Query         gi|254781082|ref|YP_003065495.1| hypothetical protein CLIBASIA_04920 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 108
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed Jun  1 00:17:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781082.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3fem_A Pyridoxine biosynthesis  60.5       6 0.00025   19.8   3.1   59   20-82    154-212 (297)
  2 2zbt_A Pyridoxal biosynthesis   36.2      20 0.00086   16.7   2.7   58   20-82    158-215 (297)
  3 2nv1_A Pyridoxal biosynthesis   30.4      31  0.0013   15.7   2.8   58   20-82    158-215 (305)
  4 1vlu_A Gamma-glutamyl phosphat  27.7      23 0.00095   16.5   1.7   35   18-52     12-46  (468)
  5 2nqb_D Histone H2B; nucleosome  27.2      22 0.00092   16.6   1.6   13   59-71     61-73  (123)
  6 2h5g_A Delta 1-pyrroline-5-car  27.2      18 0.00077   17.0   1.2   36   16-51     25-60  (463)
  7 1j2m_A CPI-17, 17-kDa PKC-pote  23.8      34  0.0014   15.4   2.1   38   36-73     60-98  (99)
  8 1tzy_B Histone H2B; histone-fo  22.7      30  0.0013   15.8   1.6   12   60-71     65-76  (126)
  9 3p04_A Uncharacterized BCR; SE  16.4      60  0.0025   14.0   2.5   35   18-52     17-51  (87)
 10 3ci9_A Heat shock factor-bindi  16.3      41  0.0017   15.0   1.1   26   30-55     22-47  (48)

No 1  
>3fem_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, synthase, biosynthetic protein, transferase; 3.02A {Saccharomyces cerevisiae}
Probab=60.47  E-value=6  Score=19.84  Aligned_cols=59  Identities=15%  Similarity=0.211  Sum_probs=39.0

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEH
Q ss_conf             679999983485611323330567776888787348751237999999999974086500119
Q gi|254781082|r   20 NSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFSL   82 (108)
Q Consensus        20 nsivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfsl   82 (108)
                      ..|+||.|..+.-+++...|..-..+.-|-...|+-...|.    |-...+-+..|||-||+-
T Consensus       154 GnVveAVrH~R~i~~eI~~l~~~~~~~el~~~Ak~~~ap~~----Lv~~v~~~grLPVvnFAA  212 (297)
T 3fem_A          154 GDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVS----LLKDVLEKGKLPVVNFAA  212 (297)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCCHH----HHHHHHHHTSCSSEEEBC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH----HHHHHHHHCCCCEEEECC
T ss_conf             56999999999999999999708925689999998688799----999999968988467546


No 2  
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus HB8} PDB: 2iss_A*
Probab=36.20  E-value=20  Score=16.74  Aligned_cols=58  Identities=24%  Similarity=0.349  Sum_probs=34.5

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEH
Q ss_conf             679999983485611323330567776888787348751237999999999974086500119
Q gi|254781082|r   20 NSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFSL   82 (108)
Q Consensus        20 nsivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfsl   82 (108)
                      ..++||.|..+.-+.+...+..-..+ -|...-|+-...|    +|-...+-+..|||-||+-
T Consensus       158 GnVveAVrH~R~i~~eI~~l~~~~~~-el~~~Ak~~~ap~----eLv~~v~~~GrLPVvnFaA  215 (297)
T 2zbt_A          158 GNVVEAVRHARTMWKEIRYVQSLRED-ELMAYAKEIGAPF----ELVKWVHDHGRLPVVNFAA  215 (297)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHSCGG-GHHHHHHHHTCCH----HHHHHHHHHSSCSSCEEBC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHCCCH----HHHHHHHHHCCCCEEEECC
T ss_conf             63999999999999999999779999-9999999837677----9999999968898554446


No 3  
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=30.42  E-value=31  Score=15.72  Aligned_cols=58  Identities=28%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEH
Q ss_conf             679999983485611323330567776888787348751237999999999974086500119
Q gi|254781082|r   20 NSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFSL   82 (108)
Q Consensus        20 nsivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfsl   82 (108)
                      ..++||.|..+.-+.+...|..-.. .-|....|+-...|.    |-...+-+..|||-||+-
T Consensus       158 GnvveAVrH~R~i~~eI~~l~~~~~-~el~~~Ak~~~ap~e----Lv~~v~~~GrLPVvnFAA  215 (305)
T 2nv1_A          158 GNIVEAVRHMRKVNAQVRKVVAMSE-DELMTEAKNLGAPYE----LLLQIKKDGKLPVVNFAA  215 (305)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHSCG-GGHHHHHHHHTCCHH----HHHHHHHHTSCSSCEEBC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHCCCCHH----HHHHHHHHCCCCEEEECC
T ss_conf             5199999999999999999976998-899999875199789----999999978987367504


