Query gi|254781081|ref|YP_003065494.1| hypothetical protein CLIBASIA_04915 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 93
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 00:22:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781081.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s57_A Nucleoside diphosphate 21.2 28 0.0012 15.6 1.2 29 62-90 102-130 (153)
2 1pu1_A Hypothetical protein MT 20.6 25 0.001 15.9 0.8 34 27-62 59-92 (94)
3 1xiq_A Nucleoside diphosphate 17.5 38 0.0016 14.9 1.2 30 61-90 105-134 (157)
4 3mpd_A Nucleoside diphosphate 17.5 41 0.0017 14.7 1.3 29 62-90 102-130 (151)
5 1wkj_A Nucleoside diphosphate 17.2 41 0.0017 14.7 1.3 28 63-90 99-126 (137)
6 2wx4_A DCP1, decapping protein 17.2 56 0.0023 14.0 2.1 32 35-66 12-44 (46)
7 1dcu_A Fructose-1,6-bisphospha 15.6 34 0.0014 15.1 0.6 27 47-73 240-281 (357)
8 1w7w_A Nucleoside diphosphate 14.6 55 0.0023 14.0 1.4 29 62-90 129-157 (182)
9 1nhk_R Nucleoside diphosphate 14.3 52 0.0022 14.1 1.2 29 62-90 99-127 (144)
10 1k44_A Nucleoside diphosphate 14.3 56 0.0023 14.0 1.4 30 61-90 99-128 (136)
No 1
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=21.23 E-value=28 Score=15.58 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=22.8
Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 99898786207701323204542056652
Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93)
-|++-.+|-.+.....|.||||...-++|
T Consensus 102 p~tiR~~fg~~~~~N~vHgSDs~e~A~rE 130 (153)
T 1s57_A 102 PGTIRGDLAVQTGRNIVHGSDSPENGKRE 130 (153)
T ss_dssp TTSHHHHHCCBTTBCCEEECSSHHHHHHH
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHHHHH
T ss_conf 99807885588774573888999999999
No 2
>1pu1_A Hypothetical protein MTH677; structural genomics, alpha and beta protein (A+B), unknown function; NMR {Methanothermobacterthermautotrophicus} SCOP: d.266.1.1
Probab=20.55 E-value=25 Score=15.91 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 320157788788643677863668898799999999
Q gi|254781081|r 27 DQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKF 62 (93)
Q Consensus 27 dqitsdelsdltqrydylllnkhllvdnlksyldkf 62 (93)
-.+|-||||+++|.----+..... -.+.||+|.|
T Consensus 59 v~it~DeLS~~~~~~V~~aid~aY--~~ldsyiD~~ 92 (94)
T 1pu1_A 59 AELYLDELSDADPGIVDEAVDAAY--RSLESFLDGF 92 (94)
T ss_dssp EEEEECTTCCCCTTHHHHHHHHHH--HHHHHHHHHH
T ss_pred CCEEHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHC
T ss_conf 223447653468889999999999--9999998641
No 3
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP, PSI; 3.05A {Plasmodium falciparum 3D7} SCOP: d.58.6.1
Probab=17.48 E-value=38 Score=14.91 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=24.1
Q ss_pred HHHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 999898786207701323204542056652
Q gi|254781081|r 61 KFGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 61 kfgslisdfhrnseselvrcsdseseeake 90 (93)
+.||+-.+|-.+.....|.||||..+..+|
T Consensus 105 ~p~siR~~fg~~~~~N~vHgSDs~e~A~rE 134 (157)
T 1xiq_A 105 NTGTIRGDFCLEVSKNVIHGSDSVASANKE 134 (157)
T ss_dssp CTTSHHHHHCCBTTBCSEEECSSHHHHHHH
T ss_pred CCCCHHHHHHCCCCCCCEECCCCHHHHHHH
T ss_conf 998917764066476556888999999999
No 4
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi}
Probab=17.46 E-value=41 Score=14.73 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=22.3
Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 99898786207701323204542056652
Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93)
-|++-.+|-.+.-...|.||||.....+|
T Consensus 102 p~tiR~~fg~~~~~N~vHgSDs~e~A~rE 130 (151)
T 3mpd_A 102 VGTIRGDYGVSTGKNIIHGSDCVENAEKE 130 (151)
T ss_dssp TTSHHHHHCCSSTTCSEEECSSHHHHHHH
T ss_pred CCCHHHHHCCCCCCCCEECCCCHHHHHHH
T ss_conf 99836764677686695889999999999
No 5
