Query gi|254781081|ref|YP_003065494.1| hypothetical protein CLIBASIA_04915 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 93
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:15:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781081.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d9qa_ e.7.1.1 (A:) Fructose- 19.7 14 0.001 15.9 0.6 31 45-75 221-266 (340)
2 d1xiqa_ d.58.6.1 (A:) Nucleosi 17.7 21 0.0015 15.0 1.2 30 61-90 97-126 (149)
3 d1zs6a1 d.58.6.1 (A:18-169) Nu 17.0 25 0.0018 14.6 1.4 29 62-90 101-129 (152)
4 d1k44a_ d.58.6.1 (A:) Nucleosi 15.8 28 0.002 14.3 1.4 29 62-90 99-127 (135)
5 d1w7wa_ d.58.6.1 (A:) Nucleosi 14.3 33 0.0024 13.9 1.4 29 62-90 100-128 (151)
6 d1s57a_ d.58.6.1 (A:) Nucleosi 14.1 31 0.0022 14.1 1.2 29 62-90 102-130 (153)
7 d1u8wa_ d.58.6.1 (A:) Nucleosi 13.4 33 0.0024 13.9 1.2 29 62-90 98-126 (149)
8 d1wkja1 d.58.6.1 (A:1-137) Nuc 12.9 36 0.0027 13.7 1.3 29 62-90 98-126 (137)
9 d2b8qa1 d.58.6.1 (A:2-129) Nuc 12.8 35 0.0025 13.8 1.2 28 63-90 95-122 (128)
10 d1nb2a_ d.58.6.1 (A:) Nucleosi 12.8 31 0.0022 14.1 0.9 29 62-90 98-126 (149)
No 1
>d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=19.66 E-value=14 Score=15.95 Aligned_cols=31 Identities=45% Similarity=0.640 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHH---------------HHHHHHHHCCCCH
Q ss_conf 863668898799999999---------------9898786207701
Q gi|254781081|r 45 LLNKHLLVDNLKSYLDKF---------------GSLISDFHRNSES 75 (93)
Q Consensus 45 llnkhllvdnlksyldkf---------------gslisdfhrnses 75 (93)
-.|.+..-+++|.|++.+ ||++.||||.--.
T Consensus 221 ~~n~~~w~~~~~~yi~~~~~~~~~~~~y~~Ry~GsmVaD~hr~L~~ 266 (340)
T d1d9qa_ 221 EGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLY 266 (340)
T ss_dssp GGGGGGSCHHHHHHHHHHTSCCSSSCCCEECBCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 6104443077999999972437767620035612211058899983
No 2
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Probab=17.72 E-value=21 Score=14.96 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=23.2
Q ss_pred HHHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 999898786207701323204542056652
Q gi|254781081|r 61 KFGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 61 kfgslisdfhrnseselvrcsdseseeake 90 (93)
+.||+-.+|-.......|.||||..+-.+|
T Consensus 97 ~~~siR~~fg~~~~~N~vHgSds~e~A~rE 126 (149)
T d1xiqa_ 97 NTGTIRGDFCLEVSKNVIHGSDSVASANKE 126 (149)
T ss_dssp CTTSHHHHHCCBTTBCSEEECSSHHHHHHH
T ss_pred CCCCCCCCCEECCCCCCEECCCCHHHHHHH
T ss_conf 999835333032366066888999999999
No 3
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]}
Probab=16.97 E-value=25 Score=14.59 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=22.6
Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 99898786207701323204542056652
Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93)
-|++-.+|-.......|.||||..+-.+|
T Consensus 101 p~siR~~fg~~~~~N~vH~Sds~e~A~rE 129 (152)
T d1zs6a1 101 PGTIRGDFCIEVGKNLIHGSDSVESARRE 129 (152)
T ss_dssp TTSHHHHHCCSGGGCSEEECSSHHHHHHH
T ss_pred CHHHHHHHCCCCCCCCEECCCCHHHHHHH
T ss_conf 23454543432667744788999999999
No 4
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.78 E-value=28 Score=14.33 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 99898786207701323204542056652
Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93)
-||+-.+|..+.....|.||||...-.+|
T Consensus 99 p~siR~~yg~~~~~N~vHgSds~~~A~rE 127 (135)
T d1k44a_ 99 PGTIRGDFALETQFNLVHGSDSAESAQRE 127 (135)
T ss_dssp TTSHHHHHCCCSTTCCEEECSSHHHHHHH
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHHHHH
