BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781081|ref|YP_003065494.1| hypothetical protein
CLIBASIA_04915 [Candidatus Liberibacter asiaticus str. psy62]
(93 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254781081|ref|YP_003065494.1| hypothetical protein CLIBASIA_04915 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040758|gb|ACT57554.1| hypothetical protein CLIBASIA_04915 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 93
Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats.
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MSEIMCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLD 60
MSEIMCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLD
Sbjct: 1 MSEIMCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLD 60
Query: 61 KFGSLISDFHRNSESELVRCSDSESEEAKEGTE 93
KFGSLISDFHRNSESELVRCSDSESEEAKEGTE
Sbjct: 61 KFGSLISDFHRNSESELVRCSDSESEEAKEGTE 93
>gi|45201038|ref|NP_986608.1| AGL058Cp [Ashbya gossypii ATCC 10895]
gi|44985808|gb|AAS54432.1| AGL058Cp [Ashbya gossypii ATCC 10895]
Length = 969
Score = 37.8 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 42/78 (53%)
Query: 9 YAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGSLISD 68
Y EE +S+ L L+ A D I+++E+S+L ++ ++ K+ ++D K ++ S ++
Sbjct: 615 YQEEIHSLELQLEEAHDKLLISAEEISELHEKIAHIESEKNAIIDEKKDIVESLMSAKAE 674
Query: 69 FHRNSESELVRCSDSESE 86
F + + L E+E
Sbjct: 675 FQQREQEHLTATEQLETE 692
>gi|194226990|ref|XP_001489883.2| PREDICTED: similar to hCG2042154 [Equus caballus]
Length = 672
Score = 37.0 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 5 MCEAYAEERYSVLLDLDFASDSDQ-ITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFG 63
+C+AY +R D+D + D+ Q +T DE DLTQ+Y Y L+ + N +S+ +
Sbjct: 260 VCQAYLGQREHE--DIDISEDAVQDLTEDEWKDLTQQY-YALVQGDAFISNSRSHFSQCQ 316
Query: 64 SLIS 67
+L++
Sbjct: 317 ALLN 320
>gi|296224434|ref|XP_002758058.1| PREDICTED: cytosolic 5'-nucleotidase 1B isoform 3 [Callithrix
jacchus]
Length = 592
Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 8 AYAEERYSVLLDLD---FASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGS 64
AY + + V D D F+ +S+ T + D +YD L +K L LK +L+ G
Sbjct: 438 AYCDTQLRVAFDGDAVLFSDESEHFTKEHGMDKFFQYDTLCESKPLAQGPLKGFLEDLGR 497
Query: 65 LISDFHRNSESEL 77
L FH +E L
Sbjct: 498 LQKKFHAKNERLL 510
>gi|296224432|ref|XP_002758057.1| PREDICTED: cytosolic 5'-nucleotidase 1B isoform 2 [Callithrix
jacchus]
Length = 609
Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 8 AYAEERYSVLLDLD---FASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGS 64
AY + + V D D F+ +S+ T + D +YD L +K L LK +L+ G
Sbjct: 455 AYCDTQLRVAFDGDAVLFSDESEHFTKEHGMDKFFQYDTLCESKPLAQGPLKGFLEDLGR 514
Query: 65 LISDFHRNSESEL 77
L FH +E L
Sbjct: 515 LQKKFHAKNERLL 527
>gi|296224430|ref|XP_002758056.1| PREDICTED: cytosolic 5'-nucleotidase 1B isoform 1 [Callithrix
jacchus]
Length = 626
Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 8 AYAEERYSVLLDLD---FASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGS 64
AY + + V D D F+ +S+ T + D +YD L +K L LK +L+ G
Sbjct: 472 AYCDTQLRVAFDGDAVLFSDESEHFTKEHGMDKFFQYDTLCESKPLAQGPLKGFLEDLGR 531
Query: 65 LISDFHRNSESEL 77
L FH +E L
Sbjct: 532 LQKKFHAKNERLL 544
>gi|149017521|gb|EDL76525.1| rCG59308, isoform CRA_b [Rattus norvegicus]
Length = 475
Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 5 MCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGS 64
+C+AY + +DL AS ++ ++ +E +DLTQ+Y YLL++ + + + +SY + +
Sbjct: 75 VCQAYLGQLEHEDIDLSDAS-AEALSEEEWNDLTQQY-YLLVHGNASITDSRSYFAQCQA 132
Query: 65 LISDFHR-NSESEL 77
L+S N ++E+
Sbjct: 133 LLSKISSVNPQTEI 146
>gi|149017522|gb|EDL76526.1| rCG59308, isoform CRA_c [Rattus norvegicus]
Length = 588
Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 5 MCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGS 64
+C+AY + +DL AS ++ ++ +E +DLTQ+Y YLL++ + + + +SY + +
Sbjct: 75 VCQAYLGQLEHEDIDLSDAS-AEALSEEEWNDLTQQY-YLLVHGNASITDSRSYFAQCQA 132
Query: 65 LISDFHR-NSESEL 77
L+S N ++E+
Sbjct: 133 LLSKISSVNPQTEI 146
>gi|66911735|gb|AAH97453.1| RGD1306462 protein [Rattus norvegicus]
Length = 375
Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 5 MCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGS 64
+C+AY + +DL AS ++ ++ +E +DLTQ+Y YLL++ + + + +SY + +
Sbjct: 263 VCQAYLGQLEHEDIDLSDAS-AEALSEEEWNDLTQQY-YLLVHGNASITDSRSYFAQCQA 320
Query: 65 LISDFHR-NSESEL 77
L+S N ++E+
Sbjct: 321 LLSKISSVNPQTEI 334
>gi|295293121|ref|NP_766406.2| protein monoglycylase TTLL8 [Mus musculus]
gi|172044389|sp|A4Q9F1|TTLL8_MOUSE RecName: Full=Protein monoglycylase TTLL8; AltName:
Full=Tubulin--tyrosine ligase-like protein 8
gi|145369184|emb|CAM84329.1| glycylase [Mus musculus]
gi|148672443|gb|EDL04390.1| RIKEN cDNA 1700019P01, isoform CRA_b [Mus musculus]
Length = 832
Score = 34.7 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 5 MCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGS 64
+C+AY + +D+ AS ++ ++ +E +DLTQ+Y YLL++ + + + KSY + +
Sbjct: 316 VCQAYLGQLEHEDIDVSEAS-TEALSEEEWNDLTQQY-YLLVHGNASITDSKSYFAQCQA 373
Query: 65 LISDFHR-NSESEL 77
L+S N ++E+
Sbjct: 374 LLSKISSVNPQTEI 387
>gi|109732579|gb|AAI16295.1| Ttll8 protein [Mus musculus]
Length = 634
Score = 34.7 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 5 MCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGS 64
+C+AY + +D+ AS ++ ++ +E +DLTQ+Y YLL++ + + + KSY + +
Sbjct: 118 VCQAYLGQLEHEDIDVSEAS-TEALSEEEWNDLTQQY-YLLVHGNASITDSKSYFAQCQA 175
Query: 65 LISDFHR-NSESEL 77
L+S N ++E+
Sbjct: 176 LLSKISSVNPQTEI 189
>gi|26325682|dbj|BAC26595.1| unnamed protein product [Mus musculus]
gi|148672442|gb|EDL04389.1| RIKEN cDNA 1700019P01, isoform CRA_a [Mus musculus]
Length = 518
Score = 34.7 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 5 MCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGS 64
+C+AY + +D+ AS ++ ++ +E +DLTQ+Y YLL++ + + + KSY + +
Sbjct: 118 VCQAYLGQLEHEDIDVSEAS-TEALSEEEWNDLTQQY-YLLVHGNASITDSKSYFAQCQA 175
Query: 65 LISDFHR-NSESEL 77
L+S N ++E+
Sbjct: 176 LLSKISSVNPQTEI 189
>gi|26326135|dbj|BAC26811.1| unnamed protein product [Mus musculus]
gi|109730773|gb|AAI16294.1| Tubulin tyrosine ligase-like family, member 8 [Mus musculus]
Length = 781
Score = 34.7 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 5 MCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGS 64
+C+AY + +D+ AS ++ ++ +E +DLTQ+Y YLL++ + + + KSY + +
Sbjct: 265 VCQAYLGQLEHEDIDVSEAS-TEALSEEEWNDLTQQY-YLLVHGNASITDSKSYFAQCQA 322
Query: 65 LISDFHR-NSESEL 77
L+S N ++E+
Sbjct: 323 LLSKISSVNPQTEI 336
>gi|221057748|ref|XP_002261382.1| SICA antigen (fragment) [Plasmodium knowlesi strain H]
gi|194247387|emb|CAQ40787.1| SICA antigen (fragment) [Plasmodium knowlesi strain H]
Length = 1074
Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 27 DQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGSLISDFHRNSESELVRCSDSESE 86
D ITSD ++D + + + + ++D + + +L + + +S C+D +SE
Sbjct: 627 DNITSDNITDYIDNHHHHITHPSYIIDPWEEVQTQLKNLSGEIQKKKDSVGSHCTDLQSE 686
Query: 87 EAKE 90
E KE
Sbjct: 687 EEKE 690
>gi|168065993|ref|XP_001784929.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663516|gb|EDQ50276.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 515
Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 16 VLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGSLISDFHRNSES 75
+L DL A+ T+ SDL + YD+L+ + L++ + + +D+ SD R +
Sbjct: 66 LLNDLGLANHLRPQTAGFPSDLDETYDWLVALQDDLMEGIDAAVDQLAKQKSDGKRGRPN 125
Query: 76 ELVRCSDSESEEAKEGTE 93
E R +E +A +G++
Sbjct: 126 EKFRTPTNEGAKASKGSD 143
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.311 0.129 0.346
Lambda K H
0.267 0.0398 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 742,976,279
Number of Sequences: 14124377
Number of extensions: 24537524
Number of successful extensions: 62836
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 62822
Number of HSP's gapped (non-prelim): 25
length of query: 93
length of database: 4,842,793,630
effective HSP length: 63
effective length of query: 30
effective length of database: 3,952,957,879
effective search space: 118588736370
effective search space used: 118588736370
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 75 (33.5 bits)