RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781080|ref|YP_003065493.1| hypothetical protein
CLIBASIA_04910 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga
          maritima [TaxId: 2336]}
          Length = 429

 Score = 24.9 bits (53), Expect = 2.0
 Identities = 5/46 (10%), Positives = 16/46 (34%)

Query: 21 ERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDEKQWM 66
             E  +     +++      + T  DV A  + +     ++ ++ 
Sbjct: 42 GVTERIRNNAKIDVELFKKIEEKTNHDVVAFVEGIGSMIGEDSRFF 87


>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 382

 Score = 24.6 bits (53), Expect = 2.7
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 10 QDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDEKQWMEEE 69
          Q  L T+++ ++ L  E++      + I     A G   + +++ L  R++    W+ E 
Sbjct: 13 QQTLATYLQCMQHLVPEEQF--RKSQAIVKRFGAPGGLGETLQEKLLERQEKTANWVSEY 70

Query: 70 QILDVYLR 77
           + D+YL 
Sbjct: 71 WLNDMYLN 78


>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 377

 Score = 24.2 bits (52), Expect = 3.3
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 10 QDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDEKQWMEEE 69
          Q  L  +++ L+ +  E++    + K +  E +A+G   + ++K L  R +  + W+ E 
Sbjct: 15 QQSLDHYLKALQPIVSEEEW--AHTKQLVDEFQASGGVGERLQKGLERRARKTENWLSEW 72

Query: 70 QILDVYLR 77
           +   YL+
Sbjct: 73 WLKTAYLQ 80


>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
           {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 388

 Score = 24.0 bits (51), Expect = 4.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)

Query: 11  DQLRTFIERLERLEEEKKL 29
           ++L   ++R+ER+ +E+KL
Sbjct: 369 EKLEEAMDRMERVLKERKL 387


>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase
           {Helicobacter pylori [TaxId: 210]}
          Length = 255

 Score = 23.8 bits (50), Expect = 4.1
 Identities = 9/59 (15%), Positives = 21/59 (35%)

Query: 4   NIQNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKKDE 62
            +    +  L      ++ L ++ + L +            G+D   +K I S  +K+ 
Sbjct: 185 FVGQSDEKDLGYPYSVIDPLLKDIEALFQTKPIDTETLAQLGYDEILVKNITSRIQKNA 243


>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
           [TaxId: 4682]}
          Length = 425

 Score = 23.1 bits (49), Expect = 6.0
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 9   TQDQLRTFIERLERLEEEK 27
           TQD     +  L+ + + K
Sbjct: 407 TQDDFDQLMYYLKDMVKAK 425


>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain
          {Caenorhabditis elegans, pjk4 [TaxId: 6239]}
          Length = 350

 Score = 23.1 bits (49), Expect = 6.1
 Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 42 KATGFDVKAIKKILSLRKKDEKQWMEEEQIL 72
          +ATG +  A K +++  + D++   +E Q +
Sbjct: 48 RATGNNF-AAKFVMTPHESDKETVRKEIQTM 77


>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 359

 Score = 23.1 bits (48), Expect = 7.2
 Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 21  ERLEEEKKLLTENIKDIY---GEAKATGFDVKAIKKILSLRKKDEKQW-----MEEEQIL 72
           E+++    +   ++       G  +      + ++K +    + +           E+I 
Sbjct: 291 EKVDTVNHIFGGSLLKFLKELGLYEKVAVSSEELEKWVEKGSRAKHLKNTPGTFTPEKIR 350

Query: 73  DVYLRALG 80
           ++Y  ALG
Sbjct: 351 NIYREALG 358


>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related
           protein {Archaeon Thermoplasma acidophilum [TaxId:
           2303]}
          Length = 229

 Score = 23.0 bits (48), Expect = 7.9
 Identities = 5/19 (26%), Positives = 11/19 (57%)

Query: 10  QDQLRTFIERLERLEEEKK 28
             ++R  ++ +E L  +KK
Sbjct: 211 YIEMRKILKFIEMLGVQKK 229


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.135    0.357 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 332,127
Number of extensions: 14649
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 32
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.1 bits)