BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781083|ref|YP_003065496.1| hypothetical protein
CLIBASIA_04925 [Candidatus Liberibacter asiaticus str. psy62]
(160 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040760|gb|ACT57556.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 160
Score = 328 bits (840), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MTYLSVTWNDLVQVSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSS 60
MTYLSVTWNDLVQVSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSS
Sbjct: 1 MTYLSVTWNDLVQVSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSS 60
Query: 61 SVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGP 120
SVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGP
Sbjct: 61 SVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGP 120
Query: 121 SVIDVVYPHSHLVKEDKVDEKNSSSELKVDLNKLNAPGSP 160
SVIDVVYPHSHLVKEDKVDEKNSSSELKVDLNKLNAPGSP
Sbjct: 121 SVIDVVYPHSHLVKEDKVDEKNSSSELKVDLNKLNAPGSP 160
>gi|296127974|ref|YP_003635224.1| 5-methyltetrahydropteroyltriglutamate/homocystei
neS-methyltransferase [Cellulomonas flavigena DSM 20109]
gi|296019789|gb|ADG73025.1| 5-methyltetrahydropteroyltriglutamate/homocystei
neS-methyltransferase [Cellulomonas flavigena DSM 20109]
Length = 783
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 67 WSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVV 126
+SE G+I+ A+D DV SIE L D+ A A YP+ VGP V D+
Sbjct: 673 YSEFGEIMEAIDGLDADVTSIEAARSKMEILGDIAA---------AGYPRAVGPGVYDIH 723
Query: 127 YPHSHLVKEDKVDEKNSSSELKVDLNKL 154
P + +D+V E + + +D+++L
Sbjct: 724 SP--RVPSQDEVTELLTEAVRTIDVDQL 749
>gi|332672206|ref|YP_004455214.1| 5-methyltetrahydropteroyltriglutamate/homocysteine
S-methyltransferase [Cellulomonas fimi ATCC 484]
gi|332341244|gb|AEE47827.1| 5-methyltetrahydropteroyltriglutamate/homocysteine
S-methyltransferase [Cellulomonas fimi ATCC 484]
Length = 773
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 67 WSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVV 126
+SE G+II A+D DV SIE L D+ A YP+ VGP V D+
Sbjct: 663 YSEFGEIIGAIDGLDADVTSIEAARSKMEILGDIAG---------AGYPRAVGPGVYDIH 713
Query: 127 YPHSHLVKEDKVDEKNSSSELKVDLNKL 154
P + E +V+E + + + L++L
Sbjct: 714 SP--RVPSEGEVEELLTEAVRSIALDQL 739
>gi|81427920|ref|YP_394919.1| putative drug resistance ABC transporter, two ATP-binding subunits
[Lactobacillus sakei subsp. sakei 23K]
gi|78609561|emb|CAI54607.1| Putative drug resistance ABC transporter, two ATP-binding subunits
[Lactobacillus sakei subsp. sakei 23K]
Length = 514
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 74 INALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVID 124
I LDQ + + +FE+LKT +DL A MS Y+A Y + +++
Sbjct: 68 IGYLDQYAKLAPGLSIFEFLKTAFADLYAQEERMSQYYADYATSLDDQLLE 118
>gi|322371540|ref|ZP_08046086.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus
DX253]
gi|320548831|gb|EFW90499.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus
DX253]
Length = 895
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 45 ARVVGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHR 104
A V PN+ +RR Y E DII++ +++L+ +++ E +T +S L+ R
Sbjct: 414 AEAVAEDPPNTVTQGGLLRRGYDEELDDIIDSHEENLEWFDTLADREKSRTGISHLQVDR 473
Query: 105 RSMSFYFAKYPKKVGPSVIDVVYPHSHLVKEDKVDEKNSSSELK 148
Y+ +VG S D V VK K E+ + EL+
Sbjct: 474 NKTDGYYL----QVGKSDTDKVPEEYEAVKTLKNSERYVTDELR 513
>gi|226222940|ref|YP_002757047.1| low specificity L-allo-threonine aldolase [Listeria monocytogenes
Clip81459]
gi|254932539|ref|ZP_05265898.1| threonine aldolase [Listeria monocytogenes HPB2262]
gi|225875402|emb|CAS04099.1| Putative low specificity L-allo-threonine aldolase [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|293584096|gb|EFF96128.1| threonine aldolase [Listeria monocytogenes HPB2262]
gi|332310730|gb|EGJ23825.1| Threonine aldolase family protein [Listeria monocytogenes str.
