Query gi|254781081|ref|YP_003065494.1| hypothetical protein CLIBASIA_04915 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 93 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:15:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781081.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1d9qa_ e.7.1.1 (A:) Fructose- 19.7 14 0.001 15.9 0.6 31 45-75 221-266 (340) 2 d1xiqa_ d.58.6.1 (A:) Nucleosi 17.7 21 0.0015 15.0 1.2 30 61-90 97-126 (149) 3 d1zs6a1 d.58.6.1 (A:18-169) Nu 17.0 25 0.0018 14.6 1.4 29 62-90 101-129 (152) 4 d1k44a_ d.58.6.1 (A:) Nucleosi 15.8 28 0.002 14.3 1.4 29 62-90 99-127 (135) 5 d1w7wa_ d.58.6.1 (A:) Nucleosi 14.3 33 0.0024 13.9 1.4 29 62-90 100-128 (151) 6 d1s57a_ d.58.6.1 (A:) Nucleosi 14.1 31 0.0022 14.1 1.2 29 62-90 102-130 (153) 7 d1u8wa_ d.58.6.1 (A:) Nucleosi 13.4 33 0.0024 13.9 1.2 29 62-90 98-126 (149) 8 d1wkja1 d.58.6.1 (A:1-137) Nuc 12.9 36 0.0027 13.7 1.3 29 62-90 98-126 (137) 9 d2b8qa1 d.58.6.1 (A:2-129) Nuc 12.8 35 0.0025 13.8 1.2 28 63-90 95-122 (128) 10 d1nb2a_ d.58.6.1 (A:) Nucleosi 12.8 31 0.0022 14.1 0.9 29 62-90 98-126 (149) No 1 >d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum sativum) [TaxId: 3888]} Probab=19.66 E-value=14 Score=15.95 Aligned_cols=31 Identities=45% Similarity=0.640 Sum_probs=20.0 Q ss_pred HHHHHHHHHHHHHHHHHH---------------HHHHHHHHCCCCH Q ss_conf 863668898799999999---------------9898786207701 Q gi|254781081|r 45 LLNKHLLVDNLKSYLDKF---------------GSLISDFHRNSES 75 (93) Q Consensus 45 llnkhllvdnlksyldkf---------------gslisdfhrnses 75 (93) -.|.+..-+++|.|++.+ ||++.||||.--. T Consensus 221 ~~n~~~w~~~~~~yi~~~~~~~~~~~~y~~Ry~GsmVaD~hr~L~~ 266 (340) T d1d9qa_ 221 EGNYKLWDENLKKYIDDLKEPGPSGKPYSARYIGSLVGDFHRTLLY 266 (340) T ss_dssp GGGGGGSCHHHHHHHHHHTSCCSSSCCCEECBCSCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHH T ss_conf 6104443077999999972437767620035612211058899983 No 2 >d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Probab=17.72 E-value=21 Score=14.96 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=23.2 Q ss_pred HHHHHHHHHHCCCCHHEEEECCCCHHHHHH Q ss_conf 999898786207701323204542056652 Q gi|254781081|r 61 KFGSLISDFHRNSESELVRCSDSESEEAKE 90 (93) Q Consensus 61 kfgslisdfhrnseselvrcsdseseeake 90 (93) +.||+-.+|-.......|.||||..+-.+| T Consensus 97 ~~~siR~~fg~~~~~N~vHgSds~e~A~rE 126 (149) T d1xiqa_ 97 NTGTIRGDFCLEVSKNVIHGSDSVASANKE 126 (149) T ss_dssp CTTSHHHHHCCBTTBCSEEECSSHHHHHHH T ss_pred CCCCCCCCCEECCCCCCEECCCCHHHHHHH T ss_conf 999835333032366066888999999999 No 3 >d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]} Probab=16.97 E-value=25 Score=14.59 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=22.6 Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH Q ss_conf 99898786207701323204542056652 Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93) Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93) -|++-.+|-.......|.||||..+-.+| T Consensus 101 p~siR~~fg~~~~~N~vH~Sds~e~A~rE 129 (152) T d1zs6a1 101 PGTIRGDFCIEVGKNLIHGSDSVESARRE 129 (152) T ss_dssp TTSHHHHHCCSGGGCSEEECSSHHHHHHH T ss_pred CHHHHHHHCCCCCCCCEECCCCHHHHHHH T ss_conf 23454543432667744788999999999 No 4 >d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]} Probab=15.78 E-value=28 Score=14.33 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=23.3 Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH Q ss_conf 99898786207701323204542056652 Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93) Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93) -||+-.+|..+.....|.||||...-.