RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781080|ref|YP_003065493.1| hypothetical protein
CLIBASIA_04910 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 30.1 bits (68), Expect = 0.11
 Identities = 5/33 (15%), Positives = 15/33 (45%), Gaps = 12/33 (36%)

Query: 50 AIKKILSLRKKDEKQWMEEEQILD-VYLRALGM 81
          ++  ++S+           E +++ V+ R + M
Sbjct: 1  SLADVMSI-----------ESLVEVVFYRGMTM 22


>2pff_A Fatty acid synthase subunit alpha,
          3-oxoacyl-[acyl-carrier-; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 28.7 bits (64), Expect = 0.28
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 9/39 (23%)

Query: 47 DVKAIKKILSLRKKDEKQWMEEEQILDVYLRALGMLKDE 85
          ++K  K+ L  R+   K W+E E         L  LK E
Sbjct: 25 NMKYRKRQLVTREAQIKDWVENE---------LEALKLE 54



 Score = 24.1 bits (52), Expect = 6.8
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 5  IQNVTQDQLRTFIERLERL--EEEKKLLTENIKDIYGEAK 42
          I++  +++L       E +  E++ + L E  ++I+ EA+
Sbjct: 40 IKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAE 79


>3guw_A Uncharacterized protein AF_1765; alpha-beta protein,
           structural genomics, PSI-2, protein structure
           initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} (A:)
          Length = 261

 Score = 25.0 bits (53), Expect = 3.7
 Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 4/41 (9%)

Query: 11  DQLRTFIERLERLEEEKKLLTENIKDIYG----EAKATGFD 47
            +    IE     EE +K+  EN +         A      
Sbjct: 219 AEAAVKIEEAVGREEXEKVARENARKFLRVLEAAALEHHHH 259


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.135    0.357 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 651,728
Number of extensions: 26743
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 54
Length of query: 85
Length of database: 4,956,049
Length adjustment: 48
Effective length of query: 37
Effective length of database: 3,333,409
Effective search space: 123336133
Effective search space used: 123336133
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.6 bits)