEASRQYYQIDHHELTMAPSMGIALFPGDG-----EDFDTLTQSADVAMYQAKLDGR 469 Query: 253 N 253 N Sbjct: 470 N 470 >gi|237734056|ref|ZP_04564537.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382882|gb|EEO32973.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 477 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N + Y + + DID FK+IND +GHP+GD ++ + L Sbjct: 324 DSLTGLYNRRKLTEEIKRYLKAQSEFGLAILDIDDFKKINDTYGHPIGDIILKEIGQILR 383 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISA 222 G VGRLGG+EF L + Q I+ L ++I I P I +T S Sbjct: 384 DNLG-EYLVGRLGGDEF--VILIENVQIINIVIQKLELTCNQIAKIKIEEHPDIVVTCSC 440 Query: 223 GIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 G+A E ++ + AD ALY+AK G+N++ F Sbjct: 441 GLAVAPKDGETVAELYKAADSALYIAKSLGKNKLAKF 477 >gi|288573406|ref|ZP_06391763.1| diguanylate cyclase with extracellular sensor [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569147|gb|EFC90704.1| diguanylate cyclase with extracellular sensor [Dethiosulfovibrio peptidovorans DSM 11002] Length = 499 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 12/166 (7%) Query: 98 NRISQLSRIDCLSGLLNH---SAFISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ LS++D L+G+ N AF++ + D+D+FK++ND++GH +G Sbjct: 323 RRLELLSKMDHLTGIANRFGIEAFLNRAVHKARRGTPFCVAIGDVDHFKRVNDDYGHQIG 382 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ L++ V VGR GGEEF E++ +A+ +R+I+ + + Sbjct: 383 DRVLVRLAEIFVDAVRAVDLVGRWGGEEFIIVFDDMVERDLFPVADRIRRIVSENDFGLG 442 Query: 212 SGPSIHITIS-AGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 +T+S G+A + ++ ++ AD ALY AK+ GRN V Sbjct: 443 R----PLTVSFGGVAFPAEGDLSLNDLLRTADDALYKAKEDGRNMV 484 >gi|167756071|ref|ZP_02428198.1| hypothetical protein CLORAM_01591 [Clostridium ramosum DSM 1402] gi|167704063|gb|EDS18642.1| hypothetical protein CLORAM_01591 [Clostridium ramosum DSM 1402] Length = 477 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N + Y + + DID FK+IND +GHP+GD ++ + L Sbjct: 324 DSLTGLYNRRKLTEEIKRYLKAQSEFGLAILDIDDFKKINDTYGHPIGDIILKEIGQILR 383 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISA 222 G VGRLGG+EF L + Q I+ L ++I I P I +T S Sbjct: 384 DNLG-EYLVGRLGGDEF--VILIENVQIINIVIQKLELTCNQIAKIKIEEHPDIVVTCSC 440 Query: 223 GIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 G+A E ++ + AD ALY+AK G+N++ F Sbjct: 441 GLAVAPKDGETVAELYKAADSALYIAKSLGKNKLAKF 477 >gi|119896980|ref|YP_932193.1| GGEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72] gi|119669393|emb|CAL93306.1| GGEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72] Length = 818 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 12/165 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +L+ D L+ L N + + E L+++F DID FK +ND+ GHPVG Sbjct: 386 RLQRLAHYDALTDLPNRVLLNLRLAHGVERVQRSGEMLAVLFLDIDRFKNVNDSLGHPVG 445 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209 D+++ ++ +L + RLGG+EF L + A +A+ ++II+ N Sbjct: 446 DELLIEIARRLRSRIRAEDTLARLGGDEF--VILLDRIRSANDVADFAQEIIDLLNQSFQ 503 Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 ++SG + + S GI+ + + +I AD ALY AK++GRN Sbjct: 504 LASGQEVFVGASIGISLYPLDTDDATQLISNADAALYQAKEAGRN 548 >gi|170736347|ref|YP_001777607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia cenocepacia MC0-3] gi|169818535|gb|ACA93117.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia cenocepacia MC0-3] Length = 667 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 17/186 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDID 137 SG + E + R+++L+ D L+GL N H+A + + I+F D+D Sbjct: 218 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIHAAIAEEDANTRGHVGILFLDLD 277 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193 FK++ND++GH GD+++ +S + + + RLGG+E F A E A Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEHATRPLLEATAQ 337 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I+ LR I + + + SI I + H + + T+I AD A+YVAK+ G++ Sbjct: 338 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRSADTAMYVAKEEGKH 392 Query: 254 RVVCFS 259 FS Sbjct: 393 TYRVFS 398 >gi|145226093|ref|YP_001136747.1| diguanylate cyclase [Mycobacterium gilvum PYR-GCK] gi|145218556|gb|ABP47959.1| diguanylate cyclase [Mycobacterium gilvum PYR-GCK] Length = 371 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 26/168 (15%) Query: 104 SRIDCLSGLLNHSAFISSLG--------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 S ID L+GLLN G S ++++ D+D FK +ND GH VGD+V+ Sbjct: 207 SSIDALTGLLNRRGLYLHFGDLLESNATSTEGTVTVIVVDLDRFKDVNDTHGHAVGDEVL 266 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + + G + R+GGEEFA ++ A A +R+ I + GP Sbjct: 267 VRSARLIAATSGRQALIARIGGEEFAIIDT-TTPSRGAETAEAVRRAIA------AGGPP 319 Query: 216 IHITISAGI--AERC-----HKEP---ISTIIYRADQALYVAKKSGRN 253 IT S GI A R ++ P + T+I RAD A++ AK++G N Sbjct: 320 -EITASVGITSANRTDFIASNERPQLVLDTVIARADHAMFCAKRNGGN 366 >gi|113970578|ref|YP_734371.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113885262|gb|ABI39314.1| diguanylate cyclase [Shewanella sp. MR-4] Length = 726 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 8/138 (5%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAA 184 + +++V D+DYFK++ND +GH GD+ + +++ L F + + R GGEEF Sbjct: 586 QDAIAVVLLDLDYFKKVNDTYGHLAGDECLRVMAEVLSRHFKRDVDLLCRYGGEEFILIL 645 Query: 185 LGSSEQEAAILANDLRK-----IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 + + ND R+ II N ++ S+ ++I A IA+ + + + + Sbjct: 646 PMCNSLKVEQHLNDFREKLASVIITNPADQVTF--SVTVSIGAIIADATYSTTLDVWLKQ 703 Query: 240 ADQALYVAKKSGRNRVVC 257 AD+ LY AK+ GRNRVVC Sbjct: 704 ADENLYKAKEQGRNRVVC 721 >gi|229142091|ref|ZP_04270616.1| Sensory box protein [Bacillus cereus BDRD-ST26] gi|228641380|gb|EEK97686.1| Sensory box protein [Bacillus cereus BDRD-ST26] Length = 735 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 355 RLGHGVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTALMKNADMAMYRAKANGKNRFVFFS 469 >gi|298528664|ref|ZP_07016068.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira thiodismutans ASO3-1] gi|298512316|gb|EFI36218.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira thiodismutans ASO3-1] Length = 305 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 Y SI+ DID FK IND GH GD+V+ +S+ L + R GGEEF Sbjct: 176 YGRLFSIILMDIDDFKDINDTLGHLAGDRVLYEMSNLLTANTRATDLLCRWGGEEFLLVC 235 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + LA +LR+++ + S ITIS G A ++ ++I RAD+A+ Sbjct: 236 PETDSSGVRPLAENLRQMVAGHEFECGS----RITISLGAATVRPEDTQDSMIARADKAM 291 Query: 245 YVAKKSGRNRVVC 257 Y++K G+N VC Sbjct: 292 YLSKSQGKN--VC 302 >gi|218665621|ref|YP_002426126.1| sensory box-containing diguanylate cyclase, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517834|gb|ACK78420.1| sensory box-containing diguanylate cyclase, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 1057 Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 22/231 (9%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLGYISGSI----LKE-LFISYNRISQLSRIDCLS 110 TPF +++I E + + L + S+ LKE L + + ++++R D L+ Sbjct: 544 TPFAVIKFISTEQVFDADTTTACERLASLLGHSLDEHDLKEHLRLLQEQEAKIARTDLLT 603 Query: 111 GLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 GL N I+ +N+ L++ D+D FK +ND +GH GD+V+ L +L Sbjct: 604 GLPNRRFLEIQMEQAIARAERHNQLLAVCMLDLDGFKPVNDTYGHGAGDEVLVALGKRLS 663 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITIS 221 FV RLGG+EF L ++ LAN ++KI + + I +S+G S+ I S Sbjct: 664 EALRKSDFVARLGGDEF--VLLVEDLEDLDDLANIMKKIEDTITAPIPLSNGKSVQIGAS 721 Query: 222 AGIAERCHKEPIS--TIIYRADQALYVAK--KSGRNR--VVCFSDIENNTC 266 G+A + + ++ ADQA+Y +K K+ R R V+ +++ C Sbjct: 722 MGVALYPFGDTDTGDKLLRLADQAMYESKANKAARERFWVLFGEEVQKEKC 772 >gi|148253069|ref|YP_001237654.1| hypothetical protein BBta_1531 [Bradyrhizobium sp. BTAi1] gi|146405242|gb|ABQ33748.1| hypothetical protein BBta_1531 [Bradyrhizobium sp. BTAi1] Length = 137 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 68/127 (53%) Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D+FK IND +GH GDKV+ + + +++ + R GG+EF + + Sbjct: 1 MDLDHFKAINDKYGHATGDKVLIYFARHIIMHLRPYDKIFRFGGDEFLIFMPDADLKAGR 60 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + LR+ + +I+ + +T+S G+ P+ I RAD ALYVAK GRN Sbjct: 61 DVVDRLREELGALRIDANGKEMFQVTVSFGLTLLDPDIPVEQSIDRADNALYVAKAMGRN 120 Query: 254 RVVCFSD 260 RV+ ++D Sbjct: 121 RVIVWND 127 >gi|119961555|ref|YP_946432.1| GGDEF domain-containing protein [Arthrobacter aurescens TC1] gi|119948414|gb|ABM07325.1| putative GGDEF domain protein [Arthrobacter aurescens TC1] Length = 392 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 11/167 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN AF+ + E+L S+V D+D+FK +ND GH GD + + Sbjct: 222 DHLTGLLNRGAFLDLATTELERLQSTGSGASVVLADLDHFKAVNDEHGHGAGDVALRAFA 281 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + + +GR GGEEF G+++ A +A+++ + + Q + + T Sbjct: 282 EACAGSVRSTDLIGRYGGEEFVLFLPGATQDRAENIASEISRRMAAMQ---TPEGVVFPT 338 Query: 220 ISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 +S G+ ++ +I AD ALY AK GRNR+V +E T Sbjct: 339 VSYGVTSSIPAVADLNFMIEVADAALYSAKAQGRNRIVGADRLEAAT 385 >gi|89055622|ref|YP_511073.1| response regulator receiver modulated diguanylate cyclase [Jannaschia sp. CCS1] gi|88865171|gb|ABD56048.1| response regulator receiver modulated diguanylate cyclase [Jannaschia sp. CCS1] Length = 464 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 6/137 (4%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ D+DYFKQIND +GH GD V+ ++ +L V R+GGEEF G+S Sbjct: 325 AVMMLDLDYFKQINDTYGHAAGDAVLQEVAIRLRGQVQANDLVARIGGEEFLVVLSGASA 384 Query: 190 QEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPIST-----IIYRADQA 243 + A A LR I ++ + +T S G++ +P +T +I++AD A Sbjct: 385 RAATECAERLRACIGGMSFDLGGDTFPVRVTASVGLSLPGSSDPHTTSTPEALIHKADTA 444 Query: 244 LYVAKKSGRNRVVCFSD 260 LY AK GR++V D Sbjct: 445 LYGAKAHGRDQVSQMCD 461 >gi|28898063|ref|NP_797668.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|260878413|ref|ZP_05890768.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] gi|260896992|ref|ZP_05905488.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|28806277|dbj|BAC59552.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087698|gb|EFO37393.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466] gi|308091230|gb|EFO40925.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AN-5034] Length = 381 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 13/174 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 +L + ++ LS D L+ L N + I +L + L + D DYFKQ+ND Sbjct: 194 QLLTANKQLEALSLTDSLTQLPNRRSAIKTLKKLWDDTEHKTLPLVCIMIDADYFKQVND 253 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD V+ L+ L F + V RLGG+EF + +A +RK + Sbjct: 254 TCGHEAGDLVLIELAQALKYHFRSDDIVCRLGGDEFFVICPDTGLDGGLHVAEMVRKQVS 313 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255 + P +IS G+AER E +ST +I AD+++Y+AK+ G+NRV Sbjct: 314 QMLVPTCYEP-WRGSISVGVAERT--ENMSTYTDLIRAADESVYLAKQEGKNRV 364 >gi|90421842|ref|YP_530212.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gi|90103856|gb|ABD85893.1| diguanylate cyclase (GGDEF domain) [Rhodopseudomonas palustris BisB18] Length = 350 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 14/165 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVG 151 +R L+ D ++GL N F S+L +E +++ D+D FK +ND FGH G Sbjct: 162 DRTRYLAEFDVVTGLANRGRFQSTLAQLDEAADARPFGALLLVDLDEFKAVNDCFGHAAG 221 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ + ++ G V R GG+EF A L S Q A ++ R IIE + I Sbjct: 222 DECLKQAGQRISKACGDARLVARFGGDEF--AVLLGSHQRFAEISEIARSIIEEMRRPIV 279 Query: 212 -SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 G + + S G+A + C S + AD+ALY AK++GR Sbjct: 280 FHGHELQLGASVGVALVDGC---TASQLFVMADKALYAAKEAGRG 321 >gi|291539940|emb|CBL13051.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis XB6B4] Length = 553 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 14/212 (6%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118 Y L + E ++ I+ LL Y+ + KE ++ Q++ D L+G+ N A Sbjct: 346 YSLRVHIQEKHETGELAAGINELLDYVEQADRKEKE-RQQKLLQMAENDPLTGIKNKKAI 404 Query: 119 ISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPM 170 + S +E+++ F DID F+ N N+GH GD VI F++ L + G Sbjct: 405 EKEMLSMVQRAVESHEQITFGFVDIDDFRDYNTNYGHQEGDAVIQFVAQTLKENIHGA-- 462 Query: 171 FVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIA-ERC 228 VGR+GG+EFA G E E A+ + +I+ +N +G + + S GI + Sbjct: 463 -VGRIGGDEFAFCYAGELEPERIRHNADKILEILRTQHVNEQTGEVLPVPCSIGIVMSQG 521 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +I +AD A+Y AK++G+N V D Sbjct: 522 DTLDYTQLIRKADLAMYQAKENGKNTFVLNVD 553 >gi|218885660|ref|YP_002434981.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756614|gb|ACL07513.1| diguanylate cyclase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 314 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 12/176 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 L+EL + ++ D L+GL+N AF+ + +L + D+D FK++ Sbjct: 110 LRELQKAVEELTHQRDHDPLTGLMNRRAFLRQVELELQRVHRGGAELCLAMLDLDDFKRV 169 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD V+ ++D L R+GGEEF G+S A L L + Sbjct: 170 NDTWGHACGDLVLRRMADLLRDATRAYDVAARIGGEEFVLLLPGASPMRAQALLERLLQD 229 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNRV 255 + + + I+ SAGIA C + ++ RAD+ALY AK SG+ RV Sbjct: 230 MRDETFECRD-ETFRISFSAGIAG-CKGATVCRAEELLDRADKALYEAKASGKARV 283 >gi|217962838|ref|YP_002341416.1| sensory box/GGDEF family protein [Bacillus cereus AH187] gi|217065154|gb|ACJ79404.1| sensory box/GGDEF family protein [Bacillus cereus AH187] Length = 604 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 27/184 (14%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 165 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 223 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + Sbjct: 224 RLGHGVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQI---- 279 Query: 204 ENSQINISSGP------SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +NI + P + IT S GIA C + ++ ++ AD A+Y AK +G+NR Sbjct: 280 ----LNILNKPFFIKDEELSITPSIGIAMYPDCGTD-VTALMKNADMAMYRAKANGKNRF 334 Query: 256 VCFS 259 V FS Sbjct: 335 VFFS 338 >gi|254429501|ref|ZP_05043208.1| GGDEF domain protein [Alcanivorax sp. DG881] gi|196195670|gb|EDX90629.1| GGDEF domain protein [Alcanivorax sp. DG881] Length = 342 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 9/167 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGH 148 +++R+S ++ D L+GL N F+ L + L + D+D+FK++ND +GH Sbjct: 174 AHDRLSAIAVRDDLTGLYNRRHFLERLEEEMSRANRESSPLHLAIIDLDHFKRVNDTYGH 233 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+V+ + + + R GGEEF +S Q LR + Sbjct: 234 HAGDEVLHRFAQLAAMGLRKSDLLARYGGEEFVVLFPHTSSQACLAALERLRHSFSEQRY 293 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + SAG+ E I RAD ALY AK GRNR+ Sbjct: 294 AFAG--ELSSAFSAGLTHYQPGESAEQFIKRADNALYEAKHLGRNRI 338 >gi|161521236|ref|YP_001584663.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616] gi|189352591|ref|YP_001948218.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616] gi|160345286|gb|ABX18371.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616] gi|189336613|dbj|BAG45682.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616] Length = 492 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 14/193 (7%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I +S+LLG + L+ + + + L+R D L+GL N +F L + Sbjct: 300 IALSVLLG----AQLRRRMRAESELILLARTDGLTGLNNRRSFGEVLDREWRRARRVRSV 355 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGS 187 S++F D+D FK ND +GH GD +A ++ + P V R GGEEF + Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPADVAARYGGEEFVVLLPDT 415 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALY 245 +E AA +A +R I + +T S G+A + + II AD+ALY Sbjct: 416 AENGAAQIAERIRIAINELGLEHVGSEFGRVTASIGLASWKPDQDVEPDAIIKAADEALY 475 Query: 246 VAKKSGRNRVVCF 258 AK +GRN+V F Sbjct: 476 YAKATGRNKVTQF 488 >gi|288871697|ref|ZP_06410269.1| putative response regulator/sensory box/GGDEF domain/EAL domain protein [Clostridium hathewayi DSM 13479] gi|288862380|gb|EFC94678.1| putative response regulator/sensory box/GGDEF domain/EAL domain protein [Clostridium hathewayi DSM 13479] Length = 290 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 20/177 (11%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------YNEKLSIVFFDIDYFKQINDN 145 E + +I Q ID L+GLL AF + + ++ D+D K +ND Sbjct: 114 EAIVEKQQIEQERDIDLLTGLLTRRAFFRTADQLFADPGRMKTAMLLMMDLDNLKHVNDT 173 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILANDLRKII 203 +GH GDK++ +D + RL G+EF G+ E+E A L L K I Sbjct: 174 WGHEYGDKLLKAAADLFAGLKAPEKVAARLSGDEFVLLIYGADEKEELYACLER-LEKSI 232 Query: 204 ENSQINISSGPSIHITISAG------IAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +++ + G I++S G + C + +++ ADQA+Y KKSG+ R Sbjct: 233 REARLALPEGGEAEISVSGGYLIYPEVGGDC-----TEMLHLADQAMYRVKKSGKGR 284 >gi|269959455|ref|ZP_06173838.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835892|gb|EEZ89968.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 836 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 12/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 ++ +++ D L+ L N + IS L + E + +F DID+FK IND+ GH G Sbjct: 410 KLQRMAFYDPLTNLPNRTHLISLLEQHIENGQKHQHAFATLFLDIDHFKHINDSMGHFCG 469 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209 D+++ L+++L V V R+GG+EF L + E ++ ++ + + I+ N Sbjct: 470 DQLLTKLAERLQDVLHLRAHVARIGGDEF-VIILPNIESDSQLI-DTIEDILCLFNRPFE 527 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S S+ I+ S G+A + T++ AD A+Y+AKK+GRN +S Sbjct: 528 VSKNESLRISTSVGVARYPQDGQDSETLLKNADTAMYLAKKNGRNGYAFYS 578 >gi|262173449|ref|ZP_06041126.1| hypothetical protein VII_000539 [Vibrio mimicus MB-451] gi|261890807|gb|EEY36794.1| hypothetical protein VII_000539 [Vibrio mimicus MB-451] Length = 314 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 19/174 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D LS L N F L +E L++V DID FK+ ND+FGH GD Sbjct: 135 LDKMAHTDSLSSLANRLKFDEQLNIEFKRSRRQSEPLTVVMIDIDEFKKFNDHFGHIAGD 194 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + I ++ L P R GGEEFA + E+ A + N+L +E Q+ I+ Sbjct: 195 ECIRKIAYTLRSTTKRPADLAARYGGEEFALILPSTEEEGAKSMVNELINAVE--QLEIA 252 Query: 212 SGPSIH---ITISAG----IAERCHKEPIST--IIYRADQALYVAKKSGRNRVV 256 P +T+S G E+ E + + AD ALY +K++GRN+ Sbjct: 253 HSPEAMNPCVTVSVGYTVLYPEQVDFEQLKAVDVAQTADNALYTSKRNGRNQAT 306 >gi|254506358|ref|ZP_05118501.1| intracellular signaling protein (pas,gaf,ggdef domains) [Vibrio parahaemolyticus 16] gi|219550838|gb|EED27820.1| intracellular signaling protein (pas,gaf,ggdef domains) [Vibrio parahaemolyticus 16] Length = 353 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 15/168 (8%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N + I + K ++ DID+FK +NDN GH +GD V+ ++ Sbjct: 185 DTLTGVANRRSLFKTVHLDIERMKRAGGKGTLAIVDIDHFKLVNDNHGHQIGDDVLKKVA 244 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-----IIENSQINISSGP 214 + F+ R GGEEF + +E + +R +++ I +S G Sbjct: 245 TAIQAQLVESDFIARFGGEEFVVWLPERALEERRSIIEKVRTCVNSILVDGQPITVSVG- 303 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV--CFSD 260 + S+ + ++C+K + II+ AD LY AK +GRN V C+S+ Sbjct: 304 ACEFDFSSLVNQQCNKATLDEIIHIADDNLYRAKDAGRNTTVRSCWSE 351 >gi|170749422|ref|YP_001755682.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] gi|170655944|gb|ACB24999.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] Length = 777 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 22/181 (12%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFK 140 GS + E S R+S L+ D L+ L N F + E+L+ ++ D+D FK Sbjct: 330 GSDVTEKRRSEERLSYLALHDSLTDLPNRVLFHQLQEAARERLAQGDRFAVLALDLDEFK 389 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND FGH GDK++ ++++L + + + RL G+EFA A G S A DL Sbjct: 390 SVNDTFGHAAGDKLLKSVAERLRSFEASDVQLARLAGDEFAVLATGRS-------ARDLH 442 Query: 201 KI--IENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 I + N + + P + +++S GIA ++ I+ RAD ALY K GR Sbjct: 443 AIEALANGIVEALASPFTIDGIRLTVSVSIGIAI-APQDGCQEIMRRADLALYRMKSEGR 501 Query: 253 N 253 N Sbjct: 502 N 502 >gi|118593589|ref|ZP_01550966.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Stappia aggregata IAM 12614] gi|118433807|gb|EAV40467.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Stappia aggregata IAM 12614] Length = 722 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 28/190 (14%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI +L+ +D ++ L N +F + + ++S++F D+D FK++ND++GH G Sbjct: 258 RIHELAYLDPVTRLPNRESFRLHFNSNMQTADGTPVRMSVLFIDLDRFKRVNDSYGHDHG 317 Query: 152 DKVIAFLSDQLVVVFGT-----------PMFVGRLGGEEFAAAALGSSEQEAA---ILAN 197 D ++ ++ +L + + P V RLGG+EFA +E+ A LA+ Sbjct: 318 DALLKEVASRLRRLLNSADRAGEAPPAFPPLVARLGGDEFAIVI--PAEKPMANVYTLAD 375 Query: 198 DLRKIIENS-QINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRV 255 +L + +E +IN G ++ + S G++ E + I+ AD A+Y AK++G NR Sbjct: 376 ELVQCVEQPLEIN---GLTMAVGASIGVSTYPDDGEDYTAILKNADIAMYAAKRTGGNRA 432 Query: 256 VCFSDIENNT 265 F++IE ++ Sbjct: 433 CFFNEIERDS 442 >gi|116691653|ref|YP_837186.1| RNase II stability modulator [Burkholderia cenocepacia HI2424] gi|116649653|gb|ABK10293.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia HI2424] Length = 667 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 17/186 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDID 137 SG + E + R+++L+ D L+GL N H+A + + I+F D+D Sbjct: 218 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIHAAIAEEDANTRGHVGILFLDLD 277 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193 FK++ND++GH GD+++ +S + + + RLGG+E F A E A Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEHATRPLLEATAQ 337 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I+ LR I + + + SI I + H + + T+I AD A+YVAK+ G++ Sbjct: 338 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRSADTAMYVAKEEGKH 392 Query: 254 RVVCFS 259 FS Sbjct: 393 TYRVFS 398 >gi|313682449|ref|YP_004060187.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313155309|gb|ADR33987.1| diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 250 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 23/193 (11%) Query: 90 LKELFISYN-----RISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDID 137 L E+ + Y+ +LS D L+ L N F L + EK LS + DID Sbjct: 57 LGEVLVRYDITEKKNFEKLSITDSLTELYNRRYFNDILTREIYRATREKSTLSFIILDID 116 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 YFK+ ND +GH GDK + ++ + + F RLGGEEF G +++++ A Sbjct: 117 YFKKYNDTYGHYAGDKALTIVASTIKNSLHRGGDFAFRLGGEEFGIIFSGLNKEQSLEFA 176 Query: 197 NDLRKIIENSQI-NISSGPSIHITISAG------IAERCHKEPISTIIYRADQALYVAKK 249 ++ IE+ I + +S S HITIS G + E + T+ AD ALY AK+ Sbjct: 177 EQIKANIEDLNIPHSNSAVSSHITISLGLVVIDFVNEYVDENGFYTM---ADSALYRAKE 233 Query: 250 SGRNRVVCFSDIE 262 +GRN+V+ + E Sbjct: 234 TGRNKVIMHENEE 246 >gi|296132516|ref|YP_003639763.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola sp. JR] gi|296031094|gb|ADG81862.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola potens JR] Length = 1349 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 75/131 (57%), Gaps = 6/131 (4%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 NE L+++F D+D FK +ND GH +GD+++ ++ +L + + RLGG+EF Sbjct: 950 NEMLAVMFLDLDRFKLVNDMLGHSIGDRLLQEVAKKLSICLRKGDTIARLGGDEFTLLLP 1009 Query: 186 G-SSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQ 242 SE+EAA +A +KI++ Q ++ SG +IT S G+A E ++ AD Sbjct: 1010 QIKSEKEAAKIA---QKILKAFQKPVTLSGHEFYITASIGVALYPSDGEKAEILMKNADT 1066 Query: 243 ALYVAKKSGRN 253 A+Y AK+ GRN Sbjct: 1067 AMYRAKEQGRN 1077 >gi|260775416|ref|ZP_05884313.1| hypothetical protein VIC_000790 [Vibrio coralliilyticus ATCC BAA-450] gi|260608597|gb|EEX34762.1| hypothetical protein VIC_000790 [Vibrio coralliilyticus ATCC BAA-450] Length = 648 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 7/171 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKV 154 N+ + + ID L+GL N F L +NE L +++ DID FK IND+ GH +GDKV Sbjct: 216 NKPLEDAHIDSLTGLYNRFGFTKRLEQFIHNETPLLLLYLDIDNFKNINDSLGHHIGDKV 275 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSG 213 I +S +L + VG LGG+EF + + A ILA + +I N ++ Sbjct: 276 IKEVSSRLKRLLPQHAVVGHLGGDEFGLILPEPENNRMAEILAERIISLI-NQPFDLHHF 334 Query: 214 PSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S + S G + ++ AD A+Y AK GRNR++ F+D N Sbjct: 335 -SKRLACSIGSVTYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMN 384 >gi|260596361|ref|YP_003208932.1| hypothetical protein CTU_05690 [Cronobacter turicensis z3032] gi|260215538|emb|CBA27722.1| hypothetical protein CTU_05690 [Cronobacter turicensis z3032] Length = 327 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 13/159 (8%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ D L+G+ N F S+L E SI++FD+D FK IND +GH GD+V+ Sbjct: 171 MAMTDSLTGIPNRRGFYRSGEKRFSALQENTEPFSILYFDLDRFKPINDLWGHAEGDEVL 230 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + QL G GRLGG+EF A L + E++ N+LR ++ N +G Sbjct: 231 KVFASQLRQHLGPKDIAGRLGGDEF--AVLLTRERDTQPFLNNLRASLDAH--NQRAGKP 286 Query: 216 IHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGR 252 +I S G+ R + + +I +D +Y K+ R Sbjct: 287 YNINYSYGMLHRDSGSYDSLLEMIKESDNVMYSEKRRKR 325 >gi|239835168|ref|ZP_04683495.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239821307|gb|EEQ92877.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 657 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 112/260 (43%), Gaps = 36/260 (13%) Query: 24 PHTFMIYFSIFFSIFI--ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81 P T + ++ + + + A + + L Y GL +++ + LVI+ + + L Sbjct: 139 PMTALASTAVEYDVGLIDAAQAEVRQLHLIYTGLAAG-----LIICGVVLVILLLRHNKL 193 Query: 82 LGYISGSILK----------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS- 130 L GS+ + EL R+ + D L+GL N F L E Sbjct: 194 LDRAHGSMQRLTSDLRQATGELQSQNFRLEHDAHHDALTGLPNRVLFRQDLEKRLEAAHA 253 Query: 131 ------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 I+ D+D FK +ND GH VGD ++ ++ +L + G V RLGG+EFA + Sbjct: 254 GGQSAVILLLDLDGFKDVNDTLGHDVGDALLQAVARRLTKLGGRGDMVCRLGGDEFALLS 313 Query: 185 LGSSEQEAAILANDLRKIIEN----SQINISSGPSIHITISAGIAERCHKEPISTIIYR- 239 G E +A LA+ L + I ++ I G + + IS G EP + +++ Sbjct: 314 TGLQEDQALELADRLMEAISEPYHVGELEIKIGTCVGVAISQG-------EPDTEELFKH 366 Query: 240 ADQALYVAKKSGRNRVVCFS 259 AD ALY AK G F Sbjct: 367 ADLALYEAKALGPGHASVFE 386 >gi|221065573|ref|ZP_03541678.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] gi|220710596|gb|EED65964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] Length = 935 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 15/177 (8%) Query: 102 QLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 QL R+ D L+GL N I L++VF D+D FK++ND GH VG Sbjct: 382 QLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRRGMHLAVVFIDLDGFKKVNDQHGHAVG 441 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DK+++ LS ++ V + RLGG+EF A + + ++ D ++IE + + Sbjct: 442 DKLLSVLSRRMTQVLREDDTLARLGGDEFVAILVDLPDISVSVPILD--RLIEVAVQPVP 499 Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G ++ ++ S G++ E I ++ +ADQA+Y AK++G+NR F ++ T Sbjct: 500 IGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFDTEKDRT 556 >gi|162149603|ref|YP_001604064.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus PAl 5] gi|161788180|emb|CAP57785.1| putative signalling protein, GGDEF family [Gluconacetobacter diazotrophicus PAl 5] Length = 541 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 7/172 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQIN 143 L+E + + D L+ LLN A + +E+ ++ DID+FK IN Sbjct: 356 LRERAAQTQALKHQAETDELTQLLNRRALQILAKPRLEISEADERAFLILLDIDHFKSIN 415 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+V+ ++ L V R GGEEFA ++ A +A+ LR+ + Sbjct: 416 DRHGHTEGDRVLVAVAAALREQVRPDDLVARFGGEEFAILIRAHTQMTALSMAHRLRRRL 475 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ++ + I +T S G+A ++ +AD ALY AK++GRN V Sbjct: 476 GSLKVVSAQNVRIPVTASFGVAA-GDNLTWRQLVAKADVALYAAKRAGRNTV 526 >gi|24215228|ref|NP_712709.1| GGDEF domain receiver component of a two component response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45657320|ref|YP_001406.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196312|gb|AAN49727.1| GGDEF domain receiver component of a two component response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45600558|gb|AAS70043.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 330 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 11/162 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155 +SR D L+GL N F L + ++ ++++ DID+FK ND +GH GD+ + Sbjct: 160 ISRTDSLTGLYNRRYFDEILSTEWKRCWRTEASIALIMLDIDHFKLYNDTYGHQGGDQCL 219 Query: 156 AFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 ++ + V R GGEEFA ++E A +++ ++ + IEN I S+ Sbjct: 220 KQVASAIRDCARRAGDVAARYGGEEFAIILPETTESNAVVVSRNILENIENLGIPHSASK 279 Query: 215 SIHI-TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 + I T+S G+A + I+ +I RAD+ALY+AK+ GRN Sbjct: 280 TNSIVTVSIGMATLSPSPENSITELIERADKALYLAKEEGRN 321 >gi|294650374|ref|ZP_06727741.1| two component response regulator [Acinetobacter haemolyticus ATCC 19194] gi|292823787|gb|EFF82623.1| two component response regulator [Acinetobacter haemolyticus ATCC 19194] Length = 409 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 85/176 (48%), Gaps = 15/176 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL ++S LS+ D L+GL N L + ++ ++I+ DID+FK ND Sbjct: 222 ELMRQAQQLSILSQQDALTGLANRRYLDEVLENEWKRAMRHEMPITIMMIDIDFFKLYND 281 Query: 145 NFGHPVGD---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 GH GD + IA L + G R GGEEF + + +A I L + Sbjct: 282 TLGHIQGDQCLRRIAILLGSITSRSGD--LAARYGGEEFLLLFSMTDQDQALIQVKRLME 339 Query: 202 IIENSQIN-ISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNR 254 ++ N IN S S H+TIS +A + +S I RAD ALY+AK +GRN+ Sbjct: 340 LVSNIGINHPKSQISKHVTISVDVATMVPSLGDSLSEFISRADHALYIAKSNGRNQ 395 >gi|261252184|ref|ZP_05944757.1| GGDEF domain protein [Vibrio orientalis CIP 102891] gi|260935575|gb|EEX91564.1| GGDEF domain protein [Vibrio orientalis CIP 102891] Length = 339 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 12/200 (6%) Query: 53 IGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL 112 +G Y L E+ L ++ + SL ++ E + +++ +R D L+G Sbjct: 135 MGTFAIYSAAPSLPESHELEVLEMLASLY------AVAWEKYQLEDQLHYHARYDSLTGC 188 Query: 113 LNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGT 168 LN A + L + + ++ F DID FKQIND GH VGDKV+A + + F Sbjct: 189 LNRRALLQQANDCLNTELKYIACFFADIDKFKQINDRNGHEVGDKVLAAVGEVFNQTFEI 248 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC 228 GR GG+EF A + + + LA + + + +I+ G +I++++ + E Sbjct: 249 SSLGGRYGGDEFVAFSWSNDPDTFSQLAVEFNQRL--GEISPVDGVTIYVSVGMAVCEIT 306 Query: 229 HKEPISTIIYRADQALYVAK 248 + +I RAD A+Y K Sbjct: 307 RMTSLQRLIKRADHAMYKVK 326 >gi|254262168|emb|CAZ90497.1| hypothetical protein [Enterobacter turicensis] Length = 352 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 73/128 (57%), Gaps = 5/128 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 ++++ DID FK +ND FGH VGD ++ +SD L +V RLGG+EF ++ Sbjct: 225 TLMYIDIDDFKSVNDRFGHKVGDTLLIAVSDILRIVTRQTDTPARLGGDEFVVLLPETTL 284 Query: 190 QEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVA 247 ++A + R+I++ + + +S ++ T+S GIA H ++ + AD ALY A Sbjct: 285 EQAYDVG---RRIMDAVTLLRLSPDRALDFTLSIGIASATHTMADVTDWLKAADDALYQA 341 Query: 248 KKSGRNRV 255 K+ G+NR+ Sbjct: 342 KRQGKNRI 349 >gi|221210016|ref|ZP_03582997.1| diguanylate cyclase [Burkholderia multivorans CGD1] gi|221170704|gb|EEE03170.1| diguanylate cyclase [Burkholderia multivorans CGD1] Length = 493 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 11/169 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNF 146 ++ I L+R D L+GL N + L + +++++ D+D FK IND F Sbjct: 310 LTEQHIRHLARHDALTGLPNRHELHAELERMLSRPPRRPDTAVAVMYLDLDGFKAINDRF 369 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+++ ++++L R+GG+EF A ++ + +A L I ++ Sbjct: 370 GHQAGDELLTQVAERLGRTLRDGALAARIGGDEFVVAVDDTTMDACSRVAAQLIAQI-SA 428 Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254 +S G ++ IS GIA + H P +I +AD ALY AK +G+ R Sbjct: 429 PYTLSIGETVRFGISIGIALDDGHGTP-DELIRQADSALYDAKSAGKGR 476 >gi|149194220|ref|ZP_01871317.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Caminibacter mediatlanticus TB-2] gi|149135395|gb|EDM23874.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Caminibacter mediatlanticus TB-2] Length = 651 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 19/181 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 +L ++ N + + + D L+ L N + L + NEK +VF D+D FK+IND +GH Sbjct: 220 KLEMTINDLYKTTLTDYLTRLGNRKFLEKSVKELINKNEKFCMVFLDLDNFKEINDYYGH 279 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD++I +S+ L + R+GG+EF G ++ + N L K++ +Q+ Sbjct: 280 SVGDELIIKISEILKEFIKEDEIISRVGGDEFVLILKGCDDK--TYINNRLNKLL--NQL 335 Query: 209 N---ISSGPSIHITISAGIAERCHKEPISTIIY-----RADQALYVAKKSGRNRVVCFSD 260 N + I ++S G++ P + IIY ++D ALY +K G+N V F D Sbjct: 336 NRRWVLRDYEIKTSVSMGVSIY----PDNAIIYEELLKKSDIALYESKSRGKNSVTFFDD 391 Query: 261 I 261 + Sbjct: 392 M 392 >gi|126664450|ref|ZP_01735434.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Marinobacter sp. ELB17] gi|126630776|gb|EBA01390.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Marinobacter sp. ELB17] Length = 564 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +++++ L L+ L + F + SY +SI++ DID FKQ+ND+FGH GD+V+ Sbjct: 141 FDKVTDLPNRLLLTDRLQQAMFQAD--SYQGIVSILYMDIDRFKQVNDSFGHAGGDEVLR 198 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +++++ G V R GG+EF G S +AA +A+ + + + +S I + + Sbjct: 199 RVAERIGACVGKADTVSRWGGDEFIVLLPGQSAGDAAGVASAISRAL-HSLIVLGGSREL 257 Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 ++ S GIAE HK I +I A A+ K+ G N Sbjct: 258 FVSCSIGIAEYPHKGGDIDALINSARSAMSAIKEQGGN 295 >gi|86742420|ref|YP_482820.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3] gi|86569282|gb|ABD13091.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3] Length = 793 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 13/175 (7%) Query: 94 FISYNRISQ---LSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQIND 144 FI ++++ L+R D L+GL N FI L ++ +++ D+D FK+IND Sbjct: 312 FIEVQQLAESKVLARTDELTGLANRRGFIERLTKAEQRATGVGTFALLLLDLDRFKEIND 371 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 + GH VGD ++A + ++ RLGG+EF A L ++ EAA D + Sbjct: 372 SLGHQVGDALLAQVGTRISDALRPGDLHARLGGDEF-AVLLEHADIEAAKRVADRVLAVL 430 Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ G ++H+ S G A H E ++ RAD A+Y A KSGR V + Sbjct: 431 GDPFDV-GGVTLHVGASIGAAVYPDHAEDAHILLQRADVAMYAA-KSGRTGVESY 483 >gi|89898937|ref|YP_521408.1| diguanylate cyclase [Rhodoferax ferrireducens T118] gi|89343674|gb|ABD67877.1| diguanylate cyclase [Rhodoferax ferrireducens T118] Length = 398 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 14/175 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 K L + R++Q + +D L+GL N F +L ++ LS++ DID+FK N Sbjct: 199 KVLEANNQRLAQQTAMDGLTGLANRRRFDEALTVEWQRAARGRTPLSLLMVDIDHFKNYN 258 Query: 144 DNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 DN+GH GD+ + +S L V V R GGEEF G+ A +A + Sbjct: 259 DNYGHLAGDQCLRRVSSVLSRCVRRAGELVARYGGEEFVLLLPGADMAHACEIAQMCLDL 318 Query: 203 IENSQINISSGP-SIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGR 252 ++ + ++ P S+++T+S G+A + +P S ++ AD A+Y AK SGR Sbjct: 319 MQQECVAHAASPTSVYVTLSIGVACALPDAMLDDPAS-LVNAADAAMYRAKSSGR 372 >gi|89097342|ref|ZP_01170232.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor [Bacillus sp. NRRL B-14911] gi|89088165|gb|EAR67276.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor [Bacillus sp. NRRL B-14911] Length = 1106 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 11/154 (7%) Query: 107 DCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D ++GL N F +L G EK +I++ D+D FK IND GHP+GD+V+ +D+ Sbjct: 534 DYMTGLPNRRLFDQTLNGLFEGKNPEKFAIMYLDLDRFKHINDTLGHPIGDQVLKEAADR 593 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS-QINISSGPSIHIT 219 + F R+GG+EFA A S ++A+ LA + I+ +I G + IT Sbjct: 594 ITASIRKGDFASRMGGDEFAIIARNVESIEDASRLAAKITGTIQKPYEI---EGYELFIT 650 Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGR 252 S GI+ + + R AD ALY AK+ G+ Sbjct: 651 ASIGISLYPNNGSTPEELARNADAALYHAKQMGK 684 >gi|320449799|ref|YP_004201895.1| ggdef domain-containing protein [Thermus scotoductus SA-01] gi|320149968|gb|ADW21346.1| ggdef domain protein [Thermus scotoductus SA-01] Length = 311 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 19/154 (12%) Query: 109 LSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+GL N A ++ ++ ++V D+D FKQ+ND +GH GD+++ ++ Sbjct: 166 LTGLPNRRALEMAMEREAARVERGEAPFALVLLDLDDFKQVNDTYGHQEGDRLLKEVAQY 225 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 LV VGR GGEEFA + +EA +A +R+ ++ + IT S Sbjct: 226 LVAHVRQGDLVGRWGGEEFALLLPRTRGEEAMQVAERIREGLKR----------LGITGS 275 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G+A ++ + + +AD+ALY+AK+ G++RV Sbjct: 276 LGVA--VYEGDLKDLFQKADRALYLAKEGGKDRV 307 >gi|291612949|ref|YP_003523106.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291583061|gb|ADE10719.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 751 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 22/181 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG---SYNEK----LSIVFFDIDYFKQINDNFGHPV 150 ++ ++ D L+G+ N L +++++ L++ + D+D FK +ND GH Sbjct: 314 RQLEHIAHYDALTGIPNRVLLADRLQQALAHSKREGTILAVCYLDLDGFKLVNDTMGHEA 373 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG--SSEQEAAILANDLRKI-----I 203 GDKV+ ++ ++ V RLGG+EFA LG + E+ +A L L +I I Sbjct: 374 GDKVLIEVTQRIKKSIRGDDTVARLGGDEFAVLLLGLHAPEECSASLNRLLEEISQPIEI 433 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +N +S+ SI ++I G T++ ADQA+Y AK+SG+NR + D EN Sbjct: 434 KNRLFEVSA--SIGVSIYPG-----DDHDADTLLRHADQAMYTAKQSGKNRYYLY-DTEN 485 Query: 264 N 264 + Sbjct: 486 D 486 >gi|218282657|ref|ZP_03488872.1| hypothetical protein EUBIFOR_01458 [Eubacterium biforme DSM 3989] gi|218216420|gb|EEC89958.1| hypothetical protein EUBIFOR_01458 [Eubacterium biforme DSM 3989] Length = 479 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 79/166 (47%), Gaps = 8/166 (4%) Query: 102 QLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 LS ID L+ + N I +E + D+D FK +NDN+GH VGDKV+ L Sbjct: 318 HLSEIDPLTSVFNKETTQKLIDQKLKNHEHFCFLILDVDDFKSVNDNYGHAVGDKVLKNL 377 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 SD F VGR+GG+EF E+ I + L+K+ + + I + Sbjct: 378 SDLFKNHFRQTDIVGRIGGDEFIILIEDEHIAESRIQSL-LKKV---NALKIEELQDFKL 433 Query: 219 TISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIEN 263 +IS G+A +YR AD ALY K++G+N + + EN Sbjct: 434 SISVGMAFAPSNGTTFMELYRHADHALYQTKRTGKNDYKIYKNDEN 479 >gi|239617058|ref|YP_002940380.1| diguanylate cyclase with PAS/PAC sensor [Kosmotoga olearia TBF 19.5.1] gi|239505889|gb|ACR79376.1| diguanylate cyclase with PAS/PAC sensor [Kosmotoga olearia TBF 19.5.1] Length = 607 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 17/200 (8%) Query: 73 IISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------- 125 I+S ++++L I + +EL ++ +S D L+ L N F Y Sbjct: 406 ILSQQVAVILKRIK--LEEELRRQKKQLKFMSEHDPLTDLPNRRLFAERAKQYIALAKRR 463 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 LSI++ D+++FK++ND+FGH VGD V+ ++ + V RLGG+EF A Sbjct: 464 KSPLSILYLDLNHFKEVNDSFGHDVGDLVLKKITKRFKSCLREGDLVARLGGDEFVFALP 523 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQAL 244 + + AA +A + ++IE INI G S+ I+ S G+A E I ++ AD + Sbjct: 524 DTDAENAAKVAKRIIEVIEKP-INI-KGKSVKISGSIGVAVFPDDGENIDQLLKHADMNM 581 Query: 245 YVAKKSGRNRVVCFSDIENN 264 Y K R+ C + E N Sbjct: 582 YRDK-----RLKCNNGEERN 596 >gi|170745256|ref|YP_001766713.1| diguanylate cyclase/phosphodiesterase [Methylobacterium radiotolerans JCM 2831] gi|170658857|gb|ACB27911.1| diguanylate cyclase/phosphodiesterase [Methylobacterium radiotolerans JCM 2831] Length = 776 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 17/167 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPVG 151 RI Q++ D L+GLLN S+F + + S K ++ D+D+FK IND GHP G Sbjct: 342 RIQQMASYDDLTGLLNRSSFKAKVSEALKASARSKGDFAVHLLDLDHFKVINDTLGHPAG 401 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRKIIENS 206 D+++ ++D+L + V RLGG+EF + + +E A + +L + + Sbjct: 402 DRLLQMVADRLRGIGALSGSVARLGGDEFVIVQQSVTSPAVAEDLARRVLQELERPFDID 461 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +++ G SI I I+ H ++ AD ALY K +GR+ Sbjct: 462 GTHVTVGASIGIAIAP-----FHANDEDRLLKCADIALYAIKGAGRS 503 >gi|90021368|ref|YP_527195.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89950968|gb|ABD80983.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 325 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N A + + LS++ D+D+FK++ND +GH GDK++ + Sbjct: 146 DPLTGIGNRQAMDNCFAREIKLSLRHQTPLSLMLIDVDFFKKLNDTYGHRAGDKMLKHIV 205 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR--KIIENSQINISSGPSIH 217 + + R GGEEF + + A + A +R I +I+ G ++ Sbjct: 206 TNIKNSLRETDQIFRFGGEEFVVLLHNTDAENARLTAERIRIHSAITPMEID---GENVA 262 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 TIS G+ + + + RAD ALY AKK GRN+VV S Sbjct: 263 STISLGVTTLIDTDNVESFFERADCALYQAKKEGRNKVVVES 304 >gi|325926620|ref|ZP_08187934.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] gi|325542972|gb|EGD14421.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas perforans 91-118] Length = 983 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 1/122 (0%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK+IND++GH VGD V++ + + L F R GGEEF AA G +A Sbjct: 861 DIDHFKRINDDYGHEVGDAVLSAIGEVLSEQDQARCFAARHGGEEFLLAATGLDAVQARA 920 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L +R+ + + +++ + G ++ T S G+A ++ AD LY AK+ GR+R Sbjct: 921 LFERMRQRLADIEVD-AQGMTVRCTASMGMAMSEEAPSRRELLALADHRLYEAKRQGRDR 979 Query: 255 VV 256 ++ Sbjct: 980 LI 981 >gi|239830953|ref|ZP_04679282.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239823220|gb|EEQ94788.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 392 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 9/168 (5%) Query: 96 SYNRISQLSR---IDCLSGLLNHSAF---ISSLGSYNEKLS--IVFFDIDYFKQINDNFG 147 ++RI +LS D L+GLLN ++L S + DIDYFK +ND++G Sbjct: 215 GHDRIGELSHERDSDPLTGLLNRRGLEMRYNALSHTKRGASGWVAVCDIDYFKALNDDYG 274 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD V+ + L + G + R GGEEF L +R+ IE + Sbjct: 275 HAAGDAVLQEFAGILRKLLGERSLIARTGGEEFVICLHDMQADNVLELMEGVRRNIETHR 334 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S + +T S G + + + +AD+ LY AKK GRNR Sbjct: 335 FQRLSDET-SVTCSIGCVRLQEQGDLWQAVDKADKVLYAAKKDGRNRT 381 >gi|254459177|ref|ZP_05072599.1| sensory box/ggdef domain/eal domain protein [Campylobacterales bacterium GD 1] gi|207084070|gb|EDZ61360.1| sensory box/ggdef domain/eal domain protein [Campylobacterales bacterium GD 1] Length = 760 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 17/174 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I Q + D L+GL N I+ L +N +I+F DID FK IND+ GH +G Sbjct: 325 KIRQQAFYDHLTGLANRLTLNDRLEQQIARLARHNRFGAILFIDIDNFKTINDSLGHHIG 384 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL------ANDLRKIIEN 205 D ++ + + + V RLGG+EF S+ + L A L K+++ Sbjct: 385 DTLLKTFAQRASSIMRKEDTVARLGGDEFVILLSDLSDNKNHALEYSHNVARKLHKLMKE 444 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 I + S+++T+S GI +E I+ I+ AD A+Y AK+ GRN CF Sbjct: 445 P-IEVEEH-SLYVTLSIGITTISEEEEDINVILKHADIAMYKAKQQGRN-TTCF 495 >gi|148255842|ref|YP_001240427.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gi|146408015|gb|ABQ36521.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] Length = 907 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 18/166 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 RI+ L+ D L+ L N + F L S ++L++ + DID FK +ND+ GH +GD Sbjct: 464 RITHLAHYDALTELPNRTLFHERLKQELIHVSAGQRLALHYIDIDEFKGVNDSLGHLIGD 523 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +++ ++ L G FV RLGG+EFA G + D+ ++IE+ I + Sbjct: 524 ELLKSVAASLSTCVGEAGFVARLGGDEFAVVQTGIRNR------GDVEQLIEDILAAIRA 577 Query: 213 -----GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252 G + S G+A H + I+ AD A+Y AK +GR Sbjct: 578 PRDCLGHQLTADASIGVALIPEHGTELDQIMKNADLAMYAAKGAGR 623 >gi|13471591|ref|NP_103157.1| hypothetical protein mlr1609 [Mesorhizobium loti MAFF303099] gi|14022333|dbj|BAB48943.1| mlr1609 [Mesorhizobium loti MAFF303099] Length = 447 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 23/173 (13%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHP 149 Y + + + D L+GLL+ F + + E LS++ D+D+FK IND FGH Sbjct: 265 YEALVEHAGRDGLTGLLHRGRFDADGEAAVEVSLRTARPLSLLIIDVDHFKSINDRFGHA 324 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKIIENSQI 208 GDKV+ ++ L V V R+GGEEF A L S A L +R ++ S + Sbjct: 325 EGDKVLKGVASLLSEVASAGDQVFRIGGEEF--AILSSRPHPVARLFGESIRHAVKASAV 382 Query: 209 NISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T+SAG++ RC ++ + ADQ LY AK +GR+RVV Sbjct: 383 ----ASRFELTVSAGVSTVSETTRC----LADLFALADQRLYKAKSTGRDRVV 427 >gi|332142445|ref|YP_004428183.1| hypothetical FOG: GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552467|gb|AEA99185.1| hypothetical FOG: GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 712 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 23/186 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-----------------GSYNEKLSIVF 133 +EL +Y + ++S D L+GL N S L + L + Sbjct: 477 EELQAAYKTLEEVSLRDPLTGLYNRHCLESQLPGEIRRSQFSARQSPTTDKAKQDLLCLL 536 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DID+FK++ND++GH GDKV++ + L VF + R GGEEF S+ +E Sbjct: 537 IDIDHFKRVNDDYGHIAGDKVLSSFAQVLKNVFRQTDLIIRWGGEEFLVVCRQSNREELP 596 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRA-----DQALYVA 247 LA R+++ ++ +I I IT S G + K+ S + + D ALY + Sbjct: 597 ELAERCREMVASTPFDIGLDKPIKITCSIGFSLLSPDKKDNSDVAWERTFAVIDYALYAS 656 Query: 248 KKSGRN 253 K SGRN Sbjct: 657 KLSGRN 662 >gi|328470673|gb|EGF41584.1| hypothetical protein VP10329_07732 [Vibrio parahaemolyticus 10329] Length = 652 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N S F + G ++ ++++ D+D FK+IND +GH G Sbjct: 479 RLEYLAHHDALTGLANRSKFHLELEDLVQRSGYQRDEFAVLYLDLDGFKEINDTYGHDAG 538 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK----IIENSQ 207 D+V+ ++D+L + RL G+EF ++++ +A L + IE Sbjct: 539 DEVLKRVADRLTSATRHSDLIARLSGDEFVMLVNPANQKVVTRIAEQLLENICAPIEYKG 598 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + G SI + + G+ ER + I+ AD A+Y AKK+G+ + + Sbjct: 599 NELKVGVSIGVKL-VGVNER----DATRILKSADTAMYQAKKAGKGQAILM 644 >gi|254505892|ref|ZP_05118037.1| hypothetical protein VPMS16_3044 [Vibrio parahaemolyticus 16] gi|219551115|gb|EED28095.1| hypothetical protein VPMS16_3044 [Vibrio parahaemolyticus 16] Length = 588 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 5/133 (3%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP--MFVGRLGGEEFAAA 183 E + + DID+FK+IND GH GD VI ++ + F P + + R GGEEF Sbjct: 453 KEGIYLAILDIDHFKRINDVHGHQCGDHVILHTAELMKKCFPKPGAISLARYGGEEFCVL 512 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 + E +A R+++E ++++ + T+S GI ++ T I RAD+A Sbjct: 513 FYANDENDAYEQCELFRQVVEQTELSYEE-IEVRYTVSIGITSA--QDSQHTTIGRADKA 569 Query: 244 LYVAKKSGRNRVV 256 LY AK GRN+VV Sbjct: 570 LYQAKGLGRNQVV 582 >gi|213027880|ref|ZP_03342327.1| diguanylate cyclase AdrA [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 129 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 17/129 (13%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK IND +GH GD+ I L+ QL + +GR GG+EFA G+ ++AI Sbjct: 6 DIDHFKSINDTWGHDAGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTPA-DSAI 64 Query: 195 LANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTII--YR-----ADQALYV 246 A + ++ E + + + P + + IS G+A P++ I YR AD ALY Sbjct: 65 TA--MSRVHERLNTLRLPGAPQVMLRISVGVA------PLTPQIGHYREWLKSADMALYK 116 Query: 247 AKKSGRNRV 255 AK +GRNR Sbjct: 117 AKNAGRNRT 125 >gi|157375366|ref|YP_001473966.1| GGDEF domain-containing protein [Shewanella sediminis HAW-EB3] gi|157317740|gb|ABV36838.1| GGDEF domain protein [Shewanella sediminis HAW-EB3] Length = 467 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 10/163 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG----SYNEK--LSIVFFDIDYFKQINDNFGHPVGD 152 + L+ ID L+G+ N FI SL + NE+ L+++ FDID FK INDNFGH VGD Sbjct: 300 ELQHLASIDSLTGIYNRRYFIRSLKDACRTMNEEASLTLLLFDIDKFKTINDNFGHVVGD 359 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +I ++ + + R+GGEEF + ++A L+ ++ + +Q Sbjct: 360 YIIKQIAQVVAEEIPSDAVFARIGGEEFCIYLHNLTVKQANTLSKKVQACVSAAQFE-KD 418 Query: 213 GPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253 H+++S G + C + +I +AD +Y+AK GR+ Sbjct: 419 QVCHHVSVSLG-SVYCTTAMVDHQYLINQADHLMYIAKSLGRD 460 >gi|138894571|ref|YP_001125024.1| response regulator [Geobacillus thermodenitrificans NG80-2] gi|196247821|ref|ZP_03146523.1| response regulator receiver modulated diguanylate cyclase [Geobacillus sp. G11MC16] gi|134266084|gb|ABO66279.1| Response regulator [Geobacillus thermodenitrificans NG80-2] gi|196212605|gb|EDY07362.1| response regulator receiver modulated diguanylate cyclase [Geobacillus sp. G11MC16] Length = 393 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 18/180 (10%) Query: 92 ELFISYNRISQLSR-------IDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDID 137 EL+I +R+ + R ID L+G+ N S L + + D+D Sbjct: 213 ELYIRVHRLVEKKRKIDKLVLIDELTGVYNRKYLPRVYVRLRSDLERFGTPSCLALLDLD 272 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FKQ+ND FGH VGD V+ L+ L+ V R GGEEF +S EA + Sbjct: 273 HFKQVNDRFGHLVGDAVLKKLAAFLLQHTRGMDTVIRFGGEEFIVWLAKTSTCEAHRVLG 332 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255 L++ + +I ++G + T SAG E C E + + AD+ALY AKKSG +RV Sbjct: 333 RLQRQFASEEIE-AAGVRLSCTFSAGFVE-CSDPNESLDHWLKLADKALYAAKKSGGSRV 390 >gi|118579769|ref|YP_901019.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] gi|118502479|gb|ABK98961.1| response regulator receiver modulated diguanylate cyclase [Pelobacter propionicus DSM 2379] Length = 319 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 20/173 (11%) Query: 106 IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+G+ N F SL + + L+++ DID+FK+ ND++GH GD + + Sbjct: 152 IDGLTGVANRRRFDESLEAEWRQCRRHRAPLALLMIDIDHFKKYNDSYGHQEGDVCLRKI 211 Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI 216 + L G P V R GGEEFA G + A A + + I ++SS + Sbjct: 212 ATLLREELGRPHDLVARYGGEEFACLLPGVDMEGAMYKAQSILTALHRQAIPHVSSETAP 271 Query: 217 HITISAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +TIS G+A E H + ++T AD LY AK+ GRNR +C ++ + Sbjct: 272 FVTISLGVAVTSPGPEPRHGQLVAT----ADTQLYKAKQQGRNR-ICGQEVTD 319 >gi|296117223|ref|ZP_06835816.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gluconacetobacter hansenii ATCC 23769] gi|295976318|gb|EFG83103.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gluconacetobacter hansenii ATCC 23769] Length = 572 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 16/189 (8%) Query: 83 GYISGSI-LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVF 133 GY++ + EL + R+S+L+ D L+ LLN F ++L + + ++V Sbjct: 120 GYVASRFEITELMKTKERLSELAETDTLTALLNRGGFNTALSAALGLSSKEPPQSRALVM 179 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQ 190 FD+D FKQIND GH GD V+ ++ +LV + + RLGG+EFA L S Sbjct: 180 FDLDGFKQINDIHGHHAGDIVLRVVASRLVELTDPDDPISRLGGDEFAIVLNKTLRSVPL 239 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 E + + L+ +E I+I + ++ I+ S G +E + + AD ALY AK++ Sbjct: 240 EKYM--DRLQAALERP-IDIET-VTVSISGSIGAVFLDARESVEDMQKNADMALYAAKRA 295 Query: 251 GRNRVVCFS 259 G + F+ Sbjct: 296 GGKQAQMFT 304 >gi|294625650|ref|ZP_06704273.1| signal transduction protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600073|gb|EFF44187.1| signal transduction protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 326 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 10/140 (7%) Query: 120 SSLGSYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 S + S E V F D+D KQIND FGH GD+V+ L D G +VGR GG Sbjct: 181 SVIASQREGWPFVLFVLDMDNLKQINDRFGHLAGDRVLVRLVDSAYGWLGAQDWVGRWGG 240 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 +EF + +SE EA + N ++E + + +H++ + + C + +T + Sbjct: 241 DEF-LIGIHASEDEATLKLNQWLSMLEREDADDA---PLHVSAGSAV---CEQGLDATEL 293 Query: 238 Y-RADQALYVAKKSGRNRVV 256 Y RAD A+Y AK SG R+V Sbjct: 294 YRRADAAMYRAKFSGGRRLV 313 >gi|262404004|ref|ZP_06080559.1| GGDEF family protein [Vibrio sp. RC586] gi|262349036|gb|EEY98174.1| GGDEF family protein [Vibrio sp. RC586] Length = 443 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GLLN AF L + KL+++FFD+D FK+IND GH GD V+ Sbjct: 269 LSERDSLTGLLNRRAFKQQLSQALVKAKRSDMKLALLFFDLDKFKEINDTKGHEAGDMVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ +L F GRLGG+EF L + + + + + + + ++ + + Sbjct: 329 QEIAQRLKGTIRESDFCGRLGGDEF-VVCLDILQDHSGVRSKSYQLLDKLTKPMLVNNEE 387 Query: 216 IHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + +S GIA ++ + P ++ AD+A+YVAK + C Sbjct: 388 LTVGVSIGIALYPDQAVQMP--ELLRIADEAMYVAKHQSGGMIYC 430 >gi|88706235|ref|ZP_01103942.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71] gi|88699629|gb|EAQ96741.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71] Length = 654 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 + I + + D L+GL N LG N + +++F D+D+FK++ND+ GH Sbjct: 212 DTIERQALFDELTGLPNRRLLQDRLGQALARAKRNNTQAALMFLDLDFFKRVNDSLGHSA 271 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAIL---ANDLRKIIE 204 GD+++ + +L RLGG+EF G SE +++ LR+ +E Sbjct: 272 GDELLVEIGRRLSDFLREADTAARLGGDEFVLLLTDIEGGSEHVVSVVRRRGETLRQAVE 331 Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 + INI G +HIT+S G++ + ++ AD A+Y AK GRN + F Sbjct: 332 -APINI-KGNEVHITVSIGVSLLPDDTNDVDDLLKHADTAMYRAKDDGRNTLRFF 384 >gi|325002689|ref|ZP_08123801.1| diguanylate cyclase [Pseudonocardia sp. P1] Length = 295 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 15/193 (7%) Query: 78 ISLLLGYISGSI---LKELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNEKLS 130 + LL G ++ L L + + SR D L+ N + LG ++ Sbjct: 71 VRLLNGPTGATVEDELDRLRREHAEAREQSRRDSLTASYNRRYLDERLVDLLGDGTGRVC 130 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + DID+FKQ+ND GHP GD+V+ + +L F R GGEEFA S Sbjct: 131 LALADIDHFKQVNDTHGHPFGDRVLQRMVHELGRELPRGAFCARYGGEEFALVLPDVSAD 190 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP----ISTIIYRADQALYV 246 E R+ + + P + +TIS G+A H P ++ AD LY Sbjct: 191 EGIAACEAARERVAAHDWSALH-PELRMTISIGVA---HAVPGTSGTEALVDEADLLLYT 246 Query: 247 AKKSGRNRVVCFS 259 AK++GRN V S Sbjct: 247 AKQAGRNAVAHRS 259 >gi|317489391|ref|ZP_07947903.1| GGDEF domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325832393|ref|ZP_08165367.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1] gi|316911498|gb|EFV33095.1| GGDEF domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486029|gb|EGC88484.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1] Length = 836 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 16/158 (10%) Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GLLN +G E+ +++ D+D FK +ND GH VGD V+A ++ Sbjct: 668 DSLTGLLNSETTRLRIGQQLDALAGGERGALLVVDVDCFKDVNDTHGHLVGDLVLADIAR 727 Query: 161 QLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILA--NDLRKIIENSQINISSGPSI 216 L F VGRLGG+EF +GS++ +L + LR+ +E + G Sbjct: 728 ILRENFRIGDVVGRLGGDEFMVYLDRVGSTD---VVLGKCDRLRRAVERHEY---PGTDC 781 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +TIS G+ + + RAD+ALY AK+ GRNR Sbjct: 782 RVTISVGVVLAHAGDTFDDLYGRADEALYAAKRDGRNR 819 >gi|311695626|gb|ADP98499.1| diguanylate cyclase with PAS/PAC sensor [marine bacterium HP15] Length = 312 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 22/224 (9%) Query: 52 YIGLTPFYGLEYILVENLSLVIISIT--ISLLLGYI-----SGSILKELFISYNRISQLS 104 Y LT G EY+ + ++ V+ + L+G++ EL ++ + S Sbjct: 90 YRALTE--GGEYVWLRDVVHVLRDDNGDVEALIGFMFDISERKKTEDELVALQKKLEEYS 147 Query: 105 RIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 D L+G+ N F + + + LS++ DID FK ND GH GD+ + Sbjct: 148 YKDGLTGVANRRMFDTVMNENWNHAIRHQSSLSVILLDIDNFKAYNDLNGHLQGDECLKR 207 Query: 158 LSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGP- 214 ++ L P FV R GGEEF L ++ AAI +A R+++ QI P Sbjct: 208 IATLLENAAQRPRDFVARFGGEEF-VIVLPETDASAAISVAERCRQLLLEEQIPQGDSPN 266 Query: 215 SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S +TIS GI + I+ + DQ LY AK+ GRNR+V Sbjct: 267 SKKVTISMGIGTVVPSRDDCIADFLDLVDQRLYKAKRDGRNRIV 310 >gi|307720979|ref|YP_003892119.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306979072|gb|ADN09107.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 252 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 95/197 (48%), Gaps = 23/197 (11%) Query: 86 SGSILKELFISYN-----RISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF- 134 G + E+ + Y+ + Q++ D L+ L N F L S +K + F Sbjct: 55 DGQQIGEVIVRYDITEKKKFQQMAITDPLTNLYNRRYFNKILIREIKRSQRDKTHLAFMM 114 Query: 135 -DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEA 192 DIDYFK+ ND++GH GD V+ +++ L FV RLGGEEFA E++A Sbjct: 115 IDIDYFKKYNDSYGHKAGDNVLVAVANTLKNSSKRASDFVFRLGGEEFAILFTTEDEKKA 174 Query: 193 AILANDLRKIIENSQI-NISSGPSIHITISAGI------AERCHKEPISTIIYRADQALY 245 ++K IE QI + +S S +IT+S G+ E + T+ AD ALY Sbjct: 175 FAFTELVKKNIEKLQIPHSNSQVSKYITVSIGLLVVDFKNEMVDENGFYTM---ADDALY 231 Query: 246 VAKKSGRNRVVCFSDIE 262 AK +GRN+V + E Sbjct: 232 EAKAAGRNQVTMHKNEE 248 >gi|301382365|ref|ZP_07230783.1| GGDEF domain protein [Pseudomonas syringae pv. tomato Max13] gi|302062375|ref|ZP_07253916.1| GGDEF domain protein [Pseudomonas syringae pv. tomato K40] gi|302130682|ref|ZP_07256672.1| GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 432 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 32/228 (14%) Query: 58 FYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSA 117 F+ L + +L I+ + L+ I+ ++ E + Q++ D L+GL A Sbjct: 206 FWALPKTFILPFTLNILCSQVMLM---IAAAVAHEAY-------QMAFRDELTGLPGRRA 255 Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + + D+D+FK+ ND GH VGD+V+ ++ +L + R GG Sbjct: 256 LNERMQRLGRNYVLAMSDVDHFKKFNDTHGHDVGDQVLRLVASKLSKITNGGGRAYRYGG 315 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP----------------SIHI 218 EEFA + E +R+ I N I N S P S+ + Sbjct: 316 EEFAIVFAAKTIDECMPHLEAIRETIANYAIQLRNKDSRPQDDQQGRQRRSGAHEASVSV 375 Query: 219 TISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G+AER H+ P ++ ADQALY AK +GRN VV + + Sbjct: 376 TVSIGVAERQPEHRTP-EEVLKSADQALYAAKGAGRNCVVAYGQLNRR 422 >gi|255021439|ref|ZP_05293486.1| hypothetical protein ACA_1412 [Acidithiobacillus caldus ATCC 51756] gi|254969144|gb|EET26659.1| hypothetical protein ACA_1412 [Acidithiobacillus caldus ATCC 51756] Length = 541 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 20/169 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S L +D L+G LN + +N+ L + D+D FK+IND +GH +GD Sbjct: 374 VSALVHVDPLTGALNRRGLAEVFRREKARAERHNQSLVLALVDLDRFKRINDRYGHDLGD 433 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ + R GGEE A S+ ++A R ++E Q + Sbjct: 434 RVLINFCETFRRALRATDSFARYGGEELVALLPNSTAEKA-------RSVLERVQDELDR 486 Query: 213 GPSI------HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P++ ++ SAGI + + I AD+ALY AK +GR RV Sbjct: 487 QPTMVRDGSFTVSFSAGITQWRSGMELEDCIIDADKALYAAKAAGRRRV 535 >gi|120611490|ref|YP_971168.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] gi|120589954|gb|ABM33394.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax citrulli AAC00-1] Length = 1260 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 17/180 (9%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSL---------GSYNEKLSIVFFDIDYFKQINDN 145 + + + QL+ D L+GL N L G + +L + + D+D FK +ND Sbjct: 814 VQEDMLQQLAHFDALTGLPNRVQLARRLEQAMAHARAGGW--QLGVAYLDLDGFKPVNDR 871 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH GD+++ ++ +L V RLGG+EF L Q A L +++EN Sbjct: 872 LGHSAGDRLLVIVAGRLTRALRAVDCVARLGGDEF--VLLMPELQSHADAEQLLHRLMEN 929 Query: 206 SQINISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSDIE 262 + G +T++A + + E S T++ AD A+Y AK+ GRNRV F ++ Sbjct: 930 LAAPYTLGTE-RVTVTASVGYTLYPEDASDADTLLRHADHAMYGAKQGGRNRVQPFDAVQ 988 >gi|222055710|ref|YP_002538072.1| diguanylate cyclase [Geobacter sp. FRC-32] gi|221564999|gb|ACM20971.1| diguanylate cyclase [Geobacter sp. FRC-32] Length = 460 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 14/170 (8%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 YN L ID L+GL N+ + Y+ +SI+F DID FK+IND +GH Sbjct: 285 YNNAKNLLYIDELTGLFNYRYLDVALEREVRRAERYSSNISIIFLDIDLFKRINDQYGHL 344 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VG K +A + L V R GG+E+ + + A+++A +R IE Sbjct: 345 VGSKALAEVGLLLKKSVRDVDTVIRYGGDEYTIILIETGIDGASVVAERIRSTIEGHVFI 404 Query: 210 ISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G I +T S G A + C K + + ADQA+Y +K G+N V Sbjct: 405 QSEGLDIKLTASLGCASYPEDACTKLELLEL---ADQAMYRSKACGKNMV 451 >gi|15076965|gb|AAK82996.1|AF285783_1 unknown [Myxococcus xanthus] Length = 176 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 11/165 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+GL NH F L Y++ LS++ D+DYFK+IND +GH GD Sbjct: 1 LQRLSSTDGLTGLHNHRHFQERLREEFRRAQRYDDSLSLILLDLDYFKEINDKYGHSAGD 60 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L V R GGEEFA + A +A +R+ + ++ +S Sbjct: 61 GVLREVAAALTRGVRETDLVARYGGEEFAVLLPRTHLTGALTVAERVRRELRALRLEVSD 120 Query: 213 GPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 S+ +T S G++ H+ ++ ++ AD+ALY AK+ GR+R+ Sbjct: 121 --SLQVTASLGVSSFPHRTVLTPEQLLLTADEALYQAKRDGRDRI 163 >gi|91977729|ref|YP_570388.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91684185|gb|ABE40487.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB5] Length = 823 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 17/165 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 +I+ ++ D L+ L N + + L E +++++ D+D FK +ND+FGHP+G Sbjct: 389 KIAHMAHHDGLTNLPNRALYQERLQQALEQGRAGGARVAVLCIDLDLFKNVNDSFGHPMG 448 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKII----ENS 206 D+++ ++++L G V R GG+EFA A +S EA+ A L +I+ + Sbjct: 449 DRLLRCVAERLRAQVGGQDLVARFGGDEFAIVLAQVTSPNEASDFAARLIEIVSAPYDMD 508 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + + G SI I ++ G E C ++ AD ALY AK G Sbjct: 509 GLEVVIGASIGIALAPGDGEDC-----DALLRNADMALYRAKAHG 548 >gi|301326517|ref|ZP_07219862.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] gi|300846804|gb|EFK74564.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1] Length = 463 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+++ SGL + A S + L+++ DIDYFK INDN+GH GDKV++ + + Sbjct: 308 LTQVYSRSGL--YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 365 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 + G V R+GGEEFA A + + ++A +RK +E Q Sbjct: 366 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQQ 410 >gi|226356413|ref|YP_002786153.1| hypothetical protein Deide_14480 [Deinococcus deserti VCD115] gi|226318403|gb|ACO46399.1| GGDEF domain and Tetratricopeptide repeats-containing protein [Deinococcus deserti VCD115] Length = 538 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 10/182 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQIN 143 L EL + ++++ S D L+G+ N F+ + G+ + S+ DID+FK +N Sbjct: 357 LSELETLHRQVARASITDELTGVFNRH-FLMTQGAAQVRQKTGQCASVAMLDIDHFKAVN 415 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD+V+ + L G+ + R GGEEF ++A + + LR + Sbjct: 416 DTYGHSGGDQVLRSFAQFLQAQLGSGTLLCRFGGEEFVVIFSDMPPEQALLHLDQLR--L 473 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + + + PS+ ++ +AG+ C + + RAD L K+ GR R++ D+ + Sbjct: 474 RLTDMAVPEFPSLQVSFTAGVVA-CKDGDLPEALRRADTLLLRGKRQGRGRILGDQDLPH 532 Query: 264 NT 265 + Sbjct: 533 QS 534 >gi|257413161|ref|ZP_04742175.2| GGDEF domain protein [Roseburia intestinalis L1-82] gi|257204470|gb|EEV02755.1| GGDEF domain protein [Roseburia intestinalis L1-82] Length = 553 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 14/212 (6%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118 Y L + E ++ I+ LL Y+ + KE ++ Q++ D L+G+ N A Sbjct: 346 YSLRVHIQEKHETGELAAGINELLDYVEQADRKEKE-RQQKLLQMAENDPLTGIKNKKAI 404 Query: 119 ISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPM 170 + S +E+++ F DID F+ N N+GH GD VI F++ L + G Sbjct: 405 EKEMLSMVQRAVESHEQITFGFVDIDDFRDYNTNYGHQEGDAVIQFVAQTLKENIHGA-- 462 Query: 171 FVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIA-ERC 228 VGR+GG+EFA G E E A+ + +I+ +N +G + + S GI + Sbjct: 463 -VGRIGGDEFAFCYAGELEPERIRHNADKILEILRTQHVNEQTGEVLPVPCSIGIVMSQG 521 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +I +AD A+Y AK++G+N V D Sbjct: 522 DTLDYTQLIRKADLAMYQAKENGKNTFVLNVD 553 >gi|124514573|gb|EAY56085.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptospirillum rubarum] Length = 699 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 13/170 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F I+ ++++ DID+FK +ND GHP GD+V+ L Sbjct: 268 DALTGLPNRHLFQDRLVRTIARAHRSGHSFALLYIDIDHFKNVNDRLGHPFGDRVLVELG 327 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINIS-SGPSIH 217 +L V V RLGG+EFA S++ E +L R+++ + + + Sbjct: 328 QRLKGVVRETDTVARLGGDEFAVILEEVSDRNEGMVLG---RRLMHEASLPFRIDEARVD 384 Query: 218 ITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIENNTC 266 +T+S G+A+ +T++ + AD AL+ K GRN + FS+ N T Sbjct: 385 LTVSIGVAQYPEDGTDATLLVKNADIALFHVKGDGRNSIQFFSEEMNRTV 434 >gi|239996421|ref|ZP_04716945.1| sensory box/GGDEF family protein [Alteromonas macleodii ATCC 27126] Length = 322 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 15/184 (8%) Query: 89 ILKELFI---SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138 IL++L + Y + + + D L+GL N F L S K LS++ DID+ Sbjct: 139 ILRDLTLHKAEYAALKRKAETDFLTGLANRHKFSDYLSSQWTKCSSEGSPLSVILIDIDH 198 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FK ND +GH GD+ + + + L + R GGEEFA + Q A +LA Sbjct: 199 FKAFNDEYGHIAGDRCLKRIGELLSLSMPNRDTLAARYGGEEFAIILPNCASQTAQLLAI 258 Query: 198 DL-RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 + R + + S + + +T+S G+A E E I++++ AD LY AK GR++ Sbjct: 259 RIKRHLAQLSARHFVLASNKKLTVSMGVATNENQRYENITSLLQAADTLLYQAKSRGRDQ 318 Query: 255 VVCF 258 +CF Sbjct: 319 -ICF 321 >gi|163850435|ref|YP_001638478.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163662040|gb|ABY29407.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 697 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GLLN + FI E+L+ ++ D+D FK +ND +GH GD+V+A ++ Sbjct: 270 DGLTGLLNRAGFIQR---AEEQLAAGASVCLMLLDLDGFKSVNDVYGHSTGDRVLAEVAR 326 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHIT 219 ++ V RLGG+EFA + E+ A LA L + + + +G + Sbjct: 327 RIRVAVPVDCDAARLGGDEFALVYDTARVIESPAALAERLIRTVAQPFESFDTG---RLG 383 Query: 220 ISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S GI CH+ + ++ ++ AD+ALY AK SGRN F D Sbjct: 384 MSIGI---CHRPSDSLTHLLSCADEALYAAKHSGRNHFHLFDD 423 >gi|83648658|ref|YP_437093.1| response regulator [Hahella chejuensis KCTC 2396] gi|83636701|gb|ABC32668.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 418 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 10/162 (6%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N S+ E L+ D+D+FK+IND +GH GD+ I + Sbjct: 260 DYLTGMYNRRYLFSAAKELYRVAKENGEPLTAAMIDVDHFKRINDTYGHEAGDRAICAFA 319 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + FG R GGEEF G S ++ + + R +E + I S + +T Sbjct: 320 KMIGETFGD-YLAARFGGEEFCVLFPGVSIEKISPMLESFRHKVEQTAIPFLSD-HLRLT 377 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 +S G A + + +I RAD LY +K +GRNR+ DI Sbjct: 378 VSIG-ATDVLGDSLDNLIRRADVLLYESKDNGRNRLTTDEDI 418 >gi|114563976|ref|YP_751490.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400] gi|114335269|gb|ABI72651.1| response regulator receiver modulated diguanylate cyclase [Shewanella frigidimarina NCIMB 400] Length = 315 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 14/172 (8%) Query: 106 IDCLSGLLNHSAF-----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+GL N F ++ L EK L+I+ DID+FK ND +GH GD + + Sbjct: 146 LDGLTGLANRRKFDQVLPVTWLQCAREKQPLTIILLDIDFFKHFNDTYGHTEGDTCLRVV 205 Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSI 216 + ++ P V R GGEEF + +A + I + +I +I+S S Sbjct: 206 AQKIQDTVNRPYDLVARYGGEEFICVLPNTDLIGGTYVAQQIVDSIVSLKIAHINSPISK 265 Query: 217 HITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVV-CFSDIENNT 265 +T+SAG++ + P ++ AD+ LY+AK GRNRV+ C +E NT Sbjct: 266 FVTVSAGVSTVVPMYDMPNKILVEAADKQLYLAKDRGRNRVLGCL--VEENT 315 >gi|317483821|ref|ZP_07942761.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924924|gb|EFV46070.1| GGDEF domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 467 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 15/153 (9%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVF-FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 D L+GL+N F + L + +VF FD+D+FK IND GH G++V+A + + + Sbjct: 325 DKLTGLMNRERFNAILSRKLWERPLVFMFDVDHFKHINDTRGHLWGNEVLARVGHKAEEI 384 Query: 166 FGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 G V R GG+EF A G +E+ L +R ++N H+TIS G Sbjct: 385 VGKAGCVARWGGDEFIGFIDAPGDAEETLRSLLESVRD-LDN-----------HVTISIG 432 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++ + I+ R D +Y +K GR+R+ Sbjct: 433 ATRINPEDDMDAILMRVDDGMYRSKAEGRDRIT 465 >gi|304410715|ref|ZP_07392333.1| diguanylate cyclase [Shewanella baltica OS183] gi|307304810|ref|ZP_07584560.1| diguanylate cyclase [Shewanella baltica BA175] gi|304351199|gb|EFM15599.1| diguanylate cyclase [Shewanella baltica OS183] gi|306912212|gb|EFN42636.1| diguanylate cyclase [Shewanella baltica BA175] Length = 323 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGH 148 + + L+ +D L+G N A S + + K + D+DYFK +ND FGH Sbjct: 157 QFRLLETLNSVDPLTGAFNRRAMGSDMEAALSNAERNGVKHLLAILDLDYFKTVNDKFGH 216 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+V+ G + R GGEEF SEQ+ I LR I+ Sbjct: 217 AVGDQVLKRFVAITTSHLGKNDRLYRFGGEEFVLLIPEMSEQDEFI--QHLRMAIKK--- 271 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +++ IT+S G+A T + RA++ALY+AK+ GR+ Sbjct: 272 ELTTPDGKEITVSFGVAPWVPGTTTDTWLQRANEALYLAKQQGRD 316 >gi|302529694|ref|ZP_07282036.1| predicted protein [Streptomyces sp. AA4] gi|302438589|gb|EFL10405.1| predicted protein [Streptomyces sp. AA4] Length = 454 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 14/186 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 ++L N++ +R D +G+ N + S E L+++ D+D+FK Sbjct: 264 TVLGNRLAEINQLQSEARTDPKTGIFNVRGWSESAERALARAARGGETLALLMIDLDHFK 323 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GHP GD V+ ++ L + +GR GGEEF A + A +R Sbjct: 324 WINDTYGHPAGDDVLRTVAQTLDEITRPKDIIGRFGGEEFLILLPDVDTTAAKVTAERIR 383 Query: 201 KIIENSQINISS--GPSIHI---TISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254 I + +I + G S I T S G+A + + ++ AD A+Y AK+ GRN+ Sbjct: 384 TAIADQRIVTTDKRGGSALITGRTASIGVALLGVNGTALEQLLQAADAAVYTAKEGGRNQ 443 Query: 255 VVCFSD 260 V F+D Sbjct: 444 -VRFAD 448 >gi|296120366|ref|YP_003628144.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776] gi|296012706|gb|ADG65945.1| diguanylate cyclase [Planctomyces limnophilus DSM 3776] Length = 577 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 17/181 (9%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAF----ISSLGSYNEKL----SIVFFDIDYFKQINDNF 146 I++ ++ + +R D L+ L N F + S + L S++ D+D FK IND + Sbjct: 389 INFLQMERQARQDGLTDLANRRTFDLQLAREIDSVQQGLGLECSLLLCDLDRFKSINDQY 448 Query: 147 GHPVGDKVI----AFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 GH GD V+ L +Q+ + G + R GGEE A G A +A +R Sbjct: 449 GHQAGDLVLRETAQILREQMGKIRSGDRALLARYGGEEMAILLPGVGITGALRIAEGIRA 508 Query: 202 IIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I++ + S + +TIS G+A C H +I AD ALY AK +GRNRV C Sbjct: 509 AIDSHPFAVESA-LLTVTISVGVAT-CPLHASSPEALISAADAALYEAKSAGRNRVCCAQ 566 Query: 260 D 260 + Sbjct: 567 E 567 >gi|206975811|ref|ZP_03236722.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97] gi|206745905|gb|EDZ57301.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97] Length = 604 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 165 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 223 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + Sbjct: 224 RLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQI---- 279 Query: 204 ENSQINISSGP------SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +NI + P + IT S GIA C + ++ ++ AD A+Y AK +G+NR Sbjct: 280 ----LNILNKPFFIKDEELSITPSIGIAMYPDCGTD-VTALMKNADMAMYRAKANGKNRF 334 Query: 256 VCFS 259 + FS Sbjct: 335 IFFS 338 >gi|153010456|ref|YP_001371670.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC 49188] gi|151562344|gb|ABS15841.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC 49188] Length = 658 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 112/260 (43%), Gaps = 36/260 (13%) Query: 24 PHTFMIYFSIFFSIFI--ATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81 P T + ++ + + + A + + L Y GL +++ + LVI+ + + L Sbjct: 139 PMTALASSAVEYDVGLIDAAQAEVRQLHLIYTGLAAG-----LILCGVVLVILLLRHNKL 193 Query: 82 LGYISGSILK----------ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS- 130 L GS+ + EL R+ + D L+GL N F L E Sbjct: 194 LDRAHGSMQRLTSDLRQATGELQSQNFRLEHDAHHDALTGLPNRVLFRQDLEKRLEAAQT 253 Query: 131 ------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 I+ D+D FK +ND GH VGD ++ ++ +L + V RLGG+EFA + Sbjct: 254 GSQSAIILLLDLDGFKDVNDTLGHDVGDALLQAVARRLTKLGERGDMVCRLGGDEFAVLS 313 Query: 185 LGSSEQEAAILANDLRKIIEN----SQINISSGPSIHITISAGIAERCHKEPISTIIYR- 239 G E+EA LA+ L +I ++ I G + + IS G EP + +++ Sbjct: 314 TGLREEEALELADRLMDVISQPYHVGELEIKIGTCVGVAISEG-------EPDTEELFKH 366 Query: 240 ADQALYVAKKSGRNRVVCFS 259 AD ALY AK G F Sbjct: 367 ADLALYEAKALGPGHASVFK 386 >gi|157960507|ref|YP_001500541.1| TPR repeat-containing diguanylate cyclase and serine/threonine protein kinase [Shewanella pealeana ATCC 700345] gi|157845507|gb|ABV86006.1| diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Shewanella pealeana ATCC 700345] Length = 684 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 9/171 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ S ++ D L+G+ N + I L+++ FDID FK IND Sbjct: 508 LWQSRKAFKHSAQTDFLTGIANRAHVFNRGQRMIDRAIKKKHPLAVIIFDIDNFKSINDQ 567 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH VGD I ++ + +GR+GGEEF +E +A +++ LR+ I Sbjct: 568 YGHQVGDLAIKAVAKRGERWLRDCDLIGRIGGEEFLIVLPDVTEADAILISERLREGIA- 626 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 SQ I +T+S G+A + + ++ ++ AD+ LY AK SG+NRV Sbjct: 627 SQAFKFDDVVIELTVSIGVAALKPPQTRLTDLVNLADKGLYKAKFSGKNRV 677 >gi|158319734|ref|YP_001512241.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus oremlandii OhILAs] gi|158139933|gb|ABW18245.1| diguanylate cyclase with PAS/PAC sensor [Alkaliphilus oremlandii OhILAs] Length = 303 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 10/161 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 ++I L++ D L+ + N + IS L E L+ + FD+D FK IND FGHP Sbjct: 127 DKIVYLAKYDPLTNIPNRANIISQLDDAIKEAEFDQENLAFLIFDLDKFKMINDTFGHPT 186 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209 GDKV+ +++ + + VGR GG+EF ++ + N + + ++ Sbjct: 187 GDKVLQYVASTVQGLLRPYDSVGRFGGDEFVIILRKIKGHRDVLSVVNRIFDVFKSP--T 244 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 I I I+IS GI + ++IY+AD A+Y AKK+ Sbjct: 245 ILEDNHIQISISIGICLLSEAKNRDSLIYQADTAMYEAKKT 285 >gi|46198754|ref|YP_004421.1| putative response regulator [Thermus thermophilus HB27] gi|46196377|gb|AAS80794.1| putative response regulator [Thermus thermophilus HB27] Length = 229 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 19/158 (12%) Query: 109 LSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+GL N A +L ++ ++V D+D FK++ND GH GD+ + ++ Sbjct: 79 LTGLPNRRALEMALEREAARVERGGPPFALVLVDLDGFKRVNDEGGHREGDRYLRRVARA 138 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 LV V R GG+EFA LG+ E+EA +A L + ++ ++ S G + + Sbjct: 139 LVSGVRRGDLVARWGGDEFAVLLLGTGEKEAVEVAERLGRRLQEEGVSASLG----VAVY 194 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 AG E + RADQALY AK G+ RVV S Sbjct: 195 AGDLE--------DLFLRADQALYRAKALGKGRVVLAS 224 >gi|34498537|ref|NP_902752.1| GGDEF family regulatory protein [Chromobacterium violaceum ATCC 12472] gi|34104393|gb|AAQ60751.1| probable GGDEF family regulatory protein [Chromobacterium violaceum ATCC 12472] Length = 338 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + DID+FK++ND FGH VGD+V+ ++ + F + R GGEEFA G+ + Sbjct: 194 LALLDIDHFKRVNDQFGHMVGDEVLLLMAQLMQQSFREEDGLFRYGGEEFALLLQGNQPE 253 Query: 191 EAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKK 249 A R +E P + +ITIS G H + +I +AD+ALY AK Sbjct: 254 IAEQALERFRATVEGHIF-----PQVGNITISIGHTRIVHGQLPDRLIEQADRALYYAKS 308 Query: 250 SGRNRVVCFSDIE 262 GRN+V + +E Sbjct: 309 HGRNQVRGYEQLE 321 >gi|255318504|ref|ZP_05359737.1| diguanylate cyclase [Acinetobacter radioresistens SK82] gi|262378732|ref|ZP_06071889.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255304496|gb|EET83680.1| diguanylate cyclase [Acinetobacter radioresistens SK82] gi|262300017|gb|EEY87929.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 519 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 8/151 (5%) Query: 107 DCLSGLLNHSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL+N S+ + SI+ DID+FK++ND +GH GD V+ +++ + Sbjct: 369 DPLTGLMNRRGMHLSIDQKIALKIPFSILLIDIDFFKRVNDTYGHAEGDLVLKNIAEMMQ 428 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 F R GGEEF S+Q+ A R+ +E I IT+S G Sbjct: 429 KNFRKDDVCCRYGGEEFIVIVPDVSQQDVYESAERFRREVEAQSIEKVGS----ITVSIG 484 Query: 224 IAERCH-KEPISTIIYRADQALYVAKKSGRN 253 IA E IS + AD+ LY AK SGRN Sbjct: 485 IASWPEASEDISEVFILADKNLYEAKNSGRN 515 >gi|255101535|ref|ZP_05330512.1| putative signaling protein [Clostridium difficile QCD-63q42] Length = 628 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 14/164 (8%) Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+ L N L G+ ++ + + DID FK NDN+GH GDKVI ++D + Sbjct: 463 DGLTKLYNRRYLEQQLDLFNGTRDKNMVAILVDIDCFKSYNDNYGHLAGDKVIVKVTDII 522 Query: 163 VVVF-GTPMFVGRLGGEEF-----AAAALGSSE-QEAAILANDLRKIIENSQI-NISSGP 214 VF + R GGEE + ++G E + + K++E I +I S Sbjct: 523 RSVFIDITEHIIRYGGEEILILVDSIESIGVEEIDNIELYIKRVFKLLEFEGIEHIYSKI 582 Query: 215 SIHITISAGIA-ERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256 +ITISAG++ +RCH ++ + +I AD+ LY +KK+GRN+ + Sbjct: 583 KNYITISAGVSIKRCHSRKDVEILIEDADKNLYKSKKAGRNQYI 626 >gi|192292502|ref|YP_001993107.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris TIE-1] gi|192286251|gb|ACF02632.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris TIE-1] Length = 630 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 16/173 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH---SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 KE+ R+++L+R D L+GL N F++ + + + LS++ D+D FK ND+FG Sbjct: 435 KEVEALNARLAELARTDGLTGLPNRRSLDGFVARVITSSPTLSVLMIDVDDFKGFNDHFG 494 Query: 148 HPVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 H GD + QL +FG + F R GGEEF + A A L+ Sbjct: 495 HQGGDDALR----QLGHLFGGLVANVHGFAARYGGEEFTIVLPSADAVAAVDFAESLQAA 550 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPI-STIIYR-ADQALYVAKKSGRN 253 + I + ++T+S GIA C P ST++ R AD ALY AK+ GR+ Sbjct: 551 VRTLAIRNPASARGYLTVSIGIA--CGTAPCDSTVLLRDADIALYEAKRRGRD 601 >gi|149909555|ref|ZP_01898209.1| methyl-accepting chemotaxis protein-like protein [Moritella sp. PE36] gi|149807460|gb|EDM67411.1| methyl-accepting chemotaxis protein-like protein [Moritella sp. PE36] Length = 386 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 33/252 (13%) Query: 18 NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISIT 77 +LE +S ++ YFS + I T I++ + + +N+ ++ + Sbjct: 156 SLEQYSKIAYVSYFSPW-DWLIGTGIYLDD-----------------MEQNVFWTVVKAS 197 Query: 78 ISLLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHS-------AFISSLGSYNEK 128 LL G++ G+ + + N++S+ S D L+ L + + N Sbjct: 198 GILLFGFVLFIGTAIVIVNFVVNQLSEQSVRDTLTKLYTKRFLEEVIPGMLENEKRNNRT 257 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ VF DID+FK +ND++GH GDKV+ ++ ++ + + R GG+EF +G Sbjct: 258 LAAVFMDIDHFKDVNDSYGHDCGDKVLQKIAQVMLENTRSGDYCIRYGGDEF--VIIGPC 315 Query: 189 EQEAAILANDLRKIIENSQINISSGPSI--HITISAGIA-ERCHKEPISTIIYRADQALY 245 + + ++A + +I E + + S I +T+SAGIA H + + +AD LY Sbjct: 316 DDDKNVIAV-VERIREEAAALVFSHHDIDFKVTLSAGIALYENHHDSFDETLIQADMKLY 374 Query: 246 VAKKSGRNRVVC 257 AKK GRN VV Sbjct: 375 QAKKMGRNCVVA 386 >gi|194365644|ref|YP_002028254.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia R551-3] gi|194348448|gb|ACF51571.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia R551-3] Length = 710 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 15/146 (10%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 + +++F D+D FKQ+ND +GH GD ++ ++++ + + RLGG+EF Sbjct: 300 RFAVMFMDLDGFKQVNDAYGHQAGDALLVAVAERTRQLLRPNDMLARLGGDEFVLVVRIE 359 Query: 188 SEQEAAILANDLRKIIENSQINISSGP-----SIHITISAGIAERC--HKEPISTIIYRA 240 +++ LA R+I++ + SGP + +T S G+A C H ++ A Sbjct: 360 HDEDLPTLA---RRILQ----AVGSGPLLADNELQVTASIGVAI-CPDHAASERQLMAFA 411 Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266 D A+Y AK+SGRN V F+D N++ Sbjct: 412 DAAMYQAKESGRNAFVLFADWMNDSA 437 >gi|114705392|ref|ZP_01438300.1| diguanylate cyclase/phosphodiesterase [Fulvimarina pelagi HTCC2506] gi|114540177|gb|EAU43297.1| diguanylate cyclase/phosphodiesterase [Fulvimarina pelagi HTCC2506] Length = 489 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 9/162 (5%) Query: 107 DCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+GL N AF + Y K++++ FDID FK +ND GH GD+++ Sbjct: 48 DELTGLPNRRAFSGHIEQYFRDSGSKAETKVAMLLFDIDNFKLVNDEHGHEGGDQLLRAF 107 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 S++++ G RLGG+EFA A G +E + ++ + + Sbjct: 108 SERILEAVGPECLFARLGGDEFAIAMFGEEAEERSREMASRLSVLSKKPYECAGRTLVAT 167 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G+A + + I+ RAD ALY AK++ R+ CF D Sbjct: 168 SSIGGVACGGNLADVPAIMRRADIALYNAKENKRS-AACFYD 208 >gi|91780085|ref|YP_555292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia xenovorans LB400] gi|91692745|gb|ABE35942.1| Putative diguanylate cyclase(GGDEF)/ phosphodiesterase(EAL) with PAS/PAC and GAF sensors [Burkholderia xenovorans LB400] Length = 847 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 11/168 (6%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI QL+ D L+GL N + F ++ +L++VF D+D+FK++ND GH G Sbjct: 411 RIHQLAFHDTLTGLPNRNMFETQAQQLLNDARRTERELALVFIDLDHFKRVNDTRGHATG 470 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ + V +GRL G+EF A +A + R + + + Sbjct: 471 DEVLCETGRRFKSVLRDGDLLGRLAGDEFVAILPHCGVHQATGIVE--RLLAATAPPVVV 528 Query: 212 SGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G IH + S GIA E + T++ +AD A+Y AK GR CF Sbjct: 529 AGAPIHASASIGIAMYPADGEHVPTLLRQADIAMYHAKARGRGH-FCF 575 >gi|83951280|ref|ZP_00960012.1| diguanylate cyclase, putative/response regulator [Roseovarius nubinhibens ISM] gi|83836286|gb|EAP75583.1| diguanylate cyclase, putative/response regulator [Roseovarius nubinhibens ISM] Length = 471 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 23/172 (13%) Query: 107 DCLSGLLNHS---AFISSLGSYNEK---------LSIVFFDIDYFKQINDNFGHPVGDKV 154 D L+GL N F+ + S E +++ D+D+FK IND +GH GD+V Sbjct: 294 DPLTGLYNRRFALPFLERVCSGQEGAGTDTLETGFAVMLADLDFFKNINDKYGHSGGDQV 353 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS--S 212 + ++D + V R+GGEEF G + EA A+ + + I ++ I ++ S Sbjct: 354 LRQVADHFRAILRDCDMVARIGGEEFLLVCPGVTPDEARQTADRICREIADTAIPLTGYS 413 Query: 213 GPSIHITISAGI----AERCHKEPI----STIIYRADQALYVAKKSGRNRVV 256 P +HIT+S G+ A R P ++ RAD ALY +K GRN V Sbjct: 414 QP-VHITVSIGLVMGRAGRGELSPTGGESERLLARADAALYASKAHGRNTVT 464 >gi|127511728|ref|YP_001092925.1| diguanylate cyclase [Shewanella loihica PV-4] gi|126637023|gb|ABO22666.1| diguanylate cyclase [Shewanella loihica PV-4] Length = 394 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 23/201 (11%) Query: 71 LVIISITISLLLGYISGSILK-----ELFISYNRISQLSRIDCLSGLLNHSAF------- 118 LVII +LL + +IL+ +L + R ++ ID L+ L N F Sbjct: 179 LVIIITGQKVLLQWFRKAILRDAEKQQLLQQFKR---MALIDGLTDLSNRRHFDEVLALE 235 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGG 177 I + + LS++ D+D+FK++ND+ GH GD+ + L + L V P R GG Sbjct: 236 IKAAERTGDPLSMILLDVDFFKRLNDSLGHSDGDRCLVRLGEVLHGVASRPRDLAARYGG 295 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEP---I 233 EEFA + A +A +R ++ ++I + S ++T+S G+ C +P Sbjct: 296 EEFAIILPDTDLSGARHIAEQIRYELKAAEIPHPDSTLGAYVTVSQGV---CLWQPGLDA 352 Query: 234 STIIYRADQALYVAKKSGRNR 254 ++ ADQ LY +K GR+R Sbjct: 353 DELLASADQLLYQSKAQGRDR 373 >gi|46205306|ref|ZP_00209791.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 142 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 2/135 (1%) Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQE 191 D D+FK+ ND +GH VGD+V+ L+ L P V R+GGEEFA + E Sbjct: 1 HVDADHFKRCNDRYGHAVGDEVLKGLARCLGASVHQPDDLVARIGGEEFAVLLPETDENG 60 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250 A +A + + + + S +T+S G+A + + + + RAD ALY AK S Sbjct: 61 ATRVAQAIHRAVATLAVPASGLGVGAVTVSVGLAVDAAGEGELGDLYRRADAALYEAKAS 120 Query: 251 GRNRVVCFSDIENNT 265 GRNR C S N T Sbjct: 121 GRNRTQCASAPANRT 135 >gi|330873415|gb|EGH07564.1| GGDEF domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 398 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 98/211 (46%), Gaps = 26/211 (12%) Query: 68 NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120 N L + ++ + L+ Y S L LF R+ Q+ +R D L+ L N Sbjct: 191 NALLFVSTVMLMLMASYFLERASRLSYLFALRGRLLQVQLLEFARTDALTRLFNRRYQDE 250 Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS---DQLVVVFGTPM 170 L S E+ ++I+ DID+FK NDN+GHP GD + L Q G Sbjct: 251 VLTSVWERARKKQANVAIILLDIDHFKSYNDNYGHPQGDVCLKLLCKAIQQSAHDGGAVA 310 Query: 171 FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCH 229 F R GGEE + + +A +A L+ + ++ + + G + H+TIS G+A Sbjct: 311 F--RFGGEE-VLVLMNADAGQATKMAETLKATVAALKLPHPALGENAHVTISLGVASGI- 366 Query: 230 KEPI---STIIYRADQALYVAKKSGRNRVVC 257 P+ T+I AD ALY AK +GRN V C Sbjct: 367 -APLITYDTLISAADNALYAAKHAGRNCVFC 396 >gi|330503952|ref|YP_004380821.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328918238|gb|AEB59069.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 386 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 15/171 (8%) Query: 100 ISQLSRI----DCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQINDNFGH 148 IS+L R+ D L+GL N +F L ++ L+++ DID+FK ND +GH Sbjct: 214 ISRLMRLLAYHDSLTGLHNRRSFNRQFERLWRQAQRDGKSLALLLCDIDHFKAYNDCYGH 273 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 GD + + + P+ +G RLGGEEFA EA A LR+ +E + Sbjct: 274 QAGDVALQRVGALIEQAARRPLDIGVRLGGEEFALLLFDIGADEARQRAEALRQSLEEAG 333 Query: 208 I-NISSGPSIHITISAGIAERCHK-EP-ISTIIYRADQALYVAKKSGRNRV 255 I + S +T+S G+A C + +P +S + +AD+ALY AK GRN+V Sbjct: 334 IAHRGSDSGDMLTMSIGVACLCPETQPELSQLYEQADRALYEAKAFGRNQV 384 >gi|329913210|ref|ZP_08275906.1| hypothetical protein IMCC9480_1122 [Oxalobacteraceae bacterium IMCC9480] gi|327545406|gb|EGF30622.1| hypothetical protein IMCC9480_1122 [Oxalobacteraceae bacterium IMCC9480] Length = 942 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 10/172 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 +S + D L+G+LN AF + L + + ++++ D+D FK +ND GH GD+ Sbjct: 491 LSHQANHDALTGVLNRRAFEARLNALISDTASQRQYAVLYLDLDQFKVVNDTCGHAAGDE 550 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 +I +S L + RLGG+EF L + +A +A LR+ + + I G Sbjct: 551 LICQISMILQQSIREGDLLARLGGDEFGIVLLDCGDSDAMRIAEQLRESVAAIRF-IWGG 609 Query: 214 PSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF--SDIE 262 + +S G+ + ++ AD A Y+AK+ GRNRV + DIE Sbjct: 610 QRFTVGVSVGMVALARGGSTLKEVMKSADAACYMAKEKGRNRVHVYRTDDIE 661 >gi|307304385|ref|ZP_07584136.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sinorhizobium meliloti BL225C] gi|306902587|gb|EFN33181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sinorhizobium meliloti BL225C] Length = 1071 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 9/169 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE-KLSIVFFDIDYFKQINDN 145 ++ ++ +++ ++R D L+GL N F +L N +++++ D+D FK +ND Sbjct: 637 EDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNESNHARMAVLCLDLDGFKAVNDT 696 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIE 204 GHP GD ++ +S +L+ T V RLGG+EFA L S EA LA R I Sbjct: 697 LGHPAGDALLRQVSTRLIQAVRTTETVARLGGDEFAIIQPLTESRDEAFRLAQ--RLIDT 754 Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252 S+ G S ++ S GIA +I AD ALY AK SGR Sbjct: 755 LSEPFSIEGASANVGTSIGIAFAPEDGTSADELIKAADIALYSAKSSGR 803 >gi|170727890|ref|YP_001761916.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC 51908] gi|169813237|gb|ACA87821.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC 51908] Length = 677 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 17/184 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 IL + + +++ +++ D L+GL N + + ++ + + S+VF D+D FK Sbjct: 232 QILIQFSQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKNQFSMVFIDLDRFK 291 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILAND 198 +ND+ GH +GDK +A ++ L V G V RLGG+EF A + + +Q A + N Sbjct: 292 NVNDSLGHALGDKFLARIARVLERVVGDKGTVARLGGDEFVILADEIQTPDQAADFVDNL 351 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255 L ++ Q+N +IH S GI+ + + T +I AD A+Y AK +G N+ Sbjct: 352 LIQLNTPMQLNEH---TIHPAASVGIS--IYPDDGMTAEDLIRHADIAMYSAKAAGSNQW 406 Query: 256 VCFS 259 F Sbjct: 407 AFFK 410 >gi|95931432|ref|ZP_01314139.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95132526|gb|EAT14218.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 194 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 16/173 (9%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 +++R+ +L D L+GL N F I+ ++ LS+VF D+D+FK +NDN GH Sbjct: 24 NFSRVRELVITDDLTGLYNARYFDDLLDVEIARAQRFDSTLSLVFIDLDFFKLVNDNHGH 83 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VG +++A + L T + R GG+EF +S++ A L LR+++ + + Sbjct: 84 LVGSRMLAEIGQLLKSRIRTVDYGARYGGDEFVLILPQTSKKGAYDLVCSLRELVRSHVL 143 Query: 209 NISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRVV 256 G I +T S GIA PI +I AD +Y K++ R+ V+ Sbjct: 144 LTEDGSEIRVTASFGIA----AYPIDADNKIDLIRLADNMMYKVKQTTRDGVL 192 >gi|222149275|ref|YP_002550232.1| GGDEF family protein [Agrobacterium vitis S4] gi|221736259|gb|ACM37222.1| GGDEF family protein [Agrobacterium vitis S4] Length = 511 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 14/180 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIN 143 +EL R L++ D L+GL N +F + L +++++V D+D FK IN Sbjct: 65 EELVQERERAIALAQQDQLTGLANRRSFTAVLTDACQKSRLRGDRVTVVLVDMDRFKAIN 124 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRK 201 D +GH GD V+ + +L+V G P V RLGG+EFA L + A +++ Sbjct: 125 DAYGHEAGDAVLREFARRLMVAAG-PGTVARLGGDEFALILDHLSDVTADHAFVSSFRAS 183 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260 + E N G + ++ S G A ST + R AD ALYV+KK+G + F D Sbjct: 184 LQEPVLFN---GKRLEVSASIGYASLPDHAASSTELLRHADMALYVSKKAGLSLATAFDD 240 >gi|166712813|ref|ZP_02244020.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 532 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 12/159 (7%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL LS++ D+D+FKQ ND+ GH GD ++A + Sbjct: 365 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 424 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L+ T R GGEEF + +EA +A +R I + + +S G Sbjct: 425 ELLLTRLRTEDVACRYGGEEFTVRLPEADGEEALRVAEQIRDYI--AALAVSDGARALPK 482 Query: 220 ISA--GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 ++A G+A E +++I +AD ALY AK GRNRV Sbjct: 483 VTALIGVASFPADGEQGASLIQKADAALYRAKHRGRNRV 521 >gi|157373970|ref|YP_001472570.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157316344|gb|ABV35442.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 351 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 11/197 (5%) Query: 71 LVIISITISLLLGYISGSILKELFISY--NRISQLSRIDCLSGLLNHSAF-------ISS 121 L I+ +L + +I++++ Y + +++ +D L+ + N F I + Sbjct: 153 LAILVTGQKVLYSWFKKAIVRDVEKQYLLKQFRRMALVDGLTNISNRRHFDEILSQEIRA 212 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEF 180 N LS++ DIDYFK++ND+ GH VGD+ + ++ L V+ P R GGEEF Sbjct: 213 SERNNHPLSLILIDIDYFKRLNDSSGHQVGDECLVEVAKVLAVICHRPRDLAARYGGEEF 272 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAERCHKEPISTIIYR 239 + +A +R + +++ H IT+S G+ + I + Sbjct: 273 VLLLPDTGLSGGCQIAKKVRDKLAGIKLDHPDSELGHYITVSQGVCQWREGMSADDFISK 332 Query: 240 ADQALYVAKKSGRNRVV 256 AD LY AK +GR+R V Sbjct: 333 ADTLLYRAKSTGRDRYV 349 >gi|153833810|ref|ZP_01986477.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Vibrio harveyi HY01] gi|148869868|gb|EDL68836.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Vibrio harveyi HY01] Length = 815 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 12/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 ++ +++ D L+ L N + IS L + E + +F DID+FK IND+ GH G Sbjct: 389 KLQRMAFYDPLTNLPNRTHLISLLEQHIENGQKHQHAFATLFLDIDHFKHINDSMGHFCG 448 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209 D+++ L+++L V V R+GG+EF L + E ++ ++ + + I+ N Sbjct: 449 DQLLTKLAERLQDVLHLRAHVARIGGDEF-VIILPNIESDSQLI-DTIEDILCLFNRPFE 506 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S S+ I+ S G+A + T++ AD A+Y+AKK+GRN +S Sbjct: 507 VSKNESLRISTSVGVARYPQDGQDSETLLKNADTAMYLAKKNGRNGYAFYS 557 >gi|217973280|ref|YP_002358031.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS223] gi|217498415|gb|ACK46608.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS223] Length = 546 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 12/160 (7%) Query: 107 DCLSGLLNHSA-FISSLGSYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNH+ +++ YN ++ I FD+D+FK++ND +GH GDKV+ + Sbjct: 384 DSLTGLLNHTQILVAARRCYNVARRINSQVCIAMFDLDHFKKVNDTYGHAGGDKVLLAFA 443 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L F GR GGEEF + A N +R+ + + + +T Sbjct: 444 HLLQQSLRQTDFTGRYGGEEFMLVLPDMQKPLAIAKLNAIRESFSHI-VFVEDAVEFKVT 502 Query: 220 ISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+ ++ C E + AD+ LY AK+ GRN++V Sbjct: 503 LSGGLVFSDEC--EEFQDCLLLADKNLYEAKRLGRNQLVV 540 >gi|134094840|ref|YP_001099915.1| hypothetical protein HEAR1631 [Herminiimonas arsenicoxydans] gi|133738743|emb|CAL61790.1| Conserved hypothetical protein, GGDEF domain [Herminiimonas arsenicoxydans] Length = 526 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 14/167 (8%) Query: 107 DCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F +L N+ LS+++ D+D FK +ND +GH GD+++ ++ Sbjct: 363 DVLTGLANRGLFDEIVNQQLALCERNQTSLSVLYIDLDGFKAVNDAYGHETGDQLLCEVA 422 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHI 218 +L V RLGG+EFA +G+ ++AA A K++E+ S + + S HI Sbjct: 423 ARLKASSRHSDLVARLGGDEFAIVMVGTGLKDAAFFAE---KLVESLSAVYVFGNLSAHI 479 Query: 219 TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + S G+A C + + Y AD+A+Y AK +GR + V E Sbjct: 480 SASIGVASYPDCALTSDALLQY-ADRAMYQAKGAGRRQAVMAPPAER 525 >gi|307544296|ref|YP_003896775.1| diguanylate cyclase with PAS/PAC sensor [Halomonas elongata DSM 2581] gi|307216320|emb|CBV41590.1| diguanylate cyclase with PAS/PAC sensor [Halomonas elongata DSM 2581] Length = 687 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 11/163 (6%) Query: 107 DCLSGLLNHSAFI----SSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN +L + + + ++ FD+D FK IND GH +GD+++ ++ Sbjct: 526 DPLTGLLNRRGLERRLEEALADWRKTGTPSVLLIFDLDRFKPINDLGGHALGDEMLCQVA 585 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GG+EFA + + A +A LR+ I Q+ + G +T Sbjct: 586 RALSRTVRRSDHTARQGGDEFAVLLPSCTFERAQDIAESLRETIRELQV-VHGGRVFSVT 644 Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +S G+ ER + I +++ RAD A Y AK+ GR+RVV + Sbjct: 645 LSLGVTCFERGDQR-IESVMQRADAASYRAKRMGRDRVVMHGE 686 >gi|291566707|dbj|BAI88979.