Scott A]
Length = 362
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 39 ERYKKVARV-VGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRL 97
ER+ + V P +P SN+F Y+ + D I A+ +QD + + YL+ +
Sbjct: 271 ERFNSCSGVKTVPEVPVSNMF-----HVYFEKSADEIGAILTKIQDETGVGISGYLQEKS 325
Query: 98 SDLEAHRRSMSFYFAKYPKKVGPSVIDVVY 127
+D+ A S+ FA+ P + ++DVV+
Sbjct: 326 ADVCAFEVSVGDAFAEIPVE----ILDVVF 351
>gi|195454310|ref|XP_002074183.1| GK12757 [Drosophila willistoni]
gi|194170268|gb|EDW85169.1| GK12757 [Drosophila willistoni]
Length = 293
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 35 HEALERYKKVARVVGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLK 94
+EALE+Y+ V+ I ++ +R + I+ A L+ ++ E+ EYLK
Sbjct: 95 YEALEQYEDAEEVLNAIIAKDETNAAPRKR-----KIAILKACGNRLEAIK--ELNEYLK 147
Query: 95 TRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVY---PHSHLVKE 135
+SD EA S Y A+ ++ V PHSHL+ +
Sbjct: 148 KFMSDQEAWHELCSLYLAEAEYGKAAFCMEEVLLHNPHSHLIHQ 191
>gi|328476062|gb|EGF46775.1| low specificity L-allo-threonine aldolase [Listeria monocytogenes
220]
Length = 351
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 39 ERYKKVARV-VGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRL 97
ER+ + V P +P SN+F Y+ + D I A+ +QD + + YL+ +
Sbjct: 271 ERFNSCSGVKTVPEVPVSNMF-----HVYFEKSADEIGAILTKIQDETGVGISGYLQEKS 325
Query: 98 SDLEAHRRSMSFYFAKYPKKVGPSVIDVVY 127
+D+ A S+ FA+ P + ++DVV+
Sbjct: 326 ADVCAFEVSVGDAFAEIPVE----ILDVVF 351
>gi|254994494|ref|ZP_05276684.1| hypothetical protein LmonocytoFSL_17037 [Listeria monocytogenes FSL
J2-064]
Length = 253
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 39 ERYKKVARV-VGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRL 97
ER+ + V P +P SN+F Y+ + D I A+ +QD + + YL+ +
Sbjct: 164 ERFNSCSGVKTVPEVPVSNMF-----HVYFEKSADEIGAILTKIQDETGVGISGYLQEKS 218
Query: 98 SDLEAHRRSMSFYFAKYPKK 117
+D+ A S+ FA+ P K
Sbjct: 219 ADVCAFEVSVGDAFAEIPAK 238
>gi|145550874|ref|XP_001461115.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124428947|emb|CAK93734.1| unnamed protein product [Paramecium tetraurelia]
Length = 247
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 13 QVSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSSSVRRTYWSERGD 72
Q+S++ FCF+ FV +F + + E K +V +I N + ++ + S+ G
Sbjct: 148 QISLIDFCFIPIFVNLNAFKPIIQQCELTKNFTKVSNSNIQQFNKYGETILQLPCSKAGK 207
Query: 73 IINALDQDLQDVESIE 88
+ D +L VE +E
Sbjct: 208 V---PDYELLIVEGVE 220
>gi|16802351|ref|NP_463836.1| hypothetical protein lmo0305 [Listeria monocytogenes EGD-e]
gi|16409670|emb|CAD00832.1| lmo0305 [Listeria monocytogenes EGD-e]
Length = 358
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 39 ERYKKVARV-VGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRL 97
ER+ + V P +P SN+F Y+ D I A+ +QD + + YL+ +
Sbjct: 271 ERFNSCSGVKTVPEVPVSNMF-----HVYFENSADEIGAILTKIQDETGVGISGYLQEKS 325
Query: 98 SDLEAHRRSMSFYFAKYPKK 117
+D+ A S+ FA+ P K
Sbjct: 326 ADVCAFEVSVGDAFAEIPAK 345
>gi|47091441|ref|ZP_00229238.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
gi|47020118|gb|EAL10854.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
Length = 360
Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 50 PHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSF 109
P +P SN+F Y+ + D I A+ +QD + + YL+ + +D+ A S+
Sbjct: 283 PEVPVSNMF-----HVYFEKSADEIGAVLTKIQDETGVGISGYLQEKSADVCAFEVSVGD 337
Query: 110 YFAKYPKK 117
FA+ P K
Sbjct: 338 AFAEIPAK 345
