RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781081|ref|YP_003065494.1| hypothetical protein
CLIBASIA_04915 [Candidatus Liberibacter asiaticus str. psy62]
         (93 letters)



>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 135

 Score = 24.6 bits (53), Expect = 2.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 63  GSLISDFHRNSESELVRCSDSESEEAKE 90
           G++  DF   ++  LV  SDS     +E
Sbjct: 100 GTIRGDFALETQFNLVHGSDSAESAQRE 127


>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM,
          C-terminal domain {Neisseria meningitidis [TaxId: 487]}
          Length = 140

 Score = 23.3 bits (49), Expect = 5.4
 Identities = 9/44 (20%), Positives = 15/44 (34%)

Query: 9  YAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLLLNKHLLV 52
          Y +E  S+     F  D D + ++   +L      L       V
Sbjct: 3  YVDETISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSV 46


>d2d1pb1 c.114.1.1 (B:1-119) tRNA 2-thiouridine synthesizing protein
           C, TusC {Escherichia coli [TaxId: 562]}
          Length = 119

 Score = 23.3 bits (50), Expect = 5.7
 Identities = 7/43 (16%), Positives = 15/43 (34%)

Query: 3   EIMCEAYAEERYSVLLDLDFASDSDQITSDELSDLTQRYDYLL 45
           +    A +     +     F  ++  + +D L      YD +L
Sbjct: 75  QCWVCAASLRERGLDPQTPFVVEATPLEADALRRELANYDVIL 117


>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
           {Mimivirus [TaxId: 315393]}
          Length = 128

 Score = 23.1 bits (49), Expect = 7.1
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 47  NKHLLVDNLKSYLDKFGSLISDFHRNSESELVRCSDSESEEAKE 90
           +    +  L+  +   G++  D   +    L+  SDSE     E
Sbjct: 79  DAISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDSAVDE 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.129    0.346 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 310,281
Number of extensions: 11587
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 9
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.2 bits)