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 501 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 16/179 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVG 151 + +L+ D L+ + N F L +YN E ++++ D+DYFK ND FGH G Sbjct: 304 LQRLALYDDLTQVANRRRFNEYL-AYNWHRCSREQEPIALILCDVDYFKPYNDTFGHQAG 362 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209 D + ++ + + V R GGEEFA + A +A +RK +EN ++ + Sbjct: 363 DDCLHKIARAISGAIQRSVDLVARYGGEEFAIILPNTPINGAVKVAERIRKEVENLRVPH 422 Query: 210 ISSGPSIHITISAGIAER-CHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 S S ++T+S G+A + H E + ++I +AD+ALY AK GRN C E+ +C Sbjct: 423 PGSQSSDYVTVSLGVACKIPHSELSVDSLIAQADEALYQAKNQGRN---CTVIAESPSC 478 >gi|161521657|ref|YP_001585084.1| RNase II stability modulator [Burkholderia multivorans ATCC 17616] gi|189352176|ref|YP_001947803.1| RNase II stability modulator [Burkholderia multivorans ATCC 17616] gi|160345707|gb|ABX18792.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia multivorans ATCC 17616] gi|189336198|dbj|BAG45267.1| signal transduction GGDEF/EAL domain protein [Burkholderia multivorans ATCC 17616] Length = 667 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 17/186 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDID 137 SG + E + R+++L+ D L+GL N A G ++ I+F D+D Sbjct: 218 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIRTVIAQQTGDTPGQVGILFLDLD 277 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193 FK++ND++GH GD+++ +S + + + RLGG+E F E A Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEQGTRALLEATAQ 337 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I+ LR I + + + SI I + H + + T+I AD A+YVAK++G++ Sbjct: 338 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRNADTAMYVAKEAGKH 392 Query: 254 RVVCFS 259 FS Sbjct: 393 TYRVFS 398 >gi|15600986|ref|NP_232616.1| GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586760|ref|ZP_01676543.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121727738|ref|ZP_01680826.1| GGDEF family protein [Vibrio cholerae V52] gi|147672164|ref|YP_001215848.1| GGDEF family protein [Vibrio cholerae O395] gi|153816832|ref|ZP_01969499.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|153822645|ref|ZP_01975312.1| GGDEF family protein [Vibrio cholerae B33] gi|227811839|ref|YP_002811849.1| GGDEF family protein [Vibrio cholerae M66-2] gi|229506622|ref|ZP_04396131.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae BX 330286] gi|229510581|ref|ZP_04400061.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae B33] gi|229517288|ref|ZP_04406733.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae RC9] gi|229605098|ref|YP_002875802.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae MJ-1236] gi|254850584|ref|ZP_05239934.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255745978|ref|ZP_05419925.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholera CIRS 101] gi|262163464|ref|ZP_06031210.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae INDRE 91/1] gi|262167348|ref|ZP_06035057.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae RC27] gi|298500067|ref|ZP_07009873.1| GGDEF family protein [Vibrio cholerae MAK 757] gi|9657610|gb|AAF96129.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549057|gb|EAX59094.1| GGDEF family protein [Vibrio cholerae 2740-80] gi|121629955|gb|EAX62365.1| GGDEF family protein [Vibrio cholerae V52] gi|126512635|gb|EAZ75229.1| GGDEF family protein [Vibrio cholerae NCTC 8457] gi|126519844|gb|EAZ77067.1| GGDEF family protein [Vibrio cholerae B33] gi|146314547|gb|ABQ19087.1| GGDEF family protein [Vibrio cholerae O395] gi|227010981|gb|ACP07192.1| GGDEF family protein [Vibrio cholerae M66-2] gi|227014887|gb|ACP11096.1| GGDEF family protein [Vibrio cholerae O395] gi|229345324|gb|EEO10297.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae RC9] gi|229353026|gb|EEO17966.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae B33] gi|229356973|gb|EEO21891.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae BX 330286] gi|229371584|gb|ACQ62006.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae MJ-1236] gi|254846289|gb|EET24703.1| GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255735732|gb|EET91130.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholera CIRS 101] gi|262024232|gb|EEY42924.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae RC27] gi|262028031|gb|EEY46690.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio cholerae INDRE 91/1] gi|297542048|gb|EFH78099.1| GGDEF family protein [Vibrio cholerae MAK 757] Length = 359 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 12/134 (8%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFA 181 NE I DID+FK +ND +GH GDKVI Q+V + T + RLGG+EF Sbjct: 208 NESAVIAVIDIDHFKSVNDLYGHDTGDKVIT----QVVEIMNTHCRELDLLFRLGGDEFL 263 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 +S +A ++ + + I+ + + +T+S G+AE + RAD Sbjct: 264 LLFENTSLTDATLVMSHIGCRIQQTHYPYHAK----VTVSVGLAEALRTDDPEQWFKRAD 319 Query: 242 QALYVAKKSGRNRV 255 QALY +KK G+NRV Sbjct: 320 QALYHSKKMGKNRV 333 >gi|254515426|ref|ZP_05127487.1| response regulator/sensory box/ggdef domain/eal domain protein [gamma proteobacterium NOR5-3] gi|219677669|gb|EED34034.1| response regulator/sensory box/ggdef domain/eal domain protein [gamma proteobacterium NOR5-3] Length = 660 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 17/176 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ + D L+GLLN +F + + S +E L+I F D+D FK +ND +GH VGD++ Sbjct: 213 KLQHTAEHDPLTGLLNRGSFSAGINSLDENRMNNLAIAFVDLDQFKAVNDTWGHAVGDEL 272 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA--AILANDLRKIIENSQINISS 212 + + +L V RLGG+EFA A E+ A+ R++ N + I Sbjct: 273 LKVAALRLQRCARHSDMVARLGGDEFAIVAFNCPNDESLPALGEKIARRM--NGDVTI-D 329 Query: 213 GPSIHITISAGIA--ERCH--KEPISTIIYR----ADQALYVAKKSGRNRVVCFSD 260 G I + S GIA + C K P R AD+A+YVAK+S R F + Sbjct: 330 GHQIALNTSIGIAHSQWCSEPKLPDGQCAERLMSFADEAMYVAKRSRGKRFHIFQE 385 >gi|218517144|ref|ZP_03513984.1| probable two-component sensor histidine kinase protein [Rhizobium etli 8C-3] Length = 408 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 21/176 (11%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL S +I Q++ D L+GL N + F I S ++ ++ D+D+FK IND Sbjct: 146 ELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQRAGVMLIDMDHFKAIND 205 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDL--- 199 GHPVGD+++ ++ ++ V RLGG+EFA + ++ A I + L Sbjct: 206 TMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPNVQDNDDLAQIASRMLAAF 265 Query: 200 --RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 R ++ + +I +S I + + G A P + Y AD A+Y+AK+SGR+ Sbjct: 266 GERFMLSDREIFVSCSIGISVFPNDGDA------PDDLVKY-ADSAMYLAKRSGRS 314 >gi|89055710|ref|YP_511161.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1] gi|88865259|gb|ABD56136.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1] Length = 554 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 17/172 (9%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++ S D L+GL N S +I++L + +I+F D+D FK IND GH GD Sbjct: 106 VTRDSNEDPLTGLSNRRHFEANVSVWIAALRNRGAAFAILFIDLDRFKTINDTLGHEAGD 165 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILAN----DLRKIIENSQ 207 ++ ++ L + + V RLGG+EF LG S E + LA+ ++ K E Sbjct: 166 GLLVAVASMLKRITHSSDLVARLGGDEFVILRPLGESALEISGLADEIIREMSKPFEFDG 225 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++S G S+ + IA++ + P ++ AD ALY AK +GR R F+ Sbjct: 226 KSVSCGASVGV----AIADKDARNP-EEVVGDADTALYHAKSTGRARWSFFT 272 >gi|320335284|ref|YP_004171995.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] gi|319756573|gb|ADV68330.1| diguanylate cyclase [Deinococcus maricopensis DSM 21211] Length = 199 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 7/149 (4%) Query: 112 LLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 LL+ AF ++L + ++ D+D+FK +ND GH GD+V+ + L Sbjct: 6 LLDRPAFETALDTATPA-TLAVMDLDHFKILNDTLGHAEGDRVLRTIERLLTGSLPHGST 64 Query: 172 VGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSGPSIHITISAGIAER-CH 229 V RLGG+E+AA ++ + A IL ++ +R N N S +++S G+A R H Sbjct: 65 VARLGGDEYAALFPDTAPETALILMDEVIRHFHANRDPNWPST----LSLSVGLAARPAH 120 Query: 230 KEPISTIIYRADQALYVAKKSGRNRVVCF 258 ++ AD ALY AK GRNRV + Sbjct: 121 ASSPQDLLRAADAALYRAKVEGRNRVAIY 149 >gi|297539234|ref|YP_003675003.1| GAF sensor-containing diguanylate cyclase [Methylotenera sp. 301] gi|297258581|gb|ADI30426.1| diguanylate cyclase with GAF sensor [Methylotenera sp. 301] Length = 329 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 99/204 (48%), Gaps = 15/204 (7%) Query: 59 YGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI--SQLSRIDCLSGLLNHS 116 Y L I V + S +S T L+L +S ++ L Y I L+ D L+GL N + Sbjct: 129 YALGTIAVVDTSPRTLSETQGLMLKDLSKLVITALESRYRAILLENLAMTDHLTGLANRA 188 Query: 117 AFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 F +L S + ++ + D+D FK IND +GH GD+V+ ++ + T Sbjct: 189 RFERTLNSEIAHFRVTGKSFTVFYMDLDNFKIINDTYGHSAGDEVLVEVAHLISKQVRTE 248 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIAER 227 RLGG+EF + E + + ++I++ I +++G + I IS GIA Sbjct: 249 DLPARLGGDEF---GIFMREDNKGLTESLAKRIVDTVTKPITLTTGHQVSIGISIGIATY 305 Query: 228 CHK-EPISTIIYRADQALYVAKKS 250 + + T++ ADQALY+ K++ Sbjct: 306 SDDTQTVDTLMGLADQALYIDKRN 329 >gi|163783280|ref|ZP_02178273.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hydrogenivirga sp. 128-5-R1-1] gi|159881388|gb|EDP74899.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hydrogenivirga sp. 128-5-R1-1] Length = 425 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ +S ID L+G+ N F +SI+ DID+FK ND GH G Sbjct: 246 RLRDISFIDGLTGVANRLRFDDFFRKEWRRARRTKRPISILMLDIDFFKNYNDLLGHLEG 305 Query: 152 DKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209 D+ + ++ + + V R GGEEF + + A +A +R+ IE +I + Sbjct: 306 DECLKNVAKTIQSHIRADVDLVARYGGEEFVVVLPETDLKGALKVAERIRRDIEGLKIAH 365 Query: 210 ISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S S +T+S G+A + KE ++ AD+ALYVAKK GRNRV +S Sbjct: 366 PGSQVSKFVTVSIGVASIVPIDNLKKE---VLLNMADKALYVAKKRGRNRVEAYS 417 >gi|117620240|ref|YP_858643.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561647|gb|ABK38595.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 371 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 17/184 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138 + ++ EL + SR+D L+G+ N + L + LS+V D+DY Sbjct: 182 NADLVAELKAVSEHLKLTSRLDGLTGIANRAHLDYCLERAWRRCHRARAPLSLVLVDVDY 241 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 FKQ ND +GH +GD+ + ++ L V R GGEEFA +S Q A +A Sbjct: 242 FKQFNDLYGHQLGDECLQQVAGLLAEVQRREDDLAARYGGEEFALLLPCTSMQGALQIAE 301 Query: 198 DLRKIIEN----SQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSG 251 ++R +++ Q ++ SG ++ S G+A + IS +I +AD ALY AK +G Sbjct: 302 NVRVALKDLSIPHQKSLVSG---RVSCSFGVATLVPDQSLSISELIQKADAALYQAKHNG 358 Query: 252 RNRV 255 R+R+ Sbjct: 359 RDRI 362 >gi|120555318|ref|YP_959669.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120325167|gb|ABM19482.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 364 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N + L + ++ S++ DID FK +ND++GH GD +I ++ Sbjct: 200 DALTSLANRREGLEQLETEYQRYLRNGRSFSVLLMDIDLFKNVNDSYGHQAGDDMIVLVA 259 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L + R GGEEF ++ EAA A +R + + I+ +G + T Sbjct: 260 RTLTDQSRKVDTIARWGGEEFLVLLPETALTEAAATAERIRSAVASQAID-CAGKRVTAT 318 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS G+A E I ++ RAD+ALY AK GRNRV Sbjct: 319 ISIGVACIQGSESIDRLLQRADEALYQAKTLGRNRV 354 >gi|307726144|ref|YP_003909357.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Burkholderia sp. CCGE1003] gi|307586669|gb|ADN60066.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Burkholderia sp. CCGE1003] Length = 692 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 13/166 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +I QL+ +D L+GL N + I + +++F DID FK IND+ GH Sbjct: 253 GQILQLATLDTLTGLPNRATLTERIEHAIHARRRQRSLFAVLFMDIDGFKTINDSLGHSA 312 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND-LRKIIENSQI 208 GD+V++ + +L+ V RLGG+EF A +S +A LA D L ++ ++ Sbjct: 313 GDQVLSAFAQRLLQCVRAGDTVARLGGDEFVVLAEQLASRNDAGALAEDVLERMRRDTWA 372 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 + S P + + S GIA + + T++ AD A+Y AK++GR+ Sbjct: 373 D--SQP-LQVMPSIGIALFPEDGDTVETLLKHADAAMYEAKRAGRS 415 >gi|254515524|ref|ZP_05127584.1| sensory box/ggdef domain/eal domain protein [gamma proteobacterium NOR5-3] gi|219675246|gb|EED31612.1| sensory box/ggdef domain/eal domain protein [gamma proteobacterium NOR5-3] Length = 654 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPV 150 + I + + D L+GL N LG NE + +++F D+D+FK++ND+ GH Sbjct: 212 DTIERQALFDDLTGLPNRRLLQDRLGQALARAKRNETQAALLFLDLDFFKRVNDSLGHSA 271 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL---GSSEQEAAIL---ANDLRKIIE 204 GD+++ + +L RLGG+EF A G +E +++ LR+ IE Sbjct: 272 GDELLVEVGRRLSAFLRDADTAARLGGDEFVALLTDIEGGTEHVVSVVRRRGEALRRAIE 331 Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 + I+I G IHIT+S G++ + ++ AD A+Y AK GRN + F Sbjct: 332 -APIDI-QGNEIHITVSIGVSLLPDDTNDVDDLLKHADTAMYRAKDDGRNTLRFF 384 >gi|77457563|ref|YP_347068.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gi|77381566|gb|ABA73079.1| putative GGDEF-domain membrane protein [Pseudomonas fluorescens Pf0-1] Length = 495 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 8/164 (4%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I + +D L+ L N F + + L+ + D+D+FK +ND +GH G Sbjct: 323 KIHAQATLDSLTELPNRRGFDLLAAQALHEAHREPKPLTALLLDLDHFKVLNDTYGHMAG 382 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ + L V R GGEEF + + +A +R+ +E + Sbjct: 383 DQVLIGFARDLQSCLRHSDIVCRWGGEEFIVLLKDTDGETGQKIAEKIRQHVEQHEYAY- 441 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +G ++++T+S G + + +++ RAD A+Y AK++GRNR Sbjct: 442 NGHTLNLTVSIGATTLQPDDTLHSLLSRADHAMYRAKQTGRNRT 485 >gi|84387357|ref|ZP_00990377.1| Intracellular signaling protein (PAS, GAF, GGDEF domains) [Vibrio splendidus 12B01] gi|84377806|gb|EAP94669.1| Intracellular signaling protein (PAS, GAF, GGDEF domains) [Vibrio splendidus 12B01] Length = 356 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 8/165 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 Y+ ++ L CL LN A + L K ++ DID+FKQ+ND +GH +GD V+ Sbjct: 184 YDPLTHLPNRRCLFKTLN--AEVEQLKGSLGKGTLAVVDIDFFKQVNDTYGHQMGDVVLK 241 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKI-IENSQINIS 211 +++ L FV R GGEEF E + L +++KI ++ + IS Sbjct: 242 KVANVLSNNTQEGEFVARFGGEEFILWYPNKTPSCVEDKFMTLLQEMKKITLDRKPVTIS 301 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + H +S G + + +I AD+ LY+AK++GR++ + Sbjct: 302 IG-ACHFELSTGDTKGERMSALDKLIKVADECLYIAKQNGRDQFI 345 >gi|110632952|ref|YP_673160.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Mesorhizobium sp. BNC1] gi|110283936|gb|ABG61995.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Chelativorans sp. BNC1] Length = 730 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 24/199 (12%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130 I+L LG L S R L+ D L+ L N + F I ++ + + + + Sbjct: 278 IALFLGRKLRRASLALHASERRARHLASHDVLTRLPNRAFFEKKLDRVIDTVQAGHGEAA 337 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL-GSSE 189 ++F D+D FK +ND GH GD+++ + +L G V R+GG+EF L S Sbjct: 338 LLFLDLDRFKNVNDTLGHRAGDELVRETAVRLSTAIGNAGVVARIGGDEFGMVILRRSGA 397 Query: 190 QEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIA-------ERCHKEPISTIIYRAD 241 +EAAI ++ ++++ ++ + SG +H+ +S G+A ER ++ +AD Sbjct: 398 REAAIELSE--RLLQALKVPFVISGEPVHVGVSIGVALAPEAGSER------QDLLRKAD 449 Query: 242 QALYVAKKSGRNRVVCFSD 260 ALY AKK GR FS+ Sbjct: 450 IALYDAKKRGRGCYQIFSE 468 >gi|226311730|ref|YP_002771624.1| signaling protein YkoW [Brevibacillus brevis NBRC 100599] gi|226094678|dbj|BAH43120.1| probable signaling protein YkoW [Brevibacillus brevis NBRC 100599] Length = 805 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 10/163 (6%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I+ L+ D L+GL N I ++++ ++F D+D+FK +ND+ GH G Sbjct: 373 KINYLAFHDSLTGLPNRRFVEQQLDQVIMEAQKTDQQVYVLFLDLDHFKLVNDSLGHDFG 432 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ S +L G V RLGG+EF +E+E + +AN++ + IE Q Sbjct: 433 DLLLQEASLRLRECVGKKGTVYRLGGDEFMVILTDVTEREVSSMANEINETIE--QAFFI 490 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253 G ++IT S GI+ +++ R AD A+Y AK G+N Sbjct: 491 HGHELYITTSIGISRYPEDGQDRSVLMRNADAAMYAAKDKGKN 533 >gi|255307409|ref|ZP_05351580.1| putative signaling protein [Clostridium difficile ATCC 43255] Length = 628 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 14/164 (8%) Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+ L N L G+ ++ + + DID FK NDN+GH GDKVI ++D + Sbjct: 463 DGLTKLYNRRYLEQQLDLFNGTRDKNMVAILVDIDCFKSYNDNYGHLAGDKVIVKVTDII 522 Query: 163 VVVF-GTPMFVGRLGGEEF-----AAAALGSSE-QEAAILANDLRKIIENSQI-NISSGP 214 VF + R GGEE + ++G E + + K++E I +I S Sbjct: 523 RSVFIDITEHIIRYGGEEILILVDSIESIGVEEIDNIELYIKRVFKLLEFEGIEHIYSKI 582 Query: 215 SIHITISAGIA-ERCH-KEPISTIIYRADQALYVAKKSGRNRVV 256 +ITISAG++ +RCH ++ + +I AD+ LY +KK+GRN+ + Sbjct: 583 KNYITISAGVSIKRCHSRKDVEILIEDADKNLYKSKKAGRNQYI 626 >gi|254458235|ref|ZP_05071661.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207085071|gb|EDZ62357.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 617 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 8/168 (4%) Query: 99 RISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ S D ++GL N + E S++ D+D+FK +ND +GH VG Sbjct: 439 KLKDTSLRDGMTGLYNRRFLEEVIDKIMHQATRSKETYSVLMLDVDFFKMVNDTYGHDVG 498 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI + L R GGEEF +S++ +A+ + ++ Sbjct: 499 DRVIVEIGKVLKDNIRDADLAIRYGGEEFVVMLHNASDEGTQEVASKIHSAFAALSFDVG 558 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +G + T+S GI++ + I I AD ALYVAK +GRN++V + Sbjct: 559 TGEMMKKTMSIGISKFPKDGDTIWKCIKFADTALYVAKTTGRNKIVHY 606 >gi|117618414|ref|YP_857472.1| PAS/GGDEF domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559821|gb|ABK36769.1| PAS:GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 809 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + +L+ D L+ L N L E +L+++F D+D+FK IND FGH GD ++ Sbjct: 509 MRRLAFYDPLTNLPNRRLLQQRLKEAMESEAQLALLFIDLDHFKPINDTFGHETGDVLLN 568 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +++++ V RLGG+EF L + EA +A+ L + + + I + Sbjct: 569 MVAERMRHCVRERDLVARLGGDEF-VILLPDTGDEALAVADHLHQSLRHP-FRIDEEQEL 626 Query: 217 HITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I+ S G+A H T+++ ADQA+Y AK GR RV F+ Sbjct: 627 RISSSIGVALYPEHGTDPKTLMHHADQAMYQAKGRGRGRVCLFT 670 >gi|120553272|ref|YP_957623.1| diguanylate cyclase [Marinobacter aquaeolei VT8] gi|120323121|gb|ABM17436.1| diguanylate cyclase [Marinobacter aquaeolei VT8] Length = 318 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 9/158 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N AF ++ ++ L+++ D+D+FK IND GH GD+V+ +S Sbjct: 159 DELTGLHNRRAFFEFGAQLLNQAVRHHTPLTLIMMDLDHFKAINDTHGHDAGDEVLRQVS 218 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L V R+GGEEFA + + A LA L +++ ++ G SI ++ Sbjct: 219 ALLQARIRDCDIVARMGGEEFAVLLPETGLEMARTLAERLLGLLQELTVH-HGGQSISLS 277 Query: 220 ISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 S GI+ ++ + ++ RAD+A+Y +K GR+RV Sbjct: 278 ASFGISLLGSRDRRLEDLMCRADEAMYQSKARGRSRVT 315 >gi|330811466|ref|YP_004355928.1| response regulator, PleD/VieA family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379574|gb|AEA70924.1| Putative response regulator, PleD/VieA family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 763 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 15/186 (8%) Query: 81 LLGYISGSILK--ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------I 131 LL I G IL E ++ +I+ L+R D L+GL N + I L + Sbjct: 290 LLLEIEGIILDITERKLAEEKIALLARTDGLTGLANRATMIERLHQAFAAARRGAAPFAM 349 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-Q 190 + D+D+FK+IND GHP+GD ++ ++ ++ V RLGG+EFA L E Sbjct: 350 FYLDLDHFKRINDTLGHPIGDLLLQEVAKRIKGCTRENDVVARLGGDEFAILQLDVHEAT 409 Query: 191 EAAILANDLRK-IIENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAK 248 A LA +R ++ ++ G + I++S GIA + +++ ++D ALY +K Sbjct: 410 HCAALAGKIRDTLVAPYSLD---GNDVRISVSIGIALYTPQSLSADSLMAQSDMALYRSK 466 Query: 249 KSGRNR 254 + GRN+ Sbjct: 467 EKGRNQ 472 >gi|307721000|ref|YP_003892140.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM 16294] gi|306979093|gb|ADN09128.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM 16294] Length = 614 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 26/206 (12%) Query: 71 LVIISITISLLLGYISGS----ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124 L ++ ++++L Y + + +LK F +Y+ D L+GL N FI L S Sbjct: 157 LAFFTVVLTIVLLYAAKNTYEYLLKSRFQAYH--------DYLTGLGNRRYFIEHLASSV 208 Query: 125 ---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEF 180 ++ ++ D+DYFK IND GH VGDK++ +S +L + V RLGG+EF Sbjct: 209 KENKDKYTYLLLIDLDYFKTINDTLGHDVGDKLLIEVSQRLTKLSSVHHNIVARLGGDEF 268 Query: 181 A--AAALGSSE---QEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE-PIS 234 + A + E EA +N + K I+ + S+HI+ S G++ + + + Sbjct: 269 CILSDAFDTKELCLAEAEEFSNKILKTIKEAY--FIEDSSLHISASIGVSIINNPQLNAN 326 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260 + AD A+Y AK +GR+ V+ F+D Sbjct: 327 DFLKEADIAMYEAKHNGRDDVIIFND 352 >gi|315500134|ref|YP_004088937.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Asticcacaulis excentricus CB 48] gi|315418146|gb|ADU14786.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Asticcacaulis excentricus CB 48] Length = 707 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 16/178 (8%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 G L E + RI+QL+ D L+GL N + + +S + + L++ D+D F Sbjct: 270 GIDLTEQKAAEARIAQLAHYDPLTGLGNRTLYTHEIEQALSRVQRHGHHLALHCLDLDRF 329 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K +ND+FGH GD ++ + ++L + F+ R+GG+EFA ++A LA + Sbjct: 330 KTVNDSFGHLAGDALLRQVGERLRLCVRKGDFIARMGGDEFAIIQNIERPEDARCLAERV 389 Query: 200 RKIIEN----SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +++++ + I + +G S+ I ++ A + ++ RAD ALY K GRN Sbjct: 390 IEVMKSPFDINGIRLEAGVSVGIALAPEDAADA-----NNLLSRADLALYRVKSEGRN 442 >gi|124265497|ref|YP_001019501.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum PM1] gi|124258272|gb|ABM93266.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum PM1] Length = 806 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 91/174 (52%), Gaps = 14/174 (8%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 L++ + I L+ D L+GL N AF++ + + E L+++F D+D+FK++ Sbjct: 363 LRDRHAAQAHIHHLAHHDALTGLPNRLAFMAEIDQLMARAAASREALALLFIDLDHFKRV 422 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+ GH GD+++ ++ ++ V V R GG+EF G E +A+ RK+ Sbjct: 423 NDSLGHLAGDELLKTVAQRIGAVLRASDVVARFGGDEFMVLIGGGPRLED--VADVARKL 480 Query: 203 IENSQINISS--GPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252 + ++ + + G SI +T S GIA + I+ +I AD A+Y AK GR Sbjct: 481 LAAIEVPLDAEVGRSISVTPSIGIA-MFPGDGITPAELIKHADTAMYRAKARGR 533 >gi|312142907|ref|YP_003994353.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus'] gi|311903558|gb|ADQ13999.1| diguanylate cyclase [Halanaerobium sp. 'sapolanicus'] Length = 507 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 16/167 (9%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + S EK + I+F DID FK+INDN+GH VGDKV+ ++ Sbjct: 346 DQLTGLANRDLVVKSFSDLKEKAKNRQKKIGILFLDIDNFKEINDNYGHDVGDKVLKEVA 405 Query: 160 DQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSI 216 D L + + RLGG+EF A+ S E+ + ++I++ + I + Sbjct: 406 DLLSSSLRSNDKLFRLGGDEFVITVTAINSMEEIKQV----AKRIVDAFKEPLIVDQSNF 461 Query: 217 HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 I++S GI+ H + +S ++ AD A+Y AK+ + + + D E Sbjct: 462 FISVSLGISIYPEHGQDLSELLKNADNAMYRAKQQKED-YILYEDFE 507 >gi|307720554|ref|YP_003891694.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306978647|gb|ADN08682.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 411 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 8/138 (5%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGS 187 ++ + DIDYFKQ ND +GH GD + ++ L P +V RLGGEEF + Sbjct: 269 VTFMMLDIDYFKQYNDTYGHVEGDYALKSVAKVLKGTLKRPGDYVFRLGGEEFGVLLSDT 328 Query: 188 SEQEAAILANDLRKIIENSQ-INISSGPSIHITISAG----IAERCHKEPISTIIYRADQ 242 E +A LA ++ + + + I+ SS + +TIS G IA+ E + +I RAD+ Sbjct: 329 DETNSANLAREIGDAVRDLEIIHESSTVNQFLTISVGVVCCIADDALDEEV--LISRADE 386 Query: 243 ALYVAKKSGRNRVVCFSD 260 LY AK+ GR+R V S+ Sbjct: 387 MLYEAKEGGRDRYVITSN 404 >gi|316935188|ref|YP_004110170.1| hemerythrin-like metal-binding domain-containing diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315602902|gb|ADU45437.1| diguanylate cyclase with hemerythrin-like metal-binding domain [Rhodopseudomonas palustris DX-1] Length = 506 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 9/187 (4%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFD 135 LG + + +EL ++ S D L+ + N F +SL G + LS++ D Sbjct: 156 LGAAAAQV-RELQHQLEQVRLESMTDPLTEVGNRKFFETSLARLIAAGETSGPLSLLIID 214 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 +D FKQ ND GH VGD V+ + + V R GG+EFA G+ ++A +L Sbjct: 215 LDNFKQFNDRHGHVVGDDVLRLAAATIKHTCRRDDVVCRYGGDEFAIVLPGTGLRDALLL 274 Query: 196 ANDLRKIIENSQINISSGPSI--HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 +R I +++ S + IS G AE E + + RAD +Y AK++ R+ Sbjct: 275 GEKIRAAIAARELHRRSTHESLGRLLISIGSAEFRRGETVEDFVERADHWMYAAKQASRS 334 Query: 254 RVVCFSD 260 R +C ++ Sbjct: 335 RSLCTAE 341 >gi|254524937|ref|ZP_05136992.1| hypothetical protein SSKA14_4077 [Stenotrophomonas sp. SKA14] gi|219722528|gb|EED41053.1| hypothetical protein SSKA14_4077 [Stenotrophomonas sp. SKA14] Length = 710 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 15/146 (10%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 + +++F D+D FKQ+ND +GH GD ++ ++++ + + RLGG+EF Sbjct: 300 RFAVMFMDLDGFKQVNDAYGHQAGDALLVAVAERTRQLLRPHDMLARLGGDEFVLVVRIE 359 Query: 188 SEQEAAILANDLRKIIENSQINISSGP-----SIHITISAGIAERC--HKEPISTIIYRA 240 +++ LA R+I++ + SGP + +T S G+A C H ++ A Sbjct: 360 HDEDLPTLA---RRILQ----AVGSGPLLPDNELQVTASIGVAI-CPDHAASERQLMAFA 411 Query: 241 DQALYVAKKSGRNRVVCFSDIENNTC 266 D A+Y AK+SGRN V F+D N++ Sbjct: 412 DAAMYQAKESGRNAFVLFADWMNDSA 437 >gi|254506221|ref|ZP_05118365.1| diguanylate cyclase [Vibrio parahaemolyticus 16] gi|219551039|gb|EED28020.1| diguanylate cyclase [Vibrio parahaemolyticus 16] Length = 344 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 7/161 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKV 154 +R++ L+ D L+G N + +++ E+L+ ++ DID FK IND++GH GD V Sbjct: 176 DRLNSLAHQDALTGAQNRLSLVTTFDQKGEQLNGSYLLTLDIDDFKVINDSYGHAAGDDV 235 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKIIENSQINISS 212 + + +L + G + R+GGEEF Q + LA+ L+ I I + Sbjct: 236 LKQVVSRLSSLVGEQN-IFRMGGEEFVLVLPNKIVKHQGLSTLAHKLQGCIVAKPI-LFQ 293 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G + +T SAGI + + + + AD LY+AKK+G+ Sbjct: 294 GNELEVTFSAGIDQYLKVKGLDKTLSNADHDLYLAKKAGKR 334 >gi|209519892|ref|ZP_03268674.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160] gi|209499652|gb|EDZ99725.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160] Length = 649 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 17/184 (9%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQIND 144 L ++ +L+R D L+GL N + S ++ +++ D+D FK IND Sbjct: 202 LLLARENSHRLARQDSLTGLPNRARLSELLLERTGESRARQDQSFAVLLIDLDGFKAIND 261 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKII 203 + GH GD+++ + +L V + VGRL G+EF A + GS + ++ +LA+ + + + Sbjct: 262 SLGHAAGDQILQEAATRLRDVLPSGDQVGRLAGDEFVAISDGSGQLRDVRVLADRIVRTL 321 Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ + S +HI S GIA E P ++ AD+ALY K+SG++ F D Sbjct: 322 --ARPFVLSEALVHIGASVGIALYPEHAQTGP--QLLICADRALYSVKRSGKSAFAVF-D 376 Query: 261 IENN 264 E + Sbjct: 377 AEKH 380 >gi|218440176|ref|YP_002378505.1| diguanylate cyclase [Cyanothece sp. PCC 7424] gi|218172904|gb|ACK71637.1| diguanylate cyclase [Cyanothece sp. PCC 7424] Length = 286 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 37/237 (15%) Query: 33 IFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVI-ISITISLLLGYISGSILK 91 I FS A + F A+I +T Y +I N S+ + +TI+ LL Sbjct: 61 ILFSFLCAVLWFAADI------ITKNYPYPWIPYWNASVRLGFFLTITYLLW-------- 106 Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL +Y R L+R D L+G+ N F+ L + ++V+ D+D FK +N+ Sbjct: 107 ELKKAYERERYLARTDGLTGITNRRFFLEVLHWEVQRFRRHQRPFTLVYLDVDNFKTVNN 166 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII- 203 +FGH GD ++ +SD + + V RLGG+EFA ++ Q A + L+K + Sbjct: 167 SFGHSRGDDLLCLISDTIKANIRSLDVVARLGGDEFALLLPETNYQAAEAVLTRLQKNLL 226 Query: 204 -----ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E+ + S G + I E I ++ D +Y K +G+NR+ Sbjct: 227 ASVARESFPVGFSMGAVTFLDIP---------ESIDKMMELVDHLMYDVKNTGKNRL 274 >gi|157376469|ref|YP_001475069.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] gi|157318843|gb|ABV37941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] Length = 1020 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 17/172 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS------YNEK-LSIVFFDIDYFKQINDNFGHPVGD 152 I + + D L+GL N + LG+ N+K +++F D+DYFK++ND+ GH +GD Sbjct: 577 IWKQANYDPLTGLPNRRMLLEYLGTELLKSDRNKKHFALMFLDLDYFKEVNDSLGHDIGD 636 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINI 210 ++ + +L V RLGG+EF +A+ + + N L ++ E ++ Sbjct: 637 LLLVETAKRLKGCIRESDVVARLGGDEFTVVLSAIQDHKGVERVAENILSRLAEPFNLDN 696 Query: 211 SSGPSIHITISAGIAERCHKEPISTI---IYRADQALYVAKKSGRNRVVCFS 259 S ISA I + + S+I + ADQA+Y AK+ GRNR F+ Sbjct: 697 ESA-----YISASIGITLYPDDASSIDGLLKHADQAMYAAKEQGRNRYHYFT 743 >gi|119899139|ref|YP_934352.1| hypothetical protein azo2849 [Azoarcus sp. BH72] gi|119671552|emb|CAL95465.1| conserved hypothetical membrane protein [Azoarcus sp. BH72] Length = 620 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 11/162 (6%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GL N ++S L+++ D+DYFK +ND++GH GD V+ L+ Sbjct: 450 DAMTGLNNRRFLEEYMDTLVASARRRRIPLAVLVLDLDYFKVVNDSYGHDAGDAVLKALA 509 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGPSIHI 218 L V R GGEEF L ++ EAA+ +A ++R +E ++ + +G + Sbjct: 510 GVLKRTVRASDMVIRFGGEEF-LIVLQEADAEAALKVAENIRSAVEQMRVQV-AGAVLQK 567 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 TIS G++ + I AD ALY AK++GRN+VV F+ Sbjct: 568 TISIGLSMFPDDSDTFWQAIKFADVALYRAKENGRNQVVRFT 609 >gi|78355597|ref|YP_387046.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218002|gb|ABB37351.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 595 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 14/165 (8%) Query: 107 DCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 D L+GL N S F+ L + + S+V D+D FKQIND GH GD V+ + Sbjct: 162 DPLTGLPNRSLFLEKLDARVNGGRAARDGGASVVMIDVDRFKQINDVLGHEAGDGVLRVV 221 Query: 159 SDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +D+L + G + RLGG+EF A G +E+ A + ++++++ + G + Sbjct: 222 ADRLRGILGGNDALCRLGGDEFCLLLAGGGRAEEVLARVQQIQQRLMDSVD---TGGRRL 278 Query: 217 HITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 H+T+S G+A R + ++ AL AK++G + FSD Sbjct: 279 HLTVSVGVATHRPGQNAPEDMMRNGGIALQHAKRAGGGGLEVFSD 323 >gi|86146786|ref|ZP_01065106.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrio sp. MED222] gi|85835436|gb|EAQ53574.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Vibrio sp. MED222] Length = 356 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 8/165 (4%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 Y+ ++ L CL LN A + L K ++ DID+FKQ+ND +GH +GD V+ Sbjct: 184 YDPLTHLPNRRCLFKTLN--AEVEQLKGSLGKGTLAVVDIDFFKQVNDTYGHQMGDVVLK 241 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKI-IENSQINIS 211 +++ L FV R GGEEF E + L +++KI ++ + IS Sbjct: 242 KVANVLSHNTQEGEFVARFGGEEFILWYPNKTPSCVEDKFMTLLQEMKKITLDRKPVTIS 301 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G + H +S G + + +I AD+ LY+AK++GR++ + Sbjct: 302 IG-ACHFELSTGDTKGERMSALDKLIKVADECLYIAKQNGRDQFI 345 >gi|119776759|ref|YP_929499.1| signal transduction protein [Shewanella amazonensis SB2B] gi|119769259|gb|ABM01830.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain protein [Shewanella amazonensis SB2B] Length = 709 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 12/176 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 L E S RI QL+ D L+GL N + + L + + +++ D+D FK + Sbjct: 254 LTERKESEARIYQLAYYDVLTGLANRTLLMERLKAAIALCERSKQIGALLIIDLDNFKIL 313 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLR 200 ND GH VGD ++ ++D+L+ V RLGG+EF LG E+ AA+ A + Sbjct: 314 NDTMGHDVGDALLKMVADRLLQAVRRCELVARLGGDEFVIVMENLGIDERGAALKAKSVG 373 Query: 201 KIIEN--SQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253 + + + + +G + + S GIA P + ++ +AD A+Y AK++G+N Sbjct: 374 QKVRGLLNDPFMLAGKQLRTSPSIGIALFAEGRPGLEELLKQADVAMYQAKEAGKN 429 >gi|330811623|ref|YP_004356085.1| diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379731|gb|AEA71081.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 337 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 14/174 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 +L I + +L+ D L+ + N +L + E LS++ D+D FK IND Sbjct: 169 QLQIQLDENRKLAETDALTRVANRYRLDQALPLACERAQRFREPLSLIAMDVDDFKDIND 228 Query: 145 NFGHPVGDK-VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD +I + G + V R GG+EF ++ +A +LA +R+ + Sbjct: 229 RYGHAFGDAALIQVVQSVKRCERGGDLLV-RWGGDEFIMILPNTTLADARLLAESIRRGL 287 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + + IT+S G+ +R E + +++RADQALY +K SG+N V+C Sbjct: 288 SD----LLPVGDFQITMSFGVVQRLEDEQHAVLLHRADQALYRSKMSGKN-VIC 336 >gi|221196783|ref|ZP_03569830.1| WspR [Burkholderia multivorans CGD2M] gi|221203452|ref|ZP_03576471.1| WspR [Burkholderia multivorans CGD2] gi|221177386|gb|EEE09814.1| WspR [Burkholderia multivorans CGD2] gi|221183337|gb|EEE15737.1| WspR [Burkholderia multivorans CGD2M] Length = 344 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 3/131 (2%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALG 186 +LS++ D+D+FK ND +GH GD V+ ++ + + + R GGEEFA G Sbjct: 205 ELSLLMIDVDHFKLYNDTYGHVSGDHVLRQVATTIAQCLRPSGDLAARFGGEEFAVVMPG 264 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQAL 244 +S A +L +R ++ ++ + H+T+S G A P + +I AD+AL Sbjct: 265 TSAGAARLLGEKIRLAVDALRLEHGQSTAGHVTVSIGGASIVPAPGLPTTALIEAADRAL 324 Query: 245 YVAKKSGRNRV 255 Y AK+ GRNRV Sbjct: 325 YRAKRDGRNRV 335 >gi|221197349|ref|ZP_03570396.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Burkholderia multivorans CGD2M] gi|221204022|ref|ZP_03577040.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Burkholderia multivorans CGD2] gi|221176188|gb|EEE08617.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Burkholderia multivorans CGD2] gi|221183903|gb|EEE16303.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Burkholderia multivorans CGD2M] Length = 659 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 17/186 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDID 137 SG + E + R+++L+ D L+GL N A G ++ I+F D+D Sbjct: 210 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIRTVIAQQTGDTPGQVGILFLDLD 269 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193 FK++ND++GH GD+++ +S + + + RLGG+E F E A Sbjct: 270 NFKRVNDHYGHITGDRLLQDVSAIINGCLPSGATLARLGGDEFLVLFEQGTRALLEATAQ 329 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I+ LR I + + + SI I + H + + T+I AD A+YVAK++G++ Sbjct: 330 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRNADTAMYVAKEAGKH 384 Query: 254 RVVCFS 259 FS Sbjct: 385 TYRVFS 390 >gi|218670505|ref|ZP_03520176.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium etli GR56] Length = 471 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 16/174 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 EL ++ +RI S D L+ L N +L + +K SI+ D+D FK IND Sbjct: 20 ELELAKDRIEHNSLHDPLTALANRRKLDIALENLTHDGRRQRQKFSILHIDLDRFKDIND 79 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA----NDLR 200 GH GD ++ S L V R+GG+EF A ++E A LA ++R Sbjct: 80 TLGHAAGDAMLVHASKVLAKNVRGSDLVARIGGDEFVILAGDVGDKEMAELATRIVEEMR 139 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + I+ + G SI I ++ GI K ++ AD ALY AK +GRNR Sbjct: 140 QPIDFQGFSCRCGVSIGIALANGIHIDARK-----VLINADIALYRAKSTGRNR 188 >gi|163748444|ref|ZP_02155698.1| sensory box protein [Shewanella benthica KT99] gi|161332022|gb|EDQ02699.1| sensory box protein [Shewanella benthica KT99] Length = 819 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 10/163 (6%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N A IS + +L+ VF D+D+FK IND+FGH GDK++ L+ Sbjct: 398 DPLTQLPNRMALISLIEQDIRHAEVQQGQLATVFIDVDFFKHINDSFGHLAGDKILVELA 457 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHI 218 +L + G + R+GG+EF E LA + LRK E I I I + Sbjct: 458 GRLTSLKGAEDTLARIGGDEFVVLLPQVEGNEELTLALSKLRKAFEQPFI-IDDNEPIRL 516 Query: 219 TISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSD 260 T S G++ H S T++ AD A + AK GRN +++ Sbjct: 517 TASMGVSVFPHDGKDSYTLLRNADSAKHRAKLDGRNSYAFYTE 559 >gi|110679010|ref|YP_682017.1| GGDEF/EAL domain-containing protein [Roseobacter denitrificans OCh 114] gi|109455126|gb|ABG31331.1| GGDEF/EAL domain protein [Roseobacter denitrificans OCh 114] Length = 619 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 20/179 (11%) Query: 99 RISQLSRI-------DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 R+ QL++ D L+GL N F I +L + + ++++ D+D FK +ND Sbjct: 161 RLHQLAKSVAKDANEDALTGLSNRRHFEVELKTWIENLKKHGTEFAVIYIDLDRFKFVND 220 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKII 203 GH GD+++ ++D L + G V RLGG+EF L S + LA+D I+ Sbjct: 221 TLGHDAGDRLLVSVADMLRDLTGDCDLVARLGGDEFVILRPLAQSALNISSLADD---IV 277 Query: 204 ENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 Q + G S + S G+A H E ++ AD+ALY AK G+ R F++ Sbjct: 278 GTMQAPFACDGKSTACSASVGVAIANKHMEHPEQVVADADEALYHAKSQGKGRWSFFTE 336 >gi|24373074|ref|NP_717117.1| sensory box protein [Shewanella oneidensis MR-1] gi|24347254|gb|AAN54561.1|AE015596_1 sensory box protein [Shewanella oneidensis MR-1] Length = 998 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 13/174 (7%) Query: 96 SYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 S + I + + D L+GL N SA I + +++F D+DYFK++ND GH Sbjct: 564 SEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFKEVNDTLGH 623 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--ILANDLRKIIENS 206 +GD ++ + +L V RLGG+EF ++ + + + LR+I E Sbjct: 624 AMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHILRRIAEPY 683 Query: 207 QINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259 + + HI+ S GI P I ++ ADQA+Y AK GRNR F+ Sbjct: 684 YL---GEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFT 734 >gi|51245404|ref|YP_065288.1| hypothetical protein DP1552 [Desulfotalea psychrophila LSv54] gi|50876441|emb|CAG36281.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 330 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 17/199 (8%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------- 124 VII T +LL +I ++L I + + + D L G N F L + Sbjct: 115 VIIYDTTALLEA--KATINEQLDI----VKKQASTDPLLGCYNRKMFNDLLATEVMRANR 168 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 +N S++ DID FK +ND +GH VGD+V+ LS R GGEEF Sbjct: 169 HNHPFSLIMIDIDNFKSVNDTYGHLVGDEVLKGLSSLTAKSIRESDLFARWGGEEFIILL 228 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQAL 244 + AA++A +R I N +G + T S G++E +I AD+AL Sbjct: 229 PETYLTGAAVVAEKIRLNI----ANYDNGTAGKRTCSFGVSEFSIGTNPEILINNADKAL 284 Query: 245 YVAKKSGRNRVVCFSDIEN 263 Y AK +G+N+V+ + D +N Sbjct: 285 YAAKGNGKNQVMLYRDEQN 303 >gi|17228714|ref|NP_485262.1| hypothetical protein all1219 [Nostoc sp. PCC 7120] gi|17130566|dbj|BAB73176.1| all1219 [Nostoc sp. PCC 7120] Length = 737 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 15/174 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL + + + L+ D L+GL N F L N L ++F D+D FKQ+ND Sbjct: 557 ELKLKEDHLRYLAYHDALTGLPNRKYFAEQLYESINWAKDNNLSLGLLFIDLDGFKQVND 616 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKI 202 + GH +GD+++ ++ +L V RLGG+EF A+ + + A + L I Sbjct: 617 SLGHEMGDRLLVVIAQRLSNSLRASDTVARLGGDEFTVILQAIPNVQVAAKVAEKILANI 676 Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 E +N G + +++S GI+ +P T++ +AD A+Y AK G+NR Sbjct: 677 TEPIVLN---GCTAKVSVSIGISIYPETSLDP-DTLLKKADAAMYRAKHLGKNR 726 >gi|84515194|ref|ZP_01002557.1| hypothetical protein SKA53_13258 [Loktanella vestfoldensis SKA53] gi|84511353|gb|EAQ07807.1| hypothetical protein SKA53_13258 [Loktanella vestfoldensis SKA53] Length = 597 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 14/174 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNF 146 +EL + + Q + D L+ L N AF +L G+ + +++++ D+D FK +ND Sbjct: 144 RELDEARQALEQAAYHDPLTELPNRRAFERALEHCLGAADGRVALLHLDLDRFKWVNDTL 203 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRK 201 GH GD V+ + ++ G R+GG+EF + + Q + L + Sbjct: 204 GHQSGDAVLVTAAQRISQAVGNRGQTYRVGGDEFMVLLTQGISANLAHQTGTAIVKALTR 263 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I+ +Q ++ G I I I+ G+A ++ +T+I AD ALY AK++GRN+V Sbjct: 264 PIDLAQRQVTIG--ISIGIATGVA---GQDTAATVIAHADVALYEAKRNGRNQV 312 >gi|169342598|ref|ZP_02863650.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens C str. JGS1495] gi|169299370|gb|EDS81437.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens C str. JGS1495] Length = 624 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 KE+ I +R++ D L+ + N F S ++K +++F D+D+FK+IN Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198 DN+GH VGD+V+ ++ +GR+GG+EFAA S++E + N Sbjct: 239 DNYGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 LRK I+ + + SI ITI E+ I ++ +D+A+Y K Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343 >gi|113970424|ref|YP_734217.1| response regulator receiver modulated diguanylate cyclase [Shewanella sp. MR-4] gi|114047383|ref|YP_737933.1| response regulator receiver modulated diguanylate cyclase [Shewanella sp. MR-7] gi|113885108|gb|ABI39160.1| response regulator receiver modulated diguanylate cyclase [Shewanella sp. MR-4] gi|113888825|gb|ABI42876.1| response regulator receiver modulated diguanylate cyclase [Shewanella sp. MR-7] Length = 544 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLNH+ + + N + I D+D+FKQ+ND +GH GDKV+ + Sbjct: 384 DSLTGLLNHTQILVAARRCFNLAKRINSSVCIAMLDLDHFKQVNDTYGHSGGDKVLLAFA 443 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L F+GR GGEEF A N +R+ + + + +T Sbjct: 444 HLLQQSLRPVDFMGRYGGEEFMLVLPDLPAPLAIAKLNAIRESFSHI-VFVEDAAEFKVT 502 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +S G+A + AD+ LY AK++GRNR++ Sbjct: 503 LSGGLAFSAECGEFQDCLLLADKNLYEAKRTGRNRLIT 540 >gi|117921925|ref|YP_871117.1| diguanylate cyclase [Shewanella sp. ANA-3] gi|117614257|gb|ABK49711.1| diguanylate cyclase [Shewanella sp. ANA-3] Length = 302 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ QLS D L+GL N L + SI+ D+D+ K+IND GH G Sbjct: 134 QLRQLSDTDQLTGLYNRRRLDRDLQLLFDTFSRHRIPASILVLDLDHLKRINDQLGHQAG 193 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+VI ++D F R GG+EF A G +A + A L + +S Sbjct: 194 DRVIMAVADTCQQQFRKTDSAYRFGGDEFVIALPGVDHDQAIVFAEYLCDCCFKALQQLS 253 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + T+S G+A + + RAD ALY AK+ G+NRV+ S Sbjct: 254 V-KGLFATVSIGVASIEAGDKSYEDTLKRADAALYQAKRDGKNRVIANS 301 >gi|329295713|ref|ZP_08253049.1| diguanylate cyclase [Plautia stali symbiont] Length = 337 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 2/125 (1%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D+FK +ND++GH GD ++A +S L G R GG+E +S++ Sbjct: 204 LLLLDVDHFKVVNDSWGHEAGDFLLAEISALLRNYVGLQDIPARFGGDELGVIVHQASDE 263 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 LA L++ I SQ+ + + ++S GIA E +S + AD+ALY K++ Sbjct: 264 SVVELAERLKEKI--SQLRLPASAEFRCSVSIGIAPAVSAESLSDWLSHADEALYEVKRA 321 Query: 251 GRNRV 255 GRN V Sbjct: 322 GRNGV 326 >gi|296534761|ref|ZP_06897129.1| exopolyphosphatase [Roseomonas cervicalis ATCC 49957] gi|296264912|gb|EFH11169.1| exopolyphosphatase [Roseomonas cervicalis ATCC 49957] Length = 686 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 12/169 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHP 149 EL + + L+ D L+GL N ++ + + ++++F D+D FK +ND FGHP Sbjct: 242 ELKEAERKADFLASHDVLTGLPNRASLHPAFARLRQGGGVALMFIDLDGFKHVNDAFGHP 301 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRKIIE 204 VGD+++ ++ +L + V RLGG+EF G E A L L IE Sbjct: 302 VGDRLLVEVARRLRGLLRAEDEVLRLGGDEFLLLLRRHGQPGEVESVAERLREALSLPIE 361 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + PSI I++ H + + RAD ALY AK +GR+ Sbjct: 362 TAGQRLQVTPSIGISLCPE-----HGTDVDELAKRADLALYEAKAAGRD 405 >gi|328472979|gb|EGF43827.1| GGDEF family protein [Vibrio parahaemolyticus 10329] Length = 381 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 9/172 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 +L + ++ LS D L+ L N + I +L + L + D DYFKQ+ND Sbjct: 194 QLLTANKQLEALSLTDSLTQLPNRRSAIKTLKKLWDDTEHKTLPLVCIMIDADYFKQVND 253 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD V+ L+ L F + V RLGG+EF + +A +RK + Sbjct: 254 TCGHEAGDLVLIELAQALKYHFRSDDIVCRLGGDEFFVICPDTGLDGGLYVAEMVRKQVS 313 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRV 255 + P +IS G+AER T + R AD+++Y+AK+ G+NRV Sbjct: 314 QMLVPTCYEP-WRGSISVGVAERTENMNTYTDLIRAADESVYLAKQEGKNRV 364 >gi|160877438|ref|YP_001556754.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS195] gi|160862960|gb|ABX51494.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS195] gi|315269640|gb|ADT96493.1| response regulator receiver modulated diguanylate cyclase [Shewanella baltica OS678] Length = 310 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 16/164 (9%) Query: 106 IDCLSGLLNHSAFISSLGS------YNE-KLSIVFFDIDYFKQINDNFGHPVGDK----V 154 +D L+G+ N F L NE LS+V D+D+FK+ ND +GH GD+ V Sbjct: 146 LDSLTGVANRRQFEQRLPEIWKHCCRNELALSVVMLDVDFFKRFNDRYGHQEGDQCLRHV 205 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +SD L+ FV R GGEEF + A A + ++ + Sbjct: 206 AKAISDSLLRATD---FVARYGGEEFICILPETKLAGAIHTAQKIVNAVQALHLEHLESS 262 Query: 215 SIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 +TISAG+A K ++ +I ADQ LY+AK+SGRN+VV Sbjct: 263 FQEVTISAGVASVLPKSDLTWQALIETADQQLYLAKESGRNQVV 306 >gi|83311851|ref|YP_422115.1| GGDEF domain-containing protein [Magnetospirillum magneticum AMB-1] gi|82946692|dbj|BAE51556.1| FOG: GGDEF domain [Magnetospirillum magneticum AMB-1] Length = 419 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 26/183 (14%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------------------LSIVFFDIDYFK 140 +S +S++ +S L++ S+ +YN + LS+ F D+D FK Sbjct: 231 LSGMSQLHFMSQLVDQSSHDGLTRAYNRRVGEEMLVQQFVTAARSKIPLSLAFVDLDNFK 290 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND +GH GD + S L V + R GGEEF A + AAI LR Sbjct: 291 SINDKYGHEEGDNALRIASASLRKVLRRGDILIRWGGEEFIAVMPNTDPAGAAIAIARLR 350 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVCF 258 I P +T S G+AER E + ++ RAD +Y AK+SG++RV+ Sbjct: 351 S--AGLGIRPDGRP---LTASIGVAERLTDGIESWNELVERADHRMYAAKQSGKDRVIGC 405 Query: 259 SDI 261 D+ Sbjct: 406 GDL 408 >gi|109899742|ref|YP_662997.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas atlantica T6c] gi|109702023|gb|ABG41943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas atlantica T6c] Length = 684 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 21/179 (11%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQIN 143 Y S ++L F+S +R+SQ+ + EK +++F D+D FK++N Sbjct: 260 YDSLTLLPNRFLSLDRLSQM---------------LKEAQRNEEKAALLFLDLDDFKKVN 304 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRK 201 D+ GH VGDK++ +++L + VGRLGG+EF AL + N LR Sbjct: 305 DSLGHEVGDKLLVEAANKLTLALRKADTVGRLGGDEFIVLLRALADDNDAKEVAENLLRV 364 Query: 202 IIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + I+ G + +T+S GI S ++ AD A+Y +K SGRN F+ Sbjct: 365 FRDPFLID---GKELILTLSIGIVTYPENGSSASDLLRHADAAMYQSKLSGRNTYSFFT 420 >gi|320531046|ref|ZP_08032076.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399] gi|320136712|gb|EFW28664.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399] Length = 573 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 18/160 (11%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 YNR+ D S L N F K S FD+D+FK +ND GH GD V+ Sbjct: 422 YNRLQLQKSFDAFSALANERGF---------KFSFAIFDVDHFKSVNDTKGHLEGDNVLK 472 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ + R GG+EF AL + A +LR+ +E + Sbjct: 473 KIARTVHDEIDRRHVFIRYGGDEFILLALHYDLETMAAFCEELRRKLEAALAG------- 525 Query: 217 HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G++ K+ + +I RAD+ALYV+K+ GRN V Sbjct: 526 -VTMSFGVSTWHGDKDRLRALIDRADRALYVSKEKGRNAV 564 >gi|319935376|ref|ZP_08009813.1| hypothetical protein HMPREF9488_00644 [Coprobacillus sp. 29_1] gi|319809592|gb|EFW06005.1| hypothetical protein HMPREF9488_00644 [Coprobacillus sp. 29_1] Length = 309 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 7/171 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYN--EKLSIVFFDIDYFKQINDNFGHP 149 E F+ ++S S D L+GL N F ++ +++SI++ D+D+FK +ND +GH Sbjct: 140 EAFLLEQQLSNNSHTDFLTGLYNRRYFYEYYSEHHSFDQISILYVDLDHFKIVNDTYGHQ 199 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQI 208 +GD+V+ + L +F + RLGG+EF G S+QE N+L II + Sbjct: 200 IGDEVLKISAQILHKLFPNDT-ITRLGGDEFLVLKYGIISKQELIEQGNNL--IIALQEQ 256 Query: 209 NISSGPSIHITISAGIAERCHKEPI-STIIYRADQALYVAKKSGRNRVVCF 258 S +++ S GI+ + I +I +D ALY AK++GR++ F Sbjct: 257 FKKSRYYYNLSASVGISYTTDNQKIVDELIKESDTALYEAKQTGRSKCCIF 307 >gi|297585550|ref|YP_003701330.1| diguanylate cyclase [Bacillus selenitireducens MLS10] gi|297144007|gb|ADI00765.1| diguanylate cyclase [Bacillus selenitireducens MLS10] Length = 548 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 13/162 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+G+ N FI +E+ S++ D+D+FK++ND +GH GD V+ + L Sbjct: 380 DYLTGIANRRHFIDLYQKRHEQDHGSGSLLLLDLDHFKRVNDTYGHQTGDHVLRHFA-SL 438 Query: 163 VVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + F F GR+GGEEF ++ ++A + + LR +N + + I Sbjct: 439 LESFFRDGFCGRIGGEEFGVYLPLTCDAAVEKARMFQDYLR---DNPYVT-TDKERIFTP 494 Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSD 260 +S G+ E P +YR AD+A+Y+AK++GRN+VVC D Sbjct: 495 VSTGVTEISADAPDFETVYRQADEAMYLAKENGRNQVVCHRD 536 >gi|258620971|ref|ZP_05716005.1| GGDEF family protein [Vibrio mimicus VM573] gi|258586359|gb|EEW11074.1| GGDEF family protein [Vibrio mimicus VM573] Length = 505 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 20/241 (8%) Query: 37 IFIATVIFIANIFLFYIGLTPFYGLEYILVE----NLSLVIISITISLLLGYISGSI--- 89 +F ++V+++ N+++ + P +L + + S IS + + +I Sbjct: 265 LFFSSVMYVVNLWVVVTLIKPITAANQVLQQFKTSGGKMPDASTFISAEMKEFASTINHI 324 Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIND 144 + +L S + S D L+ + N L Y L + DIDYFK ND Sbjct: 325 VTQLDESQQVLRWQSEHDPLTRISNRRYLEKQLKGYLSDRPCRYLVLYLIDIDYFKPFND 384 Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202 NFGH GD+ + ++ L + F V R GGEEF SE +A A + K+ Sbjct: 385 NFGHLAGDEALCSVAQALQAIEFDGEKIVTRFGGEEFCVVLASDSELDAEQFAQQIHTKV 444 Query: 203 IENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 E + N ++T+S G I+ R + ++ ++AD ALY AK+SGRNR V Sbjct: 445 AELAIANPQDSDFQYLTVSIGGVYAISPRM--DAYLSLFHQADMALYEAKESGRNRYVVR 502 Query: 259 S 259 S Sbjct: 503 S 503 >gi|268680792|ref|YP_003305223.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268618823|gb|ACZ13188.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 304 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 13/177 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 E I+ N I LS++D L+ L N+ AF L + L++ DIDYFK IND Sbjct: 126 ERKIAENAILNLSKVDGLTKLPNYRAFSQFLSHEWRRAMRTHTPLTMAMIDIDYFKYIND 185 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI--LANDLRK 201 +GH GD+ + ++ L P R GGEEF LG + E A+ + L K Sbjct: 186 TYGHLKGDEYLRKIAHMLQRTIHRPSDLCARYGGEEF-VIILGDTPLEKALGMMQTCLEK 244 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 I N S +T+S G+ K ++ I +AD+ LY+AKK GRN++ Sbjct: 245 TIALRLPNPKSPIMPILTLSIGVVSVYPKPDMNEKAFIQKADELLYLAKKQGRNQLA 301 >gi|220923410|ref|YP_002498712.1| PAS/PAC and MHYT sensor-containing diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans ORS 2060] gi|219948017|gb|ACL58409.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Methylobacterium nodulans ORS 2060] Length = 794 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 9/171 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 L+ + RI L+ D L+GL N ++F L + KL+++ D+D FK++ Sbjct: 350 LRARRQAEGRIQFLAHHDALTGLANRTSFTQRLDLELKLAEATGRKLAVLCLDLDRFKEV 409 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH GD ++ ++ + + G + RLGG+EFA A A LA + + Sbjct: 410 NDLFGHAAGDAMLVNVARVVTGILGETQMMARLGGDEFAVLAACDHAITAGHLAERILEA 469 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + + ++GP + +I + E ++ AD ALY AK GR Sbjct: 470 LRSENAD-AAGPLVATSIGIALYPDDASE-RDVLLSHADTALYRAKSEGRG 518 >gi|114705189|ref|ZP_01438097.1| GGDEF family protein [Fulvimarina pelagi HTCC2506] gi|114539974|gb|EAU43094.1| GGDEF family protein [Fulvimarina pelagi HTCC2506] Length = 684 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 76/155 (49%), Gaps = 8/155 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F L K S++ D+D FK +ND GH GD V+ ++ Sbjct: 258 DELTGVPNRRKFSEILADRCAKTRDTGAEFSLIMIDLDRFKPVNDTLGHTTGDAVLKRVA 317 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++L V F+ RLGG+EFA ALGS+ + +L R I S+ I +G I + Sbjct: 318 NRLEHVIRASDFLARLGGDEFAIIALGSTGDRSNVLRLCDRIIDVLSRPFIINGHVIELG 377 Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 S G+A H + AD ALY AK +GR+ Sbjct: 378 ASLGVAIAPAHGTTADDLTQSADIALYAAKDAGRS 412 >gi|71905872|ref|YP_283459.1| GGDEF [Dechloromonas aromatica RCB] gi|71845493|gb|AAZ44989.1| GGDEF protein [Dechloromonas aromatica RCB] Length = 355 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 31/194 (15%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISS-------LG--------------SYNEKLS 130 E+F +Y + +S+ D L+GL N A SS LG S E Sbjct: 152 EVFSNYYALLDISQRDRLTGLFNRQALESSFDRIWRALGRPDHFAERENGRRSSPGENYW 211 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + DID+FK IND FGH VGD+++ S ++ F + R GGEEF A Sbjct: 212 LAVIDIDHFKSINDRFGHMVGDEILLLASRLMITTFRGSDLLYRYGGEEFVAII------ 265 Query: 191 EAAILANDLRKIIENSQINISSG--PSI-HITISAGIAERCHKEPISTIIYRADQALYVA 247 AA A R + E ++ I + P I +T+S G ++ ++ RAD++LY A Sbjct: 266 -AAENAAIARNVFERVRLAIEAHVFPRIDKLTVSIGYSQVSLDILPVEVLSRADRSLYQA 324 Query: 248 KKSGRNRVVCFSDI 261 K+ GRNRV + ++ Sbjct: 325 KQDGRNRVYAYQEL 338 >gi|288917003|ref|ZP_06411374.1| serine/threonine protein kinase [Frankia sp. EUN1f] gi|288351543|gb|EFC85749.1| serine/threonine protein kinase [Frankia sp. EUN1f] Length = 1661 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 13/172 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 R+SQLS D L+GL N LGS ++ L++ DID+FK ND++GH G Sbjct: 1491 RLSQLSVTDPLTGLANRRRLEDVLGSEWDRSRQQHVPLALAMVDIDHFKSYNDHYGHAAG 1550 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ + ++ L G R GGEEFA + + A A L + ++I Sbjct: 1551 DRCLQRVAGCLATNVGDTELAARYGGEEFAIVMPDADQITAGERARCLCAAV--ARIAEP 1608 Query: 212 SGPSIH--ITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVVCFS 259 P+ +T+S G+A I + AD ALY AK++GR RV S Sbjct: 1609 HAPARQRIVTVSVGVASVVPDRESHAIRLVELADSALYQAKRAGRGRVCTAS 1660 >gi|256822275|ref|YP_003146238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM 16069] gi|256795814|gb|ACV26470.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Kangiella koreensis DSM 16069] Length = 861 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 23/183 (12%) Query: 98 NRISQLSRIDCLSGL---------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 +I +++ D L+GL +N S +S +N L +F D+D+FK IND+ GH Sbjct: 426 QQIQHMAQHDSLTGLPNRLLLNDRINQSLALSLRHHHNGAL--LFIDLDFFKNINDSLGH 483 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRK----- 201 GDK++ ++ +L + V RLGG+EF + L E EA + A + K Sbjct: 484 MTGDKLLIEVAKRLEDNVRSGDTVARLGGDEFIIQLSELSDVEAEAELDAITVAKKLIQT 543 Query: 202 IIENSQINISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCF-S 259 + + QIN G S+HIT S G+ + I+ RAD A+Y AK GRN F S Sbjct: 544 LTQEFQIN---GQSLHITASIGVLVYPRDADSHELIMQRADTAMYHAKAKGRNGYAVFKS 600 Query: 260 DIE 262 D+E Sbjct: 601 DME 603 >gi|225571248|ref|ZP_03780246.1| hypothetical protein CLOHYLEM_07337 [Clostridium hylemonae DSM 15053] gi|225160079|gb|EEG72698.1| hypothetical protein CLOHYLEM_07337 [Clostridium hylemonae DSM 15053] Length = 639 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 11/156 (7%) Query: 105 RIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 R+D L+ + N +A I + + K + D+D FKQIND +GH GDK +A + Sbjct: 480 RLDGLTEIYNKAAGEEIIRRKMAKSRKGLLYILDVDNFKQINDQYGHCQGDKALAHIGGL 539 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L F + V R+GG+EF A G+ + + AA A D+ K +E S IT+ Sbjct: 540 LKSKFRSDDIVCRIGGDEFVAYMDGTVNRKAAAKKAEDIFKALE----ECSQEMDFEITV 595 Query: 221 SAGIAERC--HKEPISTIIYRADQALYVAKKSGRNR 254 S GIA C H + AD+A+Y KK G+N+ Sbjct: 596 SIGIAA-CPEHGSTYEELFNAADKAMYEGKKHGKNQ 630 >gi|116327781|ref|YP_797501.1| two-component response regulator - (cyclic diguanylate (c-diGMP) effector molecule) [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120525|gb|ABJ78568.1| Two-component response regulator - (cyclic diguanylate (c-diGMP) effector molecule) [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 409 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 11/167 (6%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I ++S++D L+ L N F+ Y L+++ D+DY K+IND++GH GD Sbjct: 223 IEKISKVDELTKLYNRRYLIEQFELFLKRAQRYRFSLAMIILDMDYLKEINDSYGHLAGD 282 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN--I 210 + +SD + R+GG+EF + + L LR + +++ Sbjct: 283 LALRTISDVMKQRVRATDICSRIGGDEFCILLDAIKKDDFVQLCEKLRMEVAEKELSYRT 342 Query: 211 SSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRV 255 SG + I++S G E S I + D ALY +KK GRNRV Sbjct: 343 PSGDPVKISVSIGACILSPMEEFSFDDIYHSIDSALYESKKKGRNRV 389 >gi|328949045|ref|YP_004366382.1| diguanylate cyclase [Treponema succinifaciens DSM 2489] gi|328449369|gb|AEB15085.1| diguanylate cyclase [Treponema succinifaciens DSM 2489] Length = 656 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 13/171 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFIS--------SLGSYNEKLSIVFFDIDYFKQ 141 LK+L YN+I +S D L+GLLN FIS ++ S L ++F DID K+ Sbjct: 479 LKKLEKDYNKICAVSVTDELTGLLNRRGFISISSRILETAMNSGQSGL-VLFGDIDGLKK 537 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND GH GD+ I + L F + + RLGG+EFA A G +++ + L L+ Sbjct: 538 INDTHGHAAGDRAIKNEAALLKKTFRSSDAIARLGGDEFAILAAGLNQENFSKLKERLQ- 596 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKS 250 + + N +SG ++IS G A + I++++ AD LY K+ Sbjct: 597 -VYCDEYNKNSGEPFTLSISIGSAPFGGQSGYDINSLLEYADSVLYKEKQK 646 >gi|289551394|ref|YP_003472298.1| diguanylate-cyclase (GGDEF) domain-containing hypothetical protein [Staphylococcus lugdunensis HKU09-01] gi|315658900|ref|ZP_07911767.1| GGDEF domain protein [Staphylococcus lugdunensis M23590] gi|289180925|gb|ADC88170.1| diguanylate-cyclase (GGDEF) domain-containing hypothetical protein [Staphylococcus lugdunensis HKU09-01] gi|315496024|gb|EFU84352.1| GGDEF domain protein [Staphylococcus lugdunensis M23590] Length = 357 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 NR + D L+GL N F L ++E L+++ DID FK +ND++ H Sbjct: 183 NRYENEDKYDYLTGLGNVKEFDRHLNHISQQAEEHHESLALLLIDIDGFKDVNDSYSHKS 242 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + R GGEEF+ S ++ LA ++R +E S ++ Sbjct: 243 GDAVLKQMSQLLKNYVPKKFKIFRNGGEEFSVVIRDYSLDQSVKLAENIRLGVEKSSFHL 302 Query: 211 SSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I +++S G+ + HK + AD ++VAK GRN+V+ Sbjct: 303 PNKEVIKLSVSIGVGYLTKDDHKSQ-RKVFKDADDMVHVAKNEGRNQVM 350 >gi|217970398|ref|YP_002355632.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T] gi|217507725|gb|ACK54736.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T] Length = 639 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 22/173 (12%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL--GSYNEKL-----SIVFFDIDYFKQINDNFGHPVGD 152 I L+ +D L+ L N + L G N + +++F DID+FK++ND +GH GD Sbjct: 466 IRNLAFVDTLTQLPNRRFLLDRLRQGLANARRHGRHGALLFIDIDHFKRVNDTYGHEAGD 525 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEF-------AAAALGSSEQEAAILANDLRKIIEN 205 +++ ++ +L V V RLGG+EF A + E+ A I N L + E Sbjct: 526 QLLCEIAARLRQVVREGDTVARLGGDEFVVMLEDLGDATAEAGEKAALIAGNILAALNEP 585 Query: 206 SQINI---SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I S PSI I G +R + ++ RAD+A+Y AK GRNR+ Sbjct: 586 YAIGAVRHHSTPSIGIACFDGGEQRAEE-----LLRRADEAMYRAKAGGRNRL 633 >gi|221210772|ref|ZP_03583752.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Burkholderia multivorans CGD1] gi|221169728|gb|EEE02195.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Burkholderia multivorans CGD1] Length = 659 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 17/186 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDID 137 SG + E + R+++L+ D L+GL N A G ++ I+F D+D Sbjct: 210 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIRTVIAQQTGDTPGQVGILFLDLD 269 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193 FK++ND++GH GD+++ +S + + + RLGG+E F E A Sbjct: 270 NFKRVNDHYGHITGDRLLQDVSAIINGCLPSGATLARLGGDEFLVLFEQGTRALLEATAQ 329 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I+ LR I + + + SI I + H + + T+I AD A+YVAK++G++ Sbjct: 330 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRNADTAMYVAKEAGKH 384 Query: 254 RVVCFS 259 FS Sbjct: 385 TYRVFS 390 >gi|221135144|ref|ZP_03561447.1| diguanylate cyclase with PAS/PAC and GAF sensors [Glaciecola sp. HTCC2999] Length = 667 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 81/167 (48%), Gaps = 12/167 (7%) Query: 103 LSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+GL N I + L IV D+D+FK INDN+GH GD V+ Sbjct: 500 LSMRDALTGLYNRRFIEECIQREIDRASRNSSSLIIVMADLDHFKHINDNYGHDAGDAVL 559 Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213 +S QL V F V R GGEEF S++ A LR IE+ ++ Sbjct: 560 KTIS-QLFVGFRNGYDIVSRYGGEEFLFLLTDISQENAFQRLEKLRLQIEDLKVETGGHV 618 Query: 214 -PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S+ I+I A E +I RAD+A+Y+AK +GRN++ ++ Sbjct: 619 IDSLSISIGAATFPEMGTEK-EILINRADEAMYLAKNNGRNQIAFYT 664 >gi|90579529|ref|ZP_01235338.1| putative signal transduction protein [Vibrio angustum S14] gi|90439103|gb|EAS64285.1| putative signal transduction protein [Vibrio angustum S14] Length = 461 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 7/163 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 + + S D L+ L N LG + N+ SI FDID FKQ+ND +GH VGD V Sbjct: 292 LQKTSYTDELTHLPNRRLLNEKLGAISTLTNNQIYSIAIFDIDNFKQVNDTYGHDVGDDV 351 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ + + + R GGEEF + + + + +I S+ Sbjct: 352 LVAFANICLSSIRSTDIIARWGGEEFVLLMENTDSHHGQEICTRILHTLSQHRI-TSADT 410 Query: 215 SIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 +T S G+ E + I++++ D+ALYV+KK+G+N+V Sbjct: 411 HFSVTSSVGLCEFTTPDFTITSVMKCIDEALYVSKKTGKNKVT 453 >gi|254505926|ref|ZP_05118071.1| diguanylate cyclase with PAS/PAC sensor [Vibrio parahaemolyticus 16] gi|219551149|gb|EED28129.1| diguanylate cyclase with PAS/PAC sensor [Vibrio parahaemolyticus 16] Length = 317 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 18/168 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKL-----SIVFFDIDYFKQINDNFGHPVGDKV 154 +++L+ D L+GL N A S Y ++ +++F D+D FK +NDN GH GD V Sbjct: 153 LARLASEDPLTGLFNRQALTSHFADYAKRYPHRPSALIFIDLDDFKTVNDNLGHKAGDLV 212 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ--INISS 212 + +S L F+ RLGG+EF S Q +DL + SQ I + + Sbjct: 213 LMQISAWLKDFAPKDAFIARLGGDEFVLLCHEDSPQSIDRFTDDL---LSQSQQPIQLDN 269 Query: 213 GPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVV 256 G S + S GI CH P S + +DQA+Y K++G+N V Sbjct: 270 G-SAKVGFSIGI---CHFTPQSYDFEALYVASDQAMYSIKQNGKNGVA 313 >gi|152995922|ref|YP_001340757.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150836846|gb|ABR70822.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 300 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 17/169 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151 ++ LS D L+GL N L + E SI+ FD+D K+IND GH G Sbjct: 134 KLRTLSDTDQLTGLFNRRKLERDLALHYEAFERYAVPASILMFDLDNLKKINDTLGHFSG 193 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D++I + D R GG+EF + + A AN LRK + ++N Sbjct: 194 DEIIMTIGDICRSELRKTDIACRFGGDEFVIGLPNMNLENAVTFANRLRKHFK-LELNRF 252 Query: 212 SGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S I I+IS G+ A+R +E + RAD ALY AK+SG+++V Sbjct: 253 STEDIPISISIGVVTMEPADRSFEETLR----RADDALYEAKRSGKDQV 297 >gi|21232072|ref|NP_637989.1| hypothetical protein XCC2641 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767802|ref|YP_242564.1| hypothetical protein XC_1476 [Xanthomonas campestris pv. campestris str. 8004] gi|21113815|gb|AAM41913.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573134|gb|AAY48544.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 788 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 98 NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + ++ +R D L+GL+N I S ++ F D+D+FK +ND FGH V Sbjct: 351 DEVAYHARHDALTGLINRREIERRLQRLIDPPQSPQLCHALCFVDLDHFKLVNDTFGHAV 410 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GDK + +D + + ++GRLGG+EFA + A L + ++ + Sbjct: 411 GDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLANTDLAHAHTLLERMHGVL-GQPWSH 469 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 G + + S G+ E R + ++ ++ AD A + AK+ GRNR+ F + + Sbjct: 470 QGGRPLTPSCSFGVVEIRQGADDVNLLMTAADLACHAAKEEGRNRIRSFGETD 522 >gi|121998228|ref|YP_001003015.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Halorhodospira halophila SL1] gi|121589633|gb|ABM62213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Halorhodospira halophila SL1] Length = 698 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 18/183 (9%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFK 140 S L EL S R+ + D L+GL N F + E+L+++F D+D+FK Sbjct: 252 SDLTELKRSQERLQFQAYHDALTGLANRLLFKDRMARALERSRQSEEQLAVLFIDLDHFK 311 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-----L 195 +ND+ GH GD+++ ++ +L G + RLGG+EF+ + A+ + Sbjct: 312 DVNDSLGHTAGDRILRQVAHRLQARLGADDTLARLGGDEFSICLAEIRDHRDALACAETV 371 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +L + + SQ SI I++ + E + +I AD AL+ AK GRN Sbjct: 372 HQELERPFQYSQRWFQCRCSIGISMYPD-----NGETVEELIRNADSALHNAKAEGRN-T 425 Query: 256 VCF 258 CF Sbjct: 426 TCF 428 >gi|297568050|ref|YP_003689394.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] gi|296923965|gb|ADH84775.1| diguanylate cyclase [Desulfurivibrio alkaliphilus AHT2] Length = 356 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 27/215 (12%) Query: 58 FYGLEY----------ILVENLSLVIISITISLLLGYISGSILKELF---ISYNRISQLS 104 FYG + +L+ + I I LL G + IL E + Y + + Sbjct: 130 FYGCRWTIELASDSGVLLLMRRAATIDQEGIDLLAGIVG--ILAEPLQRGLDYGDLFDQA 187 Query: 105 RIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 R D L+GL N F +G Y + L+++ D+D FK +ND+ GH GD+ + Sbjct: 188 RRDFLTGLANRRVFDERIGPLLESARRYQQPLTLLSMDLDRFKLLNDSCGHAEGDRALCR 247 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +++ L + T + R+GG+EF GS + A I+A +R + +S G Sbjct: 248 VAETLAGMVRTCDLLVRMGGDEFLLVLPGSDAKAAKIMAQRIRSAVS----ALSFGEDRR 303 Query: 218 -ITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + IS GI + + + RAD+ALY AK G Sbjct: 304 KMGISVGIVQWAAGLSLDDWLQRADEALYRAKGLG 338 >gi|229193601|ref|ZP_04320545.1| Sensory box protein [Bacillus cereus ATCC 10876] gi|228589906|gb|EEK47781.1| Sensory box protein [Bacillus cereus ATCC 10876] Length = 835 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 396 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 455 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 456 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 515 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 516 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 569 >gi|330964835|gb|EGH65095.1| GGDEF domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 521 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 22/218 (10%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLGYISGSIL----KELFISYNRISQLSRIDCLSG 111 P++ Y + + ++I+++ + +L Y L +EL + + +++ D L+ Sbjct: 288 APWWAYTYRSMALIGMIILALALLSMLFYRQIQHLIKAEEELTSARAALEIIAQTDGLTH 347 Query: 112 LLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 L N F +L N ++I+ DID+FKQ ND +GH GD + Q+ Sbjct: 348 LANRRCFDVALQQEWGRATRNNSTIAIILLDIDWFKQYNDRYGHLRGDDCL----KQVAG 403 Query: 165 VFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + G+ + R GGEEF ++ A +A +R I N+ I S+ P +T Sbjct: 404 LIGSSVSRASDLAARFGGEEFVILLAETNLAGAMSVAEKIRLSISNAFIEHSASPLGSVT 463 Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IS+G+ +E + ++ AD+ LY AK +GRNRV Sbjct: 464 ISSGVVVINAREEEGYTVVLEEADRLLYRAKANGRNRV 501 >gi|269968327|ref|ZP_06182348.1| putative GGDEF family protein [Vibrio alginolyticus 40B] gi|269827063|gb|EEZ81376.1| putative GGDEF family protein [Vibrio alginolyticus 40B] Length = 652 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 11/159 (6%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAF 157 ++ID L+ LN +A I ++ S K + D+D FK IND +GHP GD V+ Sbjct: 482 AKIDSLTCALNRAAIIETIKSQTSKAEGDFRYVLALIDLDDFKAINDQYGHPTGDLVLQQ 541 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + L ++GRLGGEEF E + L K I S+ ++ S + Sbjct: 542 VCKALKTKLNKGEYLGRLGGEEFILLLKNVDEIDVPFRIQSLHKTI--SEKSVHSLNNHQ 599 Query: 218 ITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRN 253 + ISA +A P++ +Y DQALY AKK G+N Sbjct: 600 LNISASLAYLSTSMPLTNFDELYSILDQALYNAKKQGKN 638 >gi|119483270|ref|ZP_01618684.1| hypothetical protein L8106_04436 [Lyngbya sp. PCC 8106] gi|119458037|gb|EAW39159.1| hypothetical protein L8106_04436 [Lyngbya sp. PCC 8106] Length = 1006 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 74/160 (46%), Gaps = 12/160 (7%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL + + ++ DID+FK+ ND FGH GD V+ + Sbjct: 844 DPLTGLFNRRYLEESLEREINRACRNDHNVGVIMIDIDHFKRFNDTFGHDGGDAVLKEVG 903 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEE +S + A +RK+I+ QINI T Sbjct: 904 KLLKSSLRASDIACRYGGEEMTLILPEASIENTYKRAEQVRKLIK--QINIEHKRQSLGT 961 Query: 220 ISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 I+A + C E T ++ RAD ALY AKK GR+RVV Sbjct: 962 ITASLGVACFPEHGMTGDAVVQRADTALYQAKKEGRDRVV 1001 >gi|114778385|ref|ZP_01453232.1| hypothetical protein SPV1_08206 [Mariprofundus ferrooxydans PV-1] gi|114551348|gb|EAU53905.1| hypothetical protein SPV1_08206 [Mariprofundus ferrooxydans PV-1] Length = 437 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 11/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL---GSY----NEKLSIVFFDIDYFKQINDNFGHPV 150 +IS ++ D L+GL N + F L G++ ++ ++ D+D FK IND GH Sbjct: 265 EKISNMAYHDHLTGLANRALFYDRLQQAGAHLQRNRNRMGMLMLDLDRFKLINDELGHEW 324 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209 GD+V+ +S +L+ + V RLGG+EF+ L SE+ +A + +I Q Sbjct: 325 GDRVLVEVSSRLMRCVRSTDTVARLGGDEFSIILLDVPSEEFVCKMAEKVITVI--GQSL 382 Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 + G + +S GI + + T++ +AD A+Y AK+SGRN Sbjct: 383 VLKGGHYEVGVSIGICLASSDDQDMETLVKKADAAMYQAKESGRN 427 >gi|89075613|ref|ZP_01162014.1| hypothetical protein SKA34_03750 [Photobacterium sp. SKA34] gi|89048620|gb|EAR54193.1| hypothetical protein SKA34_03750 [Photobacterium sp. SKA34] Length = 350 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 97 YNRISQLSRI---DCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNF 146 Y+ I Q+ R D L+GLL+ FI S Y +S++ DID + IND + Sbjct: 179 YDAIMQVKRTTTHDYLTGLLSREGFIPLYLYESSRCQRYRRDISMLLIDIDNLRDINDRY 238 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 G VGDK I L+ + + + RL +EF + Q+A +A LR + Sbjct: 239 GLDVGDKAIMMLAKCMKETCDADVQIARLSCQEFCILIPNADLQKAECIAIALRNEVAKW 298 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + + SG I++T+S GI +++ I +A+ AL AK+ G N++ Sbjct: 299 ALELESGHKINMTVSVGITTVEYQDFRYDYI-KAESALMRAKRWGYNQI 346 >gi|152968266|ref|YP_001364050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Kineococcus radiotolerans SRS30216] gi|151362783|gb|ABS05786.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Kineococcus radiotolerans SRS30216] Length = 743 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 15/163 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI +L+ D L+GL+N F + + L+++F D+D FK +ND GH G Sbjct: 580 RIEELAYTDSLTGLVNRRRFEERVEVELWEARGGDSALAVLFMDLDGFKAVNDELGHAAG 639 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG----SSEQEAAILANDLRKIIENSQ 207 D+++ ++ +L RLGG+EF + G S+ +EA +A LR I Sbjct: 640 DQLLVQVAARLKARLRRSDLAARLGGDEFLVSLQGLDRASARREADRVAEQLRAAIAEP- 698 Query: 208 INISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAK 248 +I+ P + +T+S G+A E ++++RAD +Y AK Sbjct: 699 YDIAGQP-VRVTVSIGVATFPEDDAEDFRSLLHRADVRMYAAK 740 >gi|330975494|gb|EGH75560.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 397 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 34/182 (18%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 ++ + +R D L+ L N + S E ++I+ DID+FK NDN+GHP G Sbjct: 229 QLMEFARTDGLTRLFNRRYQDEVMTSVWEHARNTPANVAIILLDIDHFKSYNDNYGHPQG 288 Query: 152 DKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 D + L Q G F R GGEE +G+ Q R++ E Q Sbjct: 289 DTCLRLLCQKVQQSAHEHGAVAF--RFGGEEVLVLMIGNPVQA--------REVAEALQT 338 Query: 209 NISS--------GPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257 +++ G + +T+S G+A C P+++ +I AD ALY AK++GRN VC Sbjct: 339 SVAELKLPHPVLGENALVTVSLGVA--CATAPMTSAENLIGAADNALYAAKRAGRN-CVC 395 Query: 258 FS 259 F+ Sbjct: 396 FA 397 >gi|209544833|ref|YP_002277062.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5] gi|209532510|gb|ACI52447.1| diguanylate cyclase [Gluconacetobacter diazotrophicus PAl 5] Length = 632 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 7/172 (4%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF------ISSLGSYNEKLSIVFFDIDYFKQIN 143 L+E + + + D L+ LLN A + +E+ ++ DID+FK IN Sbjct: 380 LRERAAQTQALKRQAETDELTQLLNRRALQILAKPRLEISEADERAFLILLDIDHFKSIN 439 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GD+V+ ++ L V R GGEEFA ++ A +A+ LR+ + Sbjct: 440 DRHGHTEGDRVLVAVAAALREQVRPDDLVARFGGEEFAILIRAHTQMTALSMAHRLRRRL 499 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ++ + I +T S G+A ++ +AD ALY AK++GRN V Sbjct: 500 GSLKVISAQNVRIPVTASFGVAA-GDNLTWRQLVAKADVALYAAKRAGRNTV 550 >gi|149180252|ref|ZP_01858757.1| sensory box protein/GGDEF domain protein [Bacillus sp. SG-1] gi|148852444|gb|EDL66589.1| sensory box protein/GGDEF domain protein [Bacillus sp. SG-1] Length = 706 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY------NEKL-SIVFFDIDYFKQINDNFGHPV 150 ++ +L+ D L+ L N F LG EKL S++F D+D FK IND+ GH + Sbjct: 276 EKMRELAFYDPLTRLPNRKLFEDRLGQIIKLAKIEEKLFSVIFLDLDRFKFINDSMGHHI 335 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-IIENSQIN 209 GD+ + ++D+L + + RL G+EF +E++ +A + + + E Q+ Sbjct: 336 GDEFLKLVADRLKQSIRSTDTLSRLAGDEFTILLPDITEEDVISIAERINQSLAEPFQV- 394 Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 SG + ++ S GIA K +S II+RAD A+Y KK R++ +SD Sbjct: 395 --SGHWLSVSASIGIAFSTGKNVGVSEIIHRADTAMYQTKKFRRSQYTIYSD 444 >gi|152996310|ref|YP_001341145.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150837234|gb|ABR71210.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 358 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 14/162 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFIS--SLGSYNEKL-SIVFFDIDYFKQINDNFGHPVGDKV 154 ++ LS D L+ L N SL +++ S+ D+D+FK+ ND +GH GD + Sbjct: 201 KKLRNLSEKDSLTDLYNRRILDKQYSLWKTQDRIFSLALLDLDHFKKQNDQWGHNYGDDI 260 Query: 155 IAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + S L V F RLGGEEF S+E D +II + S Sbjct: 261 LRTFSYLLKDVAINNKGFAIRLGGEEFVLLLPLSAE--------DSYQIIRQAAETFSKT 312 Query: 214 PSIH--ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 P IH +T SAG+A+ + ++ RAD +Y AK GRN Sbjct: 313 PLIHGPVTFSAGVAQSTPNDNQGELLKRADNLMYQAKNKGRN 354 >gi|148546689|ref|YP_001266791.1| PAS/PAC sensor-containing diguanylate cyclase [Pseudomonas putida F1] gi|148510747|gb|ABQ77607.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida F1] Length = 332 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 15/194 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-- 124 +N SL + L +++ + ++L NR +L+ D L+ + N S+L Sbjct: 143 KNQSLEFQVAERTRELSWVNQQLQRQL--DENR--ELAERDALTRVANRYRLESALQREC 198 Query: 125 -----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 + + LS++ D+D FK IND +GH GD + +++ L + R GG+E Sbjct: 199 QRAQRFRQPLSLIAMDMDDFKPINDRYGHARGDAALVRVAESLRTCLRELDLLARWGGDE 258 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F ++ EA +A LR+++E + +T+S G+ + E ++ R Sbjct: 259 FVIVLPQTALGEALDVAARLRQVLE----QVEPVGDCRLTMSYGVVQWLEGEDQHALLAR 314 Query: 240 ADQALYVAKKSGRN 253 AD+ALY AK +G+N Sbjct: 315 ADKALYRAKGTGKN 328 >gi|332561027|ref|ZP_08415345.1| Diguanylate cyclase precursor [Rhodobacter sphaeroides WS8N] gi|332274825|gb|EGJ20141.1| Diguanylate cyclase precursor [Rhodobacter sphaeroides WS8N] Length = 439 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 12/190 (6%) Query: 74 ISITISLLLGYISGS---ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----- 125 +++T+ L ++ + + + + R+ + R D L+ LLN F +L Sbjct: 241 VAVTVPPELAAVANAFNDMTRTIVEQEARLREFGRRDALTSLLNRREFDHALEQRAAPWT 300 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF--GTPMFVGRLGGEEFAAA 183 + +++ DID FK+IND GH VGD V+ ++ +L G P+F R GGEEFA Sbjct: 301 GKPYALLLIDIDRFKRINDTHGHAVGDAVLRAVALRLAASAREGLPLF--RYGGEEFALL 358 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 + EA A LR+ + + + I +TIS GIA + + + AD+A Sbjct: 359 LDRAGAAEALTEAERLRRAVAEEPVELEDSTRIAVTISVGIALGARGQAGAELFAAADRA 418 Query: 244 LYVAKKSGRN 253 LY AK +GRN Sbjct: 419 LYAAKDAGRN 428 >gi|327439215|dbj|BAK15580.1| FOG: GGDEF domain [Solibacillus silvestris StLB046] Length = 620 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 18/180 (10%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLLNHS---AFISSLGSYNEKLSIVFFDIDYFKQ 141 IS S+L+E ++ ++ D L+ L S +F+ + ++ + DID FK+ Sbjct: 447 ISNSVLRE------QLQEMVDRDHLTKLYARSYSDSFVENSIQKDDSGMFLLIDIDNFKK 500 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND +GH VGD+VI ++ +L G R GGEE A S+ EA +++ + + Sbjct: 501 VNDTYGHQVGDEVIVQIARRLQNEIGKKGICSRWGGEELAIYIPNISDSEAIGISDSIVQ 560 Query: 202 IIENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ + S PS +T+SAG+ + + + +AD ALY AK++G+NR+ + Sbjct: 561 MVPS-----VSNPS--VTVSAGMITWHKSSRPNFKNMFAQADMALYHAKRNGKNRLCVYE 613 >gi|311279749|ref|YP_003941980.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae SCF1] gi|308748944|gb|ADO48696.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter cloacae SCF1] Length = 410 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 77/159 (48%), Gaps = 13/159 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVF--------FDIDYFKQINDNFGHPVGDKVIAFL 158 D L+GLLN F + L + L I F D D FK IND++GH GD+V+ L Sbjct: 256 DSLTGLLNRRQFYA-LTESHSALPIPFTSDYCLLLVDTDNFKSINDSYGHLKGDEVLIHL 314 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 S L ++ R GGEEFA +S + A +A +R + S +N S P Sbjct: 315 SRILESCSRKGDYIFRWGGEEFAVLLPRTSLETALAVAESMRDAVTKS-VN-SELPE--F 370 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 T+S G+A E + R D ALY AK GRN+V+ Sbjct: 371 TVSIGVARHQPGETRDALFRRVDAALYQAKNGGRNKVLA 409 >gi|256395339|ref|YP_003116903.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928] gi|256361565|gb|ACU75062.1| diguanylate cyclase [Catenulispora acidiphila DSM 44928] Length = 467 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 14/165 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 +++ + D L+GL N AF +L + LS++ D+D+FK+IND +GH GD Sbjct: 295 LAEQASTDPLTGLSNRRAFDEALEREAARQRRTRAPLSLLAVDVDHFKKINDTWGHAAGD 354 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINIS 211 +A L D L + V R+GGEEF + Q A ++ S+ Sbjct: 355 DTLAALGDLLPRLVRADDTVSRVGGEEFGVLLPDCPAPQARARADALRAEVWAASR---- 410 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 G S +T+S G+A + + ++ AD ALY AK+SGR+RV Sbjct: 411 -GWSHPVTVSVGVATVPDSADALQDLVVAADMALYAAKESGRDRV 454 >gi|229072815|ref|ZP_04206014.1| Sensory box protein [Bacillus cereus F65185] gi|228710306|gb|EEL62281.1| Sensory box protein [Bacillus cereus F65185] Length = 835 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 396 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 455 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 456 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 515 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 516 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 569 >gi|256380795|ref|YP_003104455.1| diguanylate cyclase [Actinosynnema mirum DSM 43827] gi|255925098|gb|ACU40609.1| diguanylate cyclase [Actinosynnema mirum DSM 43827] Length = 285 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 9/148 (6%) Query: 117 AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 A ++ G+ L+I D+D+FKQ+ND FGH +GD+V+ + + L F R G Sbjct: 112 ALVAERGATTGGLAIALIDLDWFKQVNDTFGHLLGDRVLQRVVELLQAELPEHGFCARYG 171 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI------AERCHK 230 GEEF L + +AI + ++ S P + +T+S G+ AE + Sbjct: 172 GEEF-VIVLPDVDVTSAIQITEAARMRVERHAWASLAPGLRVTVSIGLAYEPPAAETPSR 230 Query: 231 EPIST--IIYRADQALYVAKKSGRNRVV 256 P++ + RAD LY AK+SGRN V Sbjct: 231 PPVAPEQQLLRADSLLYTAKQSGRNAVA 258 >gi|188580175|ref|YP_001923620.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium populi BJ001] gi|179343673|gb|ACB79085.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium populi BJ001] Length = 457 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 11/164 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N LG + L+ + DID FK IND +GH GD+V Sbjct: 290 ELAITDDLTGLHNRRYLDRHLGPVFGEAALQQKGLACLLLDIDRFKSINDTYGHEAGDEV 349 Query: 155 IAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + +++ + + PM + R GGEE G+ +A +A +R+ IE + I G Sbjct: 350 LRAFAER-IRQYVRPMDILARYGGEEIVMVVPGAELPDARAIAERIRERIEATPFAIDGG 408 Query: 214 PS--IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R + ++ RAD ALY AK SGRNRV Sbjct: 409 TRDIGVTVSVGVSVRRTTDTGPADLLKRADTALYRAKSSGRNRV 452 >gi|37676116|ref|NP_936512.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|37200657|dbj|BAC96482.1| GGDEF family protein [Vibrio vulnificus YJ016] Length = 459 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 16/192 (8%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAFISSLGSY-------- 125 I L+GY + +L +F++ R+ ++ D L+GL N F+ SL + Sbjct: 264 IVRLIGYPTALLLCLVFLAIYRLYTMAHSRSLHDELTGLPNRRYFMYSLEHHFEHAKKQG 323 Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF-AAA 183 ++ +++ D+D FKQIND GH GDKV+ +++L + V R+GG+EF + Sbjct: 324 RDDTFAVINLDLDRFKQINDTHGHAAGDKVLIACAERLKSTLRSTDLVARIGGDEFLVLS 383 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQ 242 A + E++ IL N L+ + + I + G I++ IS G H+ S ++ +ADQ Sbjct: 384 ARMTHEKDMEILLNKLKAALCSMPI-VYEGELIYVHISIGYCLFHHEMKDSEEMLKQADQ 442 Query: 243 ALYVAKKSGRNR 254 +Y KK+ + R Sbjct: 443 RMYNEKKANKMR 454 >gi|303238268|ref|ZP_07324804.1| diguanylate cyclase and metal dependent phosphohydrolase [Acetivibrio cellulolyticus CD2] gi|302594314|gb|EFL64026.1| diguanylate cyclase and metal dependent phosphohydrolase [Acetivibrio cellulolyticus CD2] Length = 516 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 18/242 (7%) Query: 34 FFSIFIATVIFIANIFLFYIGLT--PFYGLEYILVENLSLVIISITISLLLGYISGSILK 91 FF +FI I + I L P G+ + + +++I S+++ +S K Sbjct: 76 FFGLFIGLFINLFEIVLLSYAYMAHPMIGI----LAGFTSKVLTILSSIVMAILSNKQEK 131 Query: 92 ---ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQ 141 EL +++ LS D L+G NH F S+L + EKL +++ DID FK Sbjct: 132 QKEELQEQKSKLETLSVTDDLTGAYNHRFFNSTLDNEIEKLKLTRDCIALIMIDIDNFKM 191 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND GH GD ++ + L G V R GG+EFA S+ Q A+ +A+ +R Sbjct: 192 CNDISGHDYGDDILKGTASILKEAAGDGNTVCRYGGDEFAIILPSSNLQSASQIAHRIRN 251 Query: 202 IIENSQINISSGPSI-HITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + E + N S +IT+S G++ + +I +AD ALY +K G++ + + Sbjct: 252 LFEKQKTNYFEENSYSNITLSMGLSVYPDMADNKDELINQADMALYHSKNLGKDNIHFYQ 311 Query: 260 DI 261 DI Sbjct: 312 DI 313 >gi|289626717|ref|ZP_06459671.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648005|ref|ZP_06479348.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867293|gb|EGH02002.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 763 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 40/225 (17%) Query: 67 ENLSLVIISITISLLLGYISGS------------------ILKELFISYNRISQLSRIDC 108 + L L I +IT+ ++ G IS + +L +L + + Q++ D Sbjct: 235 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDP 294 Query: 109 LSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L+N F L + N L+++F DID+FK+IND+ GH GD+++ ++++ Sbjct: 295 LTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 354 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220 + V R GG+EF +EA LA ++++ + I+ +G + +T Sbjct: 355 IRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAY---RVMQKMKETIALAGRRMVMTT 411 Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S GIA C + ++ AD ALY +K +GRNRV FS Sbjct: 412 SIGIAVFPRDGSTCDE-----LLKHADLALYQSKDNGRNRVNFFS 451 >gi|284050759|ref|ZP_06380969.1| response regulator receiver modulated diguanylate cyclase [Arthrospira platensis str. Paraca] Length = 392 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 13/166 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN--------EKLSIVFFDIDYFKQINDNFGHPVG 151 + +L+ D L+ + N F L +YN E ++++ D+DYFK ND FGH G Sbjct: 195 LQRLALYDDLTQVANRRRFNEYL-AYNWHRCSREQEPIALILCDVDYFKPYNDTFGHQAG 253 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209 D + ++ + + V R GGEEFA + A +A +RK +EN ++ + Sbjct: 254 DDCLHKIARAISGAIQRSVDLVARYGGEEFAIILPNTPINGAVKVAERIRKQVENLRVPH 313 Query: 210 ISSGPSIHITISAGIAER-CHKE-PISTIIYRADQALYVAKKSGRN 253 S S ++T+S G+A + H E + ++I +AD+ALY AK GRN Sbjct: 314 PGSQSSDYVTVSLGVACKIPHSELSVDSLIAQADEALYQAKNQGRN 359 >gi|254458134|ref|ZP_05071560.1| diguanylate cyclase [Campylobacterales bacterium GD 1] gi|207084970|gb|EDZ62256.1| diguanylate cyclase [Campylobacterales bacterium GD 1] Length = 427 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 8/135 (5%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 + +++ D+D+FK++ND++GH VGD V+ S L + ++ R GGEEF + Sbjct: 293 EFALMMCDLDHFKRVNDSYGHAVGDVVLKHFSSILEEILRKSDYIFRFGGEEFMVLLPMT 352 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGI-------AERCHKEPISTIIYRA 240 ++EA ILA + I S++ I +I T+S G + +E I I + Sbjct: 353 DKKEALILAQKVCDAIVASEV-IVEDITIKYTVSIGTISIIIDNSVVIGQEAIDKYITQV 411 Query: 241 DQALYVAKKSGRNRV 255 D+ LY+AK+ GRNRV Sbjct: 412 DERLYLAKERGRNRV 426 >gi|145297211|ref|YP_001140052.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142849983|gb|ABO88304.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 386 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 23/187 (12%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDY 138 + ++ EL + + SR+D L+G+ N + L + LS+V D+DY Sbjct: 197 NADLVAELKLVSEHLKLTSRLDGLTGIANRAHLDYCLERAWRRCHRARAPLSLVLVDVDY 256 Query: 139 FKQINDNFGHPVGD----KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 FKQ ND +GH GD +V A L++ V R GGEEFA +S Q A Sbjct: 257 FKQFNDLYGHQQGDECLQRVAALLAE---VQRREDDLAARYGGEEFALLLPCTSMQGALQ 313 Query: 195 LANDLRKIIEN----SQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAK 248 +A ++R +++ Q ++ SG ++ S G+A + I+ +I +AD ALY AK Sbjct: 314 IAENVRMALKDLGIPHQKSLVSG---RVSCSFGVATLVPDQSGSIAELIQKADAALYQAK 370 Query: 249 KSGRNRV 255 +GR+R+ Sbjct: 371 HNGRDRI 377 >gi|121607371|ref|YP_995178.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Verminephrobacter eiseniae EF01-2] gi|121552011|gb|ABM56160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Verminephrobacter eiseniae EF01-2] Length = 981 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 13/177 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI +L+ D L+ L N I+ + +L+++F D+D+FK +ND+ GH +G Sbjct: 551 RIQRLAHFDPLTDLPNRVLLAERTQRQIAQEQARGGQLALLFLDLDHFKNVNDSLGHRIG 610 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINI 210 D ++ ++ +L + G V RLGG+EF +S AA +A+ L + + QI+ Sbjct: 611 DILLVAVARRLQSLIGPQDTVSRLGGDEFLLLLPATSAAHAAKVASALLTAVAQPFQIDP 670 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS-DIENNT 265 + T+S GIA E T+ RAD A+Y AK+SGRNR F+ D++ T Sbjct: 671 Y---ELSTTLSVGIAMCPADGESFDTLYQRADAAMYSAKQSGRNRYGFFTADLQART 724 >gi|94984686|ref|YP_604050.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300] gi|94554967|gb|ABF44881.1| diguanylate cyclase [Deinococcus geothermalis DSM 11300] Length = 368 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 7/152 (4%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N A +S+L ++V FD+D+FK +ND GH GD V+ ++ Sbjct: 200 DALTGLANRRAAEEQLSALARSGHGFTLVLFDLDHFKAVNDLHGHATGDLVLQGVARAAQ 259 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V R GGEEF + L + LR + + + +G +T G Sbjct: 260 HVLPRGGVAARWGGEEFLLILPPLPSAQVRALLDLLRAQLRSQRHGAVTG----VTACFG 315 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +A C E ++ RAD A+Y K+ GRN V Sbjct: 316 VATACPGEHPDDVLARADAAMYAVKRQGRNDV 347 >gi|117924704|ref|YP_865321.1| diguanylate cyclase [Magnetococcus sp. MC-1] gi|117608460|gb|ABK43915.1| diguanylate cyclase [Magnetococcus sp. MC-1] Length = 390 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 LS++F D+D FK IND +GH GD+V+ + ++ F+ R GGEEF A + Sbjct: 250 PLSLMFIDLDNFKSINDAYGHDRGDEVLKQAASAILTSMRRVDFLVRWGGEEFIAVLPNT 309 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALY 245 +E + + L + + P +T S G+AE + + ++I AD+ +Y Sbjct: 310 KAEEIVYVQDRLADV--GLGLRPDGAP---VTASLGLAELISDQAKDLESLIELADKRMY 364 Query: 246 VAKKSGRNRVVCFSDIENNTC 266 +AK+SG+NR +CF D E + Sbjct: 365 LAKQSGKNR-ICFGDNEEDMT 384 >gi|326424420|ref|NP_763512.2| GGDEF family protein [Vibrio vulnificus CMCP6] gi|319999810|gb|AAO08502.2| GGDEF family protein [Vibrio vulnificus CMCP6] Length = 459 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 31/218 (14%) Query: 52 YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRI----D 107 Y L P+Y I L+GY + +L +F++ R+ ++ D Sbjct: 253 YAALMPWY---------------QTQIVRLIGYPTALLLCLVFLAIYRLYTMAHSRSLHD 297 Query: 108 CLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 L+GL N F+ SL + ++ +++ D+D FKQIND GH GDKV+ Sbjct: 298 ELTGLPNRRYFMYSLEHHFEHAKKQGRDDTFAVINLDLDRFKQINDTHGHAAGDKVLIAC 357 Query: 159 SDQLVVVFGTPMFVGRLGGEEF-AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +++L + V R+GG+EF +A + E++ IL N L+ + + I + G I+ Sbjct: 358 AERLKSTLRSTDLVARIGGDEFLVLSARMTHEKDMEILLNKLKAALCSMPI-VYEGELIY 416 Query: 218 ITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNR 254 + IS G H+ S ++ +ADQ +Y KK+ + R Sbjct: 417 LHISIGYCLFHHEMKDSEEMLKQADQRMYNEKKANKMR 454 >gi|260777792|ref|ZP_05886685.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605805|gb|EEX32090.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 381 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 14/162 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +++++ D LSGL N SL S + I FDID+FK +ND +GH VGD+VI Sbjct: 229 LNKITYTDQLSGLHNRHYLQKVEQQSLAS--KGYFIGIFDIDHFKAVNDKYGHDVGDQVI 286 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ + + R+GGEEF +S Q+A + N +R I+ SQ + P+ Sbjct: 287 KRVAAIIKSRIRVADYAFRIGGEEFVVLINTTSVQDAKQVMNRIR--IDVSQ--FTQAPN 342 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +TIS GI P S + +AD LY AK+SGRN + C Sbjct: 343 --VTISGGIHPVVGTIPQS--LKKADALLYKAKESGRNVIYC 380 >gi|260222144|emb|CBA31416.1| hypothetical protein Csp_F37420 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 169 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 66/138 (47%), Gaps = 6/138 (4%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 ++V DID FK+IND++GH GD V+A + L + R GGEEF S Sbjct: 22 ALVLMDIDNFKRINDSYGHAGGDAVLAHAARMLSQLTRLSDIAVRYGGEEFCVLLHACSA 81 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQA 243 +EA A L + I G ++ T S G A R E + +I ADQA Sbjct: 82 EEAGRFAQRLVDEAGRQSVRIKDGRNVRFTFSVGYACAPDGQTRGGIESLEAVIDCADQA 141 Query: 244 LYVAKKSGRNRVVCFSDI 261 LY AK +GRN+V S I Sbjct: 142 LYAAKTAGRNQVQSSSGI 159 >gi|228955597|ref|ZP_04117597.1| Sensory box protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804073|gb|EEM50692.1| Sensory box protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 835 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 396 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 455 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 456 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 515 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 516 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 569 >gi|229082562|ref|ZP_04215025.1| Sensory box protein [Bacillus cereus Rock4-2] gi|228700994|gb|EEL53517.1| Sensory box protein [Bacillus cereus Rock4-2] Length = 835 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 396 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 455 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 456 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 515 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 516 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 569 >gi|218510445|ref|ZP_03508323.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5] Length = 641 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 12/164 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFKQINDNFGHPVGDKV 154 +LS D L+G+ N A L +E V F D+D+FK+ ND +GH GD+ Sbjct: 218 ELSNTDYLTGISNRRALDRRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRC 277 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + +++ L VV + +GR GGEEF + A LA +R +E I Sbjct: 278 LTVVANVLKAVVESSGGMIGRYGGEEFIVVMPAETPSIAMSLAEKIRMEVEFLAIAHDER 337 Query: 214 P--SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 P S +T+S G+A E + I+ AD ALY AK SGRN Sbjct: 338 PDDSPIVTVSIGVAFTREDVGEKVERIVREADLALYNAKASGRN 381 >gi|52140213|ref|YP_086617.1| sensory box/GGDEF family protein [Bacillus cereus E33L] gi|51973682|gb|AAU15232.1| sensory box/GGDEF family protein [Bacillus cereus E33L] Length = 892 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 511 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 512 RLGHGVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 571 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 572 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 626 >gi|75759044|ref|ZP_00739151.