>gi|328467914|gb|EGF38954.1| hypothetical protein LM1816_09280 [Listeria monocytogenes 1816]
Length = 360
Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 50 PHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSF 109
P +P SN+F Y+ + D I A+ +QD + + YL+ + +D+ A S+
Sbjct: 283 PEVPVSNMF-----HVYFEKSADEIGAVLTKIQDETGVGISGYLQEKSADVCAFEVSVGD 337
Query: 110 YFAKYPKK 117
FA+ P K
Sbjct: 338 AFAEIPAK 345
>gi|224502402|ref|ZP_03670709.1| hypothetical protein LmonFR_07754 [Listeria monocytogenes FSL
R2-561]
gi|255029749|ref|ZP_05301700.1| hypothetical protein LmonL_13014 [Listeria monocytogenes LO28]
Length = 358
Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 39 ERYKKVARV-VGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRL 97
ER+ + V P +P SN+F Y+ D I A+ +QD + + YL+ +
Sbjct: 271 ERFNSCSGVKTVPEVPVSNMF-----HVYFENSADEIGAILTKIQDETGVGISGYLQEKS 325
Query: 98 SDLEAHRRSMSFYFAKYPKK 117
+D+ A S+ FA+ P K
Sbjct: 326 ADVCAFEVSVGDAFAEIPAK 345
>gi|313625242|gb|EFR95080.1| threonine aldolase family protein [Listeria innocua FSL J1-023]
Length = 358
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 39 ERYKKVARV-VGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRL 97
ER+ + V P +P SN+F Y+ + D + A+ +QD + + YL+ +
Sbjct: 271 ERFNSCSGVKTVPEVPVSNMF-----HVYFEKSADEVGAILTKIQDETGVGISGYLQEKS 325
Query: 98 SDLEAHRRSMSFYFAKYPKK 117
+D+ A S+ FA+ P K
Sbjct: 326 ADVCAFEVSVGDAFAEIPAK 345
>gi|217965599|ref|YP_002351277.1| threonine aldolase family protein [Listeria monocytogenes HCC23]
gi|217334869|gb|ACK40663.1| threonine aldolase family protein [Listeria monocytogenes HCC23]
gi|307569850|emb|CAR83029.1| threonine aldolase family protein [Listeria monocytogenes L99]
Length = 360
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 39 ERYKKVARV-VGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRL 97
ER+ + V P +P SN+F Y+ + D I A+ +QD + + YL+ +
Sbjct: 271 ERFNSCSGVKTVPEVPVSNMF-----HVYFEKSADEIGAILTKIQDETGVGISGYLQEKS 325
Query: 98 SDLEAHRRSMSFYFAKYPKKVGPSVIDVV 126
+D+ A S+ FA+ P ++ S + +
Sbjct: 326 ADVCAFEVSVGDAFAEIPVEILESAFECL 354
>gi|284800604|ref|YP_003412469.1| hypothetical protein LM5578_0351 [Listeria monocytogenes 08-5578]
gi|284993790|ref|YP_003415558.1| hypothetical protein LM5923_0350 [Listeria monocytogenes 08-5923]
gi|284056166|gb|ADB67107.1| hypothetical protein LM5578_0351 [Listeria monocytogenes 08-5578]
gi|284059257|gb|ADB70196.1| hypothetical protein LM5923_0350 [Listeria monocytogenes 08-5923]
Length = 362
Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 39 ERYKKVARV-VGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRL 97
ER+ + V P +P SN+F Y+ + D + A+ +QD + + YL+ +
Sbjct: 271 ERFNSCSGVKTVPEVPVSNIF-----HVYFEKSADEVGAILTKIQDETGVGISGYLQEKS 325
Query: 98 SDLEAHRRSMSFYFAKYPKKV 118
+D+ A S+ FA+ P ++
Sbjct: 326 ADVCAFEVSVGDAFAEIPVEI 346
>gi|255025192|ref|ZP_05297178.1| low specificity L-allo-threonine aldolase [Listeria monocytogenes
FSL J2-003]
Length = 362
Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 50 PHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSF 109
P +P SN+F Y+ + D + A+ +QD + + YL+ + +D+ A S+
Sbjct: 283 PEVPVSNMF-----HVYFEKSADEVGAILTKIQDETRVGISGYLQEKSADVCAFEVSVGD 337
Query: 110 YFAKYPKKV 118
FAK P ++
Sbjct: 338 AFAKIPVEI 346
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040760|gb|ACT57556.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 160
Score = 332 bits (852), Expect = 8e-90, Method: Composition-based stats.
