RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781080|ref|YP_003065493.1| hypothetical protein CLIBASIA_04910 [Candidatus Liberibacter asiaticus str. psy62] (85 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 36.8 bits (85), Expect = 0.001 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 25/80 (31%) Query: 1 MIDNIQNVTQDQLRTFIERL-ERLEEEKKL------------LTENIKDIYG------EA 41 M+ +I N+TQ+Q++ ++ + L K++ ++ + +YG +A Sbjct: 338 ML-SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396 Query: 42 KA-TGFDVKAIKKI-LSLRK 59 KA +G D +I S RK Sbjct: 397 KAPSGLD---QSRIPFSERK 413 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.0 bits (66), Expect = 0.13 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 4/29 (13%) Query: 24 EEE--KKLLTENIKDIYGEAKATGFDVKA 50 E++ KKL ++K +Y + A +KA Sbjct: 18 EKQALKKL-QASLK-LYADDSAPALAIKA 44 >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337 Score = 27.5 bits (61), Expect = 0.69 Identities = 6/34 (17%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 39 GEAKATGFDVKAIKKILSLRKKDEKQWMEEEQIL 72 + +G + A+K++LS ++ + ++E + Sbjct: 47 AQDVGSGREY-ALKRLLSNEEEKNRAIIQEVCFM 79 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 27.1 bits (59), Expect = 1.0 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 24/71 (33%) Query: 6 QNVTQD-QLRTFIE-RLERL---------EEEKKLLTENIKDIYGEAKATGFDVKAIKKI 54 Q VT++ Q++ ++E LE L E++ + L E ++I+ EA++ Sbjct: 1252 QLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAES----------- 1300 Query: 55 LSLRKKDEKQW 65 LR ++QW Sbjct: 1301 -QLRAA-QQQW 1309 >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373 Score = 26.3 bits (57), Expect = 1.6 Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 48 VKAIKKILSLRKKDEKQWMEEEQIL 72 VK ++K L+KK+EK M E +L Sbjct: 68 VKVLQKKAILKKKEEKHIMSERNVL 92 >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, palmitate, phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317 Score = 25.1 bits (54), Expect = 3.7 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%) Query: 39 GEAKATGFDVKAIKKILSLRKKDEKQWMEEEQIL 72 E G A+K+IL ++D ++ E + Sbjct: 48 VEGLHDGHFY-ALKRILCHEQQDREEAQREADMH 80 >1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Length = 268 Score = 24.9 bits (53), Expect = 4.1 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 7 NVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDE 62 + ++ +E L + K + TE + G+D +K I S +K+ Sbjct: 197 GYPYSVIDPLLKDIEALFQTKPIDTETLA-------QLGYDEILVKNITSRIQKNA 245 >1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Length = 429 Score = 24.9 bits (53), Expect = 4.6 Identities = 5/46 (10%), Positives = 16/46 (34%) Query: 21 ERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDEKQWM 66 E + +++ + T DV A + + ++ ++ Sbjct: 42 GVTERIRNNAKIDVELFKKIEEKTNHDVVAFVEGIGSMIGEDSRFF 87 >1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A* Length = 639 Score = 25.0 bits (54), Expect = 4.8 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 10 QDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDEKQWMEEE 69 Q L T+++ ++ L E++ + I A G + +++ L R++ W+ E Sbjct: 31 QQTLATYLQCMQHLVPEEQF--RKSQAIVKRFGAPGGLGETLQEKLLERQEKTANWVSEY 88 Query: 70 QILDVYLR 77 + D+YL Sbjct: 89 WLNDMYLN 96 >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural protein; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 Score = 24.8 bits (53), Expect = 5.4 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 17 IERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKI-------LSLRKKDEKQWMEEE 69 +E+++ EEK+ ++ + + F ++ + +EE Sbjct: 12 MEKMKNKREEKRAQNSELRIKRAQEYDSSFPNWEFARMIKEFRVTMECSPLTVTDPIEEH 71 Query: 70 QILDVYLRALGMLKDE 85 +I V +R + K E Sbjct: 72 RIC-VCVRKRPLNKQE 86 >1s1h_D 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1 Length = 179 Score = 24.1 bits (52), Expect = 8.4 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Query: 21 ERLEEEKKLLTE----NIKDIYGEAKATGFDVKAIKKILSLRKKDEKQWMEEEQILD 73 RL+ E KL E N K+IY + +A + +L+ +KD K+ E ++ Sbjct: 4 SRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIR 60 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 24.1 bits (51), Expect = 8.4 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 11/62 (17%) Query: 17 IERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLR-----KKDEKQW--MEEE 69 I + +RL +E E+I+ E + ++ A K++ KKD ++W + E Sbjct: 74 IAQADRLTQEP----ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129 Query: 70 QI 71 Q+ Sbjct: 130 QV 131 >2xgl_A Colicin-M immunity protein; antibiotic, bacterial cell WALL, bacteriocin immunity, bacte immunity; 2.70A {Escherichia coli} Length = 103 Score = 24.0 bits (51), Expect = 9.5 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Query: 7 NVTQDQLRT-----FIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKIL 55 V+ +Q RT +++R++R + + +LL I I E +K L Sbjct: 11 QVSDEQARTFVKNDYLQRMKRWDNDVQLLGTEIPKITWEKIERSLTDVEDEKTL 64 >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320 Score = 23.7 bits (50), Expect = 9.9 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%) Query: 39 GEAKATGFDVKAIKKILSLRKKDEKQWMEEEQIL 72 V AIKKI+ + K + E +I+ Sbjct: 30 AVDNDCDKRV-AIKKIVLTDPQSVKHALREIKII 62 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.315 0.135 0.357 Gapped Lambda K H 0.267 0.0589 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 765,990 Number of extensions: 33699 Number of successful extensions: 315 Number of sequences better than 10.0: 1 Number of HSP's gapped: 315 Number of HSP's successfully gapped: 81 Length of query: 85 Length of database: 5,693,230 Length adjustment: 53 Effective length of query: 32 Effective length of database: 4,408,298 Effective search space: 141065536 Effective search space used: 141065536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 50 (23.3 bits)