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493443|gb|EAO56552.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 931 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 492 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVMFLDLDRFKKINDR 551 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++++L + V R GG+EF +++AI + I N Sbjct: 552 LGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 611 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 612 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 665 >gi|332534728|ref|ZP_08410556.1| response regulator/GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505] gi|332035815|gb|EGI72299.1| response regulator/GGDEF domain protein [Pseudoalteromonas haloplanktis ANT/505] Length = 411 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/128 (42%), Positives = 70/128 (54%), Gaps = 5/128 (3%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 ++ DID+FK IND +GH VGD+V+ LS F + V RLGGEEFA + + Sbjct: 287 ALAMLDIDHFKSINDTYGHDVGDEVLKGLSICFSKYFKKHL-VARLGGEEFAVYFIDVDK 345 Query: 190 QEAAILANDLRKIIE-NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 QEA R IE NSQ S I TIS G A + I ++ +AD LY AK Sbjct: 346 QEALKRLEGFRYFIEMNSQ--EFSKAKIKFTISIGFANGPVYQ-IDELLKQADLKLYDAK 402 Query: 249 KSGRNRVV 256 +SGRN+VV Sbjct: 403 ESGRNKVV 410 >gi|325920655|ref|ZP_08182565.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] gi|325548845|gb|EGD19789.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas gardneri ATCC 19865] Length = 569 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL + LS++ D+D+FKQ ND+ GH GD ++A + Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRDLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L+ R GGEEF + EA +A +R I + +T Sbjct: 462 ELLLTRLRAEDVACRYGGEEFTVILPETDGAEAMRVAEQIRGFIAALAVTDGQRSLPRVT 521 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E S++I +AD ALY+AK GRNRV Sbjct: 522 ASIGVASFPIDGELGSSLIQKADAALYIAKHRGRNRV 558 >gi|294667325|ref|ZP_06732544.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602877|gb|EFF46309.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 569 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 8/157 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL LS++ D+D+FKQ ND+ GH GD ++A + Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L+ R GGEEF + +EA +A +R I ++ + +T Sbjct: 462 ELLLTRLRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRGYIAALAVSDGARALPKVT 521 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E +++I +AD ALY AK +GRNRV Sbjct: 522 ASIGVASFPVDGEQGASLIQKADAALYRAKHAGRNRV 558 >gi|220934770|ref|YP_002513669.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996080|gb|ACL72682.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] Length = 305 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 13/173 (7%) Query: 104 SRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N ++ + L+++ D+D+FK ND +GH GD+ + Sbjct: 116 ARQDPLTGLANRRMLDEAMEREWSRARRQGQPLAMLMCDVDHFKPYNDRYGHQAGDECLC 175 Query: 157 FLSD---QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 L++ L+ G V R GGEEF + E A +A ++ + N + Sbjct: 176 RLAELFQDLLHREGD--LVARYGGEEFVVLLPNTDEIGALRVAQGIQDALRNLDLGHEDT 233 Query: 214 PSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 P +T+S G+A + ST++ D+ LY+AK+ GR+R+V +D NN+ Sbjct: 234 PQGRLTLSIGLAALVPDHDDRSTLLAEVDRRLYLAKQQGRDRIVHAADHNNNS 286 >gi|187927389|ref|YP_001897876.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J] gi|187724279|gb|ACD25444.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ralstonia pickettii 12J] Length = 1221 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 25/187 (13%) Query: 83 GYISGSILKELFISYNRISQ--LSR---IDCLSGLLNHSAFISSL------GSYNEKLSI 131 G ++GSI+ + S R Q L R D L+GLLN +F+++L +E+ + Sbjct: 772 GQVAGSIVTFIETSERRRQQDELRRRATFDDLTGLLNRPSFVTALETRLQQADASERHPV 831 Query: 132 V-FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 V D+D FK+IND+ GH GD+++ ++++L G VGRLGG+EFA E Sbjct: 832 VAILDLDGFKEINDSLGHATGDQLLRGVAERLTDQLGPHADVGRLGGDEFAFVV---DES 888 Query: 191 EAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEP-----ISTIIYRADQAL 244 +A + ++E+ + S +G + I S G A + P + T++ AD A+ Sbjct: 889 YGPPIATRIEAVMESIRRPFSIAGLDLAINGSVGAA----RYPGAGLDVDTLLRSADVAM 944 Query: 245 YVAKKSG 251 YVAK+ G Sbjct: 945 YVAKREG 951 >gi|168214269|ref|ZP_02639894.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens CPE str. F4969] gi|170714256|gb|EDT26438.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens CPE str. F4969] Length = 624 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 KE+ I +R++ D L+ + N F S ++K +++F D+D+FK+IN Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198 DN+GH VGD+V+ ++ +GR+GG+EFAA S++E + N Sbjct: 239 DNYGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 LRK I+ + + SI ITI E+ I ++ +D+A+Y K Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343 >gi|309779911|ref|ZP_07674665.1| sensory box protein/GGDEF domain protein [Ralstonia sp. 5_7_47FAA] gi|308921270|gb|EFP66913.1| sensory box protein/GGDEF domain protein [Ralstonia sp. 5_7_47FAA] Length = 1056 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 25/187 (13%) Query: 83 GYISGSILKELFISYNRISQ--LSR---IDCLSGLLNHSAFISSL------GSYNEKLSI 131 G ++GSI+ + S R Q L R D L+GLLN +F+++L +E+ + Sbjct: 607 GQVAGSIVTFIETSERRRQQDELRRRATFDDLTGLLNRPSFVTALETRLQQADASERHPV 666 Query: 132 V-FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 V D+D FK+IND+ GH GD+++ ++++L G VGRLGG+EFA E Sbjct: 667 VAILDLDGFKEINDSLGHATGDQLLRGVAERLTDQLGPHADVGRLGGDEFAFVV---DES 723 Query: 191 EAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEP-----ISTIIYRADQAL 244 +A + ++E+ + S +G + I S G A + P + T++ AD A+ Sbjct: 724 YGPPIATRIEAVMESIRRPFSIAGLDLAINGSVGAA----RYPGAGLDVDTLLRSADVAM 779 Query: 245 YVAKKSG 251 YVAK+ G Sbjct: 780 YVAKREG 786 >gi|149190181|ref|ZP_01868456.1| putative regulatory components of sensory transduction system [Vibrio shilonii AK1] gi|148835928|gb|EDL52890.1| putative regulatory components of sensory transduction system [Vibrio shilonii AK1] Length = 320 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 88/171 (51%), Gaps = 17/171 (9%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N + I G + LS++ D+D+FK NDN+GH GD+ + ++ Sbjct: 148 DGLTKLFNRRYMDEKLTELIQWHGRHQMPLSVILMDVDHFKAFNDNYGHTEGDQCLINIA 207 Query: 160 DQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS---SGPS 215 L V+F + +VGR GGEEF +EA A +R+ I SQ+NI S + Sbjct: 208 QFLDVMFIRSGEYVGRYGGEEFVILLSKCDIREAEENAARVREGI--SQLNIPHQFSHTT 265 Query: 216 IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 +T+S G+ E I+ + AD+ LY AK++GRNR V S IE + Sbjct: 266 DRVTLSLGVFSLVPTGTETINELYESADKLLYQAKRTGRNRYV--SQIEGD 314 >gi|87310485|ref|ZP_01092614.1| probable two component system, transcriptional regulatory protein [Blastopirellula marina DSM 3645] gi|87286706|gb|EAQ78611.1| probable two component system, transcriptional regulatory protein [Blastopirellula marina DSM 3645] Length = 877 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 +R + +SR D L+GL L Y+ LS V DID F++IN+ +G Sbjct: 517 SRPAGVSRNDPLTGLATRRQLDEQLEREWFRAVRYHLPLSCVVIDIDSFEEINNQYGFEA 576 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+VI ++ + +V RL G+ F A + S+E +AA A L K++ S + I Sbjct: 577 GDQVIQRIAQIVQGHTRLTDYVCRLAGDRFLIAMVESNESQAAQFAERLCKVLAGSAVTI 636 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G ++ T S G+A+ + +I A++A+ +AK+ GRNRVV Sbjct: 637 -HGQTLTTTASFGVAQTHADTTNLDKLIELAEEAIVIAKQLGRNRVV 682 >gi|118580910|ref|YP_902160.1| GAF sensor-containing diguanylate cyclase [Pelobacter propionicus DSM 2379] gi|118503620|gb|ABL00103.1| diguanylate cyclase with GAF sensor [Pelobacter propionicus DSM 2379] Length = 355 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 13/175 (7%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHP 149 + QL+ D L+GL N F L E+ S++ D+D FK ND GH Sbjct: 180 HEETHQLAINDSLTGLNNRRYFDKVLPQEYERAHREGLPFSLMMIDVDNFKLFNDTHGHH 239 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQI 208 +GD+++A + L + F R GGEEF + + A +A +R +++ S+ Sbjct: 240 LGDRILATIGRVLRKTLRSIDFAFRYGGEEFVVILPETDLESAHKVAERIRQRVMAESRK 299 Query: 209 NISSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSD 260 + + +T+S GI+ C+ + T++ ADQ LY AK++GRNRV+ D Sbjct: 300 LLRNPQDRPVTVSVGIS--CYPRDAACSITLLAMADQLLYQAKRTGRNRVLVAED 352 >gi|300309853|ref|YP_003773945.1| two-component response regulator with GGDEF domain [Herbaspirillum seropedicae SmR1] gi|300072638|gb|ADJ62037.1| two-component response regulator with GGDEF domain (diguanylate cyclase) protein [Herbaspirillum seropedicae SmR1] Length = 277 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 16/169 (9%) Query: 107 DCLSGLLNHSAFISSL-GSYNE------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L +N L+++ DID F + ND++G GDKV+ + Sbjct: 105 DALTGLANRRQFERGLLEEFNRAARTSLSLAVIMIDIDLFDEYNDSYGRMAGDKVLRRVG 164 Query: 160 DQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + P + R G +E A GS + A I+A +RK IE I S+ P+ + Sbjct: 165 SAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIELLDIPHSASPTGRV 224 Query: 219 TISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 TIS GI+ +R EP T++ A+++L +AK +GR+ C +E+ Sbjct: 225 TISIGISSVAPQRQVDEP-ETVLREAEESLALAKSAGRD---CIRTVED 269 >gi|300088209|ref|YP_003758731.1| diguanylate cyclase and metal dependent phosphohydrolase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527942|gb|ADJ26410.1| diguanylate cyclase and metal dependent phosphohydrolase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1108 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 15/177 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 +LFI N + D L+GL NH F IS + S++ D+D FK ND Sbjct: 718 QLFIQAN---TRANTDELTGLYNHRHFHERVEQEISRGSRFGITFSLILLDLDLFKVYND 774 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+++ + + R GGEEFA + +A +A LRK IE Sbjct: 775 IYGHLAGDQLLRKVGQMIQSSIRNIDLPFRYGGEEFAVLLPETRIDDAYRVAERLRKTIE 834 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRNRVVCFSD 260 SS + +T S G++ + + +I+RAD ALY AK++GRNR S+ Sbjct: 835 AR----SSFREMPVTASLGVSNWPNDGLLKEELIHRADTALYRAKRTGRNRTCLASE 887 >gi|226942092|ref|YP_002797166.1| hypothetical protein LHK_03180 [Laribacter hongkongensis HLHK9] gi|226717020|gb|ACO76158.1| Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Laribacter hongkongensis HLHK9] Length = 1113 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 13/166 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151 RI L+ D L+GL N +A I LG + ++++ D+D FKQIND GH G Sbjct: 671 RIRYLAEHDSLTGLYNRAALIERLGDVLAQARRQPHVGAVMYLDLDRFKQINDTLGHEAG 730 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQIN 209 D ++ ++ ++ V T VGR+GG+EF A L AA+ L ++E Sbjct: 731 DALLIEVARRIRSVVRTGDAVGRMGGDEFVVLLARLEYPRDAAAVADKLLAALLEPF--- 787 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254 + SG + S G+A E T++ AD A+Y K GR R Sbjct: 788 VLSGQRVESPASIGVAMFPQDGEDADTLLRHADAAMYDVKTQGRGR 833 >gi|206562440|ref|YP_002233203.1| RNase II stability modulator [Burkholderia cenocepacia J2315] gi|198038480|emb|CAR54438.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia J2315] Length = 667 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 17/186 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDID 137 SG + E + R+++L+ D L+GL N H+A + ++ I+F D+D Sbjct: 218 SGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIHAAIAAESEQTRGQVGILFLDLD 277 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAA 193 FK++ND++GH GD+++ +S + + + RLGG+E F E A Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSAIISGCLPSGATLARLGGDEFLVLFEQGTRPLLEATAQ 337 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I+ LR I + + + SI I + H + + T+I AD A+YVAK+ G++ Sbjct: 338 IILERLRTPIHLGLMEVYTSCSIGIAMHP-----QHGDSLETLIRSADTAMYVAKEEGKH 392 Query: 254 RVVCFS 259 FS Sbjct: 393 TYRVFS 398 >gi|170078108|ref|YP_001734746.1| GGDEF domain-containing protein [Synechococcus sp. PCC 7002] gi|169885777|gb|ACA99490.1| GGDEF domain protein [Synechococcus sp. PCC 7002] Length = 519 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 16/177 (9%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 ++E + NRI QLS D L+G+ N F +S L S+ FFD+D K I Sbjct: 318 VQERKKAENRIRQLSLTDELTGVYNRRGFFMLVEQELSLLERQKLPFSLFFFDVDNLKMI 377 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+ GH VGD+VI + L F + RLGG+EF A ++ EA ++ L+ Sbjct: 378 NDHLGHGVGDRVIVDAAQILRDSFRRADILARLGGDEFTCFA-PVNQAEADLICQRLQTA 436 Query: 203 IENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAK---KSGRN 253 I N N ++IS G A E + T++ +AD+ +Y K K GR Sbjct: 437 IAN--FNQQQQRPYQLSISTGYASYTEYPGNASLRTLLKQADEKMYRNKRQRKQGRQ 491 >gi|219667763|ref|YP_002458198.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2] gi|219538023|gb|ACL19762.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2] Length = 515 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 S ID +G N + + + +L +++F DID FK IND +GH GD ++ +++ Sbjct: 341 SSIDPQTGFFNKQYMLDYDKAESPELGNTALLFIDIDNFKSINDLYGHLAGDSILKSVAE 400 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 + G+ V R GG+EF + EA + A +R + N+ I + +++ Sbjct: 401 CIRCSIGSEAQVIRFGGDEFVVIFANPGKDEAYLAAEAIRTKV-NALILPEHYGDLTLSL 459 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+AE + P+ +I +AD+A+Y AK G+NR + Sbjct: 460 SIGLAE--GRVPVRELITQADEAMYSAKSQGKNRTM 493 >gi|74317384|ref|YP_315124.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans ATCC 25259] gi|74056879|gb|AAZ97319.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Thiobacillus denitrificans ATCC 25259] Length = 738 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 25/190 (13%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 E ++ RIS ++ D L+GL N + I S K +++F D+D FK+IND Sbjct: 291 EAYMQEKRISHMAMHDALTGLPNRTYLDARINEAIEQSRSSATKFALLFIDLDNFKRIND 350 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI---------L 195 +GH GD+++ + + L + R GG+EF E + L Sbjct: 351 LYGHKAGDQLLVSVGELLRASLRATDVLARWGGDEFVVLLPFPGEIDMVRRIASELLDGL 410 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 NDL K ++ + +S G +I+ + E T++ +AD+AL+ AK GRN + Sbjct: 411 RNDLEKQCRDTFVTVSIGVAIYPDDA---------ESAETLLVQADKALFYAKSQGRNNI 461 Query: 256 VCFSDIENNT 265 ++D++ Sbjct: 462 QLYADLQTRA 471 >gi|27380653|ref|NP_772182.1| hypothetical protein bll5542 [Bradyrhizobium japonicum USDA 110] gi|27353818|dbj|BAC50807.1| bll5542 [Bradyrhizobium japonicum USDA 110] Length = 835 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 15/163 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 RI+ ++ D L+ L N F L +++ +++ D+D FK IND+FGHP GD+ Sbjct: 403 RIAHMAHHDGLTDLPNREYFQQRLKQALDQAGGKRVGVLYIDLDLFKNINDSFGHPAGDR 462 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQE--AAILANDLRKIIENSQI 208 ++ ++++L RLGG+EFA AA + +E AA+L + LR E Sbjct: 463 LLKEVAERLTTAVRGANLAARLGGDEFAVILAADVSPNEASACAALLIDMLRAPYEIDGQ 522 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + G SI I +S G + ++ AD ALY AK G Sbjct: 523 EMVIGASIGIALSPGDGVTSEE-----LMRNADMALYRAKSDG 560 >gi|296505772|ref|YP_003667472.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] gi|296326824|gb|ADH09752.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] Length = 892 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 512 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 513 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 572 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 573 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 626 >gi|269965354|ref|ZP_06179474.1| GGDEF family protein [Vibrio alginolyticus 40B] gi|269830000|gb|EEZ84229.1| GGDEF family protein [Vibrio alginolyticus 40B] Length = 527 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 9/189 (4%) Query: 75 SITISLLLGYISGSILKELFISY-NRISQLSR---IDCLSGLLNHSAFISSLGS---YNE 127 + + L+L + LKE + N ++QL + D L+ L N L ++ Sbjct: 336 ELQLKLILSELENKELKETTKQHKNTVAQLQQDVFTDPLTSLHNRRWLEVKLKDLLLHDT 395 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG-TPMFVGRLGGEEFAAAALG 186 +++ DID+FK IND H VGDK I +S +L F R GGEEF Sbjct: 396 PFALMVIDIDHFKSINDELSHLVGDKAIKSVSQELASYFKFKSASCVRFGGEEFLVILEN 455 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 + + A + A + R+ I + G +T+S GI E YRAD+ALY Sbjct: 456 TQLERAEMHAENYRERIYQYGWDDILGER-GLTVSIGITLHREGENTQRTFYRADKALYR 514 Query: 247 AKKSGRNRV 255 AK +GRN+V Sbjct: 515 AKANGRNQV 523 >gi|254502224|ref|ZP_05114375.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia alexandrii DFL-11] gi|222438295|gb|EEE44974.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia alexandrii DFL-11] Length = 831 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 18/192 (9%) Query: 83 GYISG-----SILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEK----L 129 GY +G S + E+ ++ ++QL+ D L+G+ N + F+ L + EK L Sbjct: 362 GYFTGYRGVASDITEMKVANALVTQLAEQDALTGIGNRNWFLKQADLKLAAQLEKRANTL 421 Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 ++ D+D FK +ND GH GD ++ ++++ + + R GG+EFAA S+ Sbjct: 422 TLFLIDLDNFKVVNDTSGHAAGDDLLIQVAERFRSISEGRTLLARFGGDEFAAVGEFVSD 481 Query: 190 QEAAILANDLRKIIENSQINISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 Q A + AN+L K+ G I + G + R ++ ++ AD ALY A Sbjct: 482 QAAEVFANELVKVTRKP---FKVGKREFAIGATVGFSRLRKTNSSVNDLMREADIALYKA 538 Query: 248 KKSGRNRVVCFS 259 K+ GR + + F+ Sbjct: 539 KEGGRGQALAFA 550 >gi|77361433|ref|YP_341008.1| sensory box protein [Pseudoalteromonas haloplanktis TAC125] gi|76876344|emb|CAI87566.1| conserved protein of unknown function ; putative sensory box protein [Pseudoalteromonas haloplanktis TAC125] Length = 1007 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 13/139 (9%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 E+L I+ DID+FK +ND GH GD ++ F+S +++ FV R+GG+EF Sbjct: 606 EQLVIMLLDIDHFKDVNDTLGHHYGDALLKFVSQRILESAKNAEFVARIGGDEFVIVFSK 665 Query: 187 SSEQEAAILANDLRKIIENSQINISSG-----PSIHITISAGIAERCHK-EPISTIIYRA 240 EQ +++I EN +++SS + I+ S GIA + E ++ A Sbjct: 666 IKEQH-------IKQIAENILLSLSSAIYIENEELFISASIGIASAPNDGENTEQLLKAA 718 Query: 241 DQALYVAKKSGRNRVVCFS 259 DQA+Y AK +GRN FS Sbjct: 719 DQAMYKAKVNGRNGFEFFS 737 >gi|224826032|ref|ZP_03699135.1| diguanylate cyclase [Lutiella nitroferrum 2002] gi|224601669|gb|EEG07849.1| diguanylate cyclase [Lutiella nitroferrum 2002] Length = 262 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 18/172 (10%) Query: 98 NRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ LS D L+GL N + LG + + D+D+FK IND +GH V Sbjct: 94 QRLHWLSSRDELTGLPNRRHALVRLREELQRLGRSGGQFCLTLADVDHFKSINDGYGHDV 153 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++ L R GGEEF SS +E + LR+ Q+ + Sbjct: 154 GDRVLGAIAHGLSEGVRDYDVCARWGGEEFLLLFPHSSIEEVQSVLVRLRR-----QVGV 208 Query: 211 SSGP-----SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SG + +T+S G+ R EP+ I+ RADQALY AK GR+ VV Sbjct: 209 LSGELLPAGAAGLTLSFGLTLCRDAAEPLDAILQRADQALYQAKGQGRDCVV 260 >gi|257059320|ref|YP_003137208.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC 8802] gi|256589486|gb|ACV00373.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC 8802] Length = 624 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 13/180 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 + +EL ++ + QL+ +D L+ + N F L + LS++ D+D+FK Sbjct: 442 QLYRELRLANEELEQLAFVDSLTEVANRRRFDEYLQQEWRRLTRAKQPLSLIVCDVDFFK 501 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND +GHP GDK + ++ L P V R GGEEFA + A +A ++ Sbjct: 502 FYNDTYGHPAGDKCLQQVAQVLQQSVKRPADLVARHGGEEFAIVLPNTDISGAVHIAGEV 561 Query: 200 RKIIENSQI-NISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255 R + ++ + SS S ++T+S GIA + P + ++ AD ALY AK GR+R+ Sbjct: 562 RSRLRGLKLEHRSSLVSDYVTLSFGIAT-TYPTPQTVVENLLIDADLALYQAKGQGRDRI 620 >gi|294338481|emb|CAZ86807.1| conserved hypothetical protein; putative GGDEF domain; putative exported protein [Thiomonas sp. 3As] Length = 591 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 14/206 (6%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128 +L + + ++L+L Y + +L R+ L D L+GLLN + S ++ Sbjct: 375 ALQWVLVFLALVLTYGLSVRVAQLRERATRLQDLLLKDPLTGLLNRNGLFDSGQRQLDRT 434 Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 +++++ D+D K+IND FGH GD +I S +L FG RLGG+EFA Sbjct: 435 QDSQAFVAVLWLDLDGLKRINDQFGHAAGDALIQATSARLREAFGPDAVCARLGGDEFAV 494 Query: 183 AALGSSEQEAAILANDL-RKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYR 239 + LA DL R +E + + SG + S G+A H + + ++ Sbjct: 495 VL---PNLPSPRLAEDLARHALERLRAPYALSGREFRASGSIGVALYPSHAQTLEELLRL 551 Query: 240 ADQALYVAKKSGRNRVVCF-SDIENN 264 AD A+Y AK GR+ V + D+E + Sbjct: 552 ADVAMYRAKALGRDTYVVWEPDMEAD 577 >gi|294666570|ref|ZP_06731810.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603645|gb|EFF47056.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1000 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 1/122 (0%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK+IND++GH VGD V++ + + L F R GGEEF AA G +A Sbjct: 878 DIDHFKRINDDYGHEVGDAVLSAIGEVLGEQDQAHCFAARHGGEEFLLAATGLDAVQARA 937 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L +R+ + + +++ + G ++ T S G+A ++ AD+ LY AK+ GR+R Sbjct: 938 LFERMRQRLADIEVD-AQGMTVRCTASMGMAMSEEAPSRRELLALADRRLYEAKRQGRDR 996 Query: 255 VV 256 ++ Sbjct: 997 LI 998 >gi|294627172|ref|ZP_06705760.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598605|gb|EFF42754.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1000 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 1/122 (0%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK+IND++GH VGD V++ + + L F R GGEEF AA G +A Sbjct: 878 DIDHFKRINDDYGHEVGDAVLSAIGEVLGEQDQAHCFAARHGGEEFLLAATGLDAVQARA 937 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L +R+ + + +++ + G ++ T S G+A ++ AD+ LY AK+ GR+R Sbjct: 938 LFERMRQRLADIEVD-AQGMTVRCTASMGMAMSEEAPSRRELLALADRRLYEAKRQGRDR 996 Query: 255 VV 256 ++ Sbjct: 997 LI 998 >gi|54295738|ref|YP_128153.1| hypothetical protein lpl2826 [Legionella pneumophila str. Lens] gi|53755570|emb|CAH17069.1| hypothetical protein lpl2826 [Legionella pneumophila str. Lens] Length = 314 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 12/157 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 LS D L+GL N F+ L SY N+ +++FFD+D FKQ+ND GH GDK Sbjct: 161 HLSLTDELTGLSNRRGFLK-LASYLFQKCQKDNKNFTLLFFDLDKFKQVNDQLGHAEGDK 219 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ S L+ F + RLGG+EF G +E+E + + L+ +++ + + Sbjct: 220 ILKIFSKSLLQNFRCYDVIARLGGDEFCVFCSGLNEKEVDNITHRLKDSLKSQE---TKD 276 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 SI ++ + + + ++ AD +Y KKS Sbjct: 277 YSIEFSVGSIEYNQAKHRTLDDMLAMADAKMYRDKKS 313 >gi|95929750|ref|ZP_01312491.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans DSM 684] gi|95134046|gb|EAT15704.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans DSM 684] Length = 388 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 17/188 (9%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDI 136 +IS + E + +I QL+ D L+GL N F+ + N+ L+++F D+ Sbjct: 202 FISIEDITEFHRAQKKIEQLAYYDALTGLPNRRLFMDRINQTVKRAERDNDHLALLFIDL 261 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAIL 195 D FK +ND FGH GD + ++ +L V RL G+EF + + + ++ Sbjct: 262 DKFKSVNDRFGHSGGDDYLCEVATRLESAVRKSDTVARLSGDEFVVLLSTVHNGNDGELM 321 Query: 196 ANDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSG 251 A +K+ E Q + G + I S GIA C+ + +T ++ AD A+Y AK G Sbjct: 322 A---KKLFEQLQPTVEIDGHDVSINASIGIA--CYPQDATTAEGLLQCADTAMYRAKHQG 376 Query: 252 RNRVVCFS 259 +N F+ Sbjct: 377 KNNFCSFT 384 >gi|218234510|ref|YP_002370125.1| sensory box/GGDEF family protein [Bacillus cereus B4264] gi|218162467|gb|ACK62459.1| sensory box/GGDEF family protein [Bacillus cereus B4264] Length = 814 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 375 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 434 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 435 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 494 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 495 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 548 >gi|197337245|ref|YP_002157867.1| sensory transduction/ ggdef family protein [Vibrio fischeri MJ11] gi|197314497|gb|ACH63946.1| sensory transduction/ ggdef family protein [Vibrio fischeri MJ11] Length = 411 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 80/163 (49%), Gaps = 13/163 (7%) Query: 107 DCLSGLLNHSAFISSLG----SYNEKLSI-VFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL N A L S++ I + DID FK IND FGH GD+VI ++ Sbjct: 253 DYLTGLFNRRAITEKLNHNINSHDCCSEICLLIDIDNFKWINDQFGHASGDEVIVRFANL 312 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 V G VGR GGEEF + Q+A +A + K E S I IT S Sbjct: 313 CKKVVGESGIVGRWGGEEFIVFLSNHNLQQAKAIATTILKKCELEIYQFSDHRHI-ITAS 371 Query: 222 AGIAE----RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 GI++ C+ I ++I AD+ +Y AK+ G+N++V D Sbjct: 372 IGISQCQVTSCN---IESLIQTADKNMYQAKQQGKNQIVSPED 411 >gi|168216320|ref|ZP_02641945.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens NCTC 8239] gi|182381791|gb|EDT79270.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens NCTC 8239] Length = 624 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 KE+ I +R++ D L+ + N F S ++K +++F D+D+FK+IN Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198 DN+GH VGD+V+ ++ +GR+GG+EFAA S++E + N Sbjct: 239 DNYGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 LRK I+ + + SI ITI E+ I ++ +D+A+Y K Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343 >gi|168207960|ref|ZP_02633965.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens E str. JGS1987] gi|170660745|gb|EDT13428.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens E str. JGS1987] Length = 624 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 KE+ I +R++ D L+ + N F S ++K +++F D+D+FK+IN Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198 DN+GH VGD+V+ ++ +GR+GG+EFAA S++E + N Sbjct: 239 DNYGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 LRK I+ + + SI ITI E+ I ++ +D+A+Y K Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343 >gi|53804221|ref|YP_114116.1| sensory box protein [Methylococcus capsulatus str. Bath] gi|53757982|gb|AAU92273.1| sensory box protein/GGDEF domain protein [Methylococcus capsulatus str. Bath] Length = 1346 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 23/180 (12%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYF 139 S LKE + I L+ D LS L N ++ Y E+L++VF D+D+F Sbjct: 897 SSLKE---AEEHIHHLAYYDPLSALPNRR-YLMERAEYALALAERRKEELAVVFLDVDHF 952 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALG--SSEQEAAIL 195 K +ND+ GH VGD+++ ++ Q+ V RLGG+EFA LG + Q A + Sbjct: 953 KDVNDSLGHQVGDELLVRVATQIKEFTRETDTVARLGGDEFALLLPDLGRDAVSQVADKI 1012 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254 LRK E+ SG + +T S GI+ H T++ AD A+Y AK+ GRN+ Sbjct: 1013 LAALRKPFEH------SGQTFAVTGSIGISLYPHDGTDFETLLRNADTAMYHAKQQGRNQ 1066 >gi|312622266|ref|YP_004023879.1| diguanylate cyclase with gaf sensor [Caldicellulosiruptor kronotskyensis 2002] gi|312202733|gb|ADQ46060.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor kronotskyensis 2002] Length = 557 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 22/178 (12%) Query: 97 YNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 Y ++ ++ +D L+G N +S G Y +SI FD+D FK++ND +GH Sbjct: 382 YQQMRSMAMVDGLTGAFNRIYLYEVLEREIQASAGRY--PISIALFDVDNFKKLNDTYGH 439 Query: 149 PVGDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GDKV+ Q +V V R GGEEF EA + +R+ I Sbjct: 440 LFGDKVL-----QTIVRIAKERVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRRAI 494 Query: 204 ENSQINISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 E+ I + +T+S GIA H + + +I AD A+Y AK SG+N V ++ Sbjct: 495 ESETIE-DNLIQTRVTVSFGIASYPLHADNVKDLIKCADIAMYRAKSSGKNCTVVYNQ 551 >gi|303241532|ref|ZP_07328033.1| response regulator receiver modulated diguanylate cyclase [Acetivibrio cellulolyticus CD2] gi|302590950|gb|EFL60697.1| response regulator receiver modulated diguanylate cyclase [Acetivibrio cellulolyticus CD2] Length = 1225 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 93/208 (44%), Gaps = 45/208 (21%) Query: 103 LSRIDCLSGLLN----HSAFISSLGSYN-EKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 L+ D L+G+ N + FIS + ++SI+FFD+D+FK +ND +GH GD V+ Sbjct: 994 LATTDELTGINNKRNLNRLFISQFSTRKLREISIIFFDLDFFKSVNDTYGHQAGDCVLRE 1053 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + L GR GGEEF A +SE+ A +A L+K IE +I I + +I Sbjct: 1054 MGKILRDTLRPYDIFGRYGGEEFLIALPETSEENAIAVAKKLKKKIEECEI-IYNDITIK 1112 Query: 218 ITISAGI-----------AERC-------------------HKEPI-----STIIYRADQ 242 IT S GI E C H E + +I AD Sbjct: 1113 ITASFGIVSLIKNEQYVCKEICAANLKSIFEVDPKEVKNWDHVEEKKLQIPALLISMADM 1172 Query: 243 ALYVAKKSGRNRV----VCFSDIENNTC 266 ALY AK + N+ V SD NNTC Sbjct: 1173 ALYEAKSTRCNKCGYSSVKKSDFHNNTC 1200 >gi|253699554|ref|YP_003020743.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M21] gi|251774404|gb|ACT16985.1| diguanylate cyclase with PAS/PAC sensor [Geobacter sp. M21] Length = 297 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 ++ + ++ Q +D L+G+ N SL S + ++F D+D+FK +ND Sbjct: 125 QILAALEQLKQDVLVDPLTGVGNRRLADMSLESRLHDWQTHRRPFGVLFMDVDHFKSVND 184 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ L + F V R GGEEF A + A +A +R + Sbjct: 185 RYGHKTGDEVLRMLGKTISNTFRKVDTVARWGGEEFVAILPATRLPALASIAERVRSAVA 244 Query: 205 NSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRN 253 S + + G + +T+S G IAE + +II RAD +Y +K GRN Sbjct: 245 GSFL-MEEGQRVGVTLSIGGTIAE--TGDNAESIISRADAQMYRSKAGGRN 292 >gi|163749013|ref|ZP_02156264.1| extracellular solute-binding protein, family 3/GGDEF domain protein [Shewanella benthica KT99] gi|161331389|gb|EDQ02277.1| extracellular solute-binding protein, family 3/GGDEF domain protein [Shewanella benthica KT99] Length = 222 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 18/165 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVI 155 + +L+ ID ++ + N FI L + LS++ FDID FK INDNFGH VGD +I Sbjct: 58 LQRLASIDAMTDIYNRRYFIELLQQACDDNQTGLSLLLFDIDRFKLINDNFGHSVGDFII 117 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISS 212 + + R+GGEEF G + +++ LA ++ + NS NI+ Sbjct: 118 CEMVKTIKRQLPPEAVFARIGGEEFCVLIQGITAEQSQKLAKRVQSSVTNSHYCHDNINH 177 Query: 213 GPSIHITISAGIAERCHKEPI----STIIYRADQALYVAKKSGRN 253 I+IS G+ + E + +I RAD +Y AK GR+ Sbjct: 178 A----ISISLGVV---YSEDVYIDHQFLINRADHLMYTAKSMGRD 215 >gi|332297417|ref|YP_004439339.1| diguanylate cyclase [Treponema brennaborense DSM 12168] gi|332180520|gb|AEE16208.1| diguanylate cyclase [Treponema brennaborense DSM 12168] Length = 282 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 12/168 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 + +L+ +D L+G N +L Y ++ S++ DID FK++ND +GH V Sbjct: 113 RKTEELAMLDGLTGAFNRRYMDVALKKELNRSTRYGKQFSLIILDIDDFKRLNDTYGHEV 172 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ SD R GGEEF + A +LA +R +E++ I+ Sbjct: 173 GDIVLQEFSDAARSAIREEDVFCRYGGEEFLVILPETDTSGAYVLAERIRHQLESAAIHE 232 Query: 211 SSGPSIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + G IT SAG + + + + ++ R D+ALY AK +G+N+ V Sbjct: 233 TYG----ITFSAGTVTYPDYADNSADLLRRVDRALYQAKFNGKNQTVS 276 >gi|325917833|ref|ZP_08180012.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325535944|gb|EGD07761.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 954 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 14/159 (8%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN S + ++ L++V D+D+FKQ+ND GH VGD V+A + Sbjct: 790 DALTGLLNRSGILDAMTEELQHCAHAEHPLAVVLIDLDHFKQVNDEHGHLVGDAVLAKVG 849 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSI 216 +L VGR GGEE G + Q + LR I E + ++ + + Sbjct: 850 ARLTACLRDSDKVGRYGGEELLLLLPGMTRQS----QHRLRAIHEAISLPPYDVGAVRPL 905 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G+A + +T++ RAD+ALY AK GRNR+ Sbjct: 906 QVTCSVGVAWFRIGDTAATLLARADEALYRAKGHGRNRI 944 >gi|294010343|ref|YP_003543803.1| putative signal transduction protein [Sphingobium japonicum UT26S] gi|292673673|dbj|BAI95191.1| putative signal transduction protein [Sphingobium japonicum UT26S] Length = 686 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 22/188 (11%) Query: 89 ILKELFISY----NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDID 137 +LK+ + Y +++++ +D L+G N S F LG + + + F DID Sbjct: 247 VLKDRVVEYEAAERELTRIAFVDHLTGAPNRSHFYRELGDRSRRTDNAAFVRHLAFLDID 306 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 F QIN+ +GH GD V++ ++ +L + + R GG+EF LG QE + Sbjct: 307 GFHQINNAWGHDAGDHVLSEIARRLQDLALASEAIFCRYGGDEF---LLGFEAQE--VET 361 Query: 197 NDLRKIIENSQINISS-----GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 L+ + E ++ +S+ ++ +T S G++ I I AD ALY AK+SG Sbjct: 362 ERLQNLAEAARKAVSAPISYLAQTLRVTASVGLSADDADVVIERSIKSADLALYRAKESG 421 Query: 252 RNRVVCFS 259 R+R V F Sbjct: 422 RDRAVLFE 429 >gi|262170750|ref|ZP_06038428.1| GGDEF family protein [Vibrio mimicus MB-451] gi|261891826|gb|EEY37812.1| GGDEF family protein [Vibrio mimicus MB-451] Length = 505 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 20/241 (8%) Query: 37 IFIATVIFIANIFLFYIGLTPFYGLEYILVE----NLSLVIISITISLLLGYISGSI--- 89 +F ++V+++ N+++ + P +L + + S IS + + +I Sbjct: 265 LFFSSVMYVVNLWVVVTLIKPITAANQVLQQFKTSGGKMPDASTFISAEMKEFASTINHI 324 Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIND 144 + +L S + S D L+ + N L Y L + DIDYFK ND Sbjct: 325 VTQLDESQQVLRWQSEHDPLTRISNRRYLEKQLKGYLSDRPCRYLVLYLIDIDYFKPFND 384 Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202 NFGH GD+ + ++ L + F V R GGEEF SE +A A + K+ Sbjct: 385 NFGHLAGDEALCSVAQALQAIEFDGEKIVTRFGGEEFCVVLASDSELDAEQFAQQIHTKV 444 Query: 203 IENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 E + N ++T+S G I+ R + ++ ++AD ALY AK+SGRNR V Sbjct: 445 AELAIANPQDSDFQYLTVSIGGVYAISPRM--DAYLSLFHQADMALYEAKESGRNRYVVR 502 Query: 259 S 259 S Sbjct: 503 S 503 >gi|262040014|ref|ZP_06013277.1| sensory box/GGDEF domain/EAL domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042630|gb|EEW43638.1| sensory box/GGDEF domain/EAL domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 595 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + R+ + D L+G+ N +F ++ + Y ++ FD+D FK +N Sbjct: 172 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVN 231 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GDK++ L+ +L T + RLGG+EFA + +E+ A AN +R+ I Sbjct: 232 DTLGHDAGDKLLQDLASRLSFFRKTSEMLYRLGGDEFAMLSYDLTEEMALERANVIREKI 291 Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 ++QINI + I I IS G E + +Y+ AD ALY AKK G V Sbjct: 292 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 342 Query: 257 CF 258 F Sbjct: 343 IF 344 >gi|190891269|ref|YP_001977811.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190696548|gb|ACE90633.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 709 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 89/176 (50%), Gaps = 23/176 (13%) Query: 98 NRISQLSRI-------DCLSGLLNHSAFISSLGSYNEKLS----IVFFDIDYFKQINDNF 146 R+ QL++ D LSGLLN +S L ++ S + D+D FK +ND + Sbjct: 281 RRLRQLAQAALYEAGHDSLSGLLNRQGLLSLLDELDDTASSPPRLYLVDLDGFKAVNDAW 340 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKII 203 GH VGD +I +S L+ + RLGG+EFA +G + E E AILA Sbjct: 341 GHAVGDDLIRLVSKALMACHPEVVAAARLGGDEFALVHVGPATCEEMERAILA----LFA 396 Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 E +I+ G +I + S G A R EP+ ++ RAD ALY AK +GR + V + Sbjct: 397 EPFKID---GRTIEVGASIGAATRDGDIEPLE-LLRRADMALYRAKANGRGQAVEY 448 >gi|159901978|gb|ABX10709.1| GGDEF family membrane protein [uncultured planctomycete 8FN] Length = 239 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 21/183 (11%) Query: 93 LFISYNRISQLSR-------IDCLSGLLNHSAFISSLGSY------------NEKLSIVF 133 LF+ R + L R D L+ L N AF +L + + + + Sbjct: 57 LFVENRRSADLIRDYEIQALTDPLTNLPNRRAFDGNLTALIEDEQKKKKPCNDRSIFLAI 116 Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 D+D+FK IND GHP GD+V+ F++ + RLGG+EF + S A Sbjct: 117 LDVDHFKPINDTKGHPTGDRVLRFVAQTIYSSIPDKCVAARLGGDEFGIVFVDVSPDWVA 176 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ +IE + + TIS G+ + +I R D+ALY+AK GRN Sbjct: 177 GSLKSIKALIEKDSLQRKD--LVPTTISVGLTNLNSSDSYDSIYDRVDRALYLAKSEGRN 234 Query: 254 RVV 256 + Sbjct: 235 SIT 237 >gi|126172549|ref|YP_001048698.1| diguanylate cyclase [Shewanella baltica OS155] gi|125995754|gb|ABN59829.1| diguanylate cyclase [Shewanella baltica OS155] Length = 389 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150 ++I L+ D L+GL N A L + +++ S++ D+D+FK+IND +GH Sbjct: 222 SKIRMLAERDQLTGLWNRRAMHKFLNNIHQRWLRDNVPYSMILLDLDHFKEINDQYGHDA 281 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + + V + R GGEEF + A +A L ++++++ I Sbjct: 282 GDLALLTAARLFGSVLRENDALCRHGGEEFLVILPATDAPAARAVAEKLHQVLKDNSF-I 340 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G +I I S G A ++ +ADQA+Y AK GR+R+ Sbjct: 341 WQGVTIKIHASLGYATIYQGCQPDKLLIQADQAMYRAKSEGRDRI 385 >gi|307721632|ref|YP_003892772.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] gi|306979725|gb|ADN09760.1| diguanylate cyclase [Sulfurimonas autotrophica DSM 16294] Length = 357 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 112/229 (48%), Gaps = 15/229 (6%) Query: 39 IATVIFIANIFLF-YIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97 I T I+I IF++ YIG L L+I S + L Y ++ + Sbjct: 125 ILTGIYIVTIFIYSYIGHKGAISSTDTLQVLFGLLIFS-GLVYLFEYSRKEAFSKMMDAI 183 Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL---SIVFF--DIDYFKQINDNFGHPVGD 152 +++ +LS +D L+ L N F++ NE+L S++F+ DID FK ND +GH GD Sbjct: 184 HQLEKLSYVDELTQLYNRH-FLNIHILNNEELNDKSVLFYIADIDNFKAYNDTYGHQKGD 242 Query: 153 KVIAFLSDQLVVVFG--TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-N 209 + + ++D G FV RLGGEEF + I + K++E+ I + Sbjct: 243 EALVQIADATKKAIGDDNTHFVIRLGGEEFGGFIFDEENPQQRI--EEFFKVVESLSIEH 300 Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I++ S TISAG E + S I D+ALY AKK+G+N+V+ Sbjct: 301 INNEYSTTCTISAGAVYCENWDAKNFSKIYKITDEALYEAKKNGKNQVI 349 >gi|306840941|ref|ZP_07473683.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] gi|306289064|gb|EFM60326.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] Length = 389 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152 N + + D L+GLLN + L + + ++ DID+FK IND +GHPVGD Sbjct: 210 NELQRERDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVIIADIDHFKAINDAYGHPVGD 269 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211 +V+ + L VGR+GGEEF G++E E L N L ++ + + Sbjct: 270 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 328 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +G +T S GIA E + RAD AL K GRNRV Sbjct: 329 AGQK--VTSSFGIAMVRSGETLWETAARADLALMRVKNRGRNRV 370 >gi|269103399|ref|ZP_06156096.1| putative c-di-GMP phosphodiesterase A-related protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163297|gb|EEZ41793.1| putative c-di-GMP phosphodiesterase A-related protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 674 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 15/173 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 I QL D L+GL N F L + ++ L +++ DID FK IND+ GH +GD+V+ Sbjct: 244 IEQLIHTDPLTGLYNRHGFTRQLEQHIQQQIPLLMLYLDIDNFKNINDSLGHNIGDRVLQ 303 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEF-----AAAALGSSEQEAAILANDLRKIIENSQINIS 211 + ++L + +G LGG+EF A + S EQ + N + + + Sbjct: 304 EIGNRLSHLLPKHAIIGHLGGDEFCVLLPQADSEFSGEQLCQNVINQINQPFDLHHF--- 360 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFSDIEN 263 H+ S G+ + + I+ + AD A+Y AK GRNR + F D N Sbjct: 361 ---RKHLACSIGLVQYPGDGNDARILLQNADTAMYEAKHRGRNRFIKFDDAMN 410 >gi|171058506|ref|YP_001790855.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170775951|gb|ACB34090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 1069 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148 S RI L+ D L+ L N + I L +K++++F D+D FK IND+ GH Sbjct: 617 SERRIRFLAEHDVLTELPNRALCIERLRLALQQARRTGQKVAVLFIDLDRFKNINDSLGH 676 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD ++ ++ +LV V RLGG+EF G ++ E + R I Q Sbjct: 677 HVGDGLLRSVAQRLVDGVRAGDTVSRLGGDEFVVVLNGLADIEEVAHVVEQRLIPRVRQP 736 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 + G IH++ S GI+ + I ++ +AD A+Y AK GRN F+ Sbjct: 737 HGVQGAEIHVSCSVGISVFPDDAQDIDELMRQADVAMYQAKAQGRNGAQFFT 788 >gi|114776516|ref|ZP_01451561.1| Hypothetical 918 kDa protein Y4LL [Mariprofundus ferrooxydans PV-1] gi|114553346|gb|EAU55744.1| Hypothetical 918 kDa protein Y4LL [Mariprofundus ferrooxydans PV-1] Length = 702 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 17/168 (10%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL------GSYN-EKLSIVFFDIDYFKQINDNFGHPVG 151 R+S ++ D L+GL N + FI L S N +K+ ++F DID FK +NDN GH VG Sbjct: 526 RLSHMAHHDQLTGLPNRTLFIDRLEHALAHASRNKDKVGLMFIDIDGFKAVNDNHGHDVG 585 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSE--QEAAILANDLRKIIENS 206 D ++ +++ L + V R+GG+EF L + Q A + N + Sbjct: 586 DALLCIIANSLTELVRDADTVARIGGDEFVIILEKLLSDTAIIQVAEKILNRFSVPTLAA 645 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I G SI ITI + + C++ I+ +AD A+Y+AK SG+ + Sbjct: 646 GIACDIGCSIGITIGSDDSSSCNE-----IVKQADTAMYLAKTSGKQQ 688 >gi|330967776|gb|EGH68036.1| diguanylate cyclase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 501 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 10/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIN 143 ++L +S ++ L+ D L+GL N F +L + L ++ DIDYFK+ N Sbjct: 322 QQLILSNRQLELLAMKDALTGLANRRCFDQTLTKEARRAQREGTTLVLLMIDIDYFKRFN 381 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D FGH GD + + + L P V R GGEE + Q A ++A + Sbjct: 382 DTFGHVAGDVCLRAVGEILEDSVKRPSDLVARYGGEEMGIIMPNTDGQGATVVAQLIIDR 441 Query: 203 IENSQINISSGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNR 254 +E I +S P +++S GI A + + I AD+ALY AK GRN+ Sbjct: 442 LERKNIRHNSSPFGRVSVSIGIIAAAGSQLDNLMGFIQGADRALYNAKALGRNQ 495 >gi|220935625|ref|YP_002514524.1| response regulator receiver modulated diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] gi|219996935|gb|ACL73537.1| response regulator receiver modulated diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] Length = 335 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 82/180 (45%), Gaps = 22/180 (12%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145 L + ++ LS D L+GL N A L + + + D+D+FKQIND Sbjct: 161 LAAANRQLEYLSTTDPLTGLPNRRALNKRLEAVLLETQGRGGGMCVGLLDVDHFKQINDT 220 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH VGD+V+ LS +L + V RLGGEEFA + N I + Sbjct: 221 YGHDVGDEVLTTLSKRLRLALRPMDMVARLGGEEFALVMHFHD------VDNCNPGIFQR 274 Query: 206 SQINISSGP----SIHITISAGIAERC--HKEPISTI---IYRADQALYVAKKSGRNRVV 256 +S P I ++A I C H E + TI + AD+ LY AK GRNRVV Sbjct: 275 VLDTVSKDPFPTSEGQIPVTASIGACCYRHGEQMVTIQGMLKIADENLYRAKAEGRNRVV 334 >gi|157375517|ref|YP_001474117.1| GGDEF family protein [Shewanella sediminis HAW-EB3] gi|157317891|gb|ABV36989.1| conserved hypothetical GGDEF family protein [Shewanella sediminis HAW-EB3] Length = 413 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 80/272 (29%), Positives = 119/272 (43%), Gaps = 28/272 (10%) Query: 4 SLKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEY 63 S D +W K L + SP +I I S FI IF A I LF G + Y Sbjct: 144 SATDVNWLWQSFLKPLPTLSPSPLII---ILLSFFIT--IFSALILLFR-GHNSDQAV-Y 196 Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISY-NRISQLSRIDCLSGLLNHSAFISSL 122 I + S++ +S +L+ + L IS N +L+ ID L+ + + + Sbjct: 197 ITLLFTSVMFLSFNQALMPALTASMAAILLLISIINSSHELAFIDQLTEVPGRRSLEIEI 256 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + +I DID+FK ND FGH GD+V+ ++ QL+ + R GGEEF Sbjct: 257 KHLSGLYTIAMIDIDHFKHFNDTFGHRTGDEVLRLVA-QLMNQNKGRGRIFRYGGEEFTI 315 Query: 183 AALGSSEQEAAILANDLRKIIENSQINI---SSGP----------------SIHITISAG 223 G + + N LR + + I +S P S++ITIS G Sbjct: 316 IFKGKNANQCMPYLNSLRTRVAEYDLKIRDHTSRPVMGVGLKAEMEKANNESVNITISIG 375 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +A+ + ++ AD+ALY AK GRNRV Sbjct: 376 VADSVSETIPENVMKAADKALYRAKNGGRNRV 407 >gi|148978358|ref|ZP_01814863.1| hypothetical protein VSWAT3_00893 [Vibrionales bacterium SWAT-3] gi|145962517|gb|EDK27795.1| hypothetical protein VSWAT3_00893 [Vibrionales bacterium SWAT-3] Length = 558 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 12/164 (7%) Query: 107 DCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N F L ++ + LS++ D+D+FK+ NDNFGH GD V+ +S Sbjct: 378 DPLTGLFNRRFFEQKLEEHSMNSATSEQPLSLLMLDLDHFKRFNDNFGHDAGDFVLKEIS 437 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L RLGGEE A + Q+A L + + + + Sbjct: 438 ALLKQSVSEDEIACRLGGEELAVLLPHYTMQQATEFGQTLCDAVRSMHLEHKGLSLGQLG 497 Query: 220 ISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFSD 260 +S G+A + +P S +++ AD ALY+AK GR+RVV + + Sbjct: 498 VSIGVA--TYPKPASDTESLVKMADNALYMAKDMGRSRVVNYDE 539 >gi|158319674|ref|YP_001512181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkaliphilus oremlandii OhILAs] gi|158139873|gb|ABW18185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkaliphilus oremlandii OhILAs] Length = 703 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 23/177 (12%) Query: 98 NRISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N++ ++ D L+GL N + + +K+++++ DID FK IND GH + Sbjct: 268 NKLHTMAYYDTLTGLYNKEMLKEEMEKLLREAETEKKKMALIYLDIDNFKHINDILGHEI 327 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE------QEAAILANDLRKIIE 204 GDK+I ++++ L P V RLGG+EF A LG + QE ++ LR+ Sbjct: 328 GDKMITYIANILSHQVKAPNLVARLGGDEF-AVVLGEIKTIEDVLQEIEKFSSYLRRPWN 386 Query: 205 -NSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N Q I+ S G+A H + ++T++ AD A++ K++GR+ V ++ Sbjct: 387 LNKQ-------EFFISTSIGVALYPDHGKTLATLMQNADTAMFHIKENGRDGVGIYA 436 >gi|91775551|ref|YP_545307.1| diguanylate cyclase [Methylobacillus flagellatus KT] gi|91709538|gb|ABE49466.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT] Length = 394 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 15/164 (9%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 L+ D L+ + N A ++ LG Y +SI D+D+FK IND +GH GDK Sbjct: 222 HLATHDELTKIYNRRALVN-LGRREIDLAHRYKRPISIFMIDLDHFKLINDTYGHDAGDK 280 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ ++ L +GR GGEE ++++EA L L + + N + + Sbjct: 281 VLRSVALTLSNTCRNTDIIGRYGGEELCIVCPHTTKEEATALGERLLEALRN--LRHPAC 338 Query: 214 PSIHITISAGI-AERCHKEPIS---TIIYRADQALYVAKKSGRN 253 + H+T S G+ H + + +++RAD ALY AK +GRN Sbjct: 339 DNRHVTCSIGLYTWNPHIDLAANWEAMLHRADTALYAAKAAGRN 382 >gi|78357561|ref|YP_389010.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219966|gb|ABB39315.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 751 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 9/181 (4%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDI 136 Y++ + R+ + + D L+G+ N A ++ + L+ + DI Sbjct: 567 YVTARDISRQKAHERRLHEQASTDELTGIFNRRRVLDIGKAEMARSRRFGRPLACLMIDI 626 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FKQIND +GH GD V+ ++ L +GRLGGEEF + + A A Sbjct: 627 DHFKQINDTYGHVAGDAVLRGVTATLSAGLRQSDTLGRLGGEEFIVFMPETDAEGAMHTA 686 Query: 197 NDLRKIIENSQINIS-SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNR 254 LR+ +E S + + G S IT+S G+ + + I AD ALY AK++GRNR Sbjct: 687 ERLRQAVEQSSVLMDGEGASPGITVSLGVTVLAPETASLDAFIAAADAALYRAKENGRNR 746 Query: 255 V 255 V Sbjct: 747 V 747 >gi|113970467|ref|YP_734260.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] gi|113885151|gb|ABI39203.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] Length = 752 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 11/163 (6%) Query: 107 DCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +A S S S + D+D FKQ+ND +GH GD ++ + + Sbjct: 318 DSLTGLANRNALFRQIQELISADSLTPGFSFMLMDLDNFKQVNDTYGHDKGDALLVQVVE 377 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL-RKIIENSQINISSGPSIHI 218 ++ RLGG+EFA G +++E + LA + R++ ++++ G ++ Sbjct: 378 EIKTCLNDQAVFSRLGGDEFALLLPGIVTQRELSQLAEKINRQVYRRYELSLDKG--VYS 435 Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++S GIA + ++ ADQA+Y++K +GRNR F++ Sbjct: 436 SVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478 >gi|293395763|ref|ZP_06640045.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291421700|gb|EFE94947.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 378 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 15/202 (7%) Query: 68 NLSLVIISITISLLL---GYISGSILKELFISYN-------RISQLSRIDCLSGLLNHSA 117 N+ VII + ++ +L YI E + Y R+ ++ D L+ N A Sbjct: 174 NMRFVIIWLLLAFILLYGRYILLHWFNENWQRYQDNRLLISRLETMANQDALTETANRRA 233 Query: 118 FISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVG 173 L E+ +++ D+D+FK+ ND++GHP GD+ + ++ L +P V Sbjct: 234 MEHHLAVAAERQRPFALIMIDVDFFKRYNDHYGHPAGDRCLRDIAAILKSSVRSPEDVVA 293 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEP 232 R GGEEF +S A ++A +++ I + + +S +++S G+A + Sbjct: 294 RYGGEEFLLLLFDASLAGATVVAERIQQNIRRQGVPHAASEVGEVVSVSMGLAASSGNKS 353 Query: 233 ISTIIYRADQALYVAKKSGRNR 254 + ++ AD ALY AK+ GR+R Sbjct: 354 DAQLLAEADAALYRAKQGGRDR 375 >gi|289647598|ref|ZP_06478941.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 712 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131 ++++ + S++++L Y ++ + + D L+GLLN ++ ++ L + Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLFQAVEGMLLRKEQTDKYLVV 310 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426 Query: 248 KKSGRNR 254 K++GR + Sbjct: 427 KRAGRQQ 433 >gi|262275053|ref|ZP_06052864.1| diguanylate cyclase [Grimontia hollisae CIP 101886] gi|262221616|gb|EEY72930.1| diguanylate cyclase [Grimontia hollisae CIP 101886] Length = 333 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 20/188 (10%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSI---------------VFF 134 L +++ +Y +I S D L+GL N + + ++ I F Sbjct: 132 LAKIYENYQKIISASERDGLTGLYNRKVLTTKIDLLLDRFLIQGTSIIDDPTHHHWVCIF 191 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FKQIND GH GD+VI ++ + +F + R GG+EF S +E Sbjct: 192 DIDHFKQINDALGHVFGDEVILLVTAMMKKIFHDEDILFRYGGDEFVVIMHPQSREEMEA 251 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS-TIIYRADQALYVAKKSGRN 253 + + G + ++IS G A +E + T++ ADQALY AK++GRN Sbjct: 252 TVCEFIDAVNKR----DYGQAKEVSISMGAAAISDQELNAITVLGFADQALYKAKQNGRN 307 Query: 254 RVVCFSDI 261 +V + D+ Sbjct: 308 QVAFYEDL 315 >gi|241206039|ref|YP_002977135.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859929|gb|ACS57596.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 605 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 24/222 (10%) Query: 51 FYI---GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107 FY+ GL F G E+ + ++ L+ + ++ L+E S RI ++ D Sbjct: 122 FYVDAEGLPSFIGAEWDVTADI-LLNAELARQKVVAEARALALEE---SNARIEHVADHD 177 Query: 108 CLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+GL N L L+++ D+D FKQIND+ GH GD V+ + ++ Sbjct: 178 YLTGLPNRRLLDKRLAELPADKSITTLAVLHLDLDQFKQINDSHGHAAGDAVLRAAALRI 237 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND----LRKIIENSQINISSGPSIH 217 V R+GG+EF + ++ E ++ D LRK I Q + SG SI Sbjct: 238 TAAIPANGVVARVGGDEFVIVLVNFADLTELKLITEDVQRRLRKKIRFGQEMLQSGASIG 297 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ S R ++ +D ALY AKK GRNRV F+ Sbjct: 298 VSWSGDRRAR-------NLLAESDLALYQAKKLGRNRVEFFT 332 >gi|240172640|ref|ZP_04751299.1| cyclic diguanylate phosphodiesterase domain-containing protein [Mycobacterium kansasii ATCC 12478] Length = 1328 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 18/171 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL----GSYNEK---LSIVFFDIDYFKQINDNFGHPVGD 152 ++Q + D L+GL N + F++ L + +++ ++++ D+D FKQ+ND GHP GD Sbjct: 341 VAQEAFRDSLTGLANRTRFLNRLERAIAARDQRPTPIAVLCLDLDNFKQVNDALGHPAGD 400 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-----ILANDLRKIIENSQ 207 +++ ++ L + RLGG+EFA GS E+ A + A D +I+ Sbjct: 401 ELLVRVAGLLTASLDETATIARLGGDEFAVLIEGSVEETQAAAHRVLDAFDAAIVIDGVP 460 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + PSI T++ C + ++ AD A+Y AK+ G R+ F Sbjct: 461 VTVR--PSIGYTVATA-GSSC---TVDELLRHADLAMYAAKREGGERIRSF 505 >gi|170690318|ref|ZP_02881485.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia graminis C4D1M] gi|170144753|gb|EDT12914.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia graminis C4D1M] Length = 553 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 18/177 (10%) Query: 89 ILKELFISYNRISQLSRI---DCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQI 142 + +++ + R++ L R+ D L+GL N SA + +L S + +++F D+D FK + Sbjct: 109 VSEDITVEQERLAALDRLAHTDGLTGLANRSALVRQMKTLCSCDAAFALMFIDLDRFKVL 168 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRK 201 ND GH D+++ +++ + V RLGG+EFA G +++ A LA L Sbjct: 169 NDTLGHTAADRLLKNIAETIQAALPDDACVARLGGDEFAVILNGEADKGRLATLARTLLS 228 Query: 202 IIENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRN 253 + S+ P +T S GI+ R H+ +++ AD A+Y AKK GRN Sbjct: 229 AFSSGVPADSADP--FVTASIGISVYPENGRDHE----SLLTSADIAMYAAKKGGRN 279 >gi|160873423|ref|YP_001552739.1| diguanylate cyclase [Shewanella baltica OS195] gi|160858945|gb|ABX47479.1| diguanylate cyclase [Shewanella baltica OS195] gi|315265652|gb|ADT92505.1| diguanylate cyclase [Shewanella baltica OS678] Length = 389 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150 ++I L+ D L+GL N A L + +++ S++ D+D+FK+IND +GH Sbjct: 222 SKIRMLAERDQLTGLWNRRAMHKFLNNIHQRWLRDNVPYSMILLDLDHFKEINDQYGHDA 281 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + + V + R GGEEF + A +A L ++++++ I Sbjct: 282 GDLALLTAARLFGSVLRENDALCRHGGEEFLVILPATDAPAARAVAEKLHQVLKDNSF-I 340 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G +I I S G A ++ +ADQA+Y AK GR+R+ Sbjct: 341 WQGVTIKIHASLGYATIYQGCQPDKLLIQADQAMYRAKSEGRDRI 385 >gi|108763957|ref|YP_633516.1| response regulator/GGDEF domain-containing protein [Myxococcus xanthus DK 1622] gi|108467837|gb|ABF93022.1| response regulator/GGDEF domain protein [Myxococcus xanthus DK 1622] Length = 320 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 11/172 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDN 145 L + + +LS D L+GL NH F L Y++ LS++ D+DYFK+IND Sbjct: 138 LAAQVSELQRLSSTDGLTGLHNHRHFQERLREEFRRAQRYDDSLSLILLDLDYFKEINDK 197 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 +GH GD V+ ++ L V R GGEEFA + A +A +R+ + Sbjct: 198 YGHSAGDGVLREVAAALTRGVRETDLVARYGGEEFAVLLPRTHLTGALTVAERVRRELRA 257 Query: 206 SQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRV 255 ++ +S S+ +T S G++ H+ ++ ++ AD+ALY AK+ GR+R+ Sbjct: 258 LRLEVSD--SLQVTASLGVSSFPHRTVLTPEQLLLTADEALYQAKRDGRDRI 307 >gi|312793688|ref|YP_004026611.1| diguanylate cyclase with gaf sensor [Caldicellulosiruptor kristjanssonii 177R1B] gi|312875807|ref|ZP_07735797.1| diguanylate cyclase [Caldicellulosiruptor lactoaceticus 6A] gi|311797288|gb|EFR13627.1| diguanylate cyclase [Caldicellulosiruptor lactoaceticus 6A] gi|312180828|gb|ADQ40998.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 557 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 12/172 (6%) Query: 97 YNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 Y ++ ++ +D L+G N +S G Y +SI FD+D FK++ND +GH Sbjct: 382 YQQMRSMAMVDGLTGAFNRIYLYEVLEREIQASAGRY--PVSIALFDVDNFKKLNDTYGH 439 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDKV+ + V R GGEEF EA + +R+ IE+ I Sbjct: 440 LFGDKVLQTIVRIAREKVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRRAIESETI 499 Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +T+S GIA H + + +I AD A+Y AK SG+N V ++ Sbjct: 500 E-DNLIQTRVTVSFGIASYPLHADNVKDLIKCADVAMYRAKSSGKNCTVVYN 550 >gi|329910860|ref|ZP_08275395.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327546065|gb|EGF31137.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 457 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 8/162 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S ++ D L+G+ N F+S + L+++ DID+FKQIND++GH GD Sbjct: 290 LSHMANTDTLAGIANRRHFMSRFEVELKHAQRHGTGLAVLILDIDHFKQINDSYGHATGD 349 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + I + V F+ R GG+EFA +S + A + A LR+ I +I ++ Sbjct: 350 QAILACAHACQAVLRDIDFLSRFGGDEFAILLSDTSVEGAQVAAERLRQEILQCRIAGNA 409 Query: 213 GPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRN 253 G + +T S G+A P + + +AD ALY AK GRN Sbjct: 410 GVQVTMTASIGLAMLDAGTPDVEAALAKADAALYRAKSRGRN 451 >gi|296165035|ref|ZP_06847590.1| diguanylate cyclase/phosphodiesterase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899683|gb|EFG79134.1| diguanylate cyclase/phosphodiesterase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 769 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 107/226 (47%), Gaps = 13/226 (5%) Query: 38 FIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISY 97 F+ + + L G+ P + Y L+L ++ T ++ + + ++L + Sbjct: 294 FMGSTALLTFQVLVGRGIDPLFASTY-----LALALLVATRYVVAMRVQRMLTEQLVAAK 348 Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R++ + D L+GL N L ++F DID FK++ND FGH GD+++ Sbjct: 349 RRLAYQAHHDALTGLPNRLLLAERLDEAIRGGPFVLIFVDIDDFKEVNDRFGHAAGDELL 408 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S +L G + R+GG+EFA G+ + ++A+ LR + S ++ G S Sbjct: 409 CAISARLQECLGQSDTLARIGGDEFAILTAGAVDAP-EMVADQLR-VALRSPFSV-HGTS 465 Query: 216 IHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCF 258 + + S G+ H + T ++ +AD ++Y K+ G++ V + Sbjct: 466 VRVRASMGLVSPGHHDGPPTSDDLLRQADISMYTGKRLGKDTAVVY 511 >gi|217971509|ref|YP_002356260.1| diguanylate cyclase [Shewanella baltica OS223] gi|217496644|gb|ACK44837.1| diguanylate cyclase [Shewanella baltica OS223] Length = 389 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150 ++I L+ D L+GL N A L + +++ S++ D+D+FK+IND +GH Sbjct: 222 SKIRMLAERDQLTGLWNRRAMHKFLNNIHQRWLRDNVPYSMILLDLDHFKEINDQYGHDA 281 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + + V + R GGEEF + A +A L ++++++ I Sbjct: 282 GDLALLTAARLFGSVLRENDALCRHGGEEFLVILPATDAPAARAVAEKLHQVLKDNSF-I 340 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G +I I S G A ++ +ADQA+Y AK GR+R+ Sbjct: 341 WQGVTIKIHASLGYATIYQGCQPDKLLIQADQAMYRAKSEGRDRI 385 >gi|94264442|ref|ZP_01288231.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93455132|gb|EAT05354.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 833 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 7/174 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 E Y+ ++ L D L+ LNH A + ++ +L++ + D+D FK IND GH VG Sbjct: 398 ERIAHYDTLTGLPNRDLLADRLNH-AMVQAI-RRQTRLAVAYLDLDGFKAINDTHGHDVG 455 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ L+ ++ +GRLGG+EF A + E + L++++ + + +S Sbjct: 456 DFLLRTLAGRMQQTLRESDTLGRLGGDEFVAIFQDLPDNETCLPL--LQRLLNAAAMPVS 513 Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIE 262 +I ++ S G+ E I ++ +ADQA+Y AK++G+NR F ++ Sbjct: 514 YQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQAKQTGKNRYHLFDAVQ 567 >gi|90579858|ref|ZP_01235666.1| putative transcriptional regulator [Vibrio angustum S14] gi|90438743|gb|EAS63926.1| putative transcriptional regulator [Vibrio angustum S14] Length = 405 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 7/161 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISS--LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +++ +++ D L+GL N F + + NE L+I DID+FK++ND +GH GD V+ Sbjct: 249 DKLYRMANQDALTGLWNRRYFFTHNCCQTENESLNIAMIDIDFFKKVNDTYGHDGGDAVL 308 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S +++ V R GGEEF G + + L +R+ IE+ I Sbjct: 309 ISIS-KIIDAHFPESIVARFGGEEFCIQHCGHFQSFLSTLEL-IRQRIESITIPYLE-QQ 365 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 I ITIS G E + +I +AD LY AK++GRN++V Sbjct: 366 ISITISIGATTGL--ESLEKLIKQADDNLYTAKENGRNQLV 404 >gi|74317945|ref|YP_315685.1| diguanylate cyclase [Thiobacillus denitrificans ATCC 25259] gi|74057440|gb|AAZ97880.1| Putative diguanylate cyclase (GGDEF domain) [Thiobacillus denitrificans ATCC 25259] Length = 253 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 9/167 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + + +LS D L+GL N F ++L + + ++ DID+FKQIND GH V Sbjct: 48 DELCELSLKDPLTGLGNRRQFRAALERAIEIVARSGDSVLLLLLDIDHFKQINDAHGHLV 107 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ ++ L V R GGEEFA +A +R IE + + Sbjct: 108 GDQVLQAVARALAESIRPMDTVARYGGEEFAMILPNCLPACGHAVAERIRHRIEALSVQV 167 Query: 211 SSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ++ +T S G A + + + + RADQ LY AK GRN V Sbjct: 168 APHTALRVTASIGGAYAPQWVRSTVDLWVERADQQLYRAKADGRNLV 214 >gi|81300191|ref|YP_400399.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC 7942] gi|81169072|gb|ABB57412.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Synechococcus elongatus PCC 7942] Length = 889 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 E L+++F D+D FK INDNFGH VGD+V+ ++ ++ + RL G+EF Sbjct: 496 EMLAVIFIDLDRFKDINDNFGHEVGDRVLVEVAQRIRQSVRQSDLIARLSGDEFVVILPN 555 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALY 245 + Q AA LA L++ I I I SI +T S GI+ + + +I +AD A+Y Sbjct: 556 TDAQGAATLAQKLQQQI-TPPIAIGD-RSIQLTTSLGISLFPVDGDDLEILIKKADTAMY 613 Query: 246 VAKKSGRNRVVCFS 259 K+ GR+ F+ Sbjct: 614 SIKEGGRDAFSFFT 627 >gi|296161827|ref|ZP_06844629.1| diguanylate cyclase [Burkholderia sp. Ch1-1] gi|295887991|gb|EFG67807.1| diguanylate cyclase [Burkholderia sp. Ch1-1] Length = 367 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 81/170 (47%), Gaps = 19/170 (11%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKV---IA 156 D L+GL N +L ++ LS++ DID+FKQIND FGH GD+V +A Sbjct: 201 DALTGLYNRRYLNDALQREFDRSTQTGCPLSVLLLDIDHFKQINDRFGHSTGDRVLQNVA 260 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEF--AAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 L Q + GT R GGEEF +GSSE R + + +N G Sbjct: 261 ALLAQDMDPGGTAF---RYGGEEFLILLPRMGSSEAWGRAECYRTRMPV-SVVVNEERGN 316 Query: 215 SIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +T+S GIA E +I RAD ALY AK GR+R F + E+ Sbjct: 317 P--VTLSIGIASTADGAESPQQLIDRADDALYQAKLGGRDRCSVFKNAED 364 >gi|291619602|ref|YP_003522344.1| YciR [Pantoea ananatis LMG 20103] gi|291154632|gb|ADD79216.1| YciR [Pantoea ananatis LMG 20103] Length = 685 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 13/170 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R + L+ D L+GLLN + L + +E +++ DID FK +ND GH GD ++ Sbjct: 269 RANHLALHDPLTGLLNRRGLMPELETLLDGDEPFAVMVSDIDRFKSVNDVLGHAAGDTLL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQI----NI 210 +S +L+ V + R GG+EF A G SS ++A+ A+ L +++ + + Sbjct: 329 IEVSARLLSVLRPGDILARTGGDEFVAVLPGISSAEDASETASRLTMVLKEPFMLKGRKV 388 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +SG S + + G A +++ AD ALY AK +GR V F+D Sbjct: 389 TSGCSFGVCLFPGYARDAE-----SMLSAADIALYAAKSAGRKGWVIFTD 433 >gi|134295938|ref|YP_001119673.1| diguanylate cyclase [Burkholderia vietnamiensis G4] gi|134139095|gb|ABO54838.1| diguanylate cyclase [Burkholderia vietnamiensis G4] Length = 466 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 9/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFK 140 S L+EL + ++ ++ D ++G N FI+ + ++ ++ D+D FK Sbjct: 289 SALQELRRTNQKLEYMAATDPMTGASNRRQFIAQVEREIQRAERDGTPFCLLALDLDNFK 348 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IN +GH +GD+V+ + Q + + R+GGEEF A + A + A +R Sbjct: 349 NINGAYGHQIGDEVLRGVVRQCLEAIRPTGALARVGGEEFMALLPDMPLEGARMTAERVR 408 Query: 201 KIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I +S + + +T+S G+A+ + ++ D+ LY AK+ GRNRVV Sbjct: 409 SSIASSPFGLDF-KRVQVTVSVGVAQYGVDGSTVDALLRVVDERLYQAKRDGRNRVVA 465 >gi|104784028|ref|YP_610526.1| diguanylate cyclase [Pseudomonas entomophila L48] gi|95113015|emb|CAK17743.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas entomophila L48] Length = 400 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 23/180 (12%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 Q++ D L+GL A + I D+D+FK+ ND GH VGD+V+ ++ + Sbjct: 213 QMAFRDELTGLPGRRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASR 272 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---SSGP---- 214 L V R GGEEFA G + +E +R++I N I + +S P Sbjct: 273 LSKV-TGGGRAYRYGGEEFALVFAGKTAEECLPHLEAVREMIANYAIQLRDQNSRPNDDS 331 Query: 215 ------------SIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++ +TIS G+AER H+ P ++ ADQALY AK +GRN V+ F Sbjct: 332 AGRQRRGGGASSTVSVTISIGVAERQADHRNP-DEVLKSADQALYSAKGAGRNCVMTFGQ 390 >gi|84393367|ref|ZP_00992126.1| putative GGDEF family protein [Vibrio splendidus 12B01] gi|84375976|gb|EAP92865.1| putative GGDEF family protein [Vibrio splendidus 12B01] Length = 488 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 24/208 (11%) Query: 61 LEYILVENLSLVIISITISL----LLGYISGSILKELFISYNRISQLSRIDCLSGLLNH- 115 +E+ LV +I++I + L + Y++ +I + F +L+ D ++GLLN Sbjct: 292 VEHFLVYEKDSLIVAIIVYLFSVTIFFYVNSNIERGYF------KELAAKDPMTGLLNRR 345 Query: 116 --SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 AF S+ +++ ++ FDID FK IND GH GD VI ++S Q+ + Sbjct: 346 GLEAFWRSV-EHDQLFALTVFDIDDFKSINDTHGHDKGDDVIRYMSRQISNSVRSSDVAA 404 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRK--IIENSQINISSGPSIHITISAG---IAERC 228 R GGEEF G ++E I + K + NS + +G T+S G + Sbjct: 405 RFGGEEFVVYMKG-DDRETLIRTLERVKNAVCANSADIVPNG----FTVSGGVCIVETEQ 459 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256 +K I AD+ LYVAK +G++R+V Sbjct: 460 NKLNFEEIFKYADEKLYVAKTTGKDRIV 487 >gi|300867789|ref|ZP_07112432.1| GGDEF domain protein [Oscillatoria sp. PCC 6506] gi|300334206|emb|CBN57604.1| GGDEF domain protein [Oscillatoria sp. PCC 6506] Length = 359 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 23/214 (10%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS-- 120 Y L++ L+I I L + +EL Y ++ + + +D L+ + N F Sbjct: 143 YRLLDVHELLIAQSQIHALATQLLNQAYQELDEVYKQLQRQACLDGLTQVANRRRFDEYL 202 Query: 121 -----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGR 174 + L+++ D+DYFK ND +GH GD + ++ + +P V R Sbjct: 203 RQEWLQMARVRSPLALIMADVDYFKLYNDTYGHQQGDDCLKAVALAITQATRSPSDLVAR 262 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-ITISAGIAER------ 227 GGEEFA + A ++ D+R ++ I P+ +++S G+A Sbjct: 263 YGGEEFAIVLPNTDASAALLVGEDIRSRLKAMAIAHQGSPACECVSLSLGVACTVPDDEN 322 Query: 228 -----CHKEPISTIIYRADQALYVAKKSGRNRVV 256 C E +I AD ALY AKK GR+RVV Sbjct: 323 GGSYLCSPE---KLIAAADCALYQAKKQGRDRVV 353 >gi|293603494|ref|ZP_06685917.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553] gi|292818105|gb|EFF77163.1| diguanylate cyclase [Achromobacter piechaudii ATCC 43553] Length = 558 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 18/175 (10%) Query: 97 YNRISQLSR---IDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +++I L R D L+GLLN ++ L + ++++ DID+FK IND +GH Sbjct: 378 HHKIRDLRRESTTDTLTGLLNRRGLDEAMALLQAAESPVALLAIDIDHFKTINDRYGHSA 437 Query: 151 GDKVIAFLSDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GD+ + L+ VV VG R GGEEF G+S + AA A LR+ + Sbjct: 438 GDRALQALA----VVMSDGSRVGDTLARAGGEEFVVLMPGASLRSAAAAAERLRQRVAAR 493 Query: 207 QINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S + ITIS G+A H ++ + RADQALY AK GRN VC +D Sbjct: 494 LPTESV--RVGITISVGVARYPEHGATLAAVYRRADQALYHAKNHGRN-AVCIAD 545 >gi|206901454|ref|YP_002251456.1| ggdef domain [Dictyoglomus thermophilum H-6-12] gi|206740557|gb|ACI19615.1| ggdef domain [Dictyoglomus thermophilum H-6-12] Length = 1073 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 82/183 (44%), Gaps = 12/183 (6%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLS 130 + + YIS +I L + +L+ ID L+G+LN A + YN LS Sbjct: 688 LKTIANYISIAIENALL--FEETKKLATIDPLTGILNRRALEEAFNKDVERAKRYNRPLS 745 Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + D+D FK ND +GH GD+V+ L+ L VGR GG+EF ++ Q Sbjct: 746 AMVIDVDDFKLFNDTYGHLFGDQVLKELAKTLRNSCRKTDIVGRYGGDEFCIILPETNLQ 805 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAK 248 A A L K I N + I I +S G+A EP ++ AD +Y AK Sbjct: 806 GATKFAERLLKNIRNLTVVTPDNNKIPIKVSIGVASYPDDTYEP-EKLLTLADTTMYKAK 864 Query: 249 KSG 251 SG Sbjct: 865 TSG 867 >gi|157373981|ref|YP_001472581.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] gi|157316355|gb|ABV35453.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] Length = 817 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 3/135 (2%) Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 +L+IVF D+D FKQIND+FGH +GD+++ L+++L G + R+GG+EF G Sbjct: 424 QLAIVFIDVDLFKQINDSFGHLMGDEILVELANRLTAQKGAEDTLARIGGDEFVVLFPGG 483 Query: 188 SEQEAAILA-NDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALY 245 E LA + LR+ E ++ + +T S G++ H + T++ AD A + Sbjct: 484 GGSEELTLALSKLREAFEQP-FSVGENDQVRLTASMGVSVYPHDGKDGYTLLRNADAAKH 542 Query: 246 VAKKSGRNRVVCFSD 260 AK+ RN +++ Sbjct: 543 RAKQDSRNSYAFYTE 557 >gi|152994439|ref|YP_001339274.1| hypothetical protein Mmwyl1_0401 [Marinomonas sp. MWYL1] gi|150835363|gb|ABR69339.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 296 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 4/154 (2%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 +R L+ + + +A + G N ++V FD+D+FKQ+ND +GH GD V+ ++ Sbjct: 141 TRDGMLAEISDQNALVQR-GQQN--CALVMFDLDHFKQVNDTYGHIAGDLVLVSTVQRIK 197 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIHITISA 222 + + R GGEEF ++ +A ++A +R+ I I +S S+ +T S Sbjct: 198 TLLRPYDRIYRYGGEEFIICMPRTTLAQAHMVAERMREAIAEQNIQFDNSRESLRVTASF 257 Query: 223 GIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ + I D+A+Y AK++GRNRVV Sbjct: 258 GVTILTQLRSVEESIDYVDKAMYEAKRAGRNRVV 291 >gi|37676596|ref|NP_936992.1| hypothetical protein VVA0936 [Vibrio vulnificus YJ016] gi|37201139|dbj|BAC96962.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 341 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 10/135 (7%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGS 187 +S++ FDID+FK+ ND FGH GD+ + +++ + + + R+GGEEFA + Sbjct: 199 ISMIIFDIDHFKKYNDTFGHQQGDECLRMIAEAIRSMKLRCLDKIARIGGEEFAVILPET 258 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEP-IST----IIYRAD 241 + A +AN +R IE I S ++ ++T S G+ C P I T ++ +AD Sbjct: 259 EMEGAKHVANRIRTTIEELSITHSHHATLPYVTASLGV---CSIVPEIDTNPRLLLKKAD 315 Query: 242 QALYVAKKSGRNRVV 256 +ALY AK++GRNR+ Sbjct: 316 EALYRAKRTGRNRIA 330 >gi|124265895|ref|YP_001019899.1| diguanylate cyclase [Methylibium petroleiphilum PM1] gi|124258670|gb|ABM93664.1| diguanylate cyclase [Methylibium petroleiphilum PM1] Length = 361 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 120/290 (41%), Gaps = 54/290 (18%) Query: 9 LSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN 68 L WL H L P ++ + + N+F ++G T +GL +L E Sbjct: 79 LDDWLPHRDALAGGEP---LLALPTSRPGPRGRPVLL-NVFPLWVG-TERFGLVEVLAEK 133 Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQL--SRIDCLSGLLNHSAFISSLGS-- 124 + L ++ ++LK I N++ L S D L+GLLN F G Sbjct: 134 -------PLDAEQLRFVD-AVLK---IYRNQVGLLDYSERDTLTGLLNRKTFDEQFGKCL 182 Query: 125 -----------------------YNEKLSIVFF----DIDYFKQINDNFGHPVGDKVIAF 157 + S+ ++ D+D+FK++NDNFGH +GD+V+ Sbjct: 183 LECDGPGPLAPLSPSADGGQQPERRARASLRYWIGVVDVDHFKRVNDNFGHLIGDEVLLL 242 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI- 216 ++ L F + R GGEEF S AA+ R +E + P + Sbjct: 243 MARILRGAFRHGDRLYRFGGEEFVVMLHADSRVHAALAFERFRARMETCRF-----PQVG 297 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD-IENNT 265 +T+S G+ E + S RAD A+Y AK++GRN++ C +E T Sbjct: 298 SVTVSIGMTELRADDTPSAAFSRADLAVYHAKQNGRNQLQCHDQLVEGGT 347 >gi|312195498|ref|YP_004015559.1| serine/threonine protein kinase [Frankia sp. EuI1c] gi|311226834|gb|ADP79689.1| serine/threonine protein kinase [Frankia sp. EuI1c] Length = 1681 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 94/207 (45%), Gaps = 18/207 (8%) Query: 66 VENLSLVIISITISLLLGYISGSI-------LKELFISYNRISQLSRIDCLSGLLNHSAF 118 +E + L+ +T+SL + S+ ++L + R+ QLS D L+GL N Sbjct: 1471 LEGIMLIAAQLTVSLDNALVYASLERKVTERTRQLAAANQRLEQLSVTDPLTGLANRRRL 1530 Query: 119 ISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 L S + L + D+D+FK ND FGH GD+ + ++ L Sbjct: 1531 EDVLDSEWGRSAQRHTPLGLAMIDVDHFKGYNDRFGHTAGDRCLQRVAACLRANVRDTEL 1590 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQINISSGPSIHITISAGIAERCHK 230 R GGEEFA S A LA L + E ++ + S+ +I +T+S G A Sbjct: 1591 AARYGGEEFAIVMPNSDRDTATRLAGRLCHAVAELAEPHPSAQKAI-VTVSVGAASVLPG 1649 Query: 231 E--PISTIIYRADQALYVAKKSGRNRV 255 ++ +I AD ALY AK+ GR RV Sbjct: 1650 PDGSVAKLIDLADAALYQAKRDGRGRV 1676 >gi|299068767|emb|CBJ40007.1| putative modulator of Rnase II stability, signal transduction protein eal-ggdef domains (gmr) [Ralstonia solanacearum CMR15] Length = 625 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 21/183 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFIS------SLGSYNE-KLSIVFFDIDYFKQINDNFGH 148 + RI L+ D L+GLLN A +L N ++S++F D+D FK +ND GH Sbjct: 179 AQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRNRSRVSVMFLDLDRFKNVNDTLGH 238 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-----ALGSSEQEAAILANDLRKII 203 GD+++ ++ +L V RLGG+EF +G+ ILA I Sbjct: 239 QFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESLDGVGTRRVAERILA----AIG 294 Query: 204 ENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF-SDI 261 I+ G + + +S GIA H + T++ +AD A+Y+AK+ GRN F SD+ Sbjct: 295 APFHID---GQELFLGVSIGIAVAPHDGDDPHTLLRKADAAMYLAKERGRNNFQTFTSDL 351 Query: 262 ENN 264 ++ Sbjct: 352 DDR 354 >gi|229056403|ref|ZP_04195816.1| Sensory box/GGDEF [Bacillus cereus AH603] gi|228720877|gb|EEL72426.1| Sensory box/GGDEF [Bacillus cereus AH603] Length = 569 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-NEKLS--IVFFDIDYFKQINDNFG 147 + L +S +R +L+ D L+ L N I+++ EK+ +++FD+D FK +ND G Sbjct: 135 QRLRLSESRYRELAYHDGLTSLPNRLQLITTVNKMIAEKIEFGMIYFDLDRFKLVNDTLG 194 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD +++ ++ +L V G + RLGG+EF + E LA + + Sbjct: 195 HMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKTHTHDEMRQLATSVLSCFQAP- 253 Query: 208 INISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + + T++ +D A+Y AK+ GRN F+D Sbjct: 254 -FMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|190894463|ref|YP_001984756.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190700124|gb|ACE94206.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 648 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 12/164 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFKQINDNFGHPVGDKV 154 +LS D L+G+ N A L +E V F D+D+FK+ ND +GH GD+ Sbjct: 225 ELSNTDYLTGISNRRALDRRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRC 284 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + +++ L VV + +GR GGEEF + A LA +R +E I Sbjct: 285 LTVVANVLKAVVESSGGMIGRYGGEEFIVVMPAETPSIAMSLAEKIRMEVEFLAIAHDER 344 Query: 214 P--SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 P S +T+S G+A E + I+ AD ALY AK SGRN Sbjct: 345 PDDSPIVTVSIGVAFTREDVGEKVERIVREADLALYNAKASGRN 388 >gi|75906861|ref|YP_321157.1| diguanylate cyclase [Anabaena variabilis ATCC 29413] gi|75700586|gb|ABA20262.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC and Chase2 sensors [Anabaena variabilis ATCC 29413] Length = 737 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 15/174 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIND 144 EL + + + L+ D L+GL N F L N L ++F D+D FKQ+ND Sbjct: 557 ELKLKEDHLRYLAYHDALTGLPNRKYFAEQLYESINWAKDNNFSLGLLFIDLDGFKQVND 616 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKI 202 + GH +GD+++ ++ +L V RLGG+EF A+ + + A + L I Sbjct: 617 SLGHEMGDRLLVVIAQRLSNSLRASDTVARLGGDEFTVILQAIPNVQVAAKVAEKILANI 676 Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 E +N G + +++S GI+ +P T++ +AD A+Y AK G+NR Sbjct: 677 TEPIVLN---GCTTKVSVSIGISIYPETSLDP-DTLLKKADAAMYRAKHLGKNR 726 >gi|182625599|ref|ZP_02953369.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens D str. JGS1721] gi|177909151|gb|EDT71622.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens D str. JGS1721] Length = 624 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 KE+ I +R++ D L+ + N F S ++K +++F D+D+FK+IN Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198 DN+GH VGD+V+ ++ +GR+GG+EFAA S++E + N Sbjct: 239 DNYGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 LRK I+ + + SI ITI E+ I ++ +D+A+Y K Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343 >gi|117618806|ref|YP_855696.1| GGDEF domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560213|gb|ABK37161.1| GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 539 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 24/184 (13%) Query: 89 ILKELFISYNRISQLSR----IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137 ++KE Y + + + +D L+ + N +A L YN L + DID Sbjct: 360 LMKEETAEYKKRLTIQKHKLFLDSLTQVHNRAALDERLELEYKRWLRYNTPLCLAIIDID 419 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK INDN+GH GDK + ++ L F+ R GGEEF I + Sbjct: 420 HFKHINDNYGHMAGDKALKVVAKALQGALRDTDFIARFGGEEFVVLL-------PNINPD 472 Query: 198 DLRKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 +K +E + I S P + ITIS G + + RAD+ALY +K SG Sbjct: 473 KFQKPLETLRQTIKSIPFRFRDARVEITISIGATLFREGDHTTDAFERADKALYSSKNSG 532 Query: 252 RNRV 255 R++V Sbjct: 533 RDQV 536 >gi|33591567|ref|NP_879211.1| hypothetical protein BP0338 [Bordetella pertussis Tohama I] gi|33571209|emb|CAE40715.1| putative membrane protein [Bordetella pertussis Tohama I] gi|332380967|gb|AEE65814.1| hypothetical protein BPTD_0333 [Bordetella pertussis CS] Length = 380 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 28/226 (12%) Query: 49 FLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRI-------- 100 + + L P L + E+ SL I+S+ + L L ++ + + +NR+ Sbjct: 158 LMICVSLGPCTTLPWFTGEH-SLWIVSVQLPLYLASMTVAAYR-----FNRMLVATMQAE 211 Query: 101 ---SQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 +L+R D L+GL+N A ++ NE ++++ D+D FK +ND GH Sbjct: 212 RDSDRLARCDALTGLMNRFGLGFALERAVAATRRDGNE-FALLYLDLDGFKSVNDTHGHA 270 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIENSQI 208 GD+++ ++ +L + + R+GG+EF E A L + + +I E + Sbjct: 271 AGDRLLRDVAARLTELAPADAAIARIGGDEFVLLVRDCDEACATALGDRIVARICELYDL 330 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I ++ + R H + ++ I+ AD+ALY+AK +G++R Sbjct: 331 GTPRPVRIGGSVGIALVPR-HGQEMTAILKAADRALYLAKSAGKSR 375 >gi|319781884|ref|YP_004141360.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167772|gb|ADV11310.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 668 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 20/168 (11%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDK- 153 +LSR D L+GL N A L Y + D+D+FK+ ND +GH GD+ Sbjct: 231 RLSRTDPLTGLENRRAIDEKLRDYWNDWQKVGTSFGAILIDVDFFKKFNDCYGHQEGDRC 290 Query: 154 ---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN- 209 V LSD + G+ +GR GGEEF A +++ +A + +EN + Sbjct: 291 LIHVANALSDMIKQYNGS---IGRYGGEEFIVLARMEKKEQILDIAEAICSTVENLALTH 347 Query: 210 --ISSGPSIHITISAGIA-ERCHK-EPISTIIYRADQALYVAKKSGRN 253 G SI +T+S G A R + II+ AD+ALY+AK GRN Sbjct: 348 ELRRDGVSI-VTVSVGAAFTRTQTGAKLEKIIHEADRALYLAKAGGRN 394 >gi|152964994|ref|YP_001360778.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans SRS30216] gi|151359511|gb|ABS02514.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans SRS30216] Length = 770 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 21/177 (11%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFI--------SSLGSYNEKLSIVFFDIDYFKQINDNFG 147 S+ R+S + D L+GL + F+ +S+ + + S++ D+D FKQ+ND G Sbjct: 327 SHARLSHRASHDELTGLPTRALFLERTIDAVDASVATGTGRASVLNIDLDDFKQVNDRHG 386 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDL-RKII 203 H GD+++ + ++V V G V R GG+EFA AAL E A LA L +++ Sbjct: 387 HAGGDELLVEIGARMVQVCGPGSVVARFGGDEFAVLLPAALPLPEVHA--LAQALCARLV 444 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCF 258 E ++ + +T+ A I + P++ ++ AD A+Y AK G+NRV F Sbjct: 445 EPVHLSTAV-----VTVGASIGVASWQPPLTAHDLVRCADIAMYSAKARGKNRVEVF 496 >gi|330988900|gb|EGH87003.1| hypothetical protein PLA107_28003 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 397 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 21/210 (10%) Query: 68 NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNHSAFIS 120 N L + ++ + L+ Y S + LF R+ Q+ +R D L+ L N Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250 Query: 121 SLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 + S E+ ++I+ DID+FK NDN+GHP GD + L ++ V Sbjct: 251 VMTSVWERARKTPANVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENGAVA 310 Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232 R GGEE G + Q + + + G S +T+S G+A C P Sbjct: 311 FRFGGEEVLVLMNGDAGQAREMADALQAAVAALKLPHPVLGESAFVTVSLGVA--CATAP 368 Query: 233 IST---IIYRADQALYVAKKSGRNRVVCFS 259 +T +I AD ALY AK++GRN VCF+ Sbjct: 369 QTTADHLISAADNALYAAKRAGRN-CVCFA 397 >gi|331006667|ref|ZP_08329947.1| GGDEF domain containing protein [gamma proteobacterium IMCC1989] gi|330419520|gb|EGG93906.1| GGDEF domain containing protein [gamma proteobacterium IMCC1989] Length = 705 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 16/166 (9%) Query: 107 DCLSGLLN----HSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + + +G Y E L I+F D+D FKQ+ND+ GH +GDK++ + Sbjct: 242 DLLTGLYNRQNLYDYLYTQIGEYVEDKGNLFILFVDLDGFKQVNDSMGHAIGDKILYECA 301 Query: 160 DQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS-GPSIH 217 +L + ++ RLGG+EF +++ + N KII + ISS G ++ Sbjct: 302 MRLESTAKSQGAYIARLGGDEFVLCFYDENKESYHDVCN---KIINSFDEKISSQGINVK 358 Query: 218 ITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + S G+ + EP T+++ AD AL AK SG+N CF D Sbjct: 359 LACSIGVTLYPDDQSTEP-KTLLHNADNALCKAKSSGKNTYYCFDD 403 >gi|298530005|ref|ZP_07017407.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] gi|298509379|gb|EFI33283.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] Length = 310 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 12/175 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDN 145 L I + + +LS D L+ + N F +L + LS + DID FK NDN Sbjct: 129 LKIKTDMLEKLSMQDGLTEIPNRRFFEENLAREWSRCMRNGLPLSQLIMDIDNFKPYNDN 188 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD + +++ + P R GGEEF + A +A +LR ++ Sbjct: 189 YGHGAGDDCLKKVANVIKNTLSRPTDLAARYGGEEFVVLLPETHAAGAVHVAEELRAAVQ 248 Query: 205 NSQINISSGPSIH-ITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255 I P+ +TIS G + + P+ ++ AD+ALY AK+SGRNRV Sbjct: 249 GLGITHEHSPTASVVTISVGTSTHSAESPMKNKEQLLQLADEALYQAKESGRNRV 303 >gi|110799120|ref|YP_695252.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens ATCC 13124] gi|168209235|ref|ZP_02634860.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens B str. ATCC 3626] gi|110673767|gb|ABG82754.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens ATCC 13124] gi|170712630|gb|EDT24812.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens B str. ATCC 3626] Length = 624 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 KE+ I +R++ D L+ + N F S ++K +++F D+D+FK+IN Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198 DN+GH VGD+V+ ++ +GR+GG+EFAA S++E + N Sbjct: 239 DNYGHDVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 LRK I+ + + SI ITI E+ I ++ +D+A+Y K Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343 >gi|13472974|ref|NP_104541.1| hypothetical protein mll3440 [Mesorhizobium loti MAFF303099] gi|14023722|dbj|BAB50327.1| mll3440 [Mesorhizobium loti MAFF303099] Length = 426 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 12/168 (7%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q S D +GL N S + + + L+++ D+D+FKQ ND FGH GD Sbjct: 242 LRQQSIRDPNTGLYNRRYLEETSSRELRRMERSGQPLAMIMLDVDHFKQFNDTFGHEAGD 301 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ ++ L+ V R GGEEFA G+S +AA A LRK I+ Q++++ Sbjct: 302 LVLKQVAATLLDHARESDVVSRYGGEEFALMMPGTSLADAAERAEALRKAIK--QLHLTH 359 Query: 213 GPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVC 257 TI+A E ++ I+ AD++LY AK GR+RVV Sbjct: 360 RGRTLGTITASFGVSAFPELGASWVEIVNAADRSLYQAKADGRDRVVA 407 >gi|89092959|ref|ZP_01165910.1| PAS sensor diguanylate cyclase/phosphodiesterase [Oceanospirillum sp. MED92] gi|89082609|gb|EAR61830.1| PAS sensor diguanylate cyclase/phosphodiesterase [Oceanospirillum sp. MED92] Length = 948 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 25/190 (13%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYF 139 G L E + R+ ++ D L+ L N F ++ Y EK L+I+F D+D F Sbjct: 500 GLDLTERMHAEKRLVWMANHDPLTALPNRLLFTEKVDEAIKRYQEKNGILAILFCDLDSF 559 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K +ND+ GHPVGD+++ ++++ + + RLGG+EF G + ++ Sbjct: 560 KDVNDSLGHPVGDELLQQAAERIQNIICNDGVLARLGGDEFTVLLEGRA---------NI 610 Query: 200 RKIIENSQINISS--------GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKS 250 R+I +Q I + G I TIS GI+ H + ++++I AD A++ AK+S Sbjct: 611 REIENVAQHIIRAFRQSFFIDGYEIFSTISIGISLHPDHGDNVTSLIQHADVAMFDAKES 670 Query: 251 GRNRVVCFSD 260 G+N++ + D Sbjct: 671 GKNQLRFYHD 680 >gi|186682679|ref|YP_001865875.1| response regulator receiver modulated diguanylate cyclase [Nostoc punctiforme PCC 73102] gi|186465131|gb|ACC80932.1| response regulator receiver modulated diguanylate cyclase [Nostoc punctiforme PCC 73102] Length = 322 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 26/191 (13%) Query: 85 ISGSILKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDI 136 I S L++ + N + +L+ ID L+ + N F L ++L S++ D+ Sbjct: 127 IEQSQLQQKLEAVNLELQRLATIDGLTQIANRRRFEEYLNQEWQRLKRDKRPLSLILCDV 186 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAI- 194 D+FK ND +GH VGD+ + ++ + + P V R GGEEF A L +++ E A Sbjct: 187 DFFKLYNDTYGHRVGDRCLQEIAKAIKDIIKRPGDLVARYGGEEF-AVILPNTDTEGATH 245 Query: 195 ----LANDLRKII---ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALY 245 + + +RK+ ENS++ S ++TISAG + + +I AD+ALY Sbjct: 246 VAKKICHTVRKLAIPHENSEV------SPYVTISAGFTTEIPQSDSDLEEMIAAADRALY 299 Query: 246 VAKKSGRNRVV 256 AK +GR+R V Sbjct: 300 QAKAAGRDRFV 310 >gi|312959064|ref|ZP_07773583.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas fluorescens WH6] gi|311286834|gb|EFQ65396.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas fluorescens WH6] Length = 497 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 14/168 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S+L+ D L+GL N L E L+++ D+D+FK ND GH GD Sbjct: 328 LSELAATDALTGLANRRILDERLRLEWDRAQRSTEPLTLLMIDVDHFKAFNDRHGHQGGD 387 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + + ++ + P R GGEEFA + + A ++A +R +E ++ Sbjct: 388 EALRTVAQVIGSNIRRPADLAARYGGEEFAVVLPHTDTKGALVIAEHIRSSVE--RLPRV 445 Query: 212 SGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256 +G IT+S G++ HK + ++ ADQALY AK++GRNR+V Sbjct: 446 AGDERPITVSIGLST-WHKRSRLSLEALLLSADQALYEAKRAGRNRIV 492 >gi|304411758|ref|ZP_07393370.1| diguanylate cyclase [Shewanella baltica OS183] gi|307306190|ref|ZP_07585935.1| diguanylate cyclase [Shewanella baltica BA175] gi|304349946|gb|EFM14352.1| diguanylate cyclase [Shewanella baltica OS183] gi|306911063|gb|EFN41490.1| diguanylate cyclase [Shewanella baltica BA175] Length = 389 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150 ++I L+ D L+GL N A L + +++ S++ D+D+FK+IND +GH Sbjct: 222 SKIRMLAERDQLTGLWNRRAMHKFLNNIHQRWLRDNVPYSMILLDLDHFKEINDQYGHDA 281 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + + V + R GGEEF + A +A L ++++++ I Sbjct: 282 GDLALLTAARLFGSVLRENDALCRHGGEEFLVILPATDAPAARAVAEKLHQVLKDNSF-I 340 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G +I I S G A ++ +ADQA+Y AK GR+R+ Sbjct: 341 WQGVTIKIHASLGYATIYQGCQPDKLLIQADQAMYRAKSEGRDRI 385 >gi|261253257|ref|ZP_05945830.1| GGDEF family protein [Vibrio orientalis CIP 102891] gi|260936648|gb|EEX92637.1| GGDEF family protein [Vibrio orientalis CIP 102891] Length = 469 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 17/204 (8%) Query: 65 LVENLSLVIISIT-----ISLLLGYISGSILKEL----FISYNRISQLSRI---DCLSGL 112 + EN LV+ I I++LL YI ++++ + R +L + D L+GL Sbjct: 262 VTENERLVLTWIALAGCVIAVLLSYIVWLLVRDKEHLGLLLDERTEELQFMVDHDSLTGL 321 Query: 113 LNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 N AF +S + + S++ FDID FK IND FGH GD+++ F+++ + Sbjct: 322 YNRRAFNRFLSDMVEREQTFSLIAFDIDKFKSINDYFGHVAGDEMLVFVTNTVQAQLDES 381 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 R+GG+EF + + N++ +++ +S + S I T+S G A R Sbjct: 382 DIFVRMGGDEFCILSPKIDRDDLFAYLNNICRVVASS-VYESDHHKIRCTLSVGAAVRM- 439 Query: 230 KEPISTIIYRADQALYVAKKSGRN 253 E I+ AD LY +K++GRN Sbjct: 440 LESEEEILKAADAQLYKSKQAGRN 463 >gi|319786946|ref|YP_004146421.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Pseudoxanthomonas suwonensis 11-1] gi|317465458|gb|ADV27190.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Pseudoxanthomonas suwonensis 11-1] Length = 975 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 22/178 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKLS----------IVFFDIDYFKQINDNFGH 148 R++ + D L+GL N S + SL S E+ S ++F D+D FK +ND+ GH Sbjct: 551 RLTHQALHDALTGLPNRSCLLDSLASALERASDMAGDVPGFAVLFLDLDRFKVVNDSIGH 610 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQ 207 GD ++ ++ +LV G V RLGG+EFA A+ LA L +I Q Sbjct: 611 AAGDDLLVAVARRLVSAVGNDAVVARLGGDEFAVLASCKDGIDGVHELARHLLSVI--GQ 668 Query: 208 INISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +G + + S GIA R +E ++ AD A+Y AK GR+R F + Sbjct: 669 PLWVAGRELFPSASMGIALWHPRYRSGEE----LLRDADAAMYRAKNEGRDRFAVFDE 722 >gi|295678208|ref|YP_003606732.1| response regulator receiver modulated diguanylate cyclase [Burkholderia sp. CCGE1002] gi|295438051|gb|ADG17221.1| response regulator receiver modulated diguanylate cyclase [Burkholderia sp. CCGE1002] Length = 371 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 10/176 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 ++L + + +L+ D L+GL N L N L ++ D+D FK N Sbjct: 193 QQLLATNLELQRLTHSDGLTGLSNRRYLDQHLADEWRRGTRDNTGLGLLMIDVDNFKAYN 252 Query: 144 DNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD+V+ ++ + + +P R GGEEFA G+S +LA +R Sbjct: 253 DTYGHVAGDEVLKSVAHTIEACLRHSPDLAARFGGEEFAVVVPGTSAGGLRLLAEKIRIA 312 Query: 203 IENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +E+ I + +TIS G A EP+ T+I A LY AK G+N V Sbjct: 313 VEDLAITHAGSAEGVVTISIGAALMVPSAAEPVPTLIEAASVGLYRAKHDGKNHVA 368 >gi|254557588|ref|YP_003064005.1| diguanylate cyclase/phosphodiesterase domain-containing protein [Lactobacillus plantarum JDM1] gi|254046515|gb|ACT63308.1| diguanylate cyclase/phosphodiesterase domain-containing protein [Lactobacillus plantarum JDM1] Length = 378 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 12/162 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N +A+ ++S +L+++ FDID+FKQ+ND +GH GDK++ ++ Sbjct: 217 DALTKIENFAAYKTAINYQVTSSRKNGSQLTMLMFDIDHFKQVNDTYGHLAGDKILQHVA 276 Query: 160 DQLVVVF--GTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +VF P + R GGEEF EA +A L I + + ++ I Sbjct: 277 QVATIVFHANNPQISLYRTGGEEFNVIFPNYDLTEALAVAEQLFAAINHIAVPVND-HQI 335 Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVC 257 ++IS G++E + T Y R D LY +KK GR ++ Sbjct: 336 QLSISVGLSELAADDQSPTAFYQRVDANLYHSKKHGRMQITA 377 >gi|226310278|ref|YP_002770172.1| hypothetical protein BBR47_06910 [Brevibacillus brevis NBRC 100599] gi|226093226|dbj|BAH41668.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 306 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 14/186 (7%) Query: 88 SILKELFISYNRISQLSRI---DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137 SI +++ N SQL+ + D L+GL N L S E ++ ++ D D Sbjct: 123 SITRDVTERTNLESQLAYMAYHDVLTGLPNRRLLSEKLQQALRAAQSKEEMVAALYLDCD 182 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILA 196 FK+IND +GH GD + L+ +L V RLGG+EF G SE++ +A Sbjct: 183 RFKEINDTWGHDTGDLFLQMLATRLKSSVRDGDIVARLGGDEFVIVLTGIHSERQVEKIA 242 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 N R ++ + + +I + S GIA ++ AD+ALY AKK+GRNR Sbjct: 243 N--RILLATQEPWMIEDRTIPFSTSIGIALYPASASEAEQLLSNADKALYQAKKTGRNRF 300 Query: 256 VCFSDI 261 F I Sbjct: 301 FFFDPI 306 >gi|315179806|gb|ADT86720.1| GGDEF family protein [Vibrio furnissii NCTC 11218] Length = 486 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 103 LSRIDCLSGLLNHSAFIS--SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+ D ++GLLN + ++ LS+ DID FK IND +GH VGD VI ++ D Sbjct: 331 LASRDPMTGLLNRRGMEEFLQVKQHSRYLSVAVLDIDNFKSINDTYGHDVGDDVICYVGD 390 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHIT 219 Q+ V R GGEEF Q A++ I +S + +G T Sbjct: 391 QIECNIRETDAVARFGGEEFVVYLTSPDPLQIEAVMQRVKEAITRDSTRVVPNG----FT 446 Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IS GI E + AD+ LY+AK +G++++V Sbjct: 447 ISGGIQVIESHQEWDFDKQFKLADEKLYLAKTTGKDKLV 485 >gi|307946856|ref|ZP_07662191.1| diguanylate cyclase [Roseibium sp. TrichSKD4] gi|307770520|gb|EFO29746.1| diguanylate cyclase [Roseibium sp. TrichSKD4] Length = 351 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 2/134 (1%) Query: 130 SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE 189 +++ DID+FK+ ND FGH GD+V+ ++ + + R GGEEFA + Sbjct: 210 ALLMTDIDHFKKFNDTFGHQTGDQVLRLVALSVKQNVRSNDTACRYGGEEFAIILPTCPK 269 Query: 190 QEAAILANDLRKIIENSQ-INISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVA 247 A +A+ +R +++ + + S+G ++ ITIS GI+ + ++I RADQALY A Sbjct: 270 ANACTVADKIRDAVKSKELVKRSTGQNLGRITISIGISTYQSGDTAESLISRADQALYQA 329 Query: 248 KKSGRNRVVCFSDI 261 K GR+ V D+ Sbjct: 330 KHDGRDCVRTEDDL 343 >gi|307299972|ref|ZP_07579757.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti BL225C] gi|306904861|gb|EFN35444.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti BL225C] Length = 564 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 15/163 (9%) Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL N F L +L+++ D+D FK IND GH GD V+ +D+ Sbjct: 138 DVLTGLPNRRQFSDQLRGALPVPNGARLALMQIDLDDFKPINDTLGHGAGDAVLKMAADR 197 Query: 162 LVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + V F RL G+EFA A +E+ A L N ++ IN+ G S+ Sbjct: 198 IRSVLRDREFAYRLAGDEFAVIQWRADQPSEAERLADALINAFKEPFTVEGINVFVGASV 257 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I ++ + ++ AD ALY AKK GR R F+ Sbjct: 258 GIAVAPADGNEVEQ-----LMKAADIALYAAKKDGRGRSSTFT 295 >gi|304309898|ref|YP_003809496.1| hypothetical protein HDN1F_02470 [gamma proteobacterium HdN1] gi|301795631|emb|CBL43830.1| hypothetical protein HDN1F_02470 [gamma proteobacterium HdN1] Length = 993 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 20/173 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I +L+ D L+GL N + S ++ L+++F D+D FK IND GH VGD Sbjct: 554 IHKLAHYDPLTGLANRVLLVDHFDSALALAQRHSLPLALMFMDLDRFKIINDTLGHSVGD 613 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII------ENS 206 +V+ ++ Q V R GG+EF G + Q+A +A L + I E+ Sbjct: 614 EVLIHVAKQFKTSIRDEDTVARRGGDEFVFIFPGINSQQARNVAQKLSRSISEPFRSEHQ 673 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++NI+S I + G T+ +AD A+Y AK++GRN+ ++ Sbjct: 674 ELNITSSIGIAMYPDDG-------GDFETLARKADVAMYRAKQNGRNQFAFYT 719 >gi|300697792|ref|YP_003748453.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum CFBP2957] gi|299074516|emb|CBJ54067.1| putative signal transduction protein eal-ggdef domains [Ralstonia solanacearum CFBP2957] Length = 914 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N S FI+ L S E+ L++ F D+D FK +ND GH G Sbjct: 472 RLRHLASHDALTGLTNRSFFIAHLDSAIERARDESRELALFFLDLDRFKSVNDTAGHACG 531 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINI 210 D ++ + +L G + RLGG+EF E + A LA L + + Sbjct: 532 DTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQRVEGKRIAQLAEHLLAAMREPFDTV 591 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254 + ++ +S G+A H T + R AD A+Y AK++GRNR Sbjct: 592 NG--RYYLGVSIGVALYPHDGISGTDLLRSADAAMYRAKQNGRNR 634 >gi|222150744|ref|YP_002559897.1| hypothetical protein MCCL_0494 [Macrococcus caseolyticus JCSC5402] gi|222119866|dbj|BAH17201.