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MTYLSVTWNDLVQVSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSS 60
MTYLSVTWNDLVQVSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSS
Sbjct: 1 MTYLSVTWNDLVQVSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSS 60
Query: 61 SVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGP 120
SVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGP
Sbjct: 61 SVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGP 120
Query: 121 SVIDVVYPHSHLVKEDKVDEKNSSSELKVDLNKLNAPGSP 160
SVIDVVYPHSHLVKEDKVDEKNSSSELKVDLNKLNAPGSP
Sbjct: 121 SVIDVVYPHSHLVKEDKVDEKNSSSELKVDLNKLNAPGSP 160
>gi|296127974|ref|YP_003635224.1| 5-methyltetrahydropteroyltriglutamate/homocystei
neS-methyltransferase [Cellulomonas flavigena DSM 20109]
gi|296019789|gb|ADG73025.1| 5-methyltetrahydropteroyltriglutamate/homocystei
neS-methyltransferase [Cellulomonas flavigena DSM 20109]
Length = 783
Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 67 WSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVV 126
+SE G+I+ A+D DV SIE L D+ A A YP+ VGP V D+
Sbjct: 673 YSEFGEIMEAIDGLDADVTSIEAARSKMEILGDIAA---------AGYPRAVGPGVYDIH 723
Query: 127 YPHSHLVKEDKVDEKNSSSELKVDLNKL 154
P + +D+V E + + +D+++L
Sbjct: 724 SP--RVPSQDEVTELLTEAVRTIDVDQL 749
>gi|322371540|ref|ZP_08046086.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus
DX253]
gi|320548831|gb|EFW90499.1| DNA mismatch repair protein MutS [Haladaptatus paucihalophilus
DX253]
Length = 895
Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 45 ARVVGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHR 104
A V PN+ +RR Y E DII++ +++L+ +++ E +T +S L+ R
Sbjct: 414 AEAVAEDPPNTVTQGGLLRRGYDEELDDIIDSHEENLEWFDTLADREKSRTGISHLQVDR 473
Query: 105 RSMSFYFAKYPKKVGPSVIDVVYPHSHLVKEDKVDEKNSSSELK 148
Y+ +VG S D V VK K E+ + EL+
Sbjct: 474 NKTDGYYL----QVGKSDTDKVPEEYEAVKTLKNSERYVTDELR 513
>gi|332672206|ref|YP_004455214.1| 5-methyltetrahydropteroyltriglutamate/homocysteine
S-methyltransferase [Cellulomonas fimi ATCC 484]
gi|332341244|gb|AEE47827.1| 5-methyltetrahydropteroyltriglutamate/homocysteine
S-methyltransferase [Cellulomonas fimi ATCC 484]
Length = 773
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 67 WSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVV 126
+SE G+II A+D DV SIE L D+ A YP+ VGP V D+
Sbjct: 663 YSEFGEIIGAIDGLDADVTSIEAARSKMEILGDIAG---------AGYPRAVGPGVYDIH 713
Query: 127 YPHSHLVKEDKVDEKNSSSELKVDLNKL 154
P + E +V+E + + + L++L
Sbjct: 714 SP--RVPSEGEVEELLTEAVRSIALDQL 739
>gi|81427920|ref|YP_394919.1| putative drug resistance ABC transporter, two ATP-binding subunits
[Lactobacillus sakei subsp. sakei 23K]
gi|78609561|emb|CAI54607.1| Putative drug resistance ABC transporter, two ATP-binding subunits
[Lactobacillus sakei subsp. sakei 23K]
Length = 514
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 74 INALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKY 114
I LDQ + + +FE+LKT +DL A MS Y+A Y
Sbjct: 68 IGYLDQYAKLAPGLSIFEFLKTAFADLYAQEERMSQYYADY 108
>gi|328476062|gb|EGF46775.1| low specificity L-allo-threonine aldolase [Listeria monocytogenes
220]
Length = 351
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 39 ERYKKVARV-VGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRL 97