No 4  
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural genomics, JCSG, protein structure initiative, PSI; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=27.69  E-value=23  Score=16.48  Aligned_cols=35  Identities=23%  Similarity=0.224  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             15679999983485611323330567776888787
Q gi|254781082|r   18 ERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLE   52 (108)
Q Consensus        18 ernsivealrkakpsmsdlamlsveerdailddle   52 (108)
                      +-+++-+..++||-....|+-+|.++|+.+|..+.
T Consensus        12 ~m~~~~~~~~~Ak~A~~~l~~ls~~~R~~iL~~ia   46 (468)
T 1vlu_A           12 HMSSSQQIAKNARKAGNILKTISNEGRSDILYKIH   46 (468)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             03599999999999999998599999999999999


No 5  
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=27.19  E-value=22  Score=16.57  Aligned_cols=13  Identities=54%  Similarity=0.887  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             2379999999999
Q gi|254781082|r   59 YSFVNDLWERLKY   71 (108)
Q Consensus        59 ysfvndlwerlky   71 (108)
                      -|||||+.||+--
T Consensus        61 nSfv~diferIa~   73 (123)
T 2nqb_D           61 NSFVNDIFERIAA   73 (123)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999


No 6  
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=27.17  E-value=18  Score=17.01  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             541567999998348561132333056777688878
Q gi|254781082|r   16 RLERNSIVEALRKAKPSMSDLAMLSVEERDAILDDL   51 (108)
Q Consensus        16 rlernsivealrkakpsmsdlamlsveerdailddl   51 (108)
                      +---++|-+..++||-.-..|+-+|.++|++||..+
T Consensus        25 ~~~~~~v~~~~~~Ak~A~~~la~ls~~~R~~iL~~i   60 (463)
T 2h5g_A           25 KPAGPTVEQQGEMARSGGRMLATLEPEQRAEIIHHL   60 (463)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             677653999999999999999859999999999999


No 7  
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=23.84  E-value=34  Score=15.44  Aligned_cols=38  Identities=32%  Similarity=0.367  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             23330567776-888787348751237999999999974
Q gi|254781082|r   36 LAMLSVEERDA-ILDDLEKNGSSDYSFVNDLWERLKYLR   73 (108)
Q Consensus        36 lamlsveerda-ilddlekngssdysfvndlwerlkylr   73 (108)
                      |.|-|.|+|-. +-.-|..-++..-.|+++|-.+++-|+
T Consensus        60 Ldl~s~e~R~~~lq~lL~~c~~pte~FI~eLL~kl~gL~   98 (99)
T 1j2m_A           60 LELESEEERSRKIQGLLKSCTNPTENFVQELLVKLRGLH   98 (99)
T ss_dssp             HCCTTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHTTTTC
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf             705654899999999997669986999999999998611


No 8  
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3afa_D 3a6n_D 2cv5_D* 1f66_D 1p3i_D 1p3a_D 1p3b_D 1p3f_D 1p3g_D 1p34_D 1p3k_D 1p3l_D 1p3m_D 1p3o_D 1p3p_D ...
Probab=22.66  E-value=30  Score=15.78  Aligned_cols=12  Identities=58%  Similarity=0.949  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             379999999999
Q gi|254781082|r   60 SFVNDLWERLKY   71 (108)
Q Consensus        60 sfvndlwerlky   71 (108)
                      |||||+.||+--
T Consensus        65 sfv~diferIa~   76 (126)
T 1tzy_B           65 SFVNDIFERIAG   76 (126)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 9  
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-2, NESG, structural genomics, PROT structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=16.38  E-value=60  Score=14.01  Aligned_cols=35  Identities=29%  Similarity=0.349  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             15679999983485611323330567776888787
Q gi|254781082|r   18 ERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLE   52 (108)
Q Consensus        18 ernsivealrkakpsmsdlamlsveerdailddle   52 (108)
                      +-..|+++||..+|-.-+|..++-++..-|+|=+-
T Consensus        17 da~~i~~~lr~~~~VivNl~~ld~~~aqRiiDF~s   51 (87)
T 3p04_A           17 DAQVIGGAFRDGDAVVFDMSLLSREEARRIVDFAA   51 (87)
T ss_dssp             GHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf             99999999976997999977899899777999872


No 10 
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=16.33  E-value=41  Score=14.98  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=20.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             85611323330567776888787348
Q gi|254781082|r   30 KPSMSDLAMLSVEERDAILDDLEKNG   55 (108)
Q Consensus        30 kpsmsdlamlsveerdailddlekng   55 (108)
                      --.|||--+--..+-..-+||||||-
T Consensus        22 Fq~mSd~Ii~riDdM~~rIDdLEksi   47 (48)
T 3ci9_A           22 FQTISDQIIGRIDDMSSRIDDLEKNI   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99889999999999883688897643


Done!