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 354 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 9/168 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF-----ISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPV 150 +R ++ +D L+GL N AF I S S +K LS++ DID FK++ND FGH Sbjct: 181 SRFNKEHVVDYLTGLGNVRAFDRYLNIISRQSSEQKQSLSLLLIDIDDFKEVNDKFGHDA 240 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD V+ +S L + R GGEEF+ S + +A ++ + NS ++ Sbjct: 241 GDAVLKQMSQVLNNYVPDQSKIFRNGGEEFSVIFNDKSLNDTVKIAESIKNGVINSTFHL 300 Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +IH+T++ G+ R + I AD+ L+ AK G N ++ Sbjct: 301 QNRETIHLTVTIGVGYIPRSEIKTHRKIFKEADEMLHAAKNQGVNTIM 348 >gi|171060140|ref|YP_001792489.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170777585|gb|ACB35724.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 745 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 19/170 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I+QL+ D L+GL N L + +++F D+D+FK IND GH GD Sbjct: 310 IAQLAFYDPLTGLPNRRLLKDRLNQAMAISARSQREGALLFIDLDHFKDINDTRGHDKGD 369 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIEN--SQ 207 ++ ++ +L V R+GG+EF A L ++ EAA A R + E + Sbjct: 370 LLLQNVAQRLSGCVREGDTVARIGGDEFVVMLGADLSTATDEAASHA---RSVAEKILAA 426 Query: 208 INIS---SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 +N+ SG +H + S G+A H + + ++ RADQA+Y AK GRN Sbjct: 427 LNLPYLMSGEFVHCSASLGVALFNDHHDTVDELLKRADQAMYQAKAGGRN 476 >gi|149914317|ref|ZP_01902848.1| diguanylate cyclase response regulator [Roseobacter sp. AzwK-3b] gi|149811836|gb|EDM71669.1| diguanylate cyclase response regulator [Roseobacter sp. AzwK-3b] Length = 463 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 16/168 (9%) Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+GL N I +++ D+D+FK+IND GH GD V++ + Sbjct: 293 IDPLTGLYNRRYALPFLDRLIDETRRDGRGFAVMVADLDHFKRINDRHGHAAGDAVLSQI 352 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPSIH 217 + L + R+GGEEF + EA+ +A L + S +++ SS ++ Sbjct: 353 ARLLKSNLRDEDMIARIGGEEFLIVMPDTGRDEASRMARRLCAAVRRSPLHVMSSEAPLN 412 Query: 218 ITISAGIAERCHKEP------ISTIIYRADQALYVAKKSGRNRVVCFS 259 +TIS G A H P + T++ AD+ALY +K GRN +V FS Sbjct: 413 VTISIG-ATLGHPRPDAETPRVDTLLDEADRALYGSKSDGRN-MVTFS 458 >gi|149186903|ref|ZP_01865212.1| hypothetical protein ED21_22133 [Erythrobacter sp. SD-21] gi|148829412|gb|EDL47854.1| hypothetical protein ED21_22133 [Erythrobacter sp. SD-21] Length = 498 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 8/169 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ +LS D L+ L N I+ L S + ++++ D+D FK IND++GH +GD Sbjct: 58 KKLERLSNSDALTLLPNRRGLHRDITDLMSPDHEVALAIVDLDGFKIINDHYGHVLGDAT 117 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SG 213 I ++ L + G + RLGG+E+ A L S E +L R+IIE +I Sbjct: 118 IKEIARILADICGEEARIYRLGGDEY--AVLMSGELAGTLLEGHCRRIIERLAKSIKVDN 175 Query: 214 PSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVVCFSD 260 + + S G+A + + S ++ RAD A+Y +K+ G+ R F++ Sbjct: 176 RRLTLGASIGLARNAPGQGVTSSELLRRADVAMYASKRGGKMRCTWFNE 224 >gi|144897986|emb|CAM74850.1| GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 395 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 8/145 (5%) Query: 118 FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 F++SL + L++ F D+D FK IND++GH GD + S L V + R GG Sbjct: 247 FLTSLRTEG-PLALAFVDLDNFKSINDHYGHEEGDNTLRNASTALRKVLRRGDVLVRWGG 305 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--IST 235 EEF A + E+ A I LR+ + P +T S G+AER + S Sbjct: 306 EEFLALMPNTDEEGARIALARLRE--AGLGLRPDGNP---VTASIGVAERLADQAGQWSE 360 Query: 236 IIYRADQALYVAKKSGRNRVVCFSD 260 ++ +ADQ +Y+AK++G+N+V+ + Sbjct: 361 LVEKADQRMYMAKQTGKNKVIGIDN 385 >gi|84393934|ref|ZP_00992675.1| putative regulatory component of sensory transduction system [Vibrio splendidus 12B01] gi|84375433|gb|EAP92339.1| putative regulatory component of sensory transduction system [Vibrio splendidus 12B01] Length = 316 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 17/168 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+ L N + L G N ++++ D+D+FK NDN+GH GD Sbjct: 140 LQQQANEDGLTKLYNRRYMDTKLEESIAWHGRRNIPMTVILLDVDFFKPYNDNYGHIQGD 199 Query: 153 KVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL-ANDLRKII-ENSQ 207 K + L+ QL V G FVGR GGEEF L ++ +AA+L A +++ + E + Sbjct: 200 KCLQGLAGTLKQLFVRAGE--FVGRYGGEEF-VLILSDTDSDAAMLQATRIKEALHEMNY 256 Query: 208 INISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 + S S +T S G+ E ++I + DQALY AK+SGRN Sbjct: 257 AHEHSTVSDRVTASQGVLSFVPDGGESTASIYEKVDQALYQAKQSGRN 304 >gi|326387145|ref|ZP_08208755.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Novosphingobium nitrogenifigens DSM 19370] gi|326208326|gb|EGD59133.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Novosphingobium nitrogenifigens DSM 19370] Length = 904 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 82/178 (46%), Gaps = 11/178 (6%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDY 138 SG+ L E + S+L+ D L+GL N SL ++ D+D Sbjct: 340 SGADLTERRRTQQHASRLAHFDSLTGLANRFFMSQSLEKILVAPQVQQRACAVFLIDLDR 399 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 FKQ+ND GHP GD+++ ++ +L G VGRLGG+EF G E+ +LA Sbjct: 400 FKQVNDTLGHPAGDQLLKQVAQRLERGVGAAGRVGRLGGDEFEIILAGRIER--PMLAQI 457 Query: 199 LRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254 IIE+ SQ + I S GIA S + R AD ALY AK GR R Sbjct: 458 AAHIIESLSQPYTLDLGRVMIGASIGIAIAPDDGVTSEALIRNADLALYAAKDGGRGR 515 >gi|220934593|ref|YP_002513492.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp. HL-EbGR7] gi|219995903|gb|ACL72505.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp. HL-EbGR7] Length = 314 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 11/176 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIN 143 +EL + +LS D L+GL N F S L ++ LS++ DIDYFKQ N Sbjct: 135 QELVRLQKELEELSFKDGLTGLANRRMFDSVLSLEWSNARRNHQPLSLILLDIDYFKQYN 194 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D +GH GD + ++ L F+ R GGEEF + Q A +A R + Sbjct: 195 DCYGHLQGDDCLMRVARILESAATRARDFIARFGGEEFVLILPETDAQAAEKVAQRCRTL 254 Query: 203 IENSQINISSGPSIH-ITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255 I ++ I S S+ +T S G++ H + + D+ LY AK+ GRNRV Sbjct: 255 ILDAGIPHESSESLPFLTASLGVSTIIPSHGDEPGEFVDEVDRLLYKAKQEGRNRV 310 >gi|167746149|ref|ZP_02418276.1| hypothetical protein ANACAC_00845 [Anaerostipes caccae DSM 14662] gi|167654664|gb|EDR98793.1| hypothetical protein ANACAC_00845 [Anaerostipes caccae DSM 14662] Length = 483 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 13/163 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLS--IVFFDIDYFKQINDNFGHPVGDK 153 R + + D L+G+ N I + N S ++F D+D FKQIND+ GH GDK Sbjct: 301 RWKEAADNDALTGINNRKGLEEKILKIMKENGDSSGVLLFLDLDDFKQINDSKGHAFGDK 360 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ +++++ + VGR+GG+EF G ++AA+ K E + I G Sbjct: 361 VLRTVAEKIKSCVRSTDVVGRIGGDEFIVFLNGIGGKDAAL------KKAEEIEQKIQDG 414 Query: 214 -PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNR 254 +T+S GIA+ +I RADQALY +K G+NR Sbjct: 415 FHGYPVTVSIGIAQFPEDGAEFDVLIKRADQALYYSKNKGKNR 457 >gi|157374558|ref|YP_001473158.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157316932|gb|ABV36030.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 581 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 110/238 (46%), Gaps = 27/238 (11%) Query: 42 VIFIANI-FLFYIGLTPFYGLEY------ILVENLSLVIISITISLLLGYISGSILKELF 94 +IFIA + + F+I LT ++ + I N I S L + L+++ Sbjct: 330 LIFIAGVLYTFFIWLTNWHFISKGIIQPVIATSNAMQAIASEKTDTPLPKTNNLELQQMV 389 Query: 95 ISYN-------RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 S ++ +S ID L+G N F + S + LSI+ FD+D FK Sbjct: 390 SSLETLKSYAAQVKAISEIDGLTGAFNRRYFDLRLDQALQSAHNTPHPLSIILFDVDNFK 449 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVV--FGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 Q ND +GH GD+ + +S + + +F R GGEEF + A +A Sbjct: 450 QFNDRYGHVSGDQCLKQISASMKAMPELQNKIF-ARYGGEEFIVFLPYTDATLAKEIAEL 508 Query: 199 LRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253 +RK I + QI + S HIT+S G+ +T II +ADQALY AK++G+N Sbjct: 509 MRKKIFHLQIPHEDSVHRQHITVSIGVCTTVPNNDTTTESIIIQADQALYEAKQAGKN 566 >gi|78358348|ref|YP_389797.1| diguanylate cyclase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220753|gb|ABB40102.1| diguanylate cyclase (GGDEF domain) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 476 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 20/195 (10%) Query: 79 SLLLGYISGSILKELFI----SYN-RISQLSRIDCLSGLLNHSAFIS--SLGSYNE---- 127 +L +G++S ++ L + Y RI L+R D L+G N L +Y Sbjct: 290 TLAMGFVSTLVILALCVLAVNKYQARIEHLARTDPLTGAANRRELEERFDLAAYRASRDG 349 Query: 128 -KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 SI+ D+D FK++ND GH GD+V+A ++ + + R GG+EF L Sbjct: 350 IPFSILIIDLDGFKEVNDRLGHLAGDEVLASMARVIRGRLRPTDLLARWGGDEF-IILLD 408 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 +E+ A LA R+I + + P I + S+G+A + ++++ RAD A+Y Sbjct: 409 GNEESARALA---RRI----SAAVCAAPDIPVGFSSGVAAYRDSDDLTSLTRRADNAMYQ 461 Query: 247 AKKSGRNRVVCFSDI 261 AK G + V+ D+ Sbjct: 462 AKARGGDCVMAAEDL 476 >gi|313497744|gb|ADR59110.1| Diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida BIRD-1] Length = 332 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 15/194 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--- 123 +N SL + L +++ + ++L NR +L+ D L+ + N S+L Sbjct: 143 KNQSLEFQVAERTRELSWVNQQLQRQL--DENR--ELAERDALTRVANRYRLESALQLEC 198 Query: 124 ----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 + + LS++ D+D FK IND +GH GD + +++ L + R GG+E Sbjct: 199 QRAQRFRQPLSLIAMDMDDFKPINDRYGHARGDAALVRVAESLRTCLRELDLLARWGGDE 258 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F ++ EA +A LR+++E + +T+S G+ + E ++ R Sbjct: 259 FVIVLPQTALGEALDVAARLRQVLE----RVEPVGDCRLTMSYGVVQWREGEDQHALLAR 314 Query: 240 ADQALYVAKKSGRN 253 AD+ALY AK +G+N Sbjct: 315 ADKALYRAKGTGKN 328 >gi|226357436|ref|YP_002787175.1| diguanylate cyclase domain protein; membrane protein [Deinococcus deserti VCD115] gi|226319426|gb|ACO47421.1| putative diguanylate cyclase domain protein; putative membrane protein [Deinococcus deserti VCD115] Length = 373 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 17/164 (10%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 QL+ D L+GL N F L S + LS++F D+D FKQ+ND +GH VGD Sbjct: 206 QLAYTDALTGLPNRRYFEQELDSALAAAGEVTPPQPLSVIFMDLDGFKQVNDTYGHDVGD 265 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIENSQINIS 211 +V+ ++++L F + RL G+EFAA + E AI + ++ E I+ Sbjct: 266 QVLKVVAERLRSTFRGGELIVRLSGDEFAALIPTATPEGMQAIRS----RVAEALGKPIA 321 Query: 212 -SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 G +HI S G + H + T+++ AD A+Y KS R Sbjct: 322 LGGQELHIAASLGFSVFPEHGTDVRTLLHHADTAMY-GMKSHRT 364 >gi|161520744|ref|YP_001584171.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616] gi|189353073|ref|YP_001948700.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616] gi|160344794|gb|ABX17879.1| diguanylate cyclase [Burkholderia multivorans ATCC 17616] gi|189337095|dbj|BAG46164.1| putative diguanylate cyclase [Burkholderia multivorans ATCC 17616] Length = 514 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 11/169 (6%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNF 146 ++ I L+R D L+GL N + L + +++++ D+D FK IND F Sbjct: 331 LTEQHIRHLARHDALTGLPNRHELHAELERMLSRPPRRPDTAVAVMYLDLDGFKAINDRF 390 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+++ ++++L R+GG+EF A ++ + +A L I ++ Sbjct: 391 GHQAGDELLMQVAERLGRALRDGALAARIGGDEFVVAVDDTTMDACSRVAAQLIAQI-SA 449 Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254 +S G ++ IS GIA + H P +I +AD ALY AK +G+ R Sbjct: 450 PYTLSIGETVRFGISIGIALDDGHGTP-DELIRQADSALYDAKSAGKGR 497 >gi|17988999|ref|NP_541632.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1 str. 16M] gi|17984836|gb|AAL53896.1| diguanylate cyclase/phosphodiesterase domain 1 (ggdef) [Brucella melitensis bv. 1 str. 16M] Length = 212 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 19/208 (9%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISY-------NRISQLSRIDCLSGL 112 G++ V L +++ I++ LG S L+EL SY N +++++ +D L+GL Sbjct: 10 GVKSDTVTILVRLLLPFLIAMPLGVFWFSRLEELERSYRTAVKRANELARVASVDPLTGL 69 Query: 113 LNHSAFISSLGSYNEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 LN +FI + N+ +F D+DY KQIND +GHP GD I ++ L + Sbjct: 70 LNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGHPAGDDAIIAVAQALEDSLSSD 129 Query: 170 MFVGRLGGEEFAA-AALGSSEQEAAILAN-DLRK--IIENSQINISSGPSIHITISAGIA 225 + R+GG+EF A G+ ++L++ LR ++ + N+ S +T+S G Sbjct: 130 SLIARIGGDEFCAFVPKGAINDVDSVLSDISLRADGLLREKRPNVGS----SLTVSVGRI 185 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRN 253 + ++ AD+ LY KKS R Sbjct: 186 SCKTGQIFEEVLSIADEQLY-RKKSQRQ 212 >gi|50122772|ref|YP_051939.1| hypothetical protein ECA3851 [Pectobacterium atrosepticum SCRI1043] gi|49613298|emb|CAG76749.1| putative exported protein [Pectobacterium atrosepticum SCRI1043] Length = 534 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 77/157 (49%), Gaps = 10/157 (6%) Query: 107 DCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D ++ LLN S+L + + +++ DID FK+IND +GH VGD VI LS + Sbjct: 376 DPMTELLNRRGLDSALRYWQMGQKSFAVIALDIDRFKRINDTYGHDVGDNVIRDLSQLIR 435 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 + R GGEEF ++ A +A LR+ + S I + ITIS G Sbjct: 436 SNSRDSDILCRSGGEEFLILLPETTLDVALDIAERLRQRTQESTIPVVGS----ITISLG 491 Query: 224 IA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +A + I AD+ALY AK+ GRNRVV Sbjct: 492 VALWQPAVNDISIERTFKLADEALYKAKQEGRNRVVS 528 >gi|284990304|ref|YP_003408858.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus DSM 43160] gi|284063549|gb|ADB74487.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus DSM 43160] Length = 621 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 87/160 (54%), Gaps = 9/160 (5%) Query: 107 DCLSGLLNHSAFISS----LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GL N + + + L + S++ D+D FK +ND+ GH VGD++++ + ++ Sbjct: 189 DPLTGLANRTLLLETTARMLAQRPDPTSVLLLDLDDFKDVNDSRGHAVGDQLLSTVGRRI 248 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA 222 + V RLGG+EFA GS+ A + L + + ++ G ++H+ +S Sbjct: 249 QGCVRSVDQVARLGGDEFAVVVAGSARIAAEVGERVLAALADPVVVD---GRALHVRVSI 305 Query: 223 GIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G+A+ T++ AD A+Y+AK SG+NRVV +++ Sbjct: 306 GVADSTSVGDHSAGTLLRNADLAMYLAKSSGKNRVVVYAE 345 >gi|221212627|ref|ZP_03585604.1| WspR [Burkholderia multivorans CGD1] gi|221167726|gb|EEE00196.1| WspR [Burkholderia multivorans CGD1] Length = 345 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 14/177 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIN 143 ++L + + +L D L+GL N L + +LS++ D+D+FK N Sbjct: 161 QQLLEANLELRRLMHSDGLTGLSNRRYLDEYLAAEWRRCTRERAELSLLMIDVDHFKLYN 220 Query: 144 DNFGHPVGDKV---IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 D +GH GD V +A Q + G R GGEEFA G+S A +L +R Sbjct: 221 DTYGHVSGDHVLRQVAATIAQCLRPSGD--LAARFGGEEFAVVMPGTSAGAARLLGEKIR 278 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255 ++ ++ + H+T+S G A P + +I AD+ALY AK GRNRV Sbjct: 279 LAVDALRLEHGQSTAGHVTVSIGGASIVPAPGLPTTALIEAADRALYRAKHDGRNRV 335 >gi|229917551|ref|YP_002886197.1| diguanylate cyclase with PAS/PAC sensor [Exiguobacterium sp. AT1b] gi|229468980|gb|ACQ70752.1| diguanylate cyclase with PAS/PAC sensor [Exiguobacterium sp. AT1b] Length = 686 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 11/171 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 ++ L+ D L+ L N F++ L ++ L+++ D+D FKQIND FGH V Sbjct: 517 KQLKHLAYHDTLTDLPNRRFFLAYLEEAIDRTEFEQGELAVLALDVDRFKQINDTFGHDV 576 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ L+ +L V + RLGG+EFA + + L KII+ Q Sbjct: 577 GDELLRQLARRLTSVLRKQDMIARLGGDEFAVLIRFN---DPCALHRVAEKIIQALQRPW 633 Query: 211 SSGPSIHITISA-GIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 IT S+ G A I ++ RAD ALY AK GRN+ D Sbjct: 634 EIDQHTFITTSSVGGARYVKGLSIKQLLKRADLALYEAKAGGRNQYALAKD 684 >gi|167590560|ref|ZP_02382948.1| diguanylate cyclase [Burkholderia ubonensis Bu] Length = 238 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 11/163 (6%) Query: 100 ISQLSRIDCLSGLLN----HSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151 I L+R D L+GL N H+ L + ++++ D+D FK IND FGH G Sbjct: 60 IRHLARHDALTGLPNRHELHAELKRMLARRTRRHGLAPAVMYLDLDGFKAINDRFGHHAG 119 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINI 210 D V+ ++ +L V R+GG+EF A ++ Q +A A +RKI ++ + Sbjct: 120 DDVLTQVAARLSETLPQGELVARIGGDEFVVAIDDTTMQACSAQAAQIIRKI--SAPYTL 177 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 S G ++ + IS GIA + +I AD ALY AK SG+ Sbjct: 178 SIGETVSLGISIGIALDRDCDAPEELIRHADSALYEAKSSGKG 220 >gi|195953816|ref|YP_002122106.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1] gi|195933428|gb|ACG58128.1| diguanylate cyclase [Hydrogenobaculum sp. Y04AAS1] Length = 376 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 4/157 (2%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 S ID L+GL N + ++ + E + DID+FK+IND +GH GD V+ ++ + Sbjct: 218 SYIDELTGLPNRK-LLKNIKNRQEDYVVAMLDIDFFKRINDTYGHDAGDIVLKEVAQAIK 276 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG 223 V R GGEEF L EA + + +I S + +I +++S G Sbjct: 277 SSIREDDIVLRWGGEEF-LILLKCKHHEACLKTLERLRIKIKSIDININNYNIKLSVSIG 335 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I + + + I +AD+ALY AK+SGR+R+ + D Sbjct: 336 ICLKA--KNLDEGIKKADEALYKAKRSGRDRIEIYDD 370 >gi|118443169|ref|YP_878465.1| diguanylate cyclase/phosphodiesterase [Clostridium novyi NT] gi|118133625|gb|ABK60669.1| Diguanylate cyclase/phosphodiesterase domain 2 [Clostridium novyi NT] Length = 192 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 14/174 (8%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFK 140 S+L +L++ ++ + D ++G+LN A + L NE + I F D+D K Sbjct: 20 SVLNKLYLEKEKLKYYANTDVMTGVLNRRAGLKLLNKEFDLSKISNENIVICFADVDKLK 79 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND FGH GDKV+ F++ L F+ R+GG+EF +S ++ + N + Sbjct: 80 MINDTFGHKEGDKVLKFVAKTLRDSIRKDDFIIRMGGDEFLIVFPRTSIKDVGKICNRID 139 Query: 201 KIIENSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKS 250 +I+E +IN +S ++ +S G E +K +S +I AD +Y K+ Sbjct: 140 EILE--EINKNS-CDYNLNLSYGFYEYNSKVDNKMTLSDLIKSADMEMYKKKRE 190 >gi|21492856|ref|NP_659931.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] gi|190894094|ref|YP_001984388.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|21467281|gb|AAM54944.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] gi|190699755|gb|ACE93838.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|327192457|gb|EGE59412.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 852 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 13/180 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 + EL S +I Q++ D ++ L N F +S S + ++ DID+FK + Sbjct: 401 VTELNASREKIRQMAFYDPVTSLPNRLLFNERLQKVVSDASSQRRRTGVMLIDIDHFKVV 460 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLR 200 ND GHPVGD+++ ++ +L V RLGG+EFA + +++ + + L Sbjct: 461 NDTMGHPVGDQLLCQVATRLKKSVRDLDTVARLGGDEFAILLPEIQTTDDLDWVACSILE 520 Query: 201 KIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + E+ ++ G ++++ S GIA ++ ++ AD A+Y+AK+SGRN +S Sbjct: 521 RFKESFLLD---GKEVYVSCSVGIAISPDDSTDVNDLVKYADSAMYLAKRSGRNSFRFYS 577 >gi|327398277|ref|YP_004339146.1| diguanylate cyclase [Hippea maritima DSM 10411] gi|327180906|gb|AEA33087.1| diguanylate cyclase [Hippea maritima DSM 10411] Length = 627 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Query: 107 DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + F +++ N I+ D+D+FKQ+ND +GH VGD+V+ + Sbjct: 459 DPLTGLYNRRFLDEFAATFSATVKRRNTLAGILMCDVDFFKQVNDVYGHNVGDEVLRGVV 518 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + R GGEEF E+ +A +R +E ++I + G I T Sbjct: 519 RAIAKSIRESDIAVRFGGEEFLVLLQDVDEKSVLEIAERIRSDVEKTEITV-QGNVIKKT 577 Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S G++ + K I + +D A+Y AK++GRNRVV F Sbjct: 578 LSIGVSIFPKDSKNLWQCIKF-SDVAMYKAKEAGRNRVVRFE 618 >gi|299136567|ref|ZP_07029750.1| response regulator receiver modulated diguanylate cyclase [Acidobacterium sp. MP5ACTX8] gi|298601082|gb|EFI57237.1| response regulator receiver modulated diguanylate cyclase [Acidobacterium sp. MP5ACTX8] Length = 313 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 15/161 (9%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N SA ++ L E+ +SI+ DID+FKQIND GHPVGD+V+ + Sbjct: 142 DGLTQLWNRSAVLALLQKAIERSMNGGNAISILLCDIDHFKQINDGHGHPVGDEVLEQFA 201 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-PSIHI 218 +L +VGR GGEEF A +R II +G ++ Sbjct: 202 LRLKNGVRATDWVGRYGGEEFLLVLNDCKAAHLWARAEHIRTIIAQEPFATKAGFLNVST 261 Query: 219 TISA----GIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +I A G+A E +++ +AD ALY AK GRNRV Sbjct: 262 SIGAITFDGLASSMSLE---SMVKQADTALYRAKSLGRNRV 299 >gi|222529500|ref|YP_002573382.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor bescii DSM 6725] gi|222456347|gb|ACM60609.1| diguanylate cyclase with GAF sensor [Caldicellulosiruptor bescii DSM 6725] Length = 557 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 12/173 (6%) Query: 97 YNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 Y ++ ++ +D L+G N +S G Y +SI FD+D FK++ND +GH Sbjct: 382 YQQMRSMAMVDGLTGAFNRIYLYEVLEREIQASAGRY--PISIALFDVDNFKKLNDTYGH 439 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDKV+ + V R GGEEF EA + +R+ IE S+I Sbjct: 440 LFGDKVLQTIVRIAREKVRKGDIVARYGGEEFIIVFNHLESNEAYKVVERIRRAIE-SEI 498 Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +T+S GIA H + + +I AD A+Y AK SG+N V ++ Sbjct: 499 IEDNLIQTRVTVSFGIASYPLHADNVKDLIKCADIAMYRAKSSGKNCTVVYNQ 551 >gi|91779798|ref|YP_555006.1| diguanylate cyclase [Burkholderia xenovorans LB400] gi|91692458|gb|ABE35656.1| Putative diguanylate cyclase (GGDEF domain) [Burkholderia xenovorans LB400] Length = 409 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 20/183 (10%) Query: 93 LFISYNRISQL----SRIDCLSGLLNHS---------AFISSLGSYNEKL----SIVFFD 135 L ++ R QL ++ D L+G LN S A + + + + S++ D Sbjct: 209 LLMAAERSHQLLFDHAQRDPLTGALNRSGLRLSYERVAAARGMARHADTMLGTVSLIVID 268 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL 195 +D+FK IND GH GD V+ + T + R GG+EF ++ EA + Sbjct: 269 LDHFKAINDTHGHTTGDDVLRLFATTARDDLRTGDTLARYGGDEFVVMLPHTAGGEALAI 328 Query: 196 ANDLRKIIENSQINISSGPSIHI--TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252 A +R N+ + + ++ + T+S GIA + + TI+ RAD+ALY +K+ GR Sbjct: 329 AERIRVAFANATGALGTLGTLAVQPTLSVGIATGSLAGDTLDTILQRADEALYRSKREGR 388 Query: 253 NRV 255 NRV Sbjct: 389 NRV 391 >gi|52840285|ref|YP_094084.1| sensory box protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627396|gb|AAU26137.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 985 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N+KL+++F D+D FKQIND+ GH +GD ++ LS++ + + + RLGG+EF Sbjct: 589 NQKLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILE 648 Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243 +++A +A R+I SQ + + ++ S GIA H + T++ AD A Sbjct: 649 NIMQDKDAESIAKKCREIC--SQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTA 706 Query: 244 LYVAKKSGRNRVVCFSD 260 +Y +K G+N F + Sbjct: 707 MYQSKIRGKNNWTVFQN 723 >gi|152967529|ref|YP_001363313.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans SRS30216] gi|151362046|gb|ABS05049.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans SRS30216] Length = 731 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 S + +L++ D L+GL N S L + + +++V D+D FK +ND GH Sbjct: 296 STGELVRLAQCDSLTGLANRSVMDLRLVEALETATPTDAVALVLLDLDRFKLVNDTLGHQ 355 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-AILANDLRKIIENSQI 208 +GD ++ ++ +L + RLGG+EF G EA +I+A DL + + + + Sbjct: 356 IGDALLRQVAVRLQDAVPPGAVLARLGGDEFVVMVPGVDRPEAVSIMARDLLRRL-RAPM 414 Query: 209 NISSGPSIHI-TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + P + T SAGIA H + AD ALY AK GR+RV + Sbjct: 415 MLPGLPEPFVCTSSAGIAV-GHSGTADDLFRSADMALYRAKDGGRDRVALY 464 >gi|332304853|ref|YP_004432704.1| diguanylate cyclase with PAS/PAC sensor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172182|gb|AEE21436.1| diguanylate cyclase with PAS/PAC sensor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 327 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 26/227 (11%) Query: 53 IGLTPFYGLEYILVE--NLSLVIISITISLLLGYISGSI---------LKELFISYNRIS 101 I L +G + +LVE + + + + +++S L I+ S L + Y + Sbjct: 99 IDLPLSHGPKEVLVERTDRTWLEVDLSVSCLPASITESSPFYVGVMHSLTKHKSEYGELR 158 Query: 102 QLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N +L + + +S++ D+DYFK ND FGH GDK Sbjct: 159 RLASTDHLTGLANRHNLEKTLQKSWLECLNTEQAISLILIDVDYFKLFNDQFGHINGDKC 218 Query: 155 IAFLSDQLVVVF-GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR---KIIENSQINI 210 + ++ + R GGEEFA A I+A D++ I++ S++ + Sbjct: 219 LQKIAKTIEQCLPANDCMAARYGGEEFAVILPRLPSVSAEIVAKDIQNQINILKFSELGL 278 Query: 211 SSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRV 255 S S +++S GIA +I AD ALY AK GRNR+ Sbjct: 279 PS--SFRVSVSQGIATELGGRYRTSEALICAADTALYRAKSEGRNRI 323 >gi|325915850|ref|ZP_08178149.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325537971|gb|EGD09668.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 573 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 12/159 (7%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N SL LS++ D+D+FKQ ND+ GH GD ++A + Sbjct: 402 DALTGLYNRRYLEESLSHELARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVG 461 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--H 217 + L+ R GGEEF + EA LA +R I + + +S G Sbjct: 462 ELLLTRLRAEDVACRYGGEEFTVILPEADGDEAMRLAEQIRSHI--AALAVSDGQRALPR 519 Query: 218 ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T S G+A E +++I +AD ALY AK GRNRV Sbjct: 520 VTASIGVASYPADGELGASLIQKADAALYAAKHRGRNRV 558 >gi|225387544|ref|ZP_03757308.1| hypothetical protein CLOSTASPAR_01298 [Clostridium asparagiforme DSM 15981] gi|225046380|gb|EEG56626.1| hypothetical protein CLOSTASPAR_01298 [Clostridium asparagiforme DSM 15981] Length = 540 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 17/160 (10%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 S D L+GL N + L +N + L++++ D+DYFK +ND +GH VGD + + Sbjct: 382 SNTDFLTGLYNRRSLYQYL--HNNRNGRLLNLLYVDLDYFKHVNDTYGHKVGDDALILTA 439 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAILANDLRKIIENSQINISSGP 214 L F F+ R+GG+EF LG +++E A L + L + +++ S Sbjct: 440 KVLRECFKNE-FIARIGGDEFLIVQLGEAQREALESKAQQLLDQLSDVFGSTENMDSLSA 498 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 SI I + G +R I +I ++D ALY AK+SGR + Sbjct: 499 SIGI-VQNGAPDR----DIDLLIQQSDAALYQAKESGRGK 533 >gi|254470638|ref|ZP_05084041.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062] gi|211959780|gb|EEA94977.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062] Length = 972 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 6/138 (4%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AA 184 +E I++ D+D FK IND+ GH VGDK++ ++ L V RLGG+EFA + Sbjct: 559 DEHFGILWMDLDEFKTINDSLGHAVGDKLLVHVAKILREKVTNKEMVARLGGDEFAILSK 618 Query: 185 LGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQ 242 L +S ++ LA ++ K++ + G I + S GIA R H+ + +I AD Sbjct: 619 LPASREQLEQLAKEVLKVVASP--CFLEGHEIVVAASVGIAMFSREHQN-VDELIRFADL 675 Query: 243 ALYVAKKSGRNRVVCFSD 260 ALY AK GRN F D Sbjct: 676 ALYQAKNDGRNTFRFFED 693 >gi|126669004|ref|ZP_01739941.1| sensory box protein [Marinobacter sp. ELB17] gi|126626520|gb|EAZ97180.1| sensory box protein [Marinobacter sp. ELB17] Length = 664 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 15/171 (8%) Query: 100 ISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I Q + D L+GL N I N+ ++ +F D+D FK IND GH GD Sbjct: 323 IWQQAHYDSLTGLANRKMANDKLEQAIKVADRSNKSIAFLFLDLDLFKHINDTQGHDFGD 382 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINI 210 ++ +S +L F + R GG+EF L S +Q I ++ ++K+ E ++ Sbjct: 383 MLLVEVSKRLRSYFREIDTLARFGGDEFVIIVGGLDSPDQVDLIASDLVKKMAEPFKVGQ 442 Query: 211 SSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++HI+ S GI + +P+ I+ ADQA+Y AK +G NR F+ Sbjct: 443 E---TVHISTSVGITIYPQDASDPVE-ILRHADQAMYAAKNNGGNRFQYFT 489 >gi|152995585|ref|YP_001340420.1| PAS/PAC sensor-containing diguanylate cyclase [Marinomonas sp. MWYL1] gi|150836509|gb|ABR70485.1| diguanylate cyclase with PAS/PAC sensor [Marinomonas sp. MWYL1] Length = 292 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 6/131 (4%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 LS++F DID FK IND +GH VGD ++ ++ +L VGRLGG+EF + Sbjct: 161 LSVLFIDIDGFKDINDGYGHAVGDLLLQLIAKRLGGCVRKSDTVGRLGGDEFLIILNKVN 220 Query: 189 EQE-AAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALY 245 E AA++A +R + S++ + G ++ ++ S GIA KEP+ ++ AD A+Y Sbjct: 221 NAESAALVAEKIRAAL--SEVFVVEGSTLSVSASIGIASYPENGKEPLD-LVQSADHAMY 277 Query: 246 VAKKSGRNRVV 256 AK +G ++V+ Sbjct: 278 QAKNNGGDKVI 288 >gi|26991094|ref|NP_746519.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas putida KT2440] gi|24986130|gb|AAN69983.1|AE016636_6 sensory box protein [Pseudomonas putida KT2440] Length = 332 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 15/194 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--- 123 +N SL + L +++ + ++L NR +L+ D L+ + N S+L Sbjct: 143 KNQSLEFQVAERTRELSWVNQQLQRQL--DENR--ELAERDALTRVANRYRLESALQLEC 198 Query: 124 ----SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE 179 + + LS++ D+D FK IND +GH GD + +++ L + R GG+E Sbjct: 199 QRAQRFRQPLSLIAMDMDDFKPINDRYGHARGDAALVRVAESLRTCLRELDLLARWGGDE 258 Query: 180 FAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 F ++ EA +A LR+++E + +T+S G+ + E ++ R Sbjct: 259 FVIVLPQTALGEALDVAARLRQVLE----QVEPVGDCRLTMSYGVVQWREGEDQHALLAR 314 Query: 240 ADQALYVAKKSGRN 253 AD+ALY AK +G+N Sbjct: 315 ADKALYRAKGTGKN 328 >gi|146280275|ref|YP_001170431.1| diguanylate phosphodiesterase [Rhodobacter sphaeroides ATCC 17025] gi|145558516|gb|ABP73126.1| diguanylate phosphodiesterase [Rhodobacter sphaeroides ATCC 17025] Length = 936 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +++L D L+GL N S L + ++++F D+D FK +ND+ GH VGD ++ Sbjct: 500 LARLRHYDPLTGLANRSFLQECLANATLAGGPDVALLFIDLDRFKAVNDSMGHGVGDGLL 559 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ LV V RLGG+EF G LA LR++++ Q +G Sbjct: 560 IEVAHSLVASVRPEDLVVRLGGDEFVVLCHGLDRAAVTGLAERLRQVLD--QPFEVTGRK 617 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 HI+ S GIA + ++ AD A+Y AKK+G NR Sbjct: 618 CHISASIGIAMSDSIGELD-LVRAADIAMYAAKKNGGNR 655 >gi|315181586|gb|ADT88499.1| periplasmic/7TM domain sensor diguanylate cyclase [Vibrio furnissii NCTC 11218] Length = 612 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 14/168 (8%) Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G+LN S S ++ +V D+D FK +ND +GH GD ++ L Sbjct: 439 VDSLTGILNRRGLNRYFETLKSRASSADDTAIVVLIDLDEFKPVNDRYGHEAGDMLLQTL 498 Query: 159 SDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + ++ +GRLGG+EF A G S+ E + L I + I + S Sbjct: 499 AQRMRSRLPEHAGLGRLGGDEFVALFAGQTGRSKHELEQIGVQLLAAI-SEPIALHSDVV 557 Query: 216 IHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDI 261 +H+ S G++ C P S T + AD A+Y K +G+N VV SD+ Sbjct: 558 VHVQASIGVS-LCTIAPHSFATALRAADTAMYDIKHNGKNGVVVVSDV 604 >gi|307727099|ref|YP_003910312.1| diguanylate cyclase [Burkholderia sp. CCGE1003] gi|307587624|gb|ADN61021.1| diguanylate cyclase [Burkholderia sp. CCGE1003] Length = 531 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 10/166 (6%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N + L + LS +F DID+FK+ ND +GH GD+ Sbjct: 352 RLAATDPLTGLSNRRVLDNRLDEEWRRARRTGQPLSALFIDIDHFKRFNDTYGHASGDEA 411 Query: 155 IAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ +++ + + V R GGEEFA +S A +A +R+ ++ I Sbjct: 412 LSAVAECISSTVRRAVDLVARYGGEEFAVILPDTSADGARAVAEKIRRSVQAQDILHGGA 471 Query: 214 PSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +T+S G A ++ AD+ LYVAK +GRNRV C Sbjct: 472 DPVTVTVSVGCATIVPAQGANALDLLAAADRQLYVAKAAGRNRVAC 517 >gi|228911188|ref|ZP_04074993.1| Sensory box protein [Bacillus thuringiensis IBL 200] gi|228848364|gb|EEM93213.1| Sensory box protein [Bacillus thuringiensis IBL 200] Length = 735 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++++L + V R GG+EF +++AI + I N Sbjct: 356 LGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469 >gi|120609587|ref|YP_969265.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gi|120588051|gb|ABM31491.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 424 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 33/212 (15%) Query: 66 VENLSLVIISITIS---LLLGYIS--GSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 +E L V +++ + LL+G + +L++ I++ +R+D L G LN + ++ Sbjct: 201 LEALHFVALALALPAYVLLMGRVRLLHRLLQKTSSEMKSIAESARLDAL-GCLNRRSILA 259 Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 +L + L + D+D+FK+IND GH GD+V+ S + F G Sbjct: 260 ALEEQKQLADESGIPLCLAVVDLDHFKRINDEMGHLCGDEVLRTFSQLAQQIVRGDDFFG 319 Query: 174 RLGGEEF--------AAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIHITISAGI 224 R GGEEF AL + E+ + + ++D ++ + +T+S G+ Sbjct: 320 RYGGEEFLLIFPATPLLPALNTCERIRSQVESHDWKEPLRG-----------RVTVSVGV 368 Query: 225 AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + E + RAD A+Y+AK+ GRN+VV Sbjct: 369 TQYVLGESVLEFFSRADTAMYLAKQGGRNQVV 400 >gi|59714195|ref|YP_206970.1| two component response regulator protein [Vibrio fischeri ES114] gi|59482443|gb|AAW88082.1| two component response regulator, GGDEF domain protein [Vibrio fischeri ES114] Length = 299 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 21/170 (12%) Query: 106 IDCLSGLLNHSAF---ISSLGSYNEKL----SIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ LLN F + + + +++L S++ FDID+FK NDN+GH GD+V+ + Sbjct: 135 LDGLTNLLNRRMFDFDLENRWAESQRLQANFSLIMFDIDHFKLYNDNYGHSAGDEVLVRV 194 Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 + L+ V R GGEEF + ++ A LR+ I + +NI+ S H Sbjct: 195 AKALMKTLQRKTDRVYRYGGEEFILIQFDTDLEQLRQTAELLRQCIYD--LNITHDFSFH 252 Query: 218 --ITISAGI----AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I+IS G AE+ +PI ++ DQ LY AKK GRN C S I Sbjct: 253 KRISISVGATLINAEQI--QPIPYLLEITDQQLYKAKKQGRN---CVSTI 297 >gi|27366819|ref|NP_762346.1| response regulator [Vibrio vulnificus CMCP6] gi|320158703|ref|YP_004191081.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio vulnificus MO6-24/O] gi|27358386|gb|AAO07336.1|AE016809_98 Response regulator [Vibrio vulnificus CMCP6] gi|319934015|gb|ADV88878.1| diguanylate cyclase (GGDEF domain) with PAS/PAC sensor [Vibrio vulnificus MO6-24/O] Length = 338 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 10/135 (7%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGS 187 +S++ FDID+FK+ ND FGH GD+ + +++ + + + R+GGEEFA + Sbjct: 196 ISMIIFDIDHFKKYNDTFGHQQGDECLRMIAEAIRSMKLRCLDKIARIGGEEFAVILPET 255 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEP-IST----IIYRAD 241 + A +AN +R IE I S ++ ++T S G+ C P I T ++ +AD Sbjct: 256 EMEGAKHVANRIRTTIEELSITHSHHATLPYVTASLGV---CSIVPEIDTNPRLLLKKAD 312 Query: 242 QALYVAKKSGRNRVV 256 +ALY AK++GRNR+ Sbjct: 313 EALYRAKRTGRNRIA 327 >gi|331009696|gb|EGH89752.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 712 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131 ++++ + S++++L Y ++ + + D L+GLLN ++ ++ L + Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426 Query: 248 KKSGRNR 254 K++GR + Sbjct: 427 KRAGRQQ 433 >gi|326315092|ref|YP_004232764.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371928|gb|ADX44197.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 495 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 18/205 (8%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 ++PF LE L +S+ +S L+ I+ ++ ++ + +++ D L+GL N Sbjct: 278 MSPFLKLEV-------LYAVSVLMSALVSIIAVKVVASRVVTP--LEDVAQKDALTGLAN 328 Query: 115 HSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 F + L + L S++ D+D FK +ND +GH GD V+ + ++ + Sbjct: 329 RRTFEARLQRAEQDLQRSGTGFSVMLMDLDKFKFVNDTYGHDAGDVVLKEAASRIQKIIR 388 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-E 226 + RLGG+EFA Q + +A + +++ I + G + + S GIA Sbjct: 389 ASDTLARLGGDEFAILVRTDDPQTLSHIATAIVEVVRQP-IPLKPGLAAEVGTSIGIAFA 447 Query: 227 RCHKEPISTIIYRADQALYVAKKSG 251 H + +++ ADQA+Y AK+ G Sbjct: 448 PGHSRHGAEVVHCADQAMYTAKRRG 472 >gi|262166357|ref|ZP_06034094.1| GGDEF family protein [Vibrio mimicus VM223] gi|262026073|gb|EEY44741.1| GGDEF family protein [Vibrio mimicus VM223] Length = 505 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 20/241 (8%) Query: 37 IFIATVIFIANIFLFYIGLTPFYGLEYILVE----NLSLVIISITISLLLGYISGSI--- 89 +F ++V+++ N+++ + P +L + + S IS + + +I Sbjct: 265 LFFSSVMYVVNLWVVVTLIKPITAANQVLQQFKTSGGKMPDASTFISAEMKEFASTINHI 324 Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIND 144 + +L S + S D L+ + N L Y L + DIDYFK ND Sbjct: 325 VTQLDESQQVLRWQSEHDPLTRISNRRYLEKQLKGYLSDRPCRYLVLNLIDIDYFKPFND 384 Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202 NFGH GD+ + ++ L + F V R GGEEF SE +A A + K+ Sbjct: 385 NFGHLAGDEALCSVAQALQAIEFDGEKIVTRFGGEEFCVVLASDSELDAEQFAQQIHTKV 444 Query: 203 IENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 E + N ++T+S G I+ R + ++ ++AD ALY AK+SGRNR V Sbjct: 445 AELAIANPQDSDFQYLTVSIGGVYAISPRM--DAYLSLFHQADMALYEAKESGRNRYVVR 502 Query: 259 S 259 S Sbjct: 503 S 503 >gi|291614799|ref|YP_003524956.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like metal-binding domain [Sideroxydans lithotrophicus ES-1] gi|291584911|gb|ADE12569.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like metal-binding domain [Sideroxydans lithotrophicus ES-1] Length = 499 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 15/159 (9%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N L L++ + D+D FKQ+ND GH GD V+ ++ Sbjct: 340 DALTGLPNRRLLQDRLEQALTRSKRGGRMLAVCYLDLDGFKQVNDTLGHDAGDDVLRLIA 399 Query: 160 DQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 +LV V V RLGG+EF L E +L L+ I + I+ G Sbjct: 400 GRLVKVLRGEDTVVRLGGDEFVLLLGDLDGEENVVQLLTRLLQDIAQPMSIH---GSRAQ 456 Query: 218 ITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 +T S G+ R H EP ++ AD+A+ AK+ G++R Sbjct: 457 VTASIGVTFYPRDHSEP-EVLLKHADEAMLAAKREGKSR 494 >gi|239831061|ref|ZP_04679390.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239823328|gb|EEQ94896.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 707 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 9/163 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSL---GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R++ ++ D L+GL N + F + SL G +E ++ + DID+FK IND+ GH G Sbjct: 266 ERMAHIAMHDSLTGLPNRAYFAHHVESLLKKGGDSEPFALFYLDIDHFKNINDSIGHQAG 325 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ ++ +L + F+ RLGG+EFA + + A+ A+ + ++S + Sbjct: 326 DQLLQEVARRLKQITTPDEFIARLGGDEFAIVYRSGTLGQIAMFADRVLSAFQDSFKLV- 384 Query: 212 SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 G S +T S GI++ H + ++ AD ALY +K GR Sbjct: 385 -GNSEFVTCSMGISQAPLHGDNPDALMRNADLALYASKSGGRR 426 >gi|254502205|ref|ZP_05114356.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] gi|222438276|gb|EEE44955.1| GGDEF domain protein [Labrenzia alexandrii DFL-11] Length = 513 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 21/209 (10%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSY 125 L ++ IS+++ G + L S R + D L+GL N F L G Sbjct: 298 LAVLIAAISVIVARRIGRLSSTLEQSERRNHYFAHHDSLTGLPNRHHFSDRLAYALDGLP 357 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + +++ D+D FK +ND GH GD V+ + +L + VGR+GG+EF L Sbjct: 358 DNGFAVIACDLDKFKPVNDTHGHEAGDIVLRVTASRLQDIISDKGVVGRIGGDEFVLLLL 417 Query: 186 GSSEQEA------AILANDLRKIIENSQINISSGPSIHITIS--AGIAERCHKEPISTII 237 +Q ILA + I N + ++S G S+ I ++ +G++E+ +I Sbjct: 418 HHRDQAELQAIADKILATVAKPIKFNPEQSVSIGISLGIALAPDSGMSEKH-------LI 470 Query: 238 YRADQALYVAKKSGRNRVVCFSDIENNTC 266 AD ALY+AK +GRN F+ E +T Sbjct: 471 RAADTALYLAKDAGRN-TYAFAHTEPDTA 498 >gi|193215431|ref|YP_001996630.1| diguanylate cyclase/serine/threonine protein kinase [Chloroherpeton thalassium ATCC 35110] gi|193088908|gb|ACF14183.1| diguanylate cyclase and serine/threonine protein kinase with TPR repeats [Chloroherpeton thalassium ATCC 35110] Length = 611 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 9/178 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFK 140 +L++L + + + +R D L+GL N YN L + DID+FK Sbjct: 436 QLLEQLRVQTIALEKQTREDPLTGLYNRRYLTFLLLQEFERAKRYNSALGVAMADIDHFK 495 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND F H VGD+V+ ++ + V R GGEEF + +A + +R Sbjct: 496 NVNDTFSHQVGDEVLKIIAKIFIQNCRIIDTVARYGGEEFVFFFPETPLDKAVSASEKIR 555 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 K + N N S + +T+S G+ ++ AD+ LY AK +GRNR VC+ Sbjct: 556 KAVANYDWN-SVEKGLTVTVSIGVTANIDVPSHEKMLSLADEKLYEAKATGRNR-VCY 611 >gi|189424819|ref|YP_001951996.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] gi|189421078|gb|ACD95476.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] Length = 473 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 12/158 (7%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID LSGL N+ I Y+ +LS+VF D+D FK +ND +GH VG ++ L Sbjct: 298 IDELSGLFNYRYLKVALEREIKRADRYSTQLSVVFLDLDNFKGVNDTYGHLVGSNLLKEL 357 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 L V R GG+E+ + + + A + +R++IE G I + Sbjct: 358 GALLKKSVREVDVVIRYGGDEYTIILVETGAETAHCVGERIRRMIEKHSFLSLEGYQIQL 417 Query: 219 TISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRN 253 T S G+A C+ E + ++ AD+A+Y K SG+N Sbjct: 418 TASLGLA--CYPEDTTGLEELLSMADKAMYAGKASGKN 453 >gi|91204585|emb|CAJ70813.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 505 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 6/146 (4%) Query: 113 LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 L HS I +N SI DID+FK ND +GH GD+++ L+ L V Sbjct: 215 LEHSKAIR----HNLHFSIAMIDIDHFKYYNDTYGHLFGDEILKKLAYILKSNVRYSDIV 270 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHK- 230 R GGEEFA G + A ++ + LR +++ + ++ G +TI+AG+A Sbjct: 271 SRYGGEEFAILLPGMDKNSATLVIDKLRDVVKRILSLEVAEGKVECVTITAGVAGYPEDG 330 Query: 231 EPISTIIYRADQALYVAKKSGRNRVV 256 + I+ AD+ LY+ K GRNRV+ Sbjct: 331 NSVKQILSVADKYLYIGKSCGRNRVI 356 >gi|27381656|ref|NP_773185.1| hypothetical protein bll6545 [Bradyrhizobium japonicum USDA 110] gi|27354825|dbj|BAC51810.1| bll6545 [Bradyrhizobium japonicum USDA 110] Length = 892 Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 33/179 (18%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I++L+ D L+GL N SA I + + +++ F D+D+FK +ND GH GD Sbjct: 439 IARLAYHDILTGLPNRAQLRHLISAAIDACPT-GSHVALAFLDVDHFKDVNDTLGHAAGD 497 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA------------AALGSSEQEAAILANDLR 200 +++ L+ +L G +GRLGG+EF A G +E AA L R Sbjct: 498 ELLIQLAQRLREQIGPEDILGRLGGDEFVVLLPHRDAEGAERVATGITEALAAPLRLGSR 557 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ ++ I IS P H I T++ +AD A+Y+AK++GR+ FS Sbjct: 558 QMQMSASIGISLYPD-------------HATDIDTLMQQADAAMYMAKQAGRSTHRLFS 603 >gi|89092662|ref|ZP_01165615.1| sensory box protein [Oceanospirillum sp. MED92] gi|89083174|gb|EAR62393.1| sensory box protein [Oceanospirillum sp. MED92] Length = 393 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 15/174 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIND 144 +L I+ R+ ++ D L+GL N I+S E +++F D+D FK +ND Sbjct: 220 KLAIANQRLEHIACHDTLTGLPNRLFLLNQLEVAIASSKRKKEHTAVLFIDLDNFKPVND 279 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203 ++GH VGD+ + +S+ + +GRL G+EF ++ A ++AN K+I Sbjct: 280 DYGHDVGDQCLKQVSEAMAKALRGSDILGRLAGDEFLVILTDIAAASHATVVAN---KLI 336 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNR 254 S GP + +A I H E I AD+A+Y AKK+G+N+ Sbjct: 337 HTLNKTYSVGP-YQFSFTASIGIYIHNEEDISAEECINLADKAMYQAKKAGKNQ 389 >gi|330942172|gb|EGH44823.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 397 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 40/196 (20%) Query: 85 ISGSILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSLGSYNEKLSIVFFDID 137 + G +L+ + + R L+R+ + ++ + H+ + ++I+ DID Sbjct: 221 LRGRLLQVQLMEFARTDGLTRLFNRRYQDEVMTSVWEHARNTPA------NVAIILLDID 274 Query: 138 YFKQINDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 +FK NDN+GHP GD + L Q G F R GGEE +G+ Q Sbjct: 275 HFKSYNDNYGHPQGDTCLRLLCQKVQQSAHEHGAVAF--RFGGEEVLVLMIGNPVQA--- 329 Query: 195 LANDLRKIIENSQINISS--------GPSIHITISAGIAERCHKEPIST---IIYRADQA 243 R++ E Q +++ G + +T+S G+A C P+++ +I AD A Sbjct: 330 -----REVAEALQTSVAELKLPHPVLGENALVTVSLGVA--CATAPMTSAENLIGAADNA 382 Query: 244 LYVAKKSGRNRVVCFS 259 LY AK++GRN VCF+ Sbjct: 383 LYAAKRAGRN-CVCFA 397 >gi|327188243|gb|EGE55463.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 663 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 12/164 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFKQINDNFGHPVGDKV 154 +LS D L+G+ N A L +E V F D+D+FK+ ND +GH GD+ Sbjct: 240 ELSNTDYLTGISNRRALDRRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRC 299 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + +++ L VV + +GR GGEEF + A LA +R +E I Sbjct: 300 LTVVANVLKAVVESSGGMIGRYGGEEFIVVMPAETPSIAMSLAERIRMEVEFLAIAHDER 359 Query: 214 P--SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 P S +T+S G+A E + I+ AD ALY AK SGRN Sbjct: 360 PDDSPIVTVSIGVAFTREDVGEKVERIVREADLALYNAKASGRN 403 >gi|325838541|ref|ZP_08166563.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1] gi|325490836|gb|EGC93138.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1] Length = 685 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 9/176 (5%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQIN 143 G + ++ ++ + L D +GLLN + + + + + + FDIDYFK IN Sbjct: 515 GVLYRQRYMD-KKTEYLKYTDYATGLLNRVGYENEMNKVLKRRQHFAFIIFDIDYFKSIN 573 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH +GDKVI ++ + + RLGG+EF + + + +++ + Sbjct: 574 DTYGHLIGDKVIEHVAYTIKSCTRKGDIICRLGGDEFVLCLMMDDIAKVCTVLEAIQEEM 633 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + ++ SI TI G + C E + + ADQALY +KK+GRN+ FS Sbjct: 634 FDYSEDLKVTASIGGTIYEG--QDCGME---MLYHEADQALYKSKKNGRNQFNIFS 684 >gi|291537819|emb|CBL10930.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis XB6B4] Length = 537 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 R+ + S D L+ L N L EK L++ DIDYFKQ NDN+GH G Sbjct: 360 RLLEKSETDALTRLANRFRLNDYLDQVFEKALSEQTPLAMEILDIDYFKQYNDNYGHQAG 419 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ I ++ QL ++ +F R GG+EF +E+ A LR+ I + I + Sbjct: 420 DECIKRIAKQLELMQNDMIFCARYGGDEFIILYQNMTEEAVRHAAEGLRQRIIDLGIQHA 479 Query: 212 SGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253 ++ I TIS GI K+ + ++ AD LY KK RN Sbjct: 480 YSKAMPIVTISQGICYDIPKDDTKSWDFLHAADAMLYQVKKKSRN 524 >gi|291537685|emb|CBL10797.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis M50/1] Length = 537 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 R+ + S D L+ L N L EK L++ DIDYFKQ NDN+GH G Sbjct: 360 RLLEKSETDALTRLANRFRLNDYLDQVFEKALSEQTPLAMEILDIDYFKQYNDNYGHQAG 419 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ I ++ QL ++ +F R GG+EF +E+ A LR+ I + I + Sbjct: 420 DECIKRIAKQLELMQNDMIFCARYGGDEFIILYQNMTEEAVRHAAEGLRQRIIDLGIQHA 479 Query: 212 SGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253 ++ I TIS GI K+ + ++ AD LY KK RN Sbjct: 480 YSKAMPIVTISQGICYDIPKDDTKSWDFLHAADAMLYQVKKKSRN 524 >gi|254508246|ref|ZP_05120370.1| ggdef domain protein [Vibrio parahaemolyticus 16] gi|219548863|gb|EED25864.1| ggdef domain protein [Vibrio parahaemolyticus 16] Length = 683 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 15/190 (7%) Query: 82 LGYISG---SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSI 131 LG+++ S+ K+ + +++QL+ D L+GL N S + LG +E ++ Sbjct: 217 LGHLAKTFHSLWKDREAAEVKLNQLAYYDSLTGLANRSLLLQLLGKAIDDSNVRSETGAL 276 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + D+D FK IND+ GH +GD ++ +S ++ R+GG+EFA ++ ++ Sbjct: 277 FYLDLDRFKTINDSLGHTIGDHLLKAISMRIEAWLKDDYTAARIGGDEFAILLPNTNAEK 336 Query: 192 AAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKK 249 A LA L +I N +I ++ ++S GIA I ++ +AD ALY AK Sbjct: 337 AHELAQQLLALISNP-YSIDDH-QLYCSMSVGIALFPSVGNTNID-VLRQADTALYRAKV 393 Query: 250 SGRNRVVCFS 259 SGRN+ + Sbjct: 394 SGRNKYTFYE 403 >gi|209884076|ref|YP_002287933.1| diguanylate cyclase [Oligotropha carboxidovorans OM5] gi|209872272|gb|ACI92068.1| diguanylate cyclase [Oligotropha carboxidovorans OM5] Length = 493 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R++QL+ D L+G+ N F + G LS++ D D+FK ND FGH G Sbjct: 320 QRLAQLATTDALTGIDNRRRFDERMLDEWRRGWQKLPLSLLMIDADHFKTFNDLFGHQEG 379 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D+V+ ++ + P R GGEEFA + +A +A ++R +E Sbjct: 380 DQVLVRIAKSIAQSSRRPADCAARYGGEEFALLLPDTELDDAMRIAEEIRTRVER----- 434 Query: 211 SSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGRNRVV 256 S T+S G+A C ++ +I AD+ALY AK+ GRNR V Sbjct: 435 LSTEKWATTVSIGVA--CVVPDMAGSSRNLIEAADKALYQAKEQGRNRCV 482 >gi|163815429|ref|ZP_02206802.1| hypothetical protein COPEUT_01592 [Coprococcus eutactus ATCC 27759] gi|158449066|gb|EDP26061.1| hypothetical protein COPEUT_01592 [Coprococcus eutactus ATCC 27759] Length = 769 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 11/176 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLS--IVFFDIDYFKQI 142 L E+ ++ LS D L+G+ N F+ + Y N L ++F D+D K + Sbjct: 595 LNEIHEKNELLNHLSTSDELTGIYNRRGFMERVEYYINIPSNHGLKAILLFADMDSLKVV 654 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND FGH GD + +++ L + FG +GR+GG+EF A A + N +++ Sbjct: 655 NDKFGHKDGDFALKNIANILSMSFGPHDVIGRIGGDEFVCFAFTGDPDYVAQVQNRIKQY 714 Query: 203 IENSQINISSGPSIHITISAGIAE-RCHKEP-ISTIIYRADQALYVAKKSGRNRVV 256 ++++N + G I +S G+ E C E I ++ +AD ALY K+ R ++ Sbjct: 715 --SAELNATCGKPYFIEMSVGVTEFTCDGEQTIEDLLSQADSALYTNKRYKRMSII 768 >gi|34557237|ref|NP_907052.1| components of sensory transduction system [Wolinella succinogenes DSM 1740] gi|34482953|emb|CAE09952.1| COMPONENTS OF SENSORY TRANSDUCTION SYSTEM [Wolinella succinogenes] Length = 407 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 14/199 (7%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHS----AFISSLGSYNEK-- 128 SIT+S L + G LK+ + + + +L+ D L+G+ N F LG + + Sbjct: 211 SITLSHRLLHKQGQELKK---ANDALKELAIKDGLTGVYNRRFFDLIFERELGRASRERR 267 Query: 129 -LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALG 186 + + DID+FK ND +GH GD+V+ ++ L + + + RLGGEEF A +G Sbjct: 268 AFTFIMIDIDHFKLYNDTYGHGEGDQVLKRVAKALDNTLERSSDYFFRLGGEEFCAFVMG 327 Query: 187 SSEQEAAILANDLRKIIENSQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQA 243 +E+++ L + + +E +I S+ P + I++ A + II +AD A Sbjct: 328 LNEEQSLALCKKMLQAVERLKIPHKKNSASPYVTISMGAICLVPTPQSEAKKIIEKADGA 387 Query: 244 LYVAKKSGRNRVVCFSDIE 262 LY AK GRN+ S E Sbjct: 388 LYNAKGWGRNQAAILSHHE 406 >gi|330886287|gb|EGH20188.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 712 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131 ++++ + S++++L Y ++ + + D L+GLLN ++ ++ L + Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426 Query: 248 KKSGRNR 254 K++GR + Sbjct: 427 KRAGRQQ 433 >gi|323529581|ref|YP_004231733.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Burkholderia sp. CCGE1001] gi|323386583|gb|ADX58673.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Burkholderia sp. CCGE1001] Length = 692 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 13/166 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 +I +L+ +D L+GL N + I + +I+F D+D FK IND+ GH Sbjct: 253 GQIVRLATLDTLTGLPNRATLTERIERAIHAARRQRSLFAILFMDLDGFKTINDSLGHSA 312 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA--LGSSEQEAAILANDLRKIIENSQI 208 GD+V+A + +L++ V RLGG+EF + L S AA+ L ++ ++ Sbjct: 313 GDQVLAAFAQRLLICVRAGDTVARLGGDEFVVLSENLASRMDAAALAEGVLERMRRDTWA 372 Query: 209 NISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 + S P + + S GIA + + T++ AD A+Y AK++GR+ Sbjct: 373 D--SQP-LQVMPSIGIALFPEDGDSVDTLLKHADAAMYEAKRAGRS 415 >gi|260768107|ref|ZP_05877041.1| GGDEF family protein [Vibrio furnissii CIP 102972] gi|260616137|gb|EEX41322.1| GGDEF family protein [Vibrio furnissii CIP 102972] Length = 486 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 9/159 (5%) Query: 103 LSRIDCLSGLLNHSAFIS--SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 L+ D ++GLLN + ++ LS+ DID FK IND +GH VGD VI ++ D Sbjct: 331 LASRDPMTGLLNRRGMEEFLQVKQHSRYLSVAVLDIDNFKSINDTYGHDVGDDVICYVGD 390 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINISSGPSIHIT 219 Q+ V R GGEEF Q A++ I +S + +G T Sbjct: 391 QIECNIRETDAVARFGGEEFVVYLTSPDPLQIEAVMQRVKEAITRDSTRVVPNG----FT 446 Query: 220 ISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IS GI E + AD+ LY+AK +G++++V Sbjct: 447 ISGGIQVIESHQEWDFDKQFKLADEKLYLAKTTGKDKLV 485 >gi|257482481|ref|ZP_05636522.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320321946|gb|EFW78042.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320330948|gb|EFW86922.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330872180|gb|EGH06329.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330984626|gb|EGH82729.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 712 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131 ++++ + S++++L Y ++ + + D L+GLLN ++ ++ L + Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426 Query: 248 KKSGRNR 254 K++GR + Sbjct: 427 KRAGRQQ 433 >gi|187780166|ref|ZP_02996639.1| hypothetical protein CLOSPO_03762 [Clostridium sporogenes ATCC 15579] gi|187773791|gb|EDU37593.1| hypothetical protein CLOSPO_03762 [Clostridium sporogenes ATCC 15579] Length = 419 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 21/171 (12%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPV 150 ++ Q++ D L+ L N ++F+ L S ++ L+I+F D+D FK++NDNFGH Sbjct: 250 DKTKQMAYFDSLTELPNRNSFLKQLEHEIKLSRKKQTILAIMFLDLDKFKEVNDNFGHCT 309 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKI------I 203 GDK++ ++ ++ + + R GG+EF + E++ LA D+ ++ I Sbjct: 310 GDKLLWQVAKRVKNTISSKDLIARFGGDEFTILIRDIAYEKQVEDLARDIIEVFREPIYI 369 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 E +NI + I G + +I +AD+A+Y AKK G N+ Sbjct: 370 EGIYVNIKTSIGISFFPKDG-------DTSQELIKKADKAMYDAKKRGSNK 413 >gi|258623478|ref|ZP_05718481.1| GGDEF family protein [Vibrio mimicus VM573] gi|258584293|gb|EEW09039.1| GGDEF family protein [Vibrio mimicus VM573] Length = 412 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 23/170 (13%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+ + A L +K ++ D+D+FK+ ND +GH GD V+ ++ +L ++ Sbjct: 241 DPLTQIPGRQALDQDLKHIGKKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLRLIE 300 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS-------- 215 G V R GGEEF+ E + LR+ IE+ ++ N S P Sbjct: 301 GKAR-VYRYGGEEFSIIYRNKLADEVLPFIDALRQDIESYELVIRNSSKRPKSDAEGAKK 359 Query: 216 ---------IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ITIS G+ + + H+ P + + AD ALY AK++GRN V Sbjct: 360 RTRKSNSDIVTITISIGVCDSQLHRNP-NEALKAADSALYKAKQAGRNCV 408 >gi|228924095|ref|ZP_04087371.1| Sensory box protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835585|gb|EEM80950.1| Sensory box protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 864 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + +++F D+D FK+IND Sbjct: 425 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDAAVIFLDLDRFKKINDR 484 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 485 LGHDVGDLLLIEVAKRLRSCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 544 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 545 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 598 >gi|255305919|ref|ZP_05350091.1| putative signaling protein [Clostridium difficile ATCC 43255] Length = 1181 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 12/168 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++ + + D L+ L N A S + Y K +++ DID FK INDN GH GD Sbjct: 704 KLKERAEKDPLTDLYNKKASQSLIEEYITLDKKRKGALMIIDIDDFKGINDNLGHLYGDA 763 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISS 212 V++ +++ L+ +F VGR+GG+EF SE I A +L KI E S + Sbjct: 764 VLSEIANDLINLFRATDIVGRIGGDEFIVFIKDISETRDIINKAEELVKIFERSF--LGK 821 Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 G + I++S GIA+ ++R AD ALY AK G+N C++ Sbjct: 822 GRNYKISLSVGIAKFPQDGMDYMTLFRNADIALYSAKGKGKN---CYT 866 >gi|153835031|ref|ZP_01987698.1| ggdef family protein [Vibrio harveyi HY01] gi|148868508|gb|EDL67607.1| ggdef family protein [Vibrio harveyi HY01] Length = 328 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 86/169 (50%), Gaps = 21/169 (12%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKL------SIVFFDIDYFKQINDNFGHPVGDKVIA 156 LS D ++G LN + L E +I DID+FKQ+ND +GH VGD+VI Sbjct: 148 LSTRDSMTGALNRGQLEAFLQRALEDKRLGKASTIAVIDIDHFKQVNDLYGHDVGDEVI- 206 Query: 157 FLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +Q V + + RLGG+EF G SEQ A + +++ + + Sbjct: 207 ---NQTVAILNDYSREYDLLFRLGGDEFLLLFEGLSEQTAQFMMSNICDKVRSKHF---- 259 Query: 213 GPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFS 259 H+++S G+AE C E + ++ RAD ALY AK++GR++VV S Sbjct: 260 ARYAHVSLSVGVAE-CLLEDDTPDLWLKRADIALYDAKQNGRDQVVVAS 307 >gi|120608925|ref|YP_968603.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] gi|120587389|gb|ABM30829.1| diguanylate cyclase [Acidovorax citrulli AAC00-1] Length = 495 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 18/205 (8%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN 114 ++PF LE +L S+ +S ++ ++ ++ ++ + +++ D L+GL N Sbjct: 278 MSPFLKLE-------ALFAFSVLMSAVISIVAVKVVASRVVTP--LEDVAQKDALTGLAN 328 Query: 115 HSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFG 167 F + L + L +++ D+D FK +ND +GH GD V+ + ++ + Sbjct: 329 RRTFDARLLRAEQDLQRSGTGFAVMLMDLDKFKSVNDTYGHDAGDVVLKEAAARIQKIIR 388 Query: 168 TPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-E 226 + + RLGG+EFA Q + +A + +++ I + G + + S GIA Sbjct: 389 SSDTLARLGGDEFAILVRTDDPQTLSHIATAIVEVVRQP-IPLQPGLAAEVGTSIGIAFA 447 Query: 227 RCHKEPISTIIYRADQALYVAKKSG 251 H + +++ ADQA+Y AK+ G Sbjct: 448 PAHSRRGAEVVHWADQAMYTAKRRG 472 >gi|87120083|ref|ZP_01075979.1| sensory box/GGDEF/EAL domain protein [Marinomonas sp. MED121] gi|86164785|gb|EAQ66054.1| sensory box/GGDEF/EAL domain protein [Marinomonas sp. MED121] Length = 762 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 11/184 (5%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 SI+ + + RI +L+ D L+GL + + I S NE ++++ D+D FK Sbjct: 318 SIIMDREQNLKRIKELAYTDELTGLSSRAQLYLSLEKRIKSAKESNEHFTLIYLDLDNFK 377 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 IND+ GH GD ++ ++ +L+ + + RLGG+EF L + EQ A + Sbjct: 378 NINDSLGHDAGDTLLQMIATRLINITSHTHTIARLGGDEF-CIILDTQEQAKAGIIKFAH 436 Query: 201 KIIEN-SQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +E SQ S T S GIA+ E + +++ AD ALY AK G+N V F Sbjct: 437 ACLEGISQPVFLSSRRFIPTCSLGIAKYPTDGEDLPSLLKAADTALYAAKDRGKN-VYAF 495 Query: 259 SDIE 262 +E Sbjct: 496 YQVE 499 >gi|332532108|ref|ZP_08407991.1| GGDEF/EAL domain protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038449|gb|EGI74893.1| GGDEF/EAL domain protein [Pseudoalteromonas haloplanktis ANT/505] Length = 467 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 I +LS D L+ LLN +AF+ + E +++F D+D FKQIND+ GH VGDK Sbjct: 39 EIYRLSNTDPLTNLLNRTAFLKNANRQLADNPQEPFALLFVDLDGFKQINDSLGHKVGDK 98 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ ++ ++ V +F R GG+EF A + E A+ + + I Sbjct: 99 VLKEIARRISNVCNQQLFKCRWGGDEFLILATYQKQAELIEFADRVLQSIGAEHETYKYQ 158 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + TI + H +T+I AD A+Y K+ + + ++D Sbjct: 159 KWVSATIGIAMYPE-HGSDFNTLIRSADTAMYHQKRMAKGNINIYND 204 >gi|291288785|ref|YP_003505601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Denitrovibrio acetiphilus DSM 12809] gi|290885945|gb|ADD69645.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Denitrovibrio acetiphilus DSM 12809] Length = 1019 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 12/163 (7%) Query: 107 DCLSGLLNHSAFISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N F L K + I+F D+D FK +ND GH GDKV+ +++ Sbjct: 597 DSLTGLPNRIYFTDKLAEQIPKNHLPSCIGIMFLDLDRFKNLNDTLGHTTGDKVLEIIAE 656 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIENSQINISSGPSIHI 218 ++ P R G+EF G Q+A I + N ++I E I G + I Sbjct: 657 RIRNTVHGPDMAARFSGDEFTVFFTGVKNQDALIEMVKNVTKRISEPLHI---QGYELFI 713 Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 SAGI+ S +I A+ A+Y AK++G+N + ++D Sbjct: 714 QTSAGISVYPDNGLTASELIKNAEIAMYQAKQTGKNNIQLYTD 756 >gi|283833287|ref|ZP_06353028.1| sensory box/GGDEF family protein [Citrobacter youngae ATCC 29220] gi|291070924|gb|EFE09033.1| sensory box/GGDEF family protein [Citrobacter youngae ATCC 29220] Length = 642 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 11/160 (6%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N F +L N+ ++++ FD+D FK++ND +GH GD ++ +S Sbjct: 228 DSLTDMNNRQFFWGNLNQKIEIAEKNNDSVTVMLFDLDRFKEVNDTYGHDAGDILLRQIS 287 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D+L + T + RLGG+EFA + G +E +A LA + I SQ I+IT Sbjct: 288 DRLTAMSLTSDTLYRLGGDEFAFLSSGLTESQAVSLAQKICDFI--SQPYTIYNTVINIT 345 Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF 258 GI E S +Y+ AD ALY AK G ++ F Sbjct: 346 TCVGIV-ISETERRSDYLYKFADLALYEAKNEGSGKIKVF 384 >gi|262372608|ref|ZP_06065887.1| GGDEF domain-containing protein [Acinetobacter junii SH205] gi|262312633|gb|EEY93718.1| GGDEF domain-containing protein [Acinetobacter junii SH205] Length = 409 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 EL ++S LS+ D L+GL N L + ++ L+I+ DID+FK ND Sbjct: 222 ELMRQAQQLSILSQQDALTGLANRRYLDEVLENEWKRATRHEMPLTIMMIDIDFFKLYND 281 Query: 145 NFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH GD+ + ++ L + + R GGEEF + +A I L ++I Sbjct: 282 TLGHIQGDQCLRRIAIMLGSIASRSGDLAARYGGEEFLLLFSMTDRDQAIIQVQRLMELI 341 Query: 204 ENSQI-NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 N I + S S H+TIS G+A + +S + +AD ALY+AK +GRN+ Sbjct: 342 RNIGIVHPRSNISKHVTISVGVATITPTLNDSLSEFVSQADHALYIAKSNGRNQ 395 >gi|260770499|ref|ZP_05879432.1| periplasmic/7TM domain sensor diguanylate cyclase [Vibrio furnissii CIP 102972] gi|260615837|gb|EEX41023.1| periplasmic/7TM domain sensor diguanylate cyclase [Vibrio furnissii CIP 102972] Length = 612 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 14/168 (8%) Query: 106 IDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G+LN S S ++ +V D+D FK +ND +GH GD ++ L Sbjct: 439 VDSLTGILNRRGLNRYFETLKSRASSADDTAIVVLIDLDEFKPVNDQYGHEAGDMLLQTL 498 Query: 159 SDQLVVVFGTPMFVGRLGGEEFA---AAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + ++ +GRLGG+EF A G S+ E + L I + I + S Sbjct: 499 AQRMRSRLPEHAGLGRLGGDEFVALFAGQTGRSKHELEQIGVQLLAAI-SEPIALHSDVV 557 Query: 216 IHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSDI 261 +H+ S G++ C P S T + AD A+Y K +G+N VV SD+ Sbjct: 558 VHVQASIGVS-LCTIAPHSFATALRAADTAMYDIKHNGKNGVVVVSDV 604 >gi|260683961|ref|YP_003215246.1| putative signaling protein [Clostridium difficile CD196] gi|260210124|emb|CBA64267.1| putative signaling protein [Clostridium difficile CD196] Length = 602 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 10/131 (7%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+DYFK+ ND +GH GD + ++ + MF+ R GGEEF ++ +++ I Sbjct: 479 DVDYFKEYNDTYGHYNGDIALKNITIIIKKYLKKDMFMIRYGGEEFLILSVCKDYKKSKI 538 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252 L +I++ N ++T+S GI + C I II AD+ALY AK+SGR Sbjct: 539 FGRKLCRIVKKFLNN-------NLTVSIGI-DTCKNSSIDIREIIENADKALYKAKESGR 590 Query: 253 NRVVCFSDIEN 263 NR + + D +N Sbjct: 591 NRCLHYHDFKN 601 >gi|261855741|ref|YP_003263024.1| diguanylate cyclase with PAS/PAC sensor [Halothiobacillus neapolitanus c2] gi|261836210|gb|ACX95977.1| diguanylate cyclase with PAS/PAC sensor [Halothiobacillus neapolitanus c2] Length = 432 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 25/167 (14%) Query: 107 DCLSGLLNHSAFISSL-GSYNE----------KLSIVFFDIDYFKQINDNFGHPVGDKVI 155 D L+GL N + L ++N+ +LS++ D+D+FK+IND +GH GD+V+ Sbjct: 269 DSLTGLFNRRRGMELLIETFNKTVKRQPNAKVELSLLVIDLDFFKRINDRYGHLEGDEVL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ R GGEEF A G++ EA A ++R+ N + P Sbjct: 329 RITGSLILKSLPDDAVAFRWGGEEFLVALPGTALAEARERAENIRQAFVNQEWQ----PG 384 Query: 216 IH---ITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I +T+S GIA E H + +I AD+A+Y+AK+ GRNRV Sbjct: 385 IEGECVTVSIGIAHYPEEATH---LLELIAAADKAVYLAKRLGRNRV 428 >gi|13488377|ref|NP_109384.1| regulatory components of sensory transduction system [Mesorhizobium loti MAFF303099] gi|14028131|dbj|BAB54723.1| regulatory components of sensory transduction system [Mesorhizobium loti MAFF303099] Length = 354 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 14/177 (7%) Query: 91 KELFISYN-RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 + IS N + +L+RID L+GL N F L + ++ LS++ D D FK+ Sbjct: 175 QRQLISANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFRAQSPLSLLMIDADNFKRY 234 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD+V+ ++ + G R GGEEF + + +E++ +A L + Sbjct: 235 NDTYGHMAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLLEESSAIAEQLVQ 294 Query: 202 IIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++NI GP +TIS G+A E + + AD AL+ AK GRNRV Sbjct: 295 GVR--ELNIPHGPD-RVTISVGVATTVPNENETPNDFVNAADLALFRAKSEGRNRVA 348 >gi|27366009|ref|NP_761537.1| GGDEF domain-containing protein [Vibrio vulnificus CMCP6] gi|37679726|ref|NP_934335.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|320156523|ref|YP_004188902.1| GGDEF domain-containing protein [Vibrio vulnificus MO6-24/O] gi|27362209|gb|AAO11064.1| GGDEF domain protein [Vibrio vulnificus CMCP6] gi|37198471|dbj|BAC94306.1| GGDEF family protein [Vibrio vulnificus YJ016] gi|319931835|gb|ADV86699.1| GGDEF domain [Vibrio vulnificus MO6-24/O] Length = 644 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 11/172 (6%) Query: 94 FISYNRISQLSRIDCLSGLLNHSAFI------SSLGSYNEKLSIVFFDIDYFKQINDNFG 147 F++ + + S++D ++G LN + I SS + K ++ FD+D FK +ND FG Sbjct: 468 FLTSQQKRKQSQLDMMTGALNRGSAIKAIKQASSAKRPHSKNVLILFDLDNFKWVNDQFG 527 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 HP GDK++ + L+ +GRLGGEEF + + L +I S+ Sbjct: 528 HPTGDKLLITICKTLLGELQRGDILGRLGGEEFILLLREVEDIDVQFRVEKLHDLI--SE 585 Query: 208 INISSGPSIHITISAGIAERCHKEPISTI--IYR-ADQALYVAKKSGRNRVV 256 ++S + ++ SA + +S +Y DQALY AKK+GRN ++ Sbjct: 586 CRVASPSNTAVSASASFSFLATPRALSDFDELYSILDQALYQAKKNGRNTII 637 >gi|154246429|ref|YP_001417387.1| diguanylate cyclase [Xanthobacter autotrophicus Py2] gi|154160514|gb|ABS67730.1| diguanylate cyclase [Xanthobacter autotrophicus Py2] Length = 429 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 29/206 (14%) Query: 73 IISITISLLLGYISGSILKELFI-------SYNRISQLSRIDCLSGLLNHSAFISSL--- 122 +I+ + +GY + S + EL + +S ++ D L+GL N F ++ Sbjct: 225 VIARRTASGIGYFTHSDITELKRQQAALERALAELSAIAATDVLTGLANRRGFEKAISAA 284 Query: 123 ----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGG 177 G ++++ D+D+FK IND FGH GD+ + ++D + V R GG Sbjct: 285 WHACGVAGTPVAVIIIDLDHFKAINDRFGHAAGDECLRRIADAVRSSVTRADDLAARHGG 344 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH-----ITISAGI---AERCH 229 EEFA ++ +EA + +R+ + + +H +T+S GI C Sbjct: 345 EEFAILLPNATAEEALAIGQGIRR-----SVRVEPWAQVHPDLNRLTVSMGICAVKSACE 399 Query: 230 KEPISTIIYRADQALYVAKKSGRNRV 255 + I + AD+ALY AKK GR+R+ Sbjct: 400 VD-IDLAMRHADEALYRAKKRGRDRI 424 >gi|95931073|ref|ZP_01313800.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95132882|gb|EAT14554.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 353 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 26/203 (12%) Query: 60 GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFI 119 GL +L+E L+L +++ L ++ ++ ++ L+ +D L+GLLN Sbjct: 152 GLNTVLLERLAL-----KVAICLSNVT---------AHEKLRSLACLDPLTGLLNRRVLG 197 Query: 120 SSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 +L Y LS+VF D++ FKQ+NDN GH GD ++ +L+D L T V Sbjct: 198 QALQREFDRACRYETALSVVFIDLNDFKQVNDNHGHDAGDLLLQYLADCLQRYSRTTDLV 257 Query: 173 GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHITISAGIAERCHKE 231 R G+EF + + A +L L K E S+ + G + + +++S G+A + Sbjct: 258 ARYAGDEFVLVLPQTDGENAGLLMERLDK--ELSRQGMLYGDALVAVSLSYGVASLPDGD 315 Query: 232 PIS--TIIYRADQALYVAKKSGR 252 S ++ +ADQALY K+ + Sbjct: 316 VSSPEQMLKKADQALYRHKRRSK 338 >gi|330812186|ref|YP_004356648.1| GGDEF domain membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380294|gb|AEA71644.1| putative GGDEF domain membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 429 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 116/263 (44%), Gaps = 38/263 (14%) Query: 26 TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY--------GLEYILVENLSLV-IISI 76 +M + + +F A + +A + ++ P + GL ++L + L ++I Sbjct: 164 AWMSLIQLSYPMFAAAFLLLA--WQYWRNPRPLHAAQLVGVLGLFWMLPKTFILPFTLNI 221 Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDI 136 S ++ I+ ++ E + Q++ D L+GL A + + D+ Sbjct: 222 MCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPGRRALNERMQRLGRNYVLAMSDV 274 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+ ND GH VGD+V+ ++ +L + G R GGEEFA G + E Sbjct: 275 DHFKKFNDTHGHDVGDQVLRLVASKLSKIGGG-GRAYRYGGEEFALVFAGKTIDECMPHL 333 Query: 197 NDLRKIIENSQI---NISSGP----------------SIHITISAGIAERCHKEPISTII 237 +R+ IE I N S P S+ +T+S G+AER + ++ Sbjct: 334 EVIRQSIETYAIQLRNPDSRPQDDQQGRQRRSGAGASSVSVTVSIGVAERLEQRTPEEVL 393 Query: 238 YRADQALYVAKKSGRNRVVCFSD 260 ADQALY AK +GRN V+ F Sbjct: 394 KSADQALYNAKGAGRNCVIAFGQ 416 >gi|317052164|ref|YP_004113280.1| diguanylate cyclase [Desulfurispirillum indicum S5] gi|316947248|gb|ADU66724.1| diguanylate cyclase [Desulfurispirillum indicum S5] Length = 533 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 11/158 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F L + ++++ FDID+FK++ND +GH GD V+ ++ Sbjct: 366 DPLTGISNRLQFTRVLDDEAARKRRNSTPMALIMFDIDHFKRVNDTWGHNTGDAVLKEIA 425 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + R GGEEF + + A I+A LR+ IE I ++T Sbjct: 426 RIVSAGIRASDVFARWGGEEFVLLLRDNDCKAARIVAEKLRQQIEWHPFPIIG----NLT 481 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S G+ + + + RAD+ALY +K +GRN+V C Sbjct: 482 CSFGVTAWQPDDDEAGFLARADKALYASKAAGRNQVSC 519 >gi|237799947|ref|ZP_04588408.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022802|gb|EGI02859.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 747 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 6/136 (4%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 E+ +++F D+D FK +ND+ GH GD+++ ++++L + + R+GG+EFA +G Sbjct: 346 ERATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRSNDVLARIGGDEFAILLMG 405 Query: 187 SSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIAERC--HKEPISTIIYRADQA 243 + E A+ + +I+ I G I I+ S GI C H +P ++ AD A Sbjct: 406 KDQPETAVRMAE--RIVSQLHAAIQIEGQDIFISCSIGIVTACDSHSKP-EDLLRDADVA 462 Query: 244 LYVAKKSGRNRVVCFS 259 +Y AKK GR R F+ Sbjct: 463 MYSAKKQGRGRWSIFN 478 >gi|18309786|ref|NP_561720.1| sensory box protein/histidinol phosphate phosphatase family protein [Clostridium perfringens str. 13] gi|18144464|dbj|BAB80510.1| hypothetical protein [Clostridium perfringens str. 13] Length = 624 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 20/170 (11%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 KE+ I +R++ D L+ + N F S ++K +++F D+D+FK+IN Sbjct: 182 KEMEIELDRMANY---DELTNIPNMRLFFKSFRNTINESKKMDKKFAVLFIDLDWFKEIN 238 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA-----AILAND 198 DN+GH VGD+V+ ++ +GR+GG+EFAA S++E + N Sbjct: 239 DNYGHNVGDEVLVCAVKRIYKCLRKGDILGRIGGDEFAAILKDISDREEIEKIVKDIQNS 298 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK 248 LRK I+ + + SI ITI E+ I ++ +D+A+Y K Sbjct: 299 LRKRIKIGDVTCNIDSSIGITIFPEDGEK-----IEVLMRNSDKAMYKVK 343 >gi|27375475|ref|NP_767004.1| hypothetical protein blr0364 [Bradyrhizobium japonicum USDA 110] gi|27348612|dbj|BAC45629.1| blr0364 [Bradyrhizobium japonicum USDA 110] Length = 887 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 16/171 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 RI+ ++ D L+ L N L + + +I++ D+D FK +ND+ GH VGD Sbjct: 458 RIAHMAHYDALTDLPNRVLMRGHLERRVAELAEGKPFAILYIDVDEFKGVNDSLGHEVGD 517 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-----AAILANDLRKIIENSQ 207 +++ ++++L V RLGG+EFA G+ +Q A + N LR + Sbjct: 518 ELLRQVANRLRACVSGNDLVARLGGDEFAIVKAGTRDQAELTALAETILNALRAPVNCKG 577 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + + SI I I+ H + + ++ RAD A+Y AK GR F Sbjct: 578 QEVPTDASIGIAIAPD-----HGDNLDDLLKRADLAMYAAKSEGRRTFRVF 623 >gi|332298949|ref|YP_004440871.1| diguanylate cyclase [Treponema brennaborense DSM 12168] gi|332182052|gb|AEE17740.1| diguanylate cyclase [Treponema brennaborense DSM 12168] Length = 375 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 76/138 (55%), Gaps = 8/138 (5%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 ++++ FDID+FK+ ND +GH GD V+ ++ + R GGEEF + Sbjct: 224 VAVIMFDIDFFKRFNDTYGHACGDFVLQRVARIIQDGVRGQDLAARYGGEEFVVMLYNTD 283 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIA------ERCHKEPISTIIYRADQ 242 A + + +R++IE S + + +++TISAG + E+ + ++ ADQ Sbjct: 284 SNGAYKVGDRIRRVIEESDL-VYEDVHMNVTISAGFSVYDPGDEKNAAVTPTQLVELADQ 342 Query: 243 ALYVAKKSGRNRVVCFSD 260 ALY++K++GRNR + F+D Sbjct: 343 ALYLSKRNGRNR-ITFAD 359 >gi|303325870|ref|ZP_07356313.1| putative sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3] gi|302863786|gb|EFL86717.1| putative sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3] Length = 976 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 28/172 (16%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + + S+ D L+ L N AF + ++ +++F D+D FK +ND GH VGD Sbjct: 803 LERRSQRDSLTDLYNKQAFQEKVRRCLPVSKESGKESALLFVDLDNFKTLNDTLGHMVGD 862 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-- 210 K +A + L VF VGR GG+EF G I N LRK +E+ + + Sbjct: 863 KALAAVGKILSSVFHNADAVGRFGGDEFCVFVRG-------IPRNVLRKRVESLRTALRL 915 Query: 211 ---SSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAKKSGRNR 254 +G + ++ S G+ E ++E + RADQALY AK+SG++R Sbjct: 916 HFEENGQHVDLSSSIGVYLFDGNESSYEEALQ----RADQALYRAKQSGKDR 963 >gi|240145089|ref|ZP_04743690.1| response regulator [Roseburia intestinalis L1-82] gi|257202761|gb|EEV01046.1| response regulator [Roseburia intestinalis L1-82] Length = 537 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 R+ + S D L+ L N L EK L++ DIDYFKQ NDN+GH G Sbjct: 360 RLLEKSETDALTRLANRFRLNDYLDQVFEKALSEQTPLAMEILDIDYFKQYNDNYGHQAG 419 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ I ++ QL ++ +F R GG+EF +E+ A LR+ I + I + Sbjct: 420 DECIKRIAKQLELMQNDMIFCARYGGDEFIILYQNMTEEAVRHAAEGLRQRIIDLGIQHA 479 Query: 212 SGPSIHI-TISAGIAERCHKEPIST--IIYRADQALYVAKKSGRN 253 ++ I TIS GI K+ + ++ AD LY KK RN Sbjct: 480 YSKAMPIVTISQGICYDIPKDDTKSWDFLHAADAMLYQVKKKSRN 524 >gi|205374496|ref|ZP_03227292.1| hypothetical protein Bcoam_15506 [Bacillus coahuilensis m4-4] Length = 618 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 26/187 (13%) Query: 85 ISGSILKELFISYNRISQLSRIDCLSGLL--NH-SAFISSLGSYNEKLSIVFFDIDYFKQ 141 ++ S+L+E ++ ++ D L+ L NH FIS +EK +V DID FK+ Sbjct: 446 LTNSMLRE------KLEEMVITDHLTKLYSRNHLDEFISRSMLEDEKGCLVLVDIDNFKR 499 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEE----FAAAALGSSEQEAAILAN 197 +ND +GH VGD+VI +++ + R GGEE F ++G +E + N Sbjct: 500 VNDTYGHQVGDEVIVQVANLMSSTSKGKGLAARWGGEELAIYFPHLSIGEAEPYVESIIN 559 Query: 198 DLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 D +++ P +T+SAG++ ++ ++ ++AD ALY AK++G+N+ Sbjct: 560 D---------CPLATNPK--VTLSAGVSSWKKGFMYTEDSLFHKADTALYEAKRTGKNKY 608 Query: 256 VCFSDIE 262 V S +E Sbjct: 609 VKDSSLE 615 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] gi|133738226|emb|CAL61271.1| conserved hypothetical protein; putative PAS/PAC, EAL, GGDEF domains [Herminiimonas arsenicoxydans] Length = 710 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 11/169 (6%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + + Y +I F D+D FK IND+ GH VGD+++ + Sbjct: 290 DALTGLPNRTLLYDRMQQAVLHSARYGNLTAIAFLDLDQFKFINDSLGHQVGDELLKITA 349 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L V R GG+EF L S E +I R + E +Q +++G IT Sbjct: 350 QRLTSCLRESDTVARQGGDEF-VLLLTSQPSEESITHTMQRVLHEVAQPWMANGLEFRIT 408 Query: 220 ISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 S G+ C + T++ AD A+Y AK+ GRN F+ N+T Sbjct: 409 CSVGVT-LCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFATEMNDTA 456 >gi|94265727|ref|ZP_01289464.1| GGDEF [delta proteobacterium MLMS-1] gi|93453740|gb|EAT04116.1| GGDEF [delta proteobacterium MLMS-1] Length = 354 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147 + Y + + +R D L+GL N F +GS Y L+++ D+D FK++ND G Sbjct: 177 LEYEDLFEQARRDFLTGLANRRVFDERIGSLLESARRYQHPLTLLSMDLDCFKELNDTHG 236 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+ + ++ LV + T + R+GG+EF S + A ILA+ + + + Sbjct: 237 HAEGDRALQRVAATLVAMVRTSDLLVRMGGDEFLLVLPDSDARAAKILAHRICRAVGALH 296 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 S + I+I GI + + RAD+ALY AK G Sbjct: 297 FGASGNDKLGISI--GIVPWALDLALDDWLARADEALYRAKSVG 338 >gi|89896406|ref|YP_519893.1| hypothetical protein DSY3660 [Desulfitobacterium hafniense Y51] gi|89335854|dbj|BAE85449.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 515 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 14/160 (8%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 S ID +G N + + + +L +++F DID FK IND +GH GD ++ +++ Sbjct: 341 SSIDPQTGFFNKQYMLDYDKAESPELGNTALLFIDIDNFKSINDLYGHLAGDSILKSVAE 400 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP----SI 216 + G+ V R GG+EF + EA + A +R +++N + P + Sbjct: 401 CIRCSIGSEAQVIRFGGDEFVVIFANPGKDEAYLAAEAIR-----TKVNALNLPEHYGDL 455 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +++S G+AE + P+ +I +AD+A+Y AK G+NR + Sbjct: 456 TLSLSIGLAE--GRVPVRELITQADEAMYSAKSQGKNRTM 493 >gi|289624128|ref|ZP_06457082.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330865826|gb|EGH00535.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 712 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131 ++++ + S++++L Y ++ + + D L+GLLN ++ ++ L + Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GVDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426 Query: 248 KKSGRNR 254 K++GR + Sbjct: 427 KRAGRQQ 433 >gi|254975970|ref|ZP_05272442.1| putative signaling protein [Clostridium difficile QCD-66c26] Length = 613 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 10/131 (7%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+DYFK+ ND +GH GD + ++ + MF+ R GGEEF ++ +++ I Sbjct: 490 DVDYFKEYNDTYGHYNGDIALKNITIIIKKYLKKDMFMIRYGGEEFLILSVCKDYKKSKI 549 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252 L +I++ N ++T+S GI + C I II AD+ALY AK+SGR Sbjct: 550 FGRKLCRIVKKFLNN-------NLTVSIGI-DTCKNSSIDIREIIENADKALYKAKESGR 601 Query: 253 NRVVCFSDIEN 263 NR + + D +N Sbjct: 602 NRCLHYHDFKN 612 >gi|254457729|ref|ZP_05071157.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] gi|207086521|gb|EDZ63805.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] Length = 595 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 14/164 (8%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N F+ L Y+ K++++F D+D+FK+IND+ GH VGDKV+ +S Sbjct: 169 DSLTDLPNRVLFMDRLQQSINIAQRYDNKVALLFIDLDHFKEINDSLGHGVGDKVLIEVS 228 Query: 160 DQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++ + RLGG+EF + E + I+ + + + E +IN G +++ Sbjct: 229 RRMKNQMRKSDTLSRLGGDEFCIILNDIIDIEDMSDIITSGMEALKEPMEIN---GHTLY 285 Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +S G++ + S+++ AD A+Y AK GRN CF D Sbjct: 286 VGMSIGVSVYPNDGNSASSLLKNADAAMYKAKGDGRN-TYCFYD 328 >gi|90420273|ref|ZP_01228181.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1] gi|90335607|gb|EAS49357.1| GGDEF domain protein [Aurantimonas manganoxydans SI85-9A1] Length = 382 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 9/161 (5%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N A+ ++ ++++ D D+FKQ+ND +GH GD+ + +S Sbjct: 203 DALTGLANRRAYDALIAEELAQRRGAEIGVTLLVVDFDHFKQVNDTYGHEAGDEALKVVS 262 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L +V R GGEEF + + A +R IE + + I+ ++ +T Sbjct: 263 RILRSCVREGDYVCRHGGEEFTVILPQTGLPQGRRTAERIRHAIEAAPL-IAGDQNLSLT 321 Query: 220 ISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 +S G+A +YR AD ALY AK +GR++VV + Sbjct: 322 VSIGVAGAPQHGDDPNTLYRCADAALYEAKSAGRDQVVVYG 362 >gi|241767242|ref|ZP_04764984.1| diguanylate cyclase with GAF sensor [Acidovorax delafieldii 2AN] gi|241362103|gb|EER58214.1| diguanylate cyclase with GAF sensor [Acidovorax delafieldii 2AN] Length = 369 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 EL + R++ L+ D L+GL N +F L ++ DID FKQ+ND Sbjct: 197 ELDEARERMAVLAHTDVLTGLANRRSFTERLRQQLALLQRGGAPACLLMMDIDRFKQVND 256 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH VGD + + VF V R GGEEF A ++ E ++A L + Sbjct: 257 VHGHHVGDDALRHFAATCREVFRASDVVSRWGGEEFLALLPATTLAEGQVVAQRLHAALA 316 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + + ++++ S G+ P+ + D ALY AK GRNR V Sbjct: 317 AAAVPDVAP-PLYLSASMGLCSFDPARPLDLTLRGLDAALYAAKTQGRNRTV 367 >gi|226357073|ref|YP_002786813.1| hypothetical protein Deide_20430 [Deinococcus deserti VCD115] gi|226319063|gb|ACO47059.1| Conserved hypothetical protein; putative membrane protein [Deinococcus deserti VCD115] Length = 789 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 14/171 (8%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNF 146 EL ++ +++ +R D L+GLLN S + L +++F D+D K++ND Sbjct: 344 ELRRAHVQLAHDARHDALTGLLNRSGLVEYLRQALSPETPAPFAVLFVDLDRMKRVNDAH 403 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD+++ +S +L+ V V R+GG+EF A+LA + +I + Sbjct: 404 GHQTGDQMLREMSRRLLTVAPAGSVVARVGGDEFVLVVPEQQRASVALLAAQVVAVI-SE 462 Query: 207 QINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRN 253 + SG + H+T S G+A + H + ++ AD A+ AK GRN Sbjct: 463 PAALQSG-TTHLTASVGVALFPGDGQHPD---ELVRAADMAMDGAKVEGRN 509 >gi|172036121|ref|YP_001802622.1| hypothetical protein cce_1206 [Cyanothece sp. ATCC 51142] gi|171697575|gb|ACB50556.1| hypothetical protein cce_1206 [Cyanothece sp. ATCC 51142] Length = 666 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 8/158 (5%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +S+ N+ L I+ D+D+FKQ ND FGH GD V+ + Sbjct: 503 DPLTGLFNRRYLDASIDREFHRVVRENKPLGIIMVDVDHFKQFNDTFGHDAGDIVLKRIG 562 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF +S + A A LR I+ I + IT Sbjct: 563 TFLQENVRQSDIACRFGGEEFTIILPHASLENAIERAEQLRLGIKQLHIQYGNQSLGLIT 622 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +S G++ H E ++ AD ALY AK+ GR+RV+ Sbjct: 623 VSLGVSAFPNHGENPRELLQNADLALYQAKEQGRDRVI 660 >gi|188992247|ref|YP_001904257.1| putative sensor protein [Xanthomonas campestris pv. campestris str. B100] gi|167734007|emb|CAP52213.1| putative sensor protein [Xanthomonas campestris pv. campestris] Length = 551 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 14/168 (8%) Query: 100 ISQLSRIDCLSGL---------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + Q S D L+GL LNH +S + LS++ D+D+FKQ ND GH Sbjct: 379 LRQQSIRDPLTGLFNRRYLEEALNHE--LSRCTRRVQPLSVLMLDVDHFKQFNDLHGHSG 436 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+A + + L+ R GGEE A+ +A LR I+ Q+ + Sbjct: 437 GDRVLAAIGELLLAQTRGEDICCRYGGEELTIILPEVDLATASAMAEKLRAGIDGLQV-M 495 Query: 211 SSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G S+ IT S G+A H + ++ +AD+ALY AK++GRN+VV Sbjct: 496 ADGVSLPKITASFGVATFPGHAGNAAQLLRKADEALYRAKQAGRNQVV 543 >gi|116253512|ref|YP_769350.1| GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258160|emb|CAK09261.1| putative GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv. viciae 3841] Length = 605 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 24/222 (10%) Query: 51 FYI---GLTPFYGLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRID 107 FY+ GL F G E+ + ++ L+ + ++ L+E S RI ++ D Sbjct: 122 FYVDAEGLPSFIGAEWDVTADV-LLNAELARQKVVAEARALALEE---SNARIEHVADHD 177 Query: 108 CLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 L+GL N L L+++ D+D FKQIND+ GH GD V+ + ++ Sbjct: 178 YLTGLPNRRLLDKRLAELPADKSIATLAVLHLDLDQFKQINDSHGHAAGDVVLRAAALRI 237 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILAND----LRKIIENSQINISSGPSIH 217 V R+GG+EF + ++ E ++ D LRK I Q + SG SI Sbjct: 238 TAAIPANGMVARVGGDEFVIVLVNFTDLTELKLITEDVQRRLRKKIRFGQEMLQSGASIG 297 Query: 218 ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 ++ S R ++ +D ALY AKK GRNRV F+ Sbjct: 298 VSWSGDRRAR-------NLLAESDLALYQAKKLGRNRVEFFT 332 >gi|114047701|ref|YP_738251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] gi|113889143|gb|ABI43194.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] Length = 752 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 11/163 (6%) Query: 107 DCLSGLLNHSAFIS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N +A S S S + D+D FKQ+ND +GH GD ++ + + Sbjct: 318 DSLTGLANRNALFRQIQELISADSLTPGFSFMLMDLDNFKQVNDTYGHDKGDALLVQVVE 377 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDL-RKIIENSQINISSGPSIHI 218 Q+ RLGG+EFA G +++E + LA + +++ ++++ G ++ Sbjct: 378 QIKTCLNDQAVFSRLGGDEFALLLPGIVTQRELSQLAEKINQQVYRRYELSLDKG--VYS 435 Query: 219 TISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 ++S GIA + ++ ADQA+Y++K +GRNR F++ Sbjct: 436 SVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTE 478 >gi|260687621|ref|YP_003218755.1| putative signaling protein [Clostridium difficile R20291] gi|260213638|emb|CBE05464.1| putative signaling protein [Clostridium difficile R20291] Length = 602 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 10/131 (7%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+DYFK+ ND +GH GD + ++ + MF+ R GGEEF ++ +++ I Sbjct: 479 DVDYFKEYNDTYGHYNGDIALKNITIIIKKYLKKDMFMIRYGGEEFLILSVCKDYKKSKI 538 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252 L +I++ N ++T+S GI + C I II AD+ALY AK+SGR Sbjct: 539 FGRKLCRIVKKFLNN-------NLTVSIGI-DTCKNSSIDIREIIENADKALYKAKESGR 590 Query: 253 NRVVCFSDIEN 263 NR + + D +N Sbjct: 591 NRCLHYHDFKN 601 >gi|157372280|ref|YP_001480269.1| diguanylate cyclase [Serratia proteamaculans 568] gi|157324044|gb|ABV43141.1| diguanylate cyclase [Serratia proteamaculans 568] Length = 370 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 21/243 (8%) Query: 22 FSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLL 81 SP F + FSI + V NIF+ + L ++ L L +I S L Sbjct: 133 LSPRLFFL-----FSIPVLLVAIAENIFI-----NSAFSLVNLISYALMLFLIYSARSRL 182 Query: 82 LGYISGSILKELFISY--NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIV 132 + +I +EL R+S+L+ D L+G+ N F + + S++ Sbjct: 183 EQWFQLAIERELENKQLIERLSKLANRDPLTGIANRRYFDNYFDAVLLRESTLQAPFSLI 242 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 D+D+FK+ ND++GH GD+ + L+ L + V R GGEEF S E Sbjct: 243 LLDVDFFKKYNDHYGHQQGDECLTRLATCLESATRRSQDLVARYGGEEFIILLPKSDAGE 302 Query: 192 AAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 A +A + ++ + + +S + +T+S G+A+ + ++ ADQALY AK+ Sbjct: 303 AVQVAKRIEGLLAGLAMPHAASEVAQWVTVSQGVAQWQPGQNREQLLAAADQALYRAKEL 362 Query: 251 GRN 253 GRN Sbjct: 363 GRN 365 >gi|71735567|ref|YP_273675.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556120|gb|AAZ35331.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 763 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 40/225 (17%) Query: 67 ENLSLVIISITISLLLGYISGS------------------ILKELFISYNRISQLSRIDC 108 + L L I +IT+ ++ G IS + +L +L + + Q++ D Sbjct: 235 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDP 294 Query: 109 LSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L+N F L + N L+++F DID+FK+IND+ GH GD+++ ++++ Sbjct: 295 LTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 354 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220 + V R GG+EF +EA LA ++++ + I+ +G + +T Sbjct: 355 IRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAY---RVMQKMKETIALAGRRMVMTT 411 Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S GIA C + ++ AD ALY +K +GRNRV FS Sbjct: 412 SIGIAMFPRDGSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451 >gi|104783288|ref|YP_609786.1| diguanylate cyclase [Pseudomonas entomophila L48] gi|95112275|emb|CAK17002.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas entomophila L48] Length = 496 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 8/160 (5%) Query: 103 LSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ +D L+GL N +F G + L + D+D+FK +ND GH GD+V+ Sbjct: 328 LATLDSLTGLPNRRSFDLLAGQALVEAQRDSAPLVALLIDLDHFKALNDTHGHLAGDEVL 387 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + L + R GGEEF + + A +A +R+ E + + P Sbjct: 388 RQFATVLQGSLRQSDILCRWGGEEFIVLLREAHGRHAIEVAEKIRRRTEQLIFSYNEQP- 446 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +T S G++ ++ + +++ RAD ALY AK+SGRNRV Sbjct: 447 LRLTASIGLSSLQREDTLHSLLTRADHALYRAKQSGRNRV 486 >gi|71278809|ref|YP_269948.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71144549|gb|AAZ25022.1| sensory box/GGDEF/GAF/EAL domain protein [Colwellia psychrerythraea 34H] Length = 1206 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 21/181 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 N++ ++ D L+ L N L + + L++VF D+D FK +ND GH + Sbjct: 765 NQLEHIAHFDILTNLPNRVLLADRLSQAMLQCSRHKQSLAVVFLDLDGFKHVNDTHGHDI 824 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQ-----EAAILANDLRKII 203 GD+++ LS ++ + R+GG+EF A A L + E E +LA I Sbjct: 825 GDELLIALSVRMKEALRENDSLARIGGDEFVAVLADLTTVEDCEPVLERLLLAASEPVIF 884 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 +N +NIS+ + + + ++ ADQA+YVAK+SG+NR F ++ Sbjct: 885 DNIVLNISASIGVTLYPQDNVGA-------DLLMRHADQAMYVAKESGKNRYHLFDTAQD 937 Query: 264 N 264 + Sbjct: 938 D 938 >gi|89893571|ref|YP_517058.1| hypothetical protein DSY0825 [Desulfitobacterium hafniense Y51] gi|89333019|dbj|BAE82614.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 226 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 26/206 (12%) Query: 70 SLVIISITISLLLGYISGSILKELFISY--NRISQLSR----------IDCLSGLLNHSA 117 SLVI S+ + L G +L LF ++ N+ ++L ID L+G+ N A Sbjct: 31 SLVIQSLVLGLGFG-----VLNFLFANWYVNKYAKLENHNEELKSKLVIDKLTGIYNRRA 85 Query: 118 FISSLGSYNEKL--SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 L S + + SI+F DID F+ N+ +GH +GD V+ + + + + R Sbjct: 86 LDLELHSLDSTMTHSIIFIDIDNFRVFNNEYGHKIGDIVLQKVCEVVCKTIRSGDRAYRY 145 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-ISSGPSIHITISAGIAE-RCHKEPI 233 GGEE ++ A +A +R +Q+N + P ITIS G+A E I Sbjct: 146 GGEEIVVLLKDCNKVNAQKIAEKIR-----TQVNQLEHKPYPQITISLGVASCPTDGESI 200 Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259 +I RAD AL +AK G+N V F+ Sbjct: 201 QNVIERADSALLLAKSYGKNCTVTFN 226 >gi|124267696|ref|YP_001021700.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum PM1] gi|124260471|gb|ABM95465.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylibium petroleiphilum PM1] Length = 826 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQI 142 L E + RI +L+ D L+GL N L + +++F D+D FKQI Sbjct: 376 LTETVAAQKRIEELAFTDALTGLPNRVMLAERLDFALAMSHRHQTPFALLFLDLDRFKQI 435 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND+ GH GD+V+ ++++L V RLGG+EF + + A +A R++ Sbjct: 436 NDSLGHVFGDRVLVEVAERLKTCLRQIDTVARLGGDEFVMLLNQTDARGAEAIA---RRV 492 Query: 203 IEN-SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252 +E Q G S +T S GIA + E + +I AD A+Y K+ GR Sbjct: 493 LEVLGQPFTLEGMSFSVTASIGIAMYPNDGESMDDLIKNADAAMYRVKERGR 544 >gi|255315103|ref|ZP_05356686.1| putative signaling protein [Clostridium difficile QCD-76w55] gi|255517773|ref|ZP_05385449.1| putative signaling protein [Clostridium difficile QCD-97b34] Length = 613 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 10/131 (7%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+DYFK+ ND +GH GD + ++ + MF+ R GGEEF ++ +++ I Sbjct: 490 DVDYFKEYNDTYGHYNGDIALKNITIIIKKYLKKDMFMIRYGGEEFLILSVCKDYKKSKI 549 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252 L +I++ N ++T+S GI + C I II AD+ALY AK+SGR Sbjct: 550 FGRKLCRIVKKFLNN-------NLTVSIGI-DTCKNSSIDIREIIENADKALYKAKESGR 601 Query: 253 NRVVCFSDIEN 263 NR + + D +N Sbjct: 602 NRCLHYHDFKN 612 >gi|207738818|ref|YP_002257211.1| signal transduction protein [Ralstonia solanacearum IPO1609] gi|206592186|emb|CAQ59092.1| signal transduction protein [Ralstonia solanacearum IPO1609] Length = 782 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 13/174 (7%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----------KLSIVFFDIDYFKQIND 144 + RI+ + D L+GLLN F ++L + E L+++ D+D FK IND Sbjct: 609 TVQRIAWDATHDVLTGLLNRRGFDATLRAQVEAHRGTRAAPRTPLALLMIDLDGFKAIND 668 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD V+ +++++V T RLGG+EFA Q A A+ +R + Sbjct: 669 CYGHAAGDDVLRGIAERVVQNTRTQDHAARLGGDEFAVILPNCDLQTAVTFADRIRAALA 728 Query: 205 NSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +++G I +S G+ E + + + R D A Y AK GRN + Sbjct: 729 RQPV-LAAGARAQIALSQGVVELQADDADAAAFLARVDAACYRAKSEGRNTIAT 781 >gi|157738511|ref|YP_001491195.1| GGDEF/PAS domain-containing protein [Arcobacter butzleri RM4018] gi|157700365|gb|ABV68525.1| GGDEF/PAS domain protein [Arcobacter butzleri RM4018] Length = 1122 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 73/148 (49%), Gaps = 14/148 (9%) Query: 114 NHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 N+ I + + KL++ DID+FK +ND +GH VGD+V+ Q V + Sbjct: 982 NYKKLIYEYNTNHSKLAVAMLDIDHFKLVNDTYGHDVGDEVLI----QFVEIINNSSRKN 1037 Query: 174 ----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERC 228 R GGEEF +SE + + +LRK IE+ P I T S G Sbjct: 1038 DILIRWGGEEFILVLQLNSENTLSKILENLRKAIEDYDF-----PKIGKKTCSIGGTIYQ 1092 Query: 229 HKEPISTIIYRADQALYVAKKSGRNRVV 256 + E I I RAD+A+Y AK +GRN+V+ Sbjct: 1093 NNEDIIKTIKRADEAVYEAKAAGRNKVI 1120 >gi|149186877|ref|ZP_01865187.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21] gi|148829544|gb|EDL47985.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21] Length = 749 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 RI+ ++ D L+ L N F +SL ++ +++ D+D FK IND GH VGD Sbjct: 323 RINHMAHYDALTNLANRYLFNASLDHALNRLLDRHRICVLYLDLDQFKGINDTLGHAVGD 382 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINIS 211 ++ + +L V RLGG+EF A L E + +I+EN + Sbjct: 383 ALLREVGKRLENTLNGRGLVARLGGDEF--AVLLQDENLDHVAMTIAHRIMENLRDPYVI 440 Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258 G I I S G+A + P S ++ AD ALY AK+ GR +VV F Sbjct: 441 EGSEICIGTSIGVAFADPQGPSASDLMKHADLALYRAKELGRGKVVVF 488 >gi|146339697|ref|YP_001204745.1| hypothetical protein BRADO2694 [Bradyrhizobium sp. ORS278] gi|146192503|emb|CAL76508.1| Conserved hypothetical protein; putative membrane protein; Putative diguanylate cyclase (GGDEF domain) [Bradyrhizobium sp. ORS278] Length = 407 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 15/164 (9%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 + +R D L+GL N + I +L S ++++ D+D FK +ND FGH GD++ Sbjct: 216 EQARRDPLTGLKNRAGLIDALQSRLDGKVSGQRGFAVLYLDLDGFKPVNDTFGHAAGDEL 275 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL-RKIIE--NSQINIS 211 + + L + G + R+GG+EF L +S A A L ++IE + I + Sbjct: 276 LKIVGRTLKDIVGPSDVIARIGGDEF--VVLSTSTDPALDHALALSERLIEAMTAPILLP 333 Query: 212 SGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRN 253 G + I +S GIA EP ++++ AD ALY AK SG++ Sbjct: 334 GGARVDIGMSIGIAAAPDHGIEP-ESLLFAADAALYEAKASGKS 376 >gi|194364834|ref|YP_002027444.