RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781081|ref|YP_003065494.1| hypothetical protein
CLIBASIA_04915 [Candidatus Liberibacter asiaticus str. psy62]
         (93 letters)



>gnl|CDD|147389 pfam05180, zf-DNL, DNL zinc finger.  The domain is named after a
          short C-terminal motif of D(N/H)L. This domain is a
          novel zinc-finger protein essential for protein import
          into mitochondria.
          Length = 66

 Score = 26.8 bits (60), Expect = 1.4
 Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 8/31 (25%)

Query: 47 NKHLLVDNLKSYLDKFGSLISDFHRNSESEL 77
          N+HL+ DNL            D   N E  L
Sbjct: 37 NRHLIADNLG--------WFGDGKVNIEDIL 59


>gnl|CDD|36289 KOG1071, KOG1071, KOG1071, Mitochondrial translation elongation
           factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt
           [Translation, ribosomal structure and biogenesis].
          Length = 340

 Score = 25.0 bits (54), Expect = 4.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 54  NLKSYLDKFGSLISDFHRNSESELVRCSDSE 84
            +K YLD     + DF R    E  R +++E
Sbjct: 310 TVKEYLDPHNVSVVDFVRFEVGEGERAAETE 340


>gnl|CDD|29029 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and
          Tyr protein phosphatases. Structurally similar to
          tyrosine-specific phosphatases but with a shallower
          active site cleft and a distinctive active site
          signature motif, HCxxGxxR. Characterized as VHR- or
          Cdc25-like..
          Length = 139

 Score = 24.0 bits (52), Expect = 9.1
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 53 DNLKSYLDKFGSLISDFHRNSESELVRC 80
           ++  Y D+    I D        LV C
Sbjct: 61 QDISKYFDEAVDFIDDAREKGGKVLVHC 88


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.311    0.129    0.346 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,007,831
Number of extensions: 43326
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 16
Length of query: 93
Length of database: 6,263,737
Length adjustment: 61
Effective length of query: 32
Effective length of database: 4,945,588
Effective search space: 158258816
Effective search space used: 158258816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.6 bits)