BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781080|ref|YP_003065493.1| hypothetical protein
CLIBASIA_04910 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781080|ref|YP_003065493.1| hypothetical protein CLIBASIA_04910 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 85

 Score =  166 bits (420), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 1  MIDNIQNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKK 60
          MIDNIQNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKK
Sbjct: 1  MIDNIQNVTQDQLRTFIERLERLEEEKKLLTENIKDIYGEAKATGFDVKAIKKILSLRKK 60

Query: 61 DEKQWMEEEQILDVYLRALGMLKDE 85
          DEKQWMEEEQILDVYLRALGMLKDE
Sbjct: 61 DEKQWMEEEQILDVYLRALGMLKDE 85


>gi|254780898|ref|YP_003065311.1| hypothetical protein CLIBASIA_03975 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 207

 Score = 24.6 bits (52), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 15/66 (22%)

Query: 35  KDIYGEAKATGFDVK------AIKKILSLRKKDEKQWMEEE---------QILDVYLRAL 79
            +IY  A+  G  ++       IK IL+LR K  + W +EE         Q+++  L A 
Sbjct: 50  HEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSAT 109

Query: 80  GMLKDE 85
             L DE
Sbjct: 110 RELNDE 115


>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 789

 Score = 22.7 bits (47), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query: 65  WMEEEQILDVYLRALGM 81
           + E E+++D + R +GM
Sbjct: 476 YFESEEVMDYFTRCVGM 492


>gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 429

 Score = 21.6 bits (44), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 20  LERLEEEKKLLTENIKDIYGEA 41
           +ER EE+KK+L E+ + +  E 
Sbjct: 331 IERTEEQKKILEESAQFVRPEG 352


>gi|254781081|ref|YP_003065494.1| hypothetical protein CLIBASIA_04915 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 93

 Score = 21.6 bits (44), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 8  VTQDQLRTFIERLERLEEEKKLLTENIK 35
          +T D+L    +R + L   K LL +N+K
Sbjct: 29 ITSDELSDLTQRYDYLLLNKHLLVDNLK 56


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1775

 Score = 21.2 bits (43), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 25  EEKKLLTENIKDIYGEA-KATGFDVKAIKKILSLRKKDEKQWMEEEQILDVYLRALGML 82
           E++KL   N  +  GE  +    D+ A+K I    +K  + W +   + D  +    ML
Sbjct: 916 EKEKLEKRNFGNTLGEHYRGLSTDIVALKNIREWYRKVHQIWKDNSSLDDALINGFLML 974


>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 479

 Score = 21.2 bits (43), Expect = 3.9,   Method: Composition-based stats.
 Identities = 8/13 (61%), Positives = 12/13 (92%)

Query: 51  IKKILSLRKKDEK 63
           +KKI +L+KKD+K
Sbjct: 454 VKKITALQKKDKK 466


>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 246

 Score = 20.4 bits (41), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 8/28 (28%), Positives = 19/28 (67%)

Query: 58 RKKDEKQWMEEEQILDVYLRALGMLKDE 85
          ++K+++   +EEQ+   + R LG+ +D+
Sbjct: 15 KQKNDQPKNKEEQLFFSFPRCLGISRDD 42


>gi|254780226|ref|YP_003064639.1| translation-associated GTPase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 367

 Score = 20.4 bits (41), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 2   IDNIQNVTQDQLRTFIERLERLEEEKK 28
           I++I+ +  + + + +ERLERL E+ K
Sbjct: 123 INDIETIETELMLSDLERLERLFEKNK 149


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.135    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,955
Number of Sequences: 1233
Number of extensions: 1931
Number of successful extensions: 14
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 85
length of database: 328,796
effective HSP length: 54
effective length of query: 31
effective length of database: 262,214
effective search space:  8128634
effective search space used:  8128634
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)