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] gi|194347638|gb|ACF50761.1| diguanylate cyclase [Stenotrophomonas maltophilia R551-3] Length = 580 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 13/174 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIV-FFDIDYFKQINDNF 146 +E + + QL+ D L+GLLN A + + E ++V D+D FK IND Sbjct: 401 RERLALTSELRQLAGTDELTGLLNRRALEEVVQQRHAEGEASAVVILLDVDRFKAINDGH 460 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKI 202 GH GD+V+ ++ L + R GGEEF A L + LA LR Sbjct: 461 GHDAGDQVLEQVAQLLQRHLRRSDSIARYGGEEFLVLLADGDLAGGRR----LAESLRLA 516 Query: 203 IENSQINISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRV 255 ++ I I+ G + +T S G+A+ T++ AD A+Y AK GR+RV Sbjct: 517 LQQLDIVIAGGIELRVTASFGVAQGGTDALGWRTLLRAADAAMYQAKAQGRDRV 570 >gi|322833558|ref|YP_004213585.1| diguanylate cyclase with PAS/PAC sensor [Rahnella sp. Y9602] gi|321168759|gb|ADW74458.1| diguanylate cyclase with PAS/PAC sensor [Rahnella sp. Y9602] Length = 573 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 13/177 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 +L + R+ +R D L+ L N F L L++V DIDYFK ND Sbjct: 385 KLVKANRRLEIQARTDSLTKLPNRREFKKVLSHEYMRAKRNRTPLTVVMIDIDYFKHFND 444 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 ++GH GD + ++ L V R GGEEFAA + + A I+A + + I Sbjct: 445 HYGHLSGDACLRLVARTLRKSLKRSTDVVTRFGGEEFAAILPDTDLKGAWIVAQHIMESI 504 Query: 204 ENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 E I S +TIS GIA + E S I+ AD+ALY++K +GRN++ Sbjct: 505 EVLGIKHSFSEFNRVTISQGIATYMPDQDPDIEDQSDIVSAADEALYLSKNNGRNQI 561 >gi|320325677|gb|EFW81739.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320327040|gb|EFW83054.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 763 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 40/225 (17%) Query: 67 ENLSLVIISITISLLLGYISGS------------------ILKELFISYNRISQLSRIDC 108 + L L I +IT+ ++ G IS + +L +L + + Q++ D Sbjct: 235 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDP 294 Query: 109 LSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L+N F L + N L+++F DID+FK+IND+ GH GD+++ ++++ Sbjct: 295 LTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 354 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220 + V R GG+EF +EA LA ++++ + I+ +G + +T Sbjct: 355 IRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAY---RVMQKMKETIALAGRRMVMTT 411 Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S GIA C + ++ AD ALY +K +GRNRV FS Sbjct: 412 SIGIAVFPRDGSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451 >gi|307266780|ref|ZP_07548305.1| diguanylate cyclase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918222|gb|EFN48471.1| diguanylate cyclase [Thermoanaerobacter wiegelii Rt8.B1] Length = 129 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 5/131 (3%) Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 FD+D+FK++ND FGH GD V+ ++D + R GGEEF +S A Sbjct: 1 MFDLDHFKKVNDRFGHAAGDMVLKSVADTVKERIRKTDCFARWGGEEFIILLPETSLNNA 60 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 LA +LRK I S+I + +T S G+ E + I T++ R D LY AK +GR Sbjct: 61 VDLAEELRKQI--SRIELQGIGD--VTASFGVTEYRDTDTIDTVLIRVDNMLYEAKGAGR 116 Query: 253 NRVV-CFSDIE 262 N V C DIE Sbjct: 117 NCVKSCKFDIE 127 >gi|146306677|ref|YP_001187142.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp] gi|145574878|gb|ABP84410.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas mendocina ymp] Length = 625 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 12/166 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 + L+ D L+ L N F++ L S + +I+ FD+D+FK IND +GH VG Sbjct: 459 LQALATTDFLTQLANRRHFMAQLEAVLARLQRSPGQSAAILMFDLDHFKAINDRWGHDVG 518 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+ + + L GRLGGEEFA + +A A ++ + + I + Sbjct: 519 DQALRHFAAILRGQLRKTDTAGRLGGEEFAVVLSEADLPKAVQFATRVQGELARTPI-LP 577 Query: 212 SGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G I + +S GI+ C + + R+D ALY AK+ GRNR+ Sbjct: 578 DGEQIFLAVSVGISSLSSCDTS-VEAALSRSDIALYCAKRGGRNRI 622 >gi|186471106|ref|YP_001862424.1| diguanylate cyclase [Burkholderia phymatum STM815] gi|184197415|gb|ACC75378.1| diguanylate cyclase [Burkholderia phymatum STM815] Length = 507 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 16/168 (9%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVI 155 L+R D L+GL N + L + S ++F DID FK ND +GH GD + Sbjct: 338 LARTDALTGLHNRRSLGDILEDEWRRASRTHTPFALLFLDIDRFKAFNDAYGHQAGDAAL 397 Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 A ++ + P R GGEEF +S AA++A +R I S++ I G Sbjct: 398 ASVAHCIADNIRRPADKAARYGGEEFVVLLPDTSPAGAALVAEKIRAAI--SELPIEHGG 455 Query: 215 SIHITISAGIAERCHKEP-----ISTIIYRADQALYVAKKSGRNRVVC 257 S + ++A I H P +S ++ AD ALY AK GRN VV Sbjct: 456 SEYRRLTASIGL-AHWRPGDNADVSALMRAADDALYTAKARGRNVVVT 502 >gi|308068499|ref|YP_003870104.1| response regulator containing a CheY-like receiver domain and a GGDEF domain [Paenibacillus polymyxa E681] gi|305857778|gb|ADM69566.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Paenibacillus polymyxa E681] Length = 393 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 13/168 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFGHPVGDKV 154 RI + S D L+GL N F L Y + ++S++F DID FK++ND GH D+V Sbjct: 226 QRIYRSSITDGLTGLYNRKYFSGRLRRYMDQGIRVSVIFCDIDNFKKLNDTQGHARADEV 285 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ + GR GGEE A + + + ++ E S + IS G Sbjct: 286 LKQVAQIMEDELDEIGLTGRYGGEELVAMVVDRRAKVGHVAERIRERVAEESIVTISIGY 345 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 S + P ++ +ADQA+Y++K +G+N+V + E Sbjct: 346 S---------TVKKEMNP-DELVKQADQAMYISKTTGKNKVTAYKIAE 383 >gi|300865286|ref|ZP_07110100.1| putative GGDEF domain protein [Oscillatoria sp. PCC 6506] gi|300336759|emb|CBN55250.1| putative GGDEF domain protein [Oscillatoria sp. PCC 6506] Length = 566 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 19/195 (9%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK--- 128 V ++I S L G+ L I+ ++ +L+ D L+G+ N F +L + Sbjct: 373 VALAIQQSELYGH--------LEIANRKLQRLATTDELTGIANRRQFNRALNLEWRRCAR 424 Query: 129 ----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAA 183 LS++ DID+FK ND +GHP GD + ++ + P R GGEEF Sbjct: 425 ELVSLSLIICDIDFFKLYNDCWGHPAGDACLVRVACAIATSIKRPADLAARYGGEEFTVL 484 Query: 184 ALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIAERCHKEPIS--TIIYRA 240 +S + A +A +R +E ++ + S + +IT+S GIA S ++I A Sbjct: 485 LPNTSIEGAIAVARAIRTSVEILKLPHPQSSINPYITLSFGIASALPLADASPDSLIQSA 544 Query: 241 DQALYVAKKSGRNRV 255 D+ALY AK GRNR+ Sbjct: 545 DRALYQAKAKGRNRI 559 >gi|253559434|gb|ACT32398.1| putative diguanylate cyclase [Pseudomonas fluorescens] Length = 441 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/263 (26%), Positives = 116/263 (44%), Gaps = 38/263 (14%) Query: 26 TFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFY--------GLEYILVENLSLV-IISI 76 +M + + +F A + +A + ++ P + GL ++L + L ++I Sbjct: 176 AWMSLIQLSYPMFAAAFLLLA--WQYWRNPRPLHAAQLVGLLGLFWMLPKTFILPFTLNI 233 Query: 77 TISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDI 136 S ++ I+ ++ E + Q++ D L+GL A + + D+ Sbjct: 234 MCSQVMLMIAAAVAHEAY-------QMAFRDELTGLPGRRALNERMQRLGRNYVLAMSDV 286 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK+ ND GH VGD+V+ ++ +L + G R GGEEFA G + E Sbjct: 287 DHFKKFNDTHGHDVGDQVLRLVASKLSKIGGG-GRAYRYGGEEFALVFAGKTIDECMPHL 345 Query: 197 NDLRKIIENSQI---NISSGP----------------SIHITISAGIAERCHKEPISTII 237 +R+ IE I N S P S+ +T+S G+AER + ++ Sbjct: 346 EVIRQSIETYAIQLRNPDSRPQDDQQGRQRRSGAGASSVSVTVSIGVAERLEQRTPEEVL 405 Query: 238 YRADQALYVAKKSGRNRVVCFSD 260 ADQALY AK +GRN V+ F Sbjct: 406 KSADQALYNAKGAGRNCVIAFGQ 428 >gi|149173557|ref|ZP_01852187.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Planctomyces maris DSM 8797] gi|148847739|gb|EDL62072.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Planctomyces maris DSM 8797] Length = 572 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 11/173 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGD 152 R+ L+ D L+GL N + + S+ ++ S ++F D D FK IND+ GH VGD Sbjct: 130 QRLQHLAHHDPLTGLPNRVSILESIQKVIDRKSGKHFALLFMDFDRFKLINDSLGHDVGD 189 Query: 153 KVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQIN 209 K++ ++D+L V + RLGG+EF + AIL + +++E S+ Sbjct: 190 KLLEAIADRLRKTVRASDTIQAARLGGDEFVVLLENLHSPDDAILVGN--RLLETLSRPY 247 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 I G +I+ + S GI H+ E S ++ AD A+Y AK + ++R + F + Sbjct: 248 ILGGYTIYSSASIGIVTSEHRSETASEMLSDADLAMYEAKAAKQDRPIVFDRV 300 >gi|257486683|ref|ZP_05640724.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010155|gb|EGH90211.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 763 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 40/225 (17%) Query: 67 ENLSLVIISITISLLLGYISGS------------------ILKELFISYNRISQLSRIDC 108 + L L I +IT+ ++ G IS + +L +L + + Q++ D Sbjct: 235 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDP 294 Query: 109 LSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L+N F L + N L+++F DID+FK+IND+ GH GD+++ ++++ Sbjct: 295 LTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 354 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220 + V R GG+EF +EA LA ++++ + I+ +G + +T Sbjct: 355 IRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAY---RVMQKMKETIALAGRRMVMTT 411 Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S GIA C + ++ AD ALY +K +GRNRV FS Sbjct: 412 SIGIAVFPRDGSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451 >gi|187918284|ref|YP_001883847.1| two-component response regulator [Borrelia hermsii DAH] gi|119861132|gb|AAX16927.1| two-component response regulator [Borrelia hermsii DAH] gi|224022352|gb|ACN32752.1| response regulatory protein 1 [Borrelia hermsii] Length = 310 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 16/167 (9%) Query: 101 SQLSRIDCLSGLLNHSAFI-----SSLGSYNEKLSIV--FFDIDYFKQINDNFGHPVGDK 153 L+RID L+ + N F S + + K +++ DIDYFK+ NDN+GH GD+ Sbjct: 144 KNLARIDGLTQIPNRRFFTDKFAKSWMQALEHKRNVIVGMLDIDYFKKYNDNYGHTNGDE 203 Query: 154 VIAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQE----AAILANDLRKIIENSQI 208 + ++ L + + R GGEEF ++ S +E +IL D+R + + Sbjct: 204 CLKLIARSLNKIAIKYNIDTARYGGEEFILFSVNKSLEEMINIVSILIEDIRNL---EIV 260 Query: 209 NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNR 254 + S S +T+S G+AE+ H + II AD LY AK SGRN+ Sbjct: 261 HEHSSISKFVTVSVGLAEQIPHDSNFTNIIKLADDKLYEAKISGRNQ 307 >gi|146278220|ref|YP_001168379.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rhodobacter sphaeroides ATCC 17025] gi|145556461|gb|ABP71074.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides ATCC 17025] Length = 832 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 12/171 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++R D L+GL N F +++L +++ D+D FK +ND GHPVG Sbjct: 392 QVFHMARHDMLTGLPNRHYFGDCYEEAVAALAG-GRSVAVHMLDLDGFKAVNDTRGHPVG 450 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQINI 210 D+V+ ++D+L + V RLGG+EFA +EQEA LA L + + NI Sbjct: 451 DQVLRQVADRLRTSVRSTDTVARLGGDEFAVIQTPVRTEQEACDLARRLIAAV-SKPFNI 509 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + S GIA R + ++ AD ALY AK++GR F + Sbjct: 510 -DGTVPEVGASVGIAFARGRGDSAEEVMRFADVALYAAKQAGRGTFRVFDE 559 >gi|315123500|ref|YP_004065506.1| diguanylate cyclase (GGDEF domain) [Pseudoalteromonas sp. SM9913] gi|315017260|gb|ADT70597.1| diguanylate cyclase (GGDEF domain) [Pseudoalteromonas sp. SM9913] Length = 660 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 21/162 (12%) Query: 106 IDCLSGLLNHSAFISSL------GSYNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+GL N F+ L +NE L +++ D+DYFK IND GH GD+ + + Sbjct: 497 VDSLTGLYNRRIFLDKLDKELNKAQFNESPLVLMYLDLDYFKPINDELGHGAGDEALKEV 556 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI------S 211 + ++ + R+GG+EFAA ++++ +++ ++II N S+ I + Sbjct: 557 ATRIKSCLRKHDIIARIGGDEFAAILPQLNDKD--VISEIAQRIITNISKPFILFDQKRT 614 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 G SI ITI+ G A + + ADQALY AK SGRN Sbjct: 615 LGISIGITITNGQAHTSLE-----VKTHADQALYEAKNSGRN 651 >gi|258405632|ref|YP_003198374.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfohalobium retbaense DSM 5692] gi|257797859|gb|ACV68796.1| diguanylate cyclase with PAS/PAC and GAF sensors [Desulfohalobium retbaense DSM 5692] Length = 581 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 17/164 (10%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ D L+GL N ++ Y++ LS + D+D FK ND FGH GD+ + Sbjct: 420 AQTDYLTGLPNRRRLERDGFLQLTQAHRYDKDLSFMMIDLDDFKSFNDQFGHLYGDEALK 479 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS---G 213 +++ L R GGEEFA L ++ + A R++ E + +++ G Sbjct: 480 AVAELLRSASRDADIPARWGGEEFALL-LPETDLDGA------REVAERLRARVATLDFG 532 Query: 214 PSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +T S G+A+ ++ +S + RADQALY AK +GRN+V Sbjct: 533 MGRFVTASLGVAQARAEDDLSALQDRADQALYRAKMAGRNQVAA 576 >gi|242279064|ref|YP_002991193.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242121958|gb|ACS79654.1| diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 283 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 96/189 (50%), Gaps = 28/189 (14%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFK 140 S+L+EL SY + D L+GL N F +L E+ L++ D+D FK Sbjct: 84 SVLQEL--SYK-----TEHDPLTGLSNRRVFERTLDQEIERTRRSKTPLTLAILDLDNFK 136 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA----AAALGSSEQEAAILA 196 +IND +GH GD+V+ +D L V R+GGEEFA L ++Q +L Sbjct: 137 KINDTWGHLKGDEVLIDFADLLSQNSRRYDLVARIGGEEFAIILSGVGLVKAKQ---LLE 193 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS----TIIYRADQALYVAKKSGR 252 L K+ + S + IT SAGI+ C K + +I +AD+ALY AK+SG+ Sbjct: 194 RLLDKVRGLTFAKPGSNETFSITCSAGIS--CFKGMVEVEMHELISKADKALYEAKESGK 251 Query: 253 NRVVCFSDI 261 ++ VC +DI Sbjct: 252 DQ-VCSADI 259 >gi|254441345|ref|ZP_05054838.1| GGDEF domain protein [Octadecabacter antarcticus 307] gi|198251423|gb|EDY75738.1| GGDEF domain protein [Octadecabacter antarcticus 307] Length = 463 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 18/165 (10%) Query: 107 DCLSGLLNHS---AFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +S L + + K +I+ D+D+FK IND +GH VGD+++ + Sbjct: 296 DPLTGLFNRRYAMPHLSRLSAQSRKSGRKFAIMVLDLDHFKAINDTYGHKVGDEILRQTA 355 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS---I 216 +L + R+GGEEF A S A A LR++I + + GP + Sbjct: 356 SRLQDNLRAVDLLARIGGEEFLVAIPNSDVFHARTAAERLRELIGGAPFFV--GPDQKEV 413 Query: 217 HITISAGIAERCHKEP------ISTIIYRADQALYVAKKSGRNRV 255 +T+S G++ ++P + ++ AD ALY AK GRN+V Sbjct: 414 RVTMSVGVSLSDGQDPKDMVDDLGELVNAADVALYAAKNGGRNKV 458 >gi|172060080|ref|YP_001807732.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] gi|171992597|gb|ACB63516.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] Length = 492 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 90/198 (45%), Gaps = 16/198 (8%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I +S LL SG L+ + + + L+R D L+GL N +F L + Sbjct: 300 IALSFLL---SGQ-LRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRTHSV 355 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 S++F D+D FK ND +GH GD +A ++ + P+ R GGEEF + Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPVDTAARYGGEEFVVLLPDT 415 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQAL 244 AA +A +R I+ + + +T S G+A EP +I AD+AL Sbjct: 416 PPAGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQDNEP-DAVIKAADEAL 474 Query: 245 YVAKKSGRNRVVCFSDIE 262 Y AK GRNRV ++ Sbjct: 475 YYAKTIGRNRVAALQPLD 492 >gi|325263970|ref|ZP_08130703.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Clostridium sp. D5] gi|324031008|gb|EGB92290.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Clostridium sp. D5] Length = 639 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 9/170 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + ++S D L+GL+N A + + K ++ D D FKQIND +GH VGD+ + Sbjct: 472 LRRISETDGLTGLMNKGAAEKEVERRLAEGRKGTLFIIDADGFKQINDVYGHAVGDRALR 531 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENSQINISSGPS 215 FL + + + + R+GG+E G E+A A L K +E+ + S PS Sbjct: 532 FLGECIRQTYRGDDVLARIGGDELLIYMEGIENSESARKKAEQLEKYLESR--SESGMPS 589 Query: 216 IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 T+S G A+ + + + + ADQA+Y AK G+ ++ + DI+ Sbjct: 590 --FTVSIGAAQFPADGKNFAELFHAADQAMYAAKAKGKQQICFYKDIQKE 637 >gi|291617596|ref|YP_003520338.1| YciR [Pantoea ananatis LMG 20103] gi|291152626|gb|ADD77210.1| YciR [Pantoea ananatis LMG 20103] gi|327394025|dbj|BAK11447.1| diguanylate cyclase/phosphodiesterase YciR [Pantoea ananatis AJ13355] Length = 669 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 14/188 (7%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFK 140 SG+ + E + R+ ++ D ++GL N A + E+ +V+ D+D FK Sbjct: 227 SGTDITEERRAQERLRVMANTDGITGLPNRHAIHQQISHALERAEGSETGVVYLDLDNFK 286 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA---- 196 ++ND +GH GD+++ +S ++ +GRLGG+EF A +S+ +A Sbjct: 287 KVNDAYGHMFGDQLLQAVSLAILSCLSKNQTLGRLGGDEFVVLAEHTSQAALEAMATRIL 346 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + LR+ I + SG S+ I ++ H E +I AD A+Y AK++ R Sbjct: 347 DRLRQPFRIGLIEVYSGCSVGIALAP-----LHGEDRECLIRNADTAMYHAKENNRGSYC 401 Query: 257 CFSDIENN 264 F++ N Sbjct: 402 VFAEEMNR 409 >gi|288918129|ref|ZP_06412486.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f] gi|288350511|gb|EFC84731.1| diguanylate cyclase with PAS/PAC sensor [Frankia sp. EUN1f] Length = 1530 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 34/176 (19%) Query: 107 DCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N + F L + E +S++F D+D+FK IND +GH GD+V+ +++ Sbjct: 472 DPLTGLANRATFDDRLATALADREPAEPVSVLFIDLDHFKPINDTYGHAAGDRVLTVVAE 531 Query: 161 QLVVVF-----------------------GTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +L V GTP R GG+EF G E+ AA LA Sbjct: 532 RLTAVLTAVPAAGAKAAAPAADAVPPMAAGTPTPC-RFGGDEFGVVLPGVDEESAAELAE 590 Query: 198 DLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGR 252 + ++ + ++ ++ +I G+ C P ++ AD+A+Y AK +GR Sbjct: 591 RIGAVLREPIVLDTAEVTVDASIGVGVTRAAC---PPEHLVRTADEAMYRAKAAGR 643 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ + +R D L+GL N +A L + + +I+ D+D FK IND FGH VGD V+ Sbjct: 1195 QLRRRARHDPLTGLPNRAALAEHLETISRDQAAFAILLVDLDRFKPINDTFGHAVGDHVL 1254 >gi|227820492|ref|YP_002824463.1| hypothetical protein NGR_b22650 [Sinorhizobium fredii NGR234] gi|227339491|gb|ACP23710.1| hypothetical protein NGR_b22650 [Sinorhizobium fredii NGR234] Length = 699 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 19/206 (9%) Query: 71 LVIISITISLLLGYISGSILKELFISY-------NRISQLSRIDCLSGLLNHSAFISSLG 123 L +I+ T+ L ++ G +LK+L + R++ L+ D L+GL N S+F +LG Sbjct: 212 LALIAATVILASIFLFGPLLKKLRNEHRQTMAFEKRLTLLAHTDALTGLNNRSSFNFALG 271 Query: 124 SYNEKL-------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 + +L S++ D+D FK IND GHP GD V+ ++ L + RLG Sbjct: 272 NLFGELERNGAGFSMLLVDLDRFKNINDGLGHPAGDAVLRHVARALQRTLRASDVIARLG 331 Query: 177 GEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPIS 234 G+EFA G ++AA L + + IE +I G S+ ++ S G A H + Sbjct: 332 GDEFAVLLPGI--RDAAALESIAERAIEAIAADIPFDGRSLQVSASIGGAIVPDHAADEA 389 Query: 235 TIIYRADQALYVAKKSGRNRVVCFSD 260 ++ D ALY A KSGR V F + Sbjct: 390 GLMRIVDLALYTA-KSGRGTTVIFDE 414 >gi|301056816|ref|YP_003795027.1| hypothetical protein BACI_c53430 [Bacillus anthracis CI] gi|300378985|gb|ADK07889.1| conserved hypothetical protein [Bacillus cereus biovar anthracis str. CI] Length = 892 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 511 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH +GD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 512 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 571 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 572 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 626 >gi|149180281|ref|ZP_01858786.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Bacillus sp. SG-1] gi|148852473|gb|EDL66618.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Bacillus sp. SG-1] Length = 988 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 15/166 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 +++ ++ D L+ L N F L + N++ +++ D+D FK++ND GH +G Sbjct: 402 KVNYIAHHDYLTDLPNRRKFEQELQKFIEQSKMANQEFGVMYIDMDGFKRVNDTLGHAIG 461 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLRKIIENSQIN 209 DK++ +S +L+ FV R+GG+EF+ + S EQ I +KI+ ++ Sbjct: 462 DKLLVEISTRLLDCVPQNDFVARIGGDEFSVLIDKMHSLEQSTTI----AKKIVAALEVP 517 Query: 210 IS-SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 G + +T S G+A TI+ +AD+ALY AK+ G+N Sbjct: 518 YKIHGYELFVTASVGVAAYPQDGHDAQTILQKADKALYRAKEMGKN 563 >gi|119945812|ref|YP_943492.1| diguanylate cyclase [Psychromonas ingrahamii 37] gi|119864416|gb|ABM03893.1| diguanylate cyclase [Psychromonas ingrahamii 37] Length = 330 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 12/168 (7%) Query: 101 SQLSRIDCLSGLLNHSAFISSLG-SYNE------KLSIVFFDIDYFKQINDNFGHPVGDK 153 +LS D L+GL N F+ LG S+++ +L+++ DIDYFK ND +GH GD+ Sbjct: 157 KELSETDPLTGLGNKRFFMKLLGFSFDKAQREQTELAVLMIDIDYFKLYNDYYGHLKGDQ 216 Query: 154 VIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 + +++ + V R GGEEF G+S Q+ LA ++ +E QI Sbjct: 217 CLKQVANAIKNSLSRKTDIVARFGGEEFIIFFTGASAQQTLQLAELIKNNVELCQITHPK 276 Query: 213 GP-SIHITISAGIAER---CHKEPISTIIYRADQALYVAKKSGRNRVV 256 P S ++T+S G + T I AD+ LY AK GRN+ V Sbjct: 277 SPVSDYVTVSIGAYIKIPSIENYAAETFIKYADKNLYKAKSLGRNKTV 324 >gi|109896794|ref|YP_660049.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109699075|gb|ABG38995.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 340 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 107 DCLSGLLNHSAFISSLGSY--NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+GL N F L ++ + ++ D+D+FK+IND GH +GD V+ + +L Sbjct: 182 DVLTGLCNRRYFDEELAAHAMRPNMCLILADLDHFKKINDTHGHVMGDLVLKASAKKLQA 241 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISA-- 222 R GGEEFA S A +A +R+ IE + + ISA Sbjct: 242 ACREGAQAFRFGGEEFAIIVPNSKLSVARQIAETMRRSIEKIGVRDKRTSQVLGGISASF 301 Query: 223 GIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 GIAE + P++ +I AD+ LY AK GRNRV+ S+ Sbjct: 302 GIAEMKTGMNPLA-LIEAADKQLYEAKNLGRNRVMPMSN 339 >gi|223984856|ref|ZP_03634963.1| hypothetical protein HOLDEFILI_02262 [Holdemania filiformis DSM 12042] gi|223963149|gb|EEF67554.1| hypothetical protein HOLDEFILI_02262 [Holdemania filiformis DSM 12042] Length = 609 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 77/158 (48%), Gaps = 13/158 (8%) Query: 104 SRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 S D L+ +LN A I+ S N + + DID FK IND GH VGD+V+ + Sbjct: 441 SSYDGLTSVLNKRAAEQQITEELSENAEGCLFMIDIDDFKVINDELGHFVGDQVLTVVGT 500 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSS----EQEAAILANDLRKIIENSQINISSGPSI 216 L F +GR+GG+EF S Q+ L L K+++ QI+ Sbjct: 501 LLKTCFRQNDLIGRIGGDEFIVFLHTSDPAVIHQKVKQLTKTLPKLLQREQID------A 554 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +T+S G A + ++ RADQA+Y AK+ G+N+ Sbjct: 555 EVTLSIGAALSQSGDTYPSLFSRADQAMYCAKQQGKNQ 592 >gi|118480382|ref|YP_897533.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str. Al Hakam] gi|118419607|gb|ABK88026.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str. Al Hakam] Length = 910 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 471 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 529 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH +GD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 530 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 589 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 590 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 644 >gi|119945406|ref|YP_943086.1| fused adenylate cyclase and hybrid sensor diguanylate cyclase and response regulator [Psychromonas ingrahamii 37] gi|119864010|gb|ABM03487.1| diguanylate cyclase with GAF sensor [Psychromonas ingrahamii 37] Length = 316 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 75/156 (48%), Gaps = 11/156 (7%) Query: 102 QLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 QL+ D L+ L N FI +N S+VFFD++ FK IND FGH GD Sbjct: 162 QLATQDELTKLSNRRGFIKLAQHGLDICARHNISASLVFFDLNKFKSINDTFGHAEGDAA 221 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + SD + F +GRLGG+EFA +S + A + R IE N S Sbjct: 222 LLAFSDHMKNTFRDSDIIGRLGGDEFAVLLTDTSLEPAEKTISRFRSSIE--HYNKESNL 279 Query: 215 SIHITISAGIAERCHKEPIS--TIIYRADQALYVAK 248 I+ S GI E H++ IS +++ +AD +Y K Sbjct: 280 GYEISFSEGIVEIDHEKNISLESLLGQADSLMYDNK 315 >gi|1119215|gb|AAA87378.1| pleD [Caulobacter crescentus CB15] Length = 454 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 9/164 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N L S + +S + DID+FK+IND FGH +GD+V Sbjct: 287 ELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEV 346 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + +L R GGEEF ++ +A +A +R + S ++ G Sbjct: 347 LREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGR 406 Query: 215 S-IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +++TIS G+ A + ++ RAD+ +Y AK SGRN VV Sbjct: 407 EMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVV 450 >gi|330984890|gb|EGH82993.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 763 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 40/225 (17%) Query: 67 ENLSLVIISITISLLLGYISGS------------------ILKELFISYNRISQLSRIDC 108 + L L I +IT+ ++ G IS + +L +L + + Q++ D Sbjct: 235 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDP 294 Query: 109 LSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L+N F L + N L+++F DID+FK+IND+ GH GD+++ ++++ Sbjct: 295 LTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 354 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220 + V R GG+EF +EA LA ++++ + I+ +G + +T Sbjct: 355 IRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAY---RVMQKMKETIALAGRRMVMTT 411 Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S GIA C + ++ AD ALY +K +GRNRV FS Sbjct: 412 SIGIAVFPRDGSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451 >gi|218459249|ref|ZP_03499340.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5] Length = 298 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 1/125 (0%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + FDID FK+IND GH GD V+ + ++ GR+GGEEF + + Sbjct: 172 LAVFDIDNFKRINDRLGHHAGDLVLRDFAHRIHQNVRRNDCFGRVGGEEFLLVMPSTDPE 231 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +A + + +I S+ ++ P T SAGIA + S + RADQALY AK S Sbjct: 232 DALAIVERMLTVIRFSRP-LADSPDFSYTCSAGIAASLPTDTASELYRRADQALYDAKLS 290 Query: 251 GRNRV 255 GR+RV Sbjct: 291 GRDRV 295 >gi|254431310|ref|ZP_05045013.1| diguanylate cyclase/phosphodiesterase [Cyanobium sp. PCC 7001] gi|197625763|gb|EDY38322.1| diguanylate cyclase/phosphodiesterase [Cyanobium sp. PCC 7001] Length = 657 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 11/153 (7%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + + L Y + +++ D+D FK++ND +GH VGD+V+ + Sbjct: 491 DPLTGLANRAQLMQQLERDLALAKRYGRAIGLLYLDLDGFKEVNDRYGHAVGDRVLQLVG 550 Query: 160 DQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 +L V + R GG+EF S E LA L ++ +S ++ SG I + Sbjct: 551 QRLQEVLRQSDLLCRQGGDEFVVLVPDAGSLNELVTLATKLAEVCGSSLGDLGSG--IAL 608 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKS 250 + S GIA H I ++ AD A+YVAK++ Sbjct: 609 SASVGIARFPDHGHTIDALLVAADNAMYVAKRT 641 >gi|194290118|ref|YP_002006025.1| diguanylate cyclase with hamp domain [Cupriavidus taiwanensis LMG 19424] gi|193223953|emb|CAQ69962.1| Putative diguanylate cyclase with HAMP domain [Cupriavidus taiwanensis LMG 19424] Length = 415 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 17/177 (9%) Query: 89 ILKELFISYNRISQLSRI-------DCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134 +L EL N++ +R D L+GLLN +AF+ +L + +E ++++ Sbjct: 223 LLDELQTWQNQMQHENRSLAHRANHDALTGLLNRAAFVEALEHAVRHAAANDEYAAVLYL 282 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAA 193 D D FK +ND GH GD V+ ++ ++ V R+GG+EFA A + ++A Sbjct: 283 DSDDFKHVNDRHGHAAGDAVLVAVAQRIRASLRGRDTVARIGGDEFAVLATALRAPRDAI 342 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKK 249 +A + + + + I++ G S+ ++S G+A H + +++ AD A+Y AK+ Sbjct: 343 QIAEHILQAMAHP-IDLPDGGSVQASLSIGLAVFPVHAQGSQALLHAADAAMYGAKR 398 >gi|21230901|ref|NP_636818.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769100|ref|YP_243862.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. 8004] gi|21112512|gb|AAM40742.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574432|gb|AAY49842.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. 8004] Length = 565 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 14/168 (8%) Query: 100 ISQLSRIDCLSGL---------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + Q S D L+GL LNH +S + LS++ D+D+FKQ ND GH Sbjct: 393 LRQQSIRDPLTGLFNRRYLEEALNHE--LSRCTRRVQPLSVLMLDVDHFKQFNDLHGHSG 450 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+A + + L+ R GGEE A+ +A LR I+ Q+ + Sbjct: 451 GDRVLAAIGELLLAQTRGEDICCRYGGEELTIILPEVDLATASAMAEKLRAGIDGLQV-M 509 Query: 211 SSGPSI-HITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + G S+ IT S G+A H + ++ +AD+ALY AK++GRN+VV Sbjct: 510 ADGVSLPKITASFGVATFPGHAGNAAQLLRKADEALYRAKQAGRNQVV 557 >gi|148549736|ref|YP_001269838.1| diguanylate cyclase [Pseudomonas putida F1] gi|148513794|gb|ABQ80654.1| diguanylate cyclase [Pseudomonas putida F1] Length = 423 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 16/158 (10%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + F + + S + L+++F D D+FKQIND GH VGD+V+ ++ Sbjct: 251 DSLTGLPNRAFFEGRLSRSVRNAASQQDHLALLFLDSDHFKQINDTLGHAVGDEVLISVA 310 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQ--INISSGPSI 216 +++ V RLGG+EFA + ++A +A KI+ + + + + SG SI Sbjct: 311 ERVRAQLREHDLVARLGGDEFAVLLTPLHTRKDAEHIAE---KIVASMKLPVQLDSGRSI 367 Query: 217 HITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGR 252 ++S GIA +P S ++ AD A+Y AK+ R Sbjct: 368 STSLSVGIAYYPDDGADPAS-LLNAADAAMYQAKRERR 404 >gi|330877007|gb|EGH11156.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 756 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 40/225 (17%) Query: 67 ENLSLVIISITISLLLGYISGS------------------ILKELFISYNRISQLSRIDC 108 + L L I +IT+ ++ G IS + +L +L + + Q++ D Sbjct: 228 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNALLSQLDQARVSLQQVAHYDP 287 Query: 109 LSGLLNHSAF----ISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L+N F L + N L+++F DID+FK+IND+ GH GD+++ ++++ Sbjct: 288 LTNLINRRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 347 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220 + V R GG+EF +EA LA ++++ + I+ +G + +T Sbjct: 348 IRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAY---RVMQKMKETIALAGRRMVMTT 404 Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S GIA C + ++ AD ALY +K +GRNRV FS Sbjct: 405 SIGIAVFPRDGSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 444 >gi|260220372|emb|CBA27846.1| hypothetical protein Csp_A04310 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 553 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 9/160 (5%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N F I + E ++ DID+FK++ND +GH GD+V Sbjct: 95 ELSLKDPLTGLANRRHFRGVLERSIDVVARSGEPALLLMLDIDHFKKVNDTYGHQAGDQV 154 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L V R GGEEF+ +A +R IE I I+ G Sbjct: 155 LQAIAKALTGCVRPMDTVARFGGEEFSVMLPSCHTGFGTAVAERIRAHIEAMSIPIAPGL 214 Query: 215 SIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGR 252 SI +T+S G A + + RAD LY AK GR Sbjct: 215 SIKVTVSIGGAFAPEWVRSTATLWTERADMQLYRAKSEGR 254 >gi|258627327|ref|ZP_05722111.1| GGDEF family protein [Vibrio mimicus VM603] gi|258580365|gb|EEW05330.1| GGDEF family protein [Vibrio mimicus VM603] Length = 505 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 20/241 (8%) Query: 37 IFIATVIFIANIFLFYIGLTPFYGLEYILVE----NLSLVIISITISLLLGYISGSI--- 89 +F ++V+++ N+++ + P +L + + S IS + + +I Sbjct: 265 LFFSSVMYMVNLWVVVTLIKPITAANQVLQQFKTSGGKMPDASTFISAEMKEFASTINHI 324 Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIND 144 + +L S + S D L+ + N L Y L + DIDYFK ND Sbjct: 325 VTQLDESQQVLRWQSEHDPLTRISNRRYLEKQLKGYLSDRPCRYLVLYLIDIDYFKPFND 384 Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KI 202 NFGH GD+ + ++ L + F V R GGEEF SE +A A + K+ Sbjct: 385 NFGHLAGDEALCSVAQALQAIEFDGEKIVTRFGGEEFCVVLASDSELDAEQFAQQIHTKV 444 Query: 203 IENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 E + N ++T+S G I+ R + ++ ++AD ALY AK+SGRNR V Sbjct: 445 AELAIANPQDSDFQYLTVSIGGVYAISPRM--DAYLSLFHQADMALYEAKESGRNRYVVR 502 Query: 259 S 259 S Sbjct: 503 S 503 >gi|239623927|ref|ZP_04666958.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521958|gb|EEQ61824.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 342 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 10/170 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--YNEKLSI-VFFDIDYFKQINDNF 146 + EL + +R+ L+R D L+GLLN A +G N+K I + D+D+FK IND + Sbjct: 4 MDELQVENDRLRILARHDSLTGLLNRGAMEEEVGDLLKNKKGGIFLMLDVDHFKDINDVY 63 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE---AAILANDLRKII 203 GH GD V+ L+ + +F +GR+GG+EFA G E + + R + Sbjct: 64 GHLTGDLVLQELARIMGFLFFKKDIIGRMGGDEFAIFIPGEYRNELVDSKVERLHSRAVQ 123 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + I G S+ +TI A + + + T+ RAD AL + K+ + Sbjct: 124 AGKDMGI--GNSLKLTIGADLVRK--NDTFRTLYRRADLALRIGKQQRKK 169 >gi|118443481|ref|YP_878421.1| sensory box/GGDEF family protein [Clostridium novyi NT] gi|118133937|gb|ABK60981.1| sensory box/GGDEF family protein [Clostridium novyi NT] Length = 820 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 19/183 (10%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFG 147 ++ +I+ + D L+GL N F + + EK +I+F DID FK +ND G Sbjct: 381 LAEEKITYMVYNDILTGLPNKLYFEKHIKNIIEKHDKDKGHFAIMFLDIDNFKLVNDTLG 440 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 HP GD+++ +D++ + + R+GG+EF G +++ + N K+ Sbjct: 441 HPKGDELLKKFADRMKTIIDKNNLLARVGGDEFLLLIDGIEDEDTKHIDNIFLKM----- 495 Query: 208 INISSGPSI------HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSD 260 N+ P I IT+S G A + E + +I AD A+Y AK SG+N + FS Sbjct: 496 NNVLKEPFIIDNEEQFITVSIGTAFYPNDGENVEIMIRNADTAMYEAKNSGKNNLKFFSS 555 Query: 261 IEN 263 N Sbjct: 556 QAN 558 >gi|58583611|ref|YP_202627.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428205|gb|AAW77242.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 321 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 10/136 (7%) Query: 124 SYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 S E V F D+D FKQIND FGH GD+V+ L D G +VGR GG+EF Sbjct: 180 SQREGWPFVLFVLDMDNFKQINDRFGHLAGDRVLVRLVDSAYGWLGAQDWVGRWGGDEF- 238 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RA 240 + +SE +A + N ++E + P +H++ + + C + +T +Y RA Sbjct: 239 LIGIHASEDDATLKLNQWLSMLERE--DAGDAP-LHVSAGSAV---CEQGLDATELYCRA 292 Query: 241 DQALYVAKKSGRNRVV 256 D A+Y AK SG R+V Sbjct: 293 DAAMYRAKFSGGRRLV 308 >gi|332992603|gb|AEF02658.1| diguanylate cyclase with beta propeller sensor [Alteromonas sp. SN2] Length = 1041 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 16/147 (10%) Query: 131 IVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 I+FF D+D FK IND +GH GDKV+ ++L +F ++ R GGEEF + Sbjct: 871 ILFFVIDLDDFKNINDTYGHQAGDKVLVETQNRLKHIFRETDYLIRWGGEEFLVVVHNTP 930 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS----------TIIY 238 ++A ++A + I+ + +S G H+T S G A P+S T I Sbjct: 931 REDAYVMAERVVDIVGSRAFQLSEGTQRHVTCSIGYAAY----PLSQQHYDIFDWQTTIG 986 Query: 239 RADQALYVAKKSGRNRVVCFSDIENNT 265 AD ALY AK + RN + + I ++T Sbjct: 987 FADTALYGAKNNRRNTWMGLTSIPSST 1013 >gi|315182656|gb|ADT89569.1| GGDEF domain [Vibrio furnissii NCTC 11218] Length = 660 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 12/176 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISS----LGSYNEKL---SIVFFDIDYFKQINDNFGHPVG 151 R++ L+ D L+GL N S L S + L ++++ D+D FKQ+ND+FGH G Sbjct: 485 RLAYLAHHDSLTGLANRSELYRVVEDILASNHNTLVPFALIYLDLDGFKQVNDSFGHDAG 544 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ +S++L+ + V RL G+EF S AN L +I +Q + Sbjct: 545 DEVLKQVSERLLSQVRSHDLVARLSGDEFVLVIYPSERDSVTHFANRLLTVI--AQDMVY 602 Query: 212 SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G + + S G+ + + + + T++ AD A+Y AK +G+ R + T Sbjct: 603 RGQVLRVGASMGVYYVDDANLD-LDTVMKSADSAMYQAKCAGKGRYILMDHTRQRT 657 >gi|294979306|pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp gi|294979307|pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp Length = 459 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 9/164 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N L S + +S + DID+FK+IND FGH +GD+V Sbjct: 287 ELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEV 346 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + +L R GGEEF ++ +A +A +R + S ++ G Sbjct: 347 LREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGR 406 Query: 215 S-IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +++TIS G+ A + ++ RAD+ +Y AK SGRN VV Sbjct: 407 EMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVV 450 >gi|317051641|ref|YP_004112757.1| diguanylate cyclase [Desulfurispirillum indicum S5] gi|316946725|gb|ADU66201.1| diguanylate cyclase [Desulfurispirillum indicum S5] Length = 284 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 5/157 (3%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 +++L+ ++ +L S++G + LS++ DID+FK +ND +GH VGDKV+ L+ Sbjct: 131 LTRLANRRKINEVLERETIYSNIG--HTPLSLILLDIDHFKHVNDTYGHGVGDKVLIALA 188 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L VGR GGEEF G A +A +R I + P +T Sbjct: 189 GLLRHNTRDNDVVGRWGGEEFIIILPGCPIGTATEIAERIRTAIAEFPFADITHP---VT 245 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+ E I ++ R D +Y K GRN+VV Sbjct: 246 ASIGVTGYISGESIEDLMGRVDHGMYSGKTGGRNQVV 282 >gi|260901790|ref|ZP_05910185.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] gi|308108105|gb|EFO45645.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus AQ4037] Length = 381 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 13/174 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 +L + ++ LS D L+ L N + I +L + L + D DYFKQ+ND Sbjct: 194 QLLTANKQLEALSLTDSLTQLPNRRSAIKTLKKLWDDTEHKTLPLVCIMIDADYFKQVND 253 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD V+ L+ L F + V RLGG+EF + +A +RK + Sbjct: 254 TCGHEAGDLVLIELAQALKYHFRSDDIVCRLGGDEFFVICPDTGLDGGLYVAEMVRKQVS 313 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRV 255 + P +IS G+AER E +ST +I AD+++Y+AK+ G+N+V Sbjct: 314 QMLVPTCYEP-WRGSISVGVAERT--ENMSTYTDLIRAADESVYLAKQEGKNKV 364 >gi|254507683|ref|ZP_05119815.1| hypothetical protein VPMS16_3490 [Vibrio parahaemolyticus 16] gi|219549380|gb|EED26373.1| hypothetical protein VPMS16_3490 [Vibrio parahaemolyticus 16] Length = 650 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 10/166 (6%) Query: 99 RISQLSRIDCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N + SL E L++++ D+D FKQ+ND +GH G Sbjct: 482 RLEYLAHHDSLTGLANRAHLYRVLDDSLKDEREAKNGLALLYLDLDGFKQVNDTYGHDAG 541 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ ++++L+ + V RL G+EF + +LA L +I+ Q + Sbjct: 542 DEVLKQVAERLLSQVRSQDLVARLSGDEFVVLLTSTDRSSITVLAQRLISLIK--QDIVY 599 Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVV 256 G +++ +S G+ ++ P+ +I AD A+Y AK G+ + V Sbjct: 600 RGRVLNVGVSIGVHYIEQRDIPMDQLIRAADTAMYQAKSLGKGQFV 645 >gi|120406535|ref|YP_956364.1| PAS/PAC sensor-containing diguanylate cyclase [Mycobacterium vanbaalenii PYR-1] gi|119959353|gb|ABM16358.1| diguanylate cyclase with PAS/PAC sensor [Mycobacterium vanbaalenii PYR-1] Length = 448 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 35/225 (15%) Query: 56 TPFYGLEYILVENLSLVIISITISLLLGY-------------ISGSILKELFISYNRISQ 102 +P++G+ + + ++IS L+GY I+ + +++ + + Sbjct: 234 SPYHGVVSFEAPTGKRLHVDLSISSLIGYHDPNGHYVAIAPNITHMVEQQMVLQ-----E 288 Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ +D L+GLLN + + +S+ DID+FK+IND GH VGD V+ Sbjct: 289 MANMDALTGLLNRRSGQIALEIELQKAAESGAPISVAMGDIDHFKRINDRLGHAVGDDVL 348 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L R GGEEF + +A L +R ++++ P Sbjct: 349 RSVAGSLRDGLRRNDVAIRWGGEEFLVFLPNTPLDDAVPLTERIRN-------HVATTPQ 401 Query: 216 I---HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I +T+S G+ + E ++ + R D A+Y AK GR+RVV Sbjct: 402 IASDSVTMSFGVGQWRPGESVAAFVERIDAAMYEAKSGGRDRVVS 446 >gi|16329623|ref|NP_440351.1| PleD [Synechocystis sp. PCC 6803] gi|1652106|dbj|BAA17031.1| PleD [Synechocystis sp. PCC 6803] Length = 464 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 13/170 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+ L+ D L+ + N F S L +S++ D+DYFK ND +GH + Sbjct: 286 QRLKHLAIYDELTQIPNRRYFTSYLEQEWRQCLRQKSPISLILCDVDYFKNYNDLYGHQM 345 Query: 151 GDKVIAFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GDK + ++ + P V R GGEEF + + A + + + +QI+ Sbjct: 346 GDKCLQSVAKVIQNALKRPSDVLARYGGEEFIVILPYTDQSGAYTVGQRIHHCLAEAQIS 405 Query: 210 ISSGP-SIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRV 255 + P S ++TIS GI H P S +I ADQALY AK +GRN+ Sbjct: 406 HADSPTSRYLTISLGIGTTVPLLHYHP-SDLIKIADQALYAAKAAGRNQT 454 >gi|327541144|gb|EGF27690.1| two-component response regulator [Rhodopirellula baltica WH47] Length = 308 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 10/162 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152 + + S ID ++G+ N + E LS + DID FK IND+ GH +GD Sbjct: 134 LQEASHIDSMTGIANRRRCDIEFQTRLELLSQSGVPFCVAIVDIDCFKSINDSGGHDLGD 193 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 VI + +L + V R+GGEEFA +S E L RK +E + Sbjct: 194 HVICKVGQELREISRPDDLVARIGGEEFAIIFTNTSIDELGTLQQQHRKAVERLDFHPE- 252 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +I +T+S G + + RAD ALY AKK+GRN+ Sbjct: 253 --NIRVTVSVGGTCVLASDDSRSAFRRADLALYAAKKNGRNQ 292 >gi|319958161|gb|ADV90265.1| photoactive yellow protein/bacteriophytochrome/diguanylate cyclase/phosphodiesterase [Thermochromatium tepidum] Length = 1108 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 9/180 (5%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 +L+ S + + D L+GL N + F I++ E+ ++ DID+FK IND Sbjct: 674 QLYRSREEMRHRALHDALTGLPNRAQFREALCEAIAASNHSGERFAVALMDIDHFKTIND 733 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD ++ +S ++ V RLGG+EFA + E A A R + Sbjct: 734 TLGHDKGDLLLCAVSRRIRTELPPTGLVARLGGDEFALLLRHLPDPETA-YAQAERVVAA 792 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF-SDIEN 263 + + S +T S G+ ++ RAD ALY AK++GRNRV F SD+E+ Sbjct: 793 LRRPLVIGEDSFSVTSSLGLVMGGADLEPGELLKRADLALYRAKEAGRNRVGHFDSDLES 852 >gi|300113761|ref|YP_003760336.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] gi|299539698|gb|ADJ28015.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosococcus watsonii C-113] Length = 817 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 9/163 (5%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 +I+ + D L+GL+N F +++L + + + ++ +FD+D FK IND GH G Sbjct: 386 QITHQATHDALTGLINRWEFEHRLERVLATLKAESTEYALCYFDLDRFKIINDTCGHTAG 445 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+++ +S+ L + RLGG+EF S Q+A +A + K IE+ Q Sbjct: 446 DELLRQVSEVLEGQIRKRDTLARLGGDEFGVLLEHCSLQQAQRVATAIHKAIEDFQFTW- 504 Query: 212 SGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRN 253 G S I +S G+ I+ ++ AD A Y AK GRN Sbjct: 505 EGKSFRIGVSIGLVPITKASMGIAAVLKAADTACYAAKNKGRN 547 >gi|254974545|ref|ZP_05271017.1| putative signaling protein [Clostridium difficile QCD-66c26] gi|255313668|ref|ZP_05355251.1| putative signaling protein [Clostridium difficile QCD-76w55] gi|255516352|ref|ZP_05384028.1| putative signaling protein [Clostridium difficile QCD-97b34] gi|255649452|ref|ZP_05396354.1| putative signaling protein [Clostridium difficile QCD-37x79] gi|306519529|ref|ZP_07405876.1| putative signaling protein [Clostridium difficile QCD-32g58] Length = 1181 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++ + + D L+ L N A S + Y K +++ DID FK INDN GH GD Sbjct: 704 KLKERAEKDPLTDLYNKKASQSLIEEYITLDKKRKGALMIIDIDNFKGINDNLGHLYGDA 763 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISS 212 V++ +++ L+ +F VGR+GG+EF SE I A +L K E S + Sbjct: 764 VLSEIANDLINLFRATDIVGRIGGDEFIVFIKDISETRDIINKAEELVKTFERSF--LGK 821 Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 G + I++S GIA+ ++R AD ALY AK G+N C++ Sbjct: 822 GRNYKISLSVGIAKFPQDGMDYMTLFRNADMALYSAKGKGKN---CYT 866 >gi|172062494|ref|YP_001810145.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria MC40-6] gi|171995011|gb|ACB65929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria MC40-6] Length = 667 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 17/186 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137 SG + E + R+++L+ D L+GL N A +G+ ++ I+F D+D Sbjct: 218 SGIDVTEERNAQQRLTELANTDMLTGLPNRHAISERIGAALAADRADMRGQVGILFLDLD 277 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSS---EQEAA 193 FK++ND++GH GD+++ +S + + + RLGG+EF G+ E A Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSKIISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQ 337 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I+ LR I + I + SI I + H + + T+I AD A+YVAK+ G++ Sbjct: 338 IILERLRTPIHLGLMEIYTSCSIGIAMYP-----QHGDSLETLIRSADTAMYVAKEEGKH 392 Query: 254 RVVCFS 259 FS Sbjct: 393 TYRVFS 398 >gi|49478974|ref|YP_039341.1| hypothetical protein BT9727_5032 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330530|gb|AAT61176.1| conserved hypothetical protein, PAS/PAC domain, EAL domain, GGDEF domain [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 892 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 511 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH +GD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 512 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 571 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 572 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 626 >gi|309778800|ref|ZP_07673573.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA] gi|308922508|gb|EFP68132.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA] Length = 883 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 11/165 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N S FI+ L S E +L++ F D+D FK +ND GH G Sbjct: 440 RLRHLAAHDALTGLTNRSFFIAHLESAIESARDESRELALFFLDLDRFKSVNDTAGHACG 499 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINI 210 D ++ + +L G + RLGG+EF E + A+LA L + + + Sbjct: 500 DTLLQSAAARLTDCIGPGDVIARLGGDEFVILIDQRVEGKRIALLAERLLQAMREPFDTV 559 Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254 + ++ +S G+A H S ++ AD A+Y AK++GRNR Sbjct: 560 NG--RYYLGVSIGVALYPHDGISGSDLLRSADAAMYRAKQNGRNR 602 >gi|225390081|ref|ZP_03759805.1| hypothetical protein CLOSTASPAR_03831 [Clostridium asparagiforme DSM 15981] gi|225043856|gb|EEG54102.1| hypothetical protein CLOSTASPAR_03831 [Clostridium asparagiforme DSM 15981] Length = 316 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 10/179 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLS---IVFFDIDYFKQI 142 KEL +++ ++ D L+GL N + L G + + ++ DID FK++ Sbjct: 138 KELRSDMEKLNYMAFRDGLTGLYNRRYVVGDLLEDIRGFQQSEQTCNVMILADIDDFKKV 197 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND +GH GD+ + ++ ++ V R GGEEF L + EA ++ +R+ Sbjct: 198 NDTYGHEAGDRALVCIA-HILEGHCRKHKVVRWGGEEFLIVLLNVTRNEAFEISEQIRRE 256 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 ++N I +G T++ G+ +E I I RAD+ALY K++G+NR V + ++ Sbjct: 257 VQNFPI-FYNGIEFRCTLTLGLHAYQDQEGIEESIDRADKALYRGKRNGKNRSVWYENM 314 >gi|187926396|ref|YP_001892741.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ralstonia pickettii 12J] gi|241665883|ref|YP_002984242.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ralstonia pickettii 12D] gi|187728150|gb|ACD29314.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ralstonia pickettii 12J] gi|240867910|gb|ACS65570.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ralstonia pickettii 12D] Length = 916 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 11/165 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N S FI+ L S E +L++ F D+D FK +ND GH G Sbjct: 473 RLRHLAAHDALTGLTNRSFFIAHLESAIESARDESRELALFFLDLDRFKSVNDTAGHACG 532 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINI 210 D ++ + +L G + RLGG+EF E + A+LA L + + + Sbjct: 533 DTLLQSAAARLTDCIGPGDVIARLGGDEFVILIDQRVEGKRIALLAERLLQAMREPFDTV 592 Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNR 254 + ++ +S G+A H S ++ AD A+Y AK++GRNR Sbjct: 593 NG--RYYLGVSIGVALYPHDGISGSDLLRSADAAMYRAKQNGRNR 635 >gi|54298413|ref|YP_124782.1| hypothetical protein lpp2477 [Legionella pneumophila str. Paris] gi|53752198|emb|CAH13630.1| hypothetical protein lpp2477 [Legionella pneumophila str. Paris] Length = 273 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 71/160 (44%), Gaps = 8/160 (5%) Query: 107 DCLSGLLN----HSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + A L K L+++ DID+FKQ ND FGH GD VI + Sbjct: 111 DVLTGLYNRRYLNEALDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFA 170 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L V V R GGEEF + A A + + + IT Sbjct: 171 NVLRQVTRKEDIVCRYGGEEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQIT 230 Query: 220 ISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 IS G+ H + +I AD ALY AK SGRN+ V + Sbjct: 231 ISIGLTMYPAHGNDMQDLITAADNALYEAKNSGRNKTVLY 270 >gi|51892837|ref|YP_075528.1| hypothetical protein STH1699 [Symbiobacterium thermophilum IAM 14863] gi|51856526|dbj|BAD40684.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 720 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 13/168 (7%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ +D L+ L N F ++ ++VF D+D FK IND GHP GD+V Sbjct: 293 RLAMVDSLTDLANRRRFQQELEEAVTEAERTGRSGALVFIDLDMFKHINDTLGHPAGDEV 352 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L RLGG+EFA + AA +A+ L I ++ + P Sbjct: 353 LRQVATILRSAIRPGDTAARLGGDEFALVLRNADGARAAQVADRLLTAIRRARFGGAEAP 412 Query: 215 SIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + +T S G+ E H + ++ RAD AL AK+ GR+ F+ Sbjct: 413 -VSLTASMGVVLFPE--HGRSVRELMNRADMALLEAKEGGRDSWAPFT 457 >gi|332701461|ref|ZP_08421549.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay] gi|332551610|gb|EGJ48654.1| diguanylate cyclase [Desulfovibrio africanus str. Walvis Bay] Length = 411 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 23/186 (12%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 ++L +F+ R++ L D L+GL + ++ D+D+FK+ ND +G Sbjct: 228 TLLSSIFMDSYRMAFL---DELTGLPTRRVLKADFKKLGGGYAVAMVDVDHFKKFNDTYG 284 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H VGD+V+ ++ +L V G R GGEEF ++ A LR+ IE S Sbjct: 285 HDVGDQVLRMVASRLSKVTGGGKAY-RYGGEEFTVLFPKLGKKAARPHLEALRESIEQSG 343 Query: 208 INISS---------------GPSI-HITISAGIAER--CHKEPISTIIYRADQALYVAKK 249 N+ P I +T+S G AE + P I AD+ALY AKK Sbjct: 344 FNLRGQDRPKQKPENPKRPEKPKIVSVTVSIGAAEHGAANATP-DEAIKAADKALYKAKK 402 Query: 250 SGRNRV 255 +GRNRV Sbjct: 403 NGRNRV 408 >gi|313497503|gb|ADR58869.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1] Length = 754 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 18/184 (9%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFK 140 +L +L + + Q + D L+ LLN F + S N +L+++F DID+FK Sbjct: 275 LLSQLDQARASLQQAAHYDALTNLLNRRGFNQVFAERLVEHQASEN-RLAVMFLDIDHFK 333 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +IND+ GH GD+++ +++ + V R GG+EF +S EA LA + Sbjct: 334 RINDSLGHDAGDELLKVIANHIKAATRNHDLVARFGGDEFCVVTSLNSRDEARHLA---Q 390 Query: 201 KIIENSQINIS-SGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVV 256 +I+ + I G + +T S GI+ + ST ++ AD ALY +K +GRN + Sbjct: 391 RIMHRMKEPIDLGGRRMVMTTSIGIS--IFPDDGSTAEELLKHADLALYQSKDNGRNSLN 448 Query: 257 CFSD 260 F+D Sbjct: 449 FFND 452 >gi|170699576|ref|ZP_02890616.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] gi|170135527|gb|EDT03815.1| diguanylate cyclase [Burkholderia ambifaria IOP40-10] Length = 492 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 90/198 (45%), Gaps = 16/198 (8%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I +S LL SG L+ + + + L+R D L+GL N +F L + Sbjct: 300 IALSFLL---SGQ-LRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRTHSV 355 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 S++F D+D FK ND +GH GD +A ++ + P+ R GGEEF + Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPVDTAARYGGEEFVVLLPDT 415 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQAL 244 AA +A +R I+ + + +T S G+A EP +I AD+AL Sbjct: 416 PPAGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQDNEP-GAVIKAADEAL 474 Query: 245 YVAKKSGRNRVVCFSDIE 262 Y AK GRNRV ++ Sbjct: 475 YYAKTIGRNRVAALQPLD 492 >gi|152989945|ref|YP_001355667.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] gi|151421806|dbj|BAF69310.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] Length = 844 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 14/196 (7%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-- 127 ++++ +S LL + GS+ K ++ + + D L+ L N F L SY E Sbjct: 397 KILVVESVLSTLLNVV-GSV-KAIYKYTKDLEYYATRDPLTNLYNQRVFWE-LISYEEER 453 Query: 128 ------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 K S++ D+D FK +ND +GH GD+ + ++D L V R GG+EF Sbjct: 454 AKRHHYKFSLLVIDLDNFKLVNDTYGHDFGDEFLNKIADLLQDCVRPGDIVARYGGDEFV 513 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYR 239 + EQ A I+AN + K E I+ G I+ +S G+A C H + I + Sbjct: 514 IVLPETDEQGAFIVANRILKNAEKYSIHTPDGKIINPRLSIGVA-TCPDHADNIKDLFSI 572 Query: 240 ADQALYVAKKSGRNRV 255 AD +Y AK +G+ +V Sbjct: 573 ADHMMYKAKSAGKAQV 588 >gi|255091933|ref|ZP_05321411.1| putative signaling protein [Clostridium difficile CIP 107932] gi|260682618|ref|YP_003213903.1| putative signaling protein [Clostridium difficile CD196] gi|260686218|ref|YP_003217351.1| putative signaling protein [Clostridium difficile R20291] gi|260208781|emb|CBA61658.1| putative signaling protein [Clostridium difficile CD196] gi|260212234|emb|CBE02947.1| putative signaling protein [Clostridium difficile R20291] Length = 1182 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++ + + D L+ L N A S + Y K +++ DID FK INDN GH GD Sbjct: 705 KLKERAEKDPLTDLYNKKASQSLIEEYITLDKKRKGALMIIDIDNFKGINDNLGHLYGDA 764 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISS 212 V++ +++ L+ +F VGR+GG+EF SE I A +L K E S + Sbjct: 765 VLSEIANDLINLFRATDIVGRIGGDEFIVFIKDISETRDIINKAEELVKTFERSF--LGK 822 Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 G + I++S GIA+ ++R AD ALY AK G+N C++ Sbjct: 823 GRNYKISLSVGIAKFPQDGMDYMTLFRNADMALYSAKGKGKN---CYT 867 >gi|113968700|ref|YP_732493.1| diguanylate cyclase [Shewanella sp. MR-4] gi|113883384|gb|ABI37436.1| diguanylate cyclase [Shewanella sp. MR-4] Length = 608 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 10/181 (5%) Query: 90 LKELFISYN-RISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDN 145 L++ +S N ++ ++ D L+GL N F +L + + ++ D+DYFK ND Sbjct: 426 LQQALVSVNTQLRVMADTDELTGLSNRRPFTQTLETLLQQDTPFGLLMLDVDYFKSYNDT 485 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD + ++ L P + R+GGEEFA S + +AN L + Sbjct: 486 YGHLEGDAALKRVAQALTRCGILPQENLLARIGGEEFAIVLQQISPIQLEAIANQLCYQV 545 Query: 204 ENSQINISSGPSIHITISAG----IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +I S P IT+S G E +S ++ R D LY AK GRN VV S Sbjct: 546 AALEIPHKSSPKGKITLSIGGVYFPKESQDSLTLSEVLRRTDICLYRAKDQGRNTVVIDS 605 Query: 260 D 260 + Sbjct: 606 N 606 >gi|298505017|gb|ADI83740.1| sensor diguanylate cyclase, GAF domain-containing [Geobacter sulfurreducens KN400] Length = 688 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 16/184 (8%) Query: 87 GSILKELFISYNR---ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDI 136 SI+ E +S R + QLS D L+GL N + +N L+++ D+ Sbjct: 485 ASIMIERALSIERADILEQLSITDHLTGLYNRRFLKRRMEEELARSIRHNLNLTVMLIDL 544 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK ND GH GD+ + + L V R GGEEF G+S++E+ +A Sbjct: 545 DHFKIYNDLCGHLAGDRALKRTAKILSETARQMDVVTRFGGEEFCIILPGTSKKESIFVA 604 Query: 197 NDLRKIIENSQINISSG-PSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGR 252 +R+ IE + P +T S GIA E E ++++ AD ALY AK GR Sbjct: 605 ERIRREIEGEEFPHEENLPLGRLTASIGIASFPEDGSTE--ASLVKAADVALYRAKSDGR 662 Query: 253 NRVV 256 NRV+ Sbjct: 663 NRVI 666 >gi|238024841|ref|YP_002909073.1| diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1] gi|237879506|gb|ACR31838.1| Diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1] Length = 693 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 19/169 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 I +L+ +D L+GL N S I + + +++F D+D FK IND+ GH + Sbjct: 253 GEIVRLATLDTLTGLPNRSTLTHRIAEAIDTARRRHSGFAVLFMDLDGFKAINDSLGHSI 312 Query: 151 GDKVIAFLSDQL---VVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIEN 205 GD+V+ S +L V F T V RLGG+EF A +GS+ EA ++A + + + Sbjct: 313 GDRVLVTFSQRLRGCVRSFDT---VARLGGDEFVVLAERIGSAS-EARVIAETVLERTRD 368 Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 ++ + +T S GIA E + ++ AD A+Y AK+ GR Sbjct: 369 GAWSLDE--PLQVTPSIGIALYPRDGETVDALLKHADAAMYEAKRGGRG 415 >gi|115351075|ref|YP_772914.1| diguanylate cyclase [Burkholderia ambifaria AMMD] gi|115281063|gb|ABI86580.1| diguanylate cyclase [Burkholderia ambifaria AMMD] Length = 492 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 16/198 (8%) Query: 76 ITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK------- 128 I +S LL SG L+ + + + L+R D L+GL N +F L + Sbjct: 300 IALSFLL---SGQ-LRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRTHSV 355 Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGS 187 S++F D+D FK ND +GH GD +A ++ + P+ R GGEEF + Sbjct: 356 FSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPVDTAARYGGEEFVVLLPDT 415 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK---EPISTIIYRADQAL 244 AA +A +R I+ + + +T S G+A + EP +I AD+AL Sbjct: 416 PPAGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQDNEP-DAVIKAADEAL 474 Query: 245 YVAKKSGRNRVVCFSDIE 262 Y AK GRNRV ++ Sbjct: 475 YYAKTIGRNRVAALQPLD 492 >gi|323499455|ref|ZP_08104427.1| PAS/GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326] gi|323315511|gb|EGA68550.1| PAS/GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326] Length = 679 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 17/179 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKV 154 N + + ID L+GL N F L NE L +++ DID FK IND+ GH +GDKV Sbjct: 247 NTNQEDAHIDSLTGLYNRFGFTKRLEQLIQNETPLIMLYLDIDNFKNINDSLGHHIGDKV 306 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I +S +L + +G LGG+EF L E E +A L + I I++ + P Sbjct: 307 IKEVSSRLKRLLPQQAVLGHLGGDEF---GLILPEPENNRMAEMLSERI----ISLINQP 359 Query: 215 ------SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 S + S G +A ++ AD A+Y AK GRNR++ F+D N Sbjct: 360 FDLHHFSKRLACSIGSVAYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEA 418 >gi|239908980|ref|YP_002955722.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239798847|dbj|BAH77836.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 395 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 15/200 (7%) Query: 66 VENLSLVIISIT-ISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF------ 118 V++ SL+I + + I+ LG++ L S I +L+ ID L+GL N F Sbjct: 185 VQSYSLLISAPSLIACTLGFV----LLHRERSEAEIRRLADIDHLTGLANRRGFEAAFTA 240 Query: 119 -ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 ++ + N+ S+ D+D+FK +ND GH GD V+ L L+ G FV R+GG Sbjct: 241 ALARAAARNDWTSLALIDLDHFKAVNDRLGHAAGDVVLVELGRILIREVGAFGFVARIGG 300 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAER--CHKEPIST 235 +EF G+ AA LA LR I S G +T + G++ R + + Sbjct: 301 DEFCVVMPGTPPDRAAGLAETLRAAIACHDWE-SYGLPEPLTATIGVSSRRGSLDDSGAD 359 Query: 236 IIYRADQALYVAKKSGRNRV 255 + AD AL AK RN V Sbjct: 360 FLRLADMALLAAKDETRNCV 379 >gi|228930357|ref|ZP_04093361.1| Sensory box protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829343|gb|EEM74976.1| Sensory box protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 677 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 238 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 296 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH +GD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 297 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 356 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 357 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 411 >gi|251794481|ref|YP_003009212.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Paenibacillus sp. JDR-2] gi|247542107|gb|ACS99125.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Paenibacillus sp. JDR-2] Length = 683 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 34/228 (14%) Query: 53 IGLTPFYGLEYI---LVENLSL---VIISITISLLLGYISGSILKELFISYNRISQLSRI 106 +G F+ E I L EN+ + ++IS+T+ LL + I +++ + +++ Sbjct: 195 MGAASFWCGEPIASSLTENIPINLFLLISVTLVTLLIMLVTWI--AIYLDRTVLERMAYS 252 Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N A +++KL ++F D+D FK IND GH +GD ++ ++ Sbjct: 253 DPLTGLANRHAMNRY---FDQKLDKARSYGLLFLDLDQFKIINDTLGHDIGDLLVQAVAK 309 Query: 161 QLV--VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN----DLRK--IIENSQINISS 212 +L V G F RLGG+EF G E LAN D+RK ++E +++ I+ Sbjct: 310 RLRSHVSEGAQTF--RLGGDEFLLVTRGMEPSEVEKLANRILEDIRKPYLLEGNELYITG 367 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 I ++ GI ER S+++ AD A+Y AK+ G+N+ + + Sbjct: 368 SIGISLSPQHGI-ER------SSLLIAADTAMYQAKRRGKNQYCLYDE 408 >gi|149909871|ref|ZP_01898521.1| hypothetical protein PE36_13974 [Moritella sp. PE36] gi|149807036|gb|EDM66994.1| hypothetical protein PE36_13974 [Moritella sp. PE36] Length = 568 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + ++ + ++LS++ D+D+FK+ NDN+GH GD V+ + Sbjct: 373 DPLTGLYNRRYYEETINQELMRAKRHKQELSLLMLDLDHFKRFNDNYGHDAGDYVLKTIG 432 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGP-S 215 L+ + RLGGEEF G+ + A +AN L K I + ++S G S Sbjct: 433 SLLLESMRGEDTICRLGGEEFIIVLPGTGIEAARQIANGLCKSINELHLAMKDLSLGKLS 492 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + I IS K+ ++ + +D ALY AK+ GRN+ +SD+ Sbjct: 493 VSIGISTYPINGMQKDELTKL---SDIALYEAKERGRNQSCHYSDL 535 >gi|34498647|ref|NP_902862.1| two component sensor [Chromobacterium violaceum ATCC 12472] gi|34104500|gb|AAQ60858.1| probable Two component sensor [Chromobacterium violaceum ATCC 12472] Length = 558 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 21/206 (10%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK- 128 S+V I + +S + Y+SG +LF L+ D L+ L N F + G E+ Sbjct: 349 SVVAILLLLSGTMRYVSGQA--QLF-------SLAFTDGLTRLYNRRHFDEAFGHAVEQC 399 Query: 129 ------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFA 181 L+++ DID+FK+ ND++GH GD+ + ++ L F RLGGEEF Sbjct: 400 RQKRKPLALLILDIDHFKKYNDHYGHYAGDEALQKVARALKDCFRQKGQLTARLGGEEFG 459 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP---ISTIIY 238 +A A + ++ S+ P I+ S G+ C P T+ Sbjct: 460 VLLTPGDTPQALSAAERFLGRLAAMELPHSASPLGKISCSIGVCA-CIPGPADSTRTLFE 518 Query: 239 RADQALYVAKKSGRNRVVCFSDIENN 264 +ADQALY AK+ GRNR + N Sbjct: 519 QADQALYEAKRGGRNRASLYQGPPGN 544 >gi|27379924|ref|NP_771453.1| hypothetical protein blr4813 [Bradyrhizobium japonicum USDA 110] gi|27353077|dbj|BAC50078.1| blr4813 [Bradyrhizobium japonicum USDA 110] Length = 917 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 16/165 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 RI+ L+ D L+ L N + F L + E +++ + DID FK +ND GH VGD Sbjct: 470 RITHLAHYDALTDLPNRAMFHEHLRQELAAITDGEAIAVHYIDIDEFKGVNDALGHLVGD 529 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILA---NDLRKIIENSQ 207 +++ ++ L G FV RLGG+EFA A+ S +Q ++A +R + Sbjct: 530 ELLKSVATSLSRCAGPADFVARLGGDEFAIVQGAVTSPDQVNDLVARVFQAIRAPFDCMG 589 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 ++++ SI I ++ G H + I+ AD A+Y AK +GR Sbjct: 590 HHLTTDASIGIALAPG-----HGTVLDQILKNADLAMYAAKSAGR 629 >gi|295697672|ref|YP_003590910.1| diguanylate cyclase with GAF sensor [Bacillus tusciae DSM 2912] gi|295413274|gb|ADG07766.1| diguanylate cyclase with GAF sensor [Bacillus tusciae DSM 2912] Length = 507 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 26/184 (14%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIND 144 EL +R+ ++ D L+GL N + ++ Y V D+D+FKQIND Sbjct: 332 ELLRVRHRLIAGAQTDPLTGLANRTGLQEKFDELVAEGRRYTWPFLFVLLDLDHFKQIND 391 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI------LAND 198 GHP GD+++ ++D L RLGG+EFA S Q I L + Sbjct: 392 TQGHPEGDRLLRVVADHLRRAVRPFDVASRLGGDEFALLLARCSPQTEGIQKRLAALLGE 451 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVC 257 L + E + +SAG+A +YR ADQ LY AK+ GR R+ Sbjct: 452 LSRAFEG------------LGVSAGVAAFPEDGDEFRELYRAADQRLYEAKRRGRGRIAW 499 Query: 258 FSDI 261 D+ Sbjct: 500 PDDV 503 >gi|291277216|ref|YP_003516988.1| GGDEF domain-containing protein [Helicobacter mustelae 12198] gi|290964410|emb|CBG40260.1| putative GGDEF domain protein [Helicobacter mustelae 12198] Length = 357 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 8/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ Q R+D L+ + S S Y E SI+FFDID FK IND +GH Sbjct: 191 KQMEQKIRMDTLTRIYRRSYLEQLLCYCESRFKDYGENYSILFFDIDGFKFINDAYGHSA 250 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ + L T VGR GG+EF +S A +A + K++ + + Sbjct: 251 GDALLVQFARVLKSNSRTSDMVGRYGGDEFLILMPKASVSIAKEVALRICKVVAGQEF-L 309 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I ++ S G+ +R +++R D LY AKK+GRN+V Sbjct: 310 CQDVKITVSTSIGVVDRLGFASKEQMLHRVDSLLYEAKKNGRNQV 354 >gi|262403046|ref|ZP_06079606.1| GGDEF family protein [Vibrio sp. RC586] gi|262350545|gb|EEY99678.1| GGDEF family protein [Vibrio sp. RC586] Length = 391 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 101/224 (45%), Gaps = 40/224 (17%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAFISS 121 Y L+ +L IIS T S Y + + Y I +L+ +D L+GL N +F S Sbjct: 154 YFLLSLFALTIISNTAS----YFFSRAINYIHTLYQEGIEELAYLDPLTGLANRWSFESW 209 Query: 122 LGSYNEKL----------SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--------V 163 NEKL ++VF DID FKQINDN+GH VGD+V+ + +L Sbjct: 210 A---NEKLKEQQGEDTITALVFLDIDNFKQINDNYGHDVGDQVLKHFAHRLRNNLRNKDR 266 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSI----HI 218 + R G+EF G DL I+E S + I P H+ Sbjct: 267 ATNKHDYSIARFAGDEFVLMLYGVKS------LRDLDHILERISNLFIDRYPETDLLNHL 320 Query: 219 TISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFSD 260 T+S G+A K+ I+ + AD+A+Y AK G+N+ + D Sbjct: 321 TVSIGVAIYP-KDAITLFELTRCADKAMYAAKHGGKNQYRYYQD 363 >gi|119492593|ref|ZP_01623811.1| regulatory component of sensory transduction system [Lyngbya sp. PCC 8106] gi|119453062|gb|EAW34232.1| regulatory component of sensory transduction system [Lyngbya sp. PCC 8106] Length = 455 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 13/162 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N AF L + LS++ DIDYFK ND++GH GD+ + ++ Sbjct: 293 DSLTQIGNRRAFDHYLQQEWHRAKREQLVLSLILADIDYFKSYNDHYGHQAGDECLRQIA 352 Query: 160 DQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIH 217 + P FV R GGEEFA + + A ++A + I Q+ + S Sbjct: 353 QAIHDAVKRPADFVARYGGEEFAVILPNTDIEGAKLVAELIHSQIHQLQLPHPQSTVCPF 412 Query: 218 ITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVV 256 IT+S G++ C +P + +I R D ALY AK+ GR+R+V Sbjct: 413 ITLSQGVSA-CVPQPEDSLKMLIARTDGALYQAKEQGRDRIV 453 >gi|148657838|ref|YP_001278043.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Roseiflexus sp. RS-1] gi|148569948|gb|ABQ92093.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Roseiflexus sp. RS-1] Length = 796 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 18/179 (10%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLS----IVFFDIDYFKQINDNF 146 ++ R++ LS D L+GL N + + +L N + S ++ ++D FKQIND+ Sbjct: 350 LTEARLAYLSSHDPLTGLANRTLLLDRLQQALDRRNRERSLPCGVLLINLDRFKQINDSL 409 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE---QEAAILANDLRK 201 GH VGD+V+ ++ +L + V R GG+EFA + GS E + A + + L Sbjct: 410 GHAVGDEVLIAVAGRLKHITRPGDTVARFGGDEFAVVIDSPGSVEDIWRVAKRVQHTLNH 469 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +++ G SI I + G A+ T+++ AD AL+ AK GR+R+V F + Sbjct: 470 PVTVQDHSLTVGVSIGIAVDDGRAKDA-----MTLLHNADTALHQAKARGRSRIVMFEE 523 >gi|30265372|ref|NP_847749.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47530915|ref|YP_022264.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49188183|ref|YP_031436.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] gi|30260050|gb|AAP29235.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47506063|gb|AAT34739.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49182110|gb|AAT57486.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] Length = 892 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 511 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH +GD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 512 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 571 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 572 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 626 >gi|327396504|dbj|BAK13925.1| diguanylate cyclase [Pantoea ananatis AJ13355] Length = 354 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D+FK +ND FGH GD ++A +S L G R GG+E S++ Sbjct: 227 LILIDVDHFKNVNDTFGHEAGDFLLAEISGLLRDSVGMKDIPARFGGDELGVIIRDSNDV 286 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 + LA L++ I Q+ + + + ++S GIA + I + RAD+ALY K+S Sbjct: 287 DIISLAESLQRNI--GQLRLPASVTFRCSVSIGIASADKADSIHEWLRRADKALYEVKRS 344 Query: 251 GRN 253 GRN Sbjct: 345 GRN 347 >gi|284048163|ref|YP_003398502.1| diguanylate cyclase with PAS/PAC sensor [Acidaminococcus fermentans DSM 20731] gi|283952384|gb|ADB47187.1| diguanylate cyclase with PAS/PAC sensor [Acidaminococcus fermentans DSM 20731] Length = 302 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 11/174 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143 KE I N + L+ D L+GL N S + ++ F DID+F N Sbjct: 127 KETPIVEN-LCSLAYHDPLTGLPNRMFLEALLKMRFSEFSRLHRLFAVFFSDIDHFHDFN 185 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 + +GH GD ++ + + VGR GGEEF +++ LA +++ Sbjct: 186 EQYGHQAGDHMLKAFARTITGSMRESDTVGRWGGEEFIGICPIGKKEDIVPLAARFHQLV 245 Query: 204 ENSQINIS-SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 SQI++ G +HIT+S GI + +II RAD+ ++ AKK GRN V Sbjct: 246 --SQISVDHEGTPLHITMSLGITTVQEGDTPESIIDRADRFMFAAKKKGRNTTV 297 >gi|260223195|emb|CBA33514.1| hypothetical protein Csp_B19440 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 316 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 16/164 (9%) Query: 104 SRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +++D L+G+ + + + L S + +V D+DYFK+IND +GH GD+V+ Sbjct: 156 AQVDTLTGVSSRAHVLEQLDLRLNQLRSTQQPCGLVLLDLDYFKKINDTYGHTAGDEVLQ 215 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQINISSGP 214 S +V G GR+GGEEF + + E EA + L + E+S + P Sbjct: 216 RFSRLVVGTLGRNDGFGRIGGEEFLLLFPMVTAPEMEAKVQGI-LELVRESSP--LPEVP 272 Query: 215 SIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRVV 256 H T SAG+ +S I + AD+ALY AK +GR+R++ Sbjct: 273 RFHHTCSAGLV--MLDPALSAIENMRNADRALYAAKGAGRDRLI 314 >gi|229153511|ref|ZP_04281689.1| Sensory box protein [Bacillus cereus m1550] gi|228630115|gb|EEK86766.1| Sensory box protein [Bacillus cereus m1550] Length = 735 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469 >gi|170723990|ref|YP_001751678.1| diguanylate cyclase [Pseudomonas putida W619] gi|169761993|gb|ACA75309.1| diguanylate cyclase [Pseudomonas putida W619] Length = 427 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 23/180 (12%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 Q++ D L+GL A + I D+D+FK+ ND GH VGD+V+ ++ + Sbjct: 240 QMAFRDELTGLPGRRALNERMQRLGRNYVIAMTDVDHFKKFNDTHGHDVGDQVLRLVASR 299 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI----------- 210 L V R GGEEFA G + E +R++I N + + Sbjct: 300 LSKV-TGGGRAYRYGGEEFALVFAGKTADECVPHVEAVREMIANYTMQLRDQNNRPQDDS 358 Query: 211 --------SSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S ++ +TIS G+AER H+ P ++ ADQALY AK +GRN V+ + Sbjct: 359 AGRQRRSGSGAGTVSVTISIGVAERLIEHRNP-EEVLKSADQALYSAKGAGRNCVMVYGQ 417 >gi|158318807|ref|YP_001511315.1| serine/threonine protein kinase [Frankia sp. EAN1pec] gi|158114212|gb|ABW16409.1| serine/threonine protein kinase [Frankia sp. EAN1pec] Length = 1643 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 84/174 (48%), Gaps = 11/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVF--FDIDYFKQIND 144 +L + R+ QLS D L+GL N L + +K I F DID FK ND Sbjct: 1461 QLAAANQRLEQLSVTDQLTGLANRRRLDEVLDAEWHRATRQKTPIAFAMIDIDQFKLYND 1520 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK-II 203 ++GH GD+ I ++ L V R GGEEFA G+ AA +A+ LR + Sbjct: 1521 HYGHTAGDRCIHQVATCLAVNIRGTDLAARYGGEEFAIVMAGTDLPVAARIAHRLRSAVA 1580 Query: 204 ENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRV 255 E ++ + S I +T+S G+ + +T + AD ALY AK GRNRV Sbjct: 1581 ELTEPHPLSTEQI-VTVSIGVTAIVPTPGDNPTTFVELADTALYQAKNGGRNRV 1633 >gi|311031457|ref|ZP_07709547.1| GAF sensor-containing diguanylate cyclase [Bacillus sp. m3-13] Length = 578 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 17/176 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGH 148 Y Q S L+ L N+ F S L +++ LS++ D+D+FK++ND +GH Sbjct: 396 YQETKQKSERCALTKLYNYRFFESVLDKEYDKLNKGHSKSLSLIMLDLDHFKKVNDVYGH 455 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE---- 204 G++++ ++D+L + G V R GGEEF + LA +R + Sbjct: 456 QSGNEILMQVADRLTALVGNKGTVARYGGEEFVILLPDMERGQCFELAERIRVNLATRSF 515 Query: 205 --NSQINISSGPS-IHITISAGIAERCHK-EPISTIIYRADQALYV-AKKSGRNRV 255 I + G + +T S G A + E +I AD+A+YV AKK+GRN+V Sbjct: 516 ALKQHIRETQGAQMVKVTASIGFATAPYDAEDTLDLIRHADRAMYVGAKKAGRNKV 571 >gi|301632812|ref|XP_002945474.1| PREDICTED: response regulator pleD-like [Xenopus (Silurana) tropicalis] Length = 225 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+GL N ++L ++++ ++ ID+FKQ+ND GH GD Sbjct: 20 LCELSLKDPLTGLANRRYLYATLDREIDRVTRAGDSALLLMLHIDHFKQLNDAHGHLAGD 79 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ ++ L + R G EEFA A ++ +R+ IE + I IS Sbjct: 80 SILQSVARTLNACMRPMDTIARYGDEEFAIVLPSCQANFAHMVGERVRRAIEATPIRISP 139 Query: 213 GPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +H+T+S G A + + + RADQ LYVA+++G N + Sbjct: 140 AEQVHVTVSIGGAFALQWIRSTKQLWVERADQQLYVARQAGCNHM 184 >gi|254411172|ref|ZP_05024949.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181673|gb|EDX76660.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 639 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 20/176 (11%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPV 150 ++ LSRID L+ L N F L ++L+ ++ DID+FK ND FGH Sbjct: 465 QQLKYLSRIDDLTKLANRRDFDDHLAQEWQRLAEEEVPLALILADIDFFKLFNDAFGHLT 524 Query: 151 GDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD + ++ + V + V R GGEEFA + ++A LA +R+ ++ +N Sbjct: 525 GDFCLEQIAQAIRECVKHSGALVARFGGEEFAIIMPHINGEQAVQLAEQIRERVK--ALN 582 Query: 210 ISSGP------SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 IS P S IT+S G+A +P+ ++ AD+AL+ +K+ GR+RV Sbjct: 583 ISHDPYRMCGYSSIITLSLGVASMIPHPDDDPLK-LVQAADEALFESKRQGRDRVT 637 >gi|157363606|ref|YP_001470373.1| diguanylate cyclase [Thermotoga lettingae TMO] gi|157314210|gb|ABV33309.1| diguanylate cyclase [Thermotoga lettingae TMO] Length = 1357 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 18/169 (10%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q S D L+GL F++ L Y LSI+ DID FK+IND +GH +GD+V Sbjct: 1196 QRSITDPLTGLYTRWYFVTRLYEEFERVKRYGGHLSIIMCDIDDFKKINDTYGHRIGDEV 1255 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSG 213 + F+S L VGR GGEEF + + AA +A L +IIE + + Sbjct: 1256 LKFISSVLRSSTRITDIVGRYGGEEFIMILPNTPKLSAAKVAEKVLYQIIETNPFD---- 1311 Query: 214 PSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +T+S G++ E +P I + AD+A Y++K+ G++ V F Sbjct: 1312 --FRLTMSFGVSGYPEDNVNQPEELINF-ADKATYMSKERGKSCVTVFQ 1357 >gi|152966061|ref|YP_001361845.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] gi|151360578|gb|ABS03581.1| diguanylate cyclase [Kineococcus radiotolerans SRS30216] Length = 584 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 18/162 (11%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++++ SR D L+G+ N + + + L+ D+D+FK ND +GH +G Sbjct: 429 QLTEASRRDPLTGVGNRRHWDEVAAREVGRAERSGDPLTFALIDLDHFKAYNDAYGHLIG 488 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ + + R GGEEFA A G ++A +A+ +R ++ ++Q Sbjct: 489 DDLLREFAAAAGAQLRPGDTIARWGGEEFALALPGCDLEQARDVADRIRAVVPHAQ---- 544 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 T +AG+A+ +T++ RAD ALY K++GR+ Sbjct: 545 -------TATAGLAQWTPGASAATVLARADAALYRGKEAGRD 579 >gi|323139092|ref|ZP_08074150.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC 49242] gi|322395656|gb|EFX98199.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC 49242] Length = 763 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 11/173 (6%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLG----SYNE---KLSIVFFDIDYFKQINDNFGH 148 + I +++ D L+GL N F +LG NE K +++ D+D FK++ND GH Sbjct: 324 ALREIERIAHFDDLTGLPNRYQFQDTLGENLVQLNERGLKAALINIDLDRFKEVNDTLGH 383 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 VGD+++A + +L P V RLGG+EF + E I A R I E ++ Sbjct: 384 TVGDQLLASVGARLSACAPAPHMVARLGGDEFCVLVRATREL-PDIDALAQRMIAEMNRP 442 Query: 209 NISSGPSIHITISAGIAERCH--KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G +I I S G+A + PI ++ +D ALY AK R V F+ Sbjct: 443 FFIDGNTISIGASIGVAAAPQDSETPIG-LLKCSDLALYRAKSGQRGTAVWFT 494 >gi|315180228|gb|ADT87142.1| GGDEF family protein [Vibrio furnissii NCTC 11218] Length = 505 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 29/212 (13%) Query: 65 LVENLSLVIISIT-----ISLLLGYISGSILKELFISYNRISQLSRI-------DCLSGL 112 L +N V+I + ISLLLG++S +++E ++ + ++ D L+G+ Sbjct: 298 LTQNDQWVLIGLGAGGTIISLLLGFVSYLLMREKETLNLKLEERTKELRFMVEHDSLTGI 357 Query: 113 LNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF-GT 168 N AF L Y ++ ++V FDID FK IND + H GD+++ ++ + V G Sbjct: 358 FNRRAFNRILDVYMRDDKVFTLVSFDIDNFKSINDRYSHLAGDQILVAVTKTIEKVLEGN 417 Query: 169 PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-----ISSGPSIHITISAG 223 +FV R GG+EF+ + + +R +E SQ + IS SI ++ G Sbjct: 418 DIFV-RTGGDEFSILCHVTEREPLMRYLEKIRCTVEQSQFDTGYQLISVSLSIGAAVNHG 476 Query: 224 IAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +E+ ++ RAD LY +K GRN+V Sbjct: 477 YSEQ-------ELLQRADTMLYESKAKGRNQV 501 >gi|307941581|ref|ZP_07656936.1| response regulator [Roseibium sp. TrichSKD4] gi|307775189|gb|EFO34395.1| response regulator [Roseibium sp. TrichSKD4] Length = 303 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 7/153 (4%) Query: 107 DCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV 164 D L+ L N F + + + ++ DID+FK +ND +GH GD +A + ++ Sbjct: 136 DPLTKLYNRRCFFEEVKKLPQDGEACLLILDIDHFKSVNDTYGHQAGD--MALVESAKLL 193 Query: 165 VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGI 224 + V RLGGEEFA ++E A R IE + G +I T+S G+ Sbjct: 194 LDQNVGIVSRLGGEEFAIYLHDTTESVGKRAAESFRACIEAGSLEF-QGKTIRFTVSIGL 252 Query: 225 AERCHKEP--ISTIIYRADQALYVAKKSGRNRV 255 A + + + AD+ALY AKKSGRNRV Sbjct: 253 AFKPSGVSFNVDELYGSADEALYEAKKSGRNRV 285 >gi|297537576|ref|YP_003673345.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297256923|gb|ADI28768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera sp. 301] Length = 828 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 17/172 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 I L+ D L+ L N F +L E+ +++ D+D+FK IND GH VGD Sbjct: 400 IEHLAFHDVLTDLPNRRFFNQALNKAIERAEQHQAAFAVLIMDLDHFKTINDTMGHAVGD 459 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAIL--ANDLRKIIENSQINI 210 K++ ++D++ F R+GG+EFA G EA I A+ L ++++ I Sbjct: 460 KLLIGVADRIKQNVDDSYFFARMGGDEFAILIHGYESTEALIAKSASLLEQVVQPYYI-- 517 Query: 211 SSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKKSGRNRVVCFS 259 +G ++ S G+A C+ + + +I AD A+Y AK+ GRN +S Sbjct: 518 -AGAGYFVSASIGVA--CYPKDSRDVDDLIKYADSAMYSAKQKGRNNCQFYS 566 >gi|317047099|ref|YP_004114747.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pantoea sp. At-9b] gi|316948716|gb|ADU68191.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pantoea sp. At-9b] Length = 917 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 11/170 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY------NEKLSIVFFDIDYFKQINDNFGHPVGD 152 RI LSR D L+GL N L ++ ++ L ++ D+D FK IND +GH VGD Sbjct: 491 RIQFLSRHDILTGLANRMQLQEFLTAHLDQATDDDPLIVISLDLDQFKPINDTWGHTVGD 550 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 V+ +S +L + G RLGG+EF +S L++ I Q IS Sbjct: 551 AVLNQISQRLQSLMGAHELAARLGGDEFILVMREASRAGVEYRCRALQRAIH--QPVISG 608 Query: 213 GPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +T S GI A + +P ++ AD AL A+ +GRN+ V +S+ Sbjct: 609 SHQLSLTASMGIVCAPQDASQP-EALLRLADIALGQARAAGRNQWVWYSN 657 >gi|255305706|ref|ZP_05349878.1| putative signaling protein [Clostridium difficile ATCC 43255] Length = 832 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 13/165 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150 NR+ ++ D L+ + N +A+I L + N + +++ DIDYFK IND +GH + Sbjct: 669 NRLLDKAQRDSLTNIYN-AAYIRKLTAQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLL 727 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209 GDKV+ ++ L F VGRLGG+EF+ +E I ND+ I I Sbjct: 728 GDKVLIDVAKALDESFAKNDIVGRLGGDEFSVYINDIINKEELINKCNDVYNHIH--LIK 785 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +G S+ I++ IA+ + + AD ALY +K+ GRNR Sbjct: 786 LPNGESLSISMGVVIAKPGQE--YDELYQIADNALYDSKRQGRNR 828 >gi|163800441|ref|ZP_02194342.1| putative virulence-mediating protein VirC [Vibrio sp. AND4] gi|159175884|gb|EDP60678.1| putative virulence-mediating protein VirC [Vibrio sp. AND4] Length = 591 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 90/197 (45%), Gaps = 15/197 (7%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG--- 123 EN ++I+ L GYI ++ ++Q + D L+ + N S L Sbjct: 394 ENFYFLVIAAASFWLFGYIH-----QMNKVNEELAQQNTTDPLTKVYNRRYLTSWLDKMA 448 Query: 124 --SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 S + K ++ DID+FK ND FGH +GDK++ ++ L + R GGEEF Sbjct: 449 RRSPDRKFALAVIDIDHFKAFNDQFGHDIGDKMLLNVAHALDEATRADDLLVRWGGEEFV 508 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAG----IAERCHKEPISTII 237 + A LR +ENS + + S S+ TIS G ++ + K Sbjct: 509 LLFEIKLAADCAKTLERLRLAVENSNLVVDSD-SLSATISIGAVNELSAQSMKNQWDQWF 567 Query: 238 YRADQALYVAKKSGRNR 254 ADQALY AK+SGRN+ Sbjct: 568 LAADQALYNAKQSGRNQ 584 >gi|152995913|ref|YP_001340748.1| diguanylate cyclase [Marinomonas sp. MWYL1] gi|150836837|gb|ABR70813.1| diguanylate cyclase [Marinomonas sp. MWYL1] Length = 714 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 10/127 (7%) Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA 193 DID+FK++ND +GH GD V+ ++ L +VGR GGEEF SS Sbjct: 594 LDIDHFKEVNDKYGHQRGDSVLVEIARVLKDSLRITDYVGRYGGEEFIIIFPESS----- 648 Query: 194 ILANDLRKIIENSQINISS---GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 D++ IIE ++ I+ T S G+ + I T++ RAD ALY AK+S Sbjct: 649 --IADVKLIIEGVRLKIAQYDFEGVEQKTASFGLTAFKAGDTIETVVKRADNALYEAKES 706 Query: 251 GRNRVVC 257 GRNRVV Sbjct: 707 GRNRVVV 713 >gi|311693671|gb|ADP96544.1| sensory box/GGDEF family protein [marine bacterium HP15] Length = 916 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 13/184 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 L +L + + + +L+ D L+GL N F +S E +++F D+D FK+I Sbjct: 470 LTQLKAAQSELHRLAFYDPLTGLANRQLFRDRLNHVVSRSRRSGEPAALMFLDLDGFKRI 529 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--ILANDLR 200 ND GH GD+++ ++ LV V RLGG+EF S+ +AA + LR Sbjct: 530 NDTLGHDSGDELLCQVAQWLVGCVREEDSVARLGGDEFVVLLSRISDSDAAGKVAETILR 589 Query: 201 KIIENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + ++N + IT+S GI H E T++ AD A+Y AK+ GRN F+ Sbjct: 590 SLCQRIRLN---DHEVGITVSIGITMIPHDSEDAGTLMKYADLAMYRAKELGRNTFQFFT 646 Query: 260 DIEN 263 N Sbjct: 647 PAMN 650 >gi|293610609|ref|ZP_06692909.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826953|gb|EFF85318.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 569 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 ++ ++ D L+G+ N S ++ + SY +K + ++ DID FKQ+ND +GH VGD Sbjct: 406 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFTQTCLMIIDIDRFKQVNDQYGHIVGD 465 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 +VI +++QL + + R GG+EF +A +LA +R I +I +S Sbjct: 466 RVIVSIAEQLKQNIRSSDLIVRYGGDEFLILLEQVQFVDARLLAEKIRIAISLEEICLSG 525 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S +H+++S G A ++ +AD++L AK GRN V Sbjct: 526 SDEKLHVSVSIGFA--IGAASWIELLEKADRSLLRAKARGRNAV 567 >gi|295675116|ref|YP_003603640.1| diguanylate cyclase [Burkholderia sp. CCGE1002] gi|295434959|gb|ADG14129.1| diguanylate cyclase [Burkholderia sp. CCGE1002] Length = 505 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 13/197 (6%) Query: 71 LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS------ 124 ++I+ + +L ++ + + + + + +L+ D L+GL N A +L Sbjct: 306 MLILGGGVIVLAAWLGAELRRRQRVEHE-LERLAGTDGLTGLPNRRALCETLDREWLRAR 364 Query: 125 -YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAA 182 LS++F DID+FK ND +GH GD + ++ + V P VGR GGEEF Sbjct: 365 RTGSVLSLLFVDIDHFKAYNDTYGHQAGDVALTAVARCIRRVSQRPGDCVGRYGGEEFVV 424 Query: 183 AALGSSEQEAAILANDLRKIIEN---SQINISSGPSIHITISAGIAERCHKEPISTIIYR 239 + A ++A +R I+ + + G + ++I A ++ + ++ Sbjct: 425 VLPDTDVTGAEVVAEKIRAAIDELDIAHVGCEFG-RVTVSIGATMSRPDRAMDVGAVVRA 483 Query: 240 ADQALYVAKKSGRNRVV 256 AD+ALY AK GRN V Sbjct: 484 ADEALYSAKAGGRNMVA 500 >gi|229112762|ref|ZP_04242294.1| Sensory box protein [Bacillus cereus Rock1-15] gi|228670596|gb|EEL25908.1| Sensory box protein [Bacillus cereus Rock1-15] Length = 735 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469 >gi|218900474|ref|YP_002448885.1| sensory box/GGDEF family protein [Bacillus cereus G9842] gi|218541726|gb|ACK94120.1| sensory box/GGDEF family protein [Bacillus cereus G9842] Length = 735 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVMFLDLDRFKKINDR 355 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++++L + V R GG+EF +++AI + I N Sbjct: 356 LGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469 >gi|188575141|ref|YP_001912070.1| Putative signal protein with HAMP and GGDEF domains [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519593|gb|ACD57538.1| Putative signal protein with HAMP and GGDEF domains [Xanthomonas oryzae pv. oryzae PXO99A] Length = 296 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 10/136 (7%) Query: 124 SYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 S E V F D+D FKQIND FGH GD+V+ L D G +VGR GG+EF Sbjct: 155 SQREGWPFVLFVLDMDNFKQINDRFGHLAGDRVLVRLVDSAYGWLGAQDWVGRWGGDEF- 213 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RA 240 + +SE +A + N ++E + P +H++ + + C + +T +Y RA Sbjct: 214 LIGIHASEDDATLKLNQWLSMLERE--DAGDAP-LHVSAGSAV---CEQGLDATELYCRA 267 Query: 241 DQALYVAKKSGRNRVV 256 D A+Y AK SG R+V Sbjct: 268 DAAMYRAKFSGGRRLV 283 >gi|218778795|ref|YP_002430113.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfatibacillum alkenivorans AK-01] gi|218760179|gb|ACL02645.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfatibacillum alkenivorans AK-01] Length = 858 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 21/170 (12%) Query: 104 SRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +R D L+GL N A +++ Y E L++++ D+D FKQ+ND+ GH VGD+++ Sbjct: 428 ARHDDLTGLANRGALREWLERSLNAAKRYEEMLALLYIDLDRFKQVNDSLGHVVGDQLLK 487 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKI------IENSQIN 209 + +L+ + + R+GG+EF AA+ S+++A + +R+I I++ ++ Sbjct: 488 EVVSRLLRIVRDSDILARMGGDEFVLAASRLESKEDALGMGRRIRQIFREPYRIQDHELY 547 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + SI I+ A+ K +I AD A+Y AK G NR+ F Sbjct: 548 LDA--SIGISFFPEDAQDAGK-----LIRHADTAMYYAKIRGGNRLAEFE 590 >gi|84625416|ref|YP_452788.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369356|dbj|BAE70514.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 296 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 10/136 (7%) Query: 124 SYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 S E V F D+D FKQIND FGH GD+V+ L D G +VGR GG+EF Sbjct: 155 SQREGWPFVLFVLDMDNFKQINDRFGHLAGDRVLVRLVDSAYGWLGAQDWVGRWGGDEF- 213 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RA 240 + +SE +A + N ++E + P +H++ + + C + +T +Y RA Sbjct: 214 LIGIHASEDDATLKLNQWLSMLERE--DAGDAP-LHVSAGSAV---CEQGLDATELYCRA 267 Query: 241 DQALYVAKKSGRNRVV 256 D A+Y AK SG R+V Sbjct: 268 DAAMYRAKFSGGRRLV 283 >gi|16264177|ref|NP_436969.1| hypothetical protein SM_b20447 [Sinorhizobium meliloti 1021] gi|15140302|emb|CAC48829.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021] Length = 564 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 15/163 (9%) Query: 107 DCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL N F L +L+++ D+D FK IND GH GD V+ +D+ Sbjct: 138 DVLTGLPNRRQFSDQLRGALPVPNGARLALMQIDLDDFKPINDTLGHGAGDAVLKMAADR 197 Query: 162 LVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 + V F RL G+EFA A +E+ A L N ++ IN+ G S+ Sbjct: 198 IRSVLRDREFAYRLAGDEFAVIQWRADQPREAERLADALINAFKEPFTVEGINVFVGASV 257 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I ++ + ++ AD ALY AKK GR R F+ Sbjct: 258 GIAVAPADGNEVEQ-----LMKAADIALYAAKKDGRGRSSTFT 295 >gi|16331870|ref|NP_442598.1| PleD-like-protein [Synechocystis sp. PCC 6803] gi|1001789|dbj|BAA10669.1| slr0302 [Synechocystis sp. PCC 6803] Length = 768 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 12/169 (7%) Query: 98 NRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 ++ + S D L+ L N S ++ ++ + ++ D+D+FK+ ND+ GH Sbjct: 594 EQLEEQSLRDPLTKLFNRRYLEQRLSQELARAKRHHYSVGVLMIDVDHFKRFNDSLGHDA 653 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++A + L T R GGEE ++ +EA+ A LR+ I +I Sbjct: 654 GDRILASIGTLLKNNIRTSDVACRYGGEEITIILPDATLEEASQKAEFLRQAIAEMKIEY 713 Query: 211 SSGPSIHITISAGIAERC---HKEPISTIIYRADQALYVAKKSGRNRVV 256 S +T S G+A C H E II AD+ALY AK++GRNRV+ Sbjct: 714 SGKIVNSVTASFGVA--CYPDHGETGQEIIQIADKALYDAKQAGRNRVI 760 >gi|325681063|ref|ZP_08160595.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8] gi|324107292|gb|EGC01576.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8] Length = 363 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 16/168 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSY-----------NEKLSIVFFDIDYFKQINDNFGH 148 + +L+ ID L+ L N A +G Y + ++ DID FKQIND++GH Sbjct: 199 LQKLATIDPLTRLFNRRA----MGEYLKLVHLNSERTGKGYAVCLGDIDDFKQINDSYGH 254 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD + ++D + + R GGEEF + + A +R+ I + Sbjct: 255 GAGDDALKQVADIIEHSVPAEGYAARWGGEEFLFVIPNADIEAGRECAEKIRRAIADRTF 314 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S +T++ G+AE + I +I AD+ LY K +G+NRV+ Sbjct: 315 K-SGEKRFGVTMTIGVAEGKPDDDIEKMISLADKRLYAGKSAGKNRVI 361 >gi|300022463|ref|YP_003755074.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans ATCC 51888] gi|299524284|gb|ADJ22753.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans ATCC 51888] Length = 660 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 10/172 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 +++ D L+G+ N AF++ L + N + SI + D+D FK +ND GH VGD ++ Sbjct: 225 RVAMTDGLTGIANRRAFMARLNALNNRAGAKSFSIFYIDLDRFKSVNDALGHAVGDALLK 284 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDLRKIIENSQINISSGPS 215 +S ++ + V RLGG+EFA A E+ A+ LA R ++ S+ G Sbjct: 285 SVSARITGLVREGDLVARLGGDEFAIVAQDIRERAFASSLAE--RLVVSLSEPYDLEGQK 342 Query: 216 IHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCF-SDIENNT 265 + I G+A C ++ + AD A++ AK++GR F +D++ + Sbjct: 343 VQIGACVGVALACESGVGGEMLLKQADLAMFAAKEAGRGMYCIFEADMQRSA 394 >gi|168203415|gb|ACA21550.1| putative diguanylate cyclase [Candidatus Pelagibacter ubique] Length = 335 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 20/160 (12%) Query: 107 DCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N + I SL S+ N I+ D+D+FK +ND GHPVGD+V+ LS+ L Sbjct: 179 DPLTGLGNRRSLIESLASFARQNISFGIIQLDLDHFKTVNDQLGHPVGDRVLVELSNILR 238 Query: 164 VVFGTPMFVGRLGGEEF---------AAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 RLGG+EF LG +E+ A L L Q+ +S G Sbjct: 239 QEIRAHDVAVRLGGDEFILLITGTNDPTELLGLAERLLARLKPPLTIQTHKVQLGLSMG- 297 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I E + + I+ DQALY +K+ G+ R Sbjct: 298 -------GRIVEAAERWSMIDILQAVDQALYHSKRRGKGR 330 >gi|218895683|ref|YP_002444094.1| sensory box/GGDEF family protein [Bacillus cereus G9842] gi|218544852|gb|ACK97246.1| sensory box/GGDEF family protein [Bacillus cereus G9842] Length = 567 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 6/172 (3%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149 L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND GH Sbjct: 135 LRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGHM 194 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD +++ ++ +L V G + RLGG+EF + + + LA + + Sbjct: 195 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 252 Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + T++ +D A+Y AK+ GRN F+D Sbjct: 253 MLEGHEVYISASLGLCSYPQDGLDVETLLKNSDLAMYSAKEQGRNAACFFTD 304 >gi|219670549|ref|YP_002460984.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2] gi|219540809|gb|ACL22548.1| diguanylate cyclase [Desulfitobacterium hafniense DCB-2] Length = 248 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 79/174 (45%), Gaps = 26/174 (14%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GL N + ++ S+ DID FK IND +GH GDKVI ++ Sbjct: 75 DSMTGLPNKGFMYLRLNIDMEKYAKQEKEYSLAMIDIDRFKNINDTYGHLAGDKVIKEVA 134 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--- 216 L V R GGEEFA +SE+ AA L +R ++EN GP I Sbjct: 135 GLLRKNVRASDEVIRWGGEEFAILLPETSEEGAANLIERIRNLMENHDF----GPEIASQ 190 Query: 217 HITISAGIAERCHKEPIST-----------IIYRADQALYVAKKSGRNRVVCFS 259 +T SAG+ E + I+ +DQALY AKK+ RN V FS Sbjct: 191 KVTFSAGVVSYKKLEEVKAKENRLTNNTDLIVNFSDQALYQAKKT-RNTVWRFS 243 >gi|16126701|ref|NP_421265.1| response regulator PleD [Caulobacter crescentus CB15] gi|221235482|ref|YP_002517919.1| response regulator PleD [Caulobacter crescentus NA1000] gi|60390590|sp|Q9A5I5|PLED_CAUCR RecName: Full=Response regulator PleD; AltName: Full=Stalked cell differentiation-controlling protein; Includes: RecName: Full=Diguanylate cyclase; Short=DGC; AltName: Full=Diguanylate kinase gi|302425180|sp|B8GZM2|PLED_CAUCN RecName: Full=Response regulator PleD; AltName: Full=Stalked cell differentiation-controlling protein; Includes: RecName: Full=Diguanylate cyclase; Short=DGC; AltName: Full=Diguanylate kinase gi|13424011|gb|AAK24433.1| stalked-cell differentiation controlling protein [Caulobacter crescentus CB15] gi|220964655|gb|ACL96011.1| GGDEF/response regulator protein pleD [Caulobacter crescentus NA1000] Length = 454 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 9/164 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N L S + +S + DID+FK+IND FGH +GD+V Sbjct: 287 ELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEV 346 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + +L R GGEEF ++ +A +A +R + S ++ G Sbjct: 347 LREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGR 406 Query: 215 S-IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +++TIS G+ A + ++ RAD+ +Y AK SGRN VV Sbjct: 407 EMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVV 450 >gi|75759399|ref|ZP_00739494.