Query gi|254781082|ref|YP_003065495.1| hypothetical protein CLIBASIA_04920 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 108 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed Jun 1 00:17:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781082.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3fem_A Pyridoxine biosynthesis 60.5 6 0.00025 19.8 3.1 59 20-82 154-212 (297) 2 2zbt_A Pyridoxal biosynthesis 36.2 20 0.00086 16.7 2.7 58 20-82 158-215 (297) 3 2nv1_A Pyridoxal biosynthesis 30.4 31 0.0013 15.7 2.8 58 20-82 158-215 (305) 4 1vlu_A Gamma-glutamyl phosphat 27.7 23 0.00095 16.5 1.7 35 18-52 12-46 (468) 5 2nqb_D Histone H2B; nucleosome 27.2 22 0.00092 16.6 1.6 13 59-71 61-73 (123) 6 2h5g_A Delta 1-pyrroline-5-car 27.2 18 0.00077 17.0 1.2 36 16-51 25-60 (463) 7 1j2m_A CPI-17, 17-kDa PKC-pote 23.8 34 0.0014 15.4 2.1 38 36-73 60-98 (99) 8 1tzy_B Histone H2B; histone-fo 22.7 30 0.0013 15.8 1.6 12 60-71 65-76 (126) 9 3p04_A Uncharacterized BCR; SE 16.4 60 0.0025 14.0 2.5 35 18-52 17-51 (87) 10 3ci9_A Heat shock factor-bindi 16.3 41 0.0017 15.0 1.1 26 30-55 22-47 (48) No 1 >3fem_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, synthase, biosynthetic protein, transferase; 3.02A {Saccharomyces cerevisiae} Probab=60.47 E-value=6 Score=19.84 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=39.0 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEH Q ss_conf 679999983485611323330567776888787348751237999999999974086500119 Q gi|254781082|r 20 NSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFSL 82 (108) Q Consensus 20 nsivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfsl 82 (108) ..|+||.|..+.-+++...|..-..+.-|-...|+-...|. |-...+-+..|||-||+- T Consensus 154 GnVveAVrH~R~i~~eI~~l~~~~~~~el~~~Ak~~~ap~~----Lv~~v~~~grLPVvnFAA 212 (297) T 3fem_A 154 GDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVS----LLKDVLEKGKLPVVNFAA 212 (297) T ss_dssp TCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCCHH----HHHHHHHHTSCSSEEEBC T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH----HHHHHHHHCCCCEEEECC T ss_conf 56999999999999999999708925689999998688799----999999968988467546 No 2 >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus HB8} PDB: 2iss_A* Probab=36.20 E-value=20 Score=16.74 Aligned_cols=58 Identities=24% Similarity=0.349 Sum_probs=34.5 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEH Q ss_conf 679999983485611323330567776888787348751237999999999974086500119 Q gi|254781082|r 20 NSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFSL 82 (108) Q Consensus 20 nsivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfsl 82 (108) ..++||.|..+.-+.+...+..-..+ -|...-|+-...| +|-...+-+..|||-||+- T Consensus 158 GnVveAVrH~R~i~~eI~~l~~~~~~-el~~~Ak~~~ap~----eLv~~v~~~GrLPVvnFaA 215 (297) T 2zbt_A 158 GNVVEAVRHARTMWKEIRYVQSLRED-ELMAYAKEIGAPF----ELVKWVHDHGRLPVVNFAA 215 (297) T ss_dssp CCTHHHHHHHHHHHHHHHHHHHSCGG-GHHHHHHHHTCCH----HHHHHHHHHSSCSSCEEBC T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHCCCH----HHHHHHHHHCCCCEEEECC T ss_conf 63999999999999999999779999-9999999837677----9999999968898554446 No 3 >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A Probab=30.42 E-value=31 Score=15.72 Aligned_cols=58 Identities=28% Similarity=0.311 Sum_probs=33.6 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEH Q ss_conf 679999983485611323330567776888787348751237999999999974086500119 Q gi|254781082|r 20 NSIVEALRKAKPSMSDLAMLSVEERDAILDDLEKNGSSDYSFVNDLWERLKYLRDLPVYNFSL 82 (108) Q Consensus 20 nsivealrkakpsmsdlamlsveerdailddlekngssdysfvndlwerlkylrdlpvynfsl 82 (108) ..++||.|..+.-+.+...|..-.. .-|....|+-...|. |-...+-+..|||-||+- T Consensus 158 GnvveAVrH~R~i~~eI~~l~~~~~-~el~~~Ak~~~ap~e----Lv~~v~~~GrLPVvnFAA 215 (305) T 2nv1_A 158 GNIVEAVRHMRKVNAQVRKVVAMSE-DELMTEAKNLGAPYE----LLLQIKKDGKLPVVNFAA 215 (305) T ss_dssp CCTHHHHHHHHHHHHHHHHHHHSCG-GGHHHHHHHHTCCHH----HHHHHHHHTSCSSCEEBC T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHCCCCHH----HHHHHHHHCCCCEEEECC T ss_conf 5199999999999999999976998-899999875199789----999999978987367504 No 4 >1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural genomics, JCSG, protein structure initiative, PSI; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1 Probab=27.69 E-value=23 Score=16.48 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 15679999983485611323330567776888787 Q gi|254781082|r 18 ERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLE 52 (108) Q Consensus 18 ernsivealrkakpsmsdlamlsveerdailddle 52 (108) +-+++-+..