Query gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 160 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:16:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781083.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1h2vc3 a.118.1.14 (C:481-790) 15.7 35 0.0025 13.7 5.6 58 14-72 62-119 (310) 2 d1wu9a1 a.245.1.1 (A:191-249) 9.4 55 0.004 12.5 2.5 21 92-115 12-32 (59) 3 d1aila_ a.16.1.1 (A:) N-termin 7.3 68 0.005 12.0 2.5 19 14-34 7-25 (70) 4 d1o6ba_ c.26.1.3 (A:) Phosphop 6.1 79 0.0058 11.6 1.6 27 37-63 24-50 (163) 5 d1e5pa_ b.60.1.1 (A:) Aphrodis 5.3 88 0.0064 11.4 2.4 22 35-58 118-139 (149) 6 d2pa2a1 d.41.4.1 (A:40-176) Ri 4.9 95 0.0069 11.2 1.8 41 96-137 22-62 (137) 7 d1d2za_ a.77.1.2 (A:) Pelle de 4.7 98 0.0071 11.1 2.7 70 28-97 15-94 (102) 8 d1f06a2 d.81.1.3 (A:119-268) D 4.6 77 0.0056 11.7 -0.0 22 98-119 89-110 (150) 9 d1dzka_ b.60.1.1 (A:) Odorant- 4.1 1.1E+02 0.0079 10.9 2.4 15 35-49 117-131 (148) 10 d1vgga_ d.256.1.1 (A:) Hypothe 3.8 86 0.0063 11.4 -0.3 38 23-69 21-60 (161) No 1 >d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Probab=15.66 E-value=35 Score=13.68 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=37.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99999999999971121688999999999999874666888511345667776643312 Q gi|254781083|r 14 VSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSSSVRRTYWSERGD 72 (160) Q Consensus 14 vsilvfcfvshfvqrksfadvhealerykkvarvvgphipnsnvfsssvrrtywsergd 72 (160) ++|-||--.--++.-|||..+.-+++||+.+-+-+++--......-.++ -.||..... T Consensus 62 ~~i~vfvqtll~~GSKSfSH~~~~lery~~~lk~l~~~~~~q~~il~~v-~~~W~~~~q 119 (310) T d1h2vc3 62 LKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVM-FEVWRNHPQ 119 (310) T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHTHHHHHHHTSSHHHHHHHHHHH-HHHHTTCHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHCCCC T ss_conf 6799999999998165299999999999999998837777899999999-999805975 No 2 >d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]} Probab=9.40 E-value=55 Score=12.54 Aligned_cols=21 Identities=48% Similarity=0.773 Sum_probs=13.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCH Q ss_conf 999875677865666667986440 Q gi|254781083|r 92 YLKTRLSDLEAHRRSMSFYFAKYP 115 (160) Q Consensus 92 ylktrlsdleahrrsmsfyfakyp 115 (160) -||..+.+||.-| .|||.|-- T Consensus 12 elk~~v~~lEkER---dFYF~KLR 32 (59) T d1wu9a1 12 VLKLTVEDLEKER---DFYFGKLR 32 (59) T ss_dssp HHHHHHHHHHHHH---HHHHHHHH T ss_pred HHHHHHHHHHHHH---HHHHHHHH T ss_conf 9999999999999---89999999 No 3 >d1aila_ a.16.1.1 (A:) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza A virus [TaxId: 11320]} Probab=7.27 E-value=68 Score=11.99 Aligned_cols=19 Identities=42% Similarity=0.599 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999711216889 Q gi|254781083|r 14 VSILVFCFVSHFVQRKSFADV 34 (160) Q Consensus 14 vsilvfcfvshfvqrksfadv 34 (160) -|..|-||.-|. ||-|||- T Consensus 7 sSfqvdcfLWHv--Rkrfad~ 25 (70) T d1aila_ 7 SSFQVDCFLWHV--RKQVVDQ 25 (70) T ss_dssp HHHHHHHHHHHH--HHHHHHT T ss_pred CHHHHHHHHHHH--HHHHHHC T ss_conf 132224688999--9987550 No 4 >d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Probab=6.07 E-value=79 Score=11.63 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=9.1 Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHH Q ss_conf 999999999874666888511345667 Q gi|254781083|r 37 ALERYKKVARVVGPHIPNSNVFSSSVR 63 (160) Q Consensus 37 alerykkvarvvgphipnsnvfsssvr 63 (160) |++++.+|--++++.-+..+.++..-| T Consensus 24 a~~~~D~v~v~~~~~~~~~~~~~~~~r 50 (163) T d1o6ba_ 24 GAHIFEQVYVCVLNNSSKKPLFSVEER 50 (163) T ss_dssp HHHHSSEEEEEECCCCSSCCSSCHHHH T ss_pred HHHHCCEEEECCCCCCCCCCCCCHHHH T ss_conf 998689778703532222235899999 No 5 >d1e5pa_ b.60.1.1 (A:) Aphrodisin, a sex pheromone {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Probab=5.34 E-value=88 Score=11.37 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=12.7 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 999999999998746668885113 Q gi|254781083|r 35 HEALERYKKVARVVGPHIPNSNVF 58 (160) Q Consensus 35 healerykkvarvvgphipnsnvf 58 (160) .