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899313|ref|ZP_04063576.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222] gi|228963723|ref|ZP_04124865.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str. T04001] gi|74493111|gb|EAO56232.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228795959|gb|EEM43425.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str. T04001] gi|228860344|gb|EEN04741.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222] Length = 569 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 6/172 (3%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHP 149 L +S +R +L+ D L+ L N I+++ ++ +++FD+D FK +ND GH Sbjct: 137 LRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKEFGMIYFDLDRFKLVNDTLGHM 196 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD +++ ++ +L V G + RLGG+EF + + + LA + + Sbjct: 197 IGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHRQDDMSQLATSVLSCFQAP--F 254 Query: 210 ISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 + G ++I+ S G+ + T++ +D A+Y AK+ GRN F+D Sbjct: 255 MLEGHEVYISASLGLCSYPQDGLDVETLLKNSDLAMYSAKEQGRNAACFFTD 306 >gi|315443124|ref|YP_004076003.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1] gi|315261427|gb|ADT98168.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1] Length = 822 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 13/162 (8%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N S F L N ++++ D+D FK +ND+ GHP D ++ Sbjct: 374 DPLTGLANRSLFQDRLAHALMLRERDNRSVAVISLDLDDFKLVNDSLGHPAADSLLVSAG 433 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++V + V R+GG+EF A L E + ++A + + ++ + G I + Sbjct: 434 RRIVDCVRSGDTVARVGGDEF-ALLLEGDEVSSDLIAQRVAEAF--TEPFVVDGHQILMH 490 Query: 220 ISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRVVCF 258 S G+A H EP T+I RAD A+Y AKKS +RV F Sbjct: 491 PSIGVAVASHDEPDISAQTLIKRADMAMYTAKKSRSSRVHTF 532 >gi|308273130|emb|CBX29733.1| hypothetical protein N47_F14280 [uncultured Desulfobacterium sp.] Length = 296 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 7/157 (4%) Query: 103 LSRIDCLSGLLNHSAFIS------SLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVI 155 LS D L+GL N F++ L N+ ++FF D+D K IND GH GDK + Sbjct: 136 LSITDQLTGLYNRRGFMTFADRQLKLAGRNKNGMMLFFADLDGLKDINDRLGHKEGDKAL 195 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 + F T + RLGG+EFAA A+ E+ I + L +IE + Sbjct: 196 IEAASVFRETFRTSDIIARLGGDEFAALAIDMKEENPEIFTSRLDYLIEKQNEQENRTYK 255 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 + I+I + + I +I +AD+ +Y KK + Sbjct: 256 LSISIGGSFQDPENPRSIDELISQADKLMYEQKKQKK 292 >gi|288957352|ref|YP_003447693.1| diguanylate cyclase [Azospirillum sp. B510] gi|288909660|dbj|BAI71149.1| diguanylate cyclase [Azospirillum sp. B510] Length = 595 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS--------IVFFDIDYFKQINDNFGHP 149 R+ +LS D L+GL N F L +E +S +++ D+D FK +ND GH Sbjct: 412 ERLRRLSERDGLTGLFNRRTFFERL---DESISRPDSGPSALLYVDLDNFKAVNDLHGHQ 468 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ + L GRLGG+EF + E +A I+A L + + Sbjct: 469 QGDAVLKAIGTLLSTGVRPGDLPGRLGGDEFVLWLGRTDEAKARIVAERLLTGM-RELAH 527 Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 +S+GP + +S GIA E + + RAD A+Y AKKSG+ Sbjct: 528 LSAGPEKPLGLSIGIAVHSPGRGETVRELTERADAAMYHAKKSGKG 573 >gi|117619156|ref|YP_858404.1| sensory box protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560563|gb|ABK37511.1| sensory box protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 333 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 19/165 (11%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK- 153 QL+ D L+G + ++ +++ S++ D+D FKQINDN GH GD+ Sbjct: 175 QLAETDALTGAASRYRLERAIRQECERAKRFHQPFSVIAMDVDDFKQINDNHGHHAGDQT 234 Query: 154 ---VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 ++A + + + + R GG+EF + + ++A+ LR+++ S++ Sbjct: 235 LINIVALVRSHIREID----LIARWGGDEFMVVLPNTGRLDGRLVADKLRELLVQSRV-- 288 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 IT+S G+AE E +S ++ R D+ALY AK +G+N++ Sbjct: 289 --CQHFDITMSFGLAEYQPDEHMSQLMVRVDRALYQAKLTGKNQI 331 >gi|110597553|ref|ZP_01385839.1| GGDEF domain [Chlorobium ferrooxidans DSM 13031] gi|110340872|gb|EAT59346.1| GGDEF domain [Chlorobium ferrooxidans DSM 13031] Length = 430 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 9/172 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ +L D + L N+ F L S K+S+ DID+FK+ ND GH G Sbjct: 251 KLDELHIRDEKTNLYNYRHFKDRLITEVERAKSLESKVSLAMIDIDHFKRYNDAHGHIAG 310 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 D V+ L++ + R GGEEFA + A +A LRK+I + Sbjct: 311 DHVLEILAELISSQCRATDVPSRFGGEEFAVLFPKTDSDTAREIAERLRKLISIEPFPHE 370 Query: 211 SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 P +T+S GIA T+I AD+ALY AK GRN VV F+ + Sbjct: 371 QHQPEGQLTVSIGIATFPGDAADWYTLINNADRALYKAKSCGRNNVVTFASM 422 >gi|86360462|ref|YP_472350.1| hypothetical protein RHE_PE00188 [Rhizobium etli CFN 42] gi|86284564|gb|ABC93623.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 280 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 1/125 (0%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 + FDID FK+IND GH GD V+ + ++ GR+GGEEF + + Sbjct: 154 LAVFDIDNFKRINDRLGHHAGDLVLRDFAHRIHQNVRRNDCFGRVGGEEFLLVMPATGPE 213 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +A + + +I S+ + P T SAGIA + S + RADQALY AK S Sbjct: 214 DALAMVERMLTVIRFSRP-LPDSPDFSYTCSAGIAACVPTDSASELYRRADQALYDAKMS 272 Query: 251 GRNRV 255 GR+RV Sbjct: 273 GRDRV 277 >gi|323699522|ref|ZP_08111434.1| diguanylate cyclase [Desulfovibrio sp. ND132] gi|323459454|gb|EGB15319.1| diguanylate cyclase [Desulfovibrio desulfuricans ND132] Length = 348 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 8/134 (5%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALG 186 L ++ D+D+FKQ+ND +GH GD V+ L+ ++V F R GGEE G Sbjct: 211 LCLMMIDVDHFKQVNDTYGHQAGDDVLRALA-RIVNTHAIQYDGFAARYGGEELVVVVQG 269 Query: 187 SSEQEAAILANDLRKIIENSQINISS-----GPSIHITISAGIAERCHKEPISTIIYRAD 241 AA+ A LR +E + + ++ T+S G+A S ++ AD Sbjct: 270 MDLNRAAVKAEALRADVERYDFRVRTDGKLGDTPVNFTVSMGVARMKVGWTASDLVGAAD 329 Query: 242 QALYVAKKSGRNRV 255 ALY AK +GRNRV Sbjct: 330 AALYQAKDTGRNRV 343 >gi|323496216|ref|ZP_08101274.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] gi|323318493|gb|EGA71446.1| GGDEF family protein [Vibrio sinaloensis DSM 21326] Length = 305 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 17/164 (10%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+GL+N +F +++ S + +++ DID FK+IND GH VGD+VI Sbjct: 144 LDELTGLMNRRSFFDAAKRFLTTRNSEQLECALLMLDIDEFKEINDTHGHLVGDEVI--- 200 Query: 159 SDQLVVVFGTPMFVG----RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 +Q+ V + + G RLGG+EFA ++A+ +A + + ++ S P Sbjct: 201 -NQVARVLNSHVREGDILARLGGDEFAIILPDLDAEKASSVAQRMCASVRALKLTQLSEP 259 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + +T+S GI I + RAD+ALY AK++G+N+ C Sbjct: 260 -LKVTVSIGITGIHLSDNQIKHALSRADKALYHAKETGKNKFYC 302 >gi|295107847|emb|CBL21800.1| diguanylate cyclase (GGDEF) domain [Ruminococcus obeum A2-162] Length = 362 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 9/163 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGD 152 N+ ++ D L+G N A + + +EK + V D+D FK +ND +GH VGD Sbjct: 194 NQNGEIIAYDGLTGAYNKRATEAHINKILTQMPDEKGTFVILDVDKFKDVNDRYGHAVGD 253 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INIS 211 V+ L+ F +GR+GG+EF + +E I + ++K+IEN + + Sbjct: 254 TVLHELAKTFFRHFRKDDIIGRIGGDEFVIYMRNTESKE--IASARVKKLIENVRSLPFE 311 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253 H+TIS GIA +Y+ AD ALY AK++GR+ Sbjct: 312 EMKRNHVTISVGIAFVPEAGNCYMDLYKNADTALYEAKQNGRD 354 >gi|238923915|ref|YP_002937431.1| diguanylate cyclase [Eubacterium rectale ATCC 33656] gi|238875590|gb|ACR75297.1| diguanylate cyclase [Eubacterium rectale ATCC 33656] Length = 346 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 16/233 (6%) Query: 36 SIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93 +I + V IA I L+ + P Y L+ ++++++S+ +IS + L++ + +L + Sbjct: 119 AILLCCVYAIALIILYMLDGFYAPLYKLDSVVIKSISIAMISGVVFLIITCMM-CLLHFM 177 Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGH 148 + + ++ D L+ L N ++ L + E + + DID FK+IND+FGH Sbjct: 178 SSEEGAMEKQAQFDALTELPNRFYMMAKLKNLFEAEKQGEYFLAMIDIDDFKKINDSFGH 237 Query: 149 PVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 VGD + L+ +V G + R GGEEF + ++LR I + Sbjct: 238 NVGDDALKMLARTIVNKARGVELSYCRWGGEEFLLLGKCVDGEVPKNFLDELRVEINSKS 297 Query: 208 INISSGPS-IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S G + +TI AG + + +KE I+ + D+ LYV K +G+N+VVC Sbjct: 298 FWTSKGSGRMTVTIGAGKYKVGQDYKEWINFV----DKQLYVGKCTGKNKVVC 346 >gi|229051019|ref|ZP_04194567.1| Sensory box protein [Bacillus cereus AH676] gi|228722328|gb|EEL73725.1| Sensory box protein [Bacillus cereus AH676] Length = 735 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469 >gi|237808077|ref|YP_002892517.1| diguanylate cyclase with PAS/PAC and GAF sensors [Tolumonas auensis DSM 9187] gi|237500338|gb|ACQ92931.1| diguanylate cyclase with PAS/PAC and GAF sensors [Tolumonas auensis DSM 9187] Length = 543 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 21/183 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQI 142 ++ L S + +L+ D L+GL F L N+K L+++F D+D FK + Sbjct: 368 VEALRQSEEKHRRLAHYDVLTGLPTRVLFSDRLKQAMRSAKRNKKNLALMFLDLDKFKPV 427 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRK 201 ND FGH VGD+++ ++ +++ V R+GG+EF ++ E+A +A +R+ Sbjct: 428 NDTFGHAVGDRLLKEVASRMLGCVRESDTVCRIGGDEFVILLHDVADAESAFNVAEKIRQ 487 Query: 202 IIENS------QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + Q+NIS I + G+ ER T+ AD A+Y AK++GR++ Sbjct: 488 ALNQPFKLAGHQMNISCSIGIALYPENGVDER-------TLTKNADMAMYRAKENGRDQA 540 Query: 256 VCF 258 F Sbjct: 541 QVF 543 >gi|56966618|pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-Digmp gi|56966619|pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-Digmp gi|158430933|pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp And Gtp-Alpha-S gi|158430934|pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp And Gtp-Alpha-S Length = 459 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 9/164 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+GL N L S + +S + DID+FK+IND FGH +GD+V Sbjct: 286 ELAVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEV 345 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + +L R GGEEF ++ +A +A +R + S ++ G Sbjct: 346 LREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGR 405 Query: 215 S-IHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +++TIS G+ A + ++ RAD+ +Y AK SGRN VV Sbjct: 406 EMLNVTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVV 449 >gi|115522715|ref|YP_779626.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] gi|115516662|gb|ABJ04646.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] Length = 506 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 21/174 (12%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGH 148 + R+ +LS D L+GL N F +++ + ++++ D D FKQ ND+ GH Sbjct: 329 AEQRLEELSVTDPLTGLTNRRKFDAAIDEEWRRAQRRGSPMALLMIDADLFKQFNDSHGH 388 Query: 149 PVGDKVI----AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GD+++ +SD V R GGEEFA G + +A +A +R +E Sbjct: 389 QAGDQMLIGIAVCISDS---VHRAGDCAARFGGEEFAVLLPGLAAPDALSVAESIRTKVE 445 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRNRVV 256 ++ + +TIS G+A + S ++ AD+ALY AK+SGRN V Sbjct: 446 RWSLDQTG-----VTISVGVASLIPAPSVHWSELVEAADKALYAAKESGRNACV 494 >gi|238895576|ref|YP_002920311.1| hypothetical protein KP1_3659 [Klebsiella pneumoniae NTUH-K2044] gi|238547893|dbj|BAH64244.1| hypothetical protein KP1_3659 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 636 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + R+ + D L+G+ N +F ++ + Y ++ FD+D FK +N Sbjct: 213 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVN 272 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GDK++ L+ +L T + RLGG+EFA + +E+ A AN +R+ I Sbjct: 273 DTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALERANVIREKI 332 Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 ++QINI + I I IS G E + +Y+ AD ALY AKK G V Sbjct: 333 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 383 Query: 257 CF 258 F Sbjct: 384 IF 385 >gi|237809101|ref|YP_002893541.1| diguanylate cyclase [Tolumonas auensis DSM 9187] gi|237501362|gb|ACQ93955.1| diguanylate cyclase [Tolumonas auensis DSM 9187] Length = 242 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 12/218 (5%) Query: 52 YIGLTPFYGLEYILVENLSLVIISITISLLLGYIS--GSILKELFISYN-RISQLSRIDC 108 YI L Y +L E SL + L I+ G +++ + N + + ++ D Sbjct: 17 YIQLEKQYTGHPLLAELDSLHRQYQRLERRLNKIARIGDLMQAQIMDLNSELDKRAKTDP 76 Query: 109 LSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+GL N + + ++L ++ D+DYFK++ND FGH GD ++ ++ Sbjct: 77 LTGLFNRGGLYPQMFALKKQLELNHSCFGVLLLDLDYFKEVNDQFGHLQGDHLLISVAAI 136 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 L + T R GGEEF SE+ +A ++ + I + + + +++ S Sbjct: 137 LQSICSTQGVCARWGGEEFLILMPDCSEKSLHTMAENIMQAIRS--VPLPGNDERYLSAS 194 Query: 222 AGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G+ E I I +AD A+Y AK GR+++V +S Sbjct: 195 IGVYFCREAEMIDDSIRKADLAMYKAKAQGRDQLVTYS 232 >gi|206578357|ref|YP_002237583.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Klebsiella pneumoniae 342] gi|206567415|gb|ACI09191.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Klebsiella pneumoniae 342] Length = 636 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + R+ + D L+G+ N +F ++ + Y ++ FD+D FK +N Sbjct: 213 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYQGCAVVMLFDLDSFKDVN 272 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GDK++ L+ +L T + RLGG+EFA + +E+ A AN +R+ I Sbjct: 273 DTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALERANVIREKI 332 Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 ++QINI + I I IS G E + +Y+ AD ALY AKK G V Sbjct: 333 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 383 Query: 257 CF 258 F Sbjct: 384 IF 385 >gi|120553130|ref|YP_957481.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei VT8] gi|120322979|gb|ABM17294.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei VT8] Length = 784 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 26/219 (11%) Query: 62 EYILVENLSLVIISITISLLLGYISGSILKELFISYNR-----------ISQLSRIDCLS 110 Y+ +ENL+ I I +++L ++ +E + R +S + D L+ Sbjct: 563 RYVTLENLAGRIYDIDLTML--HLRRGERQERLVFVLRDDSERRREEERLSWEATHDALT 620 Query: 111 GLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 LLN AF +SL + + + V D+D+FK +ND GH VGD ++ L++ Sbjct: 621 QLLNRRAFTASLLKALADAPGQPVPAVLMMIDLDHFKPVNDEGGHLVGDDLLKRLAEVFK 680 Query: 164 VVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITIS 221 V RLGG+EFA A G + EA LA +R ++ +I G +T+ Sbjct: 681 QAVRQSDTVARLGGDEFAILLPACGMARAEA--LAESIRAKVQALKIE-HDGRQFGVTVC 737 Query: 222 AGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G+ H ++ RAD+ Y+AK GRN VV + Sbjct: 738 IGLTPVSAHDNGPKEVMARADEGCYIAKSRGRNCVVSIA 776 >gi|330501729|ref|YP_004378598.1| diguanylate cyclase [Pseudomonas mendocina NK-01] gi|328916015|gb|AEB56846.1| diguanylate cyclase [Pseudomonas mendocina NK-01] Length = 345 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 8/170 (4%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFI-------SSLGSYNEKLSIVFFDIDYFKQIND 144 +L + +R + +D L+ L N + + ++ + +L +++ D+D+FKQ+ND Sbjct: 169 DLRDALSREQRKGMLDALTQLWNRAGLLHFLPLEQAAAERHQLRLGLIYCDLDHFKQVND 228 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 GH GD V+ + ++ V R GGEEF EQE +A +R I Sbjct: 229 THGHDGGDHVLWESARRMSAAVRPQDVVTRNGGEEFVILCQVHDEQELLQIAERIRLAIA 288 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + + + + + T S G E + RADQALY AK+ GRNR Sbjct: 289 SQPMQLENA-ELQQTTSLGCTLLGPGENAVDGLKRADQALYRAKRGGRNR 337 >gi|295106457|emb|CBL04000.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain [Gordonibacter pamelaeae 7-10-1-b] Length = 618 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 9/154 (5%) Query: 102 QLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAF 157 + S+ID L+ LN +SL +++ L + D+D FKQIND+ GH VGD+V+A Sbjct: 465 RQSQIDGLTKALNKVTVEEKIAASLAAHDRGL-LFMIDVDDFKQINDSNGHLVGDQVLAA 523 Query: 158 LSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIH 217 ++ L VF VGR+GG+EF A A G+ E A + + R+ + + I+ + Sbjct: 524 IARALFDVFRCDDPVGRVGGDEFVAFARGADE---ADVVDAKRRALRDRTEFITKDLGVS 580 Query: 218 ITISAGIAERCHK-EPISTIIYRADQALYVAKKS 250 +++S G+A H + + AD+A+Y K+ Sbjct: 581 VSLSIGVARYPHDGKTYQELFDAADRAMYREKQE 614 >gi|254821321|ref|ZP_05226322.1| diguanylate cyclase [Mycobacterium intracellulare ATCC 13950] Length = 357 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 29/181 (16%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQI 142 +++ L++ +R ++ D L+GLLN A + G+++ L++ D+D FK++ Sbjct: 183 VVRALWVDLSRANR----DPLTGLLNRRACDREIVGRMLAGAHHMFLAVAMVDLDRFKEL 238 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH GD+ + ++ L G VGR+GGEEF A + +++Q L R++ Sbjct: 239 NDTRGHAAGDEALIEVAGTLTTACGETAIVGRVGGEEFLVADIVTADQ----LPEWGRQL 294 Query: 203 IEN-SQINISSGPSIHITISAGIAERCHKEPIS--------TIIYRADQALYVAKKSGRN 253 + + +N S +T S GIA + +S ++ +AD A+Y AK+ G N Sbjct: 295 CDAIAAMNAS------VTASVGIATLALRSVVSDYAEHAFHQLVAQADTAMYEAKRCGGN 348 Query: 254 R 254 + Sbjct: 349 Q 349 >gi|229130597|ref|ZP_04259553.1| Sensory box protein [Bacillus cereus BDRD-Cer4] gi|229147888|ref|ZP_04276229.1| Sensory box protein [Bacillus cereus BDRD-ST24] gi|228635538|gb|EEK92027.1| Sensory box protein [Bacillus cereus BDRD-ST24] gi|228652936|gb|EEL08818.1| Sensory box protein [Bacillus cereus BDRD-Cer4] Length = 735 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469 >gi|254413672|ref|ZP_05027442.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179779|gb|EDX74773.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1341 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 77/172 (44%), Gaps = 16/172 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +SQ S D L+GL N SL + + I+ DID+FK ND FGH GD Sbjct: 1173 LSQQSIRDALTGLFNRRYMEESLEREIHRAQRHQRPMGIIMLDIDHFKHFNDTFGHEAGD 1232 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA----AALGSSEQEAAILANDLRKIIENSQI 208 V+ L L R GGEE A+L ++Q A + +D++ + QI Sbjct: 1233 AVLRELGIFLQRSIRASDIACRYGGEELMLILPDASLADTKQRAEQIRHDVKGL----QI 1288 Query: 209 NISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I IS G+A H +I AD+ALY AK GR+RVV S Sbjct: 1289 EYHHKLLDAIAISVGVAAFAEHGSTAQELIAAADRALYQAKAQGRDRVVTAS 1340 >gi|148358169|ref|YP_001249376.1| GGDEF/EAL domain-containing sensory box protein [Legionella pneumophila str. Corby] gi|148279942|gb|ABQ54030.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella pneumophila str. Corby] Length = 972 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 4/136 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N+KL+++F D+D FKQIND+ GH +GD ++ LS++ + + + RLGG+EF Sbjct: 576 NQKLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILE 635 Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243 +++A +A R+I SQ + + ++ S GIA H + T++ AD A Sbjct: 636 NIMQDKDAESIAKKCREIC--SQPFVIESQELLVSTSIGIAIYPDHGKDAKTLMRNADTA 693 Query: 244 LYVAKKSGRNRVVCFS 259 +Y +K G+N F Sbjct: 694 MYQSKIRGKNNWTVFQ 709 >gi|88859132|ref|ZP_01133773.1| putative two-component response regulator [Pseudoalteromonas tunicata D2] gi|88819358|gb|EAR29172.1| putative two-component response regulator [Pseudoalteromonas tunicata D2] Length = 312 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 8/139 (5%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL--VVVFGTPMFVGRLGGEEFAAAA 184 E++S++ DID+FK NDN+GH GD+ + ++ L + G+ FV R GGEEFAA Sbjct: 176 EEMSMLLIDIDHFKLFNDNYGHRAGDECLKMVASTLKSLCQRGSD-FVARYGGEEFAAVF 234 Query: 185 LGSSEQEAAILANDLRKIIENSQI--NISSGPSIHITISAGIAERCHK--EPISTIIYRA 240 +A A L+K + + I SS S+ +TIS G+A + ++I A Sbjct: 235 SPCHLDDAIKQAERLQKAVYDLSIPHKFSSTASV-VTISIGVASSNLNGVNSVESLIEMA 293 Query: 241 DQALYVAKKSGRNRVVCFS 259 D+ LY+AK SGRN+V ++ Sbjct: 294 DKGLYLAKDSGRNQVKSYT 312 >gi|332296910|ref|YP_004438832.1| diguanylate cyclase [Treponema brennaborense DSM 12168] gi|332180013|gb|AEE15701.1| diguanylate cyclase [Treponema brennaborense DSM 12168] Length = 381 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 20/238 (8%) Query: 23 SPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLL 82 SP ++ I +I SI I +F + Y L + +ENL ++ I I+ Sbjct: 153 SPVSYAILLAILLSIDILETVFFQTL--------DKYTLAALCIENLFILYCGIFIN--- 201 Query: 83 GYISGSILKELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNEKLSIVFFDIDYF 139 Y S + E+ I+ I Q +D L+ L N A +I++ S ++ DID F Sbjct: 202 TYFSRMKITEIKITAELIRQRD-MDSLTQLKNRRAAERYINTFTSNAGLHALFILDIDNF 260 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL 199 K +ND FGH GD+++ L+ L+ +F V RLGG+EF ++ A A D Sbjct: 261 KGVNDTFGHNTGDELLKQLAADLLALFRPEDCVSRLGGDEFLIFMPCVADPNDAREAAD- 319 Query: 200 RKIIENSQINISS-GPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNR 254 +II N ++ G ++ ++ S GIA + RAD ALY +K+ G+ R Sbjct: 320 -RIIRNFPPAVTEGGKTVAVSCSIGIAFSHDDRSRFYEDLYTRADAALYKSKQYGKCR 376 >gi|323496706|ref|ZP_08101754.1| hypothetical protein VISI1226_11162 [Vibrio sinaloensis DSM 21326] gi|323318240|gb|EGA71203.1| hypothetical protein VISI1226_11162 [Vibrio sinaloensis DSM 21326] Length = 493 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 81/167 (48%), Gaps = 10/167 (5%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 ++ L+ D L+ L N F +L + EK L I FDID FKQ ND GH VGD+ + Sbjct: 322 KLQYLAMHDPLTSLANRRGFEHALLAMEEKRFLGIGVFDIDDFKQFNDLHGHEVGDQALR 381 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI-SSGPS 215 ++ + V R GGEEF A G S+Q A + ++ I + S+G Sbjct: 382 HIAVLMTDSTRQCDLVARFGGEEFVVAISGESDQLIATIFERTQQQISLQGYRLPSTGED 441 Query: 216 IHITISAGIA---ERCHKE----PISTIIYRADQALYVAKKSGRNRV 255 +T+SAG C++ I+ I +AD LY AK G+NRV Sbjct: 442 CALTMSAGAVIYRSHCYESYRHLWITQGIRQADGLLYQAKAQGKNRV 488 >gi|317473300|ref|ZP_07932595.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316899136|gb|EFV21155.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 483 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 13/162 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 R + + D L+G+ N + +++ ++F D+D FKQIND+ GH GDK Sbjct: 301 RWKEAADNDALTGINNRKGLEEKILKIMKENWDSSGVLLFLDLDDFKQINDSKGHAFGDK 360 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ +++++ + VGR+GG+EF G ++AA+ K E + I G Sbjct: 361 VLRTVAEKIKSCVRSTDVVGRIGGDEFIVFLNGIGGKDAAL------KKAEEIEQKIQDG 414 Query: 214 -PSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 +T+S GIA+ +I RADQALY +K G+N Sbjct: 415 FHGYPVTVSIGIAQFPEDGAEFDVLIKRADQALYYSKNKGKN 456 >gi|303238430|ref|ZP_07324965.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus CD2] gi|302594134|gb|EFL63847.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus CD2] Length = 893 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 20/185 (10%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFIS----SLGSYNEK---LSIVFFDIDYFKQIND 144 EL S + L+ D L+ L N FI +L S +K L+I++ D++ FKQ+ND Sbjct: 445 ELKKSREELKHLAYYDALTDLPNRLYFIEYIKETLESNKDKYLILAIMYIDLNRFKQVND 504 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA--------ILA 196 GH VGD ++ ++ + + F+ R+GG+EF + + +AA +LA Sbjct: 505 TLGHEVGDMLLKEVAKRFKSISNNDTFIARIGGDEFVVILKNADKLKAAETASFINKVLA 564 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + + N +++ + SI I++ + H ++I AD ++Y AKK G N Sbjct: 565 DKISVTFNNKGMDLFTSGSIGISLYPLDSNDIH-----SVIKNADMSMYTAKKEGGNTYR 619 Query: 257 CFSDI 261 + +I Sbjct: 620 FYEEI 624 >gi|228903827|ref|ZP_04067942.1| Sensory box protein [Bacillus thuringiensis IBL 4222] gi|228855736|gb|EEN00281.1| Sensory box protein [Bacillus thuringiensis IBL 4222] Length = 735 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVMFLDLDRFKKINDR 355 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++++L + V R GG+EF +++AI + I N Sbjct: 356 LGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469 >gi|170692754|ref|ZP_02883916.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M] gi|170142410|gb|EDT10576.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M] Length = 692 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 11/165 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL-----GSYNEK--LSIVFFDIDYFKQINDNFGHPV 150 +I +L+ +D L+GL N + + + ++ +I+F D+D FK IND+ GH Sbjct: 253 GQIVRLATLDTLTGLPNRATLTERIERAIYAARRQRSLFAILFMDLDGFKTINDSLGHSA 312 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENSQIN 209 GD+V++ + +L+V V RLGG+EF + +S +AA LA + + + + Sbjct: 313 GDQVLSAFAQRLLVCVRAGDTVARLGGDEFVVLSENLASRDDAATLAEGVLERMRHDTWT 372 Query: 210 ISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 S + + S GIA + + T++ AD A+Y AK++GR+ Sbjct: 373 DSQ--PLQVMPSIGIALFPEDGDTVDTLLKHADAAMYEAKRAGRS 415 >gi|32476363|ref|NP_869357.1| response regulatory protein [Rhodopirellula baltica SH 1] gi|32446908|emb|CAD78814.1| probable response regulatory protein [Rhodopirellula baltica SH 1] Length = 308 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 10/162 (6%) Query: 100 ISQLSRIDCLSGLLNHS----AFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGD 152 + + S ID ++G+ N F + L +++ + DID FK IND+ GH +GD Sbjct: 134 LQEASHIDSMTGIANRRRCDIEFQTRLELFSQSGVPFCVAIVDIDCFKSINDSGGHDLGD 193 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 VI + +L + V R+GGEEFA +S E L RK IE + Sbjct: 194 HVICKVGQELREISRPGDLVARIGGEEFAIIFTNTSIDELGTLQQQHRKAIERLDFHPE- 252 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +I +T+S G + + RAD ALY AKK+GRN+ Sbjct: 253 --NIRVTVSVGGTCVLASDDSRSAFRRADLALYAAKKNGRNQ 292 >gi|95930722|ref|ZP_01313455.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95133202|gb|EAT14868.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 637 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 11/172 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPV 150 N + + S D ++GL N G + + ++ DID+FKQ+ND +GH Sbjct: 460 NTLRESSLRDPMTGLFNRRFLQDQAGHLIAGTLRRKKNIGLLMCDIDFFKQVNDQYGHDA 519 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+V+ S + V R GGEEF +A +A +R IE+ + Sbjct: 520 GDQVLKETSAIIQKSVRESDVVVRFGGEEFLVILTDIEAGDAMSVAEKIRSNIEDKVFMV 579 Query: 211 SSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 GP I TIS G++E E I AD ALY AK++GRNR + F + Sbjct: 580 --GPEKIRKTISLGVSEYPGDSEGFWQSIKYADVALYRAKETGRNRALRFEE 629 >gi|330878877|gb|EGH13026.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 763 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 40/225 (17%) Query: 67 ENLSLVIISITISLLLGYISG------------------SILKELFISYNRISQLSRIDC 108 + L L I +IT+ ++ G IS ++L +L + + Q++ D Sbjct: 235 QQLGLTIAAITLLIIAGSISAAMADKKLQGKEHDLQRVNTLLSQLDQARVSLQQVAHYDP 294 Query: 109 LSGLLNHSAF----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 L+ L+N F L + L+++F DID+FK+IND+ GH GD+++ ++++ Sbjct: 295 LTNLINRRGFNQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAER 354 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220 + V R GG+EF +EA LA+ ++++ + I+ +G + +T Sbjct: 355 IRSATRVQDVVARFGGDEFCILLSIPDYEEARHLAH---RVMDKMKETIALAGRRMVMTT 411 Query: 221 SAGIA------ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S GIA C + ++ AD ALY +K +GRNRV FS Sbjct: 412 SIGIAVFPRDGSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451 >gi|288934500|ref|YP_003438559.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22] gi|288889209|gb|ADC57527.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22] Length = 636 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + R+ + D L+G+ N +F ++ + Y ++ FD+D FK +N Sbjct: 213 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYQGCAVVMLFDLDSFKDVN 272 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GDK++ L+ +L T + RLGG+EFA + +E+ A AN +R+ I Sbjct: 273 DTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALERANVIREKI 332 Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 ++QINI + I I IS G E + +Y+ AD ALY AKK G V Sbjct: 333 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 383 Query: 257 CF 258 F Sbjct: 384 IF 385 >gi|260598122|ref|YP_003210693.1| RNase II stability modulator [Cronobacter turicensis z3032] gi|260217299|emb|CBA31265.1| Protein gmr [Cronobacter turicensis z3032] Length = 684 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 18/184 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNE-KLSIVFFDIDYFK 140 SG+ + E + R+ L+ D ++GL N H ++ E ++ IV+ D+D FK Sbjct: 239 SGTDITEERRAQERLRVLANTDAITGLPNRNAIHEMISDAIAKRGETQVGIVYLDLDNFK 298 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 ++ND +GH GD+++ +S ++ + RLGG+EF A +S +AA+ A R Sbjct: 299 KVNDAYGHMFGDQLLQAVSLAILSCLEKDQVLARLGGDEFIVMATDTS--QAALEAMSSR 356 Query: 201 KIIENSQ------INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 I I + +G S+ I ++ H + ++I AD A+Y AK++GR + Sbjct: 357 IITRLKHPFRIGLIEVYTGCSLGIALAPQ-----HGDDRESVIRNADTAMYTAKENGRGK 411 Query: 255 VVCF 258 F Sbjct: 412 FCVF 415 >gi|256371938|ref|YP_003109762.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans DSM 10331] gi|256008522|gb|ACU54089.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans DSM 10331] Length = 626 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 16/163 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+S L+ D L+GL N AF +L E+++++ D+D FK +ND +GH G Sbjct: 117 RLSMLATRDPLTGLPNRRAFADALQRSWARAKRTGERVTVIALDLDDFKHVNDTYGHRRG 176 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA---ILANDLRKIIENSQI 208 D+V+A L+ +L V R GG+EF L + +EAA +LA L + ++ Sbjct: 177 DEVMAELAHRLAKAVRATDVVARTGGDEF-GLVLDPTGEEAAVEPVLAR-LERELQRPLA 234 Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKS 250 + G + SAGIA ++ ADQALYVAK + Sbjct: 235 TLDGG---RLLASAGIASSDALTMEADALLDAADQALYVAKHA 274 >gi|209546601|ref|YP_002278519.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537845|gb|ACI57779.1| diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 532 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 5/157 (3%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 SR D L+GL N + + +++ DID+FK+IND F H +GD V+A ++ Sbjct: 373 SRTDPLTGLGNRRELQLRCRDWADTGVTHAALMLCDIDHFKRINDVFSHSIGDVVLARVA 432 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 D L R+GGEEF G+ +AA A LR +++ + P++ + Sbjct: 433 DLLGDARAEGGLAIRMGGEEFLLLLPGTRAADAAAAAERLRLRVQDHDWS-EVAPTLEVA 491 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S G+A+ E + + AD LY AK +GRNR V Sbjct: 492 CSIGLADWSLAESLEAALQVADANLYAAKNAGRNRCV 528 >gi|124515840|gb|EAY57349.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptospirillum rubarum] Length = 1144 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 23/189 (12%) Query: 90 LKELFISYNRISQLSRI----------DCLSGLLN--HSAFISSLGSYNEKLS-----IV 132 ++ L ++ IS+ R+ D L+GL N H + + +LS + Sbjct: 562 IRHLILTETDISEKKRLEDILKRQAWSDGLTGLPNRTHLEILMDEAIHRSRLSGKGVAVC 621 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEA 192 FFD+D FK +ND FGH GD+++ +S +L + V RLGG+EF L Sbjct: 622 FFDLDGFKPVNDRFGHAFGDRILVEVSHRLQNSVRSGDTVARLGGDEF--VLLLEEIDRN 679 Query: 193 AILANDLRKIIENSQINISSGPSIHITISAGIAERCHKE---PISTIIYRADQALYVAKK 249 A + L +I+E S P ++++A I + E P ++ AD ALY AK+ Sbjct: 680 ATIHQLLARILE-SIARPFEAPGTPLSLTASIGVTIYPEDLSPSDVLLRHADHALYQAKE 738 Query: 250 SGRNRVVCF 258 GRNR V F Sbjct: 739 DGRNRFVLF 747 >gi|157371308|ref|YP_001479297.1| diguanylate cyclase [Serratia proteamaculans 568] gi|157323072|gb|ABV42169.1| diguanylate cyclase [Serratia proteamaculans 568] Length = 516 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 14/178 (7%) Query: 91 KELFISYNR-ISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQI 142 ++ S NR + +L+ +D L+GL N F +L S N + ++++ DIDYFKQ Sbjct: 337 RDQLTSINRTLEELALLDGLTGLANRRQFDIALKNELMRASRNYRSVALLMLDIDYFKQY 396 Query: 143 NDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH GD+ + + L + + + R GGEE A + Q A I A + + Sbjct: 397 NDIYGHVAGDQCLQQIGQMLKGMASRSNDIMARYGGEEMAIILPDTDAQGALIFAERVIE 456 Query: 202 IIENSQINISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRV 255 + +I P ITIS GI + + P+S I +AD ALY AK G+NR+ Sbjct: 457 AVRELKIPHDGNPHGVITISIGIYAKVPHMYNDTPMS-FINQADSALYQAKAQGKNRI 513 >gi|28379449|ref|NP_786341.1| diguanylate cyclase/phosphodiesterase domain-containing protein [Lactobacillus plantarum WCFS1] gi|28272288|emb|CAD65201.1| protein containing diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) [Lactobacillus plantarum WCFS1] Length = 378 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 12/162 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N +A+ ++S +L+++ FDID+FKQ+ND +GH GDK++ ++ Sbjct: 217 DALTKIENFAAYKTAINYQVTSSRKNGSQLTMLMFDIDHFKQVNDTYGHLAGDKILQHVA 276 Query: 160 DQLVVVF--GTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +VF P + R GGEEF EA +A L I + + ++ I Sbjct: 277 QVATIVFHANNPQISLYRTGGEEFNVIFPNYDLTEALAVAEQLFAAINHIAVPVND-HQI 335 Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVC 257 ++IS G++E + T Y R D LY +KK GR ++ Sbjct: 336 QLSISIGLSELAADDQSPTAFYQRVDANLYHSKKHGRMQITA 377 >gi|312879136|ref|ZP_07738936.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM 12260] gi|310782427|gb|EFQ22825.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM 12260] Length = 662 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 19/177 (10%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGH 148 + R+ L+R D L+ L N + F L +L+++F D+D FK +ND FGH Sbjct: 475 TAERMEHLARHDPLTDLPNRALFFDRLDVALALSKRNGTRLALMFVDLDRFKPVNDTFGH 534 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKIIENS- 206 VGD ++ + ++ VGR+GG+EF Q+A ++A LR+ + Sbjct: 535 AVGDVLLREAAGRMRACIRGSDTVGRIGGDEFVVLLPAVETQKAPLVVAEKLRRALARPF 594 Query: 207 QINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +I+ G I I+ S GIA + C +PI + AD A+Y+AK+ G + V F Sbjct: 595 EID---GRRIGISCSIGIAIAPDDGC--DPIE-LAKNADMAMYLAKQQGGDAVRFFG 645 >gi|291619783|ref|YP_003522525.1| YaiC [Pantoea ananatis LMG 20103] gi|291154813|gb|ADD79397.1| YaiC [Pantoea ananatis LMG 20103] Length = 354 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Query: 131 IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ 190 ++ D+D+FK +ND FGH GD ++A +S L G R GG+E S++ Sbjct: 227 LILIDVDHFKNVNDTFGHEAGDFLLAEISGLLRDSVGMKDIPARFGGDELGVIIRDSNDV 286 Query: 191 EAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 + LA L++ I Q+ + + + ++S GIA + I + RAD+ALY K+S Sbjct: 287 DIISLAESLQRNI--GQLRLPASVTFRCSVSIGIASADKADSIHEWLRRADKALYEVKRS 344 Query: 251 GRN 253 GRN Sbjct: 345 GRN 347 >gi|238757825|ref|ZP_04619008.1| hypothetical protein yaldo0001_35840 [Yersinia aldovae ATCC 35236] gi|238704068|gb|EEP96602.1| hypothetical protein yaldo0001_35840 [Yersinia aldovae ATCC 35236] Length = 572 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 13/176 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 +L + R+ +R D L+ L N F L N L+I+ DIDYFK ND Sbjct: 389 KLVKANRRLEIQARTDSLTKLPNRREFKKVLAHEFMRAKRSNSPLAILMIDIDYFKNFND 448 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD + ++ L V R GGEEFAA + + A ++A + + I Sbjct: 449 CYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDQNGANLVAEHILQSI 508 Query: 204 ENSQINISSGPSIHITISAGIA-----ERCHKEPISTIIYRADQALYVAKKSGRNR 254 I +TIS G+ C + ++ ADQALY +KK+GRN+ Sbjct: 509 RAMGIKHGDSKFRKVTISLGVTVYQSRSHCTVTDQADLVQAADQALYYSKKNGRNQ 564 >gi|51244053|ref|YP_063937.1| hypothetical protein DP0201 [Desulfotalea psychrophila LSv54] gi|50875090|emb|CAG34930.1| hypothetical protein DP0201 [Desulfotalea psychrophila LSv54] Length = 363 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 11/159 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-------IVFFDIDYFKQINDNFGHPVGD 152 + + +R D L+ LLN AF S L + +++FD+D FK +ND+ GH GD Sbjct: 199 LKEQARHDGLTKLLNQHAFYSELRRELARAQRRGYCTVLIYFDLDKFKALNDSEGHRRGD 258 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ +++ + R GG+EF S+ +EA + L K +E S + Sbjct: 259 EVLVMVANSMKASLRDNELCARYGGDEFCIILPESTLKEAEKVCQRLCKELEKSLV---- 314 Query: 213 GPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 G + ++ I++ + T++ AD+A+Y AKK G Sbjct: 315 GTGVSCSMGIAISDTANSHDADTLVKEADKAMYEAKKVG 353 >gi|109896955|ref|YP_660210.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica T6c] gi|109699236|gb|ABG39156.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica T6c] Length = 678 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 13/188 (6%) Query: 82 LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFF 134 L ++ ++ +++ +I+QLS +D L+ L+N +F +L N +L+++F Sbjct: 231 LNAVNSTLEEQVSKRTEKIAQLSYLDPLTQLMNRKSFTQTLSKLTARASQSNSELALLFI 290 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+D FK+IND GH +GD V+ ++ + + F +GR G+EF A S Q A Sbjct: 291 DLDGFKKINDTMGHQMGDSVLQEVTKR-IGAFADQNKLGRWNGDEFLVALPYSDAQTAQA 349 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERC--HKEPISTIIYRADQALYVAKKSGR 252 +A+ + I SQ+ + S+H+ + GIA C H + +I AD + K S Sbjct: 350 IASAI--ITSISQVITVNNNSVHLGATVGIA-MCPEHSTEAAELIQFADLVMCEQKASTN 406 Query: 253 NRVVCFSD 260 FS+ Sbjct: 407 RTPALFSN 414 >gi|262043773|ref|ZP_06016876.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038897|gb|EEW40065.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 510 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 21/175 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFG 147 K+ +SY R + ID L+G N AF S + + ++ ++ DID FK IND +G Sbjct: 346 KQRELSYVRQAT---IDALTGCKNRRAFDSDIAAQMNDHQPFALALVDIDNFKSINDTWG 402 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVG--RLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 H GD V+ ++ + + V P+ + R GGEEFA A ++ R ++E Sbjct: 403 HLNGDIVLRNVAREGLQVL-QPLEISLYRYGGEEFAVVF-------PAEHIDNARTLLET 454 Query: 206 SQINISSGP----SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 ++N+ + +T SA + E + EP+ ++ D+ALY AK+ G+NR++ Sbjct: 455 WRVNVERRTWREDGLTVTFSADLGE-WNMEPLDKLVVSVDEALYKAKQQGKNRIL 508 >gi|229105940|ref|ZP_04236564.1| Sensory box protein [Bacillus cereus Rock3-28] gi|228677514|gb|EEL31767.1| Sensory box protein [Bacillus cereus Rock3-28] Length = 881 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 11/176 (6%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 442 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQTSANDVAVMFLDLDRFKKINDR 501 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIE 204 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 502 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSAAFIAEQILTIL- 560 Query: 205 NSQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + +T S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 561 NKPFFIKD-EELSVTPSIGIAMYPDYGNDVTELMKNADMAMYRAKANGKNRFVFFS 615 >gi|167635770|ref|ZP_02394080.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|254742267|ref|ZP_05199954.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B] gi|167528879|gb|EDR91636.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] Length = 735 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH +GD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 355 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 469 >gi|120612174|ref|YP_971852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] gi|120590638|gb|ABM34078.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax citrulli AAC00-1] Length = 872 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 18/174 (10%) Query: 99 RISQLSRIDCLSGLLNHS---AFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGD 152 R+ LS D L+GL N F+++L + + L+++ D+D FK +ND GH +GD Sbjct: 431 RVRHLSLHDTLTGLPNRRRLHQFLATLLESDGPAQPLALLCLDLDRFKPVNDALGHALGD 490 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE------AAILANDLRKIIENS 206 +V+ ++ +L + G RLGG+EF G+ + + AA++A + Sbjct: 491 RVLQEVARRLQALLGPQDIAARLGGDEFVLVLAGAQDPDAIGRRCAAVVAALCEPFAFDG 550 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 QI + G SI + + A + R +E ++ + D ALY AK +GRN C++D Sbjct: 551 QI-VCIGTSIGV-VQAPLHARTAQE----LLRKGDIALYDAKAAGRNTWRCYTD 598 >gi|87122911|ref|ZP_01078777.1| sensory box/GGDEF family protein [Marinomonas sp. MED121] gi|86161811|gb|EAQ63110.1| sensory box/GGDEF family protein [Marinomonas sp. MED121] Length = 806 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 28/207 (13%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 ++Y+L E++ ++I++ IS KE + ++I+ L+ D L+ L N + Sbjct: 335 IKYVLQESIEVLILARDIS---------ARKE---AEDKINHLAYFDSLTHLPNRHWIME 382 Query: 121 SLGSYNE-------KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L S E K +++F D+D FK IND+ GH VGD ++ +++ V+ + V Sbjct: 383 RLESSMEISRERKVKGAVLFLDLDRFKNINDSLGHDVGDLLLQVVANDFKVLAEGDICVA 442 Query: 174 RLGGEEFA------AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE- 226 RLGG+EF L ++ A A + + S+ S +HI++S GI Sbjct: 443 RLGGDEFVFLFPFLEGDLDYINEKVAFFAQQIVQSFNKSKFVGSH--EMHISVSIGITLF 500 Query: 227 RCHKEPISTIIYRADQALYVAKKSGRN 253 +E + ++ +AD ALY AK +GRN Sbjct: 501 DGFEENVGVLLKQADTALYKAKDAGRN 527 >gi|330965690|gb|EGH65950.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 332 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK +ND +GH GD V+ +++ GR+GGEEFAA G + Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVA 247 + A +A L++ I+ ++G + IT S G+ ++ +Y RAD A+Y A Sbjct: 263 PEMAMQIAERLQREIQRQNFQ-ANGSTFSITASQGLTNLGPEDQGLEALYGRADAAMYQA 321 Query: 248 KKSGRNRVV 256 K+ G+N++V Sbjct: 322 KRQGKNQIV 330 >gi|325275267|ref|ZP_08141224.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] gi|324099608|gb|EGB97497.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] Length = 754 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 12/181 (6%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQ 141 +L EL + + Q + D L+ L+N F ++ + +L+++F DID+FK+ Sbjct: 275 LLSELDQARASLQQAAHYDALTNLVNRRGFNQLFAERLAEHLASESRLAVMFLDIDHFKR 334 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 IND+ GH GD+++ +++ + + V R GG+EF +S EA LA ++ Sbjct: 335 INDSLGHHAGDELLKVIANHIKAATRSQDLVARFGGDEFCVVTSLNSRDEARHLA---QR 391 Query: 202 IIENSQINIS-SGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I++ + I G + +T S G++ ++ AD ALY +K +GRN + F+ Sbjct: 392 IMQRMKDPIELCGRRMVMTTSIGVSIFPDDGSSAEELLKHADLALYQSKDNGRNSLNFFN 451 Query: 260 D 260 D Sbjct: 452 D 452 >gi|296105527|ref|YP_003617227.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella pneumophila 2300/99 Alcoy] gi|295647428|gb|ADG23275.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella pneumophila 2300/99 Alcoy] Length = 976 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 4/136 (2%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 N+KL+++F D+D FKQIND+ GH +GD ++ LS++ + + + RLGG+EF Sbjct: 580 NQKLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILE 639 Query: 186 G-SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQA 243 +++A +A R+I SQ + + ++ S GIA H + T++ AD A Sbjct: 640 NIMQDKDAESIAKKCREIC--SQPFVIESQELLVSTSIGIAIYPDHGKDAKTLMRNADTA 697 Query: 244 LYVAKKSGRNRVVCFS 259 +Y +K G+N F Sbjct: 698 MYQSKIRGKNNWTVFQ 713 >gi|294339503|emb|CAZ87862.1| conserved hypothetical protein; putative GGDEF domain [Thiomonas sp. 3As] Length = 368 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 29/256 (11%) Query: 28 MIYFSIFFSIFIATVIFIANI-----FLFYIGLTPFYGLEYILVENL--------SLVII 74 +++F++ S+ + TV + L+ I L +G + L SL+I+ Sbjct: 100 LMHFNLLPSVVLVTVTTFDKLSSGMRRLWLISLPGLFGAAVLTALILRPPVQLESSLLIV 159 Query: 75 SITISLLLGY-ISGSI-----LKELFISYNRISQLSRIDCLSGLL--NH-----SAFISS 121 + T+ LL+ + +S SI ++ + + QL R D +GL +H A + Sbjct: 160 ACTLPLLVVHTLSSSIGSYRLIRTVSRQNKLLEQLRRTDAQTGLFARDHWQQQADAALQL 219 Query: 122 LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 + + ++ D+D+FKQ+ND +GH GD I + + GR GG+EFA Sbjct: 220 FQAVGQPACLLMIDVDHFKQVNDTYGHTAGDDAIRAVGQLIRDCICEEDCAGRYGGDEFA 279 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRA 240 + + +A +A +R E + + P++ ++ S G+A + + A Sbjct: 280 VLCQNTGQPDALGIAERIR--TELLTLRLPHHPNVRLSSSIGVAAAAPAFSNLQAWMQAA 337 Query: 241 DQALYVAKKSGRNRVV 256 D ALY AK GRN+V Sbjct: 338 DAALYSAKHQGRNQVA 353 >gi|291280230|ref|YP_003497065.1| hypothetical protein DEFDS_1854 [Deferribacter desulfuricans SSM1] gi|290754932|dbj|BAI81309.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 361 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 7/135 (5%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVV---VFGTPMFVGRLGGEEFAAA 183 + +SI+ DID FK+ NDN+GH GD V+ ++ L++ V V R GGEEF Sbjct: 229 KPISILMIDIDDFKKYNDNYGHIAGDNVLKKIA--LILQENVKRNNDVVARFGGEEFIIM 286 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI--STIIYRAD 241 + E A ++AN++ K I + I +T+S G + K+ + + +I AD Sbjct: 287 LYDTDEYGAKMIANNILKNINKTNIKHDYATFGRVTVSIGCSTIIPKDNLNPNDLIIIAD 346 Query: 242 QALYVAKKSGRNRVV 256 +ALY AKK G+N+V+ Sbjct: 347 EALYKAKKEGKNKVI 361 >gi|165871333|ref|ZP_02215982.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167640372|ref|ZP_02398636.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|170688171|ref|ZP_02879382.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|170708029|ref|ZP_02898477.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|177651942|ref|ZP_02934525.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|190569113|ref|ZP_03022012.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227818111|ref|YP_002818120.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|229601817|ref|YP_002869563.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] gi|164713000|gb|EDR18528.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167511592|gb|EDR86974.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|170127002|gb|EDS95881.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|170667864|gb|EDT18616.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|172082646|gb|EDT67710.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|190559781|gb|EDV13767.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227006433|gb|ACP16176.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|229266225|gb|ACQ47862.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] Length = 735 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH +GD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 355 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 469 >gi|160893867|ref|ZP_02074650.1| hypothetical protein CLOL250_01421 [Clostridium sp. L2-50] gi|156864519|gb|EDO57950.1| hypothetical protein CLOL250_01421 [Clostridium sp. L2-50] Length = 1273 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 22/185 (11%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISS----LGSYNEKLSIVFF-DIDYFKQI 142 SI +E S I + R D L+G+ NHS F+S L ++E L ++ D+D FK + Sbjct: 387 SIHEEKLQSQELILRAER-DSLTGVYNHSTFVSKVSRFLAEFDETLCALYMIDLDDFKLV 445 Query: 143 NDNFGHPVGDKVI---AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILAND 198 ND GH GD ++ A + + + +G F GRLGG+EF+ +++ A ++A Sbjct: 446 NDALGHYAGDDLLCDTAVVLESVANTYGG--FSGRLGGDEFSMFIPDVVDEDTAYMVAKT 503 Query: 199 LRKIIENSQINISSGPSIHI---TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 L K I + SI I TIS + ++ Y+ADQALY +K+ G++R Sbjct: 504 LNKGIRAIKCKAEHSASIGIAVDTISKSLK-------FDSLYYKADQALYYSKRQGKDRC 556 Query: 256 VCFSD 260 + F + Sbjct: 557 MLFCE 561 >gi|152981019|ref|YP_001354994.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] gi|151281096|gb|ABR89506.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 563 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 17/195 (8%) Query: 80 LLLGY-ISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSI 131 L++G+ ISG E R+ ++ D L+GL N S L + ++ Sbjct: 112 LVVGHDISGQQATE-----ERLRHMATHDELTGLPNRSLLADRLRMAIAQSRRTDRGFAV 166 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 V D+D FK++ND GHPVGD ++ + +L + R+GG+EF A G+ ++ Sbjct: 167 VALDLDGFKKVNDALGHPVGDALLRVAAARLRETLRDVDTLARVGGDEFVAVLHGAVDE- 225 Query: 192 AAILANDLRKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKK 249 + N R++I Q+ G +++++ S G+A H E ++ AD A+Y AK+ Sbjct: 226 -VEIHNVARRMIAAIQLPFEIDGNALYVSTSIGVAIYPAHGETDVKLLAHADSAMYRAKE 284 Query: 250 SGRNRVVCFSDIENN 264 +G+ R + ++ + N Sbjct: 285 TGKARCIIYNHLSFN 299 >gi|149910458|ref|ZP_01899099.1| sensory box protein [Moritella sp. PE36] gi|149806517|gb|EDM66488.1| sensory box protein [Moritella sp. PE36] Length = 627 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 16/178 (8%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISS------LGSYNEKL-SIVFFDIDYFKQINDNFGH 148 S +L+ D L+GL N + L N+ + +++F D+D+FK IND+ GH Sbjct: 187 SQEEFHRLAFFDSLTGLANRRLLNQTIETQYQLAKTNQVVGALLFIDLDFFKAINDSLGH 246 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA------AAALGSSEQEAAILANDLRKI 202 VGD ++ ++++L + F+ RLGG+EF + +EQ A +LA L + Sbjct: 247 AVGDGILVEVAERLKEIPRPEDFIARLGGDEFVILLPDLSENPMHAEQHANLLAEQLIER 306 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCFS 259 I SQ + G +++I S G+ K+ ++ +AD A+Y AK +GR +V F Sbjct: 307 I--SQPYLYKGQALYIGASIGVTLFPSKDQHADDLLKQADTAMYQAKSNGRKKVYFFD 362 >gi|153802390|ref|ZP_01956976.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|124122054|gb|EAY40797.1| GGDEF family protein [Vibrio cholerae MZO-3] Length = 429 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 8/132 (6%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK+IND +GH GD+++ ++ L + R GGEEF S +EA Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWH 358 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + + LR+ +++ + SI T G + T I RAD ALY AK++GRN+ Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPTAISRADTALYQAKEAGRNQ 410 Query: 255 VVCFSDIENNTC 266 V+ S+ EN++ Sbjct: 411 VIADSEKENDSA 422 >gi|28867535|ref|NP_790154.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213971644|ref|ZP_03399752.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato T1] gi|301385613|ref|ZP_07234031.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato Max13] gi|302061519|ref|ZP_07253060.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato K40] gi|302134621|ref|ZP_07260611.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850770|gb|AAO53849.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213923600|gb|EEB57187.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato T1] gi|331014833|gb|EGH94889.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 332 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK +ND +GH GD V+ +++ GR+GGEEFAA G + Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVA 247 + A +A L++ I+ ++G + IT S G+ ++ +Y RAD A+Y A Sbjct: 263 PEMAMQIAERLQREIQRQNFQ-ANGSTFSITASQGLTNLGPEDQGLEALYGRADAAMYQA 321 Query: 248 KKSGRNRVV 256 K+ G+N++V Sbjct: 322 KRQGKNQIV 330 >gi|89092726|ref|ZP_01165679.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Oceanospirillum sp. MED92] gi|89083238|gb|EAR62457.1| Intracellular signaling protein (PAS,GAF,GGDEF domains) [Oceanospirillum sp. MED92] Length = 354 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 28/207 (13%) Query: 64 ILVENLSLVIISITISLLLGYISGSILKELFISYNR-ISQLSRIDCLSGLLNHSAF---- 118 I +++L L+ I + L+ + ++L I NR + + + D L+ + N + Sbjct: 146 IDIDSLQLMASWIEVELIRRH-----QEKLLIELNRRLEEKASTDSLTKIPNRRSLYKHL 200 Query: 119 ---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 ++ + + + ++V DID+FK+IND +GH GDK + ++ L FVGR Sbjct: 201 RKEVNRVNRNHSRAALVMIDIDHFKKINDKYGHQTGDKALIAVARVLQNALRDYDFVGRY 260 Query: 176 GGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEP-- 232 GGEEF L E E + N +++++ ++I++ P +TIS+GI P Sbjct: 261 GGEEF---MLWLPEVEPGQIDNICARLMKDIAEISLLKEP---MTISSGICAFSCATPYI 314 Query: 233 ------ISTIIYRADQALYVAKKSGRN 253 I + +ADQ LY AK +GRN Sbjct: 315 GSVDHMIDRLTAKADQQLYEAKSAGRN 341 >gi|23011596|ref|ZP_00051909.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 527 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 11/175 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 S + E + RI L+ D L+ L N F I++ + ++L+I+F D+D FK Sbjct: 227 SDITERKKTEERIKNLAYFDVLTALPNRRLFTDRLQIAIANAHRHGQQLAIMFLDLDLFK 286 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE-AAILANDL 199 +IND+ GH VGD+V+ + ++ V RLGG+EF E AA LA Sbjct: 287 RINDSLGHGVGDQVLVETAARISHCVREGDTVARLGGDEFTVLLPEIDHMEDAAKLAE-- 344 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 R I Q + +++T S GIA + + +I AD A+Y AK GRN Sbjct: 345 RVIAHVKQPFVVDDNELYVTTSIGIAVYPEDGDSVEALIKNADTAMYRAKDLGRN 399 >gi|326388698|ref|ZP_08210291.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370] gi|326206949|gb|EGD57773.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370] Length = 590 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 17/177 (9%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHP 149 ++ R+ +L+ D L+GL N F+ +L S + + + DID FK +ND+ GH Sbjct: 150 VAEERLWKLANTDPLTGLPNRRRFLENLQSLTDTGAENGIILGLMDIDNFKGLNDSLGHT 209 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDLRKIIE 204 VGD V+ +++++ V RLGG+EFA A+ +E+ A + + L ++I Sbjct: 210 VGDHVLQHVANRIRETLEAEDIVARLGGDEFALILRHCASNTEAEERIARIEDALSELIP 269 Query: 205 NSQINISSGPSIHIT-ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + + S+ +T G A + ++ AD ALY AK +GRNR F+D Sbjct: 270 LGRDSRRVSASLGLTRFPEGGAT------ANELMKHADIALYKAKANGRNRTEFFTD 320 >gi|307822553|ref|ZP_07652784.1| diguanylate cyclase [Methylobacter tundripaludum SV96] gi|307736157|gb|EFO07003.1| diguanylate cyclase [Methylobacter tundripaludum SV96] Length = 325 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 90/202 (44%), Gaps = 18/202 (8%) Query: 68 NLSLVIISITISLLLGYISGSILKE-LFISYNRI-SQLSRIDCLSGLLNHSAF------- 118 N S +I IT S S SI +E + S++ I + + D L+ + N F Sbjct: 120 NESCCLIQITDS------STSIKREKMLRSHSEILKKEATTDSLTDICNRRFFDAHYEMA 173 Query: 119 ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGG 177 ++ LSI DID+FK ND +GH GD I ++ L V R GG Sbjct: 174 VAEAKRQKHPLSIFMVDIDFFKSYNDYYGHIAGDNAIKQVASALKSQLSRATDIVARYGG 233 Query: 178 EEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITISAGIAERCHKEPISTI 236 EEF ++ A A LR + N + +I S P ITIS G+ E + Sbjct: 234 EEFVLVMPHLPQKVAEQFAEKLRSAVFNLAMPHIKSRPFNQITISVGLCTGI-PENDDNL 292 Query: 237 IYRADQALYVAKKSGRNRVVCF 258 + +AD ALY AK GRNR +C Sbjct: 293 LNKADAALYQAKLKGRNRCICL 314 >gi|228942495|ref|ZP_04105031.1| Sensory box protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975429|ref|ZP_04135984.1| Sensory box protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982062|ref|ZP_04142354.1| Sensory box protein [Bacillus thuringiensis Bt407] gi|228777600|gb|EEM25875.1| Sensory box protein [Bacillus thuringiensis Bt407] gi|228784223|gb|EEM32247.1| Sensory box protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817178|gb|EEM63267.1| Sensory box protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 735 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 469 >gi|218674737|ref|ZP_03524406.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56] Length = 482 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 12/164 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-----YNEKLSIVFF--DIDYFKQINDNFGHPVGDKV 154 +LS D L+G+ N A L +E V F D+D+FK+ ND +GH GD+ Sbjct: 218 ELSNTDYLTGISNRRALDLRLDECWAAWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGDRC 277 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 + +++ L VV + +GR GGEEF + A LA +R +E I Sbjct: 278 LTVVANALKAVVESSGGMIGRYGGEEFIVVMPAETPSIAMSLAEKIRMEVEFLAIAHDER 337 Query: 214 P--SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 P S +T+S G+A E + I+ AD ALY AK SGRN Sbjct: 338 PDDSPIVTVSIGVAFTRDDVGEKVERIVREADLALYNAKASGRN 381 >gi|196036537|ref|ZP_03103932.1| sensory box/GGDEF family protein [Bacillus cereus W] gi|228949069|ref|ZP_04111341.1| Sensory box protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195990870|gb|EDX54843.1| sensory box/GGDEF family protein [Bacillus cereus W] gi|228810642|gb|EEM56991.1| Sensory box protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 735 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH +GD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 355 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 469 >gi|169794389|ref|YP_001712182.1| putative GGDEF family protein [Acinetobacter baumannii AYE] gi|169147316|emb|CAM85177.1| putative GGDEF family protein [Acinetobacter baumannii AYE] Length = 593 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 ++ ++ D L+G+ N S ++ + SY +K S ++ DID FK +ND +GH VGD Sbjct: 430 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKHVNDQYGHIVGD 489 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 +VI ++DQL + R GG+EF +A +LA +R I +I++S Sbjct: 490 QVIRRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSG 549 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +H+++S G A ++ AD++L AK GRN V Sbjct: 550 TKEKLHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 591 >gi|157373582|ref|YP_001472182.1| sensory box protein [Shewanella sediminis HAW-EB3] gi|157315956|gb|ABV35054.1| sensory box protein [Shewanella sediminis HAW-EB3] Length = 870 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 9/169 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN---EKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++ Q + D ++ LLN AF L ++ + ++I +FD++ FK IND+ GH GD + Sbjct: 426 RQLRQKANFDSITSLLNRRAFEERLEKFSHDAQSIAICYFDLEQFKLINDSCGHSAGDTM 485 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI--SS 212 +A ++ + + RLGG+EF A + E A L +++I+ + + + + Sbjct: 486 LAMVAKAMQSCLSKDEMLARLGGDEFGLAIRDHNASEVAQL---VKRIVSSVSMQVLRDN 542 Query: 213 GPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G + +SAG+A R +I AD A AK+ G N+V + D Sbjct: 543 GCHYKVGVSAGVAIARAPYISPKELIKDADVACIAAKRKGSNQVHFYDD 591 >gi|71736866|ref|YP_272801.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557419|gb|AAZ36630.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 712 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 18/187 (9%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSI 131 ++++ + S++++L Y ++ + + D L+GLLN ++ ++ L + Sbjct: 254 AMVMTVLDMSVVRDL---YQQLEKQAVTDALTGLLNRRGLYQAVEGMLLRKEQTDKYLVV 310 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSE 189 +F D+D FKQIND GH GD+V+ ++++Q + R+GG+EF L E Sbjct: 311 LFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPE 370 Query: 190 QEAAILANDLRKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVA 247 Q A I + ++ Q++ G I + S GIA C + ++ AD A+Y A Sbjct: 371 QAAKIAEKLIERVSGRRQVD---GIDITLGASVGIATFPDCGSN-LDGLLRAADIAMYEA 426 Query: 248 KKSGRNR 254 K++GR + Sbjct: 427 KRAGRQQ 433 >gi|65317327|ref|ZP_00390286.1| COG5001: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Bacillus anthracis str. A2012] Length = 735 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH +GD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 355 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 469 >gi|326317912|ref|YP_004235584.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374748|gb|ADX47017.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 442 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 13/159 (8%) Query: 103 LSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+ D L+GL N SAF +S + + ++++F D+D FK+IND GH VGD+V+ Sbjct: 277 LANHDSLTGLHNRSAFHNRFERSLSEVRTRGGAVALLFIDLDGFKKINDGHGHKVGDEVL 336 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +++ +L V RLGG+EF L + QE R I S+ G Sbjct: 337 RYVARRLAHAVRGNDTVARLGGDEF-LVMLDTDVQEDLAGQIGSRIISAISEPMDVGGHD 395 Query: 216 IHITISAGIAERCHKE---PISTIIYRADQALYVAKKSG 251 + + S G+A H I ++ RADQA+Y AK+SG Sbjct: 396 VRVGASIGVA--MHPPLAGDIELLMTRADQAMYAAKRSG 432 >gi|196045448|ref|ZP_03112679.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] gi|218906527|ref|YP_002454361.1| sensory box/GGDEF family protein [Bacillus cereus AH820] gi|225867330|ref|YP_002752708.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] gi|228917957|ref|ZP_04081493.1| Sensory box protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228936633|ref|ZP_04099427.1| Sensory box protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229124852|ref|ZP_04254030.1| Sensory box protein [Bacillus cereus 95/8201] gi|229187574|ref|ZP_04314714.1| Sensory box protein [Bacillus cereus BGSC 6E1] gi|196023655|gb|EDX62331.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] gi|218536626|gb|ACK89024.1| sensory box/GGDEF family protein [Bacillus cereus AH820] gi|225788718|gb|ACO28935.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] gi|228595941|gb|EEK53621.1| Sensory box protein [Bacillus cereus BGSC 6E1] gi|228658643|gb|EEL14305.1| Sensory box protein [Bacillus cereus 95/8201] gi|228823068|gb|EEM68906.1| Sensory box protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228841754|gb|EEM86865.1| Sensory box protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 735 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH +GD ++ ++ +L + V R GG+EF SE+ AA +A + I+ Sbjct: 355 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414 Query: 204 ENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 N I + IT S GIA C + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 415 -NKPFFIKD-EELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRFVFFS 469 >gi|149909689|ref|ZP_01898341.1| putative orphan protein; putative conserved domain [Moritella sp. PE36] gi|149807203|gb|EDM67158.1| putative orphan protein; putative conserved domain [Moritella sp. PE36] Length = 548 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 19/169 (11%) Query: 106 IDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 +D +GL N F+ L G N L I+ D+D FK IND GH VGD+VIA ++ Sbjct: 108 LDNCTGLANRFKFLEMLDSKMAEGQGNTALCIL--DLDDFKDINDTLGHNVGDQVIAIIA 165 Query: 160 DQLVVVFGTPMF-------VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 ++ + G P+ + R+GG+EFA + S+ E +A L ++++N + I Sbjct: 166 QRIKLSLGYPLQPNMYKTDIFRIGGDEFAILIMDFSDAED--IAPILNQLLKNIRRKIEL 223 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 SG SI I +S G++ H +++ +AD A+Y K+SG++ V F Sbjct: 224 SGESIVIGVSIGVSISPEHGTCSDSLLKKADMAMYKVKESGKHGVAFFK 272 >gi|160880931|ref|YP_001559899.1| diguanylate cyclase with GAF sensor [Clostridium phytofermentans ISDg] gi|160429597|gb|ABX43160.1| diguanylate cyclase with GAF sensor [Clostridium phytofermentans ISDg] Length = 573 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 10/174 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHP 149 Y+++ Q++ D L+G+ N L Y N+ LS+ DID FK+IND +GH Sbjct: 386 YSKMQQMAIRDSLTGIYNRGQLNVILEQYTKRASEQNKSLSVALLDIDLFKKINDTYGHL 445 Query: 150 VGDKVIAFLSDQLVVVFGT-PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+VI ++ +L V R GGEEF + + L++ I+ + + Sbjct: 446 FGDEVIKMVASKLQEVANCFHGIAARYGGEEFVIVLPDIGILDFYHIVTSLKETIDTTTL 505 Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + I++ +S GI+ ++ RAD A+Y +K++GRN + +DI Sbjct: 506 YFNE-DEINVKVSVGISSYPETSLSCQQLLNRADGAMYYSKRNGRNSITVDNDI 558 >gi|78355914|ref|YP_387363.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218319|gb|ABB37668.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 312 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Query: 121 SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 S+ +++F DID FK +ND +GH VGD V+ ++ + V R GGEEF Sbjct: 161 SMNDVGSPYAVIFVDIDLFKDVNDTWGHIVGDNVLKMVAKTIESSLRPLDAVCRWGGEEF 220 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRA 240 G+++ L LR +++ S I + I +T S G A E ++ RA Sbjct: 221 IICVPGATKDGVMQLMERLRMLVQESWI-MHEQHKIAVTASFGAAICSQGESSESVAQRA 279 Query: 241 DQALYVAKKSGRN 253 D+ LY++K +GRN Sbjct: 280 DEQLYLSKNTGRN 292 >gi|309790253|ref|ZP_07684823.1| response regulator [Oscillochloris trichoides DG6] gi|308227717|gb|EFO81375.1| response regulator [Oscillochloris trichoides DG6] Length = 328 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 7/133 (5%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++R D L+GLLN + + LG+ Y +LSI+ DID+FKQ+ND +GH +GD+ Sbjct: 162 EHIARTDDLTGLLNRRSIMLILGNEADRVRRYQSQLSILMIDIDHFKQVNDRYGHLMGDQ 221 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 V+ + L +GR GGEEF +SE A LA L + I + + + Sbjct: 222 VLRECAGLLRRSIRAIDHLGRYGGEEFLCILPMTSEGAAVDLAERLNRDIAHLRFFANEL 281 Query: 214 PSIHITISAGIAE 226 S ++TIS G++E Sbjct: 282 VSFNVTISVGVSE 294 >gi|290508701|ref|ZP_06548072.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Klebsiella sp. 1_1_55] gi|289778095|gb|EFD86092.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase [Klebsiella sp. 1_1_55] Length = 614 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + R+ + D L+G+ N +F ++ + Y ++ FD+D FK +N Sbjct: 191 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYQGCAVVMLFDLDSFKDVN 250 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GDK++ L+ +L T + RLGG+EFA + +E+ A AN +R+ I Sbjct: 251 DTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALERANVIREKI 310 Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 ++QINI + I I IS G E + +Y+ AD ALY AKK G V Sbjct: 311 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 361 Query: 257 CF 258 F Sbjct: 362 IF 363 >gi|254422490|ref|ZP_05036208.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189979|gb|EDX84943.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 871 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 77/172 (44%), Gaps = 20/172 (11%) Query: 104 SRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 + ID L+GL N SL L D+D+FKQIND +GH VGD V+ Sbjct: 696 TEIDSLTGLYNRRKSTQSLNRLLRLARRQRQPLCFALIDLDHFKQINDQYGHLVGDYVLR 755 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI------ 210 L F + V R GGEEF G E L ++ +N ++I Sbjct: 756 RFGICLRSTFRSEDVVARWGGEEFVIGLYGVDALEGTERLRQLVQVWQNETLDICKDLFL 815 Query: 211 ----SSGPSIHI--TISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRV 255 + + HI T SAGIA + + T+ AD+AL+ AKK GRNRV Sbjct: 816 ESSTGTAQTSHIIATFSAGIAVFPQAADSLQTLYIAADRALHDAKKMGRNRV 867 >gi|163853267|ref|YP_001641310.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163664872|gb|ABY32239.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 700 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 14/178 (7%) Query: 99 RISQLSRIDCLSGLLNHS-------AFISSLGSYNE-KLSIVFFDIDYFKQINDNFGHPV 150 RI ++R D L+ L N + ++++L + E L+++ D+D FK +ND+FGH V Sbjct: 260 RIIHMARHDGLTDLPNRTHLREVGAEWLAALRTAAEAPLAVLCLDLDRFKPVNDSFGHAV 319 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ ++D+L + V RLGG+EFA + AA LA ++IE Sbjct: 320 GDALLRAVADRLRGHVRSHDVVARLGGDEFAVLSRVEDAAAAATLAE---RLIETVAAPY 376 Query: 211 S-SGPSIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 + G ++ I +SAGI AE I ++ AD ALY AK GR V F + T Sbjct: 377 TLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEAKTEGRGTVRLFEPQMDET 434 >gi|116251447|ref|YP_767285.1| transmembrane GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256095|emb|CAK07176.1| putative transmembrane GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841] Length = 709 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 99/203 (48%), Gaps = 32/203 (15%) Query: 69 LSLVIISITISLLLGYISGSILKELFISYNRISQLSRI----DCLSGLLNHSAFI----- 119 LSL +I + LL+G L++L +Q +R D LSGLLN + Sbjct: 265 LSLFLIGV---LLVGASEARRLRQL-------AQTARFEASHDSLSGLLNRQGLLRLLED 314 Query: 120 -SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 S + +L +V D+D FK +ND +GH VGD +I +S+ L+ + RLGG+ Sbjct: 315 LESPDPSSPRLYLV--DLDGFKAVNDAWGHAVGDDLIRIVSNALMTSHPEVLAAARLGGD 372 Query: 179 EFAAAALGSS---EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIST 235 EFA +G + E E AILA E +I+ G +I + S G A R Sbjct: 373 EFALVHVGGAAREEIEEAILA----LFAEPFKID---GRTIEVGASIGAAARDGDISPLE 425 Query: 236 IIYRADQALYVAKKSGRNRVVCF 258 ++ RAD ALY AK +G+ + V + Sbjct: 426 LLRRADMALYRAKANGKGQAVEY 448 >gi|315444736|ref|YP_004077615.1| diguanylate cyclase (GGDEF) domain-containing protein [Mycobacterium sp. Spyr1] gi|315263039|gb|ADT99780.1| diguanylate cyclase (GGDEF) domain-containing protein [Mycobacterium sp. Spyr1] Length = 358 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 11/159 (6%) Query: 104 SRIDCLSGLLNHSAFISS----LGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVI 155 S D L+GL N F S L ++ L++ D+D FKQIND GH GD+++ Sbjct: 194 SHTDPLTGLRNRRGFYRSVRRLLRVAPDRDLNFLTVAMIDLDRFKQINDTRGHATGDRLL 253 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S L VGR+GGEEF A + + + +A LA LR I ++ I++ Sbjct: 254 VSISGCLCHCARGEAVVGRVGGEEFLIAEV-TRDDDAEALAERLRLAIASTSWGITASVG 312 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + G A+ ++ + +I AD A+Y AK+SG N+ Sbjct: 313 VACRRLNGDAD--TRDLLGDLIEAADSAMYEAKRSGGNQ 349 >gi|291525370|emb|CBK90957.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale DSM 17629] Length = 346 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 16/233 (6%) Query: 36 SIFIATVIFIANIFLFYIG--LTPFYGLEYILVENLSLVIISITISLLLGYISGSILKEL 93 +I + V IA I L+ + P Y L+ ++++++S+ +IS + L++ + +L + Sbjct: 119 AILLCCVYAIALIILYMLDGFYAPLYKLDSVVIKSISIAMISGVVFLIITCMM-CLLHFM 177 Query: 94 FISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE-----KLSIVFFDIDYFKQINDNFGH 148 + + ++ D L+ L N ++ L + E + + DID FK+IND+FGH Sbjct: 178 SSEEGAMEKQAQFDALTELPNRFYMMAKLKNLFEAEKQGEYFLAMIDIDDFKKINDSFGH 237 Query: 149 PVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 VGD + L+ +V G + R GGEEF + ++LR I + Sbjct: 238 NVGDDALKMLARTIVNKARGVELSYCRWGGEEFLLLGKCVDGEVLKNFLDELRVEINSKS 297 Query: 208 INISSGPS-IHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 S G + +TI AG + + +KE I+ + D+ LYV K +G+N+VVC Sbjct: 298 FWTSKGSGRMTVTIGAGKYKVGQDYKEWINFV----DKQLYVGKCTGKNKVVC 346 >gi|255100032|ref|ZP_05329009.1| putative signaling protein [Clostridium difficile QCD-63q42] Length = 1181 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 12/168 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPVGDK 153 ++ + + D L+ L N A S + Y K +++ DID FK INDN GH GD Sbjct: 704 KLKERAEKDPLTDLYNKKASQSLIEEYITLDKKRKGALMIIDIDDFKGINDNLGHLYGDA 763 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQINISS 212 V++ +++ L+ +F VGR+GG+EF SE I A +L K E S + Sbjct: 764 VLSEIANDLINLFRATDIVGRIGGDEFIVFIKDISETRDIINKAEELVKTFERSF--LGK 821 Query: 213 GPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 G + I++S GIA+ ++R AD ALY AK G+N C++ Sbjct: 822 GRNYKISLSVGIAKFPQDGMDYMTLFRNADMALYSAKGKGKN---CYT 866 >gi|254513944|ref|ZP_05126005.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF sensor(s) [gamma proteobacterium NOR5-3] gi|219676187|gb|EED32552.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF sensor(s) [gamma proteobacterium NOR5-3] Length = 643 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 29/178 (16%) Query: 100 ISQLSRIDCLSGL---------LNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 + L+ D L+GL LNH+ L + + L+++F D+D+FK IND+ GH + Sbjct: 213 LEHLAHHDALTGLPNRLYLIDKLNHALLSPDLNTAS--LAVLFLDLDHFKDINDSLGHSL 270 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIE----- 204 GD+V+ +S +L + RLGG+EF G S A +A + K+ + Sbjct: 271 GDEVLRAVSRRLSACVRKADVIARLGGDEFTIVLQGIGSSIIAVEVAQKILKVFQEPLTL 330 Query: 205 -NSQINISSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFS 259 + +N+S+ SI I++S G + ++T ++ AD A+Y AK+SGRN + +S Sbjct: 331 SDRTLNVST--SIGISVSPG-------DGVTTEELLRNADAAMYRAKRSGRNTFMHYS 379 >gi|189913164|ref|YP_001965052.1| GGDEF domain receiver component of a two- component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913501|ref|YP_001964729.1| Putative GGDEF/response regulator receiver domain protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777840|gb|ABZ96139.1| GGDEF domain receiver component of a two- component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781569|gb|ABZ99865.1| Putative GGDEF/response regulator receiver domain protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 298 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 9/170 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 ++++ + + D ++GL N + ++ LS+ DID FK IND +GH Sbjct: 129 HDQLRETAIRDVMTGLYNRRYMEERIEQEFQRCKRHDSLLSMAMIDIDKFKNINDTYGHE 188 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +GD+VI L+ +L F + R GGEEF + +A + + +R+ + ++ Sbjct: 189 IGDQVIKQLAHELKTSFRKSDIISRFGGEEFVILFPETGVVDATRILDRVRENVSKLEMK 248 Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 + H T S G+A + + ++ AD+ LY AK SGRN+++ Sbjct: 249 SDTDQIFHFTFSGGVAGGDLSDIQSNQELLKIADKNLYEAKSSGRNQIIS 298 >gi|330891059|gb|EGH23720.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 463 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 17/178 (9%) Query: 89 ILKELFISYNRI-------SQLSRIDCLSGLLN----HSAFISSLGSYNEKLSIVFFDID 137 +++ L SYN + L+R D LSGLLN H ++ L + + ++ D+D Sbjct: 12 LMQRLQDSYNDLLKSQALSDSLARHDPLSGLLNRRVFHEQLVARLEQPSSQTAVFLIDLD 71 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLV-VVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAIL 195 FK IND+ GH VGD I +++ L G V RLGG+EF A G Q E A L Sbjct: 72 KFKLINDSHGHAVGDAAICAVAESLREATAGWQASVARLGGDEFGLAVSGDFTQVELATL 131 Query: 196 ANDLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR 252 A + I S ++ P + ++ + GIA ++ AD A+Y K GR Sbjct: 132 AESVLAKIAASSADL---PRLALSATLGIAISPLDGSDADILLQHADSAMYRGKNGGR 186 >gi|294142449|ref|YP_003558427.1| GGDEF domain-containing protein [Shewanella violacea DSS12] gi|293328918|dbj|BAJ03649.1| GGDEF domain protein [Shewanella violacea DSS12] Length = 387 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%) Query: 107 DCLSGLLNHSAFISSL------GSYNEKLSIVF-FDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N A +L N+K++++ D+D FK IND GH GD V+ + Sbjct: 207 DGLTHLRNRRAGSRALIELFDRAEANDKIAVLMNIDLDNFKIINDTNGHEAGDMVLIEIG 266 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSE--QEAAI-----LANDLRKIIENSQINISS 212 +++ VF R GG+EF S +E ++ LA++LR ++ N + +SS Sbjct: 267 RRMMAVFRNDDLCIRWGGDEFVVGCYFDSSRFEERSLPAIEKLASELRCVL-NQDVKLSS 325 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 G I I S GIA H + + +++ AD A+YV+K+ GRN+ F Sbjct: 326 GEDIKIGASIGIAMYPQHGDNLQSVLKAADNAMYVSKQKGRNQYSIFD 373 >gi|160941915|ref|ZP_02089242.1| hypothetical protein CLOBOL_06811 [Clostridium bolteae ATCC BAA-613] gi|158435412|gb|EDP13179.1| hypothetical protein CLOBOL_06811 [Clostridium bolteae ATCC BAA-613] Length = 838 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 6/170 (3%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQINDNFGHPVG 151 Y + + +R D L+GLLN F +L EK L++V F++D FK N +G+ G Sbjct: 440 YEKAYEEARTDELTGLLNRKYFCQTLEENYEKCRRTSLALVIFNVDDFKLYNQLYGNHEG 499 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DK + ++ + G + GR G+EFA A LA ++ + I+N ++ + Sbjct: 500 DKALVHIARIIQGTVGDNGYCGRYSGKEFAVILPDYDIYSAQNLAENISRQIQNMNLDCT 559 Query: 212 SGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +T+S GI A ++ +I AD A+Y K+SG+N + +SD Sbjct: 560 DTYLKPLTVSCGICAAPYAAASMNELISNADCAVYHVKRSGKNGIRVYSD 609 >gi|170725163|ref|YP_001759189.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] gi|169810510|gb|ACA85094.1| diguanylate cyclase [Shewanella woodyi ATCC 51908] Length = 538 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 82/182 (45%), Gaps = 33/182 (18%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS-----YNEKLSI--VFFDIDYFKQINDNFGHPV 150 ++ LS+ D L+ + N F SL + EK SI + DID+FK ND +GH Sbjct: 354 QKLEALSQTDSLTKISNRRCFDESLQACWQHAIREKSSIGLIMIDIDHFKLYNDTYGHLA 413 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII---ENS 206 GD+ + ++ L V R GGEEF +L R I + Sbjct: 414 GDQCLREVASALNQTLNRKTDLVARYGGEEF------------VVLLPHTRDCISPAKRC 461 Query: 207 QINI--------SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256 QINI SS S ++T+S G+ C + + AD+ALY AKKSGRNRV Sbjct: 462 QINIEQLALPHESSPTSEYVTVSVGVTSICPDKCSDMQAFTAEADRALYQAKKSGRNRVQ 521 Query: 257 CF 258 F Sbjct: 522 VF 523 >gi|327396683|dbj|BAK14104.1| diguanylate cyclase/phosphodiesterase [Pantoea ananatis AJ13355] Length = 552 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 13/170 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 R + L+ D L+GLLN + L + +E +++ DID FK +ND GH GD ++ Sbjct: 269 RANHLALHDPLTGLLNRRGLMPELETLLDGDEPFAVMVSDIDRFKSVNDVLGHAAGDTLL 328 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN----SQINI 210 +S +L+ V + R GG+EF A G SS ++A+ A+ L +++ + Sbjct: 329 IEVSARLLSVLRPGDILARTGGDEFVAVLPGISSAEDASETASRLTMVLKEPFMLKGRKV 388 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +SG S + + G A +++ AD ALY AK +GR V F+D Sbjct: 389 TSGCSFGVCLFPGYARDAE-----SMLSAADIALYAAKSAGRKGWVIFTD 433 >gi|327396635|dbj|BAK14056.1| phytochrome-like protein Cph2 [Pantoea ananatis AJ13355] Length = 480 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 21/179 (11%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF----ISSL---GSYNEKLSIVFFDIDYFKQIND 144 EL + + + L+ D L+GL N F I SL S +S++ FDIDYFK+ ND Sbjct: 302 ELTEANHSLENLANGDGLTGLANRRYFDHFLIKSLLHGRSSGGPVSLILFDIDYFKRYND 361 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM--FVGRLGGEEFAAAALGSSEQEAAILAND---- 198 +GH GD + + +L+ F R GGEEFA + +A +A+ Sbjct: 362 TYGHVAGDACLQQVG-RLLKTFAQRRIDIAARYGGEEFAIVLADTCAADALKIASSVVEA 420 Query: 199 LRKI-IENSQINISSGPSIHITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRN 253 +RK+ I +S + +G +T+SAG+A E +I RAD+ALY AK GRN Sbjct: 421 VRKLAIPHSSTGLETGC---VTLSAGVATTVAGEGPERAERLIKRADEALYRAKHEGRN 476 >gi|289624438|ref|ZP_06457392.1| GGDEF [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646357|ref|ZP_06477700.1| GGDEF [Pseudomonas syringae pv. aesculi str. 2250] gi|298485584|ref|ZP_07003665.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159900|gb|EFI00940.1| GGDEF domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330870120|gb|EGH04829.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 397 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 21/210 (10%) Query: 68 NLSLVIISITISLLLGYI--SGSILKELFISYNRISQL-----SRIDCLSGLLNH----- 115 N L + ++ + L+ Y S + LF R+ Q+ +R D L+ L N Sbjct: 191 NAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLTRLFNRRYQDE 250 Query: 116 --SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 ++ S ++I+ DID+FK NDN+GHP GD + L ++ V Sbjct: 251 VMTSVWESARKTPADVAIILLDIDHFKSYNDNYGHPQGDTCLKLLCQKIQQSAHENGAVA 310 Query: 174 -RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP 232 R GGEE G + Q + + + G S +T+S G+A C P Sbjct: 311 FRFGGEEVLVLMNGDAGQAREMADALQAAVAALKLPHPVLGESAFVTVSLGVA--CATAP 368 Query: 233 IST---IIYRADQALYVAKKSGRNRVVCFS 259 +T +I AD ALY AK++GRN VCF+ Sbjct: 369 QTTADHLISAADNALYAAKRAGRN-CVCFA 397 >gi|284050567|ref|ZP_06380777.1| response regulator receiver modulated diguanylate cyclase [Arthrospira platensis str. Paraca] Length = 336 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 89/172 (51%), Gaps = 15/172 (8%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGD 152 + L +D L+ + N F L E+ +S++ DIDYFK ND +GH GD Sbjct: 162 LEMLVNLDQLTQISNRRRFDDFLQVEWERHYRVRLPISLIMLDIDYFKYYNDYYGHQAGD 221 Query: 153 ---KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI- 208 K +A + +Q V + V R GGEEFA + + A +A +R I++ Q+ Sbjct: 222 DCLKNVAQIINQ--NVDQSNALVARYGGEEFAVVLPETDLETAEAIAEKIRLAIQDKQLP 279 Query: 209 NISSGPSIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 +I S S +++IS G++ + + I T+I AD ALY AK+ GRNRV F Sbjct: 280 HIQSKVSPYVSISLGVSSQIPTYLTSIKTLIAAADAALYEAKQLGRNRVFSF 331 >gi|229181597|ref|ZP_04308922.1| Sensory box protein [Bacillus cereus 172560W] gi|228601793|gb|EEK59289.1| Sensory box protein [Bacillus cereus 172560W] Length = 735 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 355 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 356 LGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 415 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 416 KPFFI-QGEELSITPSIGIAMYPDYGTNVNELMKNADMAMYRAKANGKNRFVFFS 469 >gi|300767519|ref|ZP_07077430.1| diguanylate cyclase/phosphodiesterase domain 1 containing protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181668|ref|YP_003925796.1| diguanylate cyclase/phosphodiesterase domain 1 containing protein [Lactobacillus plantarum subsp. plantarum ST-III] gi|300494898|gb|EFK30055.1| diguanylate cyclase/phosphodiesterase domain 1 containing protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047159|gb|ADN99702.1| diguanylate cyclase/phosphodiesterase domain 1 containing protein [Lactobacillus plantarum subsp. plantarum ST-III] Length = 378 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 12/162 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ + N +A+ ++S +L+++ FDID+FKQ+ND +GH GDK++ ++ Sbjct: 217 DALTKIENFAAYKTAINYQVTSSRKNGSQLTMLMFDIDHFKQVNDTYGHLAGDKILQHVA 276 Query: 160 DQLVVVF--GTPMF-VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +VF P + R GGEEF EA +A L I + + ++ I Sbjct: 277 QVATIVFHANNPQISLYRTGGEEFNVIFPNYDLTEALAVAEQLFAAINHIAVPVND-HQI 335 Query: 217 HITISAGIAERCHKEPISTIIY-RADQALYVAKKSGRNRVVC 257 ++IS G++E + T Y R D LY +KK GR ++ Sbjct: 336 QLSISIGLSELAADDQSPTAFYQRVDANLYHSKKHGRMQITA 377 >gi|197337468|ref|YP_002158678.1| two component response regulator [Vibrio fischeri MJ11] gi|197314720|gb|ACH64169.1| two component response regulator [Vibrio fischeri MJ11] Length = 299 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 13/166 (7%) Query: 106 IDCLSGLLNHSAF---ISSLGSYNEKLS----IVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ LLN F + + + +++L ++ FDID+FK NDN+GH GD+V+ + Sbjct: 135 LDGLTNLLNRRMFDFDLENRWAESQRLQANFGLIMFDIDHFKLYNDNYGHSAGDEVLVRV 194 Query: 159 SDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI--NISSGPS 215 + L+ V R GGEEF + ++ A LR+ I + I + SS Sbjct: 195 AKALMKTLQRKTDRVYRYGGEEFILIQFDTDFEQLRQTAELLRQCIYDLNITHDFSSHKR 254 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + I++ A + +PI ++ DQ LY AKK GRN C S I Sbjct: 255 VSISVGATLINAEQIQPIPYLLEITDQQLYKAKKQGRN---CVSTI 297 >gi|193782686|ref|NP_436089.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021] gi|193073142|gb|AAK65501.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021] Length = 1071 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 9/169 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH----SAFISSLGSYNE-KLSIVFFDIDYFKQINDN 145 ++ ++ +++ ++R D L+GL N F +L N +++++ D+D FK +ND Sbjct: 637 EDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNESNHARMAVLCLDLDGFKAVNDT 696 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-AAALGSSEQEAAILANDLRKIIE 204 GHP GD ++ +S +L+ T V RLGG+EFA L S EA LA R I Sbjct: 697 LGHPAGDALLRQVSTRLIQAVRTTETVARLGGDEFAIIQPLTESRDEAFRLAQ--RLIDT 754 Query: 205 NSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGR 252 S+ G + ++ S GIA +I AD ALY AK SGR Sbjct: 755 LSEPFSIEGAAANVGTSIGIAFAPEDGTSADELIKAADIALYSAKSSGR 803 >gi|168186555|ref|ZP_02621190.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium botulinum C str. Eklund] gi|169295410|gb|EDS77543.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium botulinum C str. Eklund] Length = 961 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 92/170 (54%), Gaps = 11/170 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPVG 151 RI L+ D L+GL N +A++ + + +K+ +I+F DID FK +ND GH G Sbjct: 527 RIEYLAYNDSLTGLPNRAAYLRYIYNIIQKVKENKKIGAIIFLDIDNFKNVNDTLGHDYG 586 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKIIENSQINI 210 ++++ +++++ V RLGG+EF GS E++ +LA+ + K+ S I Sbjct: 587 NELLKRVNERISYVLTENEKFYRLGGDEFIIVQCGSYDERDIELLADKILKVFNKSF--I 644 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVVCFS 259 ++ T+S GI+ + ++++ AD A+Y AK G+N+ + ++ Sbjct: 645 VKNERVYTTVSLGISFFPNDSCDHNVLFKNADIAMYSAKNLGKNKYLVYN 694 >gi|53802317|ref|YP_112991.1| CBS/GGDEF/EAL domain-containing protein [Methylococcus capsulatus str. Bath] gi|53756078|gb|AAU90369.1| CBS/GGDEF/EAL domain protein [Methylococcus capsulatus str. Bath] Length = 594 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 16/176 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 Y+ ++ L L+ L + G Y +++++F D+D FK +ND GH GD+++ Sbjct: 168 YDPLTSLPNRLLLNDRLKRACLRGQRGGY--RIALLFIDLDRFKLVNDTLGHAAGDQLLQ 225 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFA---AAALGSSE--QEAAILANDLRK--IIENSQIN 209 ++ + V RLGG+EF G E AA LA L + +I+N +I Sbjct: 226 GVAGRFAACVRKVDTVARLGGDEFTVLLEPVQGPDEALAVAAKLAQSLERPFLIQNHEIT 285 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 S+ SI + + H + ++ +AD A+Y AK+ GRNR F++ N+T Sbjct: 286 TSA--SIGVVLFPE-----HDATVEGLMRKADAAMYCAKREGRNRFALFTEEMNST 334 >gi|109897081|ref|YP_660336.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109699362|gb|ABG39282.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 350 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 13/179 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAF---ISSLGSYNEK----LSIVFFDIDYFKQIND 144 EL + LS+ D L+ + N F +L + + ++++ D D+FK +ND Sbjct: 171 ELQAQRRELETLSQTDALTSIYNRGYFNQYFENLWHHATRHKIEIALLIIDADHFKSVND 230 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD + L+ + + R GGEEFA G + Q++ +A+ + + I Sbjct: 231 TYGHLGGDACLIHLAHAINKPINRATDIAVRYGGEEFAILLSGCNPQQSKKMADAIMQSI 290 Query: 204 ENSQINISSGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + + I IT+S GIA H++ + +I +AD ALY AK +GRNR V FS Sbjct: 291 QQHKF-VYQDSEIPITVSIGIATLVPSPHQKS-NELIEQADSALYRAKATGRNRAVLFS 347 >gi|332800172|ref|YP_004461671.1| diguanylate cyclase [Tepidanaerobacter sp. Re1] gi|332697907|gb|AEE92364.1| diguanylate cyclase [Tepidanaerobacter sp. Re1] Length = 221 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 28/225 (12%) Query: 48 IFLFYIGLTPFYGLEYILV-----ENLSLVIISITISLLLGYISGSILKELFI-SYNRIS 101 IF +IG+ G+ + + +NL L+ S+TI +++ G K+L+I +Y Sbjct: 13 IFFLWIGIGLSSGIIQLYMHKKCGKNL-LMTASLTIQIIMWLGLGYSFKKLYIFAYQ--- 68 Query: 102 QLSRIDCLSGLLNHSAFISSLG------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 D L+ L N + L N+ LS+ DID FK+IND FGH GDKV+ Sbjct: 69 -----DELTNLWNRRYLYTRLKDEMKRLKQNKVLSLAIIDIDNFKRINDTFGHLFGDKVL 123 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 ++ L V R GGEEF + + A I+ +RKIIEN Sbjct: 124 IEMACILQKNLRKNDIVARWGGEEFIIVLPKTDVKGAKIVFERIRKIIENYDF------G 177 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 IT+S GIA +I AD+ALY AK+ +N + + + Sbjct: 178 CKITVSGGIAFVGEDIEADKLIGMADEALYEAKRR-KNLIAVYGE 221 >gi|330874514|gb|EGH08663.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 332 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK +ND +GH GD V+ +++ GR+GGEEFAA G + Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVA 247 + A +A L++ I+ ++G + IT S G+ ++ +Y RAD A+Y A Sbjct: 263 PEMAMQIAERLQREIQRQNFQ-ANGSTFSITASQGLTNLGPEDQGLEALYGRADAAMYQA 321 Query: 248 KKSGRNRVV 256 K+ G+N++V Sbjct: 322 KRQGKNQIV 330 >gi|313199910|ref|YP_004038568.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Methylovorus sp. MP688] gi|312439226|gb|ADQ83332.1| diguanylate cyclase with PAS/PAC and GAF sensors [Methylovorus sp. MP688] Length = 453 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 99 RISQLSRIDCLSGLLNHS-------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R+ QL++ D L+ L N A +SS L++++ D+D FKQ+ND+ GH G Sbjct: 284 RLQQLAQYDALTTLPNREYLTHKLEAALSSAEREQRHLALLYLDLDKFKQVNDSLGHDAG 343 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIENS-QIN 209 D ++ ++ +L + V RLGG+EF SS +AA++ LR ++ +I+ Sbjct: 344 DTLLQEVAARLKLSMRETDMVARLGGDEFVVLLQDISSPDQAAMVVEKLRGVLAQPFEID 403 Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 G + I S GIA H + ++ AD+A+Y K RN Sbjct: 404 ---GHRLAIRPSIGIALYPDHGQDRHALLKHADKAMYQEKHGERN 445 >gi|316933558|ref|YP_004108540.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] gi|315601272|gb|ADU43807.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] Length = 656 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 5/165 (3%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGH 148 E+ S + Q++R D L+GL N S F + + + ++ V FD+D FK IND GH Sbjct: 213 EVLSSNRALEQIARADPLTGLANRSHFRDAAAAACRSGQGVAFVLFDVDNFKTINDTRGH 272 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GD+VIA +++ L G RLGG+EF G A+ + Sbjct: 273 DAGDRVIAAVAELLRSSCGPHDLPVRLGGDEFIVVLQGEDVAARALALARRLSGALTRPL 332 Query: 209 NISSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGR 252 ++ P + I+ S GIA + + RAD ALY AK GR Sbjct: 333 RVAGQP-LAISCSIGIAAHSGGPIDVEDVFSRADAALYRAKDDGR 376 >gi|262191056|ref|ZP_06049264.1| GGDEF family protein [Vibrio cholerae CT 5369-93] gi|262033077|gb|EEY51607.1| GGDEF family protein [Vibrio cholerae CT 5369-93] Length = 413 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+ + A L K ++ D+D+FK+ ND +GH GD V+ ++ +L + Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLREIN 300 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---------------- 210 G V R GGEEF+ G +E LR+ IE+ ++ I Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDTNQRPKSHAEGAKK 359 Query: 211 ----SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 S+ ++ ITIS G+ + ++ PI + AD ALY AK++GRN Sbjct: 360 RSRKSNSDNVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406 >gi|161621052|ref|YP_001594938.1| diguanylate cyclase [Brucella canis ATCC 23365] gi|225629456|ref|ZP_03787489.1| GGDEF domain protein [Brucella ceti str. Cudo] gi|254700201|ref|ZP_05162029.1| diguanylate cyclase [Brucella suis bv. 5 str. 513] gi|254703322|ref|ZP_05165150.1| diguanylate cyclase [Brucella suis bv. 3 str. 686] gi|254710767|ref|ZP_05172578.1| diguanylate cyclase [Brucella pinnipedialis B2/94] gi|256029150|ref|ZP_05442764.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1] gi|256058834|ref|ZP_05449050.1| diguanylate cyclase [Brucella neotomae 5K33] gi|260167757|ref|ZP_05754568.1| diguanylate cyclase [Brucella sp. F5/99] gi|260567748|ref|ZP_05838217.1| aminobutyraldehyde dehydrogenase [Brucella suis bv. 4 str. 40] gi|261318337|ref|ZP_05957534.1| diguanylate cyclase [Brucella pinnipedialis B2/94] gi|261322772|ref|ZP_05961969.1| diguanylate cyclase [Brucella neotomae 5K33] gi|261750694|ref|ZP_05994403.1| diguanylate cyclase [Brucella suis bv. 5 str. 513] gi|261753950|ref|ZP_05997659.1| diguanylate cyclase [Brucella suis bv. 3 str. 686] gi|261757193|ref|ZP_06000902.1| aminobutyraldehyde dehydrogenase [Brucella sp. F5/99] gi|265986135|ref|ZP_06098692.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1] gi|294853960|ref|ZP_06794632.1| diguanylate cyclase [Brucella sp. NVSL 07-0026] gi|306846209|ref|ZP_07478771.1| diguanylate cyclase [Brucella sp. BO1] gi|161337863|gb|ABX64167.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365] gi|225615952|gb|EEH13001.1| GGDEF domain protein [Brucella ceti str. Cudo] gi|260154413|gb|EEW89494.1| aminobutyraldehyde dehydrogenase [Brucella suis bv. 4 str. 40] gi|261297560|gb|EEY01057.1| diguanylate cyclase [Brucella pinnipedialis B2/94] gi|261298752|gb|EEY02249.1| diguanylate cyclase [Brucella neotomae 5K33] gi|261737177|gb|EEY25173.1| aminobutyraldehyde dehydrogenase [Brucella sp. F5/99] gi|261740447|gb|EEY28373.1| diguanylate cyclase [Brucella suis bv. 5 str. 513] gi|261743703|gb|EEY31629.1| diguanylate cyclase [Brucella suis bv. 3 str. 686] gi|264658332|gb|EEZ28593.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1] gi|294819615|gb|EFG36615.1| diguanylate cyclase [Brucella sp. NVSL 07-0026] gi|306273460|gb|EFM55321.1| diguanylate cyclase [Brucella sp. BO1] Length = 389 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152 N + + D L+GLLN + L + + ++ DID+FK IND +GHPVGD Sbjct: 210 NELQRERDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVIIADIDHFKAINDAYGHPVGD 269 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211 +V+ + L VGR+GGEEF G++E E L N L ++ + + Sbjct: 270 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 328 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +G +T S GIA E + RAD AL K GRNRV Sbjct: 329 AGQK--VTSSFGIAMVRSGETLWETAARADLALMRVKNLGRNRV 370 >gi|152990661|ref|YP_001356383.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] gi|151422522|dbj|BAF70026.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] Length = 704 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 12/191 (6%) Query: 79 SLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK---LSI 131 SL+ I+ +I++ L + + +S+ D L+ L N H ++ + +K +I Sbjct: 257 SLIAEEINKNIMR-LQSTLKSLDHISKHDSLTQLPNRKCFHEYLDKAMKDFTQKSSQFAI 315 Query: 132 VFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE 191 + D+D FK INDNFGHP GDK++ ++ ++ V + RLGG+EF + Sbjct: 316 MLIDLDNFKLINDNFGHPFGDKLLKIVASRIRNVLKKEDVIARLGGDEF--GVILRRIHN 373 Query: 192 AAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKE-PISTIIYRADQALYVAKK 249 ++ N KII+ Q I +I +IT S GI K+ + AD A+Y AKK Sbjct: 374 PIVVGNIANKIIDILQKPIKIDDTIVYITASLGIYIPTDKKIDAKKALSYADIAMYKAKK 433 Query: 250 SGRNRVVCFSD 260 SG+N F + Sbjct: 434 SGKNSYKFFDE 444 >gi|28871248|ref|NP_793867.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28854498|gb|AAO57562.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 756 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 121/275 (44%), Gaps = 53/275 (19%) Query: 30 YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76 Y +F +F V + L + L L ++ EN L L I +I Sbjct: 178 YSGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 237 Query: 77 TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118 T+ ++ G IS + +L +L + + Q++ D L+ L+N F Sbjct: 238 TLLIIAGSISAAMADKKLQGKENDLQRVNALLTQLDQARVSLQQVAHYDPLTNLINRRGF 297 Query: 119 ----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 L + L+++F DID+FK+IND+ GH GD+++ +++++ Sbjct: 298 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 357 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA----- 225 V R GG+EF +EA LA+ +++ + I+ +G + +T S GIA Sbjct: 358 VARFGGDEFCILLSIPDYEEARHLAH---RVMHKMKEPIALAGRRMVMTTSIGIAVFPRD 414 Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 C + ++ AD ALY +K +GRNRV FS Sbjct: 415 GSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 444 >gi|330505281|ref|YP_004382150.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] gi|328919567|gb|AEB60398.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] Length = 1244 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 21/170 (12%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL------GSYNEKL-SIVFFDIDYFKQINDNFGHPVG 151 R+ + D L+GL N F + L +++L +++F D+D FKQIND+ GHPVG Sbjct: 802 RLDHQAHHDPLTGLPNRLLFENRLRGALDGTRADDQLGAVLFLDLDRFKQINDSLGHPVG 861 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKI------IE 204 D+++ ++++L + V RLGG+EF G + Q+A +A L + ++ Sbjct: 862 DQLLKAIAERLRLQLRDIDTVARLGGDEFIILLPGLHQPQDAEQIAQKLLECFGASFQLD 921 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 N + IS+ I + + G + ++T++ AD A+Y +K GRNR Sbjct: 922 NHEFFISASIGISLYPTDG-------QDVATLVKNADAAMYQSKAKGRNR 964 >gi|325123825|gb|ADY83348.1| diguanylate cyclase response regulator [Acinetobacter calcoaceticus PHEA-2] Length = 566 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 ++ ++ D L+G+ N S ++ + SY +K + ++ DID FKQ+ND +GH VGD Sbjct: 403 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFTQTCLMIIDIDRFKQVNDQYGHIVGD 462 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 +VI +++QL + + R GG+EF +A +LA +R I +I +S Sbjct: 463 RVIVSIAEQLKQNIRSSDLIVRYGGDEFLILLEQVQFVDARLLAEKIRITISLEEICLSG 522 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S +H+++S G A ++ +AD++L AK GRN V Sbjct: 523 SDEKLHVSVSIGFA--IGAANWIDLLEKADRSLLRAKARGRNAV 564 >gi|313898431|ref|ZP_07831968.