Query gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 160
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:16:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781083.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h2vc3 a.118.1.14 (C:481-790) 15.7 35 0.0025 13.7 5.6 58 14-72 62-119 (310)
2 d1wu9a1 a.245.1.1 (A:191-249) 9.4 55 0.004 12.5 2.5 21 92-115 12-32 (59)
3 d1aila_ a.16.1.1 (A:) N-termin 7.3 68 0.005 12.0 2.5 19 14-34 7-25 (70)
4 d1o6ba_ c.26.1.3 (A:) Phosphop 6.1 79 0.0058 11.6 1.6 27 37-63 24-50 (163)
5 d1e5pa_ b.60.1.1 (A:) Aphrodis 5.3 88 0.0064 11.4 2.4 22 35-58 118-139 (149)
6 d2pa2a1 d.41.4.1 (A:40-176) Ri 4.9 95 0.0069 11.2 1.8 41 96-137 22-62 (137)
7 d1d2za_ a.77.1.2 (A:) Pelle de 4.7 98 0.0071 11.1 2.7 70 28-97 15-94 (102)
8 d1f06a2 d.81.1.3 (A:119-268) D 4.6 77 0.0056 11.7 -0.0 22 98-119 89-110 (150)
9 d1dzka_ b.60.1.1 (A:) Odorant- 4.1 1.1E+02 0.0079 10.9 2.4 15 35-49 117-131 (148)
10 d1vgga_ d.256.1.1 (A:) Hypothe 3.8 86 0.0063 11.4 -0.3 38 23-69 21-60 (161)
No 1
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.66 E-value=35 Score=13.68 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999971121688999999999999874666888511345667776643312
Q gi|254781083|r 14 VSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSSSVRRTYWSERGD 72 (160)
Q Consensus 14 vsilvfcfvshfvqrksfadvhealerykkvarvvgphipnsnvfsssvrrtywsergd 72 (160)
++|-||--.--++.-|||..+.-+++||+.+-+-+++--......-.++ -.||.....
T Consensus 62 ~~i~vfvqtll~~GSKSfSH~~~~lery~~~lk~l~~~~~~q~~il~~v-~~~W~~~~q 119 (310)
T d1h2vc3 62 LKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVM-FEVWRNHPQ 119 (310)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHTHHHHHHHTSSHHHHHHHHHHH-HHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHCCCC
T ss_conf 6799999999998165299999999999999998837777899999999-999805975
No 2
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.40 E-value=55 Score=12.54 Aligned_cols=21 Identities=48% Similarity=0.773 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCH
Q ss_conf 999875677865666667986440
Q gi|254781083|r 92 YLKTRLSDLEAHRRSMSFYFAKYP 115 (160)
Q Consensus 92 ylktrlsdleahrrsmsfyfakyp 115 (160)
-||..+.+||.-| .|||.|--
T Consensus 12 elk~~v~~lEkER---dFYF~KLR 32 (59)
T d1wu9a1 12 VLKLTVEDLEKER---DFYFGKLR 32 (59)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHH
T ss_conf 9999999999999---89999999
No 3
>d1aila_ a.16.1.1 (A:) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza A virus [TaxId: 11320]}
Probab=7.27 E-value=68 Score=11.99 Aligned_cols=19 Identities=42% Similarity=0.599 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999711216889
Q gi|254781083|r 14 VSILVFCFVSHFVQRKSFADV 34 (160)
Q Consensus 14 vsilvfcfvshfvqrksfadv 34 (160)
-|..|-||.-|. ||-|||-
T Consensus 7 sSfqvdcfLWHv--Rkrfad~ 25 (70)
T d1aila_ 7 SSFQVDCFLWHV--RKQVVDQ 25 (70)
T ss_dssp HHHHHHHHHHHH--HHHHHHT
T ss_pred CHHHHHHHHHHH--HHHHHHC
T ss_conf 132224688999--9987550
No 4
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=6.07 E-value=79 Score=11.63 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 999999999874666888511345667
Q gi|254781083|r 37 ALERYKKVARVVGPHIPNSNVFSSSVR 63 (160)
Q Consensus 37 alerykkvarvvgphipnsnvfsssvr 63 (160)
|++++.+|--++++.-+..+.++..-|
T Consensus 24 a~~~~D~v~v~~~~~~~~~~~~~~~~r 50 (163)
T d1o6ba_ 24 GAHIFEQVYVCVLNNSSKKPLFSVEER 50 (163)
T ss_dssp HHHHSSEEEEEECCCCSSCCSSCHHHH
T ss_pred HHHHCCEEEECCCCCCCCCCCCCHHHH
T ss_conf 998689778703532222235899999
No 5
>d1e5pa_ b.60.1.1 (A:) Aphrodisin, a sex pheromone {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=5.34 E-value=88 Score=11.37 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 999999999998746668885113
Q gi|254781083|r 35 HEALERYKKVARVVGPHIPNSNVF 58 (160)
Q Consensus 35 healerykkvarvvgphipnsnvf 58 (160)
.|++|++++.+.-.| |+..|++
