RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781079|ref|YP_003065492.1| diguanylate cyclase
[Candidatus Liberibacter asiaticus str. psy62]
         (266 letters)



>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal
           domain {Caulobacter crescentus [TaxId: 155892]}
          Length = 162

 Score = 77.9 bits (190), Expect = 7e-16
 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 9/160 (5%)

Query: 109 LSGLLNHSAFISSLGS-------YNEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFLSDQ 161
           L+GL N       L S         + +S +  DID+FK+IND FGH +GD+V+   + +
Sbjct: 1   LTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALR 60

Query: 162 LVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIENSQ-INISSGPSIHITI 220
           L           R GGEEF      ++  +A  +A  +R  +  S          +++TI
Sbjct: 61  LASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTI 120

Query: 221 SAGIAE-RCHKEPISTIIYRADQALYVAKKSGRNRVVCFS 259
           S G++      +    ++ RAD+ +Y AK SGRN VV  +
Sbjct: 121 SIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKA 160


>d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening
           dioxygenase LigAB {Pseudomonas paucimobilis [TaxId:
           13689]}
          Length = 298

 Score = 26.9 bits (59), Expect = 1.8
 Identities = 13/66 (19%), Positives = 21/66 (31%)

Query: 145 NFGHPVGDKVIAFLSDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQEAAILANDLRKIIE 204
             G  +   V +F  D  V V+GT     +L G                 L +D  ++ +
Sbjct: 166 ALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRAGLINKEFDLNFIDKLISDPEELSK 225

Query: 205 NSQINI 210
              I  
Sbjct: 226 MPHIQY 231


>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
           [TaxId: 1639]}
          Length = 199

 Score = 26.2 bits (56), Expect = 3.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 90  LKELFISYNRISQLSRIDCLSGL 112
           L+ L IS N++S +S +  L+ L
Sbjct: 174 LERLDISSNKVSDISVLAKLTNL 196


>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
           [TaxId: 1639]}
          Length = 384

 Score = 25.7 bits (55), Expect = 4.0
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 90  LKELFISYNRISQLSRIDCLSGL 112
           L+ LF + N++S +S +  L+ +
Sbjct: 331 LQRLFFANNKVSDVSSLANLTNI 353



 Score = 25.3 bits (54), Expect = 4.8
 Identities = 15/117 (12%), Positives = 39/117 (33%), Gaps = 11/117 (9%)

Query: 5   LKDFLSIWLCHEKNLESFSPHTFMIYFSIFFSIFIATVIFIANIFLFYIGLTPFYGLEYI 64
           + +   +           + +       I     +  +    N       ++    L+ +
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 334

Query: 65  LVENLSLVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGL----LNHSA 117
              N  +  +S +++ L      + +  L   +N+IS L+ +  L+ +    LN  A
Sbjct: 335 FFANNKVSDVS-SLANL------TNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 384


>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
           [TaxId: 1639]}
          Length = 227

 Score = 25.0 bits (53), Expect = 6.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 90  LKELFISYNRISQLSRIDCLSGL 112
           L E+ +  N+IS +S +   S L
Sbjct: 197 LIEVHLKNNQISDVSPLANTSNL 219


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.409 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 981,608
Number of extensions: 45832
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 15
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.0 bits)