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2] gi|312956813|gb|EFR38444.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2] Length = 680 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 80/166 (48%), Gaps = 26/166 (15%) Query: 104 SRIDCLSGLLNHSAFISSLGS---YNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVI 155 S D L+G+ N SA + LG N K S ++ DID FKQIND FGH GD VI Sbjct: 521 SSYDYLTGIYNRSALMQ-LGEDMLENAKKSGHSIGVLMMDIDDFKQINDTFGHMQGDAVI 579 Query: 156 AFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + V V M + R GGEEF S+ LA ++R E I Sbjct: 580 -----KQVTVLMKQMQRHGIIARFGGEEFILLIDSLSKHTLYELAEEIRYACEACTIPAD 634 Query: 212 SGPSIHITISAGIAERCHKEPISTIIY----RADQALYVAKKSGRN 253 +G +IH TIS G C++ + + ADQ LY+AK++G+N Sbjct: 635 TG-TIHFTISIGC---CYQNQVHATLKELFNEADQRLYIAKRNGKN 676 >gi|297580350|ref|ZP_06942277.1| GGDEF family protein [Vibrio cholerae RC385] gi|297535996|gb|EFH74830.1| GGDEF family protein [Vibrio cholerae RC385] Length = 413 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+ + A L K ++ D+D+FK+ ND +GH GD V+ ++ +L + Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLREIN 300 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI---------------- 210 G V R GGEEF+ G +E LR+ IE+ ++ I Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKEVLPFIEALRQDIESYELVIRDTNQRPKSHAEGAKK 359 Query: 211 ----SSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 S+ ++ ITIS G+ + ++ PI + AD ALY AK++GRN Sbjct: 360 RSRKSNSDNVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406 >gi|269793186|ref|YP_003318090.1| diguanylate cyclase with PAS/PAC sensor [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100821|gb|ACZ19808.1| diguanylate cyclase with PAS/PAC sensor [Thermanaerovibrio acidaminovorans DSM 6589] Length = 297 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 2/158 (1%) Query: 100 ISQLSRIDCLSGLLNH-SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 + QL+R+ L + + + L ++ ++ FDID FK +ND +GH +GD+V+ + Sbjct: 139 VDQLTRVGNRRFLDDTLESILEDLKAHRWPFGVILFDIDRFKSVNDTYGHQLGDRVLQAV 198 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + L + V R GGEEF ++ A LR ++ + + + +++ Sbjct: 199 ASTLSSSIRSFDAVARYGGEEFVVMLRNVDREKLKRDAERLRLLVSATWVTLGD-REVNV 257 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T+S G ++ +++ RAD +Y +K++GRNR+ Sbjct: 258 TVSGGATMARPEDTPESLLDRADSLMYRSKEAGRNRIT 295 >gi|254470381|ref|ZP_05083785.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062] gi|211960692|gb|EEA95888.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062] Length = 772 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 25/175 (14%) Query: 107 DCLSGLLNHSAF------ISSLGSYNEKLS-IVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L GL N + F + ++++ IVF D+D+FKQIND+ GH +GD+VI ++ Sbjct: 338 DALCGLPNRTWFEVFAADVLKRDRQKQRITGIVFLDLDHFKQINDSLGHSIGDEVIKLVA 397 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--------LANDLRKIIENSQINIS 211 ++L V R+ G+EF ++ E I + +D K+ ++ Sbjct: 398 ERLKASINPEDRVARVSGDEFLLVLSHRTKMEEIIETCMYIEKMLSDAFKVEKH------ 451 Query: 212 SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNT 265 I T S G+A H ++ ++ RAD ALY AKK GR R V F +T Sbjct: 452 ---KILTTASMGVAIAPAHGHDLTELLRRADIALYQAKKLGRGRYVLFEKEMEDT 503 >gi|166712019|ref|ZP_02243226.1| GGDEF family protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 990 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 10/156 (6%) Query: 107 DCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN + +++L + +E+ L++V D+D+FK +ND GH GD V+A + Sbjct: 816 DELTGLLNRAGILAALREMLLHAARSERPLAVVLIDLDHFKLVNDQHGHLAGDAVLAGVG 875 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ + +GR GGEE A G + L R I + ++ +H+T Sbjct: 876 RRMDTLVRGDDRIGRYGGEELLALLPGLNPGATHRLDALHRGICGDYPVDDG---WLHLT 932 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A E ++ RAD ALY AK+ GRNR+ Sbjct: 933 CSIGVAWFQAGETQEQLLARADAALYRAKRGGRNRI 968 >gi|39996758|ref|NP_952709.1| response regulator/GGDEF domain-containing protein [Geobacter sulfurreducens PCA] gi|39983646|gb|AAR35036.1| response regulator/GGDEF domain protein [Geobacter sulfurreducens PCA] gi|298505770|gb|ADI84493.1| response receiver-modulated diguanylate cyclase [Geobacter sulfurreducens KN400] Length = 458 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 16/173 (9%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFG 147 + Y+ + +D L+GL N+ SL + +S++F D+D+FK +ND G Sbjct: 283 LRYSSARDMLYVDELTGLFNYRYLDISLDRELKRADRFGSVVSMIFIDMDHFKGVNDTHG 342 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H G +V+ + L + R GG+EF + + E+ AA +A +R+ IE+ Sbjct: 343 HLFGSQVLHEVGQLLKKSVREVDVIIRYGGDEFTIILVETGEKGAATVAERIRRSIEDHH 402 Query: 208 INISSGPSIHITISAGIAERCHKEPIST-----IIYRADQALYVAKKSGRNRV 255 S G + +T S G A C+ P+ T ++ AD+A+Y K+ G+NRV Sbjct: 403 FLASEGLDVRLTASLGYA--CY--PLDTQSKMELLELADKAMYRGKEEGKNRV 451 >gi|325971589|ref|YP_004247780.1| diguanylate cyclase [Spirochaeta sp. Buddy] gi|324026827|gb|ADY13586.1| diguanylate cyclase [Spirochaeta sp. Buddy] Length = 456 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 8/168 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNHSAFI---SSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 I Y + SR D L+GLLN F+ S S + ++ DID FK+IND +GH G Sbjct: 292 IRYELVKARSRTDSLTGLLNRREFLNLLSQTDSGEQSYAVALIDIDNFKEINDTYGHLNG 351 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DK + L + L + R GG+EF S + L + I ++ + + Sbjct: 352 DKALLSLVETLKHHIRMSDVIARFGGDEFILLFRDCSNID---FCKRLFQAIRHTNVEL- 407 Query: 212 SGPSIHITISAGIAERCHKEP-ISTIIYRADQALYVAKKSGRNRVVCF 258 G + + IS GIA +E +I AD+ LY AK G+ R+ F Sbjct: 408 EGKQVEVVISMGIAFSADEEKSPQALIATADRRLYQAKLGGKGRLCSF 455 >gi|256157342|ref|ZP_05455260.1| diguanylate cyclase [Brucella ceti M490/95/1] gi|256253678|ref|ZP_05459214.1| diguanylate cyclase [Brucella ceti B1/94] gi|261220815|ref|ZP_05935096.1| diguanylate cyclase [Brucella ceti B1/94] gi|265995829|ref|ZP_06108386.1| diguanylate cyclase [Brucella ceti M490/95/1] gi|260919399|gb|EEX86052.1| diguanylate cyclase [Brucella ceti B1/94] gi|262550126|gb|EEZ06287.1| diguanylate cyclase [Brucella ceti M490/95/1] Length = 389 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152 N + + D L+GLLN + L + + ++ DID+FK IND +GHPVGD Sbjct: 210 NELQRERDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVIIADIDHFKAINDAYGHPVGD 269 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211 +V+ + L VGR+GGEEF G++E E L N L ++ + + Sbjct: 270 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 328 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +G +T S GIA E + RAD AL K GRNRV Sbjct: 329 AGQK--VTSSFGIAMVRSGETLWETAARADLALMRVKNLGRNRV 370 >gi|237732955|ref|ZP_04563436.1| diguanylate cyclase [Mollicutes bacterium D7] gi|229383945|gb|EEO34036.1| diguanylate cyclase [Coprobacillus sp. D7] Length = 777 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 15/206 (7%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 Y+ V NL L++ + ++ ++ +I+++ I Y R D L+GLLN AFI + Sbjct: 524 YVFV-NLRLLVNDNAYTGVIENVTNTIVEKNVIEYERDH-----DALTGLLNRRAFIRIM 577 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 S E +++ D+D K INDN+GH +GD I+ ++ V + R+ Sbjct: 578 NSLFENEINKIKIAALLMLDLDNLKYINDNYGHEIGDNYISKAAETFVNSTPENTIISRI 637 Query: 176 GGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPI 233 G+EF G ++ L N L++ I + I ++ + H+ S GIA E Sbjct: 638 SGDEFFVFFYGYDDENVIKQLINKLKEAISKAFIPLADNSNFHVNASGGIAWYPRDSESF 697 Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259 + + AD A+Y K++ + + F+ Sbjct: 698 EKLQHYADYAMYKIKRTSKGNLTEFN 723 >gi|119511357|ref|ZP_01630470.1| PleD-like protein [Nodularia spumigena CCY9414] gi|119463979|gb|EAW44903.1| PleD-like protein [Nodularia spumigena CCY9414] Length = 1613 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 1/129 (0%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 +S+V D+DYFK+ ND +GH VGD V+ + L R GGEE SS Sbjct: 1482 ISVVMIDVDYFKRFNDTYGHDVGDYVLQTIGAMLKETVRGSDIACRYGGEEMTLILPESS 1541 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVA 247 +E I A ++R+ I + + +TIS GIA H +I AD ALY A Sbjct: 1542 LEETTIKAEEIREAIAQLTLAYNGQHLGKLTISLGIAGFPKHGTTGIALIQAADAALYRA 1601 Query: 248 KKSGRNRVV 256 K +GRN+VV Sbjct: 1602 KAAGRNQVV 1610 >gi|119486186|ref|ZP_01620246.1| PleD-like protein [Lyngbya sp. PCC 8106] gi|119456677|gb|EAW37806.1| PleD-like protein [Lyngbya sp. PCC 8106] Length = 698 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 15/173 (8%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ D L+ + N F L + LS++ DIDYFK ND +GH GD Sbjct: 528 LEKLAHTDGLTQIANRRYFDDYLIKEWQRLRREKQYLSLILLDIDYFKFYNDFYGHQSGD 587 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI 210 K + ++ + P V R GGEEF ++++ +A ++++I + ++ Sbjct: 588 KSLISIAQAIKKTLKRPADLVARYGGEEFVVVLPNTNQKGVINIAQQIQQMIRTLAIVHQ 647 Query: 211 SSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S S IT+S GIA C K + +I +AD+ LY AK+ GRNR + S Sbjct: 648 KSQVSNIITLSQGIA--CTIPNSKTSPAQLIAQADKVLYTAKQQGRNRYIVSS 698 >gi|293602985|ref|ZP_06685423.1| sensory box protein [Achromobacter piechaudii ATCC 43553] gi|292818605|gb|EFF77648.1| sensory box protein [Achromobacter piechaudii ATCC 43553] Length = 694 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 22/172 (12%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHP 149 ++ ++ ++ D L+G+ N F L + + + +++ D+D FK +ND GHP Sbjct: 268 AHAQVRYMAHHDTLTGMPNRRLFREQLLRALNHCADDRRTAVLCLDLDNFKSVNDTLGHP 327 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN---- 205 GD+++ + +L V + RLGG+EFA +Q +D+RK+ E Sbjct: 328 CGDELLRLFARRLPKVLREQDTLARLGGDEFAVVLPNIGQQ------DDVRKMAERIIDA 381 Query: 206 -SQINISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRN 253 Q G ++ +++S GIA + P T ++ AD ALY AK++GRN Sbjct: 382 VRQPFEVEGHTVPMSVSIGIA--LAETPDHTADHLLRYADMALYEAKRNGRN 431 >gi|172037524|ref|YP_001804025.1| hypothetical protein cce_2611 [Cyanothece sp. ATCC 51142] gi|171698978|gb|ACB51959.1| hypothetical protein cce_2611 [Cyanothece sp. ATCC 51142] Length = 685 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 10/165 (6%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIA 156 Y+RI+Q+ + + LS++ D+D+FK ND FGHP GD+ + Sbjct: 235 YDRITQIPNRHYFEHYFAQE--WRRMAREKQPLSLIVCDVDFFKAYNDTFGHPQGDRCLQ 292 Query: 157 FLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP- 214 ++ L P V R GGEEF A ++ A +A ++ I+ Q+ + S Sbjct: 293 EVAYTLKYTLHRPGDMVARYGGEEFVAILPNTNASGAVHVAQQMQSAIK--QLKVPSATQ 350 Query: 215 --SIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRV 255 S +TIS G+A ++ ++ AD+ALY AK+ GR++V Sbjct: 351 TVSEFVTISLGVASVIPSQEKSPKQLLNEADKALYEAKQKGRDQV 395 >gi|153800631|ref|ZP_01955217.1| GGDEF family protein [Vibrio cholerae MZO-3] gi|124123766|gb|EAY42509.1| GGDEF family protein [Vibrio cholerae MZO-3] Length = 412 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 23/168 (13%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+ + A L K ++ D+D+FK+ ND +GH GD V+ ++ +L + Sbjct: 241 DPLTQIPGRQALDQDLKHIGRKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLREIN 300 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPSIH------ 217 G V R GGEEF+ G +E LR+ IE+ ++ + + P H Sbjct: 301 GKAR-VYRYGGEEFSIIYKGKLAKEVLPFIESLRQDIESYELVIRDTNQRPKSHAEGAKK 359 Query: 218 -----------ITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRN 253 ITIS G+ + ++ PI + AD ALY AK++GRN Sbjct: 360 RSRKSNSDIVTITISIGVCDSELYRHPIEA-LKAADGALYKAKQAGRN 406 >gi|325971294|ref|YP_004247485.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Spirochaeta sp. Buddy] gi|324026532|gb|ADY13291.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Spirochaeta sp. Buddy] Length = 1480 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 96/216 (44%), Gaps = 30/216 (13%) Query: 57 PFY---GLEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLL 113 PFY G ++ NLS IS + S +GYI+ + I + + S+ D L+GL Sbjct: 346 PFYREKGYPWVRF-NLS---ISTSTSQTIGYIAIQDIDADKIRQQLLIERSQRDSLTGLF 401 Query: 114 NH---SAFISSLGSYNEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 N I + E L + DID FKQIND +GH GD V+ ++++L F Sbjct: 402 NRISLEEMIQDILKNQESLGGFYLIDIDSFKQINDTYGHERGDWVLKQIAEELQAHFPGE 461 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI--TISAGIAER 227 +GRLGG+EF A Q A + P++ I T S G+ Sbjct: 462 TIIGRLGGDEFVAYVPDCQTQSLAFSLG----------ASFCKKPTLEIPCTCSVGL--- 508 Query: 228 CHKE----PISTIIYRADQALYVAKKSGRNRVVCFS 259 C KE + AD ALY AK+ G+N+ V + Sbjct: 509 CMKEGEFLSFEQLYQNADLALYRAKELGKNQCVLYD 544 >gi|238064412|ref|ZP_04609121.1| diguanylate cyclase [Micromonospora sp. ATCC 39149] gi|237886223|gb|EEP75051.1| diguanylate cyclase [Micromonospora sp. ATCC 39149] Length = 216 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 8/154 (5%) Query: 107 DCLSGLLNHSAF---ISSL--GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL N AF ++L + + L + D+D FKQ+ND +GH GD+V+ ++++ Sbjct: 51 DPLTGLPNRRAFFRLAATLLTDTVGQPLIAIVLDLDDFKQVNDRYGHAAGDQVLISVAER 110 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITI 220 L F V RLGG+EF A L + + L + R++ E+ I G S+ +T Sbjct: 111 L-AAFAGDNLVARLGGDEF-AGLLTTPTVDRRWLEHASRRLCESLAAPIPLRGLSLRVTA 168 Query: 221 SAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 S G+A ++ + RAD A+Y AK G +R Sbjct: 169 SVGLAPVTCPTQLTEALDRADAAMYRAKSVGGSR 202 >gi|145298106|ref|YP_001140947.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850878|gb|ABO89199.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 320 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 22/177 (12%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNE---------KLSIVFFDIDYFKQINDNFGHPV 150 ++ LS+ D L+GL N F S L +NE +S + D+D FK ND+FGH V Sbjct: 145 VTHLSQHDPLTGLANRRLFNSFL--HNEWRRSMRERTPISFIMLDLDNFKACNDHFGHQV 202 Query: 151 GDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQI 208 GD+++ + L P RLGG+EF A LG++ +EAA+ + +R I+ ++ Sbjct: 203 GDELLRQVGHLLSAFCQRPADLPSRLGGDEF-AVVLGNTGKEAALGMGEAIRLGIK--EL 259 Query: 209 NISSGPSIHITISAGIAERCHKEPI---STIIYRADQALYVAKKSGRNR---VVCFS 259 +++ ++ S GIA + + + ++ AD ALY AKK G+NR V C S Sbjct: 260 SMNELGDARLSASIGIATQLPERVLVSEDELLAAADMALYTAKKEGKNRCHSVACPS 316 >gi|89073162|ref|ZP_01159701.1| putative transcriptional regulator [Photobacterium sp. SKA34] gi|89051115|gb|EAR56572.1| putative transcriptional regulator [Photobacterium sp. SKA34] Length = 404 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 9/161 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISS--LGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +++ +++ D L+GL N F + + +E L+I DID+FK++ND +GH GD V+ Sbjct: 249 DKLYRMANQDALTGLWNRRYFFTHRCCQTEDESLNIAMIDIDFFKKVNDTYGHDGGDAVL 308 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS 215 +S +++ V R GGEEF G + L +R+ IE+ I P Sbjct: 309 ISIS-KIIDAHFPESIVARFGGEEFCIQHSGHFHSFLSTLEL-IRQRIESITI-----PY 361 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + IS I E + I +AD LY AKK+GRN++V Sbjct: 362 LDQKISISIGATTGLESLENSIKQADDNLYTAKKNGRNKLV 402 >gi|148265482|ref|YP_001232188.1| diguanylate cyclase with PAS/PAC sensor [Geobacter uraniireducens Rf4] gi|146398982|gb|ABQ27615.1| diguanylate cyclase with PAS/PAC sensor [Geobacter uraniireducens Rf4] Length = 503 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 13/178 (7%) Query: 85 ISGS--ILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE----KLSIVFFDIDY 138 ISGS + E + ++ LS D L+GL N + F + LG +S+V D+D Sbjct: 329 ISGSNRDITERKQAEEQLRYLSTHDNLTGLYNRAYFDAELGRLAGGREFPISVVMADVDG 388 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND 198 K++ND GH VGD+++ + L+ F + V R+GG+EFA G+ + + D Sbjct: 389 LKEVNDRHGHAVGDRLLQEAAKVLLAAFRSDDVVARIGGDEFAVLLPGAD----SAMVKD 444 Query: 199 LRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAK--KSGRN 253 + K +E+ Q ++ S+ +++S G A E + ++ AD+ +Y K + GR Sbjct: 445 ILKRVESCQAGVNRANSVFRLSLSLGTATAETGESLGEVLKLADERMYREKFGRKGRG 502 >gi|114565894|ref|YP_753048.1| diguanylate cyclase/phosphodiesterase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336829|gb|ABI67677.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 319 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 23/199 (11%) Query: 76 ITISLLLGYIS-----GSILKELFISYNRISQLSRI-------DCLSGLLNHSAF----- 118 + IS L G+ S ++KE+ Y ++ +I D L+GL N F Sbjct: 114 LQISDLTGHYSRVKQLKHMIKEIDSEYEQVRAAEKINRFKAFHDALTGLPNRYLFYDRLD 173 Query: 119 --ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLG 176 IS E L++VF D+D FK++NDN+GH GD ++ ++++L + + RLG Sbjct: 174 NAISMAQRNKEMLAVVFLDLDGFKEVNDNYGHEAGDHLLQVVAERLRELLRESDTLARLG 233 Query: 177 GEEFA-AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS- 234 G+EF SE +AA +A + + N + G +++T S GI+ S Sbjct: 234 GDEFLFIFPQIKSEADAATIAKKILTALANP--FMFWGREVYLTASIGISLYPKDAKNSR 291 Query: 235 TIIYRADQALYVAKKSGRN 253 +I +AD A+Y K SG+N Sbjct: 292 NLINKADLAMYQVKNSGKN 310 >gi|306841736|ref|ZP_07474422.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] gi|306288141|gb|EFM59528.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] Length = 190 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 10/121 (8%) Query: 72 VIISITISLLLGYISGSILKELFISY-------NRISQLSRIDCLSGLLNHSAFISSLGS 124 +++ I++ LG S L+EL SY N +++++ +D L+GLLN +FI + Sbjct: 1 MLLPFLIAMPLGVFWFSRLEELERSYRTAVKRANELARVASVDPLTGLLNRRSFIQQFNA 60 Query: 125 YNEKLSIVFF---DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 N+ +F D+DY KQIND +GHP GD I ++ L + + R+GG+EF Sbjct: 61 ANKAGVRGWFLIVDVDYLKQINDQYGHPAGDDAIIAVAQALEDCLSSDSLIARIGGDEFC 120 Query: 182 A 182 A Sbjct: 121 A 121 >gi|213971401|ref|ZP_03399515.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] gi|213923844|gb|EEB57425.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] Length = 756 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 121/275 (44%), Gaps = 53/275 (19%) Query: 30 YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76 Y +F +F V + L + L L ++ EN L L I +I Sbjct: 178 YSGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 237 Query: 77 TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118 T+ ++ G IS + +L +L + + Q++ D L+ L+N F Sbjct: 238 TLLIIAGSISAAMADKKLQGKENDLQRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGF 297 Query: 119 ----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 L + L+++F DID+FK+IND+ GH GD+++ +++++ Sbjct: 298 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 357 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA----- 225 V R GG+EF +EA LA+ +++ + I+ +G + +T S GIA Sbjct: 358 VARFGGDEFCILLSIPDYEEARHLAH---RVMHKMKEPIALAGRRMVMTTSIGIAVFPRD 414 Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 C + ++ AD ALY +K +GRNRV FS Sbjct: 415 GSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 444 >gi|145300080|ref|YP_001142921.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142852852|gb|ABO91173.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 539 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 24/184 (13%) Query: 89 ILKELFISYNRISQLSR----IDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDID 137 ++KE Y + + + +D L+ + N +A L YN L + DID Sbjct: 360 LMKEETAEYKKRLTIQKHKLFLDSLTQVHNRAALDERLELEYKRWLRYNTPLCLAIIDID 419 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN 197 +FK INDN+GH GDK + ++ L F+ R GGEEF I + Sbjct: 420 HFKNINDNYGHMAGDKALKVVAKALQGALRDTDFIARFGGEEFVVLL-------PNINPD 472 Query: 198 DLRKIIENSQINISSGP------SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 +K +E + I S P + ITIS G + + RAD+ALY +K SG Sbjct: 473 KYQKPLETLRQTIKSIPFRFRDARVEITISIGATLFREGDHTTDAFERADKALYSSKHSG 532 Query: 252 RNRV 255 R++V Sbjct: 533 RDQV 536 >gi|119486067|ref|ZP_01620129.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] gi|119456842|gb|EAW37970.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] Length = 346 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 25/209 (11%) Query: 67 ENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS------ 120 +NL L ++ + L G EL + + +L+ D L+ L N F Sbjct: 140 QNLKLQQMNQELQRLAG--------ELQQANRELQRLAVTDSLTQLANRRQFDEYLIHEW 191 Query: 121 -SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGE 178 + + LS++ D+D+FK ND +GHP GD + ++ + P R GGE Sbjct: 192 LRMLREQQFLSVILCDVDFFKNYNDKYGHPAGDNCLRKVAKAICQQVQRPGDLAARYGGE 251 Query: 179 EFAAAALGSSEQEAAI-LANDLRKIIENSQINISSGP-SIHITISAGIA---ERCHKEPI 233 EF L +++ E AI +A +R+ I++ I S + IT+S+G+A + + P Sbjct: 252 EF-VIILPNTQAEGAINVAEGIRQAIKSLNIPHSQSKIADCITVSSGVASVVPQANDSP- 309 Query: 234 STIIYRADQALYVAKKSGRNRVV--CFSD 260 S +I AD ALY AKK GR+ V+ FSD Sbjct: 310 SNLIATADTALYEAKKKGRDCVIYKPFSD 338 >gi|327193499|gb|EGE60393.1| two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 932 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 21/184 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 + EL S +I Q++ D L+GL N + F I S ++ ++ D+D+FK I Sbjct: 462 ITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQRAGVMLIDMDHFKAI 521 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDL- 199 ND GHPVGD+++ ++ ++ V RLGG+EFA + ++ A I + L Sbjct: 522 NDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPNVQDNDDLAQIASRMLA 581 Query: 200 ----RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R ++ + +I +S I + + G A P + Y AD A+Y+AK+SGR+ Sbjct: 582 AFGERFMLSDREIFVSCSIGISVFPNDGDA------PDDLVKY-ADSAMYLAKRSGRSNF 634 Query: 256 VCFS 259 +S Sbjct: 635 RFYS 638 >gi|325284705|ref|YP_004264168.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus MRP] gi|324316194|gb|ADY27308.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus MRP] Length = 819 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 9/174 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE---KLSIVFFDIDYFKQINDNFG 147 K+L + + ++ + D L+GL N + F + + E ++F D+D FKQ+ND G Sbjct: 373 KQLQTAQHTLAYRATHDALTGLANRAYFQAEVERELEAGHSFGLLFIDLDRFKQVNDTLG 432 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILAND-LRKIIEN 205 H GD+++ ++ QL V V R+GG+EF + +A ++A+ L ++ E Sbjct: 433 HDTGDQLLKAVARQLKQVLRPNDLVARMGGDEFTVILRNLHTSYDAEVMAHKVLNRLAEP 492 Query: 206 SQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCF 258 + + ++++T S G+A E +ST+ AD A+Y AK+ G+N V F Sbjct: 493 FHV---AENTLYVTASIGMAVAPQDGEDVSTLQRHADIAMYRAKREGKNSVRAF 543 >gi|317406652|gb|EFV86824.1| hypothetical protein HMPREF0005_04995 [Achromobacter xylosoxidans C54] Length = 589 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 16/165 (9%) Query: 107 DCLSGLLNH-------SAFIS----SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 D L+GL N SA I+ +L + L+++F D+D FK++ND FGH GD ++ Sbjct: 163 DYLTGLPNRRQCMETLSAAIAEAEPALAARGATLAVLFLDLDRFKEVNDAFGHAEGDLLL 222 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSGP 214 ++D+L +F R+GG+EF ++E+ A LAN L + S ++ G Sbjct: 223 CDVADRLRKFLTPSIFCARVGGDEFLLVLRDTNERAAEALANSILNSLSRPSDVH---GR 279 Query: 215 SIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S+ + S GIA E T++ AD A+Y AK +GR +V + Sbjct: 280 SLSLGASIGIALLNSPGESAETLLNYADAAMYAAKSAGRFQVRAY 324 >gi|315126116|ref|YP_004068119.1| hypothetical protein PSM_A1022 [Pseudoalteromonas sp. SM9913] gi|315014629|gb|ADT67967.1| hypothetical protein PSM_A1022 [Pseudoalteromonas sp. SM9913] Length = 1000 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 21/172 (12%) Query: 96 SYNRISQLSRIDCLSGLLNHSAF---------ISSLGSYNEKLSIVFFDIDYFKQINDNF 146 S ++ QL+ D L+GL N + F ++ G Y+ ++ +FD+D FK+IND Sbjct: 561 SQRKMEQLAYFDTLTGLANRTFFRMQLRKSMALAERGRYS--FALFYFDLDEFKRINDTL 618 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN 205 GH GD+++ ++ +L + RLGG+EFA G ++EA+ +A+ ++K + N Sbjct: 619 GHDAGDQLLVEVATRLKQRLRAEDTIARLGGDEFAVLLSGIEHQKEASEVADTIQKTL-N 677 Query: 206 SQINISSGPSIHITISAGIA----ERCHKEPISTIIYRADQALYVAKKSGRN 253 I + S I ++ S GI + ++ ++ AD A+Y AK GRN Sbjct: 678 QPIKLGSNEVI-VSASIGITLAPFDSLEED---QLLKHADLAMYEAKAKGRN 725 >gi|307720854|ref|YP_003891994.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM 16294] gi|306978947|gb|ADN08982.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM 16294] Length = 661 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 28/189 (14%) Query: 93 LFISYNRISQ-------LSRIDCLSGLLNHSAFISSL------GSYNE-KLSIVFFDIDY 138 L +++ R+ Q LS D LSGL N + + L G ++ + +++F D+D Sbjct: 221 LSMTFKRLKQEQEELYNLSTKDPLSGLYNRLSLVEKLNWLISKGKRDKNEFAMIFLDLDN 280 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LAN 197 FK IND+ GH GDK++ ++SD L+ V RLGG+EF ++ + +A Sbjct: 281 FKNINDSKGHEFGDKILKYISDILLNATRNNDIVSRLGGDEFVVVLPDYKDENKIVEIAQ 340 Query: 198 DLRK------IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 L++ I+N I++ I I G + + T++ AD A+Y +K+ G Sbjct: 341 RLKEKLSTPFKIDNEDYQITASMGIAIYPKDG-------DNVQTLLKNADIAMYKSKELG 393 Query: 252 RNRVVCFSD 260 +N F+D Sbjct: 394 KNNFQFFTD 402 >gi|299537002|ref|ZP_07050307.1| putative signaling membrane protein [Lysinibacillus fusiformis ZC1] gi|298727582|gb|EFI68152.1| putative signaling membrane protein [Lysinibacillus fusiformis ZC1] Length = 338 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 18/165 (10%) Query: 98 NRISQLSRIDCLSGLLN--------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 N +++ +D L+G+LN H I + +I+ D+D FK IND +GH Sbjct: 169 NDLTEQLNLDSLTGILNRRRMDQILHKLIIDKVPH-----AIILIDLDDFKSINDTYGHT 223 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD+V+ + + G F R GGEEF + ++A LA LR I+ + Sbjct: 224 VGDEVLKAFAITMQSSVGEQGFCFRFGGEEFMVILPSMNIEDAVQLAESLR--IKQALQE 281 Query: 210 ISSGPSIHITISAGI-AERCHKEPISTIIYRADQALYVAKKSGRN 253 G S +T+SAGI A + + + +I AD ALY AK+SGRN Sbjct: 282 TVCGRS--VTMSAGITAFTPNVQSPNQLIEIADHALYKAKQSGRN 324 >gi|297539378|ref|YP_003675147.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera sp. 301] gi|297258725|gb|ADI30570.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera sp. 301] Length = 953 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 14/176 (7%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQI 142 + E I N + Q + D L+ L N + L N +++ F D+D+FK I Sbjct: 774 ITERKIRDNEVHQHAYFDTLTKLPNRRMLMDRLSQELSQAERDNRIVALFFLDLDHFKHI 833 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLR 200 ND+ GH VGD ++ + +L+ V RLGG+EF + + + + LR Sbjct: 834 NDSLGHDVGDLILKEAALRLLSCVRPNDMVSRLGGDEFVILLSEISDANYAKKVAEKVLR 893 Query: 201 KIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254 K E +N G + I+ S GIA R I+ ++ AD A+Y +K +GRNR Sbjct: 894 KFEEPIDVN---GKEVIISASIGIALRTGDVKITFKQLMKNADMAMYESKATGRNR 946 >gi|190894121|ref|YP_001984415.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] gi|190699782|gb|ACE93865.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 932 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 21/184 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 + EL S +I Q++ D L+GL N + F I S ++ ++ D+D+FK I Sbjct: 462 ITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQRAGVMLIDMDHFKAI 521 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDL- 199 ND GHPVGD+++ ++ ++ V RLGG+EFA + ++ A I + L Sbjct: 522 NDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPNVQDNDDLAQIASRMLA 581 Query: 200 ----RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R ++ + +I +S I + + G A P + Y AD A+Y+AK+SGR+ Sbjct: 582 AFGERFMLSDREIFVSCSIGISVFPNDGDA------PDDLVKY-ADSAMYLAKRSGRSNF 634 Query: 256 VCFS 259 +S Sbjct: 635 RFYS 638 >gi|89255347|ref|NP_659900.2| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|89213301|gb|AAM54913.2| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 932 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 21/184 (11%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQI 142 + EL S +I Q++ D L+GL N + F I S ++ ++ D+D+FK I Sbjct: 462 ITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQRAGVMLIDMDHFKAI 521 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDL- 199 ND GHPVGD+++ ++ ++ V RLGG+EFA + ++ A I + L Sbjct: 522 NDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPNVQDNDDLAQIASRMLA 581 Query: 200 ----RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 R ++ + +I +S I + + G A P + Y AD A+Y+AK+SGR+ Sbjct: 582 AFGERFMLSDREIFVSCSIGISVFPNDGDA------PDDLVKY-ADSAMYLAKRSGRSNF 634 Query: 256 VCFS 259 +S Sbjct: 635 RFYS 638 >gi|78186913|ref|YP_374956.1| diguanylate cyclase [Chlorobium luteolum DSM 273] gi|78166815|gb|ABB23913.1| diguanylate cyclase (GGDEF domain) [Chlorobium luteolum DSM 273] Length = 424 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 78/164 (47%), Gaps = 9/164 (5%) Query: 107 DCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D +GL N+ F L ++ +S+ DID+FK ND GH GD V+ L+ Sbjct: 251 DEKTGLYNYRHFKEHLIIDVERAKRFHSNVSLAMIDIDHFKLYNDAHGHIAGDHVLEILA 310 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHI 218 + R GGEEFA + + A ++ LRKII + + + PS + Sbjct: 311 GIIKEESRLSDIPSRFGGEEFAILFPKTDAETALDISERLRKIISATPVPHEHQQPSGQL 370 Query: 219 TISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 T+S GIA T+I AD+ALY AK GRN VV FS + Sbjct: 371 TVSIGIATFPDDASDWYTLINNADRALYEAKAQGRNSVVTFSSL 414 >gi|238791925|ref|ZP_04635561.1| Sensory box protein [Yersinia intermedia ATCC 29909] gi|238728556|gb|EEQ20074.1| Sensory box protein [Yersinia intermedia ATCC 29909] Length = 335 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 15/200 (7%) Query: 61 LEYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFIS 120 LE + ++N SL + ++ L + + ++L I LS D L+ N Sbjct: 140 LEKLELKNKSLEALVEERTVELRETNFRLQQQLDIK----KSLSETDVLTSAANRYLLEK 195 Query: 121 SLG-SYN------EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L YN + LS++ D+D FK IND GH VGD + + D + +G Sbjct: 196 VLKHEYNRAKRFCQPLSLLALDLDNFKSINDKHGHSVGDLTLTHIVDVIRNNIREIDVLG 255 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GG+EF + EA +A +R+ IE + +I++T+S G+ E E Sbjct: 256 RWGGDEFMIVLPNTQLNEAKCIAEKIRQCIETMPVE----GNINVTMSLGVVELGQNEAQ 311 Query: 234 STIIYRADQALYVAKKSGRN 253 ++ RAD+ LY +K +GRN Sbjct: 312 EQLLIRADKMLYNSKAAGRN 331 >gi|95930035|ref|ZP_01312775.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans DSM 684] gi|95134004|gb|EAT15663.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans DSM 684] Length = 556 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 14/169 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGS---YNEKLSI----VFFDIDYFKQINDNFGHPV 150 ++I + D L+ L N F LG + ++ I +F D+D FK++ND+ GH Sbjct: 383 DKIWHQAHHDSLTDLPNRVLFYQYLGDVVLHAQRQDIGAALMFVDLDCFKEVNDSLGHDY 442 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ ++ +L V R+GG+EF +S+ +A + + K++ +Q+N Sbjct: 443 GDLLLQQVAKRLKDSVRQTDQVARIGGDEFTVLLCHTSDNQAILSVAE--KVL--NQLNR 498 Query: 211 S---SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +G I+ S GIA C T++ +AD A++ AKK+GRN+V+ Sbjct: 499 PFDLNGHQAQISGSIGIARVCKGHTTETLVRQADHAMFAAKKAGRNQVI 547 >gi|315181657|gb|ADT88570.1| sensory box/GGDEF family protein [Vibrio furnissii NCTC 11218] Length = 613 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGH 148 +++ S D LS + N F S +E+ + DID+FK+IND +GH Sbjct: 444 DQLRDQSEKDGLSNIWNRRKFDQEFRSECMRVKRYPAHEQSCLAILDIDHFKRINDKYGH 503 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDK I ++ L F+ R+GGEEFA + EA + N LR + Sbjct: 504 ARGDKTIRAVAQCLRNELRESDFLARIGGEEFAIILPHTPIDEAETVLNRLRVAV----F 559 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ G +++S G+ + E + RAD ALY +K+SGRN V + E Sbjct: 560 DLHQG---DLSVSGGLTDIT--EVPEEVYQRADMALYESKESGRNVVSVLTSAE 608 >gi|301383588|ref|ZP_07232006.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato Max13] gi|302059985|ref|ZP_07251526.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato K40] gi|302132076|ref|ZP_07258066.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 763 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 121/275 (44%), Gaps = 53/275 (19%) Query: 30 YFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVEN-------------LSLVIISI 76 Y +F +F V + L + L L ++ EN L L I +I Sbjct: 185 YSGMFHQMFRYGVSLLLGAGLLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAI 244 Query: 77 TISLLLGYISGS------------------ILKELFISYNRISQLSRIDCLSGLLNHSAF 118 T+ ++ G IS + +L +L + + Q++ D L+ L+N F Sbjct: 245 TLLIIAGSISAAMADKKLQGKENDLQRVNALLSQLDQARVSLQQVAHYDPLTNLINRRGF 304 Query: 119 ----ISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 L + L+++F DID+FK+IND+ GH GD+++ +++++ Sbjct: 305 NQIFAEKLLEHTHSKGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDV 364 Query: 172 VGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA----- 225 V R GG+EF +EA LA+ +++ + I+ +G + +T S GIA Sbjct: 365 VARFGGDEFCILLSIPDYEEARHLAH---RVMHKMKEPIALAGRRMVMTTSIGIAVFPRD 421 Query: 226 -ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 C + ++ AD ALY +K +GRNRV FS Sbjct: 422 GSTCDE-----LLKHADLALYQSKGNGRNRVNFFS 451 >gi|260769118|ref|ZP_05878051.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972] gi|260614456|gb|EEX39642.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972] Length = 613 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 18/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY---------NEKLSIVFFDIDYFKQINDNFGH 148 +++ S D LS + N F S +E+ + DID+FK+IND +GH Sbjct: 444 DQLRDQSEKDGLSNIWNRRKFDQEFRSECMRVKRYPAHEQSCLAILDIDHFKRINDKYGH 503 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDK I ++ L F+ R+GGEEFA + EA + N LR + Sbjct: 504 ARGDKTIRAVAQCLRNELRESDFLARIGGEEFAIILPHTPIDEAETVLNRLRVAV----F 559 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 ++ G +++S G+ + E + RAD ALY +K+SGRN V + E Sbjct: 560 DLHQG---DLSVSGGLTDIT--EVPEEVYQRADMALYESKESGRNVVSVLTSAE 608 >gi|223039312|ref|ZP_03609601.1| diguanylate cyclase [Campylobacter rectus RM3267] gi|222879373|gb|EEF14465.1| diguanylate cyclase [Campylobacter rectus RM3267] Length = 355 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 7/178 (3%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY----NEKLSIVFFDIDYFKQ 141 S I +++ +++L+ D L+GLLN +AF + + +++S+V DID FK+ Sbjct: 171 SAKIRQDMLERQESLNELANKDPLTGLLNRNAFHVQVSPHINLLEKEVSVVLCDIDDFKK 230 Query: 142 INDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 +ND +GH GD+ + ++ + V R GGEEF G + + + + +R+ Sbjct: 231 LNDTYGHAFGDEALKTVALTIKNSLREGDLVYRWGGEEFLIFLSGINLENSRRIFERIRR 290 Query: 202 IIENSQINISSGPSIHITISAGIAERCHK--EPISTIIYRADQALYVAKKSGRNRVVC 257 I +++ G S + + G+ K + + I +AD LY KKSG+N+VV Sbjct: 291 KIAETELKF-DGKSAKTSATFGLVNFNPKALKDVEAAIKQADILLYNGKKSGKNKVVA 347 >gi|189424951|ref|YP_001952128.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ] gi|189421210|gb|ACD95608.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ] Length = 771 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 21/157 (13%) Query: 107 DCLSGLLNHSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D L+GL N +AF L ++++ L+++ D+D KQ+ND GH GD+++ ++ L Sbjct: 619 DSLTGLYNRAAFEHHLSRFDKEGPFPLAVIMADLDGLKQVNDTQGHEAGDRLLQAAAELL 678 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII-------ENSQINISSGPS 215 + F T V R+GG+EFA G E+ A N L++ I EN Q+ +S G Sbjct: 679 SLSFRTNDIVARIGGDEFALLLPGIPEEMAKNKFNRLQRQIELFTELPENPQVALSCG-M 737 Query: 216 IHITISAGIAERCHKEPISTIIYRADQALYVAKKSGR 252 I +T + E + +ADQ +Y KK+ + Sbjct: 738 IQVTGPGQLLE---------AVKQADQLMYQQKKARK 765 >gi|262403434|ref|ZP_06079992.1| GGDEF family protein [Vibrio sp. RC586] gi|262349938|gb|EEY99073.1| GGDEF family protein [Vibrio sp. RC586] Length = 572 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 13/185 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSA---FISSLGSYNE---KLSIVFFDIDYFKQIND 144 KEL R++Q +R D L+ L N A FI ++ +++ D+D FK +ND Sbjct: 387 KELQSLNQRLAQAARTDSLTQLYNRRAYEEFIQECWQTHQGQLPITLAVMDLDGFKAVND 446 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 GH VGD+V+ S+ L F P + + RLGG+EFA S++E L +II Sbjct: 447 QLGHQVGDEVLRLFSNLLRETFHHPSVRIARLGGDEFAVIM---SDREPPSHLALLAQII 503 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTIIY--RADQALYVAKKSGRNRVVCFSDI 261 ++ + +++S G A ++T + ADQALY AK SG+ ++V + Sbjct: 504 TEFELKTAQRFQ-DLSVSIGAASVVPNAEMNTDSFFSLADQALYQAKASGKKQLVVYPLA 562 Query: 262 ENNTC 266 +N+ Sbjct: 563 QNDPA 567 >gi|238787036|ref|ZP_04630836.1| hypothetical protein yfred0001_5190 [Yersinia frederiksenii ATCC 33641] gi|238724824|gb|EEQ16464.1| hypothetical protein yfred0001_5190 [Yersinia frederiksenii ATCC 33641] Length = 572 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 13/176 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQIND 144 +L + R+ +R D L+ L N F L LS++ DIDYFK ND Sbjct: 389 KLIKANRRLEIQARTDSLTKLPNRREFKKVLAHEFMRAKRSGSPLSVLMIDIDYFKNFND 448 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD + ++ L V R GGEEFAA + ++ A+++A + + I Sbjct: 449 CYGHISGDACLRLVARALRKSLKRSTDIVARYGGEEFAAILPDTDQKGASLVAEHILQSI 508 Query: 204 ENSQINISSGPSIHITISAGIA-ERCHKEPIST----IIYRADQALYVAKKSGRNR 254 I S +TIS G+ + H+ T ++ ADQALY +KK+GRN+ Sbjct: 509 RAMGIKHSDSKFRKVTISLGVTVYQAHQHTTITDQADLMLTADQALYYSKKNGRNQ 564 >gi|163816146|ref|ZP_02207514.1| hypothetical protein COPEUT_02330 [Coprococcus eutactus ATCC 27759] gi|158448566|gb|EDP25561.1| hypothetical protein COPEUT_02330 [Coprococcus eutactus ATCC 27759] Length = 1039 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 7/191 (3%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY---- 125 +VI+ ++ + L ++ + + + R D L+GLLNH+AF S + Sbjct: 844 EIVIVDVSSTYALKMLTDAEQNKADVRLRNWENTYRTDPLTGLLNHAAFRSDMEQRLLEC 903 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 ++ D+D FKQ ND +GH GDK + ++ L R+GG+EFAA Sbjct: 904 THTAVMIMMDVDRFKQYNDTYGHHNGDKYLVLVAQALQAALRGDDHACRMGGDEFAAMLF 963 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEPISTIIYRADQAL 244 + ++ ++I + + + + I++ A IA + + + AD AL Sbjct: 964 FNKSVSDDVIRERAQQIFDKVNLTVKATEGGTGISMGAVIART--ELTFNEMYEEADNAL 1021 Query: 245 YVAKKSGRNRV 255 Y K+SGR R+ Sbjct: 1022 YDVKESGRGRI 1032 >gi|149187184|ref|ZP_01865482.1| putaitive GGDEF domain [Vibrio shilonii AK1] gi|148838720|gb|EDL55659.1| putaitive GGDEF domain [Vibrio shilonii AK1] Length = 456 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 7/156 (4%) Query: 99 RISQLS-RIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 ++++L+ ++D L+GL N + S Y + L+++ D D K INDN+GH VGD+ Sbjct: 302 KLAELAIKLDELTGLYNRAILRDSGIKYAIEKKGLAVIVIDGDKLKLINDNYGHHVGDEA 361 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 I +++ + F ++ R GG+EF G Q A LAN L + I + + Sbjct: 362 IVYIAQCMRQCFRESDYLIRSGGDEFLVLLPGCGLQTAERLANTLSRTIRSKTYGAN--- 418 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 + + IS G+ KE +S+ I RAD LY K++ Sbjct: 419 KLTLDISLGVTVLQEKESLSSAIKRADALLYQVKRN 454 >gi|154249685|ref|YP_001410510.1| diguanylate cyclase with PAS/PAC sensor [Fervidobacterium nodosum Rt17-B1] gi|154153621|gb|ABS60853.1| diguanylate cyclase with PAS/PAC sensor [Fervidobacterium nodosum Rt17-B1] Length = 538 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 13/168 (7%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ + S D L+GL N F I Y K S++ D+D KQIND FGH G Sbjct: 367 KLEEASFKDPLTGLYNRRYFMIMLKNEIRRAKRYGTKSSVMMIDLDGLKQINDTFGHDKG 426 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D I L+ ++ R GG+EFA + +A ++ L++ +E + N Sbjct: 427 DLAIKTLAQAMISSTRVTDVCARFGGDEFAILLPQTPVDKAQVIVYRLKETLE--KFNSE 484 Query: 212 SGPSIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S I SAGI + E I+T + RAD+ LY AK G+N ++ Sbjct: 485 STEKFKIHFSAGITSIIKADDDEGINT-LKRADELLYKAKSLGKNLII 531 >gi|257469179|ref|ZP_05633273.1| putative signaling protein [Fusobacterium ulcerans ATCC 49185] gi|317063427|ref|ZP_07927912.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689103|gb|EFS25938.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 445 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 15/156 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYN----EKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R+ ++S D L+GL N + +IS+L E L I++ D++ K IND +GH GD++ Sbjct: 292 RLEEMSFTDMLTGLGNRNKYISTLEEIEKNLPETLGIIYMDLNGLKIINDTYGHTYGDEM 351 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +++ L+ F +F R+GG+EF +SE++ LRKII+ + Sbjct: 352 LKRIAEILINTFKEDVF--RIGGDEFVVVCNNTSEEKFKEDIKYLRKIIDLDK------- 402 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +++S G K + I RAD+ +Y KK+ Sbjct: 403 --DLSVSIGTDWNTGKIMVDKQIARADKLMYAEKKN 436 >gi|152985451|ref|YP_001349603.1| hypothetical protein PSPA7_4249 [Pseudomonas aeruginosa PA7] gi|150960609|gb|ABR82634.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 434 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 18/175 (10%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 ++ L+ D L+ L N + F L + E+L+++F D D FK+IND GH GD Sbjct: 244 LAHLAHHDSLTNLPNRAFFEGRLSRALRDAMQHREQLAVLFIDSDRFKEINDRLGHAAGD 303 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENSQ--I 208 V+ ++ ++ V RLGG+EFA A L S I N II + Q I Sbjct: 304 TVLVNIAMRIRGQLRESDLVARLGGDEFAVLLAPLASGSDALRIADN----IIASMQAPI 359 Query: 209 NISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGR--NRVVCFSD 260 ++ G ++ +++ GIA H + + +++ AD A+Y+AK+ R R+ +D Sbjct: 360 RLADGSTVSTSLTIGIALYPDHADNPAALLHDADMAMYIAKRQARGSRRLADLND 414 >gi|88705562|ref|ZP_01103272.1| GGDEF family protein [Congregibacter litoralis KT71] gi|88700075|gb|EAQ97184.1| GGDEF family protein [Congregibacter litoralis KT71] Length = 981 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 65/212 (30%), Positives = 95/212 (44%), Gaps = 25/212 (11%) Query: 69 LSLVIISITISLLLGYISGSI--------------LKELFISYNRISQLSRIDCLSGLLN 114 L + +I++ +SLL Y S S +EL + R+ SRID L+G+ N Sbjct: 755 LGVALIALLVSLLQRYQSRSARQREQQLRQLVDLRTEELRDALVRVEANSRIDSLTGVAN 814 Query: 115 HSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV-VVF 166 L + +SI+ DID FKQ ND+ GH GD + ++ + + Sbjct: 815 RRHLEEHLNATWSMSRRTGTPVSILMLDIDLFKQYNDSLGHAAGDDCLRTIAQAIKGKLL 874 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NISSGPSIHITISAGIA 225 + R GGEEF + A AN + + + + + +S S H+TIS G A Sbjct: 875 REHDMLARYGGEEFVVVLYDTDAAGAVRTANRILECVRALALQHPASQVSEHVTISIGCA 934 Query: 226 ERCHKE--PISTIIYRADQALYVAKKSGRNRV 255 KE +I AD+ALY AK GRNRV Sbjct: 935 SMGDKERDDPHRLIDLADKALYEAKAKGRNRV 966 >gi|317489088|ref|ZP_07947613.1| GGDEF domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911820|gb|EFV33404.1| GGDEF domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 620 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIA 156 +++ S++D L+ N AF + + + S + D+D FKQ+ND +GH +GD+V+ Sbjct: 462 LTRKSQMDGLTKTFNKMAFQEKMAALLPETSRGLLFVIDMDRFKQVNDEYGHSMGDRVLE 521 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 ++ L+ VF VGR+GG+EF A +G+++ +A I A R+ + +S S + Sbjct: 522 EVARSLLDVFRHRDPVGRVGGDEFVAFLVGAND-DAVIEAK--REALSSSIAEASRSLGV 578 Query: 217 HITISAGIAERCHKEPISTIIYR-----ADQALYVAKKSGR 252 I +S G+A + P Y+ AD+A+Y K GR Sbjct: 579 PIALSVGVA----RYPQDGATYQELFDAADRAMYDEKNEGR 615 >gi|332994704|gb|AEF04759.1| sensory box protein [Alteromonas sp. SN2] Length = 723 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 7/167 (4%) Query: 99 RISQLSRIDCLSGLLNHSA----FISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 R+ QL+ D L+GL N SA F S+ + L +VF D+D FK IND GH GD Sbjct: 290 RLKQLALYDELTGLNNRSALRDIFQQLFDSHGDFL-VVFIDLDGFKAINDTAGHEKGDVE 348 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ L FG V R GG+EF A + + A + L ++IE + ++ Sbjct: 349 LQRVAALLTASFGPFGDVARWGGDEFIAVLSRQNIEWAVEKSEALIRLIEEDVV-VTKKV 407 Query: 215 SIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + ++ S GIA+ H + I ++ AD A+Y AKK G+ +V + D Sbjct: 408 ELKLSASIGIAKFPEHNDSIEGVVQCADAAMYHAKKLGKGQVNVYED 454 >gi|313681601|ref|YP_004059339.1| diguanylate cyclase with pas/pac sensor [Sulfuricurvum kujiense DSM 16994] gi|313154461|gb|ADR33139.1| diguanylate cyclase with PAS/PAC sensor [Sulfuricurvum kujiense DSM 16994] Length = 428 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 14/167 (8%) Query: 98 NRISQLSRIDCLSGLLNHSAF--------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 RI LS D L+ L N F + + ++ D+D+FK++ND FGH Sbjct: 264 KRIELLSITDPLTKLFNRHKFNEVFENMVLRRHWDEHRTFGLIIADVDHFKRVNDTFGHQ 323 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD+V+ ++ T + R GGEEF ++A +A LR +E Sbjct: 324 SGDRVLIEVAHIFSQTIRTGDILARWGGEEFVCLLPDVDREKALYVAEKLRLAVEQLHF- 382 Query: 210 ISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 P + +T S G+ + ++++RAD +LY AK++GRNRV Sbjct: 383 ----PDVGTVTSSFGVTIFASGDTQESMMHRADLSLYKAKENGRNRV 425 >gi|269961827|ref|ZP_06176184.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833405|gb|EEZ87507.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 648 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 46/206 (22%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN---------HSAFISSL 122 V++++T++ +L + + QLS +D L+ L N H + + Sbjct: 460 VVLALTVTKVLATQRKN---------QELEQLSLLDPLTQLHNRRYYYAQIDHPEHLDAK 510 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 Y +V FDID FKQ+ND GH GD+++ +++L V + + R GGEEF Sbjct: 511 AEYR----VVLFDIDNFKQVNDVHGHETGDRILEGFAERLRVHVQSQELLIRWGGEEFLM 566 Query: 183 AALGSSEQEAAILANDLRKIIENSQINI------SSGPSIHITISAGIAERCHKEPISTI 236 + +DL K +E + +I + S+++T S G++ H I T Sbjct: 567 LLKTT---------DDLAKRLEEMRQHIGDVSFETEESSLNVTTSIGVS---HGGLIETF 614 Query: 237 IY------RADQALYVAKKSGRNRVV 256 Y RAD++LY AK++G+++VV Sbjct: 615 TYNDEYFRRADKSLYEAKRNGKDQVV 640 >gi|264677842|ref|YP_003277748.1| diguanylate cyclase [Comamonas testosteroni CNB-2] gi|262208354|gb|ACY32452.1| diguanylate cyclase [Comamonas testosteroni CNB-2] Length = 398 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 10/165 (6%) Query: 107 DCLSGLLNHSAFISSLGSY--NEKL---SIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+ LLN AF+ + S +++L ++V DID+FK INDN+GH GD+V+ L+ Sbjct: 230 DSLTRLLNRRAFMEAAESRLADQRLVPWAVVAVDIDHFKYINDNWGHAAGDQVLQQLAQL 289 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDLRKIIENSQINISSGPSIHIT 219 L V R GGEEF L S Q EA + +R ++ SQ+ + +T Sbjct: 290 LTQQVRDCDLVARFGGEEF--VLLLSRVQLFEAQAIVERVRDRLQ-SQVLGGLAAQLRVT 346 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 S GIA + + RAD LY AKK+GR+ V+ + E+ Sbjct: 347 ASFGIAALSSAQDFEQALARADALLYQAKKAGRDCVMSSAQDESE 391 >gi|260557942|ref|ZP_05830155.1| WspR [Acinetobacter baumannii ATCC 19606] gi|260408733|gb|EEX02038.1| WspR [Acinetobacter baumannii ATCC 19606] Length = 593 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 ++ ++ D L+G+ N S ++ + SY +K S ++ DID FK +ND +GH VGD Sbjct: 430 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKHVNDQYGHIVGD 489 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 +VI ++DQL + R GG+EF +A +LA +R I +I++S Sbjct: 490 QVIRRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSG 549 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +H+++S G A ++ AD++L AK GRN V Sbjct: 550 TQEKLHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 591 >gi|218440595|ref|YP_002378924.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Cyanothece sp. PCC 7424] gi|218173323|gb|ACK72056.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Cyanothece sp. PCC 7424] Length = 1262 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 14/182 (7%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 G + ++L + + +LS +D L+ + N F L + LS++ D+D+F Sbjct: 1079 GELYQQLESANLELKKLSCLDGLTQVANRHRFDMYLDQEWRRLMRSQQFLSLILCDVDHF 1138 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAND 198 K ND +GH GD+ + ++ + G P V R GGEEFA + + A +A Sbjct: 1139 KGYNDTYGHLAGDQCLQQVAQVIKNAVGRPADLVARYGGEEFAIILPDTPLRGALYVAEQ 1198 Query: 199 LRKIIENSQINISSGPSIH--ITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNR 254 +R+ ++ + I S H +T+S+G+A +S +I AD+ALY AK +GRN+ Sbjct: 1199 IRQQVQ--YLTIPHPQSTHQWVTLSSGVASFIPSAALSPKALINAADEALYQAKANGRNQ 1256 Query: 255 VV 256 VV Sbjct: 1257 VV 1258 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 18/168 (10%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDK 153 SY+ I+QL + NH ++ + + N+ L +V D++ FK+IND+ GH VGD Sbjct: 415 SYDVITQLPN----GIIFNHRLSLALVDAVNQGNMLGVVILDLNQFKRINDSLGHGVGDF 470 Query: 154 VIAFLSDQLVVVFGT-----PMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIENS 206 ++ + D+L T P+ + R G F + L S++ + L E Sbjct: 471 LLTKVRDRLQNALDTYSIFNPL-LARWHGARFIILLSKLSYSDESVMVCQKLLNDFQEPF 529 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253 + +I++ S GIA + + I+ + A+ A+Y AKK G+N Sbjct: 530 YVQ---SQAIYLGASLGIALAPYDGDTAEILLKNAESAMYEAKKQGKN 574 >gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 866 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 ID L+ + N + F +S Y +LS++ DID FK IND +GH GD V+ Sbjct: 701 IDGLTKVYNRNYFDMYLAQEVSRAKRYKRELSLIITDIDLFKNINDTYGHLTGDTVLQEF 760 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + ++ V R GGEEF + + I+A + + I+ HI Sbjct: 761 TQIIMQQCRRSDLVARFGGEEFIILLPETPLKGGTIVAERMCQRIDAHIFQEVE----HI 816 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 T S G+A ++ RAD ALY AKK+GRN+VV Sbjct: 817 TASFGVASLITDRDGRELLRRADSALYQAKKNGRNQVV 854 >gi|327481458|gb|AEA84768.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 396 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 90/177 (50%), Gaps = 13/177 (7%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDI 136 +++ ++++E R + LS D L+G+ N +FI + + E ++++ D+ Sbjct: 200 FVTLAMVRERAEQQYRHASLS--DPLTGIGNRRSFIDAGQALLQRCRARGEPVTLLLCDL 257 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK++ND FGH GD+ + + GR+GGEEF A L ++ A++ Sbjct: 258 DFFKRLNDTFGHQAGDRALIDFGQVIARRMRRQDVFGRIGGEEF-ACLLADAD---ALIG 313 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ + I + +++S G+A + + ++ +AD+ALY AK +GRN Sbjct: 314 REVAERIRGEFAAMPFAEQGQLSVSIGVATTTSRYELDELMAQADRALYAAKAAGRN 370 >gi|330810152|ref|YP_004354614.1| Diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378260|gb|AEA69610.1| putative Diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 324 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 102 QLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 Q++ +D L+ L N F ++ + +++FFD++ FK IND +GH GD Sbjct: 166 QMASMDELTLLSNRRGFRTLAQHALNVCDRLSRPATLLFFDLNDFKPINDRYGHAEGDNA 225 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + +D L + F +GRLGG+EF A GSS E A + L++I++ + G Sbjct: 226 LKTFADVLRIAFRESDVIGRLGGDEFVALLTGSSHVEIAAIMARLQEILDERNAMLQRGY 285 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I ++ + + I ++ AD A+Y K++ R+ Sbjct: 286 DIRFSVGQIEYDPQRHQSIDMLLADADAAMYAQKQALRS 324 >gi|293606971|ref|ZP_06689316.1| sensory box/GGDEF/GAF/EAL domain protein [Achromobacter piechaudii ATCC 43553] gi|292814631|gb|EFF73767.1| sensory box/GGDEF/GAF/EAL domain protein [Achromobacter piechaudii ATCC 43553] Length = 935 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 15/177 (8%) Query: 102 QLSRI---DCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 QL R+ D L+GL N I+ L +V D+D FK++ND GH VG Sbjct: 382 QLERVAHYDLLTGLPNRLLLGDRLKQAIAQTRRRGMHLVVVLIDLDGFKKVNDQHGHAVG 441 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 DK+++ LS ++ V + RLGG+EF A + + ++ D ++IE + + Sbjct: 442 DKLLSVLSRRMTQVLREGDTLARLGGDEFVAVLVDLPDISLSVPILD--RLIEVAAQPVP 499 Query: 212 SGPSI-HITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENNT 265 G ++ ++ S G++ E I ++ +ADQA+Y AK++G+NR F ++ T Sbjct: 500 IGDALCEVSASIGVSYYPQAEDIDADQLLRQADQAMYFAKQAGKNRYHVFDTEKDRT 556 >gi|225871850|ref|YP_002753304.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196] gi|225791908|gb|ACO31998.1| GGDEF domain protein [Acidobacterium capsulatum ATCC 51196] Length = 404 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 14/155 (9%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D +SG LN + + + LS+ DID+FK++ND GH GD + Sbjct: 234 LDFVSGTLNRRGIEQIMEVEMERCRRHGQPLSLALLDIDHFKRLNDTQGHAAGDLALVQA 293 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 ++ + VGR GG+EF +S + A + N +R+ ++ + Sbjct: 294 ANLIRESLRPYDQVGRYGGDEFLLVLPSTSTESAEGILNRIRE-------RVARNHPLRC 346 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 T+SAG+ ++ +++++ RAD ALY AK GRN Sbjct: 347 TLSAGLTALIPRDDMASLLARADNALYDAKTDGRN 381 >gi|225850131|ref|YP_002730365.1| signal transduction response regulator [Persephonella marina EX-H1] gi|225645985|gb|ACO04171.1| signal transduction response regulator [Persephonella marina EX-H1] Length = 636 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 24/171 (14%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 +YNR + ++ ++ LLN +++ + D+D FK+IND +GH VGD V+ Sbjct: 233 TYNR----NYLEDMASLLNPASY-----------HVALIDLDDFKKINDTYGHDVGDLVL 277 Query: 156 AFLSDQLV-VVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAI-LANDLRKIIENSQINISS 212 +++ + V V R GGEEF G +++A+I A L + I N +I+I + Sbjct: 278 KKIAETIKSSVRKDEDIVIRYGGEEFLVLIKAGRKDKKASINAAERLLRDIRNRKIDI-N 336 Query: 213 GPSIHITISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G I +T S G+ ER H I I ++D ALY AK +G+NR+ +S+ Sbjct: 337 GEEISVTASIGLNIYTERSH--SIYDAIKKSDIALYQAKANGKNRIEIYSE 385 >gi|197119088|ref|YP_002139515.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] gi|197088448|gb|ACH39719.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] Length = 314 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 25/256 (9%) Query: 18 NLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI------LVENLSL 71 ++ +P T ++ + S+ A A + + + PF L+ I E L Sbjct: 65 EIKEHNPDTQVVIMTSHASLDSALTALRAGAYDYLV--KPFESLDLISAVAGRAAEKARL 122 Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGS 124 V + + L + LKE ++ + +L+ D L+ L NH F ++ Sbjct: 123 VTQNRELLEQLTRANAE-LKEANLA---LKELAVHDGLTALYNHRYFEEAFVLEVARSKR 178 Query: 125 YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAA 184 Y ++ S++F D+D FK+ ND GHP GD ++ L+ + R GGEEF Sbjct: 179 YGKQCSLIFMDVDNFKRYNDTNGHPQGDALLKTLAQLMTTHLRICDTAARYGGEEF-VLL 237 Query: 185 LGSSEQEAAI-LANDL-RKIIENSQINISSGPSIHITISAGIA--ERCHKEPISTIIYRA 240 L + +EAA+ +A +L R++ E+ + P +TIS G+A R + + + A Sbjct: 238 LPETPKEAALGVAEELRRRVAEHPFPGGETQPLGKVTISIGVAAYPRDGMDAPELLDF-A 296 Query: 241 DQALYVAKKSGRNRVV 256 DQ LY AK SG+N VV Sbjct: 297 DQLLYKAKNSGKNMVV 312 >gi|78777708|ref|YP_394023.1| diguanylate cyclase [Sulfurimonas denitrificans DSM 1251] gi|78498248|gb|ABB44788.1| diguanylate cyclase (GGDEF domain) [Sulfurimonas denitrificans DSM 1251] Length = 416 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 15/177 (8%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 K+L I+ R+ S D L+ L N F I ++ + DIDYFKQ N Sbjct: 223 KKLKIANKRLESASYTDSLTSLHNRRYFNMVYEREIKRAKRNYTYITFMMLDIDYFKQYN 282 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTP-MFVGRLGGEEFAAAALGSSE----QEAAILAND 198 D +GH GD + ++ + P FV RLGGEEF +SE A + N Sbjct: 283 DTYGHVKGDVALKSVASVFKELLKRPGDFVFRLGGEEFGILLTDTSEVNTITTAQNICNA 342 Query: 199 LRKI-IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 ++++ IE+ I + +I I ++ +A+ E + +I +AD+ LY AK+ GRNR Sbjct: 343 VKELKIEHEASKIDTFLTISIGVACCVADSALDEEV--LINKADEMLYSAKEGGRNR 397 >gi|23500728|ref|NP_700168.1| GGDEF domain-containing protein [Brucella suis 1330] gi|256015764|ref|YP_003105773.1| GGDEF domain protein [Brucella microti CCM 4915] gi|23464380|gb|AAN34173.1| GGDEF domain protein [Brucella suis 1330] gi|255998424|gb|ACU50111.1| GGDEF domain protein [Brucella microti CCM 4915] Length = 369 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152 N + + D L+GLLN + L + + ++ DID+FK IND +GHPVGD Sbjct: 190 NELQRERDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVIIADIDHFKAINDAYGHPVGD 249 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211 +V+ + L VGR+GGEEF G++E E L N L ++ + + Sbjct: 250 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 308 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +G +T S GIA E + RAD AL K GRNRV Sbjct: 309 AGQK--VTSSFGIAMVRSGETLWETAARADLALMRVKNLGRNRV 350 >gi|85703538|ref|ZP_01034642.1| diguanylate cyclase, putative [Roseovarius sp. 217] gi|85672466|gb|EAQ27323.1| diguanylate cyclase, putative [Roseovarius sp. 217] Length = 336 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 12/158 (7%) Query: 107 DCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+GL N A + L + +++ D+D+FKQ+ND GH GD V+ ++++L+ Sbjct: 167 DTLTGLRNRRALDHVLDRLMQSEQDFALLHLDLDFFKQVNDTLGHAAGDHVLQVVAERLL 226 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL--RKIIENSQINISSGPSIHITIS 221 + R+GG+EF LG ++ DL R I + + I+ S Sbjct: 227 TEVRADDLIARVGGDEFVILLLGMTDHAP---TKDLATRMIARLQEPVVFHAQECRISAS 283 Query: 222 AGIAERCH---KEPISTIIYRADQALYVAKKSGRNRVV 256 G+ C EP+ ++ AD ALY K SGR R + Sbjct: 284 IGVTLSCDYDIPEPVR-MMADADLALYAVKASGRGRAI 320 >gi|261212236|ref|ZP_05926522.1| hypothetical protein VCJ_002510 [Vibrio sp. RC341] gi|260838844|gb|EEX65495.1| hypothetical protein VCJ_002510 [Vibrio sp. RC341] Length = 684 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 7/168 (4%) Query: 104 SRIDCLSGLLNHSAFISSLGS--YNE-KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 + +D L+GL N F L +NE L +++ DID FK IND+ GH +GDKVI ++ Sbjct: 256 AHMDSLTGLYNRHGFTKRLEQLIHNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAA 315 Query: 161 QLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L + +G LGG+EF + A +LA+ + +I N ++ S + Sbjct: 316 RLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLI-NQPFDLHHF-SKRLA 373 Query: 220 ISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENNTC 266 S G + ++ AD A+Y AK+ GRNR++ F+D N Sbjct: 374 CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421 >gi|148558282|ref|YP_001257918.1| GGDEF domain-containing protein [Brucella ovis ATCC 25840] gi|148369567|gb|ABQ62439.1| GGDEF domain protein [Brucella ovis ATCC 25840] Length = 369 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152 N + + D L+GLLN + L + + ++ DID+FK IND +GHPVGD Sbjct: 190 NELQRERDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVIIADIDHFKAINDAYGHPVGD 249 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211 +V+ + L VGR+GGEEF G++E E L N L ++ + + Sbjct: 250 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 308 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +G +T S GIA E + RAD AL K GRNRV Sbjct: 309 AGQK--VTSSFGIAMVRSGETLWETAARADLALMRVKNLGRNRV 350 >gi|152998842|ref|YP_001364523.1| diguanylate cyclase [Shewanella baltica OS185] gi|151363460|gb|ABS06460.1| diguanylate cyclase [Shewanella baltica OS185] Length = 389 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEKL-------SIVFFDIDYFKQINDNFGHPV 150 ++I L+ D L+GL N A L + +++ S++ D+D+FK+IND +GH Sbjct: 222 SKIRMLAERDQLTGLWNRRAMHKFLNNIHQRWLRDNVPYSMILLDLDHFKEINDQYGHDA 281 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + + V + R GGEEF + A +A L ++++++ + Sbjct: 282 GDLALLTAARLFGSVLRENDALCRHGGEEFLVILPTTDAPAARAVAEKLHQVLKDNSF-V 340 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 G +I I S G A ++ +ADQA+Y AK GR+R+ Sbjct: 341 CQGVTIKIHASLGYATIYQGCQPDKLLIQADQAMYRAKSEGRDRI 385 >gi|6759486|emb|CAB69812.1| YkoW protein [Bacillus cereus ATCC 14579] Length = 892 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 453 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 512 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH +GD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 513 LGHELGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 572 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 573 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 626 >gi|52841587|ref|YP_095386.1| inner membrane protein PLUS sensory box protein LssE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628698|gb|AAU27439.1| inner membrane protein PLUS sensory box protein LssE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 792 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R++ + D L+GL N +A L N LS++F DID FK IND+ GH G Sbjct: 352 RLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAG 411 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ S +L V R GG+EF + + ++ ++A ++ K + I + Sbjct: 412 DILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILIAQNILKAVAQP-IKLP 470 Query: 212 SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253 + I +T S GI+ K+ I ST++ +D A+Y+AKK GRN Sbjct: 471 TQEVI-VTTSIGIS-LFPKDGIDASTLLKNSDTAMYLAKKEGRN 512 >gi|308048315|ref|YP_003911881.1| diguanylate cyclase/phosphodiesterase [Ferrimonas balearica DSM 9799] gi|307630505|gb|ADN74807.1| diguanylate cyclase/phosphodiesterase [Ferrimonas balearica DSM 9799] Length = 822 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 95/173 (54%), Gaps = 13/173 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPV 150 N + +++ +D L+GL N + F + S+G +++++++F D+D FK++ND GH + Sbjct: 369 NELQRMAMMDALTGLPNRAMFHHELAKALGSIGRTDDQIALLFLDLDEFKRVNDTLGHDI 428 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD+++ ++++L + V RLGG+EF G E E I + +I + Q + Sbjct: 429 GDELLKTVANRLQKSIRSMDTVCRLGGDEFTIIVRG-LESEGDI-HRIIHQIFTSLQQPL 486 Query: 211 SSGP-SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 G ++ IT S G+ + P ++ RAD A+Y AK++GR+ F++ Sbjct: 487 QLGRHTLIITTSIGVVFCDNPMMRP-EELLKRADLAMYQAKQAGRSNYRVFNE 538 >gi|330957687|gb|EGH57947.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 682 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 40/235 (17%) Query: 55 LTPFYGLEYILVENLSLVIISITISLLLGYISGS------------------ILKELFIS 96 LTP G + L L I +IT+ ++ G IS + +L +L + Sbjct: 139 LTPSTGNS----QQLGLTIAAITLLIIAGSISAAMADKKLQSKEHDLQRVNALLSQLDQA 194 Query: 97 YNRISQLSRIDCLSGLLNHSAFIS---------SLGSYNEKLSIVFFDIDYFKQINDNFG 147 + Q++ D L+ L+N F +LG L+++F DID+FK+IND+ G Sbjct: 195 RVSLQQVAHYDPLTNLINRRGFNQIFAEKLLEHTLG--KGMLAVMFLDIDHFKRINDSLG 252 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H GD+++ +++++ V R GG+EF +EA LA+ ++++ + Sbjct: 253 HDAGDELLKVIAERIRSATRVQDVVSRFGGDEFCILLSIPDYEEARHLAH---RVMQKMK 309 Query: 208 INIS-SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259 I+ +G + +T S GIA ++ I+ ++ AD ALY +K +GRNRV FS Sbjct: 310 ETIALAGRRMVMTTSIGIAV-FPRDGITCDELLKHADLALYQSKGAGRNRVNFFS 363 >gi|320333481|ref|YP_004170192.1| diguanylate cyclase with PAS/PAC and GAF sensors [Deinococcus maricopensis DSM 21211] gi|319754770|gb|ADV66527.1| diguanylate cyclase with PAS/PAC and GAF sensors [Deinococcus maricopensis DSM 21211] Length = 1197 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 8/165 (4%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q S D L+GL N + + + ++ DID+FK+ ND +GH GD Sbjct: 1030 LRQQSIRDALTGLFNRRYLEETFEREMRRAHRHRHPMGLIMLDIDHFKRFNDTYGHEAGD 1089 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ L + L R GGEEFA G++ ++ A A +R+ + + + Sbjct: 1090 LLLRALGETLSANVRGEDVACRFGGEEFALLLPGATIEQTAARAEHIRQAVMQLHVTVRG 1149 Query: 213 GPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +T S G+A + E ++ +++ AD ALY AK GRN VV Sbjct: 1150 QALGQVTASFGVAVFPQYGEALADLMHAADFALYRAKSEGRNCVV 1194 >gi|317121578|ref|YP_004101581.1| diguanylate cyclase with GAF sensor [Thermaerobacter marianensis DSM 12885] gi|315591558|gb|ADU50854.1| diguanylate cyclase with GAF sensor [Thermaerobacter marianensis DSM 12885] Length = 562 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 16/185 (8%) Query: 88 SILKELFISYNRISQLSRI------DCLSGLLNHSAFISSL-------GSYNEKLSIVFF 134 +I E+ ++ R L R+ D L+GL N + + L Y LS++F Sbjct: 364 AIADEVAVALERARLLERVEQQAITDPLTGLYNRTYLVERLREEGERAARYGRPLSLLFI 423 Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+D K IND GH GD+V+ ++ L + F R GG+EF + + A Sbjct: 424 DLDDLKVINDRLGHDAGDRVLVRVARVLREACRSVDFAARYGGDEFVVVLPETGPEGAMA 483 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 +A +++ + +++G I ++A A H + ++ ADQA+Y AK+ G+ R Sbjct: 484 VAARIQQRLAEQTSPLAAGLGASIGLAAYPA---HARDWTELLRLADQAMYGAKRRGKGR 540 Query: 255 VVCFS 259 V F Sbjct: 541 VGWFG 545 >gi|254687210|ref|ZP_05151068.1| sensory box/GGDEF family protein [Bacillus anthracis str. CNEVA-9066] gi|254724703|ref|ZP_05186486.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055] gi|254755818|ref|ZP_05207850.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum] gi|254762158|ref|ZP_05214004.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia 94] Length = 604 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 165 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 223 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKII 203 GH +GD ++ ++ +L + V R GG+EF SE+ AA +A + Sbjct: 224 RLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQI---- 279 Query: 204 ENSQINISSGP------SIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +NI + P + IT S GIA C + ++ ++ AD A+Y AK +G+NR Sbjct: 280 ----LNILNKPFFIKDEELSITPSIGIAMYPDCGTD-VTELMKNADMAMYRAKANGKNRF 334 Query: 256 VCFS 259 V FS Sbjct: 335 VFFS 338 >gi|171317768|ref|ZP_02906949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria MEX-5] gi|171097052|gb|EDT41907.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria MEX-5] Length = 667 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 17/173 (9%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDIDYFKQINDNFGHPV 150 R+S+L+ D L+GL N A +G+ ++ I+F D+D FK++ND++GH Sbjct: 231 RLSELANTDMLTGLPNRHAISERIGAALAVDRTDMRGQVGILFLDLDNFKRVNDHYGHIT 290 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSS---EQEAAILANDLRKIIENS 206 GD+++ +S + + + RLGG+EF G+ E A I+ LR I Sbjct: 291 GDRLLQDVSTIISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQIILERLRTPIHLG 350 Query: 207 QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 + + + SI I + H + + T+I AD A+YVAK+ G++ FS Sbjct: 351 LMEVYTSCSIGIAMYP-----QHGDSLETLIRSADTAMYVAKEEGKHTYRVFS 398 >gi|161524101|ref|YP_001579113.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans ATCC 17616] gi|189351142|ref|YP_001946770.1| signal transduction GGDEF/EAL domain protein [Burkholderia multivorans ATCC 17616] gi|221199545|ref|ZP_03572589.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans CGD2M] gi|221205555|ref|ZP_03578570.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Burkholderia multivorans CGD2] gi|160341530|gb|ABX14616.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans ATCC 17616] gi|189335164|dbj|BAG44234.1| signal transduction GGDEF/EAL domain protein [Burkholderia multivorans ATCC 17616] gi|221174393|gb|EEE06825.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Burkholderia multivorans CGD2] gi|221180830|gb|EEE13233.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans CGD2M] Length = 778 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%) Query: 62 EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118 +Y N+ L++ S IT+++L G +G I K L ++QL+ D L+GL N A Sbjct: 290 DYYHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEYDLLTGLANRYAT 348 Query: 119 IS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 + S+ S +L ++F D+D FK +ND GH GD V+ + +L G + Sbjct: 349 LRGLRNDVSMPSSLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGTL 408 Query: 173 GRLGGEEFAAAALGSS-EQEAAILAND-LRKIIENSQINISSGPSIHITISAGIA-ERCH 229 R+GG+EF G E+ A LA +R E + G S + S GIA Sbjct: 409 ARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFAEPFDVR---GSSFVLHASIGIALHTVA 465 Query: 230 KEPISTIIYRADQALYVAKKSGRN 253 E ++ +AD A+Y AK +G+N Sbjct: 466 NESEIDLLKKADLAMYSAKDAGKN 489 >gi|313681961|ref|YP_004059699.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Sulfuricurvum kujiense DSM 16994] gi|313154821|gb|ADR33499.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfuricurvum kujiense DSM 16994] Length = 571 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 11/169 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 I L++ D L+ L N + F I+ S ++ +++ D+D FK +ND+ GH VGD Sbjct: 141 IRHLAKFDPLTNLPNRNFFRDELESRINQANSSSQYFGLLYIDLDRFKMVNDSLGHTVGD 200 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENSQINIS 211 +++ L+++ + F+ RLGG+EFA AL S++ + A ++ + I+ + Sbjct: 201 RLLQKLAERFTSINEQNHFIVRLGGDEFAVITALVDSKKTVEMFAKNVHEAIKTPF--VI 258 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 I++T S GIA E +I AD A+Y AK +G+N + F Sbjct: 259 DNNDIYMTASIGIALYPQDGENSELLIKAADMAMYGAKINGKNTYLFFE 307 >gi|297569012|ref|YP_003690356.1| diguanylate cyclase with GAF sensor [Desulfurivibrio alkaliphilus AHT2] gi|296924927|gb|ADH85737.1| diguanylate cyclase with GAF sensor [Desulfurivibrio alkaliphilus AHT2] Length = 493 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 77/161 (47%), Gaps = 13/161 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G+ N F+ K LS++F DID+FK +NDNFGH GD+V+ L+ Sbjct: 201 DGLTGIYNRRFFLECAERELHKCQRGSNSLSLLFIDIDHFKDVNDNFGHVFGDQVLRQLA 260 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR-KIIENSQINISSGPSIHI 218 L R GGEEF ++ + A LA LR K+ E+ I Sbjct: 261 KILQCGIRQSDIPARYGGEEFVVLLPDTNGEAACCLAEKLRSKVAEDLVATPPHEQPKTI 320 Query: 219 TISAGIAERCHKEPISTII---YRADQALYVAKKSGRNRVV 256 ++ G+A + E T+I AD+ LY K+ GRNRVV Sbjct: 321 NLTVGVAS--YPEDGKTVIDLLRVADRRLYKGKEEGRNRVV 359 >gi|254820324|ref|ZP_05225325.1| GGDEF domain-containing protein [Mycobacterium intracellulare ATCC 13950] Length = 621 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 9/176 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDYFKQIND 144 L+ ++ +I L+ D L+GLLN A I+ L K +S+VF ID FK IN Sbjct: 163 LQARVVAEQQIHYLAEHDELTGLLNRRALIAHLDDRLAKGQPGPVSVVFLAIDRFKVINS 222 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAA-ILANDLRKII 203 G GD+ I + L P + R GG+EF + + EAA A+ L + Sbjct: 223 RLGQDAGDRFIESFAALLREATRVPSVIARFGGDEFGVVPSAAMDVEAAEAFAHSLHGRV 282 Query: 204 ENSQINISSGPSIHITISAGIAERCH-KEPISTIIYRADQALYVAKKSGRNRVVCF 258 + QI I G + T+S G+A E S ++ R DQA AK SG N V F Sbjct: 283 -HQQIPI-DGEMLSRTVSIGVAAGLPGDETTSDLLRRVDQATRSAKASGGNNVATF 336 >gi|256829806|ref|YP_003158534.1| response regulator receiver modulated diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gi|256578982|gb|ACU90118.1| response regulator receiver modulated diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] Length = 310 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 19/185 (10%) Query: 85 ISGSILKELFISYNR--ISQLSRIDCLSGLLNHSAFIS-SLGSYNE------KLSIVFFD 135 I I L + NR + LS +D L+ + N F + +N LS++F D Sbjct: 117 IRARIRNHLELKRNRDLLENLSTLDGLTNIPNRRRFDEIYIQEWNRALRTKSSLSLLFID 176 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAI 194 ID+FK ND +GH GD + ++ L G P F+ R GGEEF + EQ Sbjct: 177 IDHFKNYNDLYGHMAGDDCLKAVARVLQSSLGRPADFLARFGGEEFIILLPDTKEQGCLH 236 Query: 195 LANDLRKIIENSQI-NISSGPSIHITISAGI-----AERCHKEPISTIIYRADQALYVAK 248 LA ++R+ ++ I ++ S + ++T+S G +C + S ++ +AD+ LY AK Sbjct: 237 LAENIRRALKELHIEHLDSSVADYLTVSIGAVTCNDVTQCDR---SFLLEQADKLLYQAK 293 Query: 249 KSGRN 253 GRN Sbjct: 294 HEGRN 298 >gi|171316975|ref|ZP_02906182.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] gi|171097899|gb|EDT42719.1| diguanylate cyclase [Burkholderia ambifaria MEX-5] Length = 492 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 12/171 (7%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155 L+R D L+GL N +F L + S++F D+D FK ND +GH GD + Sbjct: 323 LARTDGLTGLNNRRSFGEVLDREWRRARRTHSVFSLLFVDVDRFKAYNDTYGHQAGDDAL 382 Query: 156 AFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 A ++ + P+ R GGEEF + AA +A +R I+ + + Sbjct: 383 AAVARCIGENIRRPVDTAARYGGEEFVVLLPDTPPAGAAQIAERIRAAIDELALEHAGSE 442 Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +T S G+A EP +I AD+ALY AK GRNRV ++ Sbjct: 443 YGRVTASIGLASWTPEQDNEP-GAVIKAADEALYYAKTIGRNRVAALQPLD 492 >gi|171058751|ref|YP_001791100.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170776196|gb|ACB34335.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 729 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 18/196 (9%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRI----------DCLSGLLNHSAFISS 121 V + +TI+ L G SG +S N IS+ R+ D ++GL N SA + Sbjct: 262 VPVDVTITTLPGDHSGGTY---LVSLNDISEQRRVEARLEHLALSDAVTGLPNRSALENQ 318 Query: 122 LG---SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGE 178 L + ++++ D++ K++ND+FGH GD ++ L+D+L + F+ R GG+ Sbjct: 319 LLRQLDREQAFALMYLDVEGVKEVNDSFGHDAGDDLLRQLADRLRTILPAGTFISRWGGD 378 Query: 179 EFA-AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTII 237 EF A GS E E A + + + S+ +I A + R +E ++ Sbjct: 379 EFVLVLAPGSGETEVRSCAQTMIAALSPPMKVFLNEISVAPSIGAVLVPRDGRE-SGLLL 437 Query: 238 YRADQALYVAKKSGRN 253 +AD A+ AK GR+ Sbjct: 438 RKADSAMQAAKLRGRD 453 >gi|188991602|ref|YP_001903612.1| Putative sensor protein [Xanthomonas campestris pv. campestris str. B100] gi|167733362|emb|CAP51563.1| Putative sensor protein [Xanthomonas campestris pv. campestris] Length = 975 Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN S + ++ S L++V D+D+FK +ND GH VGD V+A + Sbjct: 811 DALTGLLNRSGVLEAMAEELQQCASTGHPLAVVLIDLDHFKLVNDEHGHLVGDAVLAQVG 870 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L VGR GGEE G ++Q L + + I + + + +T Sbjct: 871 ARLTNCLRDSDKVGRYGGEELLLLLPGMTQQSQHRL-RAIHEAIGATPYEVGIARPLRVT 929 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A + T++ RAD+ALY AK GRNR+ Sbjct: 930 CSVGVAWFRSGDSTPTLLARADEALYRAKGQGRNRI 965 >gi|332994026|gb|AEF04081.1| signal transduction protein [Alteromonas sp. SN2] Length = 1045 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 26/180 (14%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ ++ D L+ L N S +S S +++ D+D FK+INDNFGH VG Sbjct: 597 KLEHMAHYDVLTNLPNRSLLAERLDRALSQCKSDKGFVAVALLDLDGFKEINDNFGHSVG 656 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA--AALGSSEQEAAILANDLRKIIE----- 204 D+++ L+ +L + R GG+EF A L + AI+ N LR E Sbjct: 657 DELLVILAHRLKGTLRETDTISRFGGDEFVTVLANLKQPQDFVAIIKNMLRVASEPVKIG 716 Query: 205 NSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS--DIE 262 SQ+ +S+ SI +T+ + +I ADQA+Y+AK+ G+N C+ DIE Sbjct: 717 ESQLKVSA--SIGVTLYPADNTDADQ-----LIRHADQAMYLAKQKGKN---CYHLFDIE 766 >gi|220929304|ref|YP_002506213.1| diguanylate cyclase with GAF sensor [Clostridium cellulolyticum H10] gi|219999632|gb|ACL76233.1| diguanylate cyclase with GAF sensor [Clostridium cellulolyticum H10] Length = 558 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 13/167 (7%) Query: 97 YNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHP 149 Y + +++ +D L+G+ N H F + EK LS+V DID+FK ND +GH Sbjct: 386 YANLQEMATVDGLTGVYNRVYFHEKFENEFRMAKEKGYNLSLVILDIDFFKIFNDTYGHL 445 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ + + R GGEEF +S Q+A LR I + I Sbjct: 446 FGDVVLKEVAQTVKNNLRGTDTIARFGGEEFVLILPRTSIQQAHEKVEFLRTRIAGNIIK 505 Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRN 253 + S +T S GIA C+ E S +I AD ALY AK+SGRN Sbjct: 506 -DNLISASVTASFGIA--CYPETSSNQVGLIRDADNALYKAKESGRN 549 >gi|91201200|emb|CAJ74260.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 1069 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 17/163 (10%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N F L Y +++F D+D FK +ND GH GD+++ L+ Sbjct: 657 DPLTNLFNRRRFQEELQYWIAQTLRYGATGALLFLDLDNFKYVNDTLGHQAGDELLIRLA 716 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 + L R GG+EFA + ++A ++AN++ ++ S +T Sbjct: 717 EMLRSRLRDTDIFARFGGDEFAILLPYTDREKAGLIANEILELTREHTFEHSK-----VT 771 Query: 220 ISAGI---AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 S GI E H T++ AD A+Y AK+SGRNR FS Sbjct: 772 FSIGIVIFPE--HGRDAETLLVNADLAMYRAKESGRNRFCVFS 812 >gi|89901321|ref|YP_523792.1| diguanylate cyclase [Rhodoferax ferrireducens T118] gi|89346058|gb|ABD70261.1| diguanylate cyclase [Rhodoferax ferrireducens T118] Length = 398 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 9/164 (5%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N +L N L+ V DID+FK +ND++GH GD+V+ ++ Sbjct: 233 DPLTGLYNRRYLSDALAREIIQAKRANSSLTFVMADIDHFKFVNDSYGHLAGDEVLVQVA 292 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 L R GGEEF G+S + A A ++++ I G +I + Sbjct: 293 SLLKKHARGSDIACRYGGEEFLLVFPGTSLELAHKRAEEIQQNCAALSIQ-HEGKNIAVM 351 Query: 220 ISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 +S G+A H + II +AD+ALY +K +GRN+V F D E Sbjct: 352 LSFGVAAYPDHGQQWEQIIVKADKALYQSKCNGRNQVTIFRDEE 395 >gi|108763499|ref|YP_631206.1| HAMP domain/GAF domain/GGDEF domain-containing protein [Myxococcus xanthus DK 1622] gi|27804877|gb|AAO22911.1| hypothetical protein [Myxococcus xanthus] gi|108467379|gb|ABF92564.1| HAMP domain/GAF domain/GGDEF domain protein [Myxococcus xanthus DK 1622] Length = 645 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 9/167 (5%) Query: 102 QLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +L+ D L+G+ N + + L+++ D+D+FK+IND GH VGD+ Sbjct: 443 KLTMTDPLTGVPNRRHLFQRMELELARSNRFGTPLALLMVDVDHFKRINDLAGHRVGDET 502 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG- 213 + + D L + + R GGEEF +++ EA +A LR+ + S + G Sbjct: 503 LRRVCDVLRLRVRKVDTLARYGGEEFVILLPQTNKAEAMEVAEKLRRAVAESVELVQPGL 562 Query: 214 PSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 P H+T+S G + ++ AD ALY +K++GRNR + Sbjct: 563 PGNHVTVSIGASHFPSDASAQEELVDCADAALYFSKRTGRNRTTQYE 609 >gi|328952931|ref|YP_004370265.1| diguanylate cyclase [Desulfobacca acetoxidans DSM 11109] gi|328453255|gb|AEB09084.1| diguanylate cyclase [Desulfobacca acetoxidans DSM 11109] Length = 254 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 16/200 (8%) Query: 72 VIISITISLL----LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--- 124 +++S+ + LL L Y + +++ + ++ +++ +D L+ L N F G Sbjct: 48 ILVSLAVILLVLGGLYYFIARLTRKVAAAQEKLVKMASVDDLTRLHNRRFFFEQFGQEVE 107 Query: 125 ----YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF 180 Y LS + DID+FK IND +GH +GD+++ ++ L R GG+E Sbjct: 108 RAKRYRRSLSCIMLDIDHFKAINDTYGHLLGDQLLIDIAQILHDNCRLSDLAARYGGDEL 167 Query: 181 AAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA-----ERCHKEPIST 235 + A +A +RK++ QI G I T+S G+A + + Sbjct: 168 IVLLPETEAAGAIAIAERIRKLVAQHQIVGEKGEVIRATVSIGVASLGAGQLQDIDHYDR 227 Query: 236 IIYRADQALYVAKKSGRNRV 255 II AD ALY AK GRNR Sbjct: 228 IIRYADDALYRAKTGGRNRT 247 >gi|325914024|ref|ZP_08176380.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325539793|gb|EGD11433.1| diguanylate cyclase (GGDEF) domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 571 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 96/197 (48%), Gaps = 14/197 (7%) Query: 66 VENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY 125 E LSLV+ S+ + L SI L YNR L LNH ++ Sbjct: 377 AEQLSLVLHSLRLRETL--RQQSIRDPLTGLYNR-------RYLEEALNHE--LARCTRR 425 Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + LS++ D+D+FK+ ND GH GD+V+A + + L+ R GGEE Sbjct: 426 VQPLSVLMLDVDHFKRFNDLHGHSGGDRVLAAIGELLLTQTRGEDICCRYGGEELTIILP 485 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAE-RCHKEPISTIIYRADQA 243 A +A LR IE+ Q+ ++ G S+ IT S G A H + ++ RAD+A Sbjct: 486 EVDLTTARKMAEKLRAGIESLQV-MADGVSLPKITASFGAASFPEHAGNAAQLLRRADEA 544 Query: 244 LYVAKKSGRNRVVCFSD 260 LY AK++GRN+V+ ++ Sbjct: 545 LYRAKQAGRNQVISAAE 561 >gi|221211619|ref|ZP_03584598.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans CGD1] gi|221168980|gb|EEE01448.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans CGD1] Length = 778 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%) Query: 62 EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118 +Y N+ L++ S IT+++L G +G I K L ++QL+ D L+GL N A Sbjct: 290 DYYHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEYDLLTGLANRYAT 348 Query: 119 IS------SLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 + S+ S +L ++F D+D FK +ND GH GD V+ + +L G + Sbjct: 349 LRGLRNDVSMPSSLSRLGLLFIDLDNFKTVNDTLGHNAGDIVLQMTASRLSDAVGDEGTL 408 Query: 173 GRLGGEEFAAAALGSS-EQEAAILAND-LRKIIENSQINISSGPSIHITISAGIA-ERCH 229 R+GG+EF G E+ A LA +R E + G S + S GIA Sbjct: 409 ARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFAEPFDVR---GSSFVLHASIGIALHTVA 465 Query: 230 KEPISTIIYRADQALYVAKKSGRN 253 E ++ +AD A+Y AK +G+N Sbjct: 466 NESEIDLLKKADLAMYSAKDAGKN 489 >gi|86749480|ref|YP_485976.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] gi|86572508|gb|ABD07065.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] Length = 313 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 20/175 (11%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+GL N + F + ++ ++V D+D FK +ND GH GD Sbjct: 138 LRQQAETDPLTGLANRTIFQVRYREVVDDSLNHGFASALVLIDLDGFKDLNDTHGHLAGD 197 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDL----RKIIENS 206 + ++ +L F VGRLGG+EFA A + + A +L L R + N Sbjct: 198 ACLCEVAQRLRRAFHNAGLVGRLGGDEFAIILRAPTAPARIAEVLQQTLVMLSRPMFWNG 257 Query: 207 -QINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 +I +S+ +I A + R H+ I+ + AD ALY AK +GRNRV D Sbjct: 258 LRIEVSA------SIGAALVGRPHRRRIADLFAEADVALYRAKAAGRNRVHLVGD 306 >gi|24375887|ref|NP_719930.1| GGDEF family protein [Shewanella oneidensis MR-1] gi|24350860|gb|AAN57374.1|AE015874_1 GGDEF family protein [Shewanella oneidensis MR-1] Length = 344 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 16/175 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 EL + NR+ +LS D L+ + N F L N LS++ DID+FK ND Sbjct: 161 ELAEANNRLEKLSNTDGLTNIGNRRLFDQMLQKEWSRGQRNNTPLSLIMLDIDHFKLFND 220 Query: 145 NFGHPVGDKVIAFLSDQLVVV-FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 ++GH GD + L++ L V R GGEEF + Q A A + ++I Sbjct: 221 HYGHLAGDDCLKMLANGLSQSGRRAGELVARYGGEEFVILLPNTDLQTALDTAKHVHQLI 280 Query: 204 ENSQI-NISSGPSIHITISAGIAERC----HKEPISTIIYRADQALYVAKKSGRN 253 ++ I +I + I +T+S G+A C K ++++AD ALY+AK +GRN Sbjct: 281 QSLAIPHIKTNLGI-VTVSVGVA--CLLPSDKHNALELVHQADTALYLAKSAGRN 332 >gi|21231360|ref|NP_637277.1| GGDEF family protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768587|ref|YP_243349.1| GGDEF family protein [Xanthomonas campestris pv. campestris str. 8004] gi|21113022|gb|AAM41201.1| GGDEF family protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573919|gb|AAY49329.1| GGDEF family protein [Xanthomonas campestris pv. campestris str. 8004] Length = 987 Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 107 DCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GLLN S + ++ S L++V D+D+FK +ND GH VGD V+A + Sbjct: 823 DALTGLLNRSGVLEAMAEELQQCASAGHPLAVVLIDLDHFKLVNDEHGHLVGDAVLAQVG 882 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L VGR GGEE G ++Q L + + I + + + +T Sbjct: 883 ARLTNCLRDSDKVGRYGGEELLLLLPGMTQQSQHRL-RAIHEAIGATPYEVGIARPLRVT 941 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 S G+A + T++ RAD+ALY AK GRNR+ Sbjct: 942 CSVGVAWFRSGDSTPTLLARADEALYRAKGQGRNRI 977 >gi|329912810|ref|ZP_08275818.1| putative transmembrane protein [Oxalobacteraceae bacterium IMCC9480] gi|327545522|gb|EGF30714.1| putative transmembrane protein [Oxalobacteraceae bacterium IMCC9480] Length = 657 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 17/168 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPV 150 N++ L+R D L+GL N + F L + ++++F DID+FK IND GH Sbjct: 489 NQLRVLARHDTLTGLPNRNQFDEKLAEAMARSRRSGHAMALMFLDIDHFKSINDTLGHHS 548 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKIIE--NS 206 GD+V+ + +L+ V RL G+EF L E+ + + A KII ++ Sbjct: 549 GDEVLCEFARRLLHSVRQTDTVSRLAGDEFVIILEGLQLPEESSKVAA----KIISAMST 604 Query: 207 QINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 +I P I+ S GIA + + S ++ RAD+ALY AK +GRN Sbjct: 605 DFDILGVPR-RISTSIGIAVGKINDNNGSALLRRADEALYAAKAAGRN 651 >gi|262173739|ref|ZP_06041416.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio mimicus MB-451] gi|261891097|gb|EEY37084.1| extracellular solute-binding protein family 3/GGDEF domain protein [Vibrio mimicus MB-451] Length = 412 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 23/170 (13%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 D L+ + A L +K ++ D+D+FK+ ND +GH GD V+ ++ +L ++ Sbjct: 241 DPLTQIPGRQALDQDLKHIGKKFTLAMLDVDHFKKFNDTYGHDTGDDVLKLVASRLRLIE 300 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---NISSGPS-------- 215 G V R GGEEF+ E LR+ IE+ ++ N S P Sbjct: 301 GKAR-VYRYGGEEFSIIYRNKLADEVLPFIEALRQDIESYELVIRNSSKRPKSDAEGAKK 359 Query: 216 ---------IHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 + ITIS G+ + + H+ P + + AD ALY AK++GRN V Sbjct: 360 RTRKSNSDIVTITISIGVCDSQLHRNP-NEALKAADAALYKAKQAGRNCV 408 >gi|255093357|ref|ZP_05322835.1| putative signaling protein [Clostridium difficile CIP 107932] Length = 427 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 10/131 (7%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 D+DYFK+ ND +GH GD + ++ + MF+ R GGEEF ++ +++ I Sbjct: 304 DVDYFKEYNDTYGHYNGDIALKNITIIIKKYLKKDMFMIRYGGEEFLILSVCKDYKKSKI 363 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGR 252 L +I++ N ++T+S GI + C I II AD+ALY AK+SGR Sbjct: 364 FGRKLCRIVKKFLNN-------NLTVSIGI-DTCKNSSIDIREIIENADKALYKAKESGR 415 Query: 253 NRVVCFSDIEN 263 NR + + D +N Sbjct: 416 NRCLHYHDFKN 426 >gi|152970994|ref|YP_001336103.1| hypothetical protein KPN_02455 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955843|gb|ABR77873.1| hypothetical protein KPN_02455 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 595 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + R+ + D L+G+ N +F ++ + Y ++ FD+D FK +N Sbjct: 172 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVN 231 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GDK++ L+ +L T + RLGG+EFA + +E+ A AN +R+ I Sbjct: 232 DTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALERANIIREKI 291 Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 ++QINI + I I IS G E + +Y+ AD ALY AKK G V Sbjct: 292 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 342 Query: 257 CF 258 F Sbjct: 343 IF 344 >gi|197116670|ref|YP_002137097.1| diguanylate cyclase [Geobacter bemidjiensis Bem] gi|197086030|gb|ACH37301.1| diguanylate cyclase [Geobacter bemidjiensis Bem] Length = 408 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 33/210 (15%) Query: 77 TISLLLGYISGSILKELFISYNRISQLSR--------------IDCLSGLLNHSAF---- 118 T SL LG ++G ++ ISY + + +R D L+G N Sbjct: 202 TASLALGALAGILVVVFGISYFLVRKGTREIKEIQEVLKKQTMTDALTGTFNKGQIELLA 261 Query: 119 ---ISSLGSYNEK------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTP 169 + NEK L + DID FK++NDN+GH GD ++ + ++ Sbjct: 262 CKEFARCVRRNEKGLGDADLGFIMIDIDRFKEVNDNYGHLAGDVLLQQFAARIARSLRNY 321 Query: 170 MFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCH 229 +GR GGEEF GS ++ +A + ++ + + G I +T S G A Sbjct: 322 DSIGRFGGEEFLVMLPGSDLEQTRAVAQKIWSLL-REEPYLVDGREIDLTASLGAA--AV 378 Query: 230 KEPISTIIY---RADQALYVAKKSGRNRVV 256 KE + +++ RADQ LY AK +GR+RVV Sbjct: 379 KEGDADLLHVLKRADQRLYAAKSAGRDRVV 408 >gi|197119693|ref|YP_002140120.1| PAS domain-containing sensor diguanylate cyclase [Geobacter bemidjiensis Bem] gi|197089053|gb|ACH40324.1| sensor diguanylate cyclase, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 297 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 12/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 ++ + ++ Q +D L+G+ N SL S + ++F D+D+FK +ND Sbjct: 125 QILAALEQLKQDVLVDPLTGVGNRRLADMSLESRLHDWQTHRRPFGVLFMDVDHFKSVND 184 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 +GH GD+V+ L + F V R GGEEF A A +A +R + Sbjct: 185 RYGHKTGDEVLRMLGKTISNTFRKVDTVARWGGEEFVAILPAMRLPALASIAERIRSAVA 244 Query: 205 NSQINISSGPSIHITISAG--IAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 S + + G + +T+S G IAE + +II RAD +Y +K GRN V Sbjct: 245 GSFL-MEDGQRVGVTLSIGGTIAE--TGDNAESIISRADAQMYRSKAGGRNLVT 295 >gi|95930341|ref|ZP_01313078.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95133593|gb|EAT15255.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 319 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 14/173 (8%) Query: 103 LSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVI 155 LS D L+ L N + +L E S++ D+D+FK IND +GH GD V+ Sbjct: 141 LSSTDSLTQLYNRRVLMRTLRKEFQRQVRTEESFSLLMVDVDHFKNINDRYGHLNGDTVL 200 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG-P 214 L+ L R GGEEFA ++ + A +A LR + ++ S Sbjct: 201 INLARMLRSYLRPYDVPTRFGGEEFALVLPNTNMECAREVAERLR--LAAKELRFSGEIR 258 Query: 215 SIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRNRVVCFSDIENN 264 + ITIS G+A C + + + ++ D ALY AK +GR++VVC +++ N Sbjct: 259 DLEITISIGVAT-CPADGVESEDDLLKLTDDALYAAKSAGRDQVVCATELPTN 310 >gi|288942758|ref|YP_003444998.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Allochromatium vinosum DSM 180] gi|288898130|gb|ADC63966.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Allochromatium vinosum DSM 180] Length = 1114 Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N + F +LG E ++ DID+FK IND GH GD ++ ++ Sbjct: 695 DALTELPNRARFREALGEVIENCRRTGQGFAVALMDIDHFKTINDTLGHDKGDVLLCAVA 754 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPS-IHI 218 ++ P V RLGG+EFA ++ A L + +I+E + I G I Sbjct: 755 KRIRAELPEPGLVARLGGDEFALLLPDITDTAVASLWAE--RIVEALRRAIVVGEDRFSI 812 Query: 219 TISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF-SDIE 262 T S G+A ++ +AD ALY AK++GRNR F SD+E Sbjct: 813 TSSLGLAMGGPDSEPGELLKQADLALYHAKEAGRNRASHFDSDLE 857 >gi|315126495|ref|YP_004068498.1| GGDEF domain membrane protein [Pseudoalteromonas sp. SM9913] gi|315015009|gb|ADT68347.1| putative GGDEF domain membrane protein [Pseudoalteromonas sp. SM9913] Length = 225 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 104/219 (47%), Gaps = 24/219 (10%) Query: 48 IFLFYIGLTPFYGLEYILVENLSLV-IISITISLLLGYISGSILKELFISYNRISQLSRI 106 + LFY+ + + L+ NLSL II +S + + S +E I L+ Sbjct: 5 LLLFYVIDKRLVEINFKLIINLSLTYIIVWGVSHVFESMRASNQEE-------IINLALR 57 Query: 107 DCLSGLLNHSAFISSLGS---YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLV 163 D L+ N AF S + ++ D+D+FK++ND +GH GD V+ L+ QL Sbjct: 58 DSLTQAYNRRAFKSHFHNHIDFSNPYCFALADLDFFKKVNDKYGHDAGDAVLVQLT-QLF 116 Query: 164 VVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAND-LRKIIENSQINISSGPSIHITISA 222 V R GGEEF + + E AI+ D LR I+N Q +++ITIS Sbjct: 117 KKHLGDEHVYRFGGEEFTLVV--NDDIEVAIITMDKLRTDIQNHQFTYMQ-STLNITISI 173 Query: 223 GIA-----ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 G+ E H +S I+ AD LY+AK +GRN VV Sbjct: 174 GLVGIDAHEHTH---LSEILRLADNYLYLAKNNGRNCVV 209 >gi|254507527|ref|ZP_05119661.1| PAS fold family protein [Vibrio parahaemolyticus 16] gi|219549597|gb|EED26588.1| PAS fold family protein [Vibrio parahaemolyticus 16] Length = 692 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 17/170 (10%) Query: 104 SRIDCLSGLLNHSAFISSLGSY---NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 + ID L+GL N F L + L +++ DID FK IND+ GH +GDKVI +S Sbjct: 266 AHIDSLTGLYNRFGFTKRLEQLIQNDTPLIMLYLDIDNFKNINDSLGHHIGDKVIKEVSS 325 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP------ 214 +L + +G LGG+EF L E E +A L + I I++ + P Sbjct: 326 RLKRLLPQQAVLGHLGGDEF---GLILPEPENNRMAEMLSERI----ISLINQPFDLHHF 378 Query: 215 SIHITISAG-IAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 S + S G +A ++ AD A+Y AK GRNR++ F+D N Sbjct: 379 SKRLACSIGSVAYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMN 428 >gi|153010670|ref|YP_001371884.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC 49188] gi|151562558|gb|ABS16055.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC 49188] Length = 656 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 21/203 (10%) Query: 68 NLSLVIISITISLL-LGYISGSIL-KELFISYNRIS----QL-------SRIDCLSGLLN 114 +L +I++ + L LG G++L + FI +R+ QL S+ D L+GL N Sbjct: 179 DLQYGVIAVAVVLFWLGLTRGALLGQNRFIQTSRLKHEAKQLADEMALKSQEDPLTGLFN 238 Query: 115 HSAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMF 171 +S+ Y K ++ D+D FK +ND +GH VGD ++ ++ ++ V Sbjct: 239 RRGLETSIRLYPVKDGPFIVMLIDLDGFKSVNDTYGHKVGDDLLVAIAQRIRQVSPERSV 298 Query: 172 VGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHK 230 + R+GG+EF A S++ EA ++A +II + + S+ I GI Sbjct: 299 LARIGGDEFVLAYPEPSAKIEAGLVAA---RIIGSLTAHYEGILSVEIGACVGICRLERL 355 Query: 231 EPISTIIYRADQALYVAKKSGRN 253 +P+ ++ RAD ALY AKK GRN Sbjct: 356 DPVEMLL-RADFALYAAKKRGRN 377 >gi|126643303|ref|YP_001086287.1| putative GGDEF family protein [Acinetobacter baumannii ATCC 17978] gi|126389187|gb|ABO13685.1| putative GGDEF family protein [Acinetobacter baumannii ATCC 17978] Length = 568 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 ++ ++ D L+G+ N S ++ + SY +K S ++ DID FK +ND +GH VGD Sbjct: 405 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKHVNDQYGHIVGD 464 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 +VI ++DQL + R GG+EF +A +LA +R I +I++S Sbjct: 465 QVIRRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSG 524 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +H+++S G A ++ AD++L AK GRN V Sbjct: 525 TQEKLHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 566 >gi|54297266|ref|YP_123635.1| hypothetical protein lpp1311 [Legionella pneumophila str. Paris] gi|53751051|emb|CAH12462.1| hypothetical protein lpp1311 [Legionella pneumophila str. Paris] Length = 792 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R++ + D L+GL N +A L N LS++F DID FK IND+ GH G Sbjct: 352 RLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAG 411 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ S +L V R GG+EF + + ++ ++A ++ K + I + Sbjct: 412 DILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILVAQNILKAVAQP-IKLP 470 Query: 212 SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253 + I +T S GI+ K+ I ST++ +D A+Y+AKK GRN Sbjct: 471 TQEVI-VTTSIGIS-LFPKDGIDASTLLKNSDTAMYLAKKEGRN 512 >gi|54295250|ref|YP_127665.1| hypothetical protein lpl2333 [Legionella pneumophila str. Lens] gi|53755082|emb|CAH16573.1| hypothetical protein lpl2333 [Legionella pneumophila str. Lens] Length = 565 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 87/205 (42%), Gaps = 14/205 (6%) Query: 62 EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN----HSA 117 E I EN ++ S+ + IS +L+E + S D L+GL N + A Sbjct: 364 EEINKENNQEILASMMAEQIALGISNIMLRET------LRNQSLRDVLTGLYNRRYLNEA 417 Query: 118 FISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 L K L+++ DID+FKQ ND FGH GD VI ++ L V R Sbjct: 418 LDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACR 477 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233 GGEEF + A A + + + ITIS G+ H + Sbjct: 478 YGGEEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDM 537 Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258 +I AD ALY AK SGRN+ V + Sbjct: 538 QDLITAADNALYEAKNSGRNKTVLY 562 >gi|329298612|ref|ZP_08255948.1| putative diguanylate cyclase YedQ [Plautia stali symbiont] Length = 145 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 12/137 (8%) Query: 126 NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAAL 185 + L+++ DID+FK++ND++GH GD+ + ++ + GR+GGEEF Sbjct: 10 QQPLAVIQLDIDHFKKVNDSWGHHAGDQALMRVAGVIKHTLRPYDVAGRIGGEEFCIVLP 69 Query: 186 GSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERC-------HKEPISTIIY 238 ++ +A +A +R + I +++ + +T+SAG++ C H E + + Sbjct: 70 HTTRADAQGVAERIRSRLAAKTILVNASTTFSVTLSAGVS--CSTEQGSYHAESLQAV-- 125 Query: 239 RADQALYVAKKSGRNRV 255 AD+ LY+AK GRNRV Sbjct: 126 -ADRRLYLAKSGGRNRV 141 >gi|330000638|ref|ZP_08303776.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] gi|328537927|gb|EGF64111.