BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781083|ref|YP_003065496.1| hypothetical protein
CLIBASIA_04925 [Candidatus Liberibacter asiaticus str. psy62]
         (160 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 160

 Score =  328 bits (840), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MTYLSVTWNDLVQVSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSS 60
           MTYLSVTWNDLVQVSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSS
Sbjct: 1   MTYLSVTWNDLVQVSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSS 60

Query: 61  SVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGP 120
           SVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGP
Sbjct: 61  SVRRTYWSERGDIINALDQDLQDVESIEVFEYLKTRLSDLEAHRRSMSFYFAKYPKKVGP 120

Query: 121 SVIDVVYPHSHLVKEDKVDEKNSSSELKVDLNKLNAPGSP 160
           SVIDVVYPHSHLVKEDKVDEKNSSSELKVDLNKLNAPGSP
Sbjct: 121 SVIDVVYPHSHLVKEDKVDEKNSSSELKVDLNKLNAPGSP 160


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 26.2 bits (56), Expect = 0.33,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 43/149 (28%)

Query: 11  LVQVSILVFCFVSHFVQR-KSFADVHEALERYKKVARVVGPHIPNSNVFSSSVRR----- 64
           L  + +  +  V  FV R KS   + EA+  +KK+  V   +  + N  +SSV R     
Sbjct: 33  LRDIVVFPYMIVPLFVGREKSVRALDEAMNSHKKIILVTQMNSNDENPIASSVYRIGTIV 92

Query: 65  -------------------------TYWSERGDIINALDQDLQDVESIEVFEYLKTRLSD 99
                                      + ER D + A+ Q L D     V         +
Sbjct: 93  DIVQILRLPDGTVKILVEGSVRARIVEYIEREDFLEAITQVLPDPTEDPV---------E 143

Query: 100 LEAHRRSMSFYFAKY---PKKVGPSVIDV 125
           LEA  RS+   F+ Y    KK+ P VI +
Sbjct: 144 LEALSRSVIAEFSNYIKLNKKISPEVIGI 172


>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 384

 Score = 25.0 bits (53), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 14  VSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFS 59
           V IL+  F S  +  ++  + + A+ R   + R+VG  + N ++FS
Sbjct: 303 VIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFS 348


>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1187

 Score = 23.5 bits (49), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%)

Query: 22  VSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFSSSVRRTYWSERGDIINALDQDL 81
           V  +  R    DV+E  ++Y       G  I +  +F SS +RT        IN L + +
Sbjct: 164 VGEYAVRGGILDVYEPTKKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVM 223

Query: 82  QDVESIEVF 90
              ++I  F
Sbjct: 224 LTSQNISRF 232



 Score = 21.9 bits (45), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 42  KKVARVVGPHIPNSNVFSSSVRRTYWSERGDIINALDQDLQDVESIEVFEYL 93
           K+    V P + + +++S  ++R    E  D   A+D  +QD+ S  + + L
Sbjct: 599 KRAIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRL 650


>gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 296

 Score = 22.7 bits (47), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 38  LERYKKVARVVGPHIPNSNVFS 59
           +ERY+K    +G  + NS V S
Sbjct: 202 VERYRKAGCALGASLENSVVIS 223


>gi|254781084|ref|YP_003065497.1| hypothetical protein CLIBASIA_04930 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 59

 Score = 21.2 bits (43), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 149 VDLNKLNAPGS 159
            DLNK+NAP S
Sbjct: 46  ADLNKMNAPDS 56


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.133    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,142
Number of Sequences: 1233
Number of extensions: 4051
Number of successful extensions: 12
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 9
length of query: 160
length of database: 328,796
effective HSP length: 67
effective length of query: 93
effective length of database: 246,185
effective search space: 22895205
effective search space used: 22895205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)