ER+ + V P +P SN+F Y+ + D I A+ +QD + + YL+ +
Sbjct: 271 ERFNSCSGVKTVPEVPVSNMF-----HVYFEKSADEIGAILTKIQDETGVGISGYLQEKS 325
Query: 98 SDLEAHRRSMSFYFAKYPKKVGPSVIDVVY 127
+D+ A S+ FA+ P + ++DVV+
Sbjct: 326 ADVCAFEVSVGDAFAEIPVE----ILDVVF 351
>gi|226222940|ref|YP_002757047.1| low specificity L-allo-threonine aldolase [Listeria monocytogenes
Clip81459]
gi|254932539|ref|ZP_05265898.1| threonine aldolase [Listeria monocytogenes HPB2262]
gi|225875402|emb|CAS04099.1| Putative low specificity L-allo-threonine aldolase [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|293584096|gb|EFF96128.1| threonine aldolase [Listeria monocytogenes HPB2262]
gi|332310730|gb|EGJ23825.1| Threonine aldolase family protein [Listeria monocytogenes str.
Scott A]
Length = 362
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 39 ERYKKVARV-VGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRL 97
ER+ + V P +P SN+F Y+ + D I A+ +QD + + YL+ +
Sbjct: 271 ERFNSCSGVKTVPEVPVSNMF-----HVYFEKSADEIGAILTKIQDETGVGISGYLQEKS 325
Query: 98 SDLEAHRRSMSFYFAKYPKKVGPSVIDVVY 127
+D+ A S+ FA+ P + ++DVV+
Sbjct: 326 ADVCAFEVSVGDAFAEIPVE----ILDVVF 351
>gi|195454310|ref|XP_002074183.1| GK12757 [Drosophila willistoni]
gi|194170268|gb|EDW85169.1| GK12757 [Drosophila willistoni]
Length = 293
Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 35 HEALERYKKVARVVGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLK 94
+EALE+Y+ V+ I ++ +R + I+ A L+ ++ E+ EYLK
Sbjct: 95 YEALEQYEDAEEVLNAIIAKDETNAAPRKR-----KIAILKACGNRLEAIK--ELNEYLK 147
Query: 95 TRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVY---PHSHLVKE 135
+SD EA S Y A+ ++ V PHSHL+ +
Sbjct: 148 KFMSDQEAWHELCSLYLAEAEYGKAAFCMEEVLLHNPHSHLIHQ 191
>gi|254994494|ref|ZP_05276684.1| hypothetical protein LmonocytoFSL_17037 [Listeria monocytogenes FSL
J2-064]
Length = 253
Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 39 ERYKKVARV-VGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRL 97
ER+ + V P +P SN+F Y+ + D I A+ +QD + + YL+ +
Sbjct: 164 ERFNSCSGVKTVPEVPVSNMF-----HVYFEKSADEIGAILTKIQDETGVGISGYLQEKS 218
Query: 98 SDLEAHRRSMSFYFAKYPKK 117
+D+ A S+ FA+ P K
Sbjct: 219 ADVCAFEVSVGDAFAEIPAK 238
>gi|91216043|ref|ZP_01253012.1| hypothetical protein P700755_15951 [Psychroflexus torquis ATCC
700755]
gi|91186020|gb|EAS72394.1| hypothetical protein P700755_15951 [Psychroflexus torquis ATCC
700755]
Length = 516
Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 64 RTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAH-RRSMSFYFAKYPKKVGPSV 122
+TY+ + D + L DL ++++ ++ E + L L+ + ++ FY ++ + P +
Sbjct: 51 KTYYQQEADFASQLLTDLAEIDNSQLSETEQISLEMLKFKLKETVDFY--EFEAYLNPLL 108
Query: 123 IDVVYPHSHLVKEDKVDEKNSSSELKVDLNKLNA 156
D + HL +V + N+ ++KV LNKLNA
Sbjct: 109 SDSGF---HLSLSYEVRDLNTYEQVKVYLNKLNA 139
>gi|224436996|ref|ZP_03657977.1| hypothetical protein HcinC1_03440 [Helicobacter cinaedi CCUG 18818]
gi|313143469|ref|ZP_07805662.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313128500|gb|EFR46117.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 340
Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 92 YLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHLVKEDKVDEKNSSSELKVD 150
YLK RL +E+ R + F Y + V+D+ HL K++K + +N +++K D
Sbjct: 118 YLKPRLDSMESFNRKIDSLFETYKDVMSGKVVDL--KKYHLSKDNKFNLQNLKNKIKAD 174