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3] Length = 595 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 23/182 (12%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 ++L + R+ + D L+G+ N +F ++ + Y ++ FD+D FK +N Sbjct: 172 EKLQVQNRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVN 231 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D GH GDK++ L+ +L T + RLGG+EFA + +E+ A AN +R+ I Sbjct: 232 DTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALERANVIREKI 291 Query: 204 E------NSQINISSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNRVV 256 ++QINI + I I IS G E + +Y+ AD ALY AKK G V Sbjct: 292 SQPYQIYDAQINIDA--CIGIVISDG-------ESRTDYLYKCADLALYEAKKEGSGHVQ 342 Query: 257 CF 258 F Sbjct: 343 IF 344 >gi|307611265|emb|CBX00924.1| hypothetical protein LPW_26251 [Legionella pneumophila 130b] Length = 552 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 87/205 (42%), Gaps = 14/205 (6%) Query: 62 EYILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLN----HSA 117 E I EN ++ S+ + IS +L+E + S D L+GL N + A Sbjct: 351 EEINKENNQEILASMMAEQIALGISNIMLRET------LRNQSLRDVLTGLYNRRYLNEA 404 Query: 118 FISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 L K L+++ DID+FKQ ND FGH GD VI ++ L V R Sbjct: 405 LDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACR 464 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPI 233 GGEEF + A A + + + ITIS G+ H + Sbjct: 465 YGGEEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDM 524 Query: 234 STIIYRADQALYVAKKSGRNRVVCF 258 +I AD ALY AK SGRN+ V + Sbjct: 525 QDLITAADNALYEAKNSGRNKTVLY 549 >gi|289208212|ref|YP_003460278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] gi|288943843|gb|ADC71542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] Length = 842 Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 18/175 (10%) Query: 99 RISQLSRIDCLSGLLN----HSAFISSLG---SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI + D L+GL N H S+ + +++++ D+D+FK IND FGH G Sbjct: 409 RIQHQATHDSLTGLPNRWLLHDRLAQSIAHASRHEHRIAVMLLDLDHFKMINDTFGHHEG 468 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFA------AAALGSSEQEAAILANDLRKIIEN 205 D+++ ++ +L GT +GR GG+EF L E+ ILA R Sbjct: 469 DELLREVAQRLKDAAGTDATIGRFGGDEFMILLPEITDELQVGERGQEILAQFDRPFHTG 528 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 SS S+ I + A +T++ AD A+Y AK+SGRN +S+ Sbjct: 529 PTRQFSSSASLGIALFPQDARDA-----NTLVRYADMAMYEAKRSGRNTYAFYSE 578 >gi|254457790|ref|ZP_05071218.1| two-component response regulator [Campylobacterales bacterium GD 1] gi|207086582|gb|EDZ63866.1| two-component response regulator [Campylobacterales bacterium GD 1] Length = 427 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 97 YNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHP 149 + + L+ D L+G N F S + ++++++ DID FK +ND +GH Sbjct: 259 FKQTKDLANKDFLTGSYNRRYFFESSKAILNKNQRKDKEVAVATLDIDLFKNVNDTYGHD 318 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 VGD I ++ L T V R GGEE+ S ++ L +R EN++I Sbjct: 319 VGDVAIQEIAIILDKTLRTSDLVARFGGEEYCILLEDISLEDTKHLFEKIRSNFENNEIK 378 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + S+ T+S GIA I+ ++ +D+ALY AK +GRN+V+ Sbjct: 379 VDD-ISLKYTVSLGIA-YGKSIDINALLKVSDEALYEAKDTGRNKVI 423 >gi|207724828|ref|YP_002255225.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] gi|206590053|emb|CAQ37014.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] Length = 914 Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 11/165 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVG 151 R+ L+ D L+GL N S FI+ L S E+ L++ F D+D FK +ND GH G Sbjct: 472 RLRHLASHDALTGLTNRSFFIAHLDSAIERARDESRELALFFLDLDRFKSVNDTAGHACG 531 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSE-QEAAILANDLRKIIENSQINI 210 D ++ + +L G + RLGG+EF E A LA L + + Sbjct: 532 DTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQRVEGMRIAQLAERLLAAMREPFDTV 591 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRNR 254 + ++ +S G+A H T + R AD A+Y AK++GRNR Sbjct: 592 NG--RYYLGVSIGVALYPHDGISGTDLLRSADAAMYRAKQNGRNR 634 >gi|170697268|ref|ZP_02888362.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria IOP40-10] gi|170137888|gb|EDT06122.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria IOP40-10] Length = 667 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 17/186 (9%) Query: 86 SGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS--------YNEKLSIVFFDID 137 SG + E + R+++L+ D L+GL N A +G+ ++ I+F D+D Sbjct: 218 SGIDVTEERNAQQRLTELANTDMLTGLPNRHAISERIGAALAADRTDMRGQVGILFLDLD 277 Query: 138 YFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSS---EQEAA 193 FK++ND++GH GD+++ +S + + + RLGG+EF G+ E A Sbjct: 278 NFKRVNDHYGHITGDRLLQDVSTIISGCLPSGATLARLGGDEFLVLFEHGTRPLLEATAQ 337 Query: 194 ILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 I+ LR I + + + SI I + H + + T+I AD A+YVAK+ G++ Sbjct: 338 IILERLRTPIHLGLMEVYTSCSIGIAMYP-----QHGDSLETLIRSADTAMYVAKEEGKH 392 Query: 254 RVVCFS 259 FS Sbjct: 393 TYRVFS 398 >gi|150020166|ref|YP_001305520.1| response regulator receiver modulated diguanylate cyclase [Thermosipho melanesiensis BI429] gi|149792687|gb|ABR30135.1| response regulator receiver modulated diguanylate cyclase [Thermosipho melanesiensis BI429] Length = 463 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 16/174 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQIND 144 +L YN + D L+ + N + + L S +K LS+ DID FK++ND Sbjct: 292 KLLNEYNLSKSKTEFDELTKVYNRAFIMEKLKELLQLSLRQKIPLSVAMIDIDDFKKVND 351 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKII 203 +GH GD+V+ ++ + +VGR GGEEF G S Q +L L K+ Sbjct: 352 TYGHLKGDEVLKKVAQIIRDNLRESDYVGRYGGEEFLVILPGISCNQAKKVLERILDKV- 410 Query: 204 ENSQINISSGPSIHITISAGIAERCHKEPISTI--IYRADQALYVAKKSGRNRV 255 + S ++T SAG+ C K S + I RAD+ LY+AKK G+N+V Sbjct: 411 --RNTDWKSLGVNNVTFSAGL---CCKPEKSMLGFIKRADKNLYIAKKRGKNQV 459 >gi|146283106|ref|YP_001173259.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501] gi|145571311|gb|ABP80417.1| GGDEF domain protein [Pseudomonas stutzeri A1501] Length = 396 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 90/177 (50%), Gaps = 13/177 (7%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISS-------LGSYNEKLSIVFFDI 136 +++ ++++E R + LS D L+G+ N +FI + + E ++++ D+ Sbjct: 200 FVTLAMVRERAEQQYRHASLS--DPLTGIGNRRSFIDAGQALLQRCRARGEPVTLLLCDL 257 Query: 137 DYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILA 196 D+FK++ND FGH GD+ + + GR+GGEEF A L ++ A++ Sbjct: 258 DFFKRLNDTFGHQAGDRALIDFGQVIARRMRRQDVFGRIGGEEF-ACLLADAD---ALVG 313 Query: 197 NDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 ++ + I + +++S G+A + + ++ +AD+ALY AK +GRN Sbjct: 314 REVAERIRGEFAAMPFAEQGQLSVSIGVATTTSRYELDELMAQADRALYAAKAAGRN 370 >gi|90022647|ref|YP_528474.1| response regulator receiver modulated diguanylate cyclase [Saccharophagus degradans 2-40] gi|89952247|gb|ABD82262.1| response regulator receiver modulated diguanylate cyclase [Saccharophagus degradans 2-40] Length = 303 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 11/174 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQIND 144 +L + + +L+ D L+ +LN F + Y ++ ++ DID+FK ND Sbjct: 128 QLARANKELMKLANHDGLTKILNRRGFDEVMDRYWRQARRDQSEIGLLLIDIDHFKAYND 187 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAND--LRK 201 +GH GD+ ++ ++ + P+ R GGEEF A L + E A+ D L Sbjct: 188 TYGHVRGDETLSAVAHSIEKALMRPIDIAARYGGEEF-AVLLPCTGMEGAMTVGDRILEA 246 Query: 202 IIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 I + + +++S +T+S G+A +I RAD ALY AK+ GRNRV Sbjct: 247 IRDEAIPHLTSPVKSFLTVSIGVALSSGLASAEDLIKRADAALYQAKERGRNRV 300 >gi|311696619|gb|ADP99492.1| sensory box/GGDEF/GAF/EAL domain protein [marine bacterium HP15] Length = 788 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 17/171 (9%) Query: 99 RISQLSRIDCLSGLLNHSA----FISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVG 151 R+ + + D L+GL N F L N + +S+ F D+D FK IND GH VG Sbjct: 352 RLEKAANYDSLTGLPNRRRLTEIFTQELHEANLRQGTVSLCFIDLDGFKGINDQQGHAVG 411 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLRKI-IENSQI 208 D V+ +S++L +GRLGG+EF A + S + IL R I +N+ + Sbjct: 412 DAVLKIISERLKATIRQHDAIGRLGGDEFVAVLRDVEDSTVYSRILEAIRRPISYQNAVM 471 Query: 209 NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S+ S+ +T+ AE +P T++ ADQA+Y AK SG++ F Sbjct: 472 KLSA--SMGVTVYPDDAE----DP-DTLLRHADQAMYAAKDSGKDTYSLFD 515 >gi|289678524|ref|ZP_06499414.1| GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 149 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 27/147 (18%) Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS---DQLVVVFGTPMFVGRLGGEEFAAA 183 E ++I+ DID+FK NDN+GHP GD + L Q G F R GGEE Sbjct: 16 ENVAIILLDIDHFKSYNDNYGHPQGDTCLRLLCQKVQQSAHEHGAVAF--RFGGEEVLVL 73 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISS--------GPSIHITISAGIAERCHKEPIST 235 +G+ Q R++ E Q +++ G + +T+S G+A C P+++ Sbjct: 74 MIGNPVQ--------AREVAEALQTSVAELKLPHPVLGENALVTVSLGVA--CATAPMTS 123 Query: 236 ---IIYRADQALYVAKKSGRNRVVCFS 259 +I AD ALY AK++GRN VCF+ Sbjct: 124 AENLIGAADNALYAAKRAGRN-CVCFA 149 >gi|291615020|ref|YP_003525177.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans lithotrophicus ES-1] gi|291585132|gb|ADE12790.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans lithotrophicus ES-1] Length = 961 Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 31/174 (17%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +S ++ D L+G+ N LG + L+I + D+D FK +ND +GH GD Sbjct: 792 LSHVANHDALTGIPNRRLLSDRLGQAIAHAQRSGKTLAICYIDLDGFKDVNDRYGHETGD 851 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 ++ ++ +L V + RLGG+EF +L NDL + +E Q+ Sbjct: 852 MLLVDITRRLQDVLRAGDTLARLGGDEF------------VVLFNDLSQELECIQVLERI 899 Query: 213 GPSI---------HITISAGIAERCH---KEPISTIIYRADQALYVAKKSGRNR 254 +I I +SA + C+ E T++ ADQA+YVAKK+G+NR Sbjct: 900 VQTIAMPVWFEERSIAVSASVGVTCYPADDEEGDTLLRHADQAMYVAKKAGKNR 953 >gi|213159035|ref|YP_002321033.1| GGDEF family protein [Acinetobacter baumannii AB0057] gi|215481944|ref|YP_002324126.1| WspR [Acinetobacter baumannii AB307-0294] gi|301345198|ref|ZP_07225939.1| WspR [Acinetobacter baumannii AB056] gi|301510689|ref|ZP_07235926.1| WspR [Acinetobacter baumannii AB058] gi|301595803|ref|ZP_07240811.1| WspR [Acinetobacter baumannii AB059] gi|213058195|gb|ACJ43097.1| GGDEF family protein [Acinetobacter baumannii AB0057] gi|213989027|gb|ACJ59326.1| WspR [Acinetobacter baumannii AB307-0294] Length = 568 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 ++ ++ D L+G+ N S ++ + SY +K S ++ DID FK +ND +GH VGD Sbjct: 405 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKHVNDQYGHIVGD 464 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 +VI ++DQL + R GG+EF +A +LA +R I +I++S Sbjct: 465 QVIRRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSG 524 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +H+++S G A ++ AD++L AK GRN V Sbjct: 525 TKEKLHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 566 >gi|254447061|ref|ZP_05060528.1| response regulator receiver protein [gamma proteobacterium HTCC5015] gi|198263200|gb|EDY87478.1| response regulator receiver protein [gamma proteobacterium HTCC5015] Length = 430 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 19/174 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL------GSYNEK-LSIVFFDIDYFKQINDNFGHPV 150 +++ ++ D L+GL N L G+ ++ +S++ D+D FK ND++GH Sbjct: 256 DQLQHMATTDPLTGLYNRREMERRLQEEWRRGARSDHFISVMLIDVDDFKAYNDHYGHQA 315 Query: 151 GDKVIAFLSDQLVVVFGTPM-----FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GD + QL +FG V R GGEEF + + A LA L + + Sbjct: 316 GDSCLT----QLGTLFGGAFQRASDCVARYGGEEFIVLLPETDAEAAQKLAEKLCHKVFD 371 Query: 206 SQI---NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 +I + + I ++I A A+ H+ +I AD+ALY AK+ GRN+VV Sbjct: 372 QRIPHTHARAADRITVSIGAATAQSHHEGHYEHLIKAADEALYQAKEQGRNQVV 425 >gi|209544676|ref|YP_002276905.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Gluconacetobacter diazotrophicus PAl 5] gi|209532353|gb|ACI52290.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gluconacetobacter diazotrophicus PAl 5] Length = 974 Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 11/172 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 RI+ L+ D L+GL N + F +L S ++++++ D+D FK+IND GH VG Sbjct: 535 RITYLAHHDSLTGLANRAWFTEALDRALTLAASGTQRVAVIGIDLDKFKEINDQHGHAVG 594 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D+V+ L+ ++ V V RLGG+EFAAA E L + + SQ Sbjct: 595 DQVLVTLAARIRDVLEDDELVARLGGDEFAAAKRFDDMAELNAFIGRLEECL--SQPIGV 652 Query: 212 SGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 G + S G++ E + ++ AD A+Y AK + R VCF + E Sbjct: 653 DGFELRPNASIGVSLYPRDAETVEALMGDADLAMYRAKGALREH-VCFYEAE 703 >gi|299068720|emb|CBJ39958.1| putative signal transduction protein eal-ggdef domains [Ralstonia solanacearum CMR15] Length = 906 Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 14/172 (8%) Query: 96 SYNRISQLSRIDCLSGLLNHSAFISSLGSY-----NEKLSIVFFDIDYFKQINDNFGHPV 150 +Y ++ L D L+GL N +AFI L + + ++++ +D+FK +N+ GH + Sbjct: 465 TYEQLRLLETKDSLTGLPNRAAFIERLDARLALPSTGQAALLYIGLDHFKTVNEAMGHHI 524 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 G++V+ + ++ G + RLGG++F A E A L +++ ++ Sbjct: 525 GNQVLNVAAQRIRADVGQRALLARLGGDQFCVAI------EVPDRAETLAQLVLDALAKP 578 Query: 211 SSGPSIHITISAGIAERCHKEPIS---TIIYRADQALYVAKKSGRNRVVCFS 259 SG + +SA I E S T++ RA+ A+Y AK++GRNR+ +S Sbjct: 579 FSGGEREVHLSASIGVAMFPEDGSDAATLVSRAEAAMYRAKENGRNRMARYS 630 >gi|300117863|ref|ZP_07055630.1| sensory box/GGDEF family protein [Bacillus cereus SJ1] gi|298724727|gb|EFI65402.1| sensory box/GGDEF family protein [Bacillus cereus SJ1] Length = 735 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 23/182 (12%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQIND 144 L+ ++ L+ D L+GL N F L S N+ ++++F D+D FK+IND Sbjct: 296 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAND-VAVMFLDLDRFKKIND 354 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS-SEQEAAILANDLRKI- 202 GH VGD ++ ++ +L + V R GG+EF SE+ AA +A + I Sbjct: 355 RLGHGVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNIL 414 Query: 203 -----IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 I++ +++I+ PSI I + ++ ++ AD A+Y AK +G+NR V Sbjct: 415 NKPFFIKDEELSIT--PSIGIAMYPDCGTN-----VTELMKNADMAMYRAKANGKNRFVF 467 Query: 258 FS 259 FS Sbjct: 468 FS 469 >gi|261253752|ref|ZP_05946325.1| GGDEF family protein [Vibrio orientalis CIP 102891] gi|260937143|gb|EEX93132.1| GGDEF family protein [Vibrio orientalis CIP 102891] Length = 505 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 88/189 (46%), Gaps = 17/189 (8%) Query: 84 YISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-----LSIVFFDIDY 138 Y + +L + L+ D L+ + N + S E+ +S++ DIDY Sbjct: 320 YRINEVFNQLEAKQKELEWLALHDSLTKVGNRRSLQQYWDSLLEQRDQRHISLLLIDIDY 379 Query: 139 FKQINDNFGHPVGDKVIAFLSDQLVVVFGTPM----FVGRLGGEEFAAAALGSSEQEAAI 194 FK ND++GH GD+V+ ++ LV TP FV R GGEEF S+ + Sbjct: 380 FKPFNDHYGHIEGDRVLQQVASCLV---QTPTQSEKFVARFGGEEFCVVLSSESKIDNQQ 436 Query: 195 LANDLRKIIENSQINISSGP-SIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKS 250 A LR I QI P + IT+S G+A+ C +P + I AD ALY AK Sbjct: 437 EAEWLRASIAELQILHEYSPIAGGITVSIGVAD-CALQPFDELQDIFLVADAALYQAKDL 495 Query: 251 GRNRVVCFS 259 GRN+ V S Sbjct: 496 GRNKFVIHS 504 >gi|254518217|ref|ZP_05130273.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp. 7_2_43FAA] gi|226911966|gb|EEH97167.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp. 7_2_43FAA] Length = 960 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 19/190 (10%) Query: 85 ISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSL------GSYNEKLSIVFF-D 135 ISGSI + E + +I L+ D L+GL N F+ + G NE + + F D Sbjct: 516 ISGSISDITERKKAEEKIETLAFYDQLTGLPNKHMFLDKIDDELLRGLKNEYIGVAFLID 575 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAI 194 ID FK IND GH GD+ + ++ + + + F+ +L G+EF L + + EA Sbjct: 576 IDNFKNINDTLGHDYGDEFLKCIAKEFIKLLDNDEFICKLDGDEFLILMLDVNGKAEAEE 635 Query: 195 LANDLRKIIEN----SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKS 250 +AN + ++ +N + NI + SI I+I A S ++ +D A+Y AK++ Sbjct: 636 MANKILELFKNPFKVKEKNIFTSVSIGISIIPNDARNK-----SELLKNSDIAMYKAKEN 690 Query: 251 GRNRVVCFSD 260 G+NR + + + Sbjct: 691 GKNRYLFYRE 700 >gi|218532674|ref|YP_002423490.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Methylobacterium chloromethanicum CM4] gi|218524977|gb|ACK85562.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Methylobacterium chloromethanicum CM4] Length = 795 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 9/163 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPV 150 ++I L+ D L+GL N ++F L KL+++ D+D FK++ND FGH Sbjct: 359 SQIQFLAHHDALTGLANRTSFSKRLDQEMRAADVGGRKLAVLCLDLDRFKEVNDLFGHAA 418 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ ++ + + RLGG+EFA + EA LA + + + + ++ Sbjct: 419 GDAMLESVAHIVSAELDDSQMMARLGGDEFAVLMPCAGPSEAGRLAERILEALRSGRVE- 477 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + GP I +I + +E + ++ AD ALY AK GR Sbjct: 478 AGGPQIATSIGVALYPDDARE-RAALLSNADTALYRAKSEGRG 519 >gi|119961921|ref|YP_948931.1| response regulator/GGDEF domain-containing protein [Arthrobacter aurescens TC1] gi|119948780|gb|ABM07691.1| response regulator/GGDEF domain protein [Arthrobacter aurescens TC1] Length = 302 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 8/189 (4%) Query: 75 SITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS---- 130 S+ I LL S+ +L + +++ +R D L+ L N LG+ + + Sbjct: 109 SLHIRLLAAQRITSLHADLARYRSALTEQARTDPLTKLHNRLKLAEDLGTLHGGGTPDLD 168 Query: 131 --IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 + D+D FK ND +GH GD + ++ L V R GGEEF Sbjct: 169 YCLAMVDVDNFKSYNDIYGHQAGDAALISIASTLAGEVRKSDGVYRFGGEEFLLLLRDQR 228 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYV 246 +A + +R ++ +I S P +TISAGI+ H+ ++ AD ALY Sbjct: 229 AADARTVMERVRTAVQELRIEHSGDPDGVLTISAGISAFTDGHRAGTEQLLREADLALYA 288 Query: 247 AKKSGRNRV 255 AK SGRNRV Sbjct: 289 AKASGRNRV 297 >gi|126698286|ref|YP_001087183.1| putative signaling protein [Clostridium difficile 630] Length = 837 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 13/165 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150 NR+ ++ D L+ + N +A+I L + N + +++ DIDYFK IND +GH + Sbjct: 674 NRLLDKAQRDSLTNIYN-AAYIRKLTAQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLL 732 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209 GDKV+ ++ L F VGRLGG+EF+ +E I ND+ I I Sbjct: 733 GDKVLIDVAKVLDESFAKNDIVGRLGGDEFSVYINDIINKEELINKCNDVYNHIH--LIK 790 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +G S+ I++ IA+ + + AD ALY +K+ GRNR Sbjct: 791 LPNGESLSISMGVVIAKPGQE--YDELYQIADNALYDSKRQGRNR 833 >gi|307610059|emb|CBW99594.1| hypothetical protein LPW_13641 [Legionella pneumophila 130b] Length = 792 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R++ + D L+GL N +A L N LS++F DID FK IND+ GH G Sbjct: 352 RLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAG 411 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ S +L V R GG+EF + + ++ ++A ++ K + I + Sbjct: 412 DILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILVAQNILKAVAQP-IKLP 470 Query: 212 SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253 + I +T S GI+ K+ I ST++ +D A+Y+AKK GRN Sbjct: 471 TQEVI-VTTSIGIS-LFPKDGIDASTLLKNSDTAMYLAKKEGRN 512 >gi|77458397|ref|YP_347902.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1] gi|77382400|gb|ABA73913.1| putative GGDEF domain membrane protein [Pseudomonas fluorescens Pf0-1] Length = 382 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 13/196 (6%) Query: 68 NLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNE 127 +SLV ++ I L+ ++G+ E + +I++L+ D L+ L N A + Sbjct: 186 QISLVEGAMAIMLIALSMTGT---ERYRREKQIAELAARDPLTALYNRRALEVRAPRLLD 242 Query: 128 KLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA 181 ++S ++ DID FK +ND +GH GD+++ LS+ + V RLGG+EF Sbjct: 243 EVSSARPGALLLIDIDNFKLVNDLYGHTAGDRLLIALSEMIRAVLPNGALAARLGGDEFV 302 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEP--ISTIIYR 239 +S + L + LR+ + + P +T+S G A+ + P ++ +I + Sbjct: 303 MLLGDASHAQIMDLGSALREQFQQMTSQTYTTPQ-AVTLSIG-AKVFDQPPASLAALIEQ 360 Query: 240 ADQALYVAKKSGRNRV 255 D ALY +K+ GRNR+ Sbjct: 361 GDSALYESKRGGRNRI 376 >gi|120555824|ref|YP_960175.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei VT8] gi|120325673|gb|ABM19988.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei VT8] Length = 312 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 13/179 (7%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFIS-------SLGSYNEKLSIVFFDIDYFKQIN 143 ++L ++ + S D L+GL N F + S + LS++ DID+FKQ N Sbjct: 134 EKLIALQKKLEEYSFKDGLTGLSNRRMFDTVIEDTWLSAQRNRQPLSLILLDIDHFKQYN 193 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAND--LR 200 D +GH GD+ + +S L P FVGR GGEEF L S+ +AA+ + + Sbjct: 194 DLYGHIQGDECLRRVSSVLAKAIKRPKDFVGRFGGEEF-VIVLPESDADAAVRVAERCIS 252 Query: 201 KIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRADQALYVAKKSGRNRVVC 257 +++ + + S +T+S GI + ++ + D LY AK +GRNR+V Sbjct: 253 ELLREQIPHADNSASQLVTLSMGIGTIIPSQNDSLTEFLATVDGRLYEAKDAGRNRIVA 311 >gi|109898406|ref|YP_661661.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109700687|gb|ABG40607.1| response regulator receiver modulated diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 306 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 100 ISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L+ +D L+G+ N + ++ N+ +S++ D+D FKQ ND +GH V D Sbjct: 141 LKKLAYLDGLTGVYNRRYLDEYLAKQVAQAKRTNQPISLLMVDVDLFKQYNDEYGHLVAD 200 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 + ++ + P R GGEEF + E+ A +A +++ ++ +I+ Sbjct: 201 DQLKLVALTVRSSLNRPTDIAARYGGEEFTCVLPNTDERGAKHVAKKIQQAVDQLKISHR 260 Query: 212 SGPSIHITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVV 256 P +T+S G++ + S+ +I AD+ LY AK +GRN+VV Sbjct: 261 LSPHQILTVSIGVSTILPDQNYSSDLISIADKNLYKAKHTGRNKVV 306 >gi|315127612|ref|YP_004069615.1| response regulator/GGDEF domain protein [Pseudoalteromonas sp. SM9913] gi|315016126|gb|ADT69464.1| response regulator/GGDEF domain protein [Pseudoalteromonas sp. SM9913] Length = 410 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 81/169 (47%), Gaps = 20/169 (11%) Query: 100 ISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 I + + D L+ L N F SL + + + + DID+FK IND +GH GD Sbjct: 250 IKRQANTDYLTKLPNRRYFFEEANKSLKQFKKAKAPAMLAMLDIDHFKAINDTYGHDAGD 309 Query: 153 KVIAFLSDQLVVVFGT---PMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 +V+ L+ V F V RLGGEEFA +EQEA R IE + Sbjct: 310 EVLKGLA----VCFNKYFENQLVARLGGEEFAVFFTELTEQEALKRLESFRLFIELNSHE 365 Query: 210 ISSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRVV 256 S I T+S G + H E I ++ +AD LY AK+SGRN+VV Sbjct: 366 FSQA-QIKFTLSIGFS---HSETYQIDELLKQADLKLYKAKESGRNKVV 410 >gi|170722389|ref|YP_001750077.1| diguanylate cyclase [Pseudomonas putida W619] gi|169760392|gb|ACA73708.1| diguanylate cyclase [Pseudomonas putida W619] Length = 386 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 15/201 (7%) Query: 65 LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLG- 123 L +++S+ I ++T+ + Y G +L S +R+ L+ D L+G N A + Sbjct: 182 LKQSISVAIGTVTVMM---YSIGLVLMAKERSESRLKHLALRDVLTGTYNRRAILERFAV 238 Query: 124 ----SYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGG 177 + E+ L++ D+D+FK+IND +GH GD+V+ QL +GR GG Sbjct: 239 ELDRARGERSSLAVAMIDLDHFKRINDLYGHLAGDEVLCHCVRQLEQRLRHGDSLGRYGG 298 Query: 178 EEFAAAALGSSEQEAAILA-NDLRKIIENSQINISSGPSIHITISAGI--AERCHKEPIS 234 EEF L ++++ A+ A LR+ I S + +G I + S G+ + + Sbjct: 299 EEF-LLLLPHADRDGAMAALQGLREAIALSPAHF-AGDQITLRFSVGLWCGVPGPHDTTA 356 Query: 235 TIIYRADQALYVAKKSGRNRV 255 +++ +AD ALY AK +GRN V Sbjct: 357 SLLAQADAALYQAKAAGRNTV 377 >gi|116328538|ref|YP_798258.1| GGDEF domain-containing protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331267|ref|YP_800985.1| GGDEF domain-containing protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121282|gb|ABJ79325.1| GGDEF domain receiver component of a two- component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124956|gb|ABJ76227.1| GGDEF domain receiver component of a two- component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 330 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 11/162 (6%) Query: 103 LSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVI 155 +SR D L+GL N F L + ++ ++++ DID+FK ND +GH GD+ + Sbjct: 160 ISRTDSLTGLYNRRYFYEILTTEWKRCWRTGAGIALIMLDIDHFKLYNDTYGHQGGDQCL 219 Query: 156 AFLSDQLVVVFGTPMFV-GRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 ++ + V R GGEEFA ++E A +++ ++ + +E I S+ Sbjct: 220 KQVARAIRDCARRAGDVAARYGGEEFAVILPETNESNAVVVSRNILENVEKMAIPHSASK 279 Query: 215 SIHI-TISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRN 253 + I T+S G+A + I+ +I RAD+ALY+AK+ GRN Sbjct: 280 TNSIVTVSIGMATLSPSPENSITELIERADKALYLAKEEGRN 321 >gi|109899932|ref|YP_663187.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] gi|109702213|gb|ABG42133.1| diguanylate cyclase [Pseudoalteromonas atlantica T6c] Length = 628 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 12/166 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ D L+GL N I L Y L + D+D+FK+IND++GH VGD Sbjct: 456 LTKLAITDDLTGLYNRRHIIEQLERQVHAANRYKYDLCVAIIDLDFFKKINDSYGHAVGD 515 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINI 210 +V+ SD +GR+GGEEF ++ Q+ + LR I N+ ++I Sbjct: 516 RVLIEFSDICSKNLRQSDIIGRIGGEEFLVILPHTNLQDGYNALDGLRHKISMVNNVVDI 575 Query: 211 SSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + I+ S G+ ++ AD ALY AK GR++VV Sbjct: 576 K---DLSISASIGLTFNTDSRESMQLMADADTALYQAKTQGRDQVV 618 >gi|95930950|ref|ZP_01313679.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] gi|95132959|gb|EAT14629.1| diguanylate cyclase [Desulfuromonas acetoxidans DSM 684] Length = 368 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 9/177 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQIN 143 +EL + ++ L+ D L+GL N + SL S L+ + D D FK+IN Sbjct: 192 QELAEANQKLGDLAMTDFLTGLHNRRYALLSLETLWQEADSEGHPLACIMVDADGFKEIN 251 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GDKV+ LS QL T V R+GG+EF + A + L + + Sbjct: 252 DTYGHDAGDKVLCLLSRQLKETVRTDDIVCRMGGDEFLIICPKTDIVGAMSVGELLHQAV 311 Query: 204 ENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 Q + G + S G+A H I ++ AD+ LY AKK+G+N V F Sbjct: 312 CQLQYPL-GGDLCQVRASIGVAALTQHVRTIEDLLVAADKGLYEAKKAGKNCVKRFQ 367 >gi|326201979|ref|ZP_08191849.1| diguanylate cyclase with GAF sensor [Clostridium papyrosolvens DSM 2782] gi|325987774|gb|EGD48600.1| diguanylate cyclase with GAF sensor [Clostridium papyrosolvens DSM 2782] Length = 558 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 13/167 (7%) Query: 97 YNRISQLSRIDCLSGLLN----HSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHP 149 Y + +++ +D L+G+ N H F + EK LS+V DID+FK ND +GH Sbjct: 386 YANLQEMATVDGLTGVYNRVYFHEKFEAEFKMAEEKGYNLSLVILDIDFFKIFNDTYGHL 445 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN 209 GD V+ ++ + + R GGEEF +S Q+A LR I + I Sbjct: 446 FGDVVLKEVAQTVKNNLRGTDTIARFGGEEFVLILPRTSIQQAHEKVEFLRTKIAGNVIK 505 Query: 210 ISSGPSIHITISAGIAERCHKEPIST---IIYRADQALYVAKKSGRN 253 + S +T S GIA C+ E S +I AD ALY AK++GRN Sbjct: 506 -DNLISASVTASFGIA--CYPETSSNQVGLIRDADNALYKAKENGRN 549 >gi|260597953|ref|YP_003210524.1| hypothetical protein CTU_21610 [Cronobacter turicensis z3032] gi|260217130|emb|CBA30929.1| hypothetical protein CTU_21610 [Cronobacter turicensis z3032] Length = 352 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 11/194 (5%) Query: 70 SLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNH-------SAFISSL 122 +L +ISI + L L +S ++ L + + + D L + N A + Sbjct: 159 TLPLISIYV-LALSMVSHALSARLREKTRELERYANTDPLLNIANRRRLEHDIDAALQRF 217 Query: 123 GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA 182 + + +++F DID FK ND +GH GD+++ S+ L V R GG+EF Sbjct: 218 HKHEQPAALMFIDIDDFKAANDRYGHEAGDQLLVTFSETLREATRAGDTVARFGGDEFVV 277 Query: 183 AALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYRAD 241 +S A +A+ R + + +Q+N+ ++ T+S GIA + + AD Sbjct: 278 LLPDTSFGRACAIAD--RIMAQAAQMNVFPDSALRCTLSIGIARATADMRGAAQWLKAAD 335 Query: 242 QALYVAKKSGRNRV 255 ALY AK+ G+NR+ Sbjct: 336 DALYSAKREGKNRI 349 >gi|288941039|ref|YP_003443279.1| periplasmic/7TM domain sensor diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288896411|gb|ADC62247.1| periplasmic/7TM domain sensor diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 579 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 12/165 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAF---ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 + Q + D L+GL N +S L +++ D+D FK +ND GH GD V Sbjct: 399 QQAQQRAETDPLTGLFNREGLSRRVSDLCDRRAPYALMVVDLDRFKPVNDQLGHEAGDAV 458 Query: 155 IAFLSDQL-VVVFGTPMFVGRLGGEEFAAAALG-SSEQEAAILANDLRKIIEN--SQINI 210 + +++++ +V V R+GG+EF G + E +A ++A K++E+ + I Sbjct: 459 LIAVAERMRALVRAEGDSVARIGGDEFVLILRGMTHETDAGVVAA---KLLESLATAIPT 515 Query: 211 SSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNR 254 +G + I S GIA + ++ ++ ADQA+Y AK+ GRNR Sbjct: 516 PAG-EVRIGASIGIALSPADGQQLARLLQVADQAMYRAKQDGRNR 559 >gi|239503865|ref|ZP_04663175.1| putative GGDEF family protein [Acinetobacter baumannii AB900] Length = 568 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%) Query: 99 RISQLSRIDCLSGLLNH---SAFISSLGSYNEKLS---IVFFDIDYFKQINDNFGHPVGD 152 ++ ++ D L+G+ N S ++ + SY +K S ++ DID FK +ND +GH VGD Sbjct: 405 QLKNIANTDPLTGVSNRLALSEYLKIVESYPQKFSQTCLMIIDIDRFKHVNDQYGHIVGD 464 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS- 211 +VI ++DQL + R GG+EF +A +LA +R I +I++S Sbjct: 465 QVIRRIADQLKANVRASDLIVRYGGDEFLILLEQVQFLDARLLAEKIRIAISLEEIDLSG 524 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 + +H+++S G A ++ AD++L AK GRN V Sbjct: 525 TQEKLHVSVSIGFA--IGATSWMELLENADRSLLRAKARGRNVV 566 >gi|254416220|ref|ZP_05029974.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196176902|gb|EDX71912.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 332 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-----SYNEK--LSIVFFDIDYFKQINDNFGHPVG 151 ++ +L+ +D L+ + N F S E+ LS++ D+DYFK ND+ GH G Sbjct: 140 QLKRLATLDSLTQVANRHRFDEYFNQVWRISRREQWVLSLLLCDVDYFKLYNDSKGHQAG 199 Query: 152 DKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 D+ + ++ + V P V R GGEEFA + Q A + ++ + + Sbjct: 200 DECLYKVAQAMKQVVKRPADLVARYGGEEFAVILPNTPAQGALQVGKFIQSKLTQLGLTH 259 Query: 211 SSGP-SIHITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVV 256 P +T+S G++ CH+ +I ADQALY AK++GR+R V Sbjct: 260 PRSPIKNSVTLSVGVSSTVPCHQTSPEALIAAADQALYQAKETGRDRAV 308 >gi|167756466|ref|ZP_02428593.1| hypothetical protein CLORAM_01999 [Clostridium ramosum DSM 1402] gi|167703874|gb|EDS18453.1| hypothetical protein CLORAM_01999 [Clostridium ramosum DSM 1402] Length = 985 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 15/206 (7%) Query: 63 YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL 122 Y+ V NL L++ + ++ ++ +I+++ I Y R D L+GLLN AFI + Sbjct: 519 YVFV-NLRLLVNDNAYTGVIENVTNTIVEKNVIEYERDH-----DALTGLLNRRAFIRIM 572 Query: 123 GSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRL 175 S E +++ D+D K INDN+GH +GD I+ ++ V + R+ Sbjct: 573 NSLFENEINKIKIAALLMLDLDNLKYINDNYGHEIGDNYISKAAETFVNSTPENTIISRI 632 Query: 176 GGEEFAAAALGSSEQEA-AILANDLRKIIENSQINISSGPSIHITISAGIAERCHK-EPI 233 G+EF G ++ L N L++ I + I ++ + H+ S GIA E Sbjct: 633 SGDEFFVFFYGYDDENVIKQLINKLKEAISKAFIPLADNSNFHVNASGGIAWYPRDSESF 692 Query: 234 STIIYRADQALYVAKKSGRNRVVCFS 259 + + AD A+Y K++ + + F+ Sbjct: 693 EKLQHYADYAMYKIKRTSKGNLTEFN 718 >gi|87118919|ref|ZP_01074818.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like [Marinomonas sp. MED121] gi|86166553|gb|EAQ67819.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like [Marinomonas sp. MED121] Length = 834 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 17/175 (9%) Query: 91 KELFISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQIN 143 +EL +++ L+ D L+GL N I+ K ++F D+D FK +N Sbjct: 388 QELQAERIKLNHLAHHDVLTGLANRLQIYQDIEHCINKAKQDKGKFGLLFLDVDQFKNVN 447 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILAND 198 DN GH +GD+++ ++ +L + V RLGG+EF LG+ + A L + Sbjct: 448 DNLGHAMGDQLLKQIAKRLRETVASDGIVARLGGDEFMIIYPDEDHLGTLQDRAEELNDI 507 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 L + E + ++ +G SI + + H + + T++ AD A+Y +K+ G N Sbjct: 508 LNQPFELNMTSVLAGSSIGVCLYPQ-----HGDTLETLVSNADVAMYHSKRKGPN 557 >gi|320332724|ref|YP_004169435.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM 21211] gi|319754013|gb|ADV65770.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM 21211] Length = 816 Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 7/160 (4%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGDKVI 155 ++ +R D L+GLLN +AF +L + + L ++F D+D FKQ+ND GHP GD ++ Sbjct: 381 QLEHQTRHDALTGLLNRAAFEGTLHAAMQSGAPLGVLFIDLDRFKQVNDTLGHPAGDALL 440 Query: 156 AFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS-SGP 214 ++D+L V R GG+EF L Q+ A + +++++ + ++ G Sbjct: 441 MLVADRLRQGVRDGDVVARQGGDEF--IVLLRHVQDHADVELVAQRLLDALSLPVTLEGR 498 Query: 215 SIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 ++ +T S G+A H ++T+ AD A+Y AK+ R+ Sbjct: 499 TLVVTASIGMALFPHDGADVTTLHKHADLAMYSAKRDRRS 538 >gi|295703071|ref|YP_003596146.1| response regulator diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319] gi|294800730|gb|ADF37796.1| response regulator diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319] Length = 535 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 13/164 (7%) Query: 107 DCLSGLLN-------HSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+G N +S +SS + + D+D+FK+IND +GH +GD+V+ Sbjct: 237 DELTGAYNRTYLKEIYSQQLSSYDRLKDPFCLAILDLDFFKRINDRYGHLMGDRVLQAFV 296 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINISSGPSIH 217 + + + R GGEEF ++ +EA + N +++++ ++ S + Sbjct: 297 EYMKHEIRPTDHIFRYGGEEFILLLPKTNIKEAETVLN---RLLDSFVKKVFTHQSNSFY 353 Query: 218 ITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 + S G+ E + E P+ +++AD+ALY+AK+SGR ++V S+ Sbjct: 354 CSFSGGVVEVHNTEWPLEKALHQADEALYIAKESGRQKIVASSE 397 >gi|254788102|ref|YP_003075531.1| motility regulator [Teredinibacter turnerae T7901] gi|237685689|gb|ACR12953.1| motility regulator [Teredinibacter turnerae T7901] Length = 897 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 99/195 (50%), Gaps = 22/195 (11%) Query: 81 LLGYISG-SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIV 132 +LG+++ + + E +I R+ ++ D L+GL N F L ++ ++ Sbjct: 440 ILGFLATFADITERYIHQERLRHVAEYDSLTGLANRYLFQDRLKQAFFNSEREGSEVVVM 499 Query: 133 FFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQE- 191 F D+D FK +ND+ GH VGDK++ + ++L+ + V R GG+EF L E++ Sbjct: 500 FLDLDGFKIVNDSLGHAVGDKLLKKVGERLLNILRRVDTVARFGGDEF-VILLNPHEKQL 558 Query: 192 --AAILANDLRKIIENSQINISSGPSIHIT----ISAGIAERCHKEPISTIIYRADQALY 245 A + + ++ + + QI+ G I +T IS G A+ E ++ +AD ALY Sbjct: 559 DVAEVASKIIQSLAQTYQID---GNEICVTSSIGISGGTAKNSSPE---KLMKQADAALY 612 Query: 246 VAKKSGRNRVVCFSD 260 +AK G+N F++ Sbjct: 613 LAKSEGKNNFQLFNE 627 >gi|126665574|ref|ZP_01736556.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17] gi|126630202|gb|EBA00818.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17] Length = 806 Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 20/176 (11%) Query: 100 ISQLSRIDCLSGLLNH----SAFISSLGSYNEK---LSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+GL N F L +++ LSI F D+D FK IND++GH VGD Sbjct: 367 LEQAANFDSLTGLPNRRRLTELFEQELTFADQRQSALSICFIDLDGFKGINDDYGHSVGD 426 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI--LANDLRKIIENSQINI 210 V+ ++ +L V + RLGG+EF A + E A + +R+ I + + + Sbjct: 427 AVLKTVAARLQHVLRECDIIARLGGDEF-VAIIRDVENNAVYERMLEAIRRPISHQDLTL 485 Query: 211 SSGPSIHITISAGIAERCHKEPIST--IIYRADQALYVAKKSGRNRVVCFSDIENN 264 S+ +T+ ++P + ++ ADQA+Y AK +GRNR F D E + Sbjct: 486 DLAASMGVTLYP-------RDPSAPDLLLRHADQAMYAAKDAGRNRYSIF-DFETH 533 >gi|331015153|gb|EGH95209.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 674 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 21/167 (12%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N + ++ L + E+ +++F D+D FK +ND+ GH GD+++ ++ Sbjct: 246 DELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGFKVVNDSMGHLAGDQLLKRVA 305 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214 ++L + R+GG+EFA +G + E A+ K+ E SQ++ + G Sbjct: 306 NRLQNCVRANDVLARIGGDEFAILLVGKDQPETAV------KMAERIVSQLHAAIEIEGQ 359 Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I I+ S GI A H +P ++ AD A+Y AKK GR R F+ Sbjct: 360 DIFISCSIGIVTAGEGHSKP-EDLLRDADVAMYSAKKQGRGRWSLFN 405 >gi|302129938|ref|ZP_07255928.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 674 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 21/167 (12%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N + ++ L + E+ +++F D+D FK +ND+ GH GD+++ ++ Sbjct: 246 DELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGFKVVNDSMGHLAGDQLLKRVA 305 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214 ++L + R+GG+EFA +G + E A+ K+ E SQ++ + G Sbjct: 306 NRLQNCVRANDVLARIGGDEFAILLVGKDQPETAV------KMAERIVSQLHAAIEIEGQ 359 Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I I+ S GI A H +P ++ AD A+Y AKK GR R F+ Sbjct: 360 DIFISCSIGIVTAGEGHSKP-EDLLRDADVAMYSAKKQGRGRWSLFN 405 >gi|301383442|ref|ZP_07231860.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato Max13] Length = 674 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 21/167 (12%) Query: 107 DCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+ L N + ++ L + E+ +++F D+D FK +ND+ GH GD+++ ++ Sbjct: 246 DELTALFNRAYLMNELADAFSNPDHHYERATVLFLDLDGFKVVNDSMGHLAGDQLLKRVA 305 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN--SQINIS---SGP 214 ++L + R+GG+EFA +G + E A+ K+ E SQ++ + G Sbjct: 306 NRLQNCVRANDVLARIGGDEFAILLVGKDQPETAV------KMAERIVSQLHAAIEIEGQ 359 Query: 215 SIHITISAGI--AERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I I+ S GI A H +P ++ AD A+Y AKK GR R F+ Sbjct: 360 DIFISCSIGIVTAGEGHSKP-EDLLRDADVAMYSAKKQGRGRWSLFN 405 >gi|316932201|ref|YP_004107183.1| PAS/PAC sensor -containing diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315599915|gb|ADU42450.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris DX-1] Length = 313 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 19/176 (10%) Query: 100 ISQLSR---IDCLSGLLNHSAFISSLGSYNEKL----------SIVFFDIDYFKQINDNF 146 I QL R D L+GL N + F + Y E + ++V D+D FK++ND Sbjct: 135 IEQLRRQAETDPLTGLANRAMFQAR---YREVVGDSLNHGFASALVLIDLDGFKELNDTL 191 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENS 206 GH GD + ++ +L F + RLGG+EF + L + A I R I+ S Sbjct: 192 GHLAGDACLCEVAQRLRRAFHNAGLISRLGGDEF-SIILRAPTDPARIAEVLQRTIVMLS 250 Query: 207 QINISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 + +G I ++ S G A R H+ I+ + AD ALY AK +GRNRV D Sbjct: 251 RPLFWNGHRIAVSASIGAALIGRPHRRRIADLFEEADLALYQAKAAGRNRVHLIGD 306 >gi|255099821|ref|ZP_05328798.1| putative signaling protein [Clostridium difficile QCD-63q42] Length = 832 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 13/165 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150 NR+ ++ D L+ + N +A+I L + N + +++ DIDYFK IND +GH + Sbjct: 669 NRLLDKAQRDSLTNIYN-AAYIRKLTAQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLL 727 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209 GDKV+ ++ L F VGRLGG+EF+ +E I ND+ I I Sbjct: 728 GDKVLIDVAKVLDESFAKNDIVGRLGGDEFSVYINDIINKEELINKCNDVYNHIH--LIK 785 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +G S+ I++ IA+ + + AD ALY +K+ GRNR Sbjct: 786 LPNGESLSISMGVVIAKPGQE--YDELYQIADNALYDSKRQGRNR 828 >gi|153816991|ref|ZP_01969658.1| chemotaxis protein [Vibrio cholerae NCTC 8457] gi|126512401|gb|EAZ74995.1| chemotaxis protein [Vibrio cholerae NCTC 8457] Length = 605 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 107 DCLSGLLNHSAFISSL--------GSYNEK--LSIVFFDIDYFKQINDNFGHPVGDKVIA 156 D L+GL N S+F S N K I DID FK IND++GH GD ++ Sbjct: 445 DFLTGLPNRSSFFQHAELIFNLLNNSVNGKDNTCIAILDIDKFKDINDSYGHVYGDSILK 504 Query: 157 FLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI 216 +D L F + R+GGEEF ++ A + R+IIE N+S ++ Sbjct: 505 QTADLLSKQFRDIDILARMGGEEFIILLKATNLPLAFKIIERCREIIEKHSFNLSD-ETV 563 Query: 217 HITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRN 253 ++TISAG+A+ + + + I+ AD LY +K GRN Sbjct: 564 NLTISAGLAQFSKEYKTLDEWIHAADCKLYESKHCGRN 601 >gi|300309604|ref|YP_003773696.1| diguanylate cyclase [Herbaspirillum seropedicae SmR1] gi|300072389|gb|ADJ61788.1| diguanylate cyclase protein [Herbaspirillum seropedicae SmR1] Length = 696 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 9/178 (5%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSLG----SYNEKLSIVFFDIDYFKQINDNF 146 ++L R+ + D L+GLL + F+++ E L ++F D+D FK IND + Sbjct: 262 RDLHQFAERMRYQAEHDLLTGLLGRAGFMAAAQAMAARREEVLCMMFLDLDGFKVINDAY 321 Query: 147 GHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA-ALGSSEQEAAILANDLRKIIEN 205 GH GD+V+ ++ +L + RLGG+EF AL + + +LA R++IE Sbjct: 322 GHDAGDQVLVEVARRLQGCLPAGATLARLGGDEFVILYALDAQAELPELLA---RRLIEV 378 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 + + HI +S GI ++ I ++ +D A+Y AK+ GRN+ F++ N Sbjct: 379 VRQPFARLAHRHIGLSLGIT-LSDRDDIDEMLVCSDAAMYQAKRRGRNQFCVFNETLN 435 >gi|332524151|ref|ZP_08400381.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2] gi|332107490|gb|EGJ08714.1| diguanylate cyclase [Rubrivivax benzoatilyticus JA2] Length = 340 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 28/195 (14%) Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------------------GSYNE 127 GS+L+ ++ ++ + S D L+GLLN F S G Sbjct: 135 GSVLR-VYRNFQSLLDYSERDTLTGLLNRKTFDESFMRCTVPLPPPSRDALGQRRGGGAA 193 Query: 128 KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGS 187 L +V DID+FK +ND GH +GD+V+ LS + VF + R GGEEF Sbjct: 194 WLGVV--DIDHFKHVNDCHGHLIGDEVLLLLSRLMRGVFRQGDQLYRFGGEEFVVLMRCD 251 Query: 188 SEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYV 246 + A LR IE P + IT+S G + S+ RADQA+Y Sbjct: 252 DGEAAGRAFERLRTTIEEHAF-----PRVGRITVSIGFTAVRPGDTPSSAFERADQAVYF 306 Query: 247 AKKSGRNRVVCFSDI 261 K++GRNRV +++ Sbjct: 307 VKQTGRNRVASHTEL 321 >gi|330807737|ref|YP_004352199.1| Response regulator, PleD family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375845|gb|AEA67195.1| putative Response regulator, PleD family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 333 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 11/167 (6%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +L D L+GL N F L +LS++ D+DYFK NDNFGH GD Sbjct: 164 LQRLMNSDGLTGLSNRRHFDEYLELEWRRAMRDQSQLSLLMIDVDYFKAYNDNFGHLEGD 223 Query: 153 KVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI-NI 210 + + ++ + P R GGEEFA G+S A ++A LR+ + +I + Sbjct: 224 EALRKVATAIREACSRPSDLPARYGGEEFALVLPGTSPGGARLMAEKLRQGVVALKIPHT 283 Query: 211 SSGPSIHITISAGIAERCHKE--PISTIIYRADQALYVAKKSGRNRV 255 + ++T+S G++ ++ +I AD+ LY+AK +GRNRV Sbjct: 284 TPDGGENLTVSIGVSTFIPQQGSDCRQLISAADKGLYLAKHNGRNRV 330 >gi|326943146|gb|AEA19042.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 675 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 9/175 (5%) Query: 93 LFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDN 145 L+ ++ L+ D L+GL N F +++ + ++++F D+D FK+IND Sbjct: 236 LYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFLDLDRFKKINDR 295 Query: 146 FGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN 205 GH VGD ++ ++ +L + V R GG+EF +++AI + I N Sbjct: 296 LGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILN 355 Query: 206 SQINISSGPSIHITISAGIAERC-HKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 I G + IT S GIA + ++ ++ AD A+Y AK +G+NR V FS Sbjct: 356 KPFFI-QGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFS 409 >gi|260576800|ref|ZP_05844784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sp. SW2] gi|259020943|gb|EEW24255.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sp. SW2] Length = 906 Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 10/161 (6%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GL N F I S +L +VF DID FKQIND +GH GDK++ LS Sbjct: 482 DQMTGLPNRELFREYLEAAIRLANSNTIELMLVFMDIDNFKQINDTYGHFNGDKLLLELS 541 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++ T + R+GG+EF S + AA + + L + +E + G +++T Sbjct: 542 HRIASHQNTSDTMARIGGDEFTFLHQLQSGESAAEVLDPLVQELERP--FLIDGGQVYLT 599 Query: 220 ISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +S G++ R ++ AD A+Y AK +GRN+ V FS Sbjct: 600 VSFGVSIFRRDANDADEMLRNADLAMYQAKGNGRNQHVVFS 640 >gi|226357225|ref|YP_002786965.1| diguanylate-cyclase [Deinococcus deserti VCD115] gi|226319215|gb|ACO47211.1| putative diguanylate-cyclase [Deinococcus deserti VCD115] Length = 805 Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 9/160 (5%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS-----IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161 D L+GL N + F + + LS ++F D+D FKQ+ND GH VGD+++ + + Sbjct: 369 DALTGLHNRAHFQAEAERHLADLSGGELGMLFIDLDRFKQVNDTLGHDVGDELLDQVGQR 428 Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINISSGPSIHITI 220 L V T V RLGG+EF G ++A+ RK++ + +Q G +HIT Sbjct: 429 LRNVVRTGDLVARLGGDEFTLLLPGL--RDASDAERVARKVLASLAQPFQVGGHKLHITG 486 Query: 221 SAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFS 259 S G+A I+T+ AD A+Y AK G+N V +S Sbjct: 487 SIGVAVAPQDGMDITTMQKHADVAMYRAKHDGKNAVRTYS 526 >gi|163731983|ref|ZP_02139429.1| GGDEF/EAL domain protein [Roseobacter litoralis Och 149] gi|161394281|gb|EDQ18604.1| GGDEF/EAL domain protein [Roseobacter litoralis Och 149] Length = 681 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 17/181 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSL-GSYNEKLS------IVFFDIDYFKQIND 144 EL + + + + D L+GL N A + GS N I+ D+D FKQ+ND Sbjct: 236 ELVAARQALMRAANHDALTGLFNRRAVYEHMSGSGNSAQGGDFTRCILKLDLDLFKQVND 295 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA-----AAALGSSEQEAAILANDL 199 + GH GD+V+ ++ L + FVGR+GG+EF L + A + + Sbjct: 296 SLGHDAGDRVLVRVAKILQELTRPGDFVGRIGGDEFVILIDNPRDLKMIQDLAQRIVTAV 355 Query: 200 RKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 K IE +I G SI TI+A P ++ AD ALY AK+ GR++V +S Sbjct: 356 GKPIELDRIQTKIGASIGFTIAAS----SDATP-DQLLIEADLALYEAKRGGRSQVCAYS 410 Query: 260 D 260 + Sbjct: 411 N 411 >gi|149911202|ref|ZP_01899826.1| hypothetical protein PE36_10013 [Moritella sp. PE36] gi|149805729|gb|EDM65727.1| hypothetical protein PE36_10013 [Moritella sp. PE36] Length = 661 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 25/208 (12%) Query: 72 VIISITISLLLGYISGSILKE----------LFISYNRISQLSRIDCLSGLLNHSAFISS 121 VI+ +T +LLG G ++K+ L S + +LS D L+GL N F Sbjct: 455 VILGVTFCVLLGL--GYVIKKNLDIENQNKLLQCSNTDLVELSTRDALTGLYNRRHFDHF 512 Query: 122 LGS--------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVG 173 L N +I D+D+FK INDN GH VGD V+ ++ + + + V Sbjct: 513 LQRLKQDSSFYQNSNFTIAIMDLDHFKMINDNHGHDVGDLVLIEVAKRFLHHLPSSGLVI 572 Query: 174 RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPI 233 R GGEEF S + + I++ + ++G I +T+S G + Sbjct: 573 RWGGEEFICLIEDQSHMTSLQQLEKVWSAIKDVPVATTAG-DIEVTLSIGAVTDISVAEL 631 Query: 234 ----STIIYRADQALYVAKKSGRNRVVC 257 + ++ RAD+ LY AK+SGRN+++ Sbjct: 632 MITHADLLKRADERLYKAKQSGRNQIIA 659 >gi|197117893|ref|YP_002138320.1| response receiver sensor diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem] gi|197087253|gb|ACH38524.1| response receiver sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 704 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 29/194 (14%) Query: 85 ISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFD 135 ++G+I + E + +I L+ D L+GL N F+ L Y+ L+++F D Sbjct: 245 LTGTIQDITERKRAEEQIRLLAYYDALTGLPNRRFFLQQLEQALVFANRYDRMLAVLFLD 304 Query: 136 IDYFKQINDNFGHPVGDKVIAFLSDQLV--VVFG----------TPMFVGRLGGEEFAAA 183 +D FK +ND GH VGD+++ ++D+L+ V G P V RLGG+EF Sbjct: 305 LDRFKLVNDTLGHGVGDRLLQDVADRLLRCVRRGDCLARADEECPPSLVSRLGGDEF-TI 363 Query: 184 ALGSSE--QEAAILANDLRKIIENSQINIS-SGPSIHITISAGIA-ERCHKEPISTIIYR 239 L E Q+ A +A R+I+E + S G + ++ S GI+ S +I Sbjct: 364 MLSDIEHFQDVAKIA---RRILEAVSVPYSLEGQEVFVSTSIGISLYPFDATTASDLIRN 420 Query: 240 ADQALYVAKKSGRN 253 AD A+Y AK+ GRN Sbjct: 421 ADGAMYQAKEQGRN 434 >gi|189425756|ref|YP_001952933.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ] gi|189422015|gb|ACD96413.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ] Length = 324 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 8/166 (4%) Query: 95 ISYNRISQLSRIDCLSGLLNH-------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 + + + +L+ +D L+ N A + Y + ++F DID+FK ND +G Sbjct: 140 LEFEELQRLALLDPLTETANRRYLEMKLQADLDKFQRYGIGVGVIFADIDHFKAFNDTYG 199 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ 207 H +GD ++ ++ L + GR GGEEF + A LA LR+++E+ Sbjct: 200 HGLGDDILRVVARTLQGNVRSSDLAGRWGGEEFLIVVPHADAARLARLAEKLRRLVESCF 259 Query: 208 INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRN 253 + + + TIS G A + + ++ RADQ LY AK++GRN Sbjct: 260 V-MHQEQRVTTTISMGTAVAHQGDTLEGLLERADQMLYKAKRAGRN 304 >gi|168700395|ref|ZP_02732672.1| diguanylate cyclase [Gemmata obscuriglobus UQM 2246] Length = 360 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 10/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +++ D L+GL N A I G L++V+ D D+F ++N F GD Sbjct: 178 LEKMAATDPLTGLANRRAIDEAARKEIQRRGRMPGPLAVVWIDADHFGRVNKEFSQIAGD 237 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISS 212 +V+ +L+ L T +GR+GGEEF A G+ A LA LR ++ + + Sbjct: 238 QVLVWLAGVLQASIRTTDSLGRVGGEEFLVLAPGTDLVGAEALAERLRVHVQAAH-TVYD 296 Query: 213 GPSIHITISAGIAERCHKEPISTIIYR--ADQALYVAKKSGRNRVV 256 G I +TIS G+A P++ R + +AL AK GRNR V Sbjct: 297 GQLIRMTISLGVAVAEAGVPVTYEQLRDVSARALKEAKSDGRNRAV 342 >gi|296156949|ref|ZP_06839786.1| diguanylate cyclase [Burkholderia sp. Ch1-1] gi|295892835|gb|EFG72616.1| diguanylate cyclase [Burkholderia sp. Ch1-1] Length = 524 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 18/194 (9%) Query: 72 VIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSY------ 125 V+IS +SL L++ + + +L+ D L+GL N + L Sbjct: 323 VVISWLLSL--------ALRDKLRAQAALVRLAATDPLTGLGNRRVLDTRLDEEWRRARR 374 Query: 126 -NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL-VVVFGTPMFVGRLGGEEFAAA 183 + LS +F DID+FKQ ND GH GD+ + +++ + V V R GGEEFA Sbjct: 375 SGQPLSALFIDIDHFKQFNDAHGHASGDEALVAVAECISAAVRRWVDVVARYGGEEFAVI 434 Query: 184 ALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAE--RCHKEPISTIIYRAD 241 +S + A +A +R+ ++ + S G S +T+S G A ++ AD Sbjct: 435 LPDTSAEGALKVAEKIRRKVQGQDVIHSGGESATVTVSVGCATCVPAGGANALDLLAAAD 494 Query: 242 QALYVAKKSGRNRV 255 + LYVAK +GRNRV Sbjct: 495 RQLYVAKAAGRNRV 508 >gi|299135305|ref|ZP_07028496.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Afipia sp. 1NLS2] gi|298590282|gb|EFI50486.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Afipia sp. 1NLS2] Length = 830 Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 19/166 (11%) Query: 99 RISQLSRIDCLSGLLNHSAFISSL--------GSYNEKLSIVFFDIDYFKQINDNFGHPV 150 RI+ ++ D L+GL N F L GS +E++ ++ D+D FK +ND+FGHPV Sbjct: 390 RIAYMAHHDNLTGLPNRVKFREHLDQALERSDGS-DERIGVLCIDLDMFKNVNDSFGHPV 448 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS-----EQEAAILANDLRKIIEN 205 GD+++ ++++L V V RLGG+EFA + +AIL D+ Sbjct: 449 GDRLLKMVAERLHAVIPADSLVARLGGDEFAMIVKRNPMPRDLNDLSAILIADVSAPYAV 508 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 + + G S+ I +S G ++ AD ALY AK G Sbjct: 509 DGLELVIGASVGIAMSPGDGVTG-----DDLLRNADMALYRAKSEG 549 >gi|294142351|ref|YP_003558329.1| GGDEF domain-containing protein [Shewanella violacea DSS12] gi|293328820|dbj|BAJ03551.1| GGDEF domain protein [Shewanella violacea DSS12] Length = 371 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 11/175 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 K+ + Y R Q++ ID L+ + N F I + LS++ D+DYFK++N Sbjct: 197 KQHLLKYFR--QVALIDGLTNISNRRHFDEVLSQEIRAAERNKHPLSVILIDVDYFKKLN 254 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D+ GH VGD+ + L+ L+ + P R GGEEF + + ++A L+ Sbjct: 255 DSLGHQVGDECLIELAKVLMSIANRPRDLAARYGGEEFVILLPDTDLNGSQLIAGKLKLA 314 Query: 203 IENSQ-INISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ++ I+ S S +T+S G+ ++ AD+ LY AK +GR+R + Sbjct: 315 LSEARLIHPDSAVSDLVTVSQGVCLWQQGMRPEDLMGCADKLLYQAKSTGRDRFI 369 >gi|288923375|ref|ZP_06417504.1| diguanylate cyclase [Frankia sp. EUN1f] gi|288345265|gb|EFC79665.1| diguanylate cyclase [Frankia sp. EUN1f] Length = 568 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 12/159 (7%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + F ++ + + ++++F D+D FK +ND GHP GD+++ + Sbjct: 393 DPLTGLANRALFNDRLQQAVTRHDRHGDPIAVLFCDLDDFKDVNDTLGHPAGDELLRATA 452 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 +L V RLGG+EF A L + A + + I + + +I + Sbjct: 453 RRLTSSVRAADTVARLGGDEF--AVLLEGPHDPAATGHRIAATIRGPCPLVGTTRTIQAS 510 Query: 220 ISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVV 256 I + E P++ T+++ ADQA+Y AK+ G+ ++V Sbjct: 511 IGMVVVEPA-VGPLTAETLLHHADQAMYTAKRRGKGQMV 548 >gi|260887571|ref|ZP_05898834.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Selenomonas sputigena ATCC 35185] gi|330837944|ref|YP_004412524.1| diguanylate cyclase with extracellular sensor [Selenomonas sputigena ATCC 35185] gi|260862746|gb|EEX77246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Selenomonas sputigena ATCC 35185] gi|329745708|gb|AEB99064.1| diguanylate cyclase with extracellular sensor [Selenomonas sputigena ATCC 35185] Length = 737 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 12/172 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAFISSL-----GSYNEKLSIVFF--DIDYFKQIN 143 K+L + + Q + ID L+GLLN A S+ G+ E FF D+D+FK++N Sbjct: 550 KKLMRARDIYKQEAEIDPLTGLLNKKAIQSACEEMLGGTLKEGAVHAFFVMDLDHFKEMN 609 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKII 203 D +GH GD V+ + ++ +F +GR GG+EF L + + + R+++ Sbjct: 610 DTYGHQAGDDVLRRFAQEVRSIFRQSDHIGRFGGDEF--TVLMPNVTTLVAVEHHARRLM 667 Query: 204 ENSQ-INISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 +Q + + S+ +++S GIA H + AD ALY K++GRN Sbjct: 668 TAAQELEVRDDRSL-LSVSIGIALAPLHGTNYDDLFMAADAALYDVKRAGRN 718 >gi|218246273|ref|YP_002371644.1| PAS/PAC/GAF sensor-containing diguanylate cyclase [Cyanothece sp. PCC 8801] gi|218166751|gb|ACK65488.1| diguanylate cyclase with PAS/PAC and GAF sensors [Cyanothece sp. PCC 8801] Length = 625 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 13/180 (7%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFK 140 + +EL ++ + QL+ +D L+ + N F L + LS++ D+D+FK Sbjct: 443 QLYRELRLANEELEQLAFVDSLTEVANRRRFDEYLQQEWRRLTRAKQPLSLIVCDVDFFK 502 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDL 199 ND +GHP GD + ++ L P V R GGEEFA + A +A ++ Sbjct: 503 FYNDTYGHPAGDNCLQQVAQVLQQSVKRPADLVARHGGEEFAIVLPNTDISGAVHIAGEI 562 Query: 200 RKIIENSQI-NISSGPSIHITISAGIAERCHKEP---ISTIIYRADQALYVAKKSGRNRV 255 R + ++ + +S S ++T+S GIA + P + +++ AD ALY AK GR+R+ Sbjct: 563 RSRLRGLKLEHRASLVSDYVTLSFGIAT-TYPTPQTVVESLLMEADLALYQAKGQGRDRI 621 >gi|170750741|ref|YP_001757001.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] gi|170657263|gb|ACB26318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] Length = 829 Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVG 151 RI+ ++ D L+GL N F LG E+ ++ D+D FK +ND GHPVG Sbjct: 393 RIAHMAHHDALTGLPNRVLFRDRLGEAIARHARDGEEAVLLCLDLDKFKIVNDTLGHPVG 452 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDL--RKIIENSQIN 209 D ++ ++++ V RLGG+EFA G + LA+ L R I E + Sbjct: 453 DALLREAAERIAGCLRKDDLVARLGGDEFAILVRG---MDLPALADGLIARVIAELGRPF 509 Query: 210 ISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 G HI S G+A R +P T++ AD ALY AK G + CF Sbjct: 510 RLEGQDCHIGTSIGVACLPRDGTDP-ETLMKNADLALYRAKAEGGSTFRCF 559 >gi|91793185|ref|YP_562836.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91715187|gb|ABE55113.1| GGDEF domain [Shewanella denitrificans OS217] Length = 344 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 17/169 (10%) Query: 107 DCLSGLLNHSAFISSLGSY-------NEKLSIVFF-DIDYFKQINDNFGHPVGDKVIAFL 158 D L+ L N +AF +L L I++ D+D FK +ND GHPVGD+V+ L Sbjct: 181 DTLTKLYNRAAFDDNLADAMARAKRNTSNLVIMYLIDLDGFKTVNDTHGHPVGDRVLKVL 240 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILAN----DLRKIIENSQINISSGP 214 + +L+ V RLGG+EFA G+ + + + LA +++ I+ ++ +S G Sbjct: 241 AKRLLNAQRQGEMVCRLGGDEFAILIEGTGDTQVSPLAERILLSIKQPIDVEELQLSIGC 300 Query: 215 SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIEN 263 SI I+I +A + + ++D+A+Y K +G+N + + N Sbjct: 301 SIGISIYPSLAANSDE-----LFSQSDKAMYTIKNTGKNGFCLYKNQPN 344 >gi|54294243|ref|YP_126658.1| hypothetical protein lpl1308 [Legionella pneumophila str. Lens] gi|53754075|emb|CAH15548.1| hypothetical protein lpl1308 [Legionella pneumophila str. Lens] Length = 792 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 12/164 (7%) Query: 99 RISQLSRIDCLSGLLNHSAFISSLG-------SYNEKLSIVFFDIDYFKQINDNFGHPVG 151 R++ + D L+GL N +A L N LS++F DID FK IND+ GH G Sbjct: 352 RLAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAG 411 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 D ++ S +L V R GG+EF + + ++ ++A ++ K + I + Sbjct: 412 DILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILVAQNILKAVAQP-IKLP 470 Query: 212 SGPSIHITISAGIAERCHKEPI--STIIYRADQALYVAKKSGRN 253 + I +T S GI+ K+ I ST++ +D A+Y+AKK GRN Sbjct: 471 TQEVI-VTTSIGIS-LFPKDGIDASTLLKNSDTAMYLAKKEGRN 512 >gi|328887571|emb|CAJ67540.2| putative diguanylate kinase signaling protein [Clostridium difficile] Length = 832 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 13/165 (7%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSLGSYN-------EKLSIVFFDIDYFKQINDNFGHPV 150 NR+ ++ D L+ + N +A+I L + N + +++ DIDYFK IND +GH + Sbjct: 669 NRLLDKAQRDSLTNIYN-AAYIRKLTAQNLLNLSTEKNGALLIIDIDYFKSINDTYGHLL 727 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI-LANDLRKIIENSQIN 209 GDKV+ ++ L F VGRLGG+EF+ +E I ND+ I I Sbjct: 728 GDKVLIDVAKVLDESFAKNDIVGRLGGDEFSVYINDIINKEELINKCNDVYNHIH--LIK 785 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + +G S+ I++ IA+ + + AD ALY +K+ GRNR Sbjct: 786 LPNGESLSISMGVVIAKPGQE--YDELYQIADNALYDSKRQGRNR 828 >gi|330830774|ref|YP_004393726.1| GGDEF domain-containing protein [Aeromonas veronii B565] gi|328805910|gb|AEB51109.1| GGDEF domain protein [Aeromonas veronii B565] Length = 538 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 20/164 (12%) Query: 106 IDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+ + N +A L Y L + DID+FK INDN+GH GDK + + Sbjct: 380 LDSLTQVHNRAALDERLEQEYKRWLRYRTPLCMAIIDIDHFKNINDNYGHMAGDKALKVV 439 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP---- 214 + L F+ R GGEEF I + +K +E + I S P Sbjct: 440 AKALQSALRDTDFIARFGGEEFVVLL-------PNINPDKFQKPLETLRQTIKSIPFRFR 492 Query: 215 --SIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + ITIS G + S + RAD+ALY +K +GR++V Sbjct: 493 DAKVEITISIGATLFKDGDNPSDVFERADKALYHSKHTGRDQVT 536 >gi|312135310|ref|YP_004002648.1| diguanylate cyclase [Caldicellulosiruptor owensensis OL] gi|311775361|gb|ADQ04848.1| diguanylate cyclase [Caldicellulosiruptor owensensis OL] Length = 557 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 12/171 (7%) Query: 97 YNRISQLSRIDCLSGLLNH--------SAFISSLGSYNEKLSIVFFDIDYFKQINDNFGH 148 Y ++ ++ +D L+G N +S G Y +SI FD+D FK++ND +GH Sbjct: 382 YQQMRSMAMVDGLTGAFNRIYLYEFLEKEVQTSGGRY--PISIALFDVDNFKKLNDTYGH 439 Query: 149 PVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI 208 GDKV+ + V R GGEEF EA + +R+ IE+ I Sbjct: 440 LFGDKVLQTIVRIAREKVRKGDIVARYGGEEFIIVFSHLESSEAYKVVERIRRAIESETI 499 Query: 209 NISSGPSIHITISAGIAER-CHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + +T+S GIA H + + ++ AD A+Y AK SG+N V + Sbjct: 500 E-DNLVQTRVTVSFGIASYPSHADNVKDLVKCADIAMYRAKSSGKNCTVIY 549 >gi|284992145|ref|YP_003410699.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus DSM 43160] gi|284065390|gb|ADB76328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geodermatophilus obscurus DSM 43160] Length = 718 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 15/164 (9%) Query: 107 DCLSGLLNHSAFISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+GL N F++ L S + + + D+D FK +ND GH VGD+++ ++ Sbjct: 292 DALTGLPNRRTFLAHLDAVFDQASPGARAGLCYLDLDGFKAVNDTLGHEVGDQLLVAVAQ 351 Query: 161 QLV-VVFGTPMFVGRLGGEEFAAAALGS--SEQEAAILANDLRKIIENSQINISSGPSIH 217 +LV VV + V RLGG+EF G+ S Q A+ L + + ++ G + Sbjct: 352 RLVSVVRDRGLSVARLGGDEFVVLVPGTSGSGQLVALAEEVLAAVAQPVELG---GRRVE 408 Query: 218 ITISAGIAER--CHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 IT S G+ ER +P + ++ AD LY AK GR++ F Sbjct: 409 ITASVGVVERSIADIDP-AELLRAADMTLYWAKADGRSQWALFE 451 >gi|326317056|ref|YP_004234728.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373892|gb|ADX46161.1| diguanylate cyclase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 347 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 89/216 (41%), Gaps = 34/216 (15%) Query: 74 ISITISLLLGYISGSILKELFISYNRISQL---SRIDCLSGLLNHSAFISSLG------- 123 I +T S +++ +F Y L S D L+GL N F Sbjct: 120 IEVTQSRPFSAHKLDVIQSVFFVYQNYQSLLDYSERDALTGLFNRKTFDEQFARRAGMSS 179 Query: 124 ---------------SYNEKLS--IVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVF 166 E L + DID+FKQ+ND FGH GD+V+ +++ L F Sbjct: 180 NAATEVSAEPDDASQPRGEPLQHWLAVVDIDHFKQVNDRFGHLYGDEVLILIANILRNSF 239 Query: 167 GTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI-HITISAGIA 225 + R GGEEF ++ A N R ++ P + +T+S G A Sbjct: 240 RGHDRIFRFGGEEFVVLLRSTTLATAHKAFNRFRTAVQEYDF-----PQVGRVTVSLGFA 294 Query: 226 ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 P+ I+ +ADQALY AK+ GRNRV + D+ Sbjct: 295 STERGAPVE-ILGQADQALYYAKEHGRNRVCYYDDL 329 >gi|229529374|ref|ZP_04418764.1| GGDEF family protein [Vibrio cholerae 12129(1)] gi|229333148|gb|EEN98634.1| GGDEF family protein [Vibrio cholerae 12129(1)] Length = 429 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 8/132 (6%) Query: 135 DIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAI 194 DID+FK+IND +GH GD+++ ++ L + R GGEEF S +EA Sbjct: 299 DIDHFKKINDQYGHITGDRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWY 358 Query: 195 LANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + + LR+ +++ + SI T G + I RAD ALY AK++GRN+ Sbjct: 359 MLDRLRQRVKDDHSLYGTTISIGFTFIDG--------SLPAAISRADTALYQAKEAGRNQ 410 Query: 255 VVCFSDIENNTC 266 VV S+ EN++ Sbjct: 411 VVADSEKENDSA 422 >gi|284993380|ref|YP_003411935.1| diguanylate cyclase with PAS/PAC sensor [Geodermatophilus obscurus DSM 43160] gi|284066626|gb|ADB77564.1| diguanylate cyclase with PAS/PAC sensor [Geodermatophilus obscurus DSM 43160] Length = 296 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 20/162 (12%) Query: 107 DCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D L+GL N + F L E+ S++ D+D FK IND GHPVGD V+ + Sbjct: 140 DPLTGLPNRALFTDRLQHALERGRRERTPTSLLGVDLDSFKTINDVHGHPVGDAVLIAFA 199 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHIT 219 ++L V R+GG+EF+ S +A LA LR + N + ++ G +I ++ Sbjct: 200 ERLTSVLRASDTAARVGGDEFSIVCENSGRADAEALATRLRDRV-NEPLQLAGGLTIPLS 258 Query: 220 ISAGIA--------ERCHKEPISTIIYRADQALYVAKKSGRN 253 IS GI ER ++ AD A+YV K + R Sbjct: 259 ISIGIGTVEGGIDPERA----FGGLVREADDAMYVDKAARRG 296 >gi|254254083|ref|ZP_04947400.1| hypothetical protein BDAG_03372 [Burkholderia dolosa AUO158] gi|124898728|gb|EAY70571.1| hypothetical protein BDAG_03372 [Burkholderia dolosa AUO158] Length = 520 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 15/165 (9%) Query: 100 ISQLSRIDCLSGLLN----HSAFISSLGSYNEK----LSIVFFDIDYFKQINDNFGHPVG 151 I L+R D L+GL N H+ L + L++++ D+D FK IND FGH G Sbjct: 342 IRHLARHDALTGLPNRHELHAQLKRMLARGQRQPGLALAVMYLDLDGFKPINDRFGHHAG 401 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQIN 209 D+V+ ++ +L R+GG+EF A ++ + LA +IIE ++ Sbjct: 402 DEVLMQVAQRLGGTLPHGELAARVGGDEFIVAIEDTTMPACSTLAA---RIIERISAPYT 458 Query: 210 ISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 +S G ++ IS GIA + H P +I +AD ALY AK +G+ Sbjct: 459 LSIGETVSFGISIGIALDDGHGSP-DELIRQADSALYDAKSAGKG 502 >gi|89896130|ref|YP_519617.1| hypothetical protein DSY3384 [Desulfitobacterium hafniense Y51] gi|89335578|dbj|BAE85173.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 265 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 79/174 (45%), Gaps = 26/174 (14%) Query: 107 DCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 D ++GL N + ++ S+ DID FK IND +GH GDKVI ++ Sbjct: 92 DSMTGLPNKGFMYLRLNIDMEKYAKQEKEYSLAMIDIDRFKNINDTYGHLAGDKVIKEVA 151 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSI--- 216 L V R GGEEFA +SE+ AA L +R ++EN GP I Sbjct: 152 GILRKNVRASDEVIRWGGEEFAILLPETSEEGAANLIERIRNLMENHDF----GPEIASQ 207 Query: 217 HITISAGIAERCHKEPIST-----------IIYRADQALYVAKKSGRNRVVCFS 259 +T SAG+ E + I+ +DQALY AKK+ RN V FS Sbjct: 208 KVTFSAGVVSYKKLEEVKARENRLTNNTDLIVNFSDQALYQAKKT-RNTVWRFS 260 >gi|332993899|gb|AEF03954.1| diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2] Length = 701 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 22/208 (10%) Query: 65 LVENLSLVIISITISLLLGYISGSIL---KELFISYNRISQLSRIDCLSGLLNHSAFISS 121 L EN++L++ I + LL+ + L +E I +L+ D L+GL N + + Sbjct: 231 LGENINLLLEMIEVELLINHEQTQTLVNQQETMI------RLANYDSLTGLPNRQFVLDN 284 Query: 122 LG-------SYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGR 174 L ++ L+++FFD+D FK IND+ GH GD ++ ++D++ + V R Sbjct: 285 LRLELARARRNDDDLALLFFDLDGFKGINDSLGHETGDLILIEVADRVSALLREGDLVAR 344 Query: 175 LGGEEFAAAALGSSEQEAAILANDLRKIIE--NSQINISSGPSIHITISAGIAERCHKE- 231 LGG+EF L E L N ++I+ S + G S+ + +S G+A + Sbjct: 345 LGGDEF--LVLPDRETGDTTLENMAIRLIDAFTSPFEL-RGLSLSVGVSVGVARAIDADY 401 Query: 232 PISTIIYRADQALYVAKKSGRNRVVCFS 259 +S ++ AD A+Y +K GR F+ Sbjct: 402 DLSELMSNADLAMYRSKAKGRGSFTIFT 429 >gi|332297272|ref|YP_004439194.1| diguanylate cyclase [Treponema brennaborense DSM 12168] gi|332180375|gb|AEE16063.1| diguanylate cyclase [Treponema brennaborense DSM 12168] Length = 333 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 10/170 (5%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + +LS D L+G+ N F + +S++ DIDYFK ND +GHP GD Sbjct: 158 LQRLSCTDVLTGIANRRGFERLAPDLWKEAVVHGRLMSLIMVDIDYFKDFNDTYGHPEGD 217 Query: 153 KVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINIS 211 K++ ++ ++ V + + R GGEEF E A +R+ +E +I + Sbjct: 218 KILKTVAKKITNVVDSGKSISCRYGGEEFLIMMFSDDFNEILHAAERIRQSVEYLRIKGA 277 Query: 212 SGPSIHITISAGIAERCHKEPIS--TIIYRADQALYVAKKSGRNRVVCFS 259 IT+S G+ + ++ T + AD ALY AKK+GRN V F+ Sbjct: 278 HPGHELITVSVGLFVTNARAELNWETCVSYADLALYEAKKNGRNCVRLFT 327 >gi|326388893|ref|ZP_08210475.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Novosphingobium nitrogenifigens DSM 19370] gi|326206493|gb|EGD57328.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Novosphingobium nitrogenifigens DSM 19370] Length = 769 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 15/183 (8%) Query: 89 ILKELFISYNRISQLSRIDCLSGLLNHSAFISSL---------GSYNEKLSIVFFDIDYF 139 + +EL +S + + D +SGL N ++ L G + + + D+D F Sbjct: 316 VTRELLVSEAQARHNALHDGMSGLPNRMYYMQRLHEELARHLAGEVRGDVFVAYLDLDGF 375 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILAN 197 K +ND GH VGD+++ ++ +L V F+ R GG+EF A G Q A Sbjct: 376 KGVNDALGHHVGDELVRQVAMRLRHVLPAGDFIARFGGDEFVLMRCAEGGRAQ-ADAFGQ 434 Query: 198 DLRKIIENSQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 D+ ++ + + G +I +T S GI+ H E ++ RAD ALY AK+ GR R Sbjct: 435 DVMTLMREPFLVV--GHTIEVTCSCGISWGPSHSEDPGELLRRADIALYRAKQLGRARYR 492 Query: 257 CFS 259 F+ Sbjct: 493 RFT 495 >gi|323487913|ref|ZP_08093171.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis MPA1U2] gi|323398647|gb|EGA91435.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis MPA1U2] Length = 760 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 11/172 (6%) Query: 98 NRISQLSRIDCLSGLLNHSAFI----SSLGSYNE---KLSIVFFDIDYFKQINDNFGHPV 150 +++ ++ D L+GL N F+ SS+ + +E KL++VF D+D FK IND FGH Sbjct: 322 HQVEHIAYHDELTGLPNRRLFLKNLESSIATADESGKKLAVVFIDLDRFKNINDTFGHEF 381 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD ++ S ++ + + R GG+EF L + + EA I + +I Q + Sbjct: 382 GDLLLQDFSRKISENLRSVDTISRQGGDEF-TLILNNIQDEADITPT-IHRIQAAFQHAL 439 Query: 211 S-SGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSD 260 S +H+++S GIA + + S ++ AD A+Y AK G+N FSD Sbjct: 440 SIKDQELHVSMSIGIAIYPDNGKSTSELLKHADSAMYSAKAKGKNNYQFFSD 491 >gi|254490103|ref|ZP_05103295.1| GGDEF domain protein [Methylophaga thiooxidans DMS010] gi|224464691|gb|EEF80948.1| GGDEF domain protein [Methylophaga thiooxydans DMS010] Length = 344 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 7/130 (5%) Query: 134 FDIDYFKQINDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEA 192 DID+FK IND++GH GD+VI ++ + V R GGEEF +E++A Sbjct: 200 LDIDHFKVINDSYGHLYGDEVIILVARLMSSGCIRDDDLVYRYGGEEFVVLLKAPNEEDA 259 Query: 193 AILANDLRKIIENSQINISSGPSI-HITISAGIAERCHKEPISTIIYRADQALYVAKKSG 251 A N +R++I + P + +T S G E ++ S +I +AD+ALY AK++G Sbjct: 260 AHTFNRIREMISEHEF-----PQLKQVTTSIGFVEVLGQQSPSDVIGQADEALYYAKQNG 314 Query: 252 RNRVVCFSDI 261 RN+V + ++ Sbjct: 315 RNQVQSYREL 324 >gi|209967162|ref|YP_002300077.1| diguanylate cyclase, putative [Rhodospirillum centenum SW] gi|209960628|gb|ACJ01265.1| diguanylate cyclase, putative [Rhodospirillum centenum SW] Length = 594 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 10/166 (6%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 + Q + D L+G+ N F + Y S++ DID+FKQ ND GH +GD Sbjct: 426 LEQAALNDPLTGVWNRRRFEQALEEAAARALRYGRPFSLLLIDIDHFKQFNDTHGHALGD 485 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQI---N 209 + + ++ L + R GGEEF+ + A LA+DLR+ + I Sbjct: 486 RALQMVAGVLAGRSRQVDCLARWGGEEFSLLLPETDAVSAQALASDLRRAVAALSIADVG 545 Query: 210 ISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +T+S G+ + E I + R D ALY AK +GRN+V Sbjct: 546 PGDVGPGGVTVSIGVGQATPGESIDALFRRVDAALYRAKAAGRNQV 591 >gi|167580272|ref|ZP_02373146.1| EAL/GGDEF domain protein [Burkholderia thailandensis TXDOH] Length = 772 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 16/204 (7%) Query: 62 EYILVENLSLVIIS-ITISLL--LGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAF 118 +Y N+ L++ S IT+++L G +G I K L ++QL+ D L+GL N A Sbjct: 278 DYHHTRNVYLLMTSFITLAMLAFFGVATGLIGK-LLGREREMTQLAEFDLLTGLANRYAT 336 Query: 119 ISSL------GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFV 172 + SL S +L+I+F D+D FK +ND GH GD V+ + +L + Sbjct: 337 LRSLRNDVALPSNLSRLAILFIDLDNFKTVNDTLGHNAGDIVLQMTAARLSDAVTNEGAL 396 Query: 173 GRLGGEEFAAAALGSS-EQEAAILANDL-RKIIENSQINISSGPSIHITISAGIA-ERCH 229 R+GG+EF G + E+ A LA + R E + G S + S GIA Sbjct: 397 ARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPFDVR---GSSFVLHASIGIALHSVE 453 Query: 230 KEPISTIIYRADQALYVAKKSGRN 253 E ++ +AD A+Y AK +G+N Sbjct: 454 NESEIDLLKKADLAMYSAKDAGKN 477 >gi|116052366|ref|YP_792677.1| hypothetical protein PA14_56280 [Pseudomonas aeruginosa UCBPP-PA14] gi|296391036|ref|ZP_06880511.1| hypothetical protein PaerPAb_22909 [Pseudomonas aeruginosa PAb1] gi|313106857|ref|ZP_07793066.1| hypothetical protein PA39016_000780025 [Pseudomonas aeruginosa 39016] gi|115587587|gb|ABJ13602.1| hypothetical protein PA14_56280 [Pseudomonas aeruginosa UCBPP-PA14] gi|310879568|gb|EFQ38162.1| hypothetical protein PA39016_000780025 [Pseudomonas aeruginosa 39016] Length = 375 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/281 (24%), Positives = 119/281 (42%), Gaps = 42/281 (14%) Query: 8 FLSIWLCHEKNLESFSPHTFMIYF--SIFFSIF-IATVIFIANIFLFYIGLTPFYGLEYI 64 +L+ +L H +L TFM+++ ++ F +F + +F L +I + Y +E + Sbjct: 93 WLTYFLYHVDSLRG----TFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIYLVEAL 148 Query: 65 ----------LVENLSLVIISITISLLLGYISGSILKELFISY-------------NRIS 101 ++ L + I+ + +SL YI + Y ++ Sbjct: 149 QQRLELPGRAALQVLVMFIVMVWLSLFASYIQAMRQRMRQRRYALQAHQDTLRGMMRQLE 208 Query: 102 QLSRIDCLSGLLNHSAFISSLGSY-------NEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 L D L+GL N F+ L S N + + D+D+FK+IND GH GD+V Sbjct: 209 DLVATDELTGLFNRRHFMR-LASRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRV 267 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + + + R GGEEF + ++ LR E ++ G Sbjct: 268 LQTFAAVARSCLRDGDVLARYGGEEFVLLLPHADAEQLESCCERLRLAFEQAE---PVGV 324 Query: 215 SIH-ITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 ++ +++S G+ + + + RADQALY AK+ GRNR Sbjct: 325 TVDTLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNR 365 >gi|1903400|gb|AAC45065.1| response regulator protein [Aeromonas jandaei] Length = 415 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 13/173 (7%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQIND 144 E +N I + + D L+GL N + + + E+ LS+ D+D+FKQ+ND Sbjct: 242 EALEQFNSIQESANRDYLTGLYNRRYWFNEGQKWFEEQQRLQSTLSLCVLDVDHFKQVND 301 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204 ++GH +GD+++ L+ QL F M + R GGEEFA S +L L + + Sbjct: 302 HWGHAIGDQLLCHLTRQLTQFFPDAM-IARFGGEEFALMVPHCS---VPVLLKRLEGLRQ 357 Query: 205 N-SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 Q +S + + S G+ + + + AD+ LY AK +GR+++V Sbjct: 358 QLRQHPLSPDVPLFVRASYGVVS-VGRVSMDEALSEADRLLYQAKNTGRDKIV 409 >gi|117929112|ref|YP_873663.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus 11B] gi|117649575|gb|ABK53677.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus 11B] Length = 884 Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 23/197 (11%) Query: 76 ITISLLLGYISGSI--LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK----- 128 ++++L G + S+ L+EL +++QL+ D L+GL N + F L K Sbjct: 413 VSVALENGRLEQSLAQLREL---EQKLTQLAFHDPLTGLANRALFSERLSQVLAKAKAEG 469 Query: 129 --LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFA----- 181 +++F D+D FK +ND GH GD+++ +++++ RLGG+EFA Sbjct: 470 RTCAVLFIDLDDFKTVNDTLGHDAGDELLCAVAERITGCLRPSDQPARLGGDEFAVIIED 529 Query: 182 AAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRAD 241 A + ++E+ AA + LR I G +HI S GIA + ++ AD Sbjct: 530 ALSTQAAERIAARITEQLRAPIS------VHGCELHIRASIGIATSQGVQTADELLRNAD 583 Query: 242 QALYVAKKSGRNRVVCF 258 A+Y+AK G+ R F Sbjct: 584 LAMYMAKADGKGRYRWF 600 >gi|313200780|ref|YP_004039438.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312440096|gb|ADQ84202.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 641 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%) Query: 106 IDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 +D L+G+ N +A ++S + E+ ++ D+D FK +ND GH VGD ++ + Sbjct: 218 LDPLTGIHNRTALETRLQAALASAHTQGEQHMFMYLDLDQFKIVNDTCGHAVGDSLLKQI 277 Query: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHI 218 + T + RLGG+EFA L A +A+D+ IE + H+ Sbjct: 278 VSIIRGCLSTDALLARLGGDEFAILLLCCDSDAAGKIADDICNRIEAFRF-AHEQKRFHV 336 Query: 219 TISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDIE 262 + S G+ H+ + IS ++ A+ A Y AK+ GRNR + D + Sbjct: 337 SASIGLVRIDHQWQDISALLQIANAACYTAKQEGRNRTHLYRDTD 381 >gi|237797914|ref|ZP_04586375.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237805310|ref|ZP_04592014.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020765|gb|EGI00822.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026417|gb|EGI06472.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 332 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 L+ + DID FK +ND +GH GD V+ +++ GR+GGEEFAA G + Sbjct: 203 LAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGRSALRRGDLFGRIGGEEFAAVFPGCA 262 Query: 189 EQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIY-RADQALYVA 247 A +A L++ I+ S G + IT S G+ ++ +Y RAD A+Y A Sbjct: 263 PDMAMQIAERLQREIQRQNFQ-SGGVTFSITASQGLTNLGPEDQSLEALYGRADAAMYQA 321 Query: 248 KKSGRNRVV 256 K+ G+N++V Sbjct: 322 KRQGKNQIV 330 >gi|254490929|ref|ZP_05104111.1| hypothetical protein MDMS009_1262 [Methylophaga thiooxidans DMS010] gi|224463838|gb|EEF80105.1| hypothetical protein MDMS009_1262 [Methylophaga thiooxydans DMS010] Length = 1084 Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 21/174 (12%) Query: 100 ISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGD 152 +++L+ ID L+GL N + F I + +L++ F D+D+FK IND+ GH GD Sbjct: 652 LTRLASIDGLTGLPNRAVFTDRVEHAIHKSMRNSGRLAVFFLDLDHFKHINDSLGHKAGD 711 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFA--AAALGSSEQEAAILANDLRKI-----IEN 205 ++ ++ ++ V RLGG+EF + S+E + ++ + IEN Sbjct: 712 ILLTEVAGRIKACVREGDTVARLGGDEFTLLLEDVRSAEYVGKVAEKVIKSMTQPYQIEN 771 Query: 206 SQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259 +++NIS PSI I++ + ++ AD A+Y AKK GRN +S Sbjct: 772 TEVNIS--PSIGISLYPA-----DGRDVDMLVRNADAAMYHAKKVGRNNFQFYS 818 >gi|222081327|ref|YP_002540690.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] gi|221726006|gb|ACM29095.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] Length = 714 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 14/159 (8%) Query: 107 DCLSGLLNHSAFISSL----GSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQL 162 D LSGLLN + +L S N +S+ D+D FK +ND +GH VGD +I ++ L Sbjct: 296 DSLSGLLNRHGLLDALDHPGNSDNRSMSLYLIDLDGFKAVNDAWGHAVGDDLIRIIAKVL 355 Query: 163 VVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKIIENSQINISSGPSIHIT 219 + RLGG+EFA +GS+ E E AIL IE +++ G +I Sbjct: 356 PTCHHEIIAAARLGGDEFALVQIGSATPEEVEKAILG----LFIEPFKLD---GRTIEAG 408 Query: 220 ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 S G A ++ RAD ALY AK+ G+ V + Sbjct: 409 ASIGSAVGTSSIAPLELLRRADMALYRAKEDGKGHAVEY 447 >gi|253698909|ref|YP_003020098.1| diguanylate cyclase [Geobacter sp. M21] gi|251773759|gb|ACT16340.1| diguanylate cyclase [Geobacter sp. M21] Length = 408 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 19/166 (11%) Query: 107 DCLSGLLNHS-------------AFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 D L+G N S A + G L + DID FK++NDN GH GD Sbjct: 246 DALTGTFNKSQIELLACKEFARCARRTEKGLAGADLGFIMIDIDRFKEVNDNHGHLAGDV 305 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSG 213 ++ + ++ + +GR GGEEF GS ++ ++A + ++ + + + G Sbjct: 306 LLQQFAARIARSLRSYDSIGRFGGEEFLVMLPGSDLEQTRVVARKIWSLLRD-EPYLVDG 364 Query: 214 PSIHITISAGIAERCHKEPISTIIY---RADQALYVAKKSGRNRVV 256 +++T S G A KE + +++ RADQ LY AK GR+RVV Sbjct: 365 REMNLTASLGAA--AVKEGDADLLHVLKRADQRLYAAKSGGRDRVV 408 >gi|162149427|ref|YP_001603888.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus PAl 5] gi|161788004|emb|CAP57608.1| putative signalling protein, GGDEF family [Gluconacetobacter diazotrophicus PAl 5] Length = 692 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 11/185 (5%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSL-------GSYNEKLSIVFFDIDYFKQI 142 + E + RI+ L+ D L+GL N + F +L S ++++++ D+D FK+I Sbjct: 244 ITERLRAEARITYLAHHDSLTGLANRAWFTEALDRALTLAASGTQRVAVIGIDLDKFKEI 303 Query: 143 NDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 ND GH VGD+V+ L+ ++ V V RLGG+EFAAA E L + Sbjct: 304 NDQHGHAVGDQVLVTLAARIRDVLEDDELVARLGGDEFAAAKRFDDMAELNAFIGRLEEC 363 Query: 203 IENSQINISSGPSIHITISAGIAERCHK-EPISTIIYRADQALYVAKKSGRNRVVCFSDI 261 + SQ G + S G++ E + ++ AD A+Y AK + R VCF + Sbjct: 364 L--SQPIGVDGFELRPNASIGVSLYPRDAETVEALMGDADLAMYRAKGALREH-VCFYEA 420 Query: 262 ENNTC 266 E + Sbjct: 421 EMDEA 425 >gi|576657|gb|AAA86986.1| ORF3 [Listonella anguillarum] Length = 206 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 13/161 (8%) Query: 107 DCLSGLLNHSAFISSLGSYNEKLS------IVFFDIDYFKQINDNFGHPVGDKVIAFLSD 160 D L+ L N ++ + SY E+ + + D+DYFK+IND +GH GD+V+ LS Sbjct: 44 DPLTDLYNRR-YLDTWFSYQEETTNNKPHLLAIIDVDYFKKINDQYGHEAGDEVLRALST 102 Query: 161 QLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITI 220 L + R GGEEF + + E + +R +E + +G + +T+ Sbjct: 103 ILKQQLRPEDLLMRWGGEEF-VMIISTPEAHIKEVLERIRAQVEQTSF-YWAGQRVPVTV 160 Query: 221 SAG-IAERCHKE---PISTIIYRADQALYVAKKSGRNRVVC 257 S G IAE+ + + + ADQALY AK GRNR + Sbjct: 161 SIGAIAEKSVSKLALSWQSAMESADQALYQAKSEGRNRFIV 201 >gi|71278229|ref|YP_271325.1| GGDEF domain-containing protein [Colwellia psychrerythraea 34H] gi|71143969|gb|AAZ24442.1| GGDEF domain protein [Colwellia psychrerythraea 34H] Length = 1034 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 11/176 (6%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQIND 144 +L + ++ L+ D L+GL N F L + + LS++ DID+FK ND Sbjct: 856 DLIAANKQLEVLTYQDGLTGLYNRRYFDKQLTTEINRHYRQQQSLSLILCDIDHFKLFND 915 Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVG-RLGGEEFAAAALGSSEQEAAILANDLRKII 203 +GH GD + +++ + R GGEEFA +S + + ++A L I Sbjct: 916 LYGHQQGDNCLKRVAECIGTNVARMTDANCRYGGEEFAIILPNTSVEHSTLVAERLCFAI 975 Query: 204 ENSQI-NISSGPSIHITISAGIA--ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 EN +I + S S +T++ G+ K + II AD+ALY+ KK+GRN+VV Sbjct: 976 ENMKILHEKSKTSNFVTLTIGVVTIPPKQKTSVDAIILSADKALYMGKKNGRNKVV 1031 >gi|54301944|ref|YP_131937.1| putative response regulator protein [Photobacterium profundum SS9] gi|46915364|emb|CAG22137.1| putative response regulator protein [Photobacterium profundum SS9] Length = 406 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 77/160 (48%), Gaps = 13/160 (8%) Query: 102 QLSRIDCLSGLLNHSAFISSLGSYNE--KLSIVFFDIDYFKQINDNFGHPVGDKVIAFLS 159 L+ D L+ N F S N + DID FK+IND +GH +GD V+ + Sbjct: 253 HLANKDYLTQTWNRRYFFDQPLSKNHSGPRCLALLDIDSFKKINDTYGHHIGDMVLIEFA 312 Query: 160 DQLVVVFGTPMFVGRLGGEEFAAAALGSS---EQEAAILANDLRKIIENSQINISSGPSI 216 + L F + V R GGEEF S Q L ND I +SQ+NI + SI Sbjct: 313 NTLKNYFSDAL-VARFGGEEFCILYGNSPTVFNQRLEALKND----IADSQLNILNN-SI 366 Query: 217 HITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 TISAG+ + +I RAD+ LY AK +GRN +V Sbjct: 367 RYTISAGVVN--ADSNVHDLISRADKCLYKAKANGRNLIV 404 >gi|238785892|ref|ZP_04629859.1| hypothetical protein yberc0001_19120 [Yersinia bercovieri ATCC 43970] gi|238713213|gb|EEQ05258.1| hypothetical protein yberc0001_19120 [Yersinia bercovieri ATCC 43970] Length = 467 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 11/177 (6%) Query: 90 LKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEK-------LSIVFFDIDYFKQI 142 + EL S + + LS+ D L+G+ N F +K LS++ D D FK Sbjct: 285 ITELKQSESILKALSQTDVLTGVANRRHFDDLYQHIWQKNRIEGGTLSVLMIDFDNFKSF 344 Query: 143 NDNFGHPVGDKVIAFLSDQLVV-VFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRK 201 ND +GH +GD + + + L + G + R GGEEF S+ +A +A +R Sbjct: 345 NDLYGHAMGDVCLKSIVETLSKSIRGGSDILARYGGEEFIVLLAPSTPADAKAIAERMRH 404 Query: 202 IIENSQINISSGPSIHITISAGIAE-RCHKEPISTIIYR--ADQALYVAKKSGRNRV 255 IE I P +TIS G+A E I+ + AD+ALY AK SG+NR+ Sbjct: 405 SIEELDIPHGMSPQGRVTISVGVASISAPDEHIAAMDLSDAADKALYRAKASGKNRI 461 >gi|330806852|ref|YP_004351314.1| diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374960|gb|AEA66310.1| Putative diguanylate cyclase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 308 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 4/131 (3%) Query: 129 LSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSS 188 ++ + DID FK IND +GH GD V+ +++ V GR+GGEEFAA G + Sbjct: 179 MAFLLLDIDDFKVINDTYGHQEGDTVLQRIAESGRSVLRRGDLFGRIGGEEFAAVFPGCA 238 Query: 189 EQEAAILANDLRKIIENSQINISSGP-SIHITISAGIAE-RCHKEPISTIIYRADQALYV 246 A +A L++ I+ ++ SG IT+S G+ + + ++ RAD A+Y Sbjct: 239 PDMALQVAERLQREIQ--RLAFRSGERGFGITVSQGLTGITADDQSLDSLFARADAAMYE 296 Query: 247 AKKSGRNRVVC 257 AK+ G+NR++ Sbjct: 297 AKRQGKNRIIA 307 >gi|294626944|ref|ZP_06705535.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598804|gb|EFF42950.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 296 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 96/211 (45%), Gaps = 14/211 (6%) Query: 48 IFLFYIGLTPFYGLE--YILVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSR 105 +FL G P LE E LSL + ++ + L SI L YNR Sbjct: 86 LFLSAAGPGPMPRLEIAEAAAEQLSLALSNLRLRESL--RRQSIRDALTGLYNR------ 137 Query: 106 IDCLSGLLNHSAFISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVV 165 L L+H ++ LS++ D+D+FKQ ND+ GH GD ++A + + L+ Sbjct: 138 -RYLEESLSHE--LARCARRGLPLSVLMLDVDHFKQFNDSQGHAGGDLLLAAVGELLLTR 194 Query: 166 FGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIA 225 R GGEEF + +EA +A +R I ++ + +T S G+A Sbjct: 195 LRAEDVACRYGGEEFTVLLPEADGEEAMRVAEQIRGYIAALAVSDGARALPKVTASIGVA 254 Query: 226 E-RCHKEPISTIIYRADQALYVAKKSGRNRV 255 E +++I +AD ALY AK +GRNRV Sbjct: 255 SFPVDGEQGASLIQKADAALYRAKHAGRNRV 285 >gi|157376756|ref|YP_001475356.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] gi|157319130|gb|ABV38228.1| diguanylate cyclase [Shewanella sediminis HAW-EB3] Length = 341 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 12/173 (6%) Query: 91 KELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQIN 143 K+L + + R L+ +D L+ L N F I + + LS++ DID+FK+ N Sbjct: 167 KKLVLQFRR---LALVDGLTQLSNRRQFDTILEQEIRAAERNHNPLSLIMMDIDFFKRFN 223 Query: 144 DNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILANDLRKI 202 D+ GH GD+ + ++ L P V R GGEEF + Q AA +A R Sbjct: 224 DSAGHSAGDECLVAVAQVLTETVKRPRDVVSRYGGEEFVIVLPSTDLQGAARVAEATRSA 283 Query: 203 IENSQI-NISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 + + I + +S S +T+S G+ + +I AD+ LY AK++GR++ Sbjct: 284 LMSRAIPHPASDVSPCVTMSQGVCQWQSGMSSEALIIAADELLYRAKQAGRDQ 336 >gi|146284341|ref|YP_001174494.1| GGDEF family protein [Pseudomonas stutzeri A1501] gi|145572546|gb|ABP81652.1| GGDEF family protein [Pseudomonas stutzeri A1501] Length = 400 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 10/236 (4%) Query: 27 FMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYILVENLSLVIISITISLLLGYIS 86 F + + ++++ A +I +A++ + + LTP E+ + +S ++ + I + Y+ Sbjct: 156 FFLGVTFWWALLCAVLIVVADVLIAGLILTPEQMPEHWIA--VSYYLLLLIIGAISRYVH 213 Query: 87 GSILKELFISYNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYF 139 ++ F+ + ++ D LSGL N + I+ + LS++ D+D F Sbjct: 214 EYSQRDQFLMRKLLGWVAEHDALSGLANRRSHDLALRQRIAQARRDRQPLSLLLLDLDDF 273 Query: 140 KQINDNFGHPVGDKVIAFLSDQLVVVFGTPM-FVGRLGGEEFAAAALGSSEQEAAILAND 198 K ND FGHP GD +I + + P+ R+GGEEFA A +A Sbjct: 274 KAYNDTFGHPAGDALIRSFGELVAKFARRPLDQAARVGGEEFALLLYNCDNAAAQRIARQ 333 Query: 199 LRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNR 254 L + ++ P+ + +S G+A + + + AD ALY AK +G+NR Sbjct: 334 LVAALAALEVRHPRDPASRVGVSIGVATLQDGQQAEQLYHNADMALYQAKTTGKNR 389 >gi|90418218|ref|ZP_01226130.1| conserved hypothetical protein with GGDEF domain [Aurantimonas manganoxydans SI85-9A1] gi|90337890|gb|EAS51541.1| conserved hypothetical protein with GGDEF domain [Aurantimonas manganoxydans SI85-9A1] Length = 386 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 19/179 (10%) Query: 98 NRISQLSRIDCLSGLLNHSAFISSL----GSYNEKL---SIVFFDIDYFKQINDNFGHPV 150 +++ L+ D ++GL N S F + L G+ K +++ D+D FK IND +GH Sbjct: 208 DKMRYLAEYDVMTGLANRSQFQTRLADLEGTTAGKRPVGALLLIDLDGFKAINDTYGHAF 267 Query: 151 GDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINI 210 GD + + +L V V R+GG+EF A LGS A+ + + + +++ Sbjct: 268 GDVCLKATATRLRQVCDDAELVARIGGDEF-AVLLGSHRDAVAV------ETLAATIVDL 320 Query: 211 SSGPSIHIT-----ISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRVVCFSDIENN 264 +GP+ T S GIA T+ RAD ALY AK SGRN FS N Sbjct: 321 LNGPAADGTASDLGASVGIAMAEAGMAPDTLFCRADSALYAAKASGRNAYRMFSSTMQN 379 >gi|320354615|ref|YP_004195954.1| PAS/PAC sensor-containing diguanylate cyclase and hemerythrin-like metal-binding domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320123117|gb|ADW18663.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like metal-binding domain protein [Desulfobulbus propionicus DSM 2032] Length = 773 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 12/171 (7%) Query: 100 ISQLSRIDCLSGLLNHSAFISSLGS--YNEK-----LSIVFFDIDYFKQINDNFGHPVGD 152 + Q++ D L+GL N + L +N + ++I+F D+D FK +ND +GH GD Sbjct: 453 LEQMAYHDRLTGLANRALLFDRLSQALFNARRKQTMVAILFIDLDGFKGVNDQYGHDAGD 512 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAA--ALGSSEQEAAILANDLRKIIENSQINI 210 V+ ++++ + V R GG+EF L ++ EA ++A +L + + I + Sbjct: 513 LVLKTIAERFLARVRATDTVARTGGDEFVIVLNELNRAD-EAGLVAQNLLEAVA-PDIAL 570 Query: 211 SSGPSIHITISAGIAERCHKE-PISTIIYRADQALYVAKKSGRNRVVCFSD 260 +SG + + S GI+ H + T++ AD A+Y AKK+G+N+ V D Sbjct: 571 ASGTTCRVGASIGISLFPHDGIDMDTLLMAADAAMYQAKKAGKNQTVFADD 621 >gi|265985630|ref|ZP_06098365.1| diguanylate cyclase [Brucella sp. 83/13] gi|264664222|gb|EEZ34483.1| diguanylate cyclase [Brucella sp. 83/13] Length = 266 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 98 NRISQLSRIDCLSGLLNHSAF--ISSLGSYNEKL---SIVFFDIDYFKQINDNFGHPVGD 152 N + + D L+GLLN + L + + ++ DID+FK IND +GHPVGD Sbjct: 87 NELQRARDSDPLTGLLNRRGLERQADLRLHTPQCLSYGVIIADIDHFKAINDAYGHPVGD 146 Query: 153 KVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQIN-IS 211 +V+ + L VGR+GGEEF G++E E L N L ++ + + Sbjct: 147 QVLVEFARILSSASKDHAIVGRVGGEEFVLLVSGTAE-ECEALGNRLCGLVARHAFSKLP 205 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYRADQALYVAKKSGRNRV 255 +G +T S GIA E + RAD AL K GRNRV Sbjct: 206 AGQK--VTSSFGIAMVRSGETLWETAARADLALMRVKNLGRNRV 247 >gi|322419612|ref|YP_004198835.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] gi|320125999|gb|ADW13559.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] Length = 538 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 11/175 (6%) Query: 88 SILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFK 140 ++ K ++ ++ ++ D L+GL N + L + +K+++++ D+D+FK Sbjct: 80 TMTKAAELAIQQMWYMAEHDVLTGLPNRTLLADRLSQSIAFAQRHGKKVALMYLDLDHFK 139 Query: 141 QINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLR 200 +ND+ GH VGD+++ ++ +L V R GG+EF E + A+L + Sbjct: 140 HVNDSLGHSVGDQLLQSVAKRLRASVRLSDTVSRQGGDEFVVLLNEIDEAQDAVLI--AK 197 Query: 201 KIIEN-SQINISSGPSIHITISAGIA-ERCHKEPISTIIYRADQALYVAKKSGRN 253 KII + + S +H+T+S GI+ + T++ AD A+Y KK+GRN Sbjct: 198 KIIAAMAPPHFVSDNQLHVTVSIGISIYPDDGRDVETLLRNADTAMYQTKKTGRN 252 >gi|241766460|ref|ZP_04764331.1| diguanylate cyclase/phosphodiesterase [Acidovorax delafieldii 2AN] gi|241363333|gb|EER58859.1| diguanylate cyclase/phosphodiesterase [Acidovorax delafieldii 2AN] Length = 632 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 17/173 (9%) Query: 98 NRISQLSRIDCLSGLLNHSAF----------ISSLGSYNEKLSIVFFDIDYFKQINDNFG 147 NR+ L+ D ++G N AF S+LGS +L++++ D+D FK +ND FG Sbjct: 203 NRLHALAHTDAVTGTGNRHAFNERLAAEILRASNLGS---RLALIYIDLDNFKTLNDTFG 259 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAA-AALGSSEQEAAILANDLRKIIENS 206 H GD ++ ++ +L + RLGG+EFA L +++ + I +++ Sbjct: 260 HAAGDGLLRQVAVRLRSAVRAGDSISRLGGDEFAVILRLDMNDETLTRYGQRIVDIFQST 319 Query: 207 QINISSGPSIHITISAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCF 258 + G + +T SAGIA +++ AD A+Y AK+ G+NR V F Sbjct: 320 YTEV--GQQVSVTCSAGIATFPDDASDRDSLVSNADTAMYRAKEMGKNRCVRF 370 >gi|239814969|ref|YP_002943879.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110] gi|239801546|gb|ACS18613.1| diguanylate cyclase with PAS/PAC sensor [Variovorax paradoxus S110] Length = 1026 Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 11/136 (8%) Query: 99 RISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHPVG 151 ++ L+RID L+GL N AF I+ L+++F DIDYFK IND GH G Sbjct: 856 KLIDLARIDTLTGLANRLAFNEFLPGAIARAQRSGNALAVLFLDIDYFKTINDTLGHATG 915 Query: 152 DKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIEN-SQINI 210 D V+ + +L+ + V RL G+EF +EAA+ RKI+E + Sbjct: 916 DGVLVEYAQRLLASVRSTDTVARLAGDEFVVVLENVHTREAAVAV--ARKIVERVGTVPF 973 Query: 211 S-SGPSIHITISAGIA 225 G S+++T S GIA Sbjct: 974 ELDGRSLNVTTSIGIA 989 >gi|149189378|ref|ZP_01867663.1| GGDEF family protein [Vibrio shilonii AK1] gi|148836736|gb|EDL53688.1| GGDEF family protein [Vibrio shilonii AK1] Length = 511 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 14/190 (7%) Query: 78 ISLLLGYISGSILKELFISYNRISQLSR-------IDCLSGLLNHSAFISSLGSY----N 126 IS+LL Y+ +L+E +S+ +R D L+ + N AF + L Y N Sbjct: 323 ISILLAYVVQLMLREQRRLTKLVSRRTRDLQYLVERDPLTEVYNRRAF-NRLADYHISCN 381 Query: 127 EKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG 186 + S+V DID FKQIND +GH GD+++ ++ + + RLGG+EFA + Sbjct: 382 KPFSLVIIDIDKFKQINDKYGHVSGDEILMQVAAYIKAQLYPDDMLFRLGGDEFAVISRC 441 Query: 187 SSEQEAAILANDLRKIIENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYV 246 E+ I N++ + I + + + P+ T+S G A E + ++ RAD LY Sbjct: 442 VDEELLNIYLNEVCEDISFMKWD-TIDPNFVCTLSIG-ASVFRGESLEKLMNRADDLLYR 499 Query: 247 AKKSGRNRVV 256 +K GRNR + Sbjct: 500 SKDKGRNRAM 509 >gi|189426658|ref|YP_001953835.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] gi|189422917|gb|ACD97315.1| response regulator receiver modulated diguanylate cyclase [Geobacter lovleyi SZ] Length = 310 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 12/165 (7%) Query: 102 QLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKV 154 +LS D L+GL N + +L + +++++ DID+FK++ND GH GD V Sbjct: 140 ELSNTDHLTGLFNRRFLMEALDKEVQRARRKDGQVALLLMDIDHFKRVNDTHGHLQGDVV 199 Query: 155 IAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQINISSGP 214 + ++ + + R GGEEF A +S +EA +A+ +R ++ S Sbjct: 200 LQKVALHIQKELRSYDIAARYGGEEFVAVLPDTSLKEAFNVADRIRLSVQGMHF-AGSLA 258 Query: 215 SIHITISAGIA---ERCHKEPISTIIYRADQALYVAKKSGRNRVV 256 + +T+S G+A C + I ++ AD+ALY AK+ GRNRV+ Sbjct: 259 NERVTVSLGVALFPSPCFDD-IDGLLRAADEALYQAKERGRNRVI 302 >gi|34498028|ref|NP_902243.1| transmembrane protein [Chromobacterium violaceum ATCC 12472] gi|34332837|gb|AAQ60243.2| probable transmembrane protein [Chromobacterium violaceum ATCC 12472] Length = 938 Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 14/163 (8%) Query: 101 SQLSRIDCLSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDK 153 SQ+++ D ++GLLN +AF+ L + L+++F DID+FKQ+ND GH GD+ Sbjct: 772 SQVTQ-DAMTGLLNRAAFMDILNDEIKHHYLKRQALALLFLDIDHFKQVNDTLGHAAGDE 830 Query: 154 VIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ--EAAILANDLRKIIENSQINIS 211 +I + +L V RLGG+EF +G + A++ + + ++++ Sbjct: 831 LIKIFARRLRQNVRGTDHVARLGGDEFVVLLVGLDAECTATAVVDKLMAAVCRDAEL--- 887 Query: 212 SGPSIHITISAGIAERCHKEPISTIIYR-ADQALYVAKKSGRN 253 +G ++ S G+A + + + AD+ LY AK +GRN Sbjct: 888 AGKPHRVSTSIGVAYAYMPDITPERLLKIADEGLYQAKSAGRN 930 >gi|325283596|ref|YP_004256137.1| diguanylate cyclase [Deinococcus proteolyticus MRP] gi|324315405|gb|ADY26520.1| diguanylate cyclase [Deinococcus proteolyticus MRP] Length = 472 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 17/173 (9%) Query: 92 ELFISYNRISQLSRIDCLSGLLNHSAFI----SSLGSYNEKLSIVFFDIDYFKQINDNFG 147 EL S + L+ D L+GL N ++F+ SLG+ NE + D++ FKQIND FG Sbjct: 307 ELEASRQELEHLAYHDVLTGLSNRASFVHFCEGSLGA-NEPYVVFSLDLNGFKQINDTFG 365 Query: 148 HPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALG-----SSEQEAAILANDLRKI 202 H VGD+++ + QL P V R GG+EF G ++ A ++A ++R Sbjct: 366 HAVGDRMLQHAAQQLARTVAAPGRVFRWGGDEFVIVVPGVQRSADADALARLIAVNIRTP 425 Query: 203 IENSQINISSGPSIHITISAGIAERCHKEPISTIIYRADQALYVAK-KSGRNR 254 + +S G S+ + G T++ AD +Y K +SG +R Sbjct: 426 MNYRGHQLSVGTSVGYALGRG------NRNYETLLSLADDDMYSGKQRSGNSR 472 >gi|307297450|ref|ZP_07577256.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thermotogales bacterium mesG1.Ag.4.2] gi|306916710|gb|EFN47092.1| diguanylate cyclase with PAS/PAC and GAF sensors [Thermotogales bacterium mesG1.Ag.4.2] Length = 782 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 17/172 (9%) Query: 97 YNRISQLSRIDCLSGLLNHSAF-------ISSLGSYNEKLSIVFFDIDYFKQINDNFGHP 149 + + LS D L+G N I Y+ K+ ++ FDID FK +ND GH Sbjct: 610 HEEVRDLSVRDYLTGAYNRRGLFEHGEREIEKAKRYDTKMGLIMFDIDNFKNMNDMLGHL 669 Query: 150 VGDKVIAFLSDQLVVVFGTPMFVGRLGGEEF----AAAALGSSEQEAAILANDLRKIIEN 205 GD V+ +++ + R GG+EF + ++E+ A + L E+ Sbjct: 670 AGDFVLKRVANICTKILRAADIFARYGGDEFIILLPMTDITNTEEAATRICRSL----ED 725 Query: 206 SQINISSGPSIHITISAGIAE-RCHKEPISTIIYR