T Consensus 118 ~e~~e~F~~~~~~~G--l~~e~Ii 139 (149)
T d1e5pa_ 118 PEENEILVQFAHEKK--IPVENIL 139 (149)
T ss_dssp HHHHHHHHHHHHHTT--CCGGGEE
T ss_pred HHHHHHHHHHHHHCC--CCHHHEE
T ss_conf 999999999999849--8989969
No 6
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.87 E-value=95 Score=11.19 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHCCCCCHHEECCCHHHHHHHH
Q ss_conf 756778656666679864402208210101143034312220
Q gi|254781083|r 96 RLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHLVKEDK 137 (160)
Q Consensus 96 rlsdleahrrsmsfyfakypkkvgpsvidvvyphshlvkedk 137 (160)
+-..|||-|+.+.=|..|.-.+-+--+.--+|||- .+.+.+
T Consensus 22 ~~~~iEAaR~ai~r~l~k~~gk~~~~~~irvfP~~-~l~~k~ 62 (137)
T d2pa2a1 22 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFH-VIRINK 62 (137)
T ss_dssp EHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC--------
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-CEEECC
T ss_conf 68899999999999888752657747999976883-066060
No 7
>d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=4.69 E-value=98 Score=11.11 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH---------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12168899999999999987466688851134566---------77766433-127888765465333225999999875
Q gi|254781083|r 28 RKSFADVHEALERYKKVARVVGPHIPNSNVFSSSV---------RRTYWSER-GDIINALDQDLQDVESIEVFEYLKTRL 97 (160)
Q Consensus 28 rksfadvhealerykkvarvvgphipnsnvfsssv---------rrtywser-gdiinaldqdlqdvesievfeylktrl 97 (160)
|+..+........+++.|...|--...-..|.... --..|+.+ +-.|+.|-+-|+..+-..+-+-++.-+
T Consensus 15 r~~L~~~Ld~~~~Wr~LA~~Lg~~~~~I~~i~~~~~~~~Spt~~lL~~W~~~~~~Tv~~L~~~L~~~~~~da~~~i~~~~ 94 (102)
T d1d2za_ 15 RAQLCAHLDALDVWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLFALFKKLKLHNAMRLIKDYV 94 (102)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCBHHHHHHHHHHTTCHHHHHHTGGGS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999872894549999999499999999998634679974999999998368981999999999968399999999998
No 8
>d1f06a2 d.81.1.3 (A:119-268) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}
Probab=4.55 E-value=77 Score=11.68 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHCHHHCC
Q ss_conf 6778656666679864402208
Q gi|254781083|r 98 SDLEAHRRSMSFYFAKYPKKVG 119 (160)
Q Consensus 98 sdleahrrsmsfyfakypkkvg 119 (160)
..++..-++|.-||+.|...|-
T Consensus 89 ~~v~~~Ik~mP~YFa~ydT~V~ 110 (150)
T d1f06a2 89 ERIENDIRTMPDYFVGYEVEVN 110 (150)
T ss_dssp HHHHHHHHTCTTTTTTSEEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCEEE
T ss_conf 9999998508564478875899
No 9
>d1dzka_ b.60.1.1 (A:) Odorant-binding protein {Pig (Sus scrofa) [TaxId: 9823]}
Probab=4.13 E-value=1.1e+02 Score=10.86 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999998746
Q gi|254781083|r 35 HEALERYKKVARVVG 49 (160)
Q Consensus 35 healerykkvarvvg 49 (160)
.|++|+|++.++-.|
T Consensus 117 ~e~~e~F~~~~~~~G 131 (148)
T d1dzka_ 117 DQDLEKFKEVTRENG 131 (148)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999999859
No 10
>d1vgga_ d.256.1.1 (A:) Hypothetical protein TT1634 (TTHA1091) {Thermus thermophilus [TaxId: 274]}
Probab=3.82 E-value=86 Score=11.42 Aligned_cols=38 Identities=37% Similarity=0.405 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH--HHHHHHHHH
Q ss_conf 99971121688999999999999874666888511345--667776643
Q gi|254781083|r 23 SHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSS--SVRRTYWSE 69 (160)
Q Consensus 23 shfvqrksfadvhealerykkvarvvgphipnsnvfss--svrrtywse 69 (160)
||| -|+-.|.||||.. ..|.|.-.-.|.. .-|-.-|+-
T Consensus 21 sHF--IKTVEDl~Ealv~-------svp~ikFGiAFcEASG~~LvR~~G 60 (161)
T d1vgga_ 21 AHF--IKTVEDLHEALVT-------AVPGIRFGLAFSEASGKRLVRRSG 60 (161)
T ss_dssp CCS--TTHHHHHHHHHHH-------HSTTCCEEEEEECCSTTCEEEEEE
T ss_pred CCC--CCCHHHHHHHHHH-------CCCCCEEEEEEECCCCCEEEEECC
T ss_conf 511--0639899999974-------389865889982167863788418
Done!