Query gi|254781080|ref|YP_003065493.1| hypothetical protein CLIBASIA_04910 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 85
No_of_seqs 100 out of 205
Neff 3.6
Searched_HMMs 13730
Date Wed Jun 1 11:20:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781080.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a9xa1 a.92.1.1 (A:403-555) C 36.2 14 0.0011 16.3 8.4 59 15-83 59-122 (153)
2 d2axpa1 c.37.1.1 (A:2-165) Hyp 19.8 22 0.0016 15.1 1.6 36 45-80 101-136 (164)
3 d1ivsa1 a.2.7.3 (A:797-862) Va 16.9 33 0.0024 14.0 4.2 63 18-80 4-66 (66)
4 d1okkd2 c.37.1.10 (D:97-303) G 16.3 8.5 0.00062 17.7 -1.2 45 4-48 43-91 (207)
5 d2qy9a2 c.37.1.10 (A:285-495) 14.9 13 0.00092 16.6 -0.6 43 6-48 49-94 (211)
6 d1b0na1 a.34.1.1 (A:74-108) Si 13.8 36 0.0026 13.7 1.5 13 6-18 15-27 (35)
7 d1xrha_ c.122.1.1 (A:) Ureidog 13.7 40 0.0029 13.4 3.6 49 6-54 2-50 (343)
8 d1p4ea1 a.60.9.1 (A:2-129) Flp 12.0 16 0.0011 16.0 -0.8 20 10-29 12-31 (128)
9 d1lvaa3 a.4.5.35 (A:511-574) C 11.9 45 0.0033 13.1 5.2 40 25-67 3-42 (64)
10 d2dt5a1 a.4.5.38 (A:4-77) Tran 11.0 45 0.0033 13.1 1.3 15 42-56 55-69 (74)
No 1
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=36.19 E-value=14 Score=16.26 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999999-----999999998758987999999999961899999999999999999859886
Q gi|254781080|r 15 TFIERLERLEEEKKLLTE-----NIKDIYGEAKATGFDVKAIKKILSLRKKDEKQWMEEEQILDVYLRALGMLK 83 (85)
Q Consensus 15 ~~IERIErLeeEkk~i~~-----dikdVyaEAK~~GfD~K~lr~IiklRk~d~~er~E~e~iLd~Y~~ALGm~~ 83 (85)
=|+++|+++-+--+.+.. --.+.+-+||..||.=+-+ -++......+ +--++..+|+.|
T Consensus 59 WFL~qi~~Iv~~E~~l~~~~~~~l~~~~l~~aK~~GFSD~~i---a~l~~~~e~~-------vr~~R~~~~i~p 122 (153)
T d1a9xa1 59 WFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARL---AKLAGVREAE-------IRKLRDQYDLHP 122 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHTTCCHHHH---HHHTTSCHHH-------HHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHH---HHHHCCCHHH-------HHHHHHHCCCCC
T ss_conf 999999999999866531476648999999999838878988---9887286999-------999999726888
No 2
>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}
Probab=19.77 E-value=22 Score=15.12 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 987999999999961899999999999999999859
Q gi|254781080|r 45 GFDVKAIKKILSLRKKDEKQWMEEEQILDVYLRALG 80 (85)
Q Consensus 45 GfD~K~lr~IiklRk~d~~er~E~e~iLd~Y~~ALG 80 (85)
--||-++++-++.|--.--+-..-+.+|++|+..+.
T Consensus 101 hadpsvikkrlrvrgdeyiegkdidsilelyrevms 136 (164)
T d2axpa1 101 HADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMS 136 (164)
T ss_dssp ECCHHHHHHHHHHHTCSSCCSSHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 469189787860056541345777899999999984
No 3
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=16.87 E-value=33 Score=13.97 Aligned_cols=63 Identities=22% Similarity=0.234 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999999998758987999999999961899999999999999999859
Q gi|254781080|r 18 ERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDEKQWMEEEQILDVYLRALG 80 (85)
Q Consensus 18 ERIErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~IiklRk~d~~er~E~e~iLd~Y~~ALG 80 (85)
.-++||.-+...+...+.-+-.--...+|--|+=..||.--+..-.+...+-.-+.-.+.-||
T Consensus 4 ~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~~Lg 66 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQIG 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 799989989999999999999888780787769899999999999999999999999998609
No 4
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=16.33 E-value=8.5 Score=17.74 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=27.8
Q ss_pred HHHHC-CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 24310-08999999999999---99999999999999999987589879
Q gi|254781080|r 4 NIQNV-TQDQLRTFIERLER---LEEEKKLLTENIKDIYGEAKATGFDV 48 (85)
Q Consensus 4 ~~~~v-a~~~Lr~~IERIEr---LeeEkk~i~~dikdVyaEAK~~GfD~ 48 (85)
+++.+ +.+||++|.+++.- .-.+..+.....++....++.++||.
