RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781081|ref|YP_003065494.1| hypothetical protein
CLIBASIA_04915 [Candidatus Liberibacter asiaticus str. psy62]
(93 letters)
>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate
dehydratase/shikimate dehydrogenase.
Length = 529
Score = 26.3 bits (58), Expect = 1.7
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 49 HLLVDNLKSYLDKFGSLISDFHRNS-----ESELVRCSDSESEEAKE 90
HLLVD+L +L + S DF S + + ++C D AK
Sbjct: 286 HLLVDDLAKFLQTYSS--PDFAGFSCTIPHKEDALKCCDEVDPIAKS 330
>gnl|CDD|178157 PLN02542, PLN02542, fructose-1,6-bisphosphatase.
Length = 412
Score = 26.0 bits (57), Expect = 2.4
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 15/40 (37%)
Query: 47 NKHLLVDNLKSYLDKF---------------GSLISDFHR 71
N L D LK Y+D GSL+ DFHR
Sbjct: 295 NYQLWDDKLKKYIDDLKDPGPSGKPYSARYIGSLVGDFHR 334
>gnl|CDD|182459 PRK10436, PRK10436, hypothetical protein; Provisional.
Length = 462
Score = 26.0 bits (58), Expect = 2.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 26 SDQITSDELSDLTQRYDYLLLNK 48
S+++ D+L L QRY +LL+
Sbjct: 1 SNEMNIDQLHALCQRYQAVLLDS 23
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 25.7 bits (56), Expect = 2.5
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 13 RYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGSLISDFHRN 72
++ VL+D S DQ+ +++++ L+Q + KHLL+ N S D +IS + +
Sbjct: 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQV---KHLLLLNATSSGDTLDEVISAYQGH 326
Query: 73 S 73
Sbjct: 327 G 327
>gnl|CDD|179149 PRK00872, PRK00872, hypothetical protein; Provisional.
Length = 157
Score = 25.4 bits (56), Expect = 3.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 20 LDFASDSDQITSDELSDLTQRY 41
L +D I D L+DL RY
Sbjct: 55 LPGGADWQIIRPDGLTDLEARY 76
>gnl|CDD|165098 PHA02730, PHA02730, ankyrin-like protein; Provisional.
Length = 672
Score = 25.0 bits (54), Expect = 4.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 20 LDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGSLISDFHRN 72
L++ + + + ++ Q+ Y NK LVD L SY ++I F+R+
Sbjct: 482 LEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLETMIDAFNRD 534
>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase.
Length = 476
Score = 25.0 bits (54), Expect = 4.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 12 ERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLL 46
+R V+ D F+ D D +ELS L ++Y +LL+
Sbjct: 249 KRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLV 283
>gnl|CDD|172324 PRK13787, PRK13787, adenylosuccinate synthetase; Provisional.
Length = 423
Score = 24.9 bits (54), Expect = 4.6
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 13 RYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGSLI--SDFH 70
R LLD + + ++ +L + Y ++ + + D LK +L K G I + ++
Sbjct: 148 RVGDLLDKSYKRRLKHLVDEKNRELDKLYGMPPVSYNDINDGLKFFLSKVGKNIINTAYY 207
Query: 71 RNSESE 76
++E +
Sbjct: 208 LDTELK 213
>gnl|CDD|171532 PRK12482, PRK12482, flagellar motor protein MotA; Provisional.
Length = 287
Score = 24.7 bits (54), Expect = 6.1
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 27 DQ-ITSDELSDLTQRYDYLLLNKHLL---VDNLK 56
DQ I E S L Q+Y +L K L+ DN +
Sbjct: 98 DQHIEIPEESSLFQKYPLILQQKRLITFISDNFR 131
>gnl|CDD|131967 TIGR02921, PEP_integral, PEP-CTERM family integral membrane
protein. Members of this protein family, found in three
different species so far, have a PEP-CTERM sequence at
the carboxyl-terminus (see model TIGR02595), but are
unusual among PEP-CTERM proteins in having multiple
predicted transmembrane segments. The function is
unknown. It is proposed that a member of the EpsH
family, to be designated exosortase (see TIGR02602),
recognizes and cleaves PEP-CTERM proteins in a manner
analogous to the cleavage of LPXTG proteins by sortase
(see Haft, et al., 2006).
Length = 952
Score = 24.2 bits (52), Expect = 6.7
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 19 DLDFASDSDQITSDELSDLTQRYDYLLLNKHLLVDNLKSYLDKFGSLISDFHRNSE--SE 76
D D A + + +D + R L K + +D+LKS LD ++ H S+ S
Sbjct: 823 DADAALSNAKQEADFFPAIAARQLIEGLAKQIDLDDLKS-LDAIHAIAKAEHIVSDYSSM 881
Query: 77 LVRCSDSESEEAKE 90
+V D + + +E
Sbjct: 882 IVLVEDEQKKALEE 895
>gnl|CDD|181764 PRK09293, PRK09293, fructose-1,6-bisphosphatase; Provisional.
Length = 327
Score = 24.4 bits (54), Expect = 6.8
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 63 GSLISDFHRN 72
GS+++D HR
Sbjct: 238 GSMVADVHRI 247
>gnl|CDD|147925 pfam06028, DUF915, Alpha/beta hydrolase of unknown function
(DUF915). This family consists of several bacterial
proteins of unknown function. Members of this family
have an alpha/beta hydrolase fold.
Length = 249
Score = 24.2 bits (53), Expect = 7.5
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 27 DQITSDELSDLTQRYDYLLLNKHLLVDN 54
+ D + T YDYL+ N + +
Sbjct: 151 AIVLKDGPKNKTPMYDYLIDNYKKKIPS 178
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.311 0.129 0.346
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,397,074
Number of extensions: 73619
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 22
Length of query: 93
Length of database: 5,994,473
Length adjustment: 61
Effective length of query: 32
Effective length of database: 4,676,385
Effective search space: 149644320
Effective search space used: 149644320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.5 bits)