>gi|255025192|ref|ZP_05297178.1| low specificity L-allo-threonine aldolase [Listeria monocytogenes
FSL J2-003]
Length = 362
Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 50 PHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSF 109
P +P SN+F Y+ + D + A+ +QD + + YL+ + +D+ A S+
Sbjct: 283 PEVPVSNMF-----HVYFEKSADEVGAILTKIQDETRVGISGYLQEKSADVCAFEVSVGD 337
Query: 110 YFAKYPKKV 118
FAK P ++
Sbjct: 338 AFAKIPVEI 346
>gi|70947800|ref|XP_743481.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56522998|emb|CAH75639.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 1076
Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 74 INALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKV--GPSVIDVVYPHSH 131
IN L DL +SI++ +YL + L + MSFYFA K P ++D++Y
Sbjct: 41 INRLMNDLPLHKSIKIMKYLSIKKMALCININHMSFYFAAEICKSFNSPEIVDILY---- 96
Query: 132 LVKEDKVDEKNSSSELK-VDLNKL 154
++EKN+ LK D+ K+
Sbjct: 97 -----YLNEKNTEILLKECDIKKI 115
>gi|325189599|emb|CCA24084.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 616
Score = 33.5 bits (75), Expect = 9.5, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 77 LDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHLVKED 136
L Q+L VES + +++ ++ E R SM YF Y + +V+++ + H H+V+
Sbjct: 74 LVQNLLTVESWK--QFILPKIESKENERASMRLYFIMYHEATLSNVLEIAFHHQHIVESF 131
Query: 137 KVDE 140
+ +E
Sbjct: 132 QDEE 135
>gi|302663572|ref|XP_003023427.1| hypothetical protein TRV_02437 [Trichophyton verrucosum HKI 0517]
gi|291187423|gb|EFE42809.1| hypothetical protein TRV_02437 [Trichophyton verrucosum HKI 0517]
Length = 1628
Score = 33.5 bits (75), Expect = 9.5, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 77 LDQDLQDVESIE-VFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHLVKE 135
L+Q Q +E +E + L+ R+SD+E +S+ +Y +K+G ++ +SHL +
Sbjct: 1036 LEQAAQIMERLEGEKKELQERISDMEKQLKSVESTHGEYDEKIGALNQEINTLNSHLAMK 1095
Query: 136 DK----VDEKNSSSELKVDLNKLN 155
DK ++ K SS+ ++DL N
Sbjct: 1096 DKKLQDLEAKLLSSDQQLDLELAN 1119
>gi|302505838|ref|XP_003014876.1| hypothetical protein ARB_06633 [Arthroderma benhamiae CBS 112371]
gi|291178447|gb|EFE34236.1| hypothetical protein ARB_06633 [Arthroderma benhamiae CBS 112371]
Length = 2406
Score = 33.5 bits (75), Expect = 9.5, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 77 LDQDLQDVESIE-VFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGPSVIDVVYPHSHLVKE 135
L+Q Q +E +E + L+ R+SD+E +S+ +Y +K+G ++ +SHL +
Sbjct: 1036 LEQAAQIMERLEGEKKELQERISDMEKQLKSVESTHGEYDEKIGALNQEINTLNSHLAMK 1095
Query: 136 DK----VDEKNSSSELKVDLNKLN 155
DK ++ K SS+ ++DL N
Sbjct: 1096 DKKLQDLEAKLLSSDQQLDLELAN 1119
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.318 0.133 0.386
Lambda K H
0.267 0.0409 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,871,257,837
Number of Sequences: 14124377
Number of extensions: 105036931
Number of successful extensions: 284438
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 284426
Number of HSP's gapped (non-prelim): 65
length of query: 160
length of database: 4,842,793,630
effective HSP length: 122
effective length of query: 38
effective length of database: 3,119,619,636
effective search space: 118545546168
effective search space used: 118545546168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)