T ss_conf 99837986587565086788999999999
No 5
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]}
Probab=14.27 E-value=33 Score=13.93 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=21.8
Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 99898786207701323204542056652
Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93)
-|++-.+|-.+.-...|.||||..+-.+|
T Consensus 100 p~siR~~fg~~~~~N~vH~Sds~e~A~~E 128 (151)
T d1w7wa_ 100 PGTIRGDLAVVVGRNIIHGSDGPETAKDE 128 (151)
T ss_dssp TTSHHHHHCCSGGGCCEEECCSHHHHHHH
T ss_pred CCCHHHHHCCCCCCCEEECCCCHHHHHHH
T ss_conf 97245764656677602678998999999
No 6
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]}
Probab=14.08 E-value=31 Score=14.09 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=22.0
Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 99898786207701323204542056652
Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93)
-|++-.+|-.+.....|.||||..+-.+|
T Consensus 102 p~tiR~~yg~~~~~N~vHgSds~esA~rE 130 (153)
T d1s57a_ 102 PGTIRGDLAVQTGRNIVHGSDSPENGKRE 130 (153)
T ss_dssp TTSHHHHHCCBTTBCCEEECSSHHHHHHH
T ss_pred CCCCHHHHEEECCCCEEECCCCHHHHHHH
T ss_conf 99820343142467126778998999999
No 7
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=13.36 E-value=33 Score=13.90 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=21.3
Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 99898786207701323204542056652
Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93)
-|++-.+|-...-...|.||||..+-.+|
T Consensus 98 p~tIR~~fg~~~~~N~vH~Sds~e~A~rE 126 (149)
T d1u8wa_ 98 PGTIRGDFAIDIGRNVIHGSDSVESARKE 126 (149)
T ss_dssp TTSHHHHHCCSTTSCSEEECSSHHHHHHH
T ss_pred CCCHHCCCCCCCCCCCEECCCCHHHHHHH
T ss_conf 97500010366453406778998999999
No 8
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]}
Probab=12.86 E-value=36 Score=13.68 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=21.8
Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 99898786207701323204542056652
Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93)
-||+-.+|-.......|.||||..+-.+|
T Consensus 98 p~siR~~yg~~~~~N~vH~Sds~e~A~rE 126 (137)
T d1wkja1 98 PGTIRGDFATTIDENVIHGSATLEDAQRE 126 (137)
T ss_dssp TTSHHHHHCCCSTTCSEEECSSHHHHHHH
T ss_pred CCCHHHHHCCCCCCCCEECCCCHHHHHHH
T ss_conf 98758871466677884678999999999
No 9
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]}
Probab=12.82 E-value=35 Score=13.80 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=20.3
Q ss_pred HHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 9898786207701323204542056652
Q gi|254781081|r 63 GSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 63 gslisdfhrnseselvrcsdseseeake 90 (93)
|++-.+|-.......|.||||...-.+|
T Consensus 95 ~siR~~fg~~~~~N~vH~Sds~~~A~~E 122 (128)
T d2b8qa1 95 GTIRGDLANDIRENLIHASDSEDSAVDE 122 (128)
T ss_dssp TSHHHHHCCCSSCCSEEECCSHHHHHHH
T ss_pred CCHHHHHCCCCCCCCEECCCCHHHHHHH
T ss_conf 7967886477665496888999999999
No 10
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]}
Probab=12.78 E-value=31 Score=14.10 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=21.8
Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH
Q ss_conf 99898786207701323204542056652
Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93)
Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93)
-|++-.+|-.+.....|.||||..+-.+|
T Consensus 98 p~siR~~yg~~~~~N~vH~Sds~e~A~rE 126 (149)
T d1nb2a_ 98 PGTIRGDFGVSAGRNAIHGSDSAGSAAKE 126 (149)
T ss_dssp TTSHHHHSCSCSSSCSEEECSSHHHHHHH
T ss_pred CCHHHHHHEEEECCCEEECCCCHHHHHHH
T ss_conf 51132123052000102679998999999
Done!