+| T Consensus 99 p~siR~~yg~~~~~N~vHgSds~~~A~rE 127 (135) T d1k44a_ 99 PGTIRGDFALETQFNLVHGSDSAESAQRE 127 (135) T ss_dssp TTSHHHHHCCCSTTCCEEECSSHHHHHHH T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHHHHH T ss_conf 99837986587565086788999999999 No 5 >d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]} Probab=14.27 E-value=33 Score=13.93 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=21.8 Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH Q ss_conf 99898786207701323204542056652 Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93) Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93) -|++-.+|-.+.-...|.||||..+-.+| T Consensus 100 p~siR~~fg~~~~~N~vH~Sds~e~A~~E 128 (151) T d1w7wa_ 100 PGTIRGDLAVVVGRNIIHGSDGPETAKDE 128 (151) T ss_dssp TTSHHHHHCCSGGGCCEEECCSHHHHHHH T ss_pred CCCHHHHHCCCCCCCEEECCCCHHHHHHH T ss_conf 97245764656677602678998999999 No 6 >d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]} Probab=14.08 E-value=31 Score=14.09 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=22.0 Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH Q ss_conf 99898786207701323204542056652 Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93) Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93) -|++-.+|-.+.....|.||||..+-.+| T Consensus 102 p~tiR~~yg~~~~~N~vHgSds~esA~rE 130 (153) T d1s57a_ 102 PGTIRGDLAVQTGRNIVHGSDSPENGKRE 130 (153) T ss_dssp TTSHHHHHCCBTTBCCEEECSSHHHHHHH T ss_pred CCCCHHHHEEECCCCEEECCCCHHHHHHH T ss_conf 99820343142467126778998999999 No 7 >d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=13.36 E-value=33 Score=13.90 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=21.3 Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH Q ss_conf 99898786207701323204542056652 Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93) Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93) -|++-.+|-...-...|.||||..+-.+| T Consensus 98 p~tIR~~fg~~~~~N~vH~Sds~e~A~rE 126 (149) T d1u8wa_ 98 PGTIRGDFAIDIGRNVIHGSDSVESARKE 126 (149) T ss_dssp TTSHHHHHCCSTTSCSEEECSSHHHHHHH T ss_pred CCCHHCCCCCCCCCCCEECCCCHHHHHHH T ss_conf 97500010366453406778998999999 No 8 >d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]} Probab=12.86 E-value=36 Score=13.68 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=21.8 Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH Q ss_conf 99898786207701323204542056652 Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93) Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93) -||+-.+|-.......|.||||..+-.+| T Consensus 98 p~siR~~yg~~~~~N~vH~Sds~e~A~rE 126 (137) T d1wkja1 98 PGTIRGDFATTIDENVIHGSATLEDAQRE 126 (137) T ss_dssp TTSHHHHHCCCSTTCSEEECSSHHHHHHH T ss_pred CCCHHHHHCCCCCCCCEECCCCHHHHHHH T ss_conf 98758871466677884678999999999 No 9 >d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]} Probab=12.82 E-value=35 Score=13.80 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=20.3 Q ss_pred HHHHHHHHCCCCHHEEEECCCCHHHHHH Q ss_conf 9898786207701323204542056652 Q gi|254781081|r 63 GSLISDFHRNSESELVRCSDSESEEAKE 90 (93) Q Consensus 63 gslisdfhrnseselvrcsdseseeake 90 (93) |++-.+|-.......|.||||...-.+| T Consensus 95 ~siR~~fg~~~~~N~vH~Sds~~~A~~E 122 (128) T d2b8qa1 95 GTIRGDLANDIRENLIHASDSEDSAVDE 122 (128) T ss_dssp TSHHHHHCCCSSCCSEEECCSHHHHHHH T ss_pred CCHHHHHCCCCCCCCEECCCCHHHHHHH T ss_conf 7967886477665496888999999999 No 10 >d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]} Probab=12.78 E-value=31 Score=14.10 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=21.8 Q ss_pred HHHHHHHHHCCCCHHEEEECCCCHHHHHH Q ss_conf 99898786207701323204542056652 Q gi|254781081|r 62 FGSLISDFHRNSESELVRCSDSESEEAKE 90 (93) Q Consensus 62 fgslisdfhrnseselvrcsdseseeake 90 (93) -|++-.+|-.+.....|.||||..+-.+| T Consensus 98 p~siR~~yg~~~~~N~vH~Sds~e~A~rE 126 (149) T d1nb2a_ 98 PGTIRGDFGVSAGRNAIHGSDSAGSAAKE 126 (149) T ss_dssp TTSHHHHSCSCSSSCSEEECSSHHHHHHH T ss_pred CCHHHHHHEEEECCCEEECCCCHHHHHHH T ss_conf 51132123052000102679998999999 Done!