RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781080|ref|YP_003065493.1| hypothetical protein
CLIBASIA_04910 [Candidatus Liberibacter asiaticus str. psy62]
(85 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 36.8 bits (85), Expect = 0.001
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 25/80 (31%)
Query: 1 MIDNIQNVTQDQLRTFIERL-ERLEEEKKL------------LTENIKDIYG------EA 41
M+ +I N+TQ+Q++ ++ + L K++ ++ + +YG +A
Sbjct: 338 ML-SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 42 KA-TGFDVKAIKKI-LSLRK 59
KA +G D +I S RK
Sbjct: 397 KAPSGLD---QSRIPFSERK 413
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.0 bits (66), Expect = 0.13
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 24 EEE--KKLLTENIKDIYGEAKATGFDVKA 50
E++ KKL ++K +Y + A +KA
Sbjct: 18 EKQALKKL-QASLK-LYADDSAPALAIKA 44
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 27.5 bits (61), Expect = 0.69
Identities = 6/34 (17%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 39 GEAKATGFDVKAIKKILSLRKKDEKQWMEEEQIL 72
+ +G + A+K++LS ++ + ++E +
Sbjct: 47 AQDVGSGREY-ALKRLLSNEEEKNRAIIQEVCFM 79
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (59), Expect = 1.0
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 24/71 (33%)
Query: 6 QNVTQD-QLRTFIE-RLERL---------EEEKKLLTENIKDIYGEAKATGFDVKAIKKI 54
Q VT++ Q++ ++E LE L E++ + L E ++I+ EA++
Sbjct: 1252 QLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAES----------- 1300
Query: 55 LSLRKKDEKQW 65
LR ++QW
Sbjct: 1301 -QLRAA-QQQW 1309
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase,
apoptosis, ATP-binding, cytoplasm, endoplasmic
reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A
{Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Length = 373
Score = 26.3 bits (57), Expect = 1.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 48 VKAIKKILSLRKKDEKQWMEEEQIL 72
VK ++K L+KK+EK M E +L
Sbjct: 68 VKVLQKKAILKKKEEKHIMSERNVL 92
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding,
lipoprotein, myristate, palmitate, phosphorylation;
HET: STU; 2.6A {Homo sapiens}
Length = 317
Score = 25.1 bits (54), Expect = 3.7
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 39 GEAKATGFDVKAIKKILSLRKKDEKQWMEEEQIL 72
E G A+K+IL ++D ++ E +
Sbjct: 48 VEGLHDGHFY-ALKRILCHEQQDREEAQREADMH 80
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET:
DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB:
1xnh_A
Length = 268
Score = 24.9 bits (53), Expect = 4.1
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 7 NVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDE 62
+ ++ +E L + K + TE + G+D +K I S +K+
Sbjct: 197 GYPYSVIDPLLKDIEALFQTKPIDTETLA-------QLGYDEILVKNITSRIQKNA 245
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 24.9 bits (53), Expect = 4.6
Identities = 5/46 (10%), Positives = 16/46 (34%)
Query: 21 ERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDEKQWM 66
E + +++ + T DV A + + ++ ++
Sbjct: 42 GVTERIRNNAKIDVELFKKIEEKTNHDVVAFVEGIGSMIGEDSRFF 87
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A
{Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A
2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Length = 639
Score = 25.0 bits (54), Expect = 4.8
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 10 QDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDEKQWMEEE 69
Q L T+++ ++ L E++ + I A G + +++ L R++ W+ E
Sbjct: 31 QQTLATYLQCMQHLVPEEQF--RKSQAIVKRFGAPGGLGETLQEKLLERQEKTANWVSEY 88
Query: 70 QILDVYLR 77
+ D+YL
Sbjct: 89 WLNDMYLN 96
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural
protein; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9
PDB: 1v8j_A* 2gry_A*
Length = 410
Score = 24.8 bits (53), Expect = 5.4
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 17 IERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKI-------LSLRKKDEKQWMEEE 69
+E+++ EEK+ ++ + + F ++ + +EE
Sbjct: 12 MEKMKNKREEKRAQNSELRIKRAQEYDSSFPNWEFARMIKEFRVTMECSPLTVTDPIEEH 71
Query: 70 QILDVYLRALGMLKDE 85
+I V +R + K E
Sbjct: 72 RIC-VCVRKRPLNKQE 86
>1s1h_D 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit,
EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A
{Saccharomyces cerevisiae} SCOP: i.1.1.1
Length = 179
Score = 24.1 bits (52), Expect = 8.4
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 21 ERLEEEKKLLTE----NIKDIYGEAKATGFDVKAIKKILSLRKKDEKQWMEEEQILD 73
RL+ E KL E N K+IY + +A + +L+ +KD K+ E ++
Sbjct: 4 SRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIR 60
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 24.1 bits (51), Expect = 8.4
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 17 IERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLR-----KKDEKQW--MEEE 69
I + +RL +E E+I+ E + ++ A K++ KKD ++W + E
Sbjct: 74 IAQADRLTQEP----ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 70 QI 71
Q+
Sbjct: 130 QV 131
>2xgl_A Colicin-M immunity protein; antibiotic, bacterial cell WALL,
bacteriocin immunity, bacte immunity; 2.70A
{Escherichia coli}
Length = 103
Score = 24.0 bits (51), Expect = 9.5
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 7 NVTQDQLRT-----FIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKIL 55
V+ +Q RT +++R++R + + +LL I I E +K L
Sbjct: 11 QVSDEQARTFVKNDYLQRMKRWDNDVQLLGTEIPKITWEKIERSLTDVEDEKTL 64
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular
signal regulated kinase 3, serine phosphorylation,
threonine phosphorylation; 2.25A {Homo sapiens}
Length = 320
Score = 23.7 bits (50), Expect = 9.9
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 39 GEAKATGFDVKAIKKILSLRKKDEKQWMEEEQIL 72
V AIKKI+ + K + E +I+
Sbjct: 30 AVDNDCDKRV-AIKKIVLTDPQSVKHALREIKII 62
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.315 0.135 0.357
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 765,990
Number of extensions: 33699
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 81
Length of query: 85
Length of database: 5,693,230
Length adjustment: 53
Effective length of query: 32
Effective length of database: 4,408,298
Effective search space: 141065536
Effective search space used: 141065536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.3 bits)