++||-....|+-+|.++|+.+|..+. T Consensus 12 ~m~~~~~~~~~Ak~A~~~l~~ls~~~R~~iL~~ia 46 (468) T 1vlu_A 12 HMSSSQQIAKNARKAGNILKTISNEGRSDILYKIH 46 (468) T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 03599999999999999998599999999999999 No 5 >2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* Probab=27.19 E-value=22 Score=16.57 Aligned_cols=13 Identities=54% Similarity=0.887 Sum_probs=10.1 Q ss_pred HHHHHHHHHHHHH Q ss_conf 2379999999999 Q gi|254781082|r 59 YSFVNDLWERLKY 71 (108) Q Consensus 59 ysfvndlwerlky 71 (108) -|||||+.||+-- T Consensus 61 nSfv~diferIa~ 73 (123) T 2nqb_D 61 NSFVNDIFERIAA 73 (123) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 6 >2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.25A {Homo sapiens} Probab=27.17 E-value=18 Score=17.01 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 541567999998348561132333056777688878 Q gi|254781082|r 16 RLERNSIVEALRKAKPSMSDLAMLSVEERDAILDDL 51 (108) Q Consensus 16 rlernsivealrkakpsmsdlamlsveerdailddl 51 (108) +---++|-+..++||-.-..|+-+|.++|++||..+ T Consensus 25 ~~~~~~v~~~~~~Ak~A~~~la~ls~~~R~~iL~~i 60 (463) T 2h5g_A 25 KPAGPTVEQQGEMARSGGRMLATLEPEQRAEIIHHL 60 (463) T ss_dssp ----CCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 677653999999999999999859999999999999 No 7 >1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A Probab=23.84 E-value=34 Score=15.44 Aligned_cols=38 Identities=32% Similarity=0.367 Sum_probs=26.8 Q ss_pred HHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 23330567776-888787348751237999999999974 Q gi|254781082|r 36 LAMLSVEERDA-ILDDLEKNGSSDYSFVNDLWERLKYLR 73 (108) Q Consensus 36 lamlsveerda-ilddlekngssdysfvndlwerlkylr 73 (108) |.|-|.|+|-. +-.-|..-++..-.|+++|-.+++-|+ T Consensus 60 Ldl~s~e~R~~~lq~lL~~c~~pte~FI~eLL~kl~gL~ 98 (99) T 1j2m_A 60 LELESEEERSRKIQGLLKSCTNPTENFVQELLVKLRGLH 98 (99) T ss_dssp HCCTTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHTTTTC T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC T ss_conf 705654899999999997669986999999999998611 No 8 >1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3afa_D 3a6n_D 2cv5_D* 1f66_D 1p3i_D 1p3a_D 1p3b_D 1p3f_D 1p3g_D 1p34_D 1p3k_D 1p3l_D 1p3m_D 1p3o_D 1p3p_D ... Probab=22.66 E-value=30 Score=15.78 Aligned_cols=12 Identities=58% Similarity=0.949 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHH Q ss_conf 379999999999 Q gi|254781082|r 60 SFVNDLWERLKY 71 (108) Q Consensus 60 sfvndlwerlky 71 (108) |||||+.||+-- T Consensus 65 sfv~diferIa~ 76 (126) T 1tzy_B 65 SFVNDIFERIAG 76 (126) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 9 >3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-2, NESG, structural genomics, PROT structure initiative; 2.20A {Corynebacterium glutamicum} Probab=16.38 E-value=60 Score=14.01 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 15679999983485611323330567776888787 Q gi|254781082|r 18 ERNSIVEALRKAKPSMSDLAMLSVEERDAILDDLE 52 (108) Q Consensus 18 ernsivealrkakpsmsdlamlsveerdailddle 52 (108) +-..|+++||..+|-.-+|..++-++..-|+|=+- T Consensus 17 da~~i~~~lr~~~~VivNl~~ld~~~aqRiiDF~s 51 (87) T 3p04_A 17 DAQVIGGAFRDGDAVVFDMSLLSREEARRIVDFAA 51 (87) T ss_dssp GHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC T ss_conf 99999999976997999977899899777999872 No 10 >3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens} Probab=16.33 E-value=41 Score=14.98 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=20.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 85611323330567776888787348 Q gi|254781082|r 30 KPSMSDLAMLSVEERDAILDDLEKNG 55 (108) Q Consensus 30 kpsmsdlamlsveerdailddlekng 55 (108) --.|||--+--..+-..-+||||||- T Consensus 22 Fq~mSd~Ii~riDdM~~rIDdLEksi 47 (48) T 3ci9_A 22 FQTISDQIIGRIDDMSSRIDDLEKNI 47 (48) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC--- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99889999999999883688897643 Done!