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=17.23 E-value=41 Score=14.70 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=22.7
Q ss_pred HHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 9898786207701323204542056652
Q gi|254781081|r 63 GSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 63 gslisdfhrnseselvrcsdseseeake 90 (93)
|++-.+|-.+.....|.||||..+-.+|
T Consensus 99 ~siR~~fg~~~~~N~vH~Sds~e~A~~E 126 (137)
T 1wkj_A 99 GTIRGDFATTIDENVIHGSATLEDAQRE 126 (137)
T ss_dssp TSHHHHHCCCSTTCSEEECSSHHHHHHH
T ss_pred CCHHHHHCCCCCCCCEECCCCHHHHHHH
T ss_conf 8748886677674495889999999999
No 6
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=17.16 E-value=56 Score=13.98 Aligned_cols=32 Identities=28% Similarity=0.628 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 878864367786366889879-99999999898
Q gi|254781081|r 35 SDLTQRYDYLLLNKHLLVDNL-KSYLDKFGSLI 66 (93)
Q Consensus 35 sdltqrydylllnkhllvdnl-ksyldkfgsli 66 (93)
..+.|.+.||+-|..-.|..| +.|++.|+..+
T Consensus 12 ~Q~~QAf~YLiknD~eFv~KlHeaYvks~~e~l 44 (46)
T 2wx4_A 12 TQFVQAFTYLIQNDKEFANKLHKAYLNGCSNLL 44 (46)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999997489999999999998888872
No 7
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox regulation, thioredoxin, allostery, hydrolase; 2.20A {Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Probab=15.63 E-value=34 Score=15.12 Aligned_cols=27 Identities=52% Similarity=0.881 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHH---------------HHHHHHHHCCC
Q ss_conf 3668898799999999---------------98987862077
Q gi|254781081|r 47 NKHLLVDNLKSYLDKF---------------GSLISDFHRNS 73 (93)
Q Consensus 47 nkhllvdnlksyldkf---------------gslisdfhrns 73 (93)
|.+..-+.++.|++++ ||++.||||.-
T Consensus 240 n~~~w~~~~~~yi~~~~~~~~~~k~y~~Ry~GsmVaD~hr~L 281 (357)
T 1dcu_A 240 NYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTL 281 (357)
T ss_dssp GGGGSCHHHHHHHHHHHSCCTTSCCCEECBCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHH
T ss_conf 034543889999999722477778654036332058899998
No 8
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=14.62 E-value=55 Score=14.02 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=21.9
Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 99898786207701323204542056652
Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93)
-|++-.+|-.+.-...|.||||..+.++|
T Consensus 129 p~tIRa~fG~~~~rN~vHgSDs~esA~rE 157 (182)
T 1w7w_A 129 PGTIRGDLAVVVGRNIIHGSDGPETAKDE 157 (182)
T ss_dssp TTSHHHHHCCSGGGCCEEECCSHHHHHHH
T ss_pred CCCHHHHHCCCCCCCCEECCCCHHHHHHH
T ss_conf 99807875787674585889999999999
No 9
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R
Probab=14.34 E-value=52 Score=14.14 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=21.7
Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 99898786207701323204542056652
Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93)
-|++-.+|-.+.....|.||||..+-.+|
T Consensus 99 p~siR~~fg~~~~~N~vH~SDs~e~A~rE 127 (144)
T 1nhk_R 99 EGTIRKDFATSIDKNTVHGSDSLENAKIE 127 (144)
T ss_dssp TTSHHHHHCCSSSSCSEEECSSHHHHHHH
T ss_pred CCCHHHHHCCCCCCCCEECCCCHHHHHHH
T ss_conf 99812543577675695788999999999
No 10
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=14.27 E-value=56 Score=13.98 Aligned_cols=30 Identities=30% Similarity=0.415 Sum_probs=23.2
Q ss_pred HHHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 999898786207701323204542056652
Q gi|254781081|r 61 KFGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 61 kfgslisdfhrnseselvrcsdseseeake 90 (93)
+-||+-.+|-.+.....|.||||...-.+|
T Consensus 99 ~p~siR~~fg~~~~~N~vHgSds~e~A~~E 128 (136)
T 1k44_A 99 APGTIRGDFALETQFNLVHGSDSAESAQRE 128 (136)
T ss_dssp CTTSHHHHHCCCSTTCCEEECSSHHHHHHH
T ss_pred CCCCHHHHHCCCCCCCCEECCCCHHHHHHH
T ss_conf 999805775387774397889999999999
Done!