T Consensus 43 Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~~~~~~d~ 91 (207)
T d1okkd2 43 DTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKARGYDL 91 (207)
T ss_dssp CCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSE
T ss_pred CCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 3666540266764054568238961677427889999899999879999
No 5
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=14.95 E-value=13 Score=16.64 Aligned_cols=43 Identities=23% Similarity=0.190 Sum_probs=28.9
Q ss_pred HHCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 3100899999999999---999999999999999999987589879
Q gi|254781080|r 6 QNVTQDQLRTFIERLE---RLEEEKKLLTENIKDIYGEAKATGFDV 48 (85)
Q Consensus 6 ~~va~~~Lr~~IERIE---rLeeEkk~i~~dikdVyaEAK~~GfD~ 48 (85)
-.-+.+||++|.+++. .......++..-+++....|+.++||.
T Consensus 49 R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a~~~~~d~ 94 (211)
T d2qy9a2 49 RAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDV 94 (211)
T ss_dssp CHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 6661204555434338862113568779999999999998769988
No 6
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=13.78 E-value=36 Score=13.70 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=9.0
Q ss_pred HHCCHHHHHHHHH
Q ss_conf 3100899999999
Q gi|254781080|r 6 QNVTQDQLRTFIE 18 (85)
Q Consensus 6 ~~va~~~Lr~~IE 18 (85)
.||+.+|.|-|+|
T Consensus 15 SGvSK~QFrEfle 27 (35)
T d1b0na1 15 SGVSKKQFREFLD 27 (35)
T ss_dssp SCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
T ss_conf 4677999999999
No 7
>d1xrha_ c.122.1.1 (A:) Ureidoglycolate dehydrogenase AllD {Escherichia coli [TaxId: 562]}
Probab=13.68 E-value=40 Score=13.44 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=36.4
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 3100899999999999999999999999999999987589879999999
Q gi|254781080|r 6 QNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKI 54 (85)
Q Consensus 6 ~~va~~~Lr~~IERIErLeeEkk~i~~dikdVyaEAK~~GfD~K~lr~I 54 (85)
..++.++|++|+.++=.---=-..-+..+-++..+|-..|.+..=+..+
T Consensus 2 tri~~~~l~~~~~~~l~~~G~~~~~A~~vA~~Lv~Adl~G~~SHGl~rl 50 (343)
T d1xrha_ 2 SKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRV 50 (343)
T ss_dssp EEECHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCGGGTGGGH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 8578999999999999986999999999999999987589747769899
No 8
>d1p4ea1 a.60.9.1 (A:2-129) Flp recombinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.97 E-value=16 Score=16.02 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999
Q gi|254781080|r 10 QDQLRTFIERLERLEEEKKL 29 (85)
Q Consensus 10 ~~~Lr~~IERIErLeeEkk~ 29 (85)
.--.|+|+||.||-.-||-+
T Consensus 12 kvlvrqfverferpsgekia 31 (128)
T d1p4ea1 12 KVLVRQFVERFERPSGEKIA 31 (128)
T ss_dssp HHHHHHHHHTTTTTCHHHHT
T ss_pred HHHHHHHHHHHCCCCCCHHH
T ss_conf 89999999984178844688
No 9
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=11.89 E-value=45 Score=13.10 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHH
Q ss_conf 9999999999999999875898799999999996189999999
Q gi|254781080|r 25 EEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDEKQWME 67 (85)
Q Consensus 25 eEkk~i~~dikdVyaEAK~~GfD~K~lr~IiklRk~d~~er~E 67 (85)
++-..+...|..+|.++ ||.|..+|.+...-..+..+..+
T Consensus 3 ~~q~~l~~~I~~~~~~~---g~~PP~vrdl~~~l~~~e~~~~~ 42 (64)
T d1lvaa3 3 ETQKKLLKDLEDKYRVS---RWQPPSFKEVAGSFNLDPSELEE 42 (64)
T ss_dssp HHHHHHHHHHHHHHHHH---TTSCCBHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC---CCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 89999999999999986---99999599999891999999999
No 10
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=11.01 E-value=45 Score=13.11 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=10.3
Q ss_pred HHCCCCHHHHHHHHH
Q ss_conf 758987999999999
Q gi|254781080|r 42 KATGFDVKAIKKILS 56 (85)
Q Consensus 42 K~~GfD~K~lr~Iik 56 (85)
.+.|||++.+.+.|+
T Consensus 55 ~g~GY~V~~L~~~i~ 69 (74)
T d2dt5a1 55 RGVGYTVPVLKRELR 69 (74)
T ss_dssp TTTCEEHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 999901999999999
Done!