|++|++++.+.-.| |+..|++ T Consensus 118 ~e~~e~F~~~~~~~G--l~~e~Ii 139 (149) T d1e5pa_ 118 PEENEILVQFAHEKK--IPVENIL 139 (149) T ss_dssp HHHHHHHHHHHHHTT--CCGGGEE T ss_pred HHHHHHHHHHHHHCC--CCHHHEE T ss_conf 999999999999849--8989969 No 6 >d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Probab=4.87 E-value=95 Score=11.19 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=25.7 Q ss_pred HHHHHHHHHHHHHHHHHHCHHHCCCCCHHEECCCHHHHHHHH Q ss_conf 756778656666679864402208210101143034312220 Q gi|254781083|r 96 RLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHLVKEDK 137 (160) Q Consensus 96 rlsdleahrrsmsfyfakypkkvgpsvidvvyphshlvkedk 137 (160) +-..|||-|+.+.=|..|.-.+-+--+.--+|||- .+.+.+ T Consensus 22 ~~~~iEAaR~ai~r~l~k~~gk~~~~~~irvfP~~-~l~~k~ 62 (137) T d2pa2a1 22 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFH-VIRINK 62 (137) T ss_dssp EHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC-------- T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-CEEECC T ss_conf 68899999999999888752657747999976883-066060 No 7 >d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]} Probab=4.69 E-value=98 Score=11.11 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=33.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH---------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 12168899999999999987466688851134566---------77766433-127888765465333225999999875 Q gi|254781083|r 28 RKSFADVHEALERYKKVARVVGPHIPNSNVFSSSV---------RRTYWSER-GDIINALDQDLQDVESIEVFEYLKTRL 97 (160) Q Consensus 28 rksfadvhealerykkvarvvgphipnsnvfsssv---------rrtywser-gdiinaldqdlqdvesievfeylktrl 97 (160) |+..+........+++.|...|--...-..|.... --..|+.+ +-.|+.|-+-|+..+-..+-+-++.-+ T Consensus 15 r~~L~~~Ld~~~~Wr~LA~~Lg~~~~~I~~i~~~~~~~~Spt~~lL~~W~~~~~~Tv~~L~~~L~~~~~~da~~~i~~~~ 94 (102) T d1d2za_ 15 RAQLCAHLDALDVWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLFALFKKLKLHNAMRLIKDYV 94 (102) T ss_dssp HHHHHHHHHHHTCHHHHHHHTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCBHHHHHHHHHHTTCHHHHHHTGGGS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 99999872894549999999499999999998634679974999999998368981999999999968399999999998 No 8 >d1f06a2 d.81.1.3 (A:119-268) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Probab=4.55 E-value=77 Score=11.68 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHHHHHHCHHHCC Q ss_conf 6778656666679864402208 Q gi|254781083|r 98 SDLEAHRRSMSFYFAKYPKKVG 119 (160) Q Consensus 98 sdleahrrsmsfyfakypkkvg 119 (160) ..++..-++|.-||+.|...|- T Consensus 89 ~~v~~~Ik~mP~YFa~ydT~V~ 110 (150) T d1f06a2 89 ERIENDIRTMPDYFVGYEVEVN 110 (150) T ss_dssp HHHHHHHHTCTTTTTTSEEEEE T ss_pred HHHHHHHHCCCCCCCCCCCEEE T ss_conf 9999998508564478875899 No 9 >d1dzka_ b.60.1.1 (A:) Odorant-binding protein {Pig (Sus scrofa) [TaxId: 9823]} Probab=4.13 E-value=1.1e+02 Score=10.86 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 999999999998746 Q gi|254781083|r 35 HEALERYKKVARVVG 49 (160) Q Consensus 35 healerykkvarvvg 49 (160) .|++|+|++.++-.| T Consensus 117 ~e~~e~F~~~~~~~G 131 (148) T d1dzka_ 117 DQDLEKFKEVTRENG 131 (148) T ss_dssp HHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHCC T ss_conf 999999999999859 No 10 >d1vgga_ d.256.1.1 (A:) Hypothetical protein TT1634 (TTHA1091) {Thermus thermophilus [TaxId: 274]} Probab=3.82 E-value=86 Score=11.42 Aligned_cols=38 Identities=37% Similarity=0.405 Sum_probs=23.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH--HHHHHHHHH Q ss_conf 99971121688999999999999874666888511345--667776643 Q gi|254781083|r 23 SHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSS--SVRRTYWSE 69 (160) Q Consensus 23 shfvqrksfadvhealerykkvarvvgphipnsnvfss--svrrtywse 69 (160) ||| -|+-.|.||||.. ..|.|.-.-.|.. .-|-.-|+- T Consensus 21 sHF--IKTVEDl~Ealv~-------svp~ikFGiAFcEASG~~LvR~~G 60 (161) T d1vgga_ 21 AHF--IKTVEDLHEALVT-------AVPGIRFGLAFSEASGKRLVRRSG 60 (161) T ss_dssp CCS--TTHHHHHHHHHHH-------HSTTCCEEEEEECCSTTCEEEEEE T ss_pred CCC--CCCHHHHHHHHHH-------CCCCCEEEEEEECCCCCEEEEECC T ss_conf 511--0